Query psy5865
Match_columns 113
No_of_seqs 45 out of 47
Neff 2.9
Searched_HMMs 46136
Date Fri Aug 16 19:59:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1090|consensus 100.0 8.3E-33 1.8E-37 255.5 4.2 100 10-111 789-894 (1732)
2 smart00568 GRAM domain in gluc 97.3 0.0002 4.3E-09 44.3 2.5 41 37-81 20-60 (61)
3 PF02893 GRAM: GRAM domain; I 96.9 0.00095 2.1E-08 42.2 2.6 42 36-81 27-68 (69)
4 KOG3294|consensus 95.3 0.0087 1.9E-07 49.7 1.4 33 39-76 47-80 (261)
5 KOG4471|consensus 87.8 0.43 9.2E-06 44.4 2.7 40 38-82 54-93 (717)
6 PF11605 Vps36_ESCRT-II: Vacuo 85.2 0.52 1.1E-05 32.7 1.5 35 39-78 36-70 (89)
7 PF14470 bPH_3: Bacterial PH d 84.2 1.3 2.7E-05 28.6 2.9 39 36-78 19-57 (96)
8 KOG0840|consensus 79.6 0.2 4.3E-06 42.0 -2.7 62 45-108 89-150 (275)
9 smart00683 DM16 Repeats in sea 79.2 1.2 2.6E-05 29.2 1.4 17 40-56 20-36 (55)
10 KOG2760|consensus 57.4 5.7 0.00012 35.4 1.3 95 12-113 42-147 (432)
11 PF15553 TEX19: Testis-express 52.3 5.6 0.00012 31.3 0.4 20 92-112 24-43 (160)
12 PF15044 CLU_N: Mitochondrial 46.7 12 0.00026 25.0 1.3 22 39-60 17-38 (76)
13 PF08955 BofC_C: BofC C-termin 33.2 18 0.00039 25.0 0.5 42 49-102 21-62 (75)
14 PF08000 bPH_1: Bacterial PH d 32.2 47 0.001 24.4 2.6 37 41-79 42-78 (124)
15 smart00492 HELICc3 helicase su 25.8 70 0.0015 23.2 2.5 34 42-76 50-83 (141)
16 PF07289 DUF1448: Protein of u 25.6 37 0.0008 29.3 1.2 17 39-55 41-57 (339)
17 PF03517 Voldacs: Regulator of 25.0 54 0.0012 23.7 1.8 14 41-54 1-14 (135)
18 PF05015 Plasmid_killer: Plasm 22.5 46 0.001 22.6 1.0 12 47-58 72-83 (93)
19 PF09795 Atg31: Autophagy-rela 21.6 50 0.0011 26.0 1.2 16 39-54 33-48 (160)
20 PF09178 DUF1945: Domain of un 20.8 43 0.00093 22.0 0.5 16 8-23 29-44 (51)
No 1
>KOG1090|consensus
Probab=99.97 E-value=8.3e-33 Score=255.51 Aligned_cols=100 Identities=45% Similarity=0.640 Sum_probs=90.3
Q ss_pred cceeeEEEeeeehhhhhcCCC------CCCCCccccccceeeecceeEEeeccCCCccccceeEeceeccccccchhhhh
Q psy5865 10 YSVERLKIRSVYNNIYRRKPA------VPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITS 83 (113)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~------~~Gp~LLPAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki~~ 83 (113)
+.||-++-.+++-+|+ -|++ .+|++|||||||||||||||||||+||||++|||||||+||++|++|||||++
T Consensus 789 lpGE~lv~D~lrcyLl-pdgrE~e~~~~~~~~LlPAeGalFLTnYRVIFkG~p~Dpl~~eqviVrtfPlasl~keKkisv 867 (1732)
T KOG1090|consen 789 LPGEFLVSDPLRCYLL-PDGRESEMSLNRLENLLPAEGALFLTNYRVIFKGKPVDPLATEQVIVRTFPLASLEKEKKISV 867 (1732)
T ss_pred cCchhhccCCceEEEe-cCcccccccccccccccccCcceEEeeeEEEecCCCCCcccccceEEEEeehhhhhhhhhhhh
Confidence 4678888888888888 4432 36699999999999999999999999999999999999999999999999996
Q ss_pred hhhhhhhhhhhhhhhhhchhhhhhhhhc
Q psy5865 84 QYLSHLDQSLQEGYQLRSSTFQVTALTS 111 (113)
Q Consensus 84 ~~~~~~~~~l~eGLQLRS~tfQlikvAF 111 (113)
++ .+.+|.|++|||||||+||++|+||
T Consensus 868 ~~-~~~dQll~~Glqlrs~~fql~k~Af 894 (1732)
T KOG1090|consen 868 KK-LIPDQLLEKGLQLRSIIFQLSKCAF 894 (1732)
T ss_pred hc-cChHHHHHhcchhhhHHHHHHHhhc
Confidence 44 7788889999999999999999998
No 2
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=97.29 E-value=0.0002 Score=44.34 Aligned_cols=41 Identities=20% Similarity=0.510 Sum_probs=33.4
Q ss_pred cccccceeeecceeEEeeccCCCccccceeEeceeccccccchhh
Q psy5865 37 LPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKI 81 (113)
Q Consensus 37 LPAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki 81 (113)
.|..|.+|+|++++.|.....+...+ ...+|+..|.+.+|+
T Consensus 20 ~~~~G~lyiT~~~l~F~S~~~~~~~~----~~~ipl~~I~~i~k~ 60 (61)
T smart00568 20 GPVQGRLYISNYRLCFRSDLPGKLTP----KVVIPLADITRIEKS 60 (61)
T ss_pred ccccEEEEEECCEEEEEccCCCCeeE----EEEEEHHHeeEEEEC
Confidence 68999999999999999866554322 668899999888775
No 3
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=96.85 E-value=0.00095 Score=42.19 Aligned_cols=42 Identities=17% Similarity=0.398 Sum_probs=30.0
Q ss_pred ccccccceeeecceeEEeeccCCCccccceeEeceeccccccchhh
Q psy5865 36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKI 81 (113)
Q Consensus 36 LLPAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki 81 (113)
-.|..|.||+|++|+.|.....+... ....+|+..|.+.+|.
T Consensus 27 ~~~~~G~LyiT~~~lcF~s~~~~~~~----~~~~ipl~~I~~i~k~ 68 (69)
T PF02893_consen 27 KIPVQGRLYITNNYLCFYSNKFGSKT----CKFVIPLSDIKSIEKE 68 (69)
T ss_dssp ---EEEEEEEESSEEEEEESSSSS-E-----EEEEEGGGEEEEEEE
T ss_pred ccceeeEEEECCCEEEEEECCCCCce----EEEEEEhHheeEEEEe
Confidence 67899999999999999985444331 4568899998887764
No 4
>KOG3294|consensus
Probab=95.26 E-value=0.0087 Score=49.69 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=24.9
Q ss_pred cccceeeecceeEEeecc-CCCccccceeEeceeccccc
Q psy5865 39 AEGAIFVTNYRIIFKGTP-LDPFACEQVVTRAFPITSLN 76 (113)
Q Consensus 39 AEGAlFLTnYRvIFkG~P-~Dp~~~eq~VvRSfPv~Sl~ 76 (113)
+.|+||||||||||--.. .|.+.+=+ .|+.++.
T Consensus 47 kkGtlyLTs~RiIFis~~~~D~fksF~-----MPf~~mk 80 (261)
T KOG3294|consen 47 KKGTLYLTSHRIIFISSKPKDAFKSFM-----MPFNLMK 80 (261)
T ss_pred eeeeEEeecceEEEecCCCCcchhhhc-----chhhhhh
Confidence 579999999999999555 88875544 2666643
No 5
>KOG4471|consensus
Probab=87.77 E-value=0.43 Score=44.36 Aligned_cols=40 Identities=25% Similarity=0.528 Sum_probs=35.2
Q ss_pred ccccceeeecceeEEeeccCCCccccceeEeceeccccccchhhh
Q psy5865 38 PAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKIT 82 (113)
Q Consensus 38 PAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki~ 82 (113)
|..|+|.|||||+-||-.+-|| ..+-.+|+.-|.+..|+.
T Consensus 54 ~~~g~l~lsNyRl~fks~~t~~-----~~~~~VPLg~Ie~vek~~ 93 (717)
T KOG4471|consen 54 AVDGTLALSNYRLYFKSKETDP-----PFVLDVPLGVIERVEKRG 93 (717)
T ss_pred cccceEEeeeeEEEEEeccCCC-----ceeEeechhhhhhhhhcC
Confidence 7789999999999999999987 566688999999988887
No 6
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=85.18 E-value=0.52 Score=32.75 Aligned_cols=35 Identities=23% Similarity=0.493 Sum_probs=22.4
Q ss_pred cccceeeecceeEEeeccCCCccccceeEeceeccccccc
Q psy5865 39 AEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKE 78 (113)
Q Consensus 39 AEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~ke 78 (113)
-.|.++|||.|+||--- -||-.. --++|+..+.+.
T Consensus 36 q~G~l~LTsHRliw~d~-~~~~~~----s~~l~L~~i~~~ 70 (89)
T PF11605_consen 36 QNGRLYLTSHRLIWVDD-SDPSKH----SIALPLSLISHI 70 (89)
T ss_dssp SCEEEEEESSEEEEEES-SGHCHH-----EEEEGGGEEEE
T ss_pred cCCEEEEEeeEEEEEcC-CCCcee----EEEEEchHeEEE
Confidence 37999999999999632 133210 126777776654
No 7
>PF14470 bPH_3: Bacterial PH domain
Probab=84.18 E-value=1.3 Score=28.57 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=28.9
Q ss_pred ccccccceeeecceeEEeeccCCCccccceeEeceeccccccc
Q psy5865 36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKE 78 (113)
Q Consensus 36 LLPAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~ke 78 (113)
.-.-.|.+++||=|+||.+. ++.-. ....++|...|++.
T Consensus 19 ~~~~~g~l~~TnkRlif~~~--~~~~~--~~~~~i~y~~I~~v 57 (96)
T PF14470_consen 19 FTSFPGVLVLTNKRLIFYSK--GMFGG--KKFESIPYDDITSV 57 (96)
T ss_pred ccCceeEEEEeCCEEEEEEc--ccCCC--ceEEEEEhhheEEE
Confidence 44567999999999999988 43322 44689998887653
No 8
>KOG0840|consensus
Probab=79.65 E-value=0.2 Score=42.04 Aligned_cols=62 Identities=24% Similarity=0.376 Sum_probs=43.7
Q ss_pred eecceeEEeeccCCCccccceeEeceeccccccchhhhhhhhhhhhhhhhhhhhhhchhhhhhh
Q psy5865 45 VTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTA 108 (113)
Q Consensus 45 LTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki~~~~~~~~~~~l~eGLQLRS~tfQlik 108 (113)
|=-+||||-|.|+|+.+++++|-+=+=+.+.-..|.|-. |.+.---++.+||.|. =|+|.+|
T Consensus 89 LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~l-yINSPGG~vtaglAIY-DtMq~ik 150 (275)
T KOG0840|consen 89 LLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYL-YINSPGGSVTAGLAIY-DTMQYIK 150 (275)
T ss_pred HHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEE-EEeCCCCccchhhhHH-HHHHhhC
Confidence 345799999999999999998877777777666666653 3333333457777776 3556554
No 9
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=79.22 E-value=1.2 Score=29.22 Aligned_cols=17 Identities=35% Similarity=0.724 Sum_probs=14.4
Q ss_pred ccceeeecceeEEeecc
Q psy5865 40 EGAIFVTNYRIIFKGTP 56 (113)
Q Consensus 40 EGAlFLTnYRvIFkG~P 56 (113)
.|.+++||-|+||--.-
T Consensus 20 ~G~l~VTNlRiiW~s~~ 36 (55)
T smart00683 20 LGVFFVTNLRLVWHSDT 36 (55)
T ss_pred eeEEEEEeeEEEEEeCC
Confidence 49999999999997543
No 10
>KOG2760|consensus
Probab=57.35 E-value=5.7 Score=35.39 Aligned_cols=95 Identities=23% Similarity=0.275 Sum_probs=54.1
Q ss_pred eeeEEEeeeehhhhhcCCCCCCCC-ccccccceeeecceeEEe--eccCCCc---ccc--ceeEeceeccc---cccchh
Q psy5865 12 VERLKIRSVYNNIYRRKPAVPRTP-LLPAEGAIFVTNYRIIFK--GTPLDPF---ACE--QVVTRAFPITS---LNKEKK 80 (113)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~Gp~-LLPAEGAlFLTnYRvIFk--G~P~Dp~---~~e--q~VvRSfPv~S---l~keKk 80 (113)
.|++-+.+.+=.+|- |-++ +==..|++-+|+.|+||. |-..|+. +|. +++--+-|..+ .-|..+
T Consensus 42 ne~l~lt~~~I~~~D-----~~~k~~~~~dg~~vltt~Rliw~~p~~~~~~~~~~~~pls~vI~v~~~~~~~~~~g~~~~ 116 (432)
T KOG2760|consen 42 NETLLLTSQRIIIYD-----GDKKTTKFDDGTLVLTTHRLIWRSPTSSADVEVTWVCPLSMVINVGEPAKSELTFGKINR 116 (432)
T ss_pred CceEEEeecceEEec-----CCCccccccchhhhhhhceeeecCcccccccceeeeeceeEEEEecCccchhhcccccce
Confidence 677888887777772 2222 444789999999999997 2333332 333 23333444444 222223
Q ss_pred hhhhhhhhhhhhhhhhhhhhchhhhhhhhhcCC
Q psy5865 81 ITSQYLSHLDQSLQEGYQLRSSTFQVTALTSMG 113 (113)
Q Consensus 81 i~~~~~~~~~~~l~eGLQLRS~tfQlikvAF~~ 113 (113)
+.+...++-++ -++|. .-+|+||++++.|=|
T Consensus 117 i~~~~~~~~~~-~~~gp-~~a~~~~~iqLsFR~ 147 (432)
T KOG2760|consen 117 IVVILHKPNPR-FSPGP-CPASTFAFIQLSFRG 147 (432)
T ss_pred EEEEeCCCCCc-CCCCC-cccceeeEEEEEecC
Confidence 33322222222 35554 567999999999854
No 11
>PF15553 TEX19: Testis-expressed protein 19
Probab=52.31 E-value=5.6 Score=31.28 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=17.1
Q ss_pred hhhhhhhhhchhhhhhhhhcC
Q psy5865 92 SLQEGYQLRSSTFQVTALTSM 112 (113)
Q Consensus 92 ~l~eGLQLRS~tfQlikvAF~ 112 (113)
+|++|=||+ .||.++|.||+
T Consensus 24 qLqHG~ql~-iCFaCfKaAFl 43 (160)
T PF15553_consen 24 QLQHGSQLK-ICFACFKAAFL 43 (160)
T ss_pred HHhcchHHH-HHHHHHHHHHH
Confidence 479999998 67889999995
No 12
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=46.68 E-value=12 Score=25.02 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=18.9
Q ss_pred cccceeeecceeEEeeccCCCc
Q psy5865 39 AEGAIFVTNYRIIFKGTPLDPF 60 (113)
Q Consensus 39 AEGAlFLTnYRvIFkG~P~Dp~ 60 (113)
++-+-++|||.+-++|.+.|.+
T Consensus 17 ~~~t~~~Tn~~L~~~g~~L~~~ 38 (76)
T PF15044_consen 17 SPETCYLTNFSLEHNGQRLDDF 38 (76)
T ss_pred CccccceeEEEEEECCCccCCc
Confidence 3456789999999999999887
No 13
>PF08955 BofC_C: BofC C-terminal domain; InterPro: IPR015050 The C-terminal domain of the bacterial protein, bypass of forespore C (BofC), contains a three-stranded beta-sheet and three alpha-helices. The exact function is unknown []. ; PDB: 2BW2_A.
Probab=33.18 E-value=18 Score=25.04 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=16.5
Q ss_pred eeEEeeccCCCccccceeEeceeccccccchhhhhhhhhhhhhhhhhhhhhhch
Q psy5865 49 RIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQLRSS 102 (113)
Q Consensus 49 RvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki~~~~~~~~~~~l~eGLQLRS~ 102 (113)
=.+|.|.|-. +-||+||=.-.+.+ +. +...++|.+|+.++|.
T Consensus 21 LslF~G~P~~-----~~vI~sFfqIdv~~---Le----s~~~~~L~~GIrV~~~ 62 (75)
T PF08955_consen 21 LSLFEGPPGE-----EKVIQSFFQIDVEK---LE----SSDHDQLKRGIRVRSK 62 (75)
T ss_dssp EEEBSSS-ST-----T-BS-------TTT---S-----HHHHHHHHH--S---H
T ss_pred EEEEecCCCC-----CchheeeeecCHHH---cC----HhHHHHHhCCCeeCCH
Confidence 3589999943 35778875555333 21 2345678999888874
No 14
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=32.19 E-value=47 Score=24.41 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=26.7
Q ss_pred cceeeecceeEEeeccCCCccccceeEeceeccccccch
Q psy5865 41 GAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEK 79 (113)
Q Consensus 41 GAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keK 79 (113)
..+-+||+|+|+. ..--..+..+-+.|+|-.+|+...
T Consensus 42 D~~vFTnkRlI~v--D~QG~TGkK~~~~siPY~~I~~~s 78 (124)
T PF08000_consen 42 DEIVFTNKRLILV--DKQGITGKKVEYKSIPYSSITHFS 78 (124)
T ss_dssp EEEEEESSEEEEE--EEESSSSSEEEEEEEEGGGEEEEE
T ss_pred eeEEEecChheEE--ecccCccceEEEEEEehhhccEEE
Confidence 4677899999986 112234566889999999976643
No 15
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=25.79 E-value=70 Score=23.23 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=30.1
Q ss_pred ceeeecceeEEeeccCCCccccceeEeceeccccc
Q psy5865 42 AIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLN 76 (113)
Q Consensus 42 AlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~ 76 (113)
++++...+ .|-|+..+-..+..+|+-.+|..+..
T Consensus 50 ~iL~~~~~-~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 50 AILLATAR-FSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred EEEEEccc-eecceecCCCCeeEEEEEecCCCCCC
Confidence 78899888 78899999889999999999998755
No 16
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=25.65 E-value=37 Score=29.34 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=15.0
Q ss_pred cccceeeecceeEEeec
Q psy5865 39 AEGAIFVTNYRIIFKGT 55 (113)
Q Consensus 39 AEGAlFLTnYRvIFkG~ 55 (113)
-.|.|.+||.|+||--.
T Consensus 41 ~~G~l~vTNLR~iW~s~ 57 (339)
T PF07289_consen 41 DRGRLVVTNLRLIWHSL 57 (339)
T ss_pred CeeEEEEEeeeeEEecc
Confidence 68999999999999843
No 17
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=24.99 E-value=54 Score=23.72 Aligned_cols=14 Identities=36% Similarity=0.767 Sum_probs=13.2
Q ss_pred cceeeecceeEEee
Q psy5865 41 GAIFVTNYRIIFKG 54 (113)
Q Consensus 41 GAlFLTnYRvIFkG 54 (113)
|.||+|+=||+|-+
T Consensus 1 g~L~Vt~~~l~w~~ 14 (135)
T PF03517_consen 1 GTLYVTESRLIWFS 14 (135)
T ss_dssp EEEEEETTEEEEEE
T ss_pred CEEEEecCEEEEEC
Confidence 78999999999998
No 18
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=22.48 E-value=46 Score=22.57 Aligned_cols=12 Identities=42% Similarity=0.650 Sum_probs=9.3
Q ss_pred cceeEEeeccCC
Q psy5865 47 NYRIIFKGTPLD 58 (113)
Q Consensus 47 nYRvIFkG~P~D 58 (113)
|||+||+-..-|
T Consensus 72 ~~RliF~~~~~~ 83 (93)
T PF05015_consen 72 NWRLIFRFEDGD 83 (93)
T ss_pred CEEEEEEEeCCC
Confidence 899999955545
No 19
>PF09795 Atg31: Autophagy-related protein 31; InterPro: IPR018621 Autophagy is an intracellular degradation system that responds to nutrient starvation. Cis1/Atg31 has been shown to be required for autophagosome formation in Saccharomyces cerevisiae (Baker's yeast) []. It interacts with Atg17 [].
Probab=21.59 E-value=50 Score=26.00 Aligned_cols=16 Identities=38% Similarity=0.663 Sum_probs=14.3
Q ss_pred cccceeeecceeEEee
Q psy5865 39 AEGAIFVTNYRIIFKG 54 (113)
Q Consensus 39 AEGAlFLTnYRvIFkG 54 (113)
+..|.|+||-|-||-.
T Consensus 33 ~~~amFpTNIkYIFED 48 (160)
T PF09795_consen 33 NQNAMFPTNIKYIFED 48 (160)
T ss_pred ccceecccceEEEecC
Confidence 5689999999999985
No 20
>PF09178 DUF1945: Domain of unknown function (DUF1945); InterPro: IPR015261 Members of this entry, which are predominantly found in prokaryotic 4-alpha-glucanotransferase, adopt a structure composed of six antiparallel beta-strands, four of which form a beta-sheet and another two form a type I, beta-hairpin. The role of this family of domains, has not, as yet, been defined []. ; PDB: 1LWH_B 1LWJ_B.
Probab=20.81 E-value=43 Score=22.04 Aligned_cols=16 Identities=25% Similarity=0.129 Sum_probs=10.8
Q ss_pred cccceeeEEEeeeehh
Q psy5865 8 LNYSVERLKIRSVYNN 23 (113)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (113)
-|+|+|-+..||||--
T Consensus 29 HNlSg~E~vFEGvr~k 44 (51)
T PF09178_consen 29 HNLSGEEVVFEGVRLK 44 (51)
T ss_dssp EE-SSS-EEETTEEE-
T ss_pred EecCCCEEEEEEEEee
Confidence 3899999999998743
Done!