RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5865
(113 letters)
>gnl|CDD|241362 cd13208, PH-GRAM_MTMR5_MTMR13, Myotubularian (MTM) related 5 and 13
proteins (MTMR5 and MTMR13) Pleckstrin
Homology-Glucosyltransferases, Rab-like GTPase
activators and Myotubularins (PH-GRAM) domain. MTMR5 is
a catalytically inactive phosphatase that plays a role
as an adapter for the phosphatase myotubularin to
regulate myotubularintracellular location. It lacks
several amino acids in the dsPTPase catalytic pocket
which renders it catalytically inactive as a
phosphatase. MTMR5 is the most well-studied inactive
member of this family and has been implicated in
cellular growth control and oncogenic transformation.
MTMR13 is a catalytically inactive phosphatase that
plays a role as an adapter for the phosphatase
myotubularin to regulate myotubularintracellular
location. It contains a Leu residue instead of a
conserved Cys residue in the dsPTPase catalytic loop
which renders it catalytically inactive as a
phosphatase. MTMR13 has high sequence similarity to
MTMR5 and has recently been shown to be a second gene
mutated in type 4B Charcot-Marie-Tooth syndrome. Both
MTMR5 and MTMR13 contain an N-terminal DENN domain, a
PH-GRAM domain, an inactive PTP domain, a SET
interaction domain, a coiled-coil domain, and a
C-terminal PH domain. Myotubularin-related proteins are
a subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date. Although the majority of the sequences
are MTMR 5 and 13, this cd also contains MTM5 nematode
sequences.
Length = 146
Score = 147 bits (372), Expect = 7e-47
Identities = 56/72 (77%), Positives = 63/72 (87%)
Query: 35 PLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQ 94
PLLPAEGA+F+TNYRIIFKGTP DP+ACEQ V R+FPI SL KEKKIT QYL+HL+Q LQ
Sbjct: 41 PLLPAEGALFLTNYRIIFKGTPCDPYACEQTVVRSFPIASLTKEKKITVQYLAHLEQKLQ 100
Query: 95 EGYQLRSSTFQV 106
EG QLRS TFQ+
Sbjct: 101 EGLQLRSCTFQL 112
>gnl|CDD|241494 cd13340, PH-GRAM_MTMR5, Myotubularian (MTM) related 5 protein
(MTMR5) Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR5 (also called SBF1/SET binding factor 1)
is a catalytically inactive phosphatase that plays a
role as an adapter for the phosphatase myotubularin to
regulate myotubularintracellular location. It lacks
several amino acids in the dsPTPase catalytic pocket
which renders it catalytically inactive as a
phosphatase. MTMR5 is the most well-studied inactive
member of this family and has been implicated in
cellular growth control and oncogenic transformation.
MTMR5 and MTMR13 contain an N-terminal DENN domain, a
PH-GRAM domain, an inactive PTP domain, a SET
interaction domain, a coiled-coil domain, and a
C-terminal PH domain. Myotubularin-related proteins are
a subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 185
Score = 109 bits (274), Expect = 1e-31
Identities = 48/72 (66%), Positives = 57/72 (79%), Gaps = 2/72 (2%)
Query: 35 PLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQ 94
PLLPAEGAIF+T YR+IFKGTP DP EQVV R+FP+ SL KEK+I+ Q + +DQ LQ
Sbjct: 62 PLLPAEGAIFLTTYRVIFKGTPTDPLVGEQVVVRSFPVASLTKEKRISVQ--AQVDQFLQ 119
Query: 95 EGYQLRSSTFQV 106
EG QLRS TFQ+
Sbjct: 120 EGLQLRSCTFQL 131
>gnl|CDD|241493 cd13339, PH-GRAM_MTMR13, Myotubularian (MTM) related 13 protein
Pleckstrin Homology-Glucosyltransferases, Rab-like
GTPase activators and Myotubularins (PH-GRAM) domain.
MTMR13 (also called SBF2/SET binding factor 2) is a
catalytically inactive phosphatase that plays a role as
an adapter for the phosphatase myotubularin to regulate
myotubularintracellular location. It contains a Leu
residue instead of a conserved Cys residue in the
dsPTPase catalytic loop which renders it catalytically
inactive as a phosphatase. MTMR13 has high sequence
similarity to MTMR5 and has recently been shown to be a
second gene mutated in type 4B Charcot-Marie-Tooth
syndrome. Both MTMR5 and MTMR13 contain an N-terminal
DENN domain, a PH-GRAM domain, an inactive PTP domain, a
SET interaction domain, a coiled-coil domain, and a
C-terminal PH domain. Myotubularin-related proteins are
a subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 184
Score = 93.1 bits (231), Expect = 3e-25
Identities = 42/71 (59%), Positives = 54/71 (76%), Gaps = 2/71 (2%)
Query: 36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
+LPAEGA+F+T YRIIFKGTP D EQ V R+FPI S+ KEKKIT Q + L Q++QE
Sbjct: 62 ILPAEGALFLTTYRIIFKGTPHDQLVGEQTVIRSFPIASITKEKKITIQ--NQLQQNMQE 119
Query: 96 GYQLRSSTFQV 106
G Q+ S++FQ+
Sbjct: 120 GLQITSASFQL 130
>gnl|CDD|217271 pfam02893, GRAM, GRAM domain. The GRAM domain is found in in
glucosyltransferases, myotubularins and other putative
membrane-associated proteins.
Length = 60
Score = 39.5 bits (93), Expect = 1e-05
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 34 TPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKIT 82
P+ P +G +++TN R+ F+ + P+ + + +K
Sbjct: 17 RPISPVQGRLYLTNNRLCFRSDKFGD-----LTVLVIPLADIERVEKEK 60
>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. Myotubularin-related proteins are a subfamily
of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is
part of a larger motif with a pleckstrin homology (PH)
domain fold.
Length = 94
Score = 38.4 bits (90), Expect = 7e-05
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 37 LPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQ 84
P EG +++TNYR+ FK D P+ +++ +K+
Sbjct: 15 GPVEGTLYLTNYRLYFKSKERDS-----PTELDVPLGVISRVEKVGGS 57
>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins
and other putative membrane-associated proteins.
Length = 60
Score = 36.8 bits (86), Expect = 1e-04
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKIT 82
P +G ++++NYR+ F+ P+ + + +K T
Sbjct: 19 TGPVQGRLYISNYRLCFRSNLPGKL-----TKVVIPLADITRIEKST 60
>gnl|CDD|241377 cd13223, PH-GRAM_MTM-like, Myotubularian 1 and related proteins
Pleckstrin Homology-Glucosyltransferases, Rab-like
GTPase. MTM1, MTMR1, and MTMR2 are members of the
myotubularin protein phosphatase gene family. They
contain a N-terminal PH-GRAM domain, a Rac-induced
recruitment domain (RID) domain, an active PTP domain,
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition MTMR1 (Myotubularian related 1
protein) and MTMR2 (Myotubularian related 2 protein)
contain a C-terminal PDZ domain. Mutations in MTMR2 are
a cause of Charcot-Marie-Tooth disease type 4B, an
autosomal recessive demyelinating neuropathy. The
protein can self-associate and form heteromers with
MTMR5 and MTMR12. Myotubularin-related proteins are a
subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids. The
GRAM domain, found in myotubularins,
glucosyltransferases, and other putative
membrane-associated proteins, is part of a larger motif
with a pleckstrin homology (PH) domain fold. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is
part of a larger motif with a pleckstrin homology (PH)
domain fold. The PH domain family possesses multiple
functions including the ability to bind
phosphoinositides via its beta1/beta2, beta3/beta4, and
beta6/beta7 connecting loops and to other proteins.
However, no phosphoinositide binding sites have been
found for the MTMRs to date.
Length = 94
Score = 31.0 bits (71), Expect = 0.037
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 38 PAEGAIFVTNYRIIFKGTPLDP 59
P +G +++TNYR+ FK DP
Sbjct: 15 PVKGTLYITNYRLYFKSLERDP 36
>gnl|CDD|241511 cd13357, PH-GRAM_MTMR2_insect-like, Myotubularian related 2
protein (MTMR2) Pleckstrin
Homology-Glucosyltransferases, Rab-like GTPase
activators and Myotubularins (PH-GRAM) domain. MTMR2
is a member of the myotubularin protein phosphatase
gene family. MTMR2 binds to phosphoinositide lipids
through its PH-GRAM domain, and can hydrolyze
phosphatidylinositol(3)-phosphate and
phosphatidylinositol(3,5)-biphosphate in vitro.
Mutations in MTMR2 are a cause of Charcot-Marie-Tooth
disease type 4B, an autosomal recessive demyelinating
neuropathy. The protein can self-associate and form
heteromers with MTMR5 and MTMR12. MTMR2 contains a
N-terminal PH-GRAM domain, a Rac-induced recruitment
domain (RID) domain, an active PTP domain, a
SET-interaction domain, a coiled-coil region, and a
C-terminal PDZ domain. Myotubularin-related proteins
are a subfamily of protein tyrosine phosphatases (PTPs)
that dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is
part of a larger motif with a pleckstrin homology (PH)
domain fold. The PH domain family possesses multiple
functions including the ability to bind
phosphoinositides via its beta1/beta2, beta3/beta4, and
beta6/beta7 connecting loops and to other proteins.
However, no phosphoinositide binding sites have been
found for the MTMRs to date. Members in this cd include
Drosophila, sea urchins, mosquitos, bees, ticks, and
anemones.
Length = 148
Score = 30.1 bits (68), Expect = 0.14
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 38 PAEGAIFVTNYRIIFKGTPLDP 59
P G + +TNY++ F+ +P
Sbjct: 33 PVRGTLTITNYKLYFRSLDKEP 54
>gnl|CDD|241509 cd13355, PH-GRAM_MTM1, Myotubularian 1 protein (MTM1) Pleckstrin
Homology-Glucosyltransferases, Rab-like GTPase
activators and Myotubularins (PH-GRAM) domain. MTM1 is
a member of the myotubularin protein phosphatase gene
family. It is required for muscle cell differentiation
and mutations in this gene have been identified as
being responsible for X-linked myotubular myopathy, a
severe congenital muscle disorder characterized by
defective muscle cell development. Since its initial
discovery, there have been an additional 14
myotubularin-related proteins identified. MTM1 binds to
phosphoinositide lipids through its PH-GRAM domain, and
can hydrolyze phosphatidylinositol(3)-phosphate and
phosphatidylinositol(3,5)-biphosphate in vitro. The
protein can self-associate and form heteromers with
MTMR12. MTM1 contains a N-terminal PH-GRAM domain, a
Rac-induced recruitment domain (RID) domain, an active
PTP domain, a SET-interaction domain, and a C-terminal
coiled-coil region. Myotubularin-related proteins are a
subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. The GRAM domain, found in
myotubularins, glucosyltransferases, and other putative
membrane-associated proteins, is part of a larger motif
with a pleckstrin homology (PH) domain fold. All MTMRs
contain a N-terminal PH-GRAM domain, a Rac-induced
recruitment domain (RID) domain, a PTP domain (which
may be active or inactive), a SET-interaction domain,
and a C-terminal coiled-coil region. In addition some
members contain DENN domain N-terminal to the PH-GRAM
domain and FYVE and PH domains C-terminal to the
coiled-coil region.
Length = 152
Score = 29.3 bits (66), Expect = 0.24
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 38 PAEGAIFVTNYRIIFKGTPLDP 59
P +G +++TNYR+ F+ DP
Sbjct: 48 PVKGRVYITNYRLYFRSLEADP 69
>gnl|CDD|241368 cd13214, PH-GRAM_WBP2, WW binding protein 2 (WB2) Pleckstrin
Homology-Glucosyltransferases, Rab-like GTPase
activators and Myotubularins (PH-GRAM) domain. WBP2
plays a number of roles including: acting as a tyrosine
kinase substrate, activation of estrogen receptor alpha
(ERalpha)/progesterone receptor (PR) transcription, and
playing a role in breast cancer. WBP2 contain a
N-terminal PH-GRAM domain and a C-terminal WWbp domain.
The GRAM domain, found in myotubularins,
glucosyltransferases, and other putative
membrane-associated proteins, is part of a larger motif
with a pleckstrin homology (PH) domain fold. The WWbp
domain is characterized by several short PY and PT-like
motifs of the PPPPY form and binds to WW domains. WW
domains contain two highly conserved tryptophans that
are spaced 20-23 residues apart. They bind proline-rich
peptide motifs [AP]-P-P-[AP]-Y, and/or phosphoserine-
phosphothreonine-containing motifs.
Length = 106
Score = 28.6 bits (65), Expect = 0.31
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 39 AEGAIFVTNYRIIF-KGTPLDPF 60
+G +++TN R+IF P D F
Sbjct: 16 KKGRLYLTNQRLIFVPKKPTDAF 38
>gnl|CDD|237742 PRK14513, PRK14513, ATP-dependent Clp protease proteolytic
subunit; Provisional.
Length = 201
Score = 26.8 bits (59), Expect = 2.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 49 RIIFKGTPLDPFACEQVVTRAFPITSLNKEKKI 81
RIIF GTP++ +V + + S N E++I
Sbjct: 28 RIIFVGTPIESQMANTIVAQLLLLDSQNPEQEI 60
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 26.7 bits (59), Expect = 2.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 43 IFVTNYRIIFKGTPL 57
+F TNYR++ GTPL
Sbjct: 316 LFSTNYRLLITGTPL 330
>gnl|CDD|235793 PRK06394, rpl13p, 50S ribosomal protein L13P; Reviewed.
Length = 146
Score = 26.4 bits (59), Expect = 3.1
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 13 ERLKIRSVYNNIYRRKPAVPRTP 35
+R + S YN YR P PR P
Sbjct: 54 QRRERGSHYNP-YRNGPKYPRRP 75
>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 25.6 bits (56), Expect = 7.9
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 7/26 (26%)
Query: 22 NNIYRRKPAVPRTP-------LLPAE 40
N++ RRK PRTP L PAE
Sbjct: 277 NDVDRRKELFPRTPTGREHWTLAPAE 302
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.372
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,540,162
Number of extensions: 463198
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 24
Length of query: 113
Length of database: 10,937,602
Length adjustment: 77
Effective length of query: 36
Effective length of database: 7,522,344
Effective search space: 270804384
Effective search space used: 270804384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)