RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5865
(113 letters)
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex,
hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8
c.45.1.3 PDB: 1zvr_A*
Length = 528
Score = 36.4 bits (83), Expect = 9e-04
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 38 PAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGY 97
G + VTNYR+ FK DP + +N+ +KI + G
Sbjct: 31 AVRGTLTVTNYRLYFKSMERDP-----PFVLDASLGVINRVEKIGG---ASSRGENSYGL 82
Query: 98 QLRSSTFQV 106
+ +
Sbjct: 83 ETVCKDIRN 91
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Length = 512
Score = 34.5 bits (78), Expect = 0.004
Identities = 6/48 (12%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 13 ERLKIRSVYNNIYRRKPAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPF 60
E ++ V + + L G +++T ++F +
Sbjct: 2 EHIRTTKVEQVKLLDRFSTSNKSL---TGTLYLTATHLLFIDSHQKET 46
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 33.4 bits (75), Expect = 0.009
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 38 PAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGY 97
G + VTNYR+ FK DP + +N+ +KI + G
Sbjct: 103 AVRGTLTVTNYRLYFKSMERDP-----PFVLDASLGVINRVEKIGG---ASSRGENSYGL 154
Query: 98 QLRSSTFQV 106
+ +
Sbjct: 155 ETVCKDIRN 163
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.34
Identities = 25/130 (19%), Positives = 39/130 (30%), Gaps = 47/130 (36%)
Query: 3 YTA-----SSLNYSVERLKIRSVYNNIYR---RKPAVPRTPLLPAEGAIFVTNYRIIFKG 54
Y A + S+E L + V+ YR + AVPR L + + N +
Sbjct: 1767 YAALASLADVM--SIESL-VEVVF---YRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 55 TPLDPFA-------------CE---------QVV----TRAF----PITSLNKEKKITSQ 84
+ E Q V RA + + K +KI
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID-- 1878
Query: 85 YLSHLDQSLQ 94
+ L +SL
Sbjct: 1879 -IIELQKSLS 1887
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 26.1 bits (57), Expect = 3.3
Identities = 13/82 (15%), Positives = 21/82 (25%), Gaps = 24/82 (29%)
Query: 34 TPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSL 93
L F+ NY I ++ I + S + + SL
Sbjct: 517 DQLPVDVQNGFIRNYTIFYR-----------------TIIGNETAVNVDSSHTEYTLSSL 559
Query: 94 QEG--YQLRSSTFQVTALTSMG 113
Y ++ A T G
Sbjct: 560 TSDTLY-----MVRMAAYTDEG 576
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein,
bacillu structural genomics, PSI, protein structure
initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9
a.121.1.1
Length = 192
Score = 24.9 bits (55), Expect = 5.4
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 41 GAIFVTNYRIIFKGTPLDPFACEQVVTRAF 70
G IF YR++ G LD +V AF
Sbjct: 160 GPIF---YRLLVTGEKLDDSYVHDLVINAF 186
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2,
prote structure initiative; 1.70A {Streptomyces
coelicolor} SCOP: a.4.1.9 a.121.1.1
Length = 225
Score = 24.9 bits (55), Expect = 7.0
Identities = 4/31 (12%), Positives = 10/31 (32%), Gaps = 3/31 (9%)
Query: 41 GAIFVTNYRIIFKGTPLDPFACEQVVTRAFP 71
++ Y ++ G L ++ A
Sbjct: 188 APLY---YALLNTGRSLTEADADRAARAAST 215
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 25.0 bits (55), Expect = 8.0
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 72 ITSLNKEKKITSQYLSHLDQSLQEG 96
+ SL +E+K + Y L +
Sbjct: 903 VVSLTREQKFETMYAQSLQIPYRNA 927
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I
3jyv_I*
Length = 143
Score = 24.5 bits (54), Expect = 8.3
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 10/58 (17%)
Query: 26 RRKPAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACE---QVVTRAFPITSLNKEKK 80
++K A + +G I V N G+P+ E V + L+K
Sbjct: 12 KKKSATAVAHVKAGKGLIKV-N------GSPITLVEPEILRFKVYEPLLLVGLDKFSN 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.372
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,579,982
Number of extensions: 80591
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 18
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)