RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5865
         (113 letters)



>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2,
           N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 125

 Score = 48.0 bits (114), Expect = 6e-09
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 8/69 (11%)

Query: 38  PAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGY 97
              G + VTNYR+ FK    DP            +  +N+ +KI        +     G 
Sbjct: 27  AVRGTLTVTNYRLYFKSMERDP-----PFVLDASLGVINRVEKIGGASSRGEN---SYGL 78

Query: 98  QLRSSTFQV 106
           +      + 
Sbjct: 79  ETVCKDIRN 87


>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator
           SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
          Length = 123

 Score = 26.0 bits (57), Expect = 0.76
 Identities = 4/23 (17%), Positives = 8/23 (34%)

Query: 48  YRIIFKGTPLDPFACEQVVTRAF 70
           Y ++  G  L     ++    A 
Sbjct: 90  YALLNTGRSLTEADADRAARAAS 112


>d1htjf_ a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 182

 Score = 25.6 bits (56), Expect = 1.4
 Identities = 8/37 (21%), Positives = 15/37 (40%)

Query: 76  NKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTSM 112
            +E+++  + L+ L   L      RS+       T M
Sbjct: 139 LRERQVAEKQLAALGDILSAYAADRSAPMDFALNTYM 175


>d2fq4a2 a.121.1.1 (A:78-192) Transcriptional regulator BC3163
           {Bacillus cereus [TaxId: 1396]}
          Length = 115

 Score = 24.9 bits (54), Expect = 1.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 48  YRIIFKGTPLDPFACEQVVTRAF 70
           YR++  G  LD      +V  AF
Sbjct: 87  YRLLVTGEKLDDSYVHDLVINAF 109


>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus
          thermophilus [TaxId: 274]}
          Length = 127

 Score = 23.8 bits (51), Expect = 5.7
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 26 RRKPAVPRTPLLPAEGAIFVTNYRI 50
          RRK AV R  L P  G + V     
Sbjct: 8  RRKEAVARVFLRPGNGKVTVNGQDF 32


>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
           protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
           2234]}
          Length = 240

 Score = 23.8 bits (51), Expect = 6.0
 Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 43  IFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITS 83
             + N RI+ KG   + F+ +      F +++ N   K++ 
Sbjct: 198 AVMLNGRIVEKGKLKELFSAKNGEVAEF-LSARNLLLKVSK 237


>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting
          protein 36, VPS36 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 130

 Score = 23.3 bits (50), Expect = 7.6
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 41 GAIFVTNYRIIFKGTPLDPFAC 62
          G IF+T+ RII+          
Sbjct: 45 GRIFLTSQRIIYIDDAKPTQNS 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 380,432
Number of extensions: 15766
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 9
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)