BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5865
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZPE2|MTMR5_MOUSE Myotubularin-related protein 5 OS=Mus musculus GN=Sbf1 PE=1 SV=2
Length = 1867
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/74 (56%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
LLPAEGA+F+T YR+IF G P DP EQVV R+FP+ +L KEK+I+ Q + +DQ LQ+
Sbjct: 922 LLPAEGAVFLTTYRVIFTGMPTDPLVGEQVVVRSFPVAALTKEKRISVQ--TPVDQLLQD 979
Query: 96 GYQLRSSTFQVTAL 109
G QLRS TFQ+ +
Sbjct: 980 GLQLRSCTFQLLKM 993
>sp|O95248|MTMR5_HUMAN Myotubularin-related protein 5 OS=Homo sapiens GN=SBF1 PE=1 SV=3
Length = 1867
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/74 (56%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
LLPAEGA+F+T YR+IF G P DP EQVV R+FP+ +L KEK+I+ Q + +DQ LQ+
Sbjct: 922 LLPAEGAVFLTTYRVIFTGMPTDPLVGEQVVVRSFPVAALTKEKRISVQ--TPVDQLLQD 979
Query: 96 GYQLRSSTFQVTAL 109
G QLRS TFQ+ +
Sbjct: 980 GLQLRSCTFQLLKM 993
>sp|Q6NTN5|MTMRD_XENLA Myotubularin-related protein 13 OS=Xenopus laevis GN=sbf2 PE=2 SV=1
Length = 1873
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Query: 36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
+LPAEGA+F+T YRIIFKGTP D EQ V R+ PI S+ +EKKI Q + L Q++QE
Sbjct: 909 ILPAEGALFLTTYRIIFKGTPHDALVGEQTVIRSVPIASITREKKINVQ--NQLHQNMQE 966
Query: 96 GYQLRSSTFQV 106
G Q+RS+TFQ+
Sbjct: 967 GLQIRSATFQL 977
>sp|Q86WG5|MTMRD_HUMAN Myotubularin-related protein 13 OS=Homo sapiens GN=SBF2 PE=1 SV=1
Length = 1849
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 39 AEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQ 98
AEGA+F+T YRI+F+GTP D EQ V R+FPI S+ KEKKIT Q Q++QEG Q
Sbjct: 914 AEGALFLTTYRILFRGTPHDQLVGEQTVVRSFPIASITKEKKITMQNQLQ--QNMQEGLQ 971
Query: 99 LRSSTFQV 106
+ S++FQ+
Sbjct: 972 ITSASFQL 979
>sp|Q52KU6|MTM1_XENLA Myotubularin OS=Xenopus laevis GN=mtm1 PE=2 SV=1
Length = 602
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 38 PAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKI 81
P +G I+VTNY++ FKG ++P ++T A P+ + + +K+
Sbjct: 57 PVKGRIYVTNYKLYFKGEEMEP-----LITFAVPLGVIARIEKM 95
>sp|Q5EB32|MTM1_XENTR Myotubularin OS=Xenopus tropicalis GN=mtm1 PE=2 SV=1
Length = 602
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 38 PAEGAIFVTNYRIIFKGTPLDPF 60
P +G I VTNY++ FKG ++P
Sbjct: 57 PVKGRIHVTNYKLYFKGEEMEPL 79
>sp|B0C0B6|RECO_ACAM1 DNA repair protein RecO OS=Acaryochloris marina (strain MBIC
11017) GN=recO PE=3 SV=1
Length = 293
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 42 AIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHL 89
A+FV N ++ +G LD A + + ++P S N K TSQYL+ L
Sbjct: 53 ALFVVNDLMLVQGRSLDKIAQAETL-ESYPGLSQNLAKLTTSQYLAEL 99
>sp|Q8Y7Q1|SYFB_LISMO Phenylalanine--tRNA ligase beta subunit OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=pheT PE=3
SV=1
Length = 802
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 17 IRSVYNNIYRRKPAVPRTPLL-----PAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFP 71
I+ V N + P +T L+ P + VTNY + G PL F +++ ++
Sbjct: 227 IKMVENIEIKESPLWLQTKLMKAGIRPHNNVVDVTNYINLLYGQPLHSFDYDKIGSKKIV 286
Query: 72 ITSLNKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTSM 112
+ S ++++IT+ L ++LQ G+ + ++ + A+ +
Sbjct: 287 VRSAKEQEEITT--LDGEKRTLQAGHTVITNGVEPIAIAGV 325
>sp|Q720K7|SYFB_LISMF Phenylalanine--tRNA ligase beta subunit OS=Listeria monocytogenes
serotype 4b (strain F2365) GN=pheT PE=3 SV=1
Length = 802
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 17 IRSVYNNIYRRKPAVPRTPLL-----PAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFP 71
I+ V N + P +T L+ P + VTNY + G PL F +++ ++
Sbjct: 227 IKMVENIEIKESPLWLQTKLMKAGIRPHNNVVDVTNYINLLYGQPLHSFDYDKIGSKKIV 286
Query: 72 ITSLNKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTSM 112
+ S ++++IT+ L ++LQ G+ + ++ + A+ +
Sbjct: 287 VRSAKEQEEITT--LDGEKRTLQAGHTVITNGVEPIAIAGV 325
>sp|Q924M5|BOLL_MOUSE Protein boule-like OS=Mus musculus GN=Boll PE=2 SV=2
Length = 281
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 5 ASSLNYSVERLKIRSVYNNIYRRKPAVPRTPLLPAEGAIFVT 46
A LNY ++L I I +++ +PR+ L+PA G +++T
Sbjct: 93 AEKLNYKDKKLNIGPA---IRKQQVGIPRSSLMPAAGTMYLT 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,568,457
Number of Sequences: 539616
Number of extensions: 1349539
Number of successful extensions: 3056
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3044
Number of HSP's gapped (non-prelim): 14
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)