Query psy5865
Match_columns 113
No_of_seqs 45 out of 47
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 20:00:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 98.0 1.6E-06 5.4E-11 74.6 1.6 88 10-112 10-97 (528)
2 1lw3_A Myotubularin-related pr 97.8 9.2E-06 3.1E-10 71.9 2.6 66 39-112 104-169 (657)
3 2yf0_A Myotubularin-related pr 97.2 0.00013 4.3E-09 62.8 2.3 61 37-112 23-83 (512)
4 2hth_B Vacuolar protein sortin 95.1 0.01 3.5E-07 42.7 2.2 33 39-77 38-70 (140)
5 2cay_A VPS36 PH domain, vacuol 93.0 0.034 1.2E-06 40.4 1.6 40 10-53 26-65 (145)
6 2bw2_A Bypass of forespore C; 51.1 4.1 0.00014 29.9 0.6 62 27-102 59-125 (140)
7 1w7p_D VPS36P, YLR417W; ESCRT- 41.6 5.5 0.00019 34.8 0.0 14 39-52 43-56 (566)
8 1zyi_A Methylosome subunit pic 24.7 34 0.0012 25.4 1.9 16 39-54 42-57 (171)
9 2khe_A Toxin RELE, toxin-like 20.5 43 0.0015 19.4 1.4 27 27-53 38-68 (89)
10 4gm2_A ATP-dependent CLP prote 18.9 15 0.00051 27.8 -1.2 54 47-100 27-89 (205)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=97.99 E-value=1.6e-06 Score=74.62 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=61.3
Q ss_pred cceeeEEEeeeehhhhhcCCCCCCCCccccccceeeecceeEEeeccCCCccccceeEeceeccccccchhhhhhhhhhh
Q psy5865 10 YSVERLKIRSVYNNIYRRKPAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHL 89 (113)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~Gp~LLPAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki~~~~~~~~ 89 (113)
+.||-++.+ +.+-+| ..+.. -+.+|.|++||||+||.+.+-|+ .....+|+++|.+.+|+.. . .-
T Consensus 10 LpGE~i~~~-~~~V~~-~~~~~-----~~~~GtL~lTn~rLiF~~~~~~~-----~~~~~iPL~~I~~vek~~~--~-s~ 74 (528)
T 1zsq_A 10 LPGENIKDM-AKDVTY-ICPFT-----GAVRGTLTVTNYRLYFKSMERDP-----PFVLDASLGVINRVEKIGG--A-SS 74 (528)
T ss_dssp CTTCCEEEE-EEEEEE-EETTT-----EEEEEEEEEESSEEEEEESSSSS-----CEEEEEEGGGEEEEEEECC--T-TC
T ss_pred CCCCeEEEe-cCCEEE-eCCCC-----CceeEEEEEECCEEEEEccCCCc-----cEEEEeeccceEEEEEcCC--C-Cc
Confidence 677877765 333333 22221 27899999999999999986553 3456999999999988752 1 01
Q ss_pred hhhhhhhhhhhchhhhhhhhhcC
Q psy5865 90 DQSLQEGYQLRSSTFQVTALTSM 112 (113)
Q Consensus 90 ~~~l~eGLQLRS~tfQlikvAF~ 112 (113)
.....++|+|+...|+.++++|-
T Consensus 75 ~~~~~~~l~I~CKDfr~~~f~f~ 97 (528)
T 1zsq_A 75 RGENSYGLETVCKDIRNLRFAHK 97 (528)
T ss_dssp CSTTCSEEEEEETTTEEEEEECC
T ss_pred CCCCCceEEEEccCCeEEEEEec
Confidence 11235679999999999888873
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=97.76 E-value=9.2e-06 Score=71.87 Aligned_cols=66 Identities=23% Similarity=0.303 Sum_probs=48.7
Q ss_pred cccceeeecceeEEeeccCCCccccceeEeceeccccccchhhhhhhhhhhhhhhhhhhhhhchhhhhhhhhcC
Q psy5865 39 AEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTSM 112 (113)
Q Consensus 39 AEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki~~~~~~~~~~~l~eGLQLRS~tfQlikvAF~ 112 (113)
.+|.|++||||+||.+.+.|+ ...-.+|+..|.+.+|+... .. .....++|+|+...|+.++++|-
T Consensus 104 ~~GtL~lTnyrLiF~~~~~~~-----~~~~~IPL~~I~~Iekv~g~-s~--~g~~~~~l~I~CKDfR~~~f~f~ 169 (657)
T 1lw3_A 104 VRGTLTVTNYRLYFKSMERDP-----PFVLDASLGVINRVEKIGGA-SS--RGENSYGLETVCKDIRNLRFAHK 169 (657)
T ss_dssp EEEEEEEESSEEEEEESSSSS-----CEEEEEEGGGEEEEEEECCT-TC--CSTTCSEEEEEETTTEEEEEECC
T ss_pred eeEEEEEECCEEEEEecCCCc-----ceEEEecccceEEEEecCCC-cc--cCCCCceEEEEecCCcEEEEEeC
Confidence 449999999999999986553 23458999999999887520 00 11235679999999998888773
No 3
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=97.19 E-value=0.00013 Score=62.75 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=42.8
Q ss_pred cccccceeeecceeEEeeccCCCccccceeEeceeccccccchhhhhhhhhhhhhhhhhhhhhhchhhhhhhhhcC
Q psy5865 37 LPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTSM 112 (113)
Q Consensus 37 LPAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki~~~~~~~~~~~l~eGLQLRS~tfQlikvAF~ 112 (113)
-|.+|.|++||||+||++. ..++..+.-.+|++++|.+..+ -..+|+|+...|+.++++|-
T Consensus 23 ~~~~GtL~lTn~~LiF~~~-----~~~e~wi~~~~I~~VeK~~~~~----------~~~~l~I~CKDfr~~~f~f~ 83 (512)
T 2yf0_A 23 KSLTGTLYLTATHLLFIDS-----HQKETWILHHHIASVEKLALTT----------SGCPLVIQCKNFRTVHFIVP 83 (512)
T ss_dssp -CCEEEEEECSSEEEEEES-----SSCEEEEEGGGEEEEEECCCBT----------TBEEEEEEETTSCEEEEEES
T ss_pred CceeEEEEEECCEEEEeCC-----CCCceEecccceeEEEEecCCC----------CCceEEEEecCCcEEEEEeC
Confidence 4899999999999999982 1234555566777776643221 12458899888888888774
No 4
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=95.05 E-value=0.01 Score=42.71 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=22.6
Q ss_pred cccceeeecceeEEeeccCCCccccceeEeceecccccc
Q psy5865 39 AEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNK 77 (113)
Q Consensus 39 AEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~k 77 (113)
-.|.||||+|||||--.. + ..+ --++|+..+.+
T Consensus 38 k~G~l~LTshRli~~d~~-~---~~~--s~~lpl~~v~~ 70 (140)
T 2hth_B 38 DAGTLLLSTHRLIWRDQK-N---HEC--CMAILLSQIVF 70 (140)
T ss_dssp CCEEEEEESSEEEEEETT-C---CSC--CEEEEGGGEEE
T ss_pred cCCEEEEecCEEEEecCC-C---Cce--EEEEEhHHeee
Confidence 889999999999995322 1 222 23777777644
No 5
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=93.04 E-value=0.034 Score=40.41 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=24.6
Q ss_pred cceeeEEEeeeehhhhhcCCCCCCCCccccccceeeecceeEEe
Q psy5865 10 YSVERLKIRSVYNNIYRRKPAVPRTPLLPAEGAIFVTNYRIIFK 53 (113)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~Gp~LLPAEGAlFLTnYRvIFk 53 (113)
+.+|++....=-=.||--|... .=--.|.+|||||||||-
T Consensus 26 ~~~E~il~~~d~V~Ly~g~~k~----~~~k~G~lyLTshRIIyv 65 (145)
T 2cay_A 26 REGEKDIFIDQSVGLYHGKSKI----LQRQRGRIFLTSQRIIYI 65 (145)
T ss_dssp CTTCCEEEEEEEEEEEETTEEC----TTCSSEEEEEESSEEEEE
T ss_pred CCCCEEEEEcCCcceecCCCCC----cCCCccEEEEEcCeEEEe
Confidence 4567766654333344222211 124789999999999995
No 6
>2bw2_A Bypass of forespore C; sporulation, signaling protein, BOFC, sigmak checkpoint; NMR {Bacillus subtilis}
Probab=51.11 E-value=4.1 Score=29.94 Aligned_cols=62 Identities=26% Similarity=0.405 Sum_probs=43.0
Q ss_pred cCCCCCCCCccccccceeee--cceeEEeeccCCCccccceeEece---eccccccchhhhhhhhhhhhhhhhhhhhhhc
Q psy5865 27 RKPAVPRTPLLPAEGAIFVT--NYRIIFKGTPLDPFACEQVVTRAF---PITSLNKEKKITSQYLSHLDQSLQEGYQLRS 101 (113)
Q Consensus 27 ~~~~~~Gp~LLPAEGAlFLT--nYRvIFkG~P~Dp~~~eq~VvRSf---Pv~Sl~keKki~~~~~~~~~~~l~eGLQLRS 101 (113)
|+-..+=.+++=+.|-+=++ .|=.||-|.|-. +|-|||+| |+.+|.+ ..+.+|++|+-++|
T Consensus 59 ~k~VdDisP~~K~ngY~Gi~~dG~LslF~G~P~~----~~kvI~sffqIdv~~Les----------~~~~~L~~GIrv~~ 124 (140)
T 2bw2_A 59 RKQMDDISPLSKVNGYIGVSDNGVISTFHGRPEP----ASEPIQSFFQIDLERLES----------HMQKNLLKGIPFRT 124 (140)
T ss_dssp EEECSSCCTGGGTCCCEEEETTTEEEEBSSSCST----TSCBSCCCCCCCTTTSCH----------HHHHHHHHCCSCCC
T ss_pred EEEccccChHHhcCceEEEecCCeEEEEeCCCcc----CcceeeeeeccCHHHhhh----------hhHHHHhcCCeeCC
Confidence 44455556667777777775 566789999865 45688888 5544333 56688999998887
Q ss_pred h
Q psy5865 102 S 102 (113)
Q Consensus 102 ~ 102 (113)
.
T Consensus 125 ~ 125 (140)
T 2bw2_A 125 K 125 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=41.57 E-value=5.5 Score=34.75 Aligned_cols=14 Identities=50% Similarity=0.916 Sum_probs=0.0
Q ss_pred cccceeeecceeEE
Q psy5865 39 AEGAIFVTNYRIIF 52 (113)
Q Consensus 39 AEGAlFLTnYRvIF 52 (113)
-.|.+|||++||||
T Consensus 43 q~G~~yLTShRiiy 56 (566)
T 1w7p_D 43 QRGRIFLTSQRIIY 56 (566)
T ss_dssp --------------
T ss_pred cCceEEEEeeeEEE
Confidence 46999999999999
No 8
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=24.72 E-value=34 Score=25.44 Aligned_cols=16 Identities=13% Similarity=0.532 Sum_probs=14.5
Q ss_pred cccceeeecceeEEee
Q psy5865 39 AEGAIFVTNYRIIFKG 54 (113)
Q Consensus 39 AEGAlFLTnYRvIFkG 54 (113)
..|.||+|+=|++|..
T Consensus 42 g~GtLyVt~~~l~W~~ 57 (171)
T 1zyi_A 42 GTGTLYIAESRLSWLD 57 (171)
T ss_dssp CEEEEEEETTEEEEEE
T ss_pred CceEEEEEcCEEEEEc
Confidence 5799999999999984
No 9
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid, hydrolase, structural genomics, NPPSFA; NMR {Thermus thermophilus}
Probab=20.48 E-value=43 Score=19.42 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=15.2
Q ss_pred cCCCCCCCCccc--ccc--ceeeecceeEEe
Q psy5865 27 RKPAVPRTPLLP--AEG--AIFVTNYRIIFK 53 (113)
Q Consensus 27 ~~~~~~Gp~LLP--AEG--AlFLTnYRvIFk 53 (113)
..|...|..|-. -.| .+-+.+|||||+
T Consensus 38 ~~P~~~~~~l~g~~~~~~~~~rv~~yriiY~ 68 (89)
T 2khe_A 38 EDPRSLGEPLRGPELGRFWKYRVGDYRLICH 68 (89)
T ss_dssp SSSSSSEEECCCSSCCSCEEEEETTEEEEEE
T ss_pred cCCCccCccCcCCCCCCeEEEEECCEEEEEE
Confidence 455554433322 134 445678999997
No 10
>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A
Probab=18.88 E-value=15 Score=27.77 Aligned_cols=54 Identities=24% Similarity=0.328 Sum_probs=32.3
Q ss_pred cceeEEeeccCCCccccceeEeceeccccccchhhhhhhhhhhh---------hhhhhhhhhh
Q psy5865 47 NYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLD---------QSLQEGYQLR 100 (113)
Q Consensus 47 nYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki~~~~~~~~~---------~~l~eGLQLR 100 (113)
.-|+||-|.|+|+.++++++=+=+=+.+--..|.|..-+..+.. -.+.+|+.|.
T Consensus 27 ~~Riifl~~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIy 89 (205)
T 4gm2_A 27 SKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIV 89 (205)
T ss_dssp TTTEEEECSCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHH
T ss_pred cCCEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHH
Confidence 45999999999999888754433333332234455543444441 2256677665
Done!