Query psy5866
Match_columns 98
No_of_seqs 102 out of 1109
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 20:01:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05771 IgC_Tapasin_R Tapasin- 99.5 2.9E-13 6.3E-18 78.4 9.0 75 17-97 2-77 (139)
2 PHA02785 IL-beta-binding prote 99.3 1.1E-10 2.3E-15 76.2 10.4 79 17-97 178-260 (326)
3 PHA02826 IL-1 receptor-like pr 99.2 1.9E-10 4.1E-15 71.7 9.4 71 15-97 97-171 (227)
4 KOG3513|consensus 99.2 1.3E-10 2.8E-15 83.8 8.5 76 15-97 293-368 (1051)
5 KOG4194|consensus 99.1 5.8E-10 1.3E-14 77.0 8.3 83 6-97 661-744 (873)
6 PHA03376 BARF1; Provisional 99.0 7.2E-09 1.6E-13 62.4 9.3 87 2-96 73-160 (221)
7 cd05762 Ig8_MLCK Eighth immuno 99.0 5.2E-09 1.1E-13 57.3 6.9 52 6-61 46-97 (98)
8 KOG3513|consensus 98.9 1.8E-08 3.8E-13 73.1 10.1 75 16-97 479-555 (1051)
9 KOG4194|consensus 98.9 6.2E-09 1.3E-13 72.1 6.5 75 17-97 575-649 (873)
10 KOG4221|consensus 98.9 8.3E-09 1.8E-13 75.4 6.9 75 16-97 291-365 (1381)
11 cd05854 Ig6_Contactin-2 Sixth 98.8 4.9E-08 1.1E-12 52.1 6.5 41 14-58 45-85 (85)
12 cd05735 Ig8_DSCAM Eight immuno 98.8 4.3E-08 9.3E-13 52.6 6.1 42 16-61 47-88 (88)
13 cd05853 Ig6_Contactin-4 Sixth 98.8 2E-08 4.3E-13 53.7 4.3 39 16-58 47-85 (85)
14 KOG4221|consensus 98.8 1.4E-07 3E-12 69.3 9.8 85 6-97 186-274 (1381)
15 PHA02785 IL-beta-binding prote 98.7 1.2E-07 2.5E-12 62.1 8.1 75 17-96 83-162 (326)
16 cd05748 Ig_Titin_like Immunogl 98.7 1.4E-07 3.1E-12 48.7 6.3 45 5-53 29-73 (74)
17 cd04970 Ig6_Contactin_like Six 98.7 1E-07 2.2E-12 50.7 5.6 40 15-58 46-85 (85)
18 cd05892 Ig_Myotilin_C C-termin 98.7 1.6E-07 3.5E-12 49.0 6.1 46 5-54 29-75 (75)
19 cd05888 Ig1_Nectin-4_like Frst 98.7 2E-07 4.4E-12 51.1 6.8 42 10-54 58-99 (100)
20 cd05886 Ig1_Nectin-1_like Firs 98.7 1.9E-07 4.2E-12 51.2 6.5 49 4-55 50-99 (99)
21 cd05713 Ig_MOG_like Immunoglob 98.6 2.2E-07 4.8E-12 50.7 6.3 39 12-54 61-99 (100)
22 cd05881 Ig1_Necl-2 First (N-te 98.6 2.1E-07 4.5E-12 50.7 5.8 43 5-52 50-93 (95)
23 cd05870 Ig5_NCAM-2 Fifth immun 98.6 1.9E-07 4.2E-12 50.9 5.6 44 6-53 54-97 (98)
24 cd05866 Ig1_NCAM-2 First immun 98.6 2.3E-07 5E-12 50.3 5.7 47 5-54 45-91 (92)
25 cd05887 Ig1_Nectin-3_like Firs 98.6 2.8E-07 6.1E-12 50.3 6.0 47 5-54 48-95 (96)
26 cd05879 Ig_P0 Immunoglobulin ( 98.6 2.7E-07 5.9E-12 52.0 6.0 30 10-40 74-103 (116)
27 PF07679 I-set: Immunoglobulin 98.6 2E-07 4.4E-12 49.6 5.3 45 6-54 46-90 (90)
28 cd05893 Ig_Palladin_C C-termin 98.6 3.5E-07 7.6E-12 47.7 5.8 46 5-54 29-75 (75)
29 cd05878 Ig_Aggrecan_like Immun 98.6 4.8E-07 1E-11 50.5 6.4 46 6-55 59-107 (110)
30 cd05718 Ig1_PVR_like First imm 98.6 6.8E-07 1.5E-11 48.5 6.9 38 14-54 60-97 (98)
31 cd05743 Ig_Perlecan_D2_like Im 98.5 3.4E-07 7.3E-12 47.9 5.4 33 6-39 32-64 (78)
32 KOG4222|consensus 98.5 1.3E-07 2.9E-12 69.0 5.0 74 17-96 188-261 (1281)
33 cd05894 Ig_C5_MyBP-C C5 immuno 98.5 6.3E-07 1.4E-11 47.9 6.3 44 6-53 42-85 (86)
34 cd05775 Ig_SLAM-CD84_like_N N- 98.5 5.3E-07 1.1E-11 49.2 6.1 43 9-54 54-96 (97)
35 cd05714 Ig_CSPGs_LP Immunoglob 98.5 6E-07 1.3E-11 49.5 6.1 41 11-55 63-103 (106)
36 cd05732 Ig5_NCAM-1_like Fifth 98.5 7.1E-07 1.5E-11 48.2 6.2 43 7-53 53-95 (96)
37 cd05861 Ig1_PDGFR-alphabeta Fr 98.5 1E-06 2.2E-11 46.8 6.6 40 14-55 44-83 (84)
38 cd05900 Ig_Aggrecan Immunoglob 98.5 5.6E-07 1.2E-11 50.5 5.6 45 6-54 61-108 (112)
39 cd05889 Ig1_DNAM-1_like First 98.5 9.8E-07 2.1E-11 48.2 6.2 46 5-55 48-94 (96)
40 cd05882 Ig1_Necl-1 First (N-te 98.5 6.7E-07 1.5E-11 48.7 5.4 26 12-38 58-83 (95)
41 cd07701 Ig1_Necl-3 First (N-te 98.5 8.9E-07 1.9E-11 48.2 5.8 33 6-39 51-84 (95)
42 cd05902 Ig_Neurocan Immunoglob 98.5 1.1E-06 2.3E-11 49.2 6.1 47 5-55 58-107 (110)
43 cd05863 Ig2_VEGFR-3 Second imm 98.4 1.1E-06 2.5E-11 44.9 5.6 38 14-55 29-66 (67)
44 cd05717 Ig1_Necl-1-3_like Firs 98.4 8.5E-07 1.8E-11 48.0 5.4 27 12-39 58-84 (95)
45 cd05744 Ig_Myotilin_C_like Imm 98.4 1.3E-06 2.9E-11 45.4 5.8 37 13-53 38-74 (75)
46 cd05763 Ig_1 Subgroup of the i 98.4 1.5E-06 3.2E-11 45.0 5.9 34 17-54 41-74 (75)
47 cd05715 Ig_P0-like Immunoglobu 98.4 1.3E-06 2.7E-11 49.1 5.8 30 10-40 74-103 (116)
48 cd05846 Ig1_MRC-OX-2_like Firs 98.4 1.9E-06 4.1E-11 46.9 6.2 42 10-54 55-96 (97)
49 cd05737 Ig_Myomesin_like_C C-t 98.4 1.4E-06 3E-11 47.0 5.6 25 14-39 56-80 (92)
50 cd05858 Ig3_FGFR-2 Third immun 98.4 7.2E-07 1.6E-11 47.9 4.4 35 16-54 55-89 (90)
51 cd05852 Ig5_Contactin-1 Fifth 98.4 1.3E-06 2.8E-11 45.3 5.1 33 17-53 40-72 (73)
52 cd05877 Ig_LP_like Immunoglobu 98.4 2E-06 4.4E-11 47.4 6.1 45 6-54 57-102 (106)
53 cd05869 Ig5_NCAM-1 Fifth immun 98.4 2E-06 4.3E-11 46.8 6.0 36 14-53 61-96 (97)
54 cd05901 Ig_Versican Immunoglob 98.4 2.5E-06 5.5E-11 48.1 6.4 41 11-55 74-114 (117)
55 cd05880 Ig_EVA1 Immunoglobulin 98.4 1.6E-06 3.5E-11 48.7 5.5 30 10-40 73-102 (115)
56 cd05865 Ig1_NCAM-1 First immun 98.4 1.9E-06 4.2E-11 47.0 5.6 37 15-54 59-95 (96)
57 cd05725 Ig3_Robo Third immunog 98.4 8.1E-07 1.8E-11 45.3 3.9 34 16-53 35-68 (69)
58 cd04976 Ig2_VEGFR Second immun 98.4 1.4E-06 3E-11 44.8 4.7 37 15-55 34-70 (71)
59 cd04974 Ig3_FGFR Third immunog 98.4 6.8E-07 1.5E-11 48.0 3.7 36 15-54 54-89 (90)
60 cd05726 Ig4_Robo Fhird immunog 98.3 3.5E-06 7.6E-11 45.2 6.3 36 17-56 48-83 (90)
61 cd05876 Ig3_L1-CAM Third immun 98.3 1.6E-06 3.5E-11 44.5 4.6 36 15-54 35-70 (71)
62 cd05765 Ig_3 Subgroup of the i 98.3 1.5E-06 3.2E-11 45.5 4.5 34 16-53 47-80 (81)
63 cd05742 Ig1_VEGFR_like First i 98.3 1.8E-06 3.9E-11 45.7 4.9 37 14-54 47-83 (84)
64 cd04977 Ig1_NCAM-1_like First 98.3 4.2E-06 9.1E-11 45.1 6.3 27 12-39 53-79 (92)
65 cd07690 Ig1_CD4 First immunogl 98.3 4.3E-07 9.4E-12 49.4 2.3 27 12-39 61-87 (94)
66 cd05747 Ig5_Titin_like M5, fif 98.3 3.5E-06 7.6E-11 45.3 5.7 33 6-39 49-81 (92)
67 cd05745 Ig3_Peroxidasin Third 98.3 1.3E-06 2.9E-11 45.1 3.9 34 16-53 40-73 (74)
68 PF07686 V-set: Immunoglobulin 98.3 6.4E-06 1.4E-10 45.2 6.8 46 6-54 69-114 (114)
69 cd05730 Ig3_NCAM-1_like Third 98.3 3.6E-06 7.9E-11 45.4 5.6 36 16-55 58-93 (95)
70 KOG4222|consensus 98.3 1.6E-06 3.5E-11 63.6 5.2 75 16-97 278-352 (1281)
71 cd05895 Ig_Pro_neuregulin-1 Im 98.3 5.7E-06 1.2E-10 42.9 6.1 27 13-40 41-67 (76)
72 cd04968 Ig3_Contactin_like Thi 98.3 2.7E-06 5.8E-11 45.4 4.9 36 15-54 52-87 (88)
73 cd05741 Ig_CEACAM_D1_like Firs 98.3 4.3E-06 9.2E-11 44.8 5.7 23 16-39 57-79 (92)
74 cd05760 Ig2_PTK7 Second immuno 98.3 3.2E-06 6.9E-11 44.1 5.0 37 16-54 38-74 (77)
75 cd04969 Ig5_Contactin_like Fif 98.3 1.8E-06 3.9E-11 44.5 3.9 33 17-53 40-72 (73)
76 cd05731 Ig3_L1-CAM_like Third 98.3 2.8E-06 6E-11 43.3 4.6 36 15-54 35-70 (71)
77 cd04975 Ig4_SCFR_like Fourth i 98.3 3.3E-06 7.2E-11 46.5 5.1 37 15-55 64-100 (101)
78 cd05864 Ig2_VEGFR-2 Second imm 98.3 3.4E-06 7.4E-11 43.4 4.8 23 16-39 34-56 (70)
79 cd05857 Ig2_FGFR Second immuno 98.3 4.9E-06 1.1E-10 43.9 5.6 36 14-53 49-84 (85)
80 cd05867 Ig4_L1-CAM_like Fourth 98.3 3.3E-06 7E-11 43.9 4.7 35 16-54 41-75 (76)
81 cd05740 Ig_CEACAM_D4 Fourth im 98.2 3.6E-06 7.9E-11 45.4 4.9 37 15-54 54-90 (91)
82 cd05851 Ig3_Contactin-1 Third 98.2 3.7E-06 8E-11 45.0 4.9 35 16-54 53-87 (88)
83 cd05859 Ig4_PDGFR-alpha Fourth 98.2 3.6E-06 7.8E-11 46.3 4.8 36 16-55 65-100 (101)
84 cd05891 Ig_M-protein_C C-termi 98.2 5.4E-06 1.2E-10 44.7 5.4 24 15-39 57-80 (92)
85 cd04978 Ig4_L1-NrCAM_like Four 98.2 4.1E-06 8.8E-11 43.3 4.6 35 16-54 41-75 (76)
86 cd05856 Ig2_FGFRL1-like Second 98.2 3.8E-06 8.3E-11 43.8 4.5 26 13-39 45-70 (82)
87 cd05746 Ig4_Peroxidasin Fourth 98.2 6E-06 1.3E-10 42.1 5.0 23 16-39 36-58 (69)
88 cd04983 IgV_TCR_alpha_like Imm 98.2 9.3E-06 2E-10 44.8 6.1 29 10-39 64-92 (109)
89 cd04972 Ig_TrkABC_d4 Fourth do 98.2 1E-05 2.2E-10 43.3 6.0 37 13-53 53-89 (90)
90 cd05723 Ig4_Neogenin Fourth im 98.2 1E-05 2.3E-10 41.4 5.7 33 17-53 38-70 (71)
91 cd05736 Ig2_Follistatin_like S 98.2 5.4E-06 1.2E-10 43.0 4.6 35 16-54 39-73 (76)
92 cd05868 Ig4_NrCAM Fourth immun 98.2 5.7E-06 1.2E-10 43.1 4.6 34 17-54 42-75 (76)
93 cd05712 Ig_Siglec_N Immunoglob 98.2 1.1E-05 2.3E-10 45.6 6.0 32 6-38 68-101 (119)
94 cd04973 Ig1_FGFR First immunog 98.2 9.2E-06 2E-10 42.5 5.2 22 17-39 46-67 (79)
95 cd05862 Ig1_VEGFR First immuno 98.1 8.8E-06 1.9E-10 43.4 5.1 37 15-55 49-85 (86)
96 cd04971 Ig_TrKABC_d5 Fifth dom 98.1 1.2E-05 2.7E-10 42.4 5.5 24 15-39 45-68 (81)
97 cd07702 Ig2_VEGFR-1 Second imm 98.1 6.8E-06 1.5E-10 42.6 4.2 23 16-39 36-58 (72)
98 cd05750 Ig_Pro_neuregulin Immu 98.1 1.8E-05 3.9E-10 40.6 5.6 26 13-39 40-65 (75)
99 cd05855 Ig_TrkB_d5 Fifth domai 98.1 1.9E-05 4E-10 41.7 5.6 25 14-39 42-66 (79)
100 cd05773 Ig8_hNephrin_like Eigh 98.1 2.7E-05 5.9E-10 43.3 6.6 40 15-58 68-108 (109)
101 cd05870 Ig5_NCAM-2 Fifth immun 98.1 1E-05 2.2E-10 44.0 4.8 36 61-97 3-38 (98)
102 cd05764 Ig_2 Subgroup of the i 98.1 9E-06 1.9E-10 41.8 4.0 33 17-53 41-73 (74)
103 cd00099 IgV Immunoglobulin var 98.1 1E-05 2.2E-10 44.2 4.4 27 12-39 63-89 (105)
104 cd05756 Ig1_IL1R_like First im 98.0 1E-05 2.3E-10 43.9 4.2 34 16-53 60-93 (94)
105 smart00406 IGv Immunoglobulin 98.0 7.7E-06 1.7E-10 42.4 3.4 31 5-36 49-81 (81)
106 cd05734 Ig7_DSCAM Seventh immu 98.0 1.4E-05 3.1E-10 41.7 4.4 24 16-40 44-67 (79)
107 PHA03269 envelope glycoprotein 98.0 0.00014 3.1E-09 49.7 9.6 83 10-97 283-367 (566)
108 cd05757 Ig2_IL1R_like Second i 98.0 2.9E-05 6.3E-10 42.0 5.2 25 15-40 51-75 (92)
109 cd05851 Ig3_Contactin-1 Third 98.0 2.6E-05 5.6E-10 41.7 4.7 30 67-97 9-38 (88)
110 cd05738 Ig2_RPTP_IIa_LAR_like 97.9 2E-05 4.2E-10 40.7 4.0 35 17-54 39-73 (74)
111 cd05728 Ig4_Contactin-2-like F 97.9 1.8E-05 4E-10 41.9 3.9 33 17-53 52-84 (85)
112 cd05729 Ig2_FGFR_like Second i 97.9 0.00011 2.3E-09 38.4 6.5 37 13-53 48-84 (85)
113 cd07693 Ig1_Robo First immunog 97.9 4.4E-05 9.5E-10 41.1 5.1 30 67-97 9-38 (100)
114 cd05732 Ig5_NCAM-1_like Fifth 97.9 2.6E-05 5.5E-10 42.0 3.9 36 61-97 3-38 (96)
115 smart00409 IG Immunoglobulin. 97.9 9.6E-05 2.1E-09 37.9 6.0 28 11-39 46-73 (86)
116 smart00410 IG_like Immunoglobu 97.9 9.6E-05 2.1E-09 37.9 6.0 28 11-39 46-73 (86)
117 cd05871 Ig_Semaphorin_classIII 97.9 4.2E-05 9.1E-10 41.2 4.7 37 16-55 53-89 (91)
118 cd05724 Ig2_Robo Second immuno 97.9 3.4E-05 7.3E-10 40.7 4.3 24 16-40 51-74 (86)
119 cd04984 IgV_L_lambda Immunoglo 97.9 2.6E-05 5.6E-10 42.4 3.9 33 5-38 52-84 (98)
120 KOG3515|consensus 97.9 2.4E-05 5.2E-10 55.9 4.4 80 17-97 164-244 (741)
121 cd05772 IgC_SIRP Signal-regula 97.8 4.3E-05 9.2E-10 42.8 4.4 43 54-97 2-45 (111)
122 cd05716 Ig_pIgR Immunoglobulin 97.8 3.2E-05 7E-10 41.9 3.7 29 10-39 58-86 (98)
123 cd05897 Ig2_IL1R2_like Second 97.8 7.3E-05 1.6E-09 40.7 4.8 25 16-41 55-79 (95)
124 cd07706 IgV_TCR_delta Immunogl 97.8 5.6E-05 1.2E-09 42.3 4.5 34 5-39 59-94 (116)
125 cd05753 Ig2_FcgammaR_like Seco 97.8 4.9E-05 1.1E-09 40.3 3.8 25 14-39 46-70 (83)
126 cd04980 IgV_L_kappa Immunoglob 97.8 3.9E-05 8.4E-10 42.3 3.6 32 6-38 61-92 (106)
127 cd04979 Ig_Semaphorin_C Immuno 97.8 7E-05 1.5E-09 39.9 4.4 36 17-55 52-87 (89)
128 cd05774 Ig_CEACAM_D1 First imm 97.8 0.00016 3.6E-09 40.0 5.9 23 16-39 70-92 (105)
129 cd05720 Ig_CD8_alpha Immunoglo 97.8 5.2E-05 1.1E-09 41.8 3.8 33 5-38 58-90 (104)
130 cd05873 Ig_Sema4D_like Immunog 97.7 9E-05 1.9E-09 39.7 4.5 22 17-39 49-70 (87)
131 cd05899 IgV_TCR_beta Immunoglo 97.7 7.7E-05 1.7E-09 41.3 4.5 34 5-39 60-94 (110)
132 cd05749 Ig2_Tyro3_like Second 97.7 7E-05 1.5E-09 39.6 4.1 30 67-97 6-36 (81)
133 cd05745 Ig3_Peroxidasin Third 97.7 5E-05 1.1E-09 39.1 3.3 24 73-97 1-24 (74)
134 cd05758 Ig5_KIRREL3-like Fifth 97.7 0.00013 2.8E-09 39.6 5.0 37 60-97 2-39 (98)
135 cd05724 Ig2_Robo Second immuno 97.7 0.00013 2.8E-09 38.4 4.6 31 67-97 4-34 (86)
136 cd05755 Ig2_ICAM-1_like Second 97.7 0.00014 2.9E-09 40.1 4.7 29 69-97 11-41 (100)
137 cd05754 Ig3_Perlecan_like Thir 97.7 9.3E-05 2E-09 39.1 3.9 23 16-39 52-74 (85)
138 PHA02987 Ig domain OX-2-like p 97.7 0.00024 5.1E-09 43.1 5.9 51 5-57 73-124 (189)
139 cd05737 Ig_Myomesin_like_C C-t 97.7 9.1E-05 2E-09 39.8 3.7 29 68-97 10-38 (92)
140 PF00047 ig: Immunoglobulin do 97.6 4.8E-05 1E-09 37.9 2.4 18 18-36 47-64 (64)
141 cd04972 Ig_TrkABC_d4 Fourth do 97.6 0.00012 2.5E-09 39.2 4.0 29 68-97 9-37 (90)
142 cd05747 Ig5_Titin_like M5, fif 97.6 0.00015 3.2E-09 38.9 4.4 30 67-97 11-40 (92)
143 cd07700 IgV_CD8_beta Immunoglo 97.6 0.00013 2.9E-09 40.3 4.3 28 10-38 66-93 (107)
144 cd04975 Ig4_SCFR_like Fourth i 97.6 8.3E-05 1.8E-09 40.9 3.4 31 67-97 11-41 (101)
145 cd05740 Ig_CEACAM_D4 Fourth im 97.6 0.00021 4.6E-09 38.5 4.8 28 68-97 12-39 (91)
146 cd04982 IgV_TCR_gamma Immunogl 97.6 0.00014 3E-09 40.6 4.2 32 6-38 65-98 (116)
147 PHA02633 hypothetical protein; 97.6 0.00035 7.7E-09 34.9 5.0 36 16-55 18-53 (63)
148 cd05752 Ig1_FcgammaR_like Frst 97.6 4.5E-05 9.8E-10 40.0 1.9 21 16-38 47-67 (78)
149 cd05754 Ig3_Perlecan_like Thir 97.6 0.00032 6.9E-09 37.0 5.1 31 67-97 9-39 (85)
150 cd05739 Ig3_RPTP_IIa_LAR_like 97.6 0.00012 2.7E-09 37.3 3.3 23 74-97 1-23 (69)
151 cd05857 Ig2_FGFR Second immuno 97.6 0.00017 3.8E-09 37.9 4.0 28 69-97 4-31 (85)
152 PHA03271 envelope glycoprotein 97.6 0.0022 4.7E-08 43.4 9.8 81 11-97 202-285 (490)
153 PF08205 C2-set_2: CD80-like C 97.6 5.9E-05 1.3E-09 40.1 2.2 25 73-97 13-37 (89)
154 cd04968 Ig3_Contactin_like Thi 97.6 0.00022 4.9E-09 37.8 4.4 30 67-97 9-38 (88)
155 cd05727 Ig2_Contactin-2-like S 97.6 0.00015 3.3E-09 39.6 3.7 25 15-40 59-83 (96)
156 cd05733 Ig6_L1-CAM_like Sixth 97.5 0.00014 3E-09 37.8 3.4 24 16-40 39-66 (77)
157 cd05727 Ig2_Contactin-2-like S 97.5 0.0002 4.3E-09 39.1 4.0 31 67-97 11-41 (96)
158 cd05894 Ig_C5_MyBP-C C5 immuno 97.5 0.00016 3.5E-09 38.5 3.6 29 68-97 4-32 (86)
159 cd05728 Ig4_Contactin-2-like F 97.5 0.00021 4.4E-09 37.9 4.0 30 67-97 7-36 (85)
160 cd05722 Ig1_Neogenin First imm 97.5 0.00029 6.2E-09 38.0 4.6 29 68-97 8-36 (95)
161 cd05875 Ig6_hNeurofascin_like 97.5 0.00052 1.1E-08 35.7 5.2 25 16-40 39-66 (77)
162 cd05762 Ig8_MLCK Eighth immuno 97.5 0.00031 6.8E-09 38.3 4.5 30 67-97 8-37 (98)
163 cd05849 Ig1_Contactin-1 First 97.5 0.0003 6.6E-09 38.0 4.4 23 17-40 58-81 (93)
164 cd05758 Ig5_KIRREL3-like Fifth 97.5 0.00029 6.2E-09 38.2 4.3 24 16-39 64-87 (98)
165 cd05752 Ig1_FcgammaR_like Frst 97.5 0.00053 1.2E-08 35.9 5.1 30 67-97 8-38 (78)
166 smart00408 IGc2 Immunoglobulin 97.5 0.00017 3.8E-09 34.9 3.1 25 14-39 37-61 (63)
167 cd05891 Ig_M-protein_C C-termi 97.5 0.00023 5E-09 38.3 3.8 30 67-97 9-38 (92)
168 cd05896 Ig1_IL1RAPL-1_like Fir 97.4 0.00043 9.3E-09 38.3 4.5 23 16-39 70-92 (104)
169 PHA02826 IL-1 receptor-like pr 97.4 0.00064 1.4E-08 42.6 5.9 23 16-39 188-210 (227)
170 cd05730 Ig3_NCAM-1_like Third 97.4 0.00034 7.4E-09 37.6 4.1 29 68-97 12-40 (95)
171 cd05848 Ig1_Contactin-5 First 97.4 0.00026 5.7E-09 38.2 3.4 24 73-97 18-41 (94)
172 cd05739 Ig3_RPTP_IIa_LAR_like 97.4 0.0006 1.3E-08 34.8 4.6 21 16-39 38-58 (69)
173 cd05869 Ig5_NCAM-1 Fifth immun 97.4 0.0004 8.6E-09 37.6 4.0 27 70-97 13-39 (97)
174 cd05848 Ig1_Contactin-5 First 97.4 0.00037 8E-09 37.7 3.8 23 17-40 59-82 (94)
175 PF07679 I-set: Immunoglobulin 97.4 0.00031 6.7E-09 37.1 3.4 30 67-97 8-37 (90)
176 cd05845 Ig2_L1-CAM_like Second 97.4 0.00035 7.6E-09 38.1 3.6 31 67-97 11-41 (95)
177 cd05751 Ig1_LILRB1_like First 97.4 0.00043 9.3E-09 37.2 3.9 26 13-39 50-75 (91)
178 cd05850 Ig1_Contactin-2 First 97.3 0.00071 1.5E-08 36.5 4.6 23 17-40 59-82 (94)
179 PF13927 Ig_3: Immunoglobulin 97.3 0.00046 1E-08 34.8 3.5 26 12-38 50-75 (75)
180 cd04981 IgV_H Immunoglobulin ( 97.3 0.0015 3.2E-08 36.8 5.7 26 12-38 72-97 (117)
181 cd07693 Ig1_Robo First immunog 97.3 0.0018 3.9E-08 34.6 5.9 30 22-54 70-99 (100)
182 cd05845 Ig2_L1-CAM_like Second 97.3 0.00039 8.5E-09 37.9 3.2 23 16-39 58-81 (95)
183 cd05753 Ig2_FcgammaR_like Seco 97.3 0.00097 2.1E-08 35.2 4.6 31 67-97 7-37 (83)
184 cd07704 Ig2_Nectin-3-4_like Se 97.3 0.00083 1.8E-08 36.7 4.3 31 67-97 9-40 (97)
185 cd05874 Ig6_NrCAM Sixth immuno 97.2 0.0016 3.5E-08 33.8 5.2 22 17-39 40-65 (77)
186 cd05872 Ig_Sema4B_like Immunog 97.2 0.0015 3.2E-08 34.9 5.0 21 18-39 49-69 (85)
187 cd05856 Ig2_FGFRL1-like Second 97.2 0.00058 1.3E-08 35.4 3.5 28 69-97 4-31 (82)
188 PF13895 Ig_2: Immunoglobulin 97.2 0.00083 1.8E-08 34.4 4.0 35 61-97 2-36 (80)
189 PF13895 Ig_2: Immunoglobulin 97.2 0.0017 3.7E-08 33.2 5.2 34 18-54 47-80 (80)
190 cd05850 Ig1_Contactin-2 First 97.2 0.0013 2.8E-08 35.5 4.8 24 73-97 18-41 (94)
191 cd05898 Ig5_KIRREL3 Fifth immu 97.2 0.0018 3.9E-08 35.5 5.0 36 60-96 2-38 (98)
192 PHA03273 envelope glycoprotein 97.2 0.0072 1.6E-07 41.4 8.7 77 15-97 197-275 (486)
193 cd04967 Ig1_Contactin First Ig 97.2 0.00054 1.2E-08 36.6 2.9 22 17-39 59-81 (91)
194 cd05859 Ig4_PDGFR-alpha Fourth 97.1 0.00066 1.4E-08 37.3 3.0 29 68-97 12-40 (101)
195 cd05860 Ig4_SCFR Fourth immuno 97.1 0.0027 5.8E-08 35.0 5.2 35 16-54 65-99 (101)
196 cd05849 Ig1_Contactin-1 First 97.0 0.002 4.3E-08 34.8 4.5 23 74-97 19-41 (93)
197 cd05882 Ig1_Necl-1 First (N-te 97.0 0.0015 3.2E-08 35.5 3.8 29 67-96 5-33 (95)
198 cd05722 Ig1_Neogenin First imm 97.0 0.0018 4E-08 34.8 4.1 22 17-39 55-81 (95)
199 cd05865 Ig1_NCAM-1 First immun 97.0 0.0025 5.5E-08 34.6 4.6 28 68-96 9-37 (96)
200 PHA03270 envelope glycoprotein 97.0 0.014 3E-07 39.8 8.7 74 18-97 184-259 (466)
201 cd05898 Ig5_KIRREL3 Fifth immu 96.9 0.0083 1.8E-07 32.8 6.4 27 13-39 61-87 (98)
202 cd04979 Ig_Semaphorin_C Immuno 96.9 0.0025 5.4E-08 33.8 3.8 28 68-97 5-32 (89)
203 cd05729 Ig2_FGFR_like Second i 96.8 0.0043 9.3E-08 32.2 4.3 28 69-97 4-31 (85)
204 cd05885 Ig2_Necl-4 Second immu 96.7 0.0039 8.5E-08 32.9 4.0 36 17-53 44-79 (80)
205 cd05756 Ig1_IL1R_like First im 96.7 0.0021 4.6E-08 34.8 2.9 30 68-97 8-41 (94)
206 cd07701 Ig1_Necl-3 First (N-te 96.7 0.003 6.5E-08 34.2 3.4 29 67-96 5-33 (95)
207 cd05759 Ig2_KIRREL3-like Secon 96.7 0.0046 9.9E-08 32.3 4.0 35 17-53 47-81 (82)
208 cd05899 IgV_TCR_beta Immunoglo 96.7 0.0054 1.2E-07 33.9 4.4 29 67-97 6-34 (110)
209 cd00096 Ig Immunoglobulin doma 96.6 0.0039 8.5E-08 30.1 3.5 28 11-39 38-65 (74)
210 cd05773 Ig8_hNephrin_like Eigh 96.6 0.0041 8.9E-08 34.5 3.7 24 73-97 22-45 (109)
211 cd04973 Ig1_FGFR First immunog 96.6 0.0067 1.4E-07 31.5 4.2 28 68-97 3-30 (79)
212 cd05871 Ig_Semaphorin_classIII 96.5 0.0057 1.2E-07 32.9 3.8 27 69-97 6-32 (91)
213 cd04967 Ig1_Contactin First Ig 96.5 0.0044 9.4E-08 33.1 3.3 24 73-97 18-41 (91)
214 cd04980 IgV_L_kappa Immunoglob 96.5 0.011 2.4E-07 32.4 4.9 29 68-97 9-38 (106)
215 cd05721 IgV_CTLA-4 Immunoglobu 96.5 0.0093 2E-07 33.6 4.5 35 3-38 61-95 (115)
216 cd07689 Ig2_VCAM-1 Second immu 96.5 0.0076 1.7E-07 33.1 4.0 29 69-97 10-40 (99)
217 PF00047 ig: Immunoglobulin do 96.5 0.0048 1E-07 30.4 3.0 24 74-97 1-24 (64)
218 cd05751 Ig1_LILRB1_like First 96.4 0.015 3.2E-07 31.1 5.0 35 61-97 3-37 (91)
219 cd05711 Ig_FcalphaRI Immunoglo 96.4 0.013 2.9E-07 31.6 4.8 35 61-97 2-36 (94)
220 PF11465 Receptor_2B4: Natural 96.4 0.014 3E-07 32.4 4.7 41 12-55 67-107 (108)
221 PF13927 Ig_3: Immunoglobulin 96.3 0.0044 9.6E-08 31.1 2.6 23 73-95 14-36 (75)
222 smart00408 IGc2 Immunoglobulin 96.3 0.0092 2E-07 28.5 3.6 24 73-97 1-24 (63)
223 cd05749 Ig2_Tyro3_like Second 96.3 0.013 2.9E-07 30.8 4.2 22 16-40 49-70 (81)
224 cd05873 Ig_Sema4D_like Immunog 96.2 0.013 2.9E-07 31.3 3.9 29 67-97 4-32 (87)
225 cd05717 Ig1_Necl-1-3_like Firs 96.2 0.013 2.8E-07 31.4 4.0 29 67-96 5-33 (95)
226 cd05866 Ig1_NCAM-2 First immun 96.2 0.013 2.7E-07 31.7 3.8 28 67-96 8-35 (92)
227 cd04983 IgV_TCR_alpha_like Imm 96.1 0.017 3.6E-07 31.6 4.4 30 67-97 6-35 (109)
228 cd05766 IgC_MHC_II_beta Class 96.1 0.012 2.5E-07 31.9 3.6 26 72-97 12-38 (94)
229 cd07706 IgV_TCR_delta Immunogl 96.0 0.022 4.7E-07 31.7 4.5 31 67-97 7-37 (116)
230 cd04982 IgV_TCR_gamma Immunogl 96.0 0.018 4E-07 32.0 4.0 30 68-97 7-37 (116)
231 cd07694 Ig2_CD4 Second immunog 95.9 0.069 1.5E-06 28.7 5.8 39 13-55 48-86 (88)
232 cd05719 Ig2_PVR_like Second im 95.8 0.021 4.5E-07 31.1 3.7 22 76-97 17-38 (95)
233 cd04977 Ig1_NCAM-1_like First 95.8 0.023 5E-07 30.4 3.8 27 68-96 9-35 (92)
234 cd07703 Ig2_Nectin-2_like Seco 95.8 0.018 4E-07 31.3 3.3 21 77-97 18-38 (95)
235 smart00409 IG Immunoglobulin. 95.7 0.033 7.2E-07 28.1 4.3 28 69-97 4-31 (86)
236 smart00410 IG_like Immunoglobu 95.7 0.033 7.2E-07 28.1 4.3 28 69-97 4-31 (86)
237 cd00098 IgC Immunoglobulin Con 95.7 0.015 3.3E-07 30.9 2.8 26 72-97 11-37 (95)
238 cd05711 Ig_FcalphaRI Immunoglo 95.5 0.038 8.2E-07 29.8 4.1 23 15-38 54-76 (94)
239 cd07699 IgC_L Immunoglobulin C 95.5 0.02 4.3E-07 31.3 2.9 27 71-97 14-41 (100)
240 cd07698 IgC_MHC_I_alpha3 Class 95.0 0.054 1.2E-06 29.1 3.6 24 74-97 14-38 (93)
241 cd05768 IgC_CH4 CH4 domain (fo 94.9 0.049 1.1E-06 29.9 3.4 25 73-97 15-40 (102)
242 cd04981 IgV_H Immunoglobulin ( 94.8 0.096 2.1E-06 29.4 4.4 32 67-98 5-37 (117)
243 cd07696 IgC_CH3 CH3 domain (th 94.7 0.066 1.4E-06 29.1 3.5 28 70-97 10-39 (96)
244 cd05767 IgC_MHC_II_alpha Class 94.5 0.059 1.3E-06 29.2 3.0 25 73-97 14-39 (94)
245 cd05769 IgC_TCR_beta T cell re 94.3 0.058 1.3E-06 30.4 2.8 25 73-97 17-42 (115)
246 cd07694 Ig2_CD4 Second immunog 94.1 0.19 4.2E-06 27.0 4.4 27 69-95 9-36 (88)
247 cd05770 IgC_beta2m Class I maj 94.1 0.09 1.9E-06 28.5 3.1 26 72-97 13-39 (93)
248 KOG3515|consensus 94.0 0.081 1.8E-06 38.6 3.5 40 57-96 4-44 (741)
249 cd05757 Ig2_IL1R_like Second i 93.8 0.043 9.4E-07 29.5 1.5 29 69-97 5-37 (92)
250 PHA02914 Immunoglobulin-like d 93.8 0.24 5.1E-06 33.9 5.2 38 14-54 79-116 (500)
251 cd07697 IgC_TCR_gamma T cell r 93.8 0.12 2.6E-06 28.1 3.3 24 74-97 16-40 (96)
252 cd05881 Ig1_Necl-2 First (N-te 93.7 0.21 4.6E-06 27.1 4.1 29 67-96 5-33 (95)
253 cd05715 Ig_P0-like Immunoglobu 93.5 0.2 4.3E-06 27.9 4.0 31 67-97 6-39 (116)
254 cd05761 Ig2_Necl-1-4_like Seco 93.4 0.19 4.1E-06 26.2 3.6 21 20-41 49-69 (82)
255 cd04985 IgC_CH1 CH1 domain (fi 93.3 0.23 5E-06 26.9 3.9 25 73-97 15-40 (95)
256 cd05847 IgC_CH2_IgE CH2 domain 93.3 0.17 3.7E-06 27.4 3.4 24 74-97 14-38 (94)
257 PHA02987 Ig domain OX-2-like p 93.2 0.24 5.1E-06 30.4 4.1 30 68-97 24-53 (189)
258 cd05721 IgV_CTLA-4 Immunoglobu 93.2 0.3 6.6E-06 27.6 4.3 31 68-98 7-39 (115)
259 cd05860 Ig4_SCFR Fourth immuno 93.1 0.17 3.8E-06 27.9 3.2 30 67-97 11-41 (101)
260 cd07705 Ig2_Necl-1 Second immu 93.1 0.28 6.1E-06 25.7 4.0 34 18-52 48-81 (83)
261 cd05872 Ig_Sema4B_like Immunog 92.9 0.14 3E-06 27.3 2.6 28 68-97 5-32 (85)
262 PF08204 V-set_CD47: CD47 immu 92.8 0.2 4.2E-06 29.0 3.3 39 11-54 81-119 (130)
263 cd05880 Ig_EVA1 Immunoglobulin 92.7 0.29 6.3E-06 27.3 3.9 31 67-97 6-39 (115)
264 PF07686 V-set: Immunoglobulin 91.9 0.33 7.2E-06 26.1 3.5 30 68-97 10-39 (114)
265 PF07654 C1-set: Immunoglobuli 91.6 0.22 4.7E-06 26.0 2.4 26 72-97 6-32 (83)
266 PHA02982 hypothetical protein; 91.3 0.42 9.2E-06 29.9 3.6 32 7-39 91-122 (251)
267 cd00098 IgC Immunoglobulin Con 91.2 0.18 4E-06 26.6 1.9 21 18-39 64-84 (95)
268 cd05712 Ig_Siglec_N Immunoglob 91.0 0.53 1.1E-05 26.3 3.7 31 67-97 7-42 (119)
269 cd04986 IgC_CH2 CH2 domain (se 89.6 0.88 1.9E-05 25.0 3.7 27 71-97 16-44 (99)
270 cd05774 Ig_CEACAM_D1 First imm 88.4 1.5 3.2E-05 24.2 4.1 28 69-97 8-35 (105)
271 cd05883 Ig2_Necl-2 Second immu 88.0 2.2 4.8E-05 22.5 4.4 36 17-55 45-80 (82)
272 cd05890 Ig2_Nectin-1_like Seco 87.7 1.2 2.7E-05 24.4 3.3 21 77-97 23-43 (98)
273 PHA02914 Immunoglobulin-like d 85.5 4.7 0.0001 27.9 5.8 36 15-54 345-380 (500)
274 PHA03283 envelope glycoprotein 85.2 12 0.00025 26.8 8.0 77 16-96 134-233 (542)
275 PF01688 Herpes_gI: Alphaherpe 84.2 4.5 9.9E-05 24.3 4.9 26 13-39 121-146 (161)
276 cd05884 Ig2_Necl-3 Second immu 83.5 2.5 5.4E-05 22.1 3.3 22 18-40 48-69 (83)
277 cd07691 Ig_CD3_gamma_delta Imm 82.6 1.9 4.2E-05 22.1 2.5 22 16-38 33-54 (69)
278 cd05879 Ig_P0 Immunoglobulin ( 81.3 4.7 0.0001 22.6 4.0 30 67-96 6-38 (116)
279 PF07354 Sp38: Zona-pellucida- 80.9 1.7 3.8E-05 28.1 2.4 24 16-40 37-60 (271)
280 KOG1480|consensus 80.8 0.71 1.5E-05 34.2 0.7 24 15-39 182-205 (909)
281 PHA03290 envelope glycoprotein 78.2 8.7 0.00019 25.9 5.0 26 13-39 126-151 (357)
282 smart00407 IGc1 Immunoglobulin 76.6 5.1 0.00011 20.3 3.0 21 18-39 50-70 (75)
283 PHA02865 MHC-like TNF binding 71.2 7.1 0.00015 26.3 3.3 22 76-97 216-238 (338)
284 PHA03286 envelope glycoprotein 71.2 34 0.00074 24.2 9.4 78 16-96 127-225 (492)
285 PHA03292 envelope glycoprotein 70.5 14 0.00031 25.4 4.6 24 15-39 127-150 (413)
286 PHA03289 envelope glycoprotein 68.5 16 0.00034 24.6 4.4 24 15-39 121-144 (352)
287 PHA03042 CD47-like protein; Pr 68.5 27 0.00059 23.0 5.4 23 15-39 70-92 (286)
288 cd07692 Ig_CD3_epsilon Immunog 65.4 7.4 0.00016 19.7 2.0 22 72-97 5-26 (65)
289 PHA03052 Hypothetical protein; 64.4 17 0.00036 18.6 3.2 29 68-96 6-36 (69)
290 PF05790 C2-set: Immunoglobuli 64.1 20 0.00042 18.8 5.0 20 18-38 45-64 (80)
291 PF06214 SLAM: Signaling lymph 60.8 21 0.00046 20.2 3.4 21 16-37 103-123 (126)
292 PHA03282 envelope glycoprotein 60.5 21 0.00046 25.4 4.0 38 15-54 123-160 (540)
293 PF11327 DUF3129: Protein of u 57.0 32 0.0007 21.1 4.1 31 11-42 88-118 (184)
294 PHA03291 envelope glycoprotein 55.9 50 0.0011 22.7 5.1 25 14-39 127-151 (401)
295 PF10651 DUF2479: Domain of un 50.8 53 0.0011 19.6 4.7 46 9-55 77-124 (170)
296 PHA03282 envelope glycoprotein 50.4 56 0.0012 23.4 4.8 26 13-39 330-355 (540)
297 COG5475 Uncharacterized small 50.4 26 0.00057 17.2 2.4 21 16-39 18-38 (60)
298 KOG4597|consensus 49.3 24 0.00052 25.2 2.9 37 15-55 256-292 (560)
299 PF10572 UPF0556: Uncharacteri 48.9 58 0.0013 19.6 4.3 30 26-55 69-98 (158)
300 PF02480 Herpes_gE: Alphaherpe 43.5 53 0.0011 23.1 3.9 26 13-39 266-291 (439)
301 PHA03112 IL-18 binding protein 41.3 65 0.0014 19.0 3.5 26 71-96 35-61 (141)
302 PHA03240 envelope glycoprotein 38.6 15 0.00033 23.3 0.7 19 15-34 104-122 (258)
303 PF06328 Lep_receptor_Ig: Ig-l 38.3 66 0.0014 17.2 4.8 30 67-96 11-44 (89)
304 PHA03286 envelope glycoprotein 37.2 1.1E+02 0.0023 21.9 4.5 22 17-39 308-329 (492)
305 PF01082 Cu2_monooxygen: Coppe 33.1 76 0.0016 18.2 3.0 24 15-39 3-27 (132)
306 TIGR00864 PCC polycystin catio 32.7 3.8E+02 0.0081 24.2 8.2 70 23-96 1834-1903(2740)
307 PHA03189 UL14 tegument protein 31.3 1.7E+02 0.0037 19.9 5.5 17 22-39 139-155 (348)
308 PHA03283 envelope glycoprotein 30.3 64 0.0014 23.4 2.7 26 13-39 312-337 (542)
309 PF11781 RRN7: RNA polymerase 28.3 35 0.00077 14.9 0.9 10 25-35 20-29 (36)
310 cd00501 Peptidase_C15 Pyroglut 25.8 42 0.0009 20.5 1.2 15 22-36 130-144 (194)
311 PF07430 PP1: Phloem filament 24.1 1.9E+02 0.0042 18.1 4.5 35 3-38 153-188 (202)
312 KOG0200|consensus 23.4 87 0.0019 22.9 2.5 23 15-38 12-34 (609)
313 COG3536 Uncharacterized protei 22.9 97 0.0021 17.6 2.1 19 17-38 59-77 (120)
314 PRK13194 pyrrolidone-carboxyla 21.3 41 0.00088 21.1 0.5 15 22-36 130-144 (208)
315 PF12539 Csm1: Chromosome segr 21.2 1.6E+02 0.0034 16.0 4.8 32 18-55 14-46 (90)
No 1
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.51 E-value=2.9e-13 Score=78.37 Aligned_cols=75 Identities=21% Similarity=0.399 Sum_probs=57.3
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC-CeEEEE
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD-PQISVT 95 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~ 95 (98)
+|+|.+++.. |+|.|+|.+.+. .......+.|.|..+|.. .+.. ......+|..+.|+|.+.+.+|. +.+.|+
T Consensus 2 sL~i~~v~~~-D~G~Y~C~~~~~---~~~~~~~~~l~v~~~P~v-~~~~-~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~ 75 (139)
T cd05771 2 SLTLPGLTVH-DEGTYICSVSTP---PHQAQQIIQLSVSEPPRV-RLSL-EKLVSMIEEPQTLICHIAGYYPLDVQVEWT 75 (139)
T ss_pred eEEECCCCHH-HCEEEEEEEEcc---CcceeeEEEEEEecCCce-EEeC-CCceeecCCcEEEEEEECCCCCCCeEEEEE
Confidence 6999999999 999999999863 445666778888876654 3332 22344478889999999877776 589999
Q ss_pred ec
Q psy5866 96 LQ 97 (98)
Q Consensus 96 ~~ 97 (98)
++
T Consensus 76 ~~ 77 (139)
T cd05771 76 RE 77 (139)
T ss_pred EC
Confidence 75
No 2
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.27 E-value=1.1e-10 Score=76.20 Aligned_cols=79 Identities=18% Similarity=0.290 Sum_probs=56.4
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCee-eEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC---CeE
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDL-HSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD---PQI 92 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~-~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~---~~~ 92 (98)
.|.|.+++.+ |+|.|+|.+.+..++... .+..+.|.|..+..+|.+.......+..|+.+.|.|.+.+ .|. +.+
T Consensus 178 ~L~i~~v~~~-d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g-~P~~~~~~v 255 (326)
T PHA02785 178 IITIEDVRKN-DAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSL-RPPTTDADV 255 (326)
T ss_pred eEEEeecChh-hCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEEC-CCCCCCceE
Confidence 6999999999 999999999986432221 2334456665444556553335567788999999999974 454 589
Q ss_pred EEEec
Q psy5866 93 SVTLQ 97 (98)
Q Consensus 93 ~W~~~ 97 (98)
.|+++
T Consensus 256 ~W~kn 260 (326)
T PHA02785 256 FWISN 260 (326)
T ss_pred EEEEC
Confidence 99875
No 3
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.22 E-value=1.9e-10 Score=71.67 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=53.4
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCC----CCCC
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGG----SPDP 90 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~----~p~~ 90 (98)
..+|.|.+++.+ |+|.|+|.+.+. .......+.|.|..++ ....+.+|+.+.|+|.+.++ .|.|
T Consensus 97 ~~~L~I~~v~~~-DsG~Y~C~a~N~---~~~~~~~i~L~V~~~~--------~~~~~~~G~~v~L~C~~~~~~~~~~p~p 164 (227)
T PHA02826 97 SENLWIGNVINI-DEGIYICTISSG---NICEESTIRLTFDSGT--------INYQFNSGKDSKLHCYGTDGISSTFKDY 164 (227)
T ss_pred CCeEEECCCChH-HCEEEEEEEEEC---CcceEEEEEEEEecCC--------ccceEecCCCEEEEeeCCCCccccCCCc
Confidence 357999999999 999999999995 3344555667764211 22456789999999998654 4578
Q ss_pred eEEEEec
Q psy5866 91 QISVTLQ 97 (98)
Q Consensus 91 ~~~W~~~ 97 (98)
++.|+++
T Consensus 165 ~I~WyKn 171 (227)
T PHA02826 165 TLTWYKN 171 (227)
T ss_pred eEEEEEC
Confidence 9999986
No 4
>KOG3513|consensus
Probab=99.20 E-value=1.3e-10 Score=83.81 Aligned_cols=76 Identities=28% Similarity=0.480 Sum_probs=62.7
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISV 94 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W 94 (98)
...|.|.+++.+ |+|.|+|.+.|. .+.......+.|..+|.- +....+..+..|+++.+.|.+. |.|.|+++|
T Consensus 293 ~~vL~I~nv~~~-D~G~Y~C~AeN~---~G~~~~~~~v~v~a~P~w--~~~~~d~~~~~gs~v~~eC~a~-g~P~p~v~W 365 (1051)
T KOG3513|consen 293 GKVLKIPNVQYE-DAGEYECIAENS---RGSATHSGHVTVYAPPYW--LQKPQDTEADTGSNVTLECKAS-GKPNPTVKW 365 (1051)
T ss_pred ccEEEecccCcC-CCeEEEEEEecc---cccceeeEEEEEecCchh--hcccceeEecCCCCeEEEEEec-CCCCCceEE
Confidence 346999999999 999999999995 566777788888766653 3233667889999999999996 899999999
Q ss_pred Eec
Q psy5866 95 TLQ 97 (98)
Q Consensus 95 ~~~ 97 (98)
+++
T Consensus 366 lkN 368 (1051)
T KOG3513|consen 366 LKN 368 (1051)
T ss_pred eeC
Confidence 975
No 5
>KOG4194|consensus
Probab=99.11 E-value=5.8e-10 Score=77.01 Aligned_cols=83 Identities=24% Similarity=0.429 Sum_probs=63.3
Q ss_pred EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCC
Q psy5866 6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSG 85 (98)
Q Consensus 6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~ 85 (98)
|+.+.+..+ ..-|.||+++ |.|.|+|.+++. ++..+..+.|.|+..|.. .+. ..+..+..|+.+.|+|.+.
T Consensus 661 Rl~Vmpedd--~f~Itnvk~e-D~GiYtC~A~n~---AG~isanAtL~V~e~p~f-~~P-L~~~~V~~get~vlqC~a~- 731 (873)
T KOG4194|consen 661 RLHVMPEDD--VFFITNVKIE-DQGIYTCTAQNV---AGQISANATLTVLETPSF-SIP-LEDQLVVVGETLVLQCLAE- 731 (873)
T ss_pred eeeecCCCC--EEEEeccccc-ccceeEEeeecc---ccceeeceEEEEecCCcc-ccc-ccceEEEecceEEEEEecC-
Confidence 344444433 4779999999 999999999996 455566788999877654 332 3567899999999999986
Q ss_pred CCCC-CeEEEEec
Q psy5866 86 GSPD-PQISVTLQ 97 (98)
Q Consensus 86 ~~p~-~~~~W~~~ 97 (98)
+.|+ |.+.|+|+
T Consensus 732 ~~~a~pr~~W~k~ 744 (873)
T KOG4194|consen 732 GAPADPRLEWFKE 744 (873)
T ss_pred CCCCCccccccCC
Confidence 5665 99999986
No 6
>PHA03376 BARF1; Provisional
Probab=99.02 E-value=7.2e-09 Score=62.44 Aligned_cols=87 Identities=14% Similarity=0.332 Sum_probs=56.4
Q ss_pred CceeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeC-CCCceecCCCcEEEE
Q psy5866 2 DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP-GANPVATEGRAIELV 80 (98)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~-~~~~~~~~g~~~~l~ 80 (98)
++.-++++..+.++++|.|.+++++ |+|.|+|.++....+. ...-.|++. .|-...+.. ..+..+ .....+.
T Consensus 73 EyRGrtD~~~~~gnvsLvI~~l~lS-DdGtY~C~fQkge~~~---~k~ehLt~V-~~~~Lsv~a~~~dFp~--~~~~~i~ 145 (221)
T PHA03376 73 PFRGFFDIHRSANTFFLVVTAANIS-HDGNYLCRMKLGETEV---TKQEHLSVV-KPLTLSVHSERSQFPD--FSVLTVT 145 (221)
T ss_pred ccccEEEEEecCCeEEEEEEeeeec-CCceEEEEEEcCCCce---eeeeeeeee-ecceEEEEeccccCCC--CCeeEEE
Confidence 3455667766679999999999999 9999999998743222 122234442 222223321 011111 3446899
Q ss_pred EEcCCCCCCCeEEEEe
Q psy5866 81 CSTSGGSPDPQISVTL 96 (98)
Q Consensus 81 C~~~~~~p~~~~~W~~ 96 (98)
|. .+|.|.|.++|+.
T Consensus 146 C~-sggfP~P~~~Wle 160 (221)
T PHA03376 146 CT-VNAFPHPHVQWLM 160 (221)
T ss_pred Ee-cCCcCCchheecc
Confidence 99 5899999999974
No 7
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.97 E-value=5.2e-09 Score=57.29 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=40.7
Q ss_pred EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC
Q psy5866 6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61 (98)
Q Consensus 6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p 61 (98)
++..........|.|.++... |+|.|+|.+.|. .+.....+.|.|...|.+|
T Consensus 46 ~~~~~~~~~~s~L~I~~~~~~-D~G~Ytc~a~N~---~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 46 GIKIENTENSSKLTITEGQQE-HCGCYTLEVENK---LGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred cEEEEecCCeeEEEECCCChh-hCEEEEEEEEcC---CCceeEEEEEEEecCCCCC
Confidence 444444455678999999999 999999999996 4556667889998887765
No 8
>KOG3513|consensus
Probab=98.93 E-value=1.8e-08 Score=73.15 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=57.7
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCC--CCeEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSP--DPQIS 93 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~ 93 (98)
.+|.|++++.+ |+|.|+|.|.|. .+......+|.|..++.. +.......+..|+.+.|.|.+. ..+ .+.+.
T Consensus 479 GtL~I~n~t~~-DaG~YtC~A~N~---~G~a~~~~~L~Vkd~tri--~~~P~~~~v~~g~~v~l~Ce~s-hD~~ld~~f~ 551 (1051)
T KOG3513|consen 479 GTLEISNVTRS-DAGKYTCVAENK---LGKAESTGNLIVKDATRI--TLAPSNTDVKVGESVTLTCEAS-HDPSLDITFT 551 (1051)
T ss_pred CcEEecccCcc-cCcEEEEEEEcc---cCccceEEEEEEecCceE--EeccchhhhccCceEEEEeecc-cCCCcceEEE
Confidence 36999999999 999999999995 567777788888654432 2233556889999999999986 344 45788
Q ss_pred EEec
Q psy5866 94 VTLQ 97 (98)
Q Consensus 94 W~~~ 97 (98)
|.++
T Consensus 552 W~~n 555 (1051)
T KOG3513|consen 552 WKKN 555 (1051)
T ss_pred EEEC
Confidence 9764
No 9
>KOG4194|consensus
Probab=98.89 E-value=6.2e-09 Score=72.10 Aligned_cols=75 Identities=25% Similarity=0.426 Sum_probs=60.7
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL 96 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~ 96 (98)
.|++.||... |+|.|+|.+.|+-+ ...+..++|+|...|..... ..+.+...|+.+.|.|.+. |.|.|.+.|-+
T Consensus 575 ~L~L~nVt~t-d~grYQCVvtN~FG--Stysqk~KltV~~~PsFtkt--P~dltl~tg~mArl~CaAt-G~P~PeIawqk 648 (873)
T KOG4194|consen 575 ILHLDNVTFT-DEGRYQCVVTNHFG--STYSQKAKLTVNQAPSFTKT--PEDLTLRTGQMARLECAAT-GHPRPEIAWQK 648 (873)
T ss_pred eeeeeeeecc-cCceEEEEEecccC--cchhheeEEEeeccCccccC--cccceeecccceeeeeecc-CCCCcceeehh
Confidence 4899999999 99999999999733 44556678888766664333 3678999999999999996 89999999965
Q ss_pred c
Q psy5866 97 Q 97 (98)
Q Consensus 97 ~ 97 (98)
+
T Consensus 649 d 649 (873)
T KOG4194|consen 649 D 649 (873)
T ss_pred c
Confidence 3
No 10
>KOG4221|consensus
Probab=98.87 E-value=8.3e-09 Score=75.37 Aligned_cols=75 Identities=36% Similarity=0.521 Sum_probs=59.8
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT 95 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~ 95 (98)
.+|.|++++.. |+|.|+|+|.+. .......+.++|+.+|.. +.........++.++.+.|.+. |.|.|++.|+
T Consensus 291 ~slliS~a~~~-dSg~YtC~Atn~---~D~idasaev~V~a~P~~--~~~p~~l~A~e~~die~ec~~~-g~p~p~v~w~ 363 (1381)
T KOG4221|consen 291 SSLLISNATDD-DSGKYTCRATNT---NDSIDASAEVTVLAPPGF--TKAPTTLVAHESMDIEFECPVS-GKPIPTVRWY 363 (1381)
T ss_pred cceEEeccccc-cCceEEEEecCC---CcccccceEEEEEcCCCC--CCCCcceeeeeccceeEeCCCC-CCCcceEEEE
Confidence 36899999999 999999999984 455566678889877653 2223456777889999999986 7899999999
Q ss_pred ec
Q psy5866 96 LQ 97 (98)
Q Consensus 96 ~~ 97 (98)
++
T Consensus 364 kN 365 (1381)
T KOG4221|consen 364 KN 365 (1381)
T ss_pred ec
Confidence 86
No 11
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.78 E-value=4.9e-08 Score=52.08 Aligned_cols=41 Identities=32% Similarity=0.478 Sum_probs=33.3
Q ss_pred CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866 14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP 58 (98)
Q Consensus 14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~ 58 (98)
...+|.|.+++.. |+|.|+|.|.+. .+..+..+.|.|..+|
T Consensus 45 ~~~~L~I~~v~~~-D~G~YtC~A~n~---~g~~~~~~~L~V~~~P 85 (85)
T cd05854 45 TIGDLVIVNAQLS-HAGTYTCTAQTV---VDSASASATLVVRGPP 85 (85)
T ss_pred eEeEEEEccCChh-hCeEEEEEEecC---CCCEEEEEEEEEECCC
Confidence 3457999999999 999999999996 4566667788887554
No 12
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.77 E-value=4.3e-08 Score=52.60 Aligned_cols=42 Identities=31% Similarity=0.488 Sum_probs=35.0
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p 61 (98)
.+|.|.++... |+|.|+|.|.|. .+..+..+.|.|..+|.+|
T Consensus 47 s~L~I~~~~~~-D~G~YtC~A~N~---~G~~~~~~~L~V~~~P~~P 88 (88)
T cd05735 47 STLQILPTVRE-DSGFFSCHAINS---YGEDRGIIQLTVQEPPDPP 88 (88)
T ss_pred EEEEECCCCcc-cCEEEEEEEEcC---CCcceEEEEEEEeCCCCCC
Confidence 56999999999 999999999996 4556667888888777654
No 13
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.75 E-value=2e-08 Score=53.72 Aligned_cols=39 Identities=28% Similarity=0.497 Sum_probs=33.2
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP 58 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~ 58 (98)
.+|.|.+++.. |+|.|+|.|.+. ....+..+.|.|..||
T Consensus 47 ~~L~I~nv~~~-dsG~YtC~a~n~---~~~~~a~a~L~V~~pP 85 (85)
T cd05853 47 GDLMIRSIQLK-HAGKYVCMVQTS---VDKLSAAADLIVRGPP 85 (85)
T ss_pred CcEEEecCCHH-HCEEEEEEEEcc---cCceEEEEEEEEecCC
Confidence 36999999999 999999999995 5666777888888765
No 14
>KOG4221|consensus
Probab=98.75 E-value=1.4e-07 Score=69.29 Aligned_cols=85 Identities=27% Similarity=0.403 Sum_probs=60.9
Q ss_pred EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCC---C-EEeCCCCceecCCCcEEEEE
Q psy5866 6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP---P-KISPGANPVATEGRAIELVC 81 (98)
Q Consensus 6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~---p-~i~~~~~~~~~~g~~~~l~C 81 (98)
|+-+.+++ .|.|.++..+ |.|.|+|.+.+.+.. -.+..+.|+|..-+.. . ++.......+.+|+++.|.|
T Consensus 186 r~i~lpsG---~L~I~~~qp~-d~g~yrc~vt~g~~~--r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leC 259 (1381)
T KOG4221|consen 186 RVIVLPSG---ALEISGLQPS-DTGEYRCVVTGGASQ--RTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLEC 259 (1381)
T ss_pred cEEEcCCC---cEEecccccC-CCceEEEEEecCCcC--CccceeEEEecCCcccccceeeecCCCccccccCCcEEEEE
Confidence 44444433 4999999999 999999999985332 2355677777622211 1 23223456899999999999
Q ss_pred EcCCCCCCCeEEEEec
Q psy5866 82 STSGGSPDPQISVTLQ 97 (98)
Q Consensus 82 ~~~~~~p~~~~~W~~~ 97 (98)
.+. +.|.|.+.|+++
T Consensus 260 vvs-~~p~p~v~Wlrn 274 (1381)
T KOG4221|consen 260 VVS-GVPKPSVKWLRN 274 (1381)
T ss_pred Eec-CCCCCceEEeeC
Confidence 985 899999999975
No 15
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.72 E-value=1.2e-07 Score=62.05 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=51.7
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEe-CCCCceecCCCcEEEEEEcC----CCCCCCe
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS-PGANPVATEGRAIELVCSTS----GGSPDPQ 91 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~-~~~~~~~~~g~~~~l~C~~~----~~~p~~~ 91 (98)
.|.|.++..+ |+|.|+|.+.|. .......+.|.|..... +.+. ......+.+|..+.+.|... .+.|.+.
T Consensus 83 ~l~i~~~~~~-DsG~Y~C~a~N~---~g~~~~s~~L~V~~~~~-~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~ 157 (326)
T PHA02785 83 NMLILNPTQS-DSGIYICITKNE---TYCDMMSLNLTIVSVSE-SNIDLISYPQIVNERSTGEMVCPNINAFIASNVNAD 157 (326)
T ss_pred eEEEcccCcc-cCeEEEEEEECC---CcceEEEEEEEEEecCC-CccceeeccceecccCcEEEECCChhhcccCCCCce
Confidence 5889999999 999999999985 23344556777764322 1110 11234567899999999621 3568899
Q ss_pred EEEEe
Q psy5866 92 ISVTL 96 (98)
Q Consensus 92 ~~W~~ 96 (98)
+.|++
T Consensus 158 i~W~k 162 (326)
T PHA02785 158 IIWSG 162 (326)
T ss_pred EEEcc
Confidence 99975
No 16
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.68 E-value=1.4e-07 Score=48.73 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=32.6
Q ss_pred eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
.++......+...|.|.++... |+|.|+|.+.|. .+..+..+.|.
T Consensus 29 ~~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~ 73 (74)
T cd05748 29 GRVQIETTASSTSLVIKNAERS-DSGKYTLTLKNP---AGEKSATINVK 73 (74)
T ss_pred CeEEEEECCCeEEEEECCCCcC-cCEEEEEEEECC---CccEEEEEEEE
Confidence 3445544556678999999999 999999999995 34444444443
No 17
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.67 E-value=1e-07 Score=50.68 Aligned_cols=40 Identities=33% Similarity=0.522 Sum_probs=32.6
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP 58 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~ 58 (98)
..+|.|.+++.. |+|.|+|.+.+. ....+..+.|.|..+|
T Consensus 46 ~~~L~I~~v~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V~~pP 85 (85)
T cd04970 46 NGDLMIRNAQLK-HAGKYTCTAQTV---VDSLSASADLIVRGPP 85 (85)
T ss_pred cceEEEccCCHH-hCeeeEEEEecC---CCcEEEEEEEEEECCC
Confidence 457999999999 999999999985 4456667888887654
No 18
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.66 E-value=1.6e-07 Score=48.99 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=33.0
Q ss_pred eEEEEeC-CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 5 EIIDYRP-DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 5 ~~~~~~~-~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
.++.+.. ..+..+|.|.++..+ |+|.|+|.+.|. .+..+..+.|.|
T Consensus 29 ~r~~~~~~~~g~~~L~I~~~~~~-D~G~Y~C~A~N~---~G~~~~~a~L~V 75 (75)
T cd05892 29 DRISLYQDNSGRVTLLIKNVNKK-DAGWYTVSAVNE---AGVATCHARLDV 75 (75)
T ss_pred CeEEEEEcCCCcEEEEECCCChh-hCEEEEEEEEcC---cCeEEEEEEEeC
Confidence 3555433 345568999999999 999999999996 445555555543
No 19
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.66 E-value=2e-07 Score=51.11 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=31.9
Q ss_pred eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
+...++.+|+|++++.+ |+|.|.|.+.+-..+. .+..+.|.|
T Consensus 58 ~~~~~~~sL~I~nv~~s-D~GtY~C~v~~~p~g~--~~~~~~L~V 99 (100)
T cd05888 58 PNPIADGALILRNAVQA-DEGKYKCRVITFPAGN--FEAELVLTV 99 (100)
T ss_pred CCCCCceEEEEecCccc-cceEEEEEEEeCCCCC--eeeEEEEEe
Confidence 34567889999999999 9999999999853332 355566665
No 20
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.65 E-value=1.9e-07 Score=51.24 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=36.3
Q ss_pred eeEEEEe-CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 4 VEIIDYR-PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 4 ~~~~~~~-~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
+.|+.+. ...++.+|+|++++.+ |+|.|.|.+.+... +..+..+.|+|+
T Consensus 50 ~~Rv~f~~~~~~daSi~i~nl~~~-D~G~Y~C~v~t~P~--g~~~~~~~L~V~ 99 (99)
T cd05886 50 RERVTFKNPSFEDGTISLSRLELE-DEGVYICEFATFPT--GNRESQLNLTVY 99 (99)
T ss_pred cCcEEEcCCCCCcceEEEcCCccc-cCEEEEEEEEeCCC--CCeEEEEEEEEC
Confidence 3555543 4557789999999999 99999999998432 345666777763
No 21
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.62 E-value=2.2e-07 Score=50.70 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=31.0
Q ss_pred CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
..+.++|+|.+++.+ |+|.|+|.+.+. .......+.|+|
T Consensus 61 ~~~~~sL~I~~v~~~-D~G~Y~C~v~~~---~~~~~~~i~l~v 99 (100)
T cd05713 61 AEGSVALRIHNVRAS-DEGLYTCFFQSD---GFYEEATVELKV 99 (100)
T ss_pred cCCcEEEEEEcCChh-hCEEEEEEEecC---CcEEEEEEEEEE
Confidence 457889999999999 999999999974 344555566665
No 22
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.61 E-value=2.1e-07 Score=50.74 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=31.7
Q ss_pred eEEEEe-CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEE
Q psy5866 5 EIIDYR-PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTV 52 (98)
Q Consensus 5 ~~~~~~-~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l 52 (98)
.||... .++..++|+|++++.+ |+|.|+|++.. .+..+..+.+
T Consensus 50 ~Rf~~~~~~~~~~tL~I~~vq~~-D~G~Y~Cqv~t----~p~~~~~~~~ 93 (95)
T cd05881 50 SRFQLVNFSSNELRVSLSNVSLS-DEGRYFCQLYT----DPPQEAYTTI 93 (95)
T ss_pred cCEEEEeCCCCEEEEEECcCCcc-cCEEEEEEEEc----ccCeEEEEEE
Confidence 355433 3577999999999999 99999999987 3444444443
No 23
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.60 E-value=1.9e-07 Score=50.88 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=31.7
Q ss_pred EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
++.+....+..+|+|.+++.+ |+|.|+|.+.|.. +.....+.|+
T Consensus 54 r~~v~~~~~~~~L~I~~v~~~-D~G~Y~C~A~N~~---G~~~~~~~l~ 97 (98)
T cd05870 54 RIEVKGQHGESSLHIKDVKLS-DSGRYDCEAASRI---GGHQKSMYLD 97 (98)
T ss_pred eEEEeecCCeeEEEEeeCCcC-CCEEEEEEEeccC---CcceeEEEEe
Confidence 445444445678999999999 9999999999963 3344444544
No 24
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.59 E-value=2.3e-07 Score=50.27 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=33.0
Q ss_pred eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
.++.........+|+|.++..+ |+|.|+|.|.|..+ ......+.|.+
T Consensus 45 ~r~~~~~~g~~~~L~I~~v~~~-D~G~Y~C~A~N~~G--~~~~~~i~l~~ 91 (92)
T cd05866 45 QRVVVQKEGVRSRLTIYNANIE-DAGIYRCQATDAKG--QTQEATVVLEI 91 (92)
T ss_pred CCEEEEeCCCeeEEEEecCChH-HCEEEEEEEEcCCC--cEEEEEEEEEE
Confidence 3455555555678999999999 99999999999633 22244445543
No 25
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.59 E-value=2.8e-07 Score=50.32 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=34.6
Q ss_pred eEEEEe-CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 5 EIIDYR-PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 5 ~~~~~~-~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
.|+.+. ...++.+|+|.|++.+ |+|.|+|.+.+... +.......|+|
T Consensus 48 ~Rv~~~~~~~~d~sl~i~nv~~~-D~G~Y~C~v~tfP~--G~~~~~~~l~~ 95 (96)
T cd05887 48 GRVSFKNYSLLDATIMLENVGFS-DIGVYICKAVTFPL--GNTQSSTTVTV 95 (96)
T ss_pred CcEEEcCCCCCccEEEEeCCCcc-ccEEEEEEEEeCCC--CCeeEEEEEEE
Confidence 455553 4556789999999999 99999999988533 44445556655
No 26
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.58 E-value=2.7e-07 Score=52.03 Aligned_cols=30 Identities=30% Similarity=0.643 Sum_probs=26.7
Q ss_pred eCCCCeEEEEEccceeeccCeEEEEEEEECC
Q psy5866 10 RPDSGRYDLIISNASFERDNGKFECRLKAAG 40 (98)
Q Consensus 10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~ 40 (98)
+...++.+|.|.+++.+ |+|.|+|.+.+..
T Consensus 74 ~~~~~daSI~I~nv~~s-D~G~Y~C~v~n~p 103 (116)
T cd05879 74 NPSRKDGSIVIHNLDYT-DNGTFTCDVKNPP 103 (116)
T ss_pred CCCcCeeEEEEccCCcc-cCEEEEEEEEcCC
Confidence 45678899999999999 9999999999853
No 27
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.58 E-value=2e-07 Score=49.64 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=33.8
Q ss_pred EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
++.+....+..+|+|.++..+ |+|.|+|.+.+. ....+..+.|.|
T Consensus 46 ~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~n~---~g~~~~~~~l~V 90 (90)
T PF07679_consen 46 RYQIESDGGSSSLTIKNVTRE-DAGTYTCVASNS---SGEATASVNLTV 90 (90)
T ss_dssp SEEEEEETTEEEEEESSESGG-GSEEEEEEEEET---TEEEEEEEEEEE
T ss_pred eeeeecccceeEEccCCCChh-hCEEEEEEEEEC---CCEEEEEEEEEC
Confidence 344444447889999999999 999999999995 455555555554
No 28
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.57 E-value=3.5e-07 Score=47.69 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=32.4
Q ss_pred eEEEEeCCC-CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 5 EIIDYRPDS-GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 5 ~~~~~~~~~-~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
.++.+.... +...|.|.++..+ |+|.|+|.+.|. .+..+..+.|.|
T Consensus 29 ~~~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~~~a~L~V 75 (75)
T cd05893 29 DRVSMHQDNCGYICLLIQGATKE-DAGWYTVSAKNE---AGIVSCTARLDV 75 (75)
T ss_pred CeEEEEEcCCCEEEEEECCCCHH-HCEEEEEEEEcC---CCEEEEEEEEeC
Confidence 345554332 4447999999999 999999999996 445555555543
No 29
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.56 E-value=4.8e-07 Score=50.52 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=35.1
Q ss_pred EEEE---eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 6 IIDY---RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 6 ~~~~---~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
|+.+ ....+.++|+|++++.+ |+|.|.|.+... .......+.|.|.
T Consensus 59 R~~~~~~~~~~~~asL~I~~l~~s-D~G~Y~C~v~~~---~~~~~~~v~l~V~ 107 (110)
T cd05878 59 RVSLPNYPENRGDASLEISRLRSS-DSGVYRCEVMHG---IEDEQDTVPLEVT 107 (110)
T ss_pred eEEeccCCCCCCcEEEEECCCChh-hCEEEEEEEEeC---CCcceEEEEEEEE
Confidence 5554 24567899999999999 999999999874 3455666666664
No 30
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.55 E-value=6.8e-07 Score=48.48 Aligned_cols=38 Identities=32% Similarity=0.451 Sum_probs=29.0
Q ss_pred CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
++.+|+|.+++.+ |+|.|.|.+.... .+.....+.|.|
T Consensus 60 ~~~sL~I~~v~~~-D~G~Y~C~v~~~~--~g~~~~~~~l~V 97 (98)
T cd05718 60 EDATISISNLRLE-DEGNYICEFATFP--QGNRQKVTTLTV 97 (98)
T ss_pred CceEEEEccCCcc-cCEEEEEEEEeCC--CCcEEEEEEEEe
Confidence 6789999999999 9999999998642 234445555555
No 31
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.55 E-value=3.4e-07 Score=47.91 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=26.8
Q ss_pred EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
++......+...|+|.+++.+ |+|.|+|.+.|.
T Consensus 32 ~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~N~ 64 (78)
T cd05743 32 RVSITSEGGYGTLTIRDVKES-DQGAYTCEAINT 64 (78)
T ss_pred CEEEEECCCEEEEEECCCChH-HCEEEEEEEEec
Confidence 444444456678999999999 999999999986
No 32
>KOG4222|consensus
Probab=98.55 E-value=1.3e-07 Score=68.96 Aligned_cols=74 Identities=24% Similarity=0.372 Sum_probs=58.7
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL 96 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~ 96 (98)
.|.|.+++.. |+|.|.|.+.|..+.. .+....|+|+.+|.. +.......+.+|..+.+.|.+ .|.|.|+++|.+
T Consensus 188 ~LlIsnvrks-D~GtY~CVatNmvG~R--eS~~A~lsv~e~P~f--~~rp~~~~v~~g~~~~f~c~v-~GdP~P~Vrwkk 261 (1281)
T KOG4222|consen 188 NLLISNVRKS-DEGTYACVATNMVGER--ESIPARLSVQEKPWF--WKRPKDLAVLVGAAAEFDCRV-GGDPQPTVRWKK 261 (1281)
T ss_pred cEEEeccccC-CCceeeeeeccccccc--ccccceeeeccCCcc--ccccccceeeccccccccccc-CCCCCCceeeec
Confidence 4999999999 9999999999975433 333467888866653 322356789999999999998 589999999976
No 33
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.54 E-value=6.3e-07 Score=47.86 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=31.7
Q ss_pred EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
++......+...|.|.++... |+|.|+|.+.|. .+..+..+.|.
T Consensus 42 r~~~~~~~~~~~L~I~~~~~~-D~G~Y~c~a~N~---~G~~~~~~~l~ 85 (86)
T cd05894 42 RVRVESYKDLSSFVIEGAERE-DEGVYTITVTNP---VGEDHASLFVK 85 (86)
T ss_pred eEEEEEcCCeEEEEECCCccC-cCEEEEEEEEeC---CCcEEEEEEEE
Confidence 455444455678999999999 999999999996 33444444443
No 34
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.53 E-value=5.3e-07 Score=49.20 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=31.4
Q ss_pred EeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 9 YRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
+....+.++|+|++++.+ |+|.|+|.+.... .......+.|.|
T Consensus 54 ~~~~~~~~sL~I~~~~~~-DsG~Y~c~v~~~~--~~~~~~~f~L~v 96 (97)
T cd05775 54 VNFSQNDYSLQISNLKME-DAGSYRAEINTKN--GVTITKEFTLHI 96 (97)
T ss_pred EEecCCceeEEECCCchH-HCEEEEEEEEcCC--CCeEEEEEEEEe
Confidence 344566789999999999 9999999999853 233344455554
No 35
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.52 E-value=6e-07 Score=49.55 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=32.1
Q ss_pred CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
...++++|+|++++.+ |+|.|+|.+.+. .......+.|.|.
T Consensus 63 ~~~~~~sL~I~~v~~s-D~G~Y~C~v~~~---~~~~~~~v~L~V~ 103 (106)
T cd05714 63 ADPGDASLVITDLRLE-DSGRYRCEVIDG---IEDEQDTVELEVR 103 (106)
T ss_pred CCCCcceEEECCCCHH-HCEEEEEEEEcC---CCceEEEEEEEEE
Confidence 4567899999999999 999999999873 3444555666653
No 36
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.51 E-value=7.1e-07 Score=48.24 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=30.7
Q ss_pred EEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
+..........|+|.+++.+ |+|.|+|.+.|.. +..+..+.|.
T Consensus 53 ~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~N~~---G~~~~s~~l~ 95 (96)
T cd05732 53 IVVRGHARVSSLTLKDVQLT-DAGRYDCEASNRI---GGDQQSMYLE 95 (96)
T ss_pred EEEeCCccEEEEEECcCCcC-cCEEeEEEEEeCC---CCcEEEEEEe
Confidence 33333445678999999999 9999999999963 3344444444
No 37
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.50 E-value=1e-06 Score=46.83 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=30.4
Q ss_pred CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
...+|+|.+++.+ |+|.|.|.+.+... ....+..+.|+|+
T Consensus 44 ~~s~L~I~~~~~~-DsG~Y~C~a~n~~~-~~~~~~sv~i~V~ 83 (84)
T cd05861 44 LRSTLTFPHATVE-DSGTYECAAHESTQ-DQKAFKKVNITVH 83 (84)
T ss_pred EEEEEEECCCCcC-CCEEEEEEEEECcc-CcceeEEEEEEEe
Confidence 3568999999999 99999999987522 1244666777765
No 38
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.49 E-value=5.6e-07 Score=50.48 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=32.6
Q ss_pred EEEEeC---CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 6 IIDYRP---DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 6 ~~~~~~---~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
|+.+.. ..++++|+|++++.+ |+|.|+|.+.. +....+..+.|.|
T Consensus 61 R~sl~~~~~~~~~asL~I~nl~~s-DsG~Y~C~V~~---g~~~~~~~v~l~v 108 (112)
T cd05900 61 RVSLPNYPAIPSDATLEITELRSN-DSGTYRCEVMH---GIEDNYDTVEVQV 108 (112)
T ss_pred eEEecccCCCCCCcEEEEeecccc-cCEEEEEEEec---CCCCceeEEEEEE
Confidence 555543 568899999999999 99999999985 2334444444444
No 39
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.48 E-value=9.8e-07 Score=48.19 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=32.4
Q ss_pred eEEEEeC-CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 5 EIIDYRP-DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 5 ~~~~~~~-~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
.|+.+.. ...+.+|+|.|++.+ |+|.|+|.+.+. +..+....+.|.
T Consensus 48 ~Rv~f~~~~~~d~sI~i~nvt~~-D~G~Y~C~~~t~----P~g~~~~~i~~~ 94 (96)
T cd05889 48 GRVYFLNSTREDMSLSFNNATEE-DVGLYCCSLVTY----PQGSWEKVIEVV 94 (96)
T ss_pred CeEEEecCCCCccEEEEcCCCcc-cCEEEEEEEEeC----CCCCeEEEEEEE
Confidence 4555542 235788999999999 999999999984 333444455543
No 40
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.47 E-value=6.7e-07 Score=48.71 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=23.4
Q ss_pred CCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866 12 DSGRYDLIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~ 38 (98)
..+.++|+|+++..+ |+|.|+|.+..
T Consensus 58 ~~~~~~L~I~nV~~~-D~G~YtC~~~t 83 (95)
T cd05882 58 TPTELIISISNVQLS-DEGEYTCSIFT 83 (95)
T ss_pred CCceEEEEECCCCcc-cCEEEEEEEEe
Confidence 345789999999999 99999999987
No 41
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.46 E-value=8.9e-07 Score=48.16 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=26.3
Q ss_pred EEEE-eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 6 IIDY-RPDSGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 6 ~~~~-~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
|+.+ ....+.++|+|.+++.+ |+|.|+|.+.+.
T Consensus 51 r~~~~~~~~~~~sL~I~~v~~~-DsG~Y~C~~~t~ 84 (95)
T cd07701 51 RIELVRASWHELSISISDVSLS-DEGQYTCSLFTM 84 (95)
T ss_pred CEEEEECCCCcEEEEECcCCcc-cCEEEEEEeEee
Confidence 4443 33456789999999999 999999999984
No 42
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.45 E-value=1.1e-06 Score=49.16 Aligned_cols=47 Identities=13% Similarity=0.296 Sum_probs=35.8
Q ss_pred eEEEEe---CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 5 EIIDYR---PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 5 ~~~~~~---~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
-|+.+. ...++.+|+|.+++.+ |+|.|.|.+... ....+..+.|.|.
T Consensus 58 gRvsl~~~~~~~~~asL~i~nv~~~-D~G~Y~C~v~~g---~~~~~~~v~L~V~ 107 (110)
T cd05902 58 GRVSLPGYPKNRYNASLVLSRLRYS-DSGTYRCEVVLG---INDEQDTVPLEVT 107 (110)
T ss_pred cEEEeecCCCCCceEEEEECCCCHH-HCEEEEEEEEEC---CcccEEEEEEEEE
Confidence 455553 3457899999999999 999999999972 4566666777664
No 43
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.45 E-value=1.1e-06 Score=44.85 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=28.4
Q ss_pred CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
....|.|.++..+ |+|.|+|.+.|. .+..+..+.+.|+
T Consensus 29 ~~~~L~i~~v~~~-D~G~YtC~a~N~---~g~~~~~~~~~l~ 66 (67)
T cd05863 29 SQHSLQIKDVTEA-SAGTYTLVLWNS---AAGLEKRISLELI 66 (67)
T ss_pred CcCEEEECCCCHH-HCEEEEEEEEEC---CccEEEEEEEEEE
Confidence 3457999999999 999999999985 3444444555543
No 44
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.44 E-value=8.5e-07 Score=48.01 Aligned_cols=27 Identities=30% Similarity=0.635 Sum_probs=23.8
Q ss_pred CCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 12 DSGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
..+.++|+|.+++.+ |+|.|+|.+.+.
T Consensus 58 ~~~~~~L~I~~v~~~-DsG~Y~C~~~~~ 84 (95)
T cd05717 58 SANELSISISNVSLS-DEGRYTCSLYTM 84 (95)
T ss_pred CCCeeEEEEccCCcc-cCEEEEEEEecC
Confidence 445789999999999 999999999874
No 45
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.43 E-value=1.3e-06 Score=45.40 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=28.7
Q ss_pred CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
.+..+|.|.+++.. |+|.|+|.+.|. .+..+..+.|.
T Consensus 38 ~~~~~L~I~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~ 74 (75)
T cd05744 38 CGRICLLIQNANKE-DAGWYTVSAVNE---AGVVSCNARLD 74 (75)
T ss_pred CCeEEEEECCCCcc-cCEEEEEEEEcC---CCcEEEEEEEe
Confidence 45668999999999 999999999996 34444445554
No 46
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.43 E-value=1.5e-06 Score=45.00 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=27.6
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
.|.|.+++.+ |+|.|+|.+.|. .+..+..+.|.|
T Consensus 41 ~L~I~~~~~~-D~G~Y~C~A~N~---~G~~~~~~~l~V 74 (75)
T cd05763 41 VFFIVDVKIE-DTGVYSCTAQNT---AGSISANATLTV 74 (75)
T ss_pred EEEEeeCCcc-cCEEEEEEEEcC---CCEEEeeEEEEE
Confidence 6999999999 999999999985 345555666665
No 47
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.41 E-value=1.3e-06 Score=49.12 Aligned_cols=30 Identities=30% Similarity=0.659 Sum_probs=25.9
Q ss_pred eCCCCeEEEEEccceeeccCeEEEEEEEECC
Q psy5866 10 RPDSGRYDLIISNASFERDNGKFECRLKAAG 40 (98)
Q Consensus 10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~ 40 (98)
+...++++|+|.+++.+ |+|.|.|.+.+..
T Consensus 74 ~~~~~~~sL~I~~v~~~-D~G~Y~C~v~~~~ 103 (116)
T cd05715 74 NPSRKDASIVIHNLQFT-DNGTYTCDVKNPP 103 (116)
T ss_pred CCcCCeeEEEEeeCCcc-cCEEEEEEEEeCC
Confidence 34566799999999999 9999999999853
No 48
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.41 E-value=1.9e-06 Score=46.93 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=32.3
Q ss_pred eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
....+..+|+|++++.+ |+|.|.|.+.... ....+..+.|+|
T Consensus 55 ~~~~~~~sL~I~nv~~~-D~G~Y~C~~~~~p--~g~~~~~~~L~v 96 (97)
T cd05846 55 SLGLNSTSITIWNVTLE-DEGCYKCIFNTFP--DGSKSGTMCLTV 96 (97)
T ss_pred CCCCCccEEEEeCCcee-eeEEEEEEEEeCC--CCCeeeEEEEEE
Confidence 34456789999999999 9999999998753 244555566766
No 49
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.40 E-value=1.4e-06 Score=46.97 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.6
Q ss_pred CeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 14 GRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 14 ~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
+..+|.|.+++.+ |+|.|+|.+.|.
T Consensus 56 ~~~~L~I~~v~~~-D~G~Y~C~a~N~ 80 (92)
T cd05737 56 KYASLTIKGVSSE-DSGKYGIVVKNK 80 (92)
T ss_pred CEEEEEEccCChh-hCEEEEEEEEEC
Confidence 3568999999999 999999999995
No 50
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.40 E-value=7.2e-07 Score=47.89 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=28.3
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
..|.|.+++.+ |+|.|+|.+.|. .+.....+.|.|
T Consensus 55 ~~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~~~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFE-DAGEYTCLAGNS---IGISHHSAWLTV 89 (90)
T ss_pred eEEEEccCCHH-HCEEEEEEEEeC---CCcccceEEEEE
Confidence 57999999999 999999999996 344555566665
No 51
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.39 E-value=1.3e-06 Score=45.27 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=26.2
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
+|.|.+++.+ |+|.|+|.+.|. .+.....+.|.
T Consensus 40 ~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~~~~~l~ 72 (73)
T cd05852 40 SLEILNITKL-DEGSYTCFAENN---RGKANSTGVLS 72 (73)
T ss_pred EEEECcCChh-HCEEEEEEEECC---CCceeEEEEEE
Confidence 6999999999 999999999996 34444455554
No 52
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.38 E-value=2e-06 Score=47.38 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=32.5
Q ss_pred EEEEeC-CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 6 IIDYRP-DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 6 ~~~~~~-~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
|+.+.. ..+..+|+|.+++.+ |+|.|.|.+.+. .......+.|.|
T Consensus 57 R~~~~~~~~~~~sL~I~~v~~~-DsG~Y~C~v~~~---~~~~~~~~~l~v 102 (106)
T cd05877 57 RVFLRRAHDLDASLVITDLRLE-DYGRYRCEVIDG---LEDESVVVALRL 102 (106)
T ss_pred cEEecCCCCCcEEEEEccCChH-HCEEEEEEEEec---ccceEEEEEEEE
Confidence 444432 255789999999999 999999999762 444555566655
No 53
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.38 E-value=2e-06 Score=46.77 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=27.2
Q ss_pred CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
....|.|.+++.+ |+|.|+|.+.|. .+..+..+.|.
T Consensus 61 ~~~~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~~~~~l~ 96 (97)
T cd05869 61 RVSSLTLKYIQYT-DAGEYLCTASNT---IGQDSQSMYLE 96 (97)
T ss_pred cEEEEEEecCccC-cCEEEEEEEecC---CCCeeEEEEEE
Confidence 3457999999999 999999999996 34444444444
No 54
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.38 E-value=2.5e-06 Score=48.13 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=31.8
Q ss_pred CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
...++.+|+|.+++.+ |+|.|.|.+... .......+.|.|.
T Consensus 74 ~~~g~asL~i~~v~~s-D~G~Y~C~V~~g---~~~~~~~v~L~V~ 114 (117)
T cd05901 74 EDQGDASLTIVKLRAS-DAGVYRCEVMHG---IEDTQDTVSLDVS 114 (117)
T ss_pred CcCCceEEEEcccccc-cCEEEEEEEEEC---CcccEEEEEEEEE
Confidence 3457899999999999 999999999873 4455555666653
No 55
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.37 E-value=1.6e-06 Score=48.72 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=26.1
Q ss_pred eCCCCeEEEEEccceeeccCeEEEEEEEECC
Q psy5866 10 RPDSGRYDLIISNASFERDNGKFECRLKAAG 40 (98)
Q Consensus 10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~ 40 (98)
+...++.+|+|.+++++ |+|.|.|.+.+..
T Consensus 73 ~~~~~~~sL~I~~v~~~-D~G~Y~C~v~~~~ 102 (115)
T cd05880 73 NIMRRDASILIWQLQPT-DNGTYTCQVKNPP 102 (115)
T ss_pred CCcCCceEEEEeeCChh-hCEEEEEEEEeCC
Confidence 34567889999999999 9999999999853
No 56
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.37 E-value=1.9e-06 Score=46.98 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=28.9
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
..+|.|.+++.+ |+|.|+|.|.|..+ ...+..+.|.|
T Consensus 59 ~~~L~I~~v~~~-D~G~YtC~A~N~~~--g~~~~s~~l~v 95 (96)
T cd05865 59 SSTLTIYNANID-DAGIYKCVVSNEDE--GESEATVNVKI 95 (96)
T ss_pred ceEEEEeccChh-hCEEEEEEEEcCCC--CcEEEEEEEEE
Confidence 467999999999 99999999999632 44455556655
No 57
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.36 E-value=8.1e-07 Score=45.28 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=26.0
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
.+|+|.+++.+ |+|.|+|.+.|. .+..+..+.|.
T Consensus 35 ~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~ 68 (69)
T cd05725 35 KSLKIRNVTAG-DEGSYTCEAENM---VGKIEASASLT 68 (69)
T ss_pred CEEEECcCChh-HCEEEEEEEEcC---CCcEEEEEEEE
Confidence 46999999999 999999999985 33344444444
No 58
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.36 E-value=1.4e-06 Score=44.82 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=27.4
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
..+|.|.++..+ |+|.|+|.+.|. .+..+..+.+.|+
T Consensus 34 ~~~L~I~~v~~~-D~G~YtC~a~N~---~g~~~~~~~~~~~ 70 (71)
T cd04976 34 GHSLTIKDVTEE-DAGNYTVVLTNK---QAKLEKRLTFTLV 70 (71)
T ss_pred CCEEEECcCCHH-HCEEEEEEEEcC---CccEEEEEEEEEE
Confidence 357999999999 999999999985 3333444445443
No 59
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.35 E-value=6.8e-07 Score=48.02 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=28.3
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
...|.|.+++.+ |+|.|+|.|.|. .+.....+.|.|
T Consensus 54 ~~~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~~sa~L~V 89 (90)
T cd04974 54 SEVLYLRNVSFD-DAGEYTCLAGNS---IGPSHHSAWLTV 89 (90)
T ss_pred cceEEEeccccc-cCcEEEEEeecc---cCcccCCEEEEe
Confidence 357999999999 999999999996 344455566665
No 60
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.34 E-value=3.5e-06 Score=45.15 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=29.2
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT 56 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~ 56 (98)
+|+|.+++.+ |+|.|+|.+.|. .+.....+.|.|..
T Consensus 48 ~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V~~ 83 (90)
T cd05726 48 DLTITNVQRS-DVGYYICQTLNV---AGSILTKAYLEVTD 83 (90)
T ss_pred eEEEeeCChh-hCEEEEEEEEcC---CCceEEEEEEEEee
Confidence 6999999999 999999999996 34455567777753
No 61
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.33 E-value=1.6e-06 Score=44.53 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=27.9
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
..+|.|.+++.+ |+|.|+|.+.|. .+..+..+.|.|
T Consensus 35 ~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V 70 (71)
T cd05876 35 NKTLQLDNVLES-DDGEYVCTAENS---EGSARHHYTVTV 70 (71)
T ss_pred CCEEEEcccCHH-hCEEEEEEEEcC---CCeEEEEEEEEE
Confidence 457999999999 999999999996 344455555554
No 62
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.33 E-value=1.5e-06 Score=45.46 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=27.0
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
.+|.|.+++.+ |+|.|+|.+.|. .+.....+.|.
T Consensus 47 ~~L~I~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~ 80 (81)
T cd05765 47 GQLVIYNAQPQ-DAGLYTCTARNS---GGLLRANFPLS 80 (81)
T ss_pred cEEEEccCCcc-cCEEEEEEEecC---CceEEEEEEEe
Confidence 57999999999 999999999995 34455555554
No 63
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.33 E-value=1.8e-06 Score=45.66 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=27.9
Q ss_pred CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
...+|+|.+++.+ |+|.|+|.+.+. ....+.+..+.|
T Consensus 47 ~~s~L~I~~v~~~-DsG~Y~C~a~n~---~~~~~~s~~v~v 83 (84)
T cd05742 47 LSSTLTIPNATLK-DSGTYTCAASSG---TMDQKESTKVNI 83 (84)
T ss_pred EEEEEEECCCChh-hCEEEEEEEccC---CCceEEEEEEEE
Confidence 3567999999999 999999999985 334444455544
No 64
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.32 E-value=4.2e-06 Score=45.15 Aligned_cols=27 Identities=41% Similarity=0.588 Sum_probs=23.7
Q ss_pred CCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 12 DSGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
.....+|+|.+++.+ |+|.|+|.+.|.
T Consensus 53 ~~~~~~L~I~~v~~~-D~G~Y~C~A~N~ 79 (92)
T cd04977 53 DDVRSTLTIYNANIE-DAGIYKCVATDA 79 (92)
T ss_pred CCCEEEEEEecCCcc-cCEEEEEEEEcC
Confidence 345568999999999 999999999995
No 65
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.32 E-value=4.3e-07 Score=49.40 Aligned_cols=27 Identities=33% Similarity=0.710 Sum_probs=24.6
Q ss_pred CCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 12 DSGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
..+.++|+|++++.+ |+|.|.|.+.+.
T Consensus 61 ~~g~~~L~I~~l~~s-DsgtY~C~v~~~ 87 (94)
T cd07690 61 DQGSFPLIIKNLKIE-DSDTYICEVEDK 87 (94)
T ss_pred CCCeEEEEECCCCHH-HCEEEEEEECCc
Confidence 567899999999999 999999999874
No 66
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.30 E-value=3.5e-06 Score=45.32 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=26.2
Q ss_pred EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
++.+.......+|.|.++..+ |+|.|+|.+.|.
T Consensus 49 ~~~~~~~~~~~~L~i~~~~~~-D~G~Y~C~a~N~ 81 (92)
T cd05747 49 RHQITSTEYKSTFEISKVQMS-DEGNYTVVVENS 81 (92)
T ss_pred cEEEEEcCCeeEEEECCCCcc-cCEeEEEEEEcC
Confidence 344444444578999999999 999999999985
No 67
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.30 E-value=1.3e-06 Score=45.13 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=26.5
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
.+|+|.+++.+ |+|.|+|.+.|. .+..+..+.|.
T Consensus 40 ~~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~~~~~L~ 73 (74)
T cd05745 40 GTLRISRVALH-DQGQYECQAVNI---VGSQRTVAQLT 73 (74)
T ss_pred CeEEEeeCCHH-hCEEEEEEEEeC---CCceeEEEEEe
Confidence 37999999999 999999999995 34444445554
No 68
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.29 E-value=6.4e-06 Score=45.23 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=33.4
Q ss_pred EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
.+..+...++++|+|.+++.+ |+|.|.|.+... ..........|.|
T Consensus 69 ~~~~~~~~~~~sL~i~~l~~~-DsG~Y~C~v~~~--~~~~~~~~~~L~V 114 (114)
T PF07686_consen 69 TFSGNGSQNNFSLTIKNLQPS-DSGTYFCQVSTS--NEQSFGNGTKLTV 114 (114)
T ss_dssp EEEEETTTTEEEEEESSESGG-GEEEEEEEEEES--SEEEEEEEEEEEE
T ss_pred eeeecccCCeEEEEECCCCcC-cCEEEEEEEEEC--CCCEECCcEEEEC
Confidence 344556678999999999999 999999999984 1244444444443
No 69
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.29 E-value=3.6e-06 Score=45.43 Aligned_cols=36 Identities=11% Similarity=0.233 Sum_probs=29.5
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
..|+|.+++.. |+|.|+|.+.|. .+.....+.|.|+
T Consensus 58 ~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~L~V~ 93 (95)
T cd05730 58 SEMTILDVDKL-DEAEYTCIAENK---AGEQEAEIHLKVF 93 (95)
T ss_pred CEEEECCCChh-hCEEEEEEEEcC---CCeEEEEEEEEEE
Confidence 36999999999 999999999996 4455666777775
No 70
>KOG4222|consensus
Probab=98.29 E-value=1.6e-06 Score=63.59 Aligned_cols=75 Identities=23% Similarity=0.347 Sum_probs=60.5
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT 95 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~ 95 (98)
.+|+|.++... |+|.|.|.+.+. .+..+....++|+++|..- ..+ .+..+..|..++|.|.+. |.|.|.+.|.
T Consensus 278 qtl~i~r~tp~-deg~y~C~a~n~---vG~l~asa~ltV~apP~f~-kkp-~dq~v~lg~~vt~pc~~~-gnP~PavfW~ 350 (1281)
T KOG4222|consen 278 QTLRIDRVTPT-DEGTYVCPAENL---VGGLEASATLTVQAPPSFG-KKP-RDQKVALGGTVTFPCETL-GNPPPAVFWL 350 (1281)
T ss_pred ccccccccCCC-cccceeeecccc---ccccccccceEEecCcccc-ccc-CccccccCceEEeeeecC-CCCCcceEEe
Confidence 57999999999 999999999986 5666777889998777642 222 345677888999999986 7899999997
Q ss_pred ec
Q psy5866 96 LQ 97 (98)
Q Consensus 96 ~~ 97 (98)
+.
T Consensus 351 ke 352 (1281)
T KOG4222|consen 351 KE 352 (1281)
T ss_pred cc
Confidence 63
No 71
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.28 E-value=5.7e-06 Score=42.88 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=23.5
Q ss_pred CCeEEEEEccceeeccCeEEEEEEEECC
Q psy5866 13 SGRYDLIISNASFERDNGKFECRLKAAG 40 (98)
Q Consensus 13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~ 40 (98)
....+|.|.++... |+|.|+|.+.+..
T Consensus 41 ~~~~~L~I~~~~~~-DsG~Y~C~a~N~~ 67 (76)
T cd05895 41 KKSSELQISKASLA-DNGEYKCMVSSKL 67 (76)
T ss_pred CcEEEEEECcCCcc-cCEEEEEEEEeCC
Confidence 34567999999999 9999999999963
No 72
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.28 E-value=2.7e-06 Score=45.36 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=28.2
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
...|+|.+++.+ |+|.|.|.+.|. .+.....+.|.|
T Consensus 52 ~~~L~i~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V 87 (88)
T cd04968 52 GAVLKIPNIQFE-DEGTYECEAENI---KGKDTHQGRIYV 87 (88)
T ss_pred CCEEEECCCCcc-cCEEEEEEEEEC---CCcEEEEEEEEE
Confidence 357999999999 999999999996 344455566655
No 73
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.28 E-value=4.3e-06 Score=44.75 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.7
Q ss_pred EEEEEccceeeccCeEEEEEEEEC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
++|+|.+++.+ |+|.|+|++...
T Consensus 57 ~sL~I~~l~~~-DsG~Y~c~v~~~ 79 (92)
T cd05741 57 GSLLIQNLTKE-DSGTYTLQIIST 79 (92)
T ss_pred ceEEEccCCch-hcEEEEEEEEcC
Confidence 78999999999 999999999985
No 74
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.28 E-value=3.2e-06 Score=44.11 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=26.7
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
..|.|.+++.+ |+|.|+|.+.|..+ ....+..+.|.|
T Consensus 38 ~~L~I~~~~~~-D~G~Y~C~a~N~~G-~~~s~~~~~l~v 74 (77)
T cd05760 38 RTLTLRSAGPD-DSGLYYCCAHNAFG-SVCSSQNFTLSI 74 (77)
T ss_pred CEEEEeeCCcc-cCEEEEEEEEeCCC-eEeeCceEEEEE
Confidence 47999999999 99999999999532 122233455554
No 75
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.27 E-value=1.8e-06 Score=44.50 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=26.3
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
+|.|.+++.+ |+|.|+|.+.|. .+..+..+.|.
T Consensus 40 ~L~i~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~ 72 (73)
T cd04969 40 SLEILNVTKS-DEGKYTCFAENF---FGKANSTGSLS 72 (73)
T ss_pred eEEEccCChh-HCEEEEEEEECC---CCceEEEEEEE
Confidence 6999999999 999999999995 34455555554
No 76
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.27 E-value=2.8e-06 Score=43.28 Aligned_cols=36 Identities=31% Similarity=0.448 Sum_probs=27.2
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
...|.|.+++.+ |+|.|+|.+.|. .+..+..+.|.|
T Consensus 35 ~~~L~i~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V 70 (71)
T cd05731 35 NKTLKIDNVSEE-DDGEYRCTASNS---LGSARHTISVTV 70 (71)
T ss_pred CCEEEECCCCHH-HCEEEEEEEEeC---CceEEEEEEEEE
Confidence 347999999999 999999999995 344444455543
No 77
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.26 E-value=3.3e-06 Score=46.46 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=29.6
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
...|.|.++..+ |+|.|+|.|.|. .+..+..+.|.|.
T Consensus 64 ~~~L~i~~v~~~-D~G~Ytc~A~N~---~G~~~~t~~L~V~ 100 (101)
T cd04975 64 VSELKLVRLKES-EAGTYTFLASNS---DASKSLTFELYVN 100 (101)
T ss_pred EEEEEEeecCHh-hCeeEEEEEECC---CccEEEEEEEEEE
Confidence 356999999999 999999999996 4555666666664
No 78
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.26 E-value=3.4e-06 Score=43.40 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.4
Q ss_pred EEEEEccceeeccCeEEEEEEEEC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
..|.|.++..+ |+|.|+|.+.|.
T Consensus 34 ~~L~I~~v~~~-D~G~YtC~a~N~ 56 (70)
T cd05864 34 VHLTIYEVTEK-DAGNYTVVLTNP 56 (70)
T ss_pred CEEEECcCCHH-HCEEEEEEEEEC
Confidence 46999999999 999999999996
No 79
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.26 E-value=4.9e-06 Score=43.92 Aligned_cols=36 Identities=17% Similarity=0.435 Sum_probs=28.1
Q ss_pred CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
+.++|.|.++... |+|.|+|.+.|. .+.....+.|.
T Consensus 49 ~~~~l~i~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~ 84 (85)
T cd05857 49 QHWSLIMESVVPS-DKGNYTCVVENE---YGSINHTYHLD 84 (85)
T ss_pred CceEEEEccCCcc-cCEEEEEEEEeC---CCEEEEEEEEE
Confidence 4567999999999 999999999995 34455555554
No 80
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.25 E-value=3.3e-06 Score=43.88 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=27.2
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
.+|.|.+++.+ |+|.|+|.+.|. .+.....+.|.|
T Consensus 41 ~~L~I~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V 75 (76)
T cd05867 41 GALILTDVQPS-DTAVYQCEARNR---HGNLLANAHVHV 75 (76)
T ss_pred CEEEECCCChh-hCEEEEEEEECC---CCeEEEEEEEEE
Confidence 36999999999 999999999985 344444555555
No 81
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.24 E-value=3.6e-06 Score=45.40 Aligned_cols=37 Identities=24% Similarity=0.485 Sum_probs=27.8
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
..+|+|.+++.+ |+|.|.|.+.|..+ ...+..+.|.|
T Consensus 54 ~~~L~I~~v~~~-D~G~Y~C~a~N~~G--~~~S~~~~L~V 90 (91)
T cd05740 54 NRTLTFNNVTRS-DTGHYQCEASNEVS--NMTSDPYILNV 90 (91)
T ss_pred CCEEEECcCChh-hCEEEEEEEEcCCC--CEEeeeEEEEe
Confidence 347999999999 99999999999632 23444555554
No 82
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.24 E-value=3.7e-06 Score=45.02 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=27.1
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
..|.|.+++.+ |+|.|+|.+.|. .+.....+.|.|
T Consensus 53 ~~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~~~~~l~V 87 (88)
T cd05851 53 AVLKIFNIQPE-DEGTYECEAENI---KGKDKHQARVYV 87 (88)
T ss_pred CEEEECcCChh-hCEEEEEEEEcC---CCceEEEEEEEE
Confidence 36999999999 999999999996 344444555554
No 83
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.23 E-value=3.6e-06 Score=46.30 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=29.3
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
.+|+|.++..+ |+|.|+|.|.|. .+..+..+.|.|.
T Consensus 65 s~L~I~~v~~~-D~G~Ytc~A~N~---~g~~~~t~~l~V~ 100 (101)
T cd05859 65 SKLKLIRAKEE-DSGLYTALAQNE---DAVKSYTFALQIQ 100 (101)
T ss_pred cEEEEeeCCHH-HCEEEEEEEEcC---CceEEEEEEEEEE
Confidence 47999999999 999999999996 4556666666664
No 84
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.23 E-value=5.4e-06 Score=44.71 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.8
Q ss_pred eEEEEEccceeeccCeEEEEEEEEC
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
..+|.|.+++.+ |+|.|+|.+.|.
T Consensus 57 ~~~L~I~~~~~~-D~G~Y~C~a~N~ 80 (92)
T cd05891 57 YASLTIKGVTSE-DSGKYSINVKNK 80 (92)
T ss_pred EEEEEECCCChh-hCEEEEEEEEeC
Confidence 357999999999 999999999985
No 85
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.21 E-value=4.1e-06 Score=43.26 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=27.8
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
..|.|.+++.. |+|.|+|.+.|. .+.....+.|.|
T Consensus 41 ~~L~i~~v~~~-D~G~Y~C~A~N~---~G~~~~~~~l~V 75 (76)
T cd04978 41 GTLILSNVQPN-DTAVYQCNASNV---HGYLLANAFVHV 75 (76)
T ss_pred CEEEECCCChh-hCEEEEEEEEcc---CCeEEEeEEEEE
Confidence 46999999999 999999999985 344555566665
No 86
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.21 E-value=3.8e-06 Score=43.82 Aligned_cols=26 Identities=27% Similarity=0.602 Sum_probs=23.0
Q ss_pred CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 13 SGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
.+..+|.|.+++.+ |+|.|+|.+.+.
T Consensus 45 ~~~~~L~i~~v~~~-D~G~Y~C~a~N~ 70 (82)
T cd05856 45 KKKWTLSLKNLKPE-DSGKYTCHVSNR 70 (82)
T ss_pred CceEEEEEccCChh-hCEEEEEEEEcC
Confidence 34578999999999 999999999985
No 87
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.20 E-value=6e-06 Score=42.10 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.2
Q ss_pred EEEEEccceeeccCeEEEEEEEEC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
..|.|.+++.. |+|.|+|.+.|.
T Consensus 36 ~~L~I~~~~~~-D~G~Y~C~a~N~ 58 (69)
T cd05746 36 GYLAIRDVGVA-DQGRYECVARNT 58 (69)
T ss_pred CEEEECcCChh-hCEEEEEEEECC
Confidence 36999999999 999999999985
No 88
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.20 E-value=9.3e-06 Score=44.79 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=25.4
Q ss_pred eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 10 RPDSGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
+...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus 64 ~~~~~~~~L~I~~~~~~-DsG~Y~C~~~~~ 92 (109)
T cd04983 64 DKSRKSSSLHISAAQLS-DSAVYFCALSES 92 (109)
T ss_pred cccCCEEEEEECCCCHH-HCEEEEEEEecC
Confidence 34568999999999999 999999999864
No 89
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.20 E-value=1e-05 Score=43.35 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=27.8
Q ss_pred CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
.....|+|.++... |.|.|+|.+.|. .+.....+.|+
T Consensus 53 ~~~~~L~I~~v~~~-D~g~Y~C~A~N~---~G~~~~~~~L~ 89 (90)
T cd04972 53 VDIYNLQLSNITSE-TQTTVTCTAENP---VGQANVSVQVT 89 (90)
T ss_pred CCEEEEEEecCCcc-cCEEEEEEEECC---CCceeEEEEEe
Confidence 33568999999999 999999999986 33444445554
No 90
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.18 E-value=1e-05 Score=41.44 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=25.5
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
.|.|.+++.+ |+|.|+|.+.|. .+.....+.|.
T Consensus 38 ~l~i~~v~~~-D~G~Y~C~A~N~---~G~~~~~~~L~ 70 (71)
T cd05723 38 NLQVLGLVKS-DEGFYQCIAEND---VGNVQASAQLI 70 (71)
T ss_pred CEEEEcCCcc-cCEEEEEEEEcC---CCEEEEEEEEE
Confidence 4888899999 999999999995 34455555554
No 91
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.18 E-value=5.4e-06 Score=42.95 Aligned_cols=35 Identities=29% Similarity=0.546 Sum_probs=27.6
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
..|.|.++... |.|.|+|.+.+. .+.....+.|.|
T Consensus 39 ~~l~I~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V 73 (76)
T cd05736 39 SELHISNVRYE-DTGAYTCIAKNE---AGVDEDISSLFV 73 (76)
T ss_pred CEEEECcCCcc-cCEEEEEEEEcC---CCCcceEEEEEE
Confidence 46999999999 999999999985 344455556655
No 92
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.17 E-value=5.7e-06 Score=43.05 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=27.9
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
.|.|.+++.. |+|.|+|.+.|. .+.....+.|.|
T Consensus 42 ~l~i~~v~~~-D~G~Y~C~A~N~---~G~~~~~~~l~v 75 (76)
T cd05868 42 TIIFSKVQER-SSAVYQCNASNE---YGYLLANAFVNV 75 (76)
T ss_pred EEEECCCCHh-hCEEEEEEEEcC---CCEEEEEEEEEe
Confidence 6899999999 999999999996 455556666665
No 93
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.17 E-value=1.1e-05 Score=45.57 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=27.6
Q ss_pred EEEE--eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866 6 IIDY--RPDSGRYDLIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 6 ~~~~--~~~~~~~~l~I~~v~~~~d~G~y~C~~~~ 38 (98)
|+.+ +...++++|+|.+++.+ |+|.|.|++..
T Consensus 68 R~~~~~~~~~~~~sL~I~~l~~~-Dsg~Y~C~~~~ 101 (119)
T cd05712 68 RFRLLGDLGKKNCSLLISDAQPE-DSGKYFFRVEL 101 (119)
T ss_pred cEEEecCCCCCEEEEEEccCChh-hCeEEEEEEEc
Confidence 5555 56788899999999999 99999999876
No 94
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.15 E-value=9.2e-06 Score=42.54 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.5
Q ss_pred EEEEccceeeccCeEEEEEEEEC
Q psy5866 17 DLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
+|.|.+++.+ |+|.|+|.+.+.
T Consensus 46 ~L~I~~~~~~-DsG~Y~C~a~n~ 67 (79)
T cd04973 46 EVQIKDAVPR-DSGLYACVTSSP 67 (79)
T ss_pred EEEECCCChh-hCEEEEEEEeCC
Confidence 6999999999 999999999874
No 95
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.15 E-value=8.8e-06 Score=43.41 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=28.7
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
...|.|.+++.. |+|.|+|.+.+. .........|.|+
T Consensus 49 ~s~L~I~~~~~~-DsG~Y~C~a~n~---~~~~~~~t~~~V~ 85 (86)
T cd05862 49 SSTLTIENVTLS-DLGRYTCTASSG---QMIAKNSTIVIVH 85 (86)
T ss_pred eeEEEEecCCcc-cCEEEEEEEeec---ceEecccEEEEEe
Confidence 457999999999 999999999984 4455555566554
No 96
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.14 E-value=1.2e-05 Score=42.43 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=22.1
Q ss_pred eEEEEEccceeeccCeEEEEEEEEC
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
...|.|.+++.. |+|.|+|.|.|.
T Consensus 45 ~~~L~I~~~~~~-D~G~YtC~A~N~ 68 (81)
T cd04971 45 HGCLQFDNPTHV-NNGNYTLVASNE 68 (81)
T ss_pred EEEEEECCCCcc-cCeEEEEEEEeC
Confidence 457999999999 999999999996
No 97
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.12 E-value=6.8e-06 Score=42.55 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.3
Q ss_pred EEEEEccceeeccCeEEEEEEEEC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
.+|.|.+++.+ |+|.|+|.+.+.
T Consensus 36 ~~L~I~~v~~~-D~G~YtC~a~~~ 58 (72)
T cd07702 36 YSLVIKDVTEE-DAGIYTILLGIK 58 (72)
T ss_pred CEEEECcCCHH-HCEEEEEEEEcc
Confidence 37999999999 999999999985
No 98
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.10 E-value=1.8e-05 Score=40.64 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=23.1
Q ss_pred CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 13 SGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
.....|.|.+++.+ |+|.|+|.+.|.
T Consensus 40 ~~~~~L~I~~~~~~-D~G~Y~C~a~N~ 65 (75)
T cd05750 40 KKNSELQINKAKLA-DSGEYTCVVENI 65 (75)
T ss_pred CceEEEEEccCCcc-cCeEEEEEEEEc
Confidence 34568999999999 999999999996
No 99
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.10 E-value=1.9e-05 Score=41.65 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=22.5
Q ss_pred CeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 14 GRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 14 ~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
....|.|.++... |+|.|+|.|.|.
T Consensus 42 ~~~~L~i~~~~~~-D~G~YtC~A~N~ 66 (79)
T cd05855 42 YHGCLQLDNPTHL-NNGIYTLVAKNE 66 (79)
T ss_pred eEEEEEECCCCcc-cCEEEEEEEEcC
Confidence 3457999999999 999999999996
No 100
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.09 E-value=2.7e-05 Score=43.30 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=30.4
Q ss_pred eEEEEEccce-eeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866 15 RYDLIISNAS-FERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP 58 (98)
Q Consensus 15 ~~~l~I~~v~-~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~ 58 (98)
...|+|.+++ .+ |.|.|+|.|.|. .+..+..+.|.|..+|
T Consensus 68 ~s~L~I~~v~~~~-D~G~Y~C~A~N~---~G~~~~~i~L~~~~~p 108 (109)
T cd05773 68 TSILTIINVSAAL-DYALFTCTAHNS---LGEDSLDIQLVSTSRP 108 (109)
T ss_pred eeEEEECcCCccC-CCEEEEEEEEeC---CccCcEEEEEEecCCC
Confidence 3579999997 58 999999999996 3445666777776444
No 101
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.09 E-value=1e-05 Score=44.04 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=29.1
Q ss_pred CEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 61 PKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 61 p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
|.|....+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus 3 p~i~~~~~~~~~~G~~v~l~C~~~-G~P~p~i~W~k~ 38 (98)
T cd05870 3 PHIIQLKNETTVENGAATLSCKAE-GEPIPEITWKRA 38 (98)
T ss_pred CEEEeeccEEEcCCCcEEEEEecc-cCCCCeEEEEEC
Confidence 334333567899999999999986 899999999984
No 102
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.06 E-value=9e-06 Score=41.85 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=25.4
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
+|.|.++..+ |+|.|+|.+.|. .+..+..+.|.
T Consensus 41 ~L~i~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~ 73 (74)
T cd05764 41 TLDILITTVK-DTGSFTCIASNA---AGEATATVELH 73 (74)
T ss_pred EEEEEECChh-hCEEEEEEEECC---CCeEEEEEEEE
Confidence 6899999999 999999999996 33444444444
No 103
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.06 E-value=1e-05 Score=44.21 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=24.3
Q ss_pred CCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 12 DSGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
..+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus 63 ~~~~~sL~I~~v~~~-D~G~Y~C~v~~~ 89 (105)
T cd00099 63 SKSSFTLTISSLQPE-DSAVYYCAVSLS 89 (105)
T ss_pred cCCEEEEEECCCCHH-HCEEEEEEEecC
Confidence 347899999999999 999999999874
No 104
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.05 E-value=1e-05 Score=43.88 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=25.8
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
..|.|.++..+ |+|.|+|.+.+. .......+.|.
T Consensus 60 ~~L~I~~~~~~-DsG~Y~C~~~N~---~g~~~~~~~L~ 93 (94)
T cd05756 60 DLLWFLPAALE-DSGLYTCVVRNS---TYCMKVSISLT 93 (94)
T ss_pred CeEEEccCCcc-cCeEEEEEEcCC---CccEEEEEEEE
Confidence 46999999999 999999999985 33333344444
No 105
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.03 E-value=7.7e-06 Score=42.41 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=24.7
Q ss_pred eEEEEe--CCCCeEEEEEccceeeccCeEEEEEE
Q psy5866 5 EIIDYR--PDSGRYDLIISNASFERDNGKFECRL 36 (98)
Q Consensus 5 ~~~~~~--~~~~~~~l~I~~v~~~~d~G~y~C~~ 36 (98)
.|+.+. ...+.++|+|.+++.+ |+|.|.|.+
T Consensus 49 ~R~~~~~~~~~~~~~L~i~~~~~~-D~G~Y~C~v 81 (81)
T smart00406 49 GRVTISKDTSKNDVSLTISNLRVE-DTGTYYCAV 81 (81)
T ss_pred CcEEEEecCcCCEEEEEEcCCCHH-HCEEEEEcC
Confidence 344443 3478899999999999 999999964
No 106
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.03 E-value=1.4e-05 Score=41.71 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.8
Q ss_pred EEEEEccceeeccCeEEEEEEEECC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAG 40 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~ 40 (98)
.+|.|.++..+ |+|.|+|.+.|..
T Consensus 44 ~~L~I~~v~~~-D~G~Y~C~a~N~~ 67 (79)
T cd05734 44 GSLLIKHVLEE-DSGYYLCKVSNDV 67 (79)
T ss_pred CeEEECcCCcc-cCEEEEEEEEeCC
Confidence 57999999999 9999999999963
No 107
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.00 E-value=0.00014 Score=49.68 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=60.9
Q ss_pred eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC
Q psy5866 10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD 89 (98)
Q Consensus 10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~ 89 (98)
....+.+.|.|..++.. ++|.|+=++.+.+.+.......+.+.++.+|.. .+ ....+.+|+.+..+|.+..-+|.
T Consensus 283 ~a~p~~~pL~I~sltaA-TeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsV-sV---~p~PVL~Ge~YkAtC~vA~YYPp 357 (566)
T PHA03269 283 RKTTSDFSLHILSLDAS-TEGTYIWRVIHTANKNVINEHHITVMSYKRPNI-TV---IGDPVLLGNPYAAYCKVNKYYPP 357 (566)
T ss_pred CCCCCccceEEeecccc-cCceEEEEEecCCCCceeeeeEEEEEEecCCCc-cc---cCCccccCCCceEEEEeeeecCC
Confidence 34456788999999999 999998777654333455556667777766532 22 33578899999999999877774
Q ss_pred --CeEEEEec
Q psy5866 90 --PQISVTLQ 97 (98)
Q Consensus 90 --~~~~W~~~ 97 (98)
..++|+++
T Consensus 358 ~SvrlrWf~n 367 (566)
T PHA03269 358 HSVIVKWTSN 367 (566)
T ss_pred CceEEEEEeC
Confidence 46899976
No 108
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.99 E-value=2.9e-05 Score=42.01 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=22.1
Q ss_pred eEEEEEccceeeccCeEEEEEEEECC
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAG 40 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~ 40 (98)
...|.|.++..+ |+|.|+|.+.+..
T Consensus 51 ~~~L~I~~v~~~-DsG~YtC~~~n~~ 75 (92)
T cd05757 51 GSKLLIQNVTEE-DAGNYTCKLTFTH 75 (92)
T ss_pred CCEEEEeeCChh-hCEEEEEEEEecC
Confidence 347999999999 9999999999863
No 109
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.96 E-value=2.6e-05 Score=41.69 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=26.5
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
.+..+.+|+.+.|.|.+. |.|.|.++|+++
T Consensus 9 ~~~~~~~G~~v~l~C~~~-G~P~P~v~W~k~ 38 (88)
T cd05851 9 KDTYALKGQNVTLECFAL-GNPVPVIRWRKI 38 (88)
T ss_pred ccEEEeCCCcEEEEEEec-ccCCCEEEEEEC
Confidence 456788999999999985 899999999985
No 110
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=97.95 E-value=2e-05 Score=40.75 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=25.8
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
.|.|.+++.+ |+|.|+|.+.|..+ ...+..+.|.|
T Consensus 39 ~L~i~~~~~~-D~G~Y~C~a~N~~G--~~~s~~a~l~v 73 (74)
T cd05738 39 ALQIENSEES-DQGKYECVATNSAG--TRYSAPANLYV 73 (74)
T ss_pred EEEECCCChh-hCEEEEEEEECCCC--ceEcccEEEEE
Confidence 5999999999 99999999998632 22344445544
No 111
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.94 E-value=1.8e-05 Score=41.93 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=25.8
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
.|.|.++..+ |+|.|+|.+.|. .+.....+.|.
T Consensus 52 ~L~i~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~ 84 (85)
T cd05728 52 DLRITKLSLS-DSGMYQCVAENK---HGTIYASAELA 84 (85)
T ss_pred EEEEeeCCHH-HCEEEEEEEECC---CCeEEEEEEEE
Confidence 6999999999 999999999985 34444445544
No 112
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.91 E-value=0.00011 Score=38.39 Aligned_cols=37 Identities=22% Similarity=0.474 Sum_probs=27.3
Q ss_pred CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
...+.|.|.++..+ |+|.|.|.+.+. .+.....+.|.
T Consensus 48 ~~~~~l~i~~~~~~-d~g~Y~C~~~n~---~g~~~~~~~l~ 84 (85)
T cd05729 48 KKKWTLILESVVPS-DSGKYTCIVENK---YGSINHTYKVD 84 (85)
T ss_pred CcEEEEEEeECCcc-cCEEEEEEEEEC---CceEEEEEEEe
Confidence 44567999999999 999999999985 33334444443
No 113
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=97.91 E-value=4.4e-05 Score=41.08 Aligned_cols=30 Identities=23% Similarity=0.526 Sum_probs=26.2
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
.+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus 9 ~~~~v~~G~~~~l~C~~~-g~P~p~i~W~k~ 38 (100)
T cd07693 9 SDLIVSKGDPATLNCKAE-GRPTPTIQWLKN 38 (100)
T ss_pred ceeEEcCCCeEEEEeeCC-cCCCCEEEEEEC
Confidence 456888999999999986 789999999985
No 114
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=97.89 E-value=2.6e-05 Score=42.05 Aligned_cols=36 Identities=36% Similarity=0.511 Sum_probs=28.3
Q ss_pred CEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 61 PKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 61 p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
|.|....+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus 3 P~i~~~~~~~~~~g~~v~l~C~~~-g~p~p~v~W~~~ 38 (96)
T cd05732 3 PKITYLENQTAVELEQITLTCEAE-GDPIPEITWRRA 38 (96)
T ss_pred ccceecCceeEecCCcEEEEEEEe-EcCCCcEEEEEC
Confidence 334323456788999999999986 789999999875
No 115
>smart00409 IG Immunoglobulin.
Probab=97.89 E-value=9.6e-05 Score=37.90 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=23.4
Q ss_pred CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 11 PDSGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
......+|.|.+++.. |+|.|.|.+.+.
T Consensus 46 ~~~~~~~l~i~~~~~~-d~G~Y~C~v~~~ 73 (86)
T smart00409 46 RSGSNSTLTISNVTPE-DSGTYTCAATNS 73 (86)
T ss_pred EcCCeeEEEEEeeccc-cCeEEEEEEEcC
Confidence 3333678999999999 999999999964
No 116
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.89 E-value=9.6e-05 Score=37.90 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=23.4
Q ss_pred CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 11 PDSGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
......+|.|.+++.. |+|.|.|.+.+.
T Consensus 46 ~~~~~~~l~i~~~~~~-d~G~Y~C~v~~~ 73 (86)
T smart00410 46 RSGSNSTLTISNVTPE-DSGTYTCAATNS 73 (86)
T ss_pred EcCCeeEEEEEeeccc-cCeEEEEEEEcC
Confidence 3333678999999999 999999999964
No 117
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.89 E-value=4.2e-05 Score=41.25 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=26.8
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
.+|.|+++..+ |+|.|.|.+.+... ......+.|.|+
T Consensus 53 ~~L~I~~~~~~-DsG~Y~C~a~~~~~--~~~~~~~~l~v~ 89 (91)
T cd05871 53 RGLLLRSLQRS-DAGVYTCTAVEHSF--SQTLAKYTLHVI 89 (91)
T ss_pred CeEEEeeCChh-HCEEEEEEEEccCC--eEEEEEEEEEEe
Confidence 35999999999 99999999986422 222235666664
No 118
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=97.88 E-value=3.4e-05 Score=40.65 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.6
Q ss_pred EEEEEccceeeccCeEEEEEEEECC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAG 40 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~ 40 (98)
.+|.|.+++.+ |+|.|+|.+.|..
T Consensus 51 ~~L~I~~~~~~-D~G~Y~C~a~N~~ 74 (86)
T cd05724 51 GNLLIAEARKS-DEGTYKCVATNMV 74 (86)
T ss_pred CEEEEeECCcc-cCEEEEEEEEecc
Confidence 36999999999 9999999999963
No 119
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.88 E-value=2.6e-05 Score=42.38 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=28.2
Q ss_pred eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866 5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~ 38 (98)
.|+......+.++|+|.+++.+ |+|.|.|.+.+
T Consensus 52 ~rf~~~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~ 84 (98)
T cd04984 52 DRFSGSKSGNTASLTISGAQTE-DEADYYCQVWD 84 (98)
T ss_pred CCEEEEccCCEEEEEECCCChh-hCEEEEEEEcc
Confidence 4666666668899999999999 99999998875
No 120
>KOG3515|consensus
Probab=97.87 E-value=2.4e-05 Score=55.87 Aligned_cols=80 Identities=26% Similarity=0.357 Sum_probs=54.7
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCC-ceecCCCcEEEEEEcCCCCCCCeEEEE
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGAN-PVATEGRAIELVCSTSGGSPDPQISVT 95 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~-~~~~~g~~~~l~C~~~~~~p~~~~~W~ 95 (98)
.+.+...+.+ +.|.|+|.+.++++.....-....+.|..+.....+..... ....+|+.+.|.|.+.+|+|.+.+.|+
T Consensus 164 ~l~~~v~Rka-~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~ 242 (741)
T KOG3515|consen 164 LLKQTVSRKA-DNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWY 242 (741)
T ss_pred ceeeEEEEec-CCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhc
Confidence 4667777788 99999999998644333333333444433333333332222 567889999999999999999999998
Q ss_pred ec
Q psy5866 96 LQ 97 (98)
Q Consensus 96 ~~ 97 (98)
++
T Consensus 243 ~~ 244 (741)
T KOG3515|consen 243 KD 244 (741)
T ss_pred cc
Confidence 65
No 121
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.84 E-value=4.3e-05 Score=42.80 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=34.0
Q ss_pred EECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866 54 VLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD-PQISVTLQ 97 (98)
Q Consensus 54 v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~ 97 (98)
|.++|..|.+.. .......|+.++|.|.+.+++|. .+++|+++
T Consensus 2 v~~~P~~p~i~~-~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kn 45 (111)
T cd05772 2 VRAKPSVPVVSG-PSGRANPGQSVNFTCSAHGFSPRDITVKWLKN 45 (111)
T ss_pred cccCCCCcEeCC-chhccCCCCCEEEEEEEeeEeCCCCEEEEEEC
Confidence 557888888864 34455678889999999998996 68999975
No 122
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.83 E-value=3.2e-05 Score=41.95 Aligned_cols=29 Identities=24% Similarity=0.530 Sum_probs=25.5
Q ss_pred eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 10 RPDSGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
+...+.++|+|.+++.+ |+|.|.|.+...
T Consensus 58 ~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~ 86 (98)
T cd05716 58 DPDNGVFTVTLNQLRKE-DAGWYWCGVGDD 86 (98)
T ss_pred cCCCCEEEEEEcCCCHH-HCEEEEEEcccC
Confidence 45577899999999999 999999998864
No 123
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.81 E-value=7.3e-05 Score=40.74 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=21.9
Q ss_pred EEEEEccceeeccCeEEEEEEEECCC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGS 41 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~ 41 (98)
..|.|.+++.+ |+|.|+|.+.+...
T Consensus 55 ~~L~I~~v~~~-D~G~YtC~~~~~~~ 79 (95)
T cd05897 55 TYLHIIDVSLN-DSGYYTCKLQFTHE 79 (95)
T ss_pred CEEEEEEcChh-hCEEEEEEEEEeeC
Confidence 35999999999 99999999998633
No 124
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.80 E-value=5.6e-05 Score=42.28 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=27.8
Q ss_pred eEEEEe--CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 5 EIIDYR--PDSGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 5 ~~~~~~--~~~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
.|+.+. ...+.++|+|.+++.+ |+|.|.|.+...
T Consensus 59 ~R~~~~~~~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~~ 94 (116)
T cd07706 59 GRYSVNFQKAQKSISLTISALQLE-DSAKYFCALSTL 94 (116)
T ss_pred CeEEEEEeccCCEEEEEECCCCHH-HCEEEEEEEECC
Confidence 455543 5567899999999999 999999999863
No 125
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.78 E-value=4.9e-05 Score=40.26 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=22.3
Q ss_pred CeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 14 GRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 14 ~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
....|.|.+++.+ |+|.|+|.+.+.
T Consensus 46 ~~~~l~I~~~~~~-dsG~Y~C~~~~~ 70 (83)
T cd05753 46 SNSNLSIPQATLS-DSGSYHCSGIIG 70 (83)
T ss_pred CCceEEECccCHH-HCEEEEEEEEeC
Confidence 3467999999999 999999999985
No 126
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.78 E-value=3.9e-05 Score=42.27 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=26.8
Q ss_pred EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866 6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~ 38 (98)
++........++|+|.+++.+ |+|.|.|.+.+
T Consensus 61 r~~~~~~~~~~~L~I~~~~~~-Dsg~Y~Ca~~~ 92 (106)
T cd04980 61 RFSGSGSGTDFTLTISRVEPE-DAAVYYCQQYG 92 (106)
T ss_pred CEEEeccCCEEEEEECCCChH-HCEEEEEEEeC
Confidence 555555567889999999999 99999999865
No 127
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.78 E-value=7e-05 Score=39.93 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=26.7
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
.|.|.+++.+ |+|.|.|.+.+.. .......+.+.|.
T Consensus 52 ~L~I~~~~~~-D~G~Y~C~a~~~~--~~~~~~~~~l~V~ 87 (89)
T cd04979 52 GLLIRSVSPA-DAGVYTCQSVEHG--FKQTLATYSLNVL 87 (89)
T ss_pred CEEEccCCHH-HCEEEEEEEecCc--cceeEeEEEEEEe
Confidence 4899999999 9999999998752 2344444556554
No 128
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.76 E-value=0.00016 Score=40.04 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=21.2
Q ss_pred EEEEEccceeeccCeEEEEEEEEC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
.+|.|.+++.. |+|.|.|++.+.
T Consensus 70 gSL~I~~v~~~-D~G~Y~~~v~~~ 92 (105)
T cd05774 70 GSLLIQNVTQK-DTGFYTLQTITT 92 (105)
T ss_pred CcEEEecCCcc-cCEEEEEEEEeC
Confidence 37999999999 999999999985
No 129
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.76 E-value=5.2e-05 Score=41.79 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=27.4
Q ss_pred eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866 5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~ 38 (98)
.|+........++|+|.+++.+ |+|.|.|.+..
T Consensus 58 ~rf~~~~~~~~~~L~I~~~~~s-DsgtY~Ca~~~ 90 (104)
T cd05720 58 KRFSGSRSSNSFVLTLKNFQKE-NEGYYFCSVAS 90 (104)
T ss_pred ceEEEEecCCEEEEEECCCCHH-HCEEEEEEEcc
Confidence 4566655568899999999999 99999998764
No 130
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.75 E-value=9e-05 Score=39.74 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.4
Q ss_pred EEEEccceeeccCeEEEEEEEEC
Q psy5866 17 DLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
.|.|.+++.+ |+|.|+|.+...
T Consensus 49 ~L~I~nv~~~-DsG~Y~C~a~e~ 70 (87)
T cd05873 49 GLLIFNASEA-DAGRYQCLSVEK 70 (87)
T ss_pred cEEEeCCCHH-HCEEEEEEEEec
Confidence 4999999999 999999999885
No 131
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.75 E-value=7.7e-05 Score=41.34 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=26.6
Q ss_pred eEEEEeCC-CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 5 EIIDYRPD-SGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 5 ~~~~~~~~-~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
.|+..... ...++|.|.+++.+ |+|.|.|.+...
T Consensus 60 ~r~~~~~~~~~~~~L~I~~~~~~-Dsg~Y~Ca~~~~ 94 (110)
T cd05899 60 DRFSASRPSLTRSSLTIKSAEPE-DSAVYLCASSLG 94 (110)
T ss_pred CceEEECcCCCccEEEECCCChh-hCEEEEEEeeCC
Confidence 34554433 36789999999999 999999998763
No 132
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=97.75 E-value=7e-05 Score=39.57 Aligned_cols=30 Identities=23% Similarity=0.435 Sum_probs=25.9
Q ss_pred CCceecCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDP-QISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~ 97 (98)
.+..+.+|+.+.|.|.+. |.|.| ++.|+++
T Consensus 6 ~~~~v~~G~~v~l~C~a~-G~P~P~~I~W~k~ 36 (81)
T cd05749 6 EDLSVTANTPFNLTCQAV-GPPEPVEILWWQG 36 (81)
T ss_pred CceEEcCCCCEEEEEEee-eecCCeEEEEEEC
Confidence 346788999999999985 89999 7999975
No 133
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=97.73 E-value=5e-05 Score=39.14 Aligned_cols=24 Identities=33% Similarity=0.772 Sum_probs=21.4
Q ss_pred CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 73 EGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 73 ~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
+|+.+.|.|.+. |.|.|.+.|+++
T Consensus 1 eG~~v~l~C~~~-g~P~p~i~W~k~ 24 (74)
T cd05745 1 EGQTVDFLCEAQ-GYPQPVIAWTKG 24 (74)
T ss_pred CCCeEEEEeECC-EecCCEEEEEEC
Confidence 588999999985 899999999975
No 134
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.71 E-value=0.00013 Score=39.62 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=28.5
Q ss_pred CCEEeCCCCceecCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866 60 PPKISPGANPVATEGRAIELVCSTSGGSPDP-QISVTLQ 97 (98)
Q Consensus 60 ~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~ 97 (98)
+|.|.......+.+|+.+.|.|.+. |.|.| .+.|+++
T Consensus 2 pp~i~~~~~~~~~~G~~v~L~C~~~-g~P~P~~v~W~~~ 39 (98)
T cd05758 2 PPIITSEATQYAILGDKGRVECFIF-STPPPDRIVWTWK 39 (98)
T ss_pred CCeEcCCCcEEEeCCCcEEEEEEEc-ccCCCCEeEEEEC
Confidence 3555433556788999999999996 78888 6999864
No 135
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=97.69 E-value=0.00013 Score=38.37 Aligned_cols=31 Identities=26% Similarity=0.487 Sum_probs=26.3
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
....+.+|+++.|.|.+..|.|.|.+.|+++
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~ 34 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKD 34 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEEC
Confidence 3467889999999999856889999999975
No 136
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.68 E-value=0.00014 Score=40.06 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=25.4
Q ss_pred ceecCCCcEEEEEEcCCCCCCCe--EEEEec
Q psy5866 69 PVATEGRAIELVCSTSGGSPDPQ--ISVTLQ 97 (98)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~p~~~--~~W~~~ 97 (98)
..+.+|+.++|+|.+.++.|.+. +.|++.
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG 41 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRG 41 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEeeC
Confidence 45689999999999999999887 699975
No 137
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.68 E-value=9.3e-05 Score=39.07 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.2
Q ss_pred EEEEEccceeeccCeEEEEEEEEC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
..|.|.+++.+ |+|.|.|.+.+.
T Consensus 52 ~~L~I~~v~~~-DsG~Y~C~a~n~ 74 (85)
T cd05754 52 GILTIRNVQLS-DAGTYVCTGSNM 74 (85)
T ss_pred CEEEECCCCHH-HCEEEEEEEecc
Confidence 47999999999 999999999885
No 138
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.67 E-value=0.00024 Score=43.09 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=37.3
Q ss_pred eEEE-EeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC
Q psy5866 5 EIID-YRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP 57 (98)
Q Consensus 5 ~~~~-~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~ 57 (98)
.|++ +...-...+|+|.+++++ |+|.|.|.+..-..+ ...+....|+|...
T Consensus 73 ~Rve~mS~s~~~StItIknVt~s-DeGcY~C~F~tfp~G-~~~~gt~CLtVt~~ 124 (189)
T PHA02987 73 NKIEYLSKSFNESTILIKNVSLK-DNGCYTCIFNTLLSK-NNEKGVVCLNVTTD 124 (189)
T ss_pred CeEEEeccCCCcceEEEEeCChh-hCeEEEEEEEecCCC-CCceeEEEEEEEch
Confidence 3666 345555678999999999 999999999885332 25566678888643
No 139
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=97.66 E-value=9.1e-05 Score=39.78 Aligned_cols=29 Identities=31% Similarity=0.629 Sum_probs=25.5
Q ss_pred CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
...+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus 10 ~v~v~~G~~v~L~C~v~-G~P~p~v~W~k~ 38 (92)
T cd05737 10 VVTIMEGKTLNLTCTVF-GDPDPEVSWLKN 38 (92)
T ss_pred eEEEeCCCcEEEEEEEE-ecCCCeEEEEEC
Confidence 35788999999999985 789999999985
No 140
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.65 E-value=4.8e-05 Score=37.86 Aligned_cols=18 Identities=44% Similarity=0.803 Sum_probs=17.3
Q ss_pred EEEccceeeccCeEEEEEE
Q psy5866 18 LIISNASFERDNGKFECRL 36 (98)
Q Consensus 18 l~I~~v~~~~d~G~y~C~~ 36 (98)
|.|.+++.+ |+|.|+|.|
T Consensus 47 L~i~~v~~~-d~G~Y~C~v 64 (64)
T PF00047_consen 47 LTISNVTPE-DSGTYTCVV 64 (64)
T ss_dssp EEESSCTGG-GTEEEEEEE
T ss_pred EEEccCCHH-HCEEEEEEC
Confidence 999999999 999999986
No 141
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=97.64 E-value=0.00012 Score=39.18 Aligned_cols=29 Identities=28% Similarity=0.565 Sum_probs=25.5
Q ss_pred CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus 9 ~~~v~~G~~v~l~C~~~-G~P~p~v~W~~~ 37 (90)
T cd04972 9 ATVVYEGGTATIRCTAE-GSPLPKVEWIIA 37 (90)
T ss_pred CEEEcCCCcEEEEEEEE-EcCCCeEEEEEC
Confidence 45588999999999996 799999999975
No 142
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=97.64 E-value=0.00015 Score=38.90 Aligned_cols=30 Identities=20% Similarity=0.523 Sum_probs=26.7
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
....+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus 11 ~~~~~~~G~~~~L~C~~~-g~P~p~v~W~k~ 40 (92)
T cd05747 11 RSLTVSEGESARFSCDVD-GEPAPTVTWMRE 40 (92)
T ss_pred ccEEEeCCCcEEEEEEEe-ecCCCEEEEEEC
Confidence 467899999999999986 899999999976
No 143
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.63 E-value=0.00013 Score=40.30 Aligned_cols=28 Identities=36% Similarity=0.566 Sum_probs=24.2
Q ss_pred eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866 10 RPDSGRYDLIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~ 38 (98)
......++|+|.+++.+ |+|.|.|....
T Consensus 66 ~~~~~~~~L~I~~~~~~-Dsg~YyCa~~~ 93 (107)
T cd07700 66 TSDSSRYRLHINRVKPE-DSGTYFCMTVG 93 (107)
T ss_pred ECCCCEEEEEECCCCHH-HCEEEEEeEcC
Confidence 45566889999999999 99999999764
No 144
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=97.63 E-value=8.3e-05 Score=40.89 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=26.4
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
....+.+|+++.|.|.+.+..|+|.+.|+|+
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kd 41 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYD 41 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeC
Confidence 4568889999999999963389999999986
No 145
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=97.62 E-value=0.00021 Score=38.45 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=24.4
Q ss_pred CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
+..+.+|+.+.|.|.+. |. .|.+.|+++
T Consensus 12 ~~~v~~g~~v~l~C~a~-g~-~p~i~W~kn 39 (91)
T cd05740 12 NQPPEDNQPVTLTCEAE-GQ-ATYIWWVNN 39 (91)
T ss_pred ccccccCCcEEEEEEeC-CC-CCEEEEEEC
Confidence 45899999999999996 66 899999975
No 146
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.61 E-value=0.00014 Score=40.64 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=25.6
Q ss_pred EEEEeCCC--CeEEEEEccceeeccCeEEEEEEEE
Q psy5866 6 IIDYRPDS--GRYDLIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 6 ~~~~~~~~--~~~~l~I~~v~~~~d~G~y~C~~~~ 38 (98)
|+.+.... ..++|+|.+++.+ |+|.|.|.+..
T Consensus 65 r~~~~~~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~ 98 (116)
T cd04982 65 KFEARKDVGKSTSTLTIQNLEKE-DSATYYCAYWE 98 (116)
T ss_pred CEEEEEECCCCEEEEEEEECCHH-HCEEEEEEEec
Confidence 44443333 7899999999999 99999999875
No 147
>PHA02633 hypothetical protein; Provisional
Probab=97.60 E-value=0.00035 Score=34.90 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=28.0
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
..|.|-++..+ |+|+|.|...+. ..-...++.++|.
T Consensus 18 ~nLwilpa~~s-DSGiYiC~~rn~---t~c~~~si~l~V~ 53 (63)
T PHA02633 18 NNMLILNPTQS-DSGIYMCITKNE---TYSDMMKFDLCIC 53 (63)
T ss_pred ccEEEeccccc-cCcEEEEEEcCC---CeeEEEEEEEEEe
Confidence 46999999999 999999999874 3444555677775
No 148
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.59 E-value=4.5e-05 Score=39.99 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.8
Q ss_pred EEEEEccceeeccCeEEEEEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~ 38 (98)
.+|+|.++ .+ |+|.|+|++.+
T Consensus 47 ~~l~i~~~-~~-dsG~Y~C~a~~ 67 (78)
T cd05752 47 NSYRIRAA-NN-DSGEYRCQTQG 67 (78)
T ss_pred CeEEEeec-cc-CCEEeEEECCC
Confidence 46899999 99 99999999976
No 149
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.58 E-value=0.00032 Score=36.98 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=25.7
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
....+.+|+.++|.|.+..+.|.+.+.|+++
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~ 39 (85)
T cd05754 9 RSQEVRPGADVSFICRAKSKSPAYTLVWTRV 39 (85)
T ss_pred CceEEcCCCCEEEEEEcCCCCCCcEEEEEEC
Confidence 3457788999999999875678899999975
No 150
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=97.57 E-value=0.00012 Score=37.34 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.2
Q ss_pred CCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 74 GRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 74 g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
|+.+.|.|.+. |.|.|.+.|++.
T Consensus 1 G~~v~L~C~a~-G~P~P~v~W~k~ 23 (69)
T cd05739 1 GGSVNLTCVAV-GAPMPYVKWMKG 23 (69)
T ss_pred CCeEEEEEEee-ecCCCEEEEEEC
Confidence 56799999996 899999999874
No 151
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=97.57 E-value=0.00017 Score=37.87 Aligned_cols=28 Identities=14% Similarity=0.456 Sum_probs=24.2
Q ss_pred ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 69 PVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
..+.+|..+.|.|.+. |.|.|.+.|+++
T Consensus 4 ~~v~~G~~~~L~C~~~-g~P~p~i~W~k~ 31 (85)
T cd05857 4 HAVPAANTVKFRCPAA-GNPTPTMRWLKN 31 (85)
T ss_pred EEcCCCCEEEEEEEcC-CCCCCEEEEEEC
Confidence 4577899999999986 789999999986
No 152
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.57 E-value=0.0022 Score=43.37 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=52.0
Q ss_pred CCCCeEEEEEccceeeccCeEEEEEEEECC-CCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC
Q psy5866 11 PDSGRYDLIISNASFERDNGKFECRLKAAG-SGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD 89 (98)
Q Consensus 11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~-~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~ 89 (98)
.-.....|.|+++... |+|.| ++..+. ...........+.+...|....+ ....+.+|+.+..+|.+..-+|+
T Consensus 202 ktt~~m~v~I~svD~~-t~Gy~--~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV---~a~PVL~Ge~YkAtC~vAnYYPP 275 (490)
T PHA03271 202 KTTNTMGVEIRNVDYA-DNGYI--QVIMRDPFNRPLLDKHIYIRVCQRPASVDV---LAPPVLSGENYKASCIVRHFYPP 275 (490)
T ss_pred cccceeeEEEEEeecc-cceEE--EEEecCCCCCccccceEEEEEEecCCCccc---cCCccccCCCceEEEEeeeecCC
Confidence 3445678999999999 99955 333321 11234444445555433322223 33578899999999999877774
Q ss_pred --CeEEEEec
Q psy5866 90 --PQISVTLQ 97 (98)
Q Consensus 90 --~~~~W~~~ 97 (98)
..++|+++
T Consensus 276 ~SvrlrWf~n 285 (490)
T PHA03271 276 GSVYVSWRQN 285 (490)
T ss_pred CceEEEEEeC
Confidence 36899975
No 153
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.56 E-value=5.9e-05 Score=40.14 Aligned_cols=25 Identities=52% Similarity=0.925 Sum_probs=21.3
Q ss_pred CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 73 EGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 73 ~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
.|+.+.++|.+.+++|+|.++|+.+
T Consensus 13 ~~~~~~~~C~s~~~~P~~~i~W~~~ 37 (89)
T PF08205_consen 13 EGEEVTLTCSSSGGYPPPQITWYLD 37 (89)
T ss_dssp STEEEEEEEEEEEEBS-EEEEEEET
T ss_pred cceEEEEEEEeCCeECCeEEEEEEC
Confidence 3678999999999999999999865
No 154
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.56 E-value=0.00022 Score=37.83 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=25.7
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
....+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus 9 ~~~~~~~g~~v~l~C~~~-g~P~p~v~W~k~ 38 (88)
T cd04968 9 KDTYALKGQNVTLECFAL-GNPVPQIKWRKV 38 (88)
T ss_pred CceEEeCCCcEEEEEEee-EeCCCEEEEEEC
Confidence 446688999999999985 889999999985
No 155
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.55 E-value=0.00015 Score=39.59 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=22.2
Q ss_pred eEEEEEccceeeccCeEEEEEEEECC
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAG 40 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~ 40 (98)
+.+|.+++|+.+ |+|.|.|.|.+..
T Consensus 59 ~G~L~fs~v~~~-D~g~Y~C~A~n~~ 83 (96)
T cd05727 59 NGNLYIAKVEAS-DRGNYSCFVSSPS 83 (96)
T ss_pred CCcEEEeecCHh-hCceeEEEEEecc
Confidence 346999999999 9999999999853
No 156
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=97.55 E-value=0.00014 Score=37.83 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=19.0
Q ss_pred EEEEEcccee----eccCeEEEEEEEECC
Q psy5866 16 YDLIISNASF----ERDNGKFECRLKAAG 40 (98)
Q Consensus 16 ~~l~I~~v~~----~~d~G~y~C~~~~~~ 40 (98)
.+|.|.+++. + |+|.|+|.|.|..
T Consensus 39 g~L~i~~~~~~~~~~-d~G~Y~C~A~N~~ 66 (77)
T cd05733 39 GTLVIDNMNGGRAED-YEGEYQCYASNEL 66 (77)
T ss_pred CEEEEeccCCCCCcC-CCEEEEEEEEcCC
Confidence 4577877753 6 8999999999963
No 157
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.54 E-value=0.0002 Score=39.12 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=27.6
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
....+.+|+.+.|.|....|.|.+.+.|+++
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~ 41 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLN 41 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEEC
Confidence 3457889999999999999999999999986
No 158
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=97.53 E-value=0.00016 Score=38.48 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=25.4
Q ss_pred CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
...+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus 4 ~~~v~~G~~v~l~c~~~-G~P~P~v~W~k~ 32 (86)
T cd05894 4 TIVVVAGNKLRLDVPIS-GEPAPTVTWSRG 32 (86)
T ss_pred EEEEEcCCEEEEEeeEe-ecCCCeEEEEEC
Confidence 45778999999999985 899999999975
No 159
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.53 E-value=0.00021 Score=37.85 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=25.9
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
.+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus 7 ~~~~~~~G~~~~l~C~~~-g~p~p~v~W~k~ 36 (85)
T cd05728 7 SDTEADIGSSLRWECKAS-GNPRPAYRWLKN 36 (85)
T ss_pred CccEEcCCCcEEEEEEee-EeCCCEEEEEEC
Confidence 346788999999999985 799999999975
No 160
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.52 E-value=0.00029 Score=37.97 Aligned_cols=29 Identities=34% Similarity=0.604 Sum_probs=24.8
Q ss_pred CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
...+.+|+++.|.|.+. |.|.|.+.|+++
T Consensus 8 ~~~~~~g~~v~l~C~v~-g~P~p~i~W~k~ 36 (95)
T cd05722 8 DIVAVRGGPVVLNCSAE-GEPPPKIEWKKD 36 (95)
T ss_pred CeEEcCCCCEEEeeecc-cCCCCEEEEEEC
Confidence 45677899999999986 789999999985
No 161
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=97.50 E-value=0.00052 Score=35.72 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=18.4
Q ss_pred EEEEEccce---eeccCeEEEEEEEECC
Q psy5866 16 YDLIISNAS---FERDNGKFECRLKAAG 40 (98)
Q Consensus 16 ~~l~I~~v~---~~~d~G~y~C~~~~~~ 40 (98)
.+|.|.+++ ..+|+|.|+|.|.|..
T Consensus 39 ~~L~i~~~~~~~~~~d~G~Y~C~A~N~~ 66 (77)
T cd05875 39 GTLVIDFSGGGRPEDYEGEYQCFARNNL 66 (77)
T ss_pred ceEEEeccCCCCCCCCCEEEEEEEEecc
Confidence 468887764 2326999999999963
No 162
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=97.49 E-value=0.00031 Score=38.29 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=26.6
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
....+..|+.+.|.|.+. |.|.+++.|+++
T Consensus 8 ~~~~v~~G~~v~l~C~~~-G~p~p~v~W~kd 37 (98)
T cd05762 8 EDMKVRAGESVELFCKVT-GTQPITCTWMKF 37 (98)
T ss_pred cCEEEECCCEEEEEEEEc-ccCCCceEEEEC
Confidence 457889999999999995 899999999975
No 163
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.49 E-value=0.0003 Score=37.99 Aligned_cols=23 Identities=26% Similarity=0.694 Sum_probs=19.9
Q ss_pred EEEEccce-eeccCeEEEEEEEECC
Q psy5866 17 DLIISNAS-FERDNGKFECRLKAAG 40 (98)
Q Consensus 17 ~l~I~~v~-~~~d~G~y~C~~~~~~ 40 (98)
.|.|.++. .. |+|.|+|.|.|..
T Consensus 58 ~L~I~~~~~~~-D~G~Y~C~A~N~~ 81 (93)
T cd05849 58 NLVINNPDKYK-DAGRYVCIVSNIY 81 (93)
T ss_pred EEEECcCCcCC-CCEEEEEEEEeCc
Confidence 68999985 68 9999999999963
No 164
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.49 E-value=0.00029 Score=38.24 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=20.7
Q ss_pred EEEEEccceeeccCeEEEEEEEEC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
.+|+|.++..+||.|.|.|.|.|.
T Consensus 64 s~L~I~~v~~~d~~G~Y~C~A~N~ 87 (98)
T cd05758 64 STLTISNTQESDFQTSYNCTAWNS 87 (98)
T ss_pred EEEEECCccccccceeEEEEEEcC
Confidence 479999999962599999999996
No 165
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.48 E-value=0.00053 Score=35.88 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=23.9
Q ss_pred CCceecCCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPD-PQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~ 97 (98)
+...+.+|+.+.|.|.+. +.|. +.+.|+++
T Consensus 8 ~~~~v~~G~~V~L~C~~~-~~p~~~~~~W~kn 38 (78)
T cd05752 8 PWTTIFQGEKVTLTCNGF-NSPEQNSTQWYHN 38 (78)
T ss_pred CCeEeeCCCCEEEEEeCC-CCCCCccEEEEEC
Confidence 346788999999999986 4554 57999986
No 166
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.48 E-value=0.00017 Score=34.87 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=21.6
Q ss_pred CeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 14 GRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 14 ~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
....|.|.++... |+|.|.|.+.+.
T Consensus 37 ~~~~L~i~~~~~~-d~G~Y~C~~~n~ 61 (63)
T smart00408 37 SGSTLTIKSVSLE-DSGEYTCVAENS 61 (63)
T ss_pred CCcEEEEeeCCcc-cCEEEEEEEecC
Confidence 3457999999999 999999999863
No 167
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=97.48 E-value=0.00023 Score=38.28 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=25.9
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
....+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus 9 ~~v~v~eG~~v~L~C~v~-g~P~p~i~W~k~ 38 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVF-GNPDPEVIWFKN 38 (92)
T ss_pred CcEEEcCCCEEEEEEEEE-EeCCCeEEEEEC
Confidence 346788999999999985 789999999986
No 168
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=97.44 E-value=0.00043 Score=38.30 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEEEccceeeccCeEEEEEEEEC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
..|.|.++.++ |+|.|.|.+.+.
T Consensus 70 ~~Lwf~Pa~~e-DSG~Y~C~~rN~ 92 (104)
T cd05896 70 DSIWFRPAELQ-DSGLYTCVLRNS 92 (104)
T ss_pred CEEEEEeCChh-hCeEEEEEECCC
Confidence 35999999999 999999999984
No 169
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=97.44 E-value=0.00064 Score=42.63 Aligned_cols=23 Identities=30% Similarity=0.691 Sum_probs=21.0
Q ss_pred EEEEEccceeeccCeEEEEEEEEC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
..|.|.+++.+ |+|.|+|.+...
T Consensus 188 ~~L~I~~V~~~-DsG~YtC~a~~~ 210 (227)
T PHA02826 188 STLVIKSATHD-DSGIYTCNLRFN 210 (227)
T ss_pred CEEEECcCCHH-hCEEEEEEEEEe
Confidence 47999999999 999999999874
No 170
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=97.42 E-value=0.00034 Score=37.60 Aligned_cols=29 Identities=31% Similarity=0.667 Sum_probs=25.2
Q ss_pred CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
...+..|+.+.|.|.+. |.|.|.+.|+++
T Consensus 12 ~~~~~~G~~v~L~C~~~-g~P~p~v~W~k~ 40 (95)
T cd05730 12 NATANLGQSVTLACDAD-GFPEPTMTWTKD 40 (95)
T ss_pred ceEEeCCCCEEEEEecc-EeCCCEEEEEEC
Confidence 35688999999999985 799999999975
No 171
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=97.40 E-value=0.00026 Score=38.24 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=21.2
Q ss_pred CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 73 EGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 73 ~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
+|+.+.|.|.+. |.|.|.++|+++
T Consensus 18 ~g~~v~l~C~~~-G~P~P~i~W~k~ 41 (94)
T cd05848 18 DEKKVILNCEAR-GNPVPTYRWLRN 41 (94)
T ss_pred CCCEEEEEEEee-ecCCCEEEEEEC
Confidence 578899999985 899999999975
No 172
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=97.40 E-value=0.0006 Score=34.76 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=17.9
Q ss_pred EEEEEccceeeccCeEEEEEEEEC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
..|+|.++ . |+|.|+|.|.|.
T Consensus 38 ~~L~i~~~--~-d~G~Y~C~A~N~ 58 (69)
T cd05739 38 NVLELTNI--Y-ESANYTCVAISS 58 (69)
T ss_pred cEEEEecc--c-cCeeEEEEEEeC
Confidence 46888886 6 899999999996
No 173
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=97.38 E-value=0.0004 Score=37.62 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=22.4
Q ss_pred eecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 70 VATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 70 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
....|+.+.|.|.+. |.|.|.++|+++
T Consensus 13 ~~~~g~~v~l~C~~~-G~P~P~v~W~~~ 39 (97)
T cd05869 13 AMELEEQITLTCEAS-GDPIPSITWRTS 39 (97)
T ss_pred EEEcCCCEEEEEEee-EeCCCEEEEEEC
Confidence 344579999999986 789999999874
No 174
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=97.38 E-value=0.00037 Score=37.66 Aligned_cols=23 Identities=39% Similarity=0.728 Sum_probs=19.6
Q ss_pred EEEEccce-eeccCeEEEEEEEECC
Q psy5866 17 DLIISNAS-FERDNGKFECRLKAAG 40 (98)
Q Consensus 17 ~l~I~~v~-~~~d~G~y~C~~~~~~ 40 (98)
+|.|.++. .. |+|.|+|.|.|..
T Consensus 59 ~L~i~~~~~~~-D~G~Y~C~A~N~~ 82 (94)
T cd05848 59 NLIISNPSEVK-DSGRYQCLATNSI 82 (94)
T ss_pred eEEEccCCccC-cCEEEEEEEEcCC
Confidence 58898874 68 9999999999963
No 175
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=97.37 E-value=0.00031 Score=37.15 Aligned_cols=30 Identities=27% Similarity=0.574 Sum_probs=26.3
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
....+.+|+++.|.|.+. +.|.+.+.|+++
T Consensus 8 ~~~~v~~G~~~~l~c~~~-~~p~~~v~W~~~ 37 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVS-GNPPPTVTWYKN 37 (90)
T ss_dssp SEEEEETTSEEEEEEEEE-ESSSSEEEEEET
T ss_pred CCEEEeCCCEEEEEEEEE-eCCCCccccccc
Confidence 557899999999999996 678999999975
No 176
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.37 E-value=0.00035 Score=38.08 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=27.1
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
....+.+|+.+.|.|....|.|.|.+.|+.+
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~ 41 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNS 41 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECC
Confidence 4578999999999998777999999999864
No 177
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.36 E-value=0.00043 Score=37.16 Aligned_cols=26 Identities=15% Similarity=0.496 Sum_probs=22.1
Q ss_pred CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 13 SGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
.....+.|.+|+.+ |+|.|+|+..+.
T Consensus 50 ~~~~~f~i~~v~~~-~~G~Y~C~~~~~ 75 (91)
T cd05751 50 QNKAKFFIPSMKRE-HAGRYRCYYRSG 75 (91)
T ss_pred ceeEEEEccCCChh-HCEEEEEEEECC
Confidence 34567999999999 999999998863
No 178
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=97.34 E-value=0.00071 Score=36.52 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=19.1
Q ss_pred EEEEccce-eeccCeEEEEEEEECC
Q psy5866 17 DLIISNAS-FERDNGKFECRLKAAG 40 (98)
Q Consensus 17 ~l~I~~v~-~~~d~G~y~C~~~~~~ 40 (98)
+|.|.++. .. |+|.|+|.|.|..
T Consensus 59 ~L~I~~~~~~~-D~G~Y~C~A~N~~ 82 (94)
T cd05850 59 NLVINNPQKAR-DAGSYQCLAINRC 82 (94)
T ss_pred eEEEccCCccC-cCEEEEEEEEcCc
Confidence 58888765 58 9999999999964
No 179
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.30 E-value=0.00046 Score=34.80 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=22.1
Q ss_pred CCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866 12 DSGRYDLIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~ 38 (98)
......|.|.++..+ |.|.|+|.|.|
T Consensus 50 ~~~~~~L~i~~v~~~-~~g~y~C~a~N 75 (75)
T PF13927_consen 50 SSSNSTLTISNVTRS-DNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEEESSCCGG-GTEEEEEEEEE
T ss_pred cceeeEEEEccCCHH-hCcEEEEEEEC
Confidence 344567999999999 99999999975
No 180
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.29 E-value=0.0015 Score=36.77 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=22.2
Q ss_pred CCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866 12 DSGRYDLIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~ 38 (98)
....++|+|.++..+ |+|.|.|.+..
T Consensus 72 ~~~~~~L~I~~~~~~-Dsa~YyCa~~~ 97 (117)
T cd04981 72 SKSTVYLQLNSLTPE-DTAVYYCARGL 97 (117)
T ss_pred cCCEEEEEECCCCHH-HCEEEEEEEEc
Confidence 345678999999999 99999998764
No 181
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=97.29 E-value=0.0018 Score=34.64 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=19.8
Q ss_pred cceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 22 NASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 22 ~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
+++.+ |+|.|+|.+.|..+ ...+..+.|.|
T Consensus 70 ~~~~~-D~G~Y~C~a~N~~G--~~~s~~~~l~v 99 (100)
T cd07693 70 RKGRS-DEGVYVCVAHNSLG--EAVSRNASLEV 99 (100)
T ss_pred CCCcC-cCEEEEEEEEcccc--ceecceEEEEe
Confidence 34688 99999999999632 22344445544
No 182
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.28 E-value=0.00039 Score=37.89 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=21.0
Q ss_pred EEEEEccceeeccCe-EEEEEEEEC
Q psy5866 16 YDLIISNASFERDNG-KFECRLKAA 39 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G-~y~C~~~~~ 39 (98)
.+|.|++|..+ |+| .|.|.|.+.
T Consensus 58 GnL~fs~v~~~-D~g~~Y~C~a~~~ 81 (95)
T cd05845 58 GNLYFANVEEQ-DSHPDYICHAHFP 81 (95)
T ss_pred ceEEEEEEehh-hCCCCeEEEEEcc
Confidence 46999999999 999 899999985
No 183
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.27 E-value=0.00097 Score=35.22 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=25.3
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
+...+.+|+.++|.|.+..+.+.+.+.|+++
T Consensus 7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~ 37 (83)
T cd05753 7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRD 37 (83)
T ss_pred CcceecCCCCEEEEeeCCCCCcceEEEEEEC
Confidence 3457889999999999866667788999975
No 184
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.25 E-value=0.00083 Score=36.75 Aligned_cols=31 Identities=16% Similarity=0.416 Sum_probs=26.3
Q ss_pred CCceecCCCcEEE-EEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIEL-VCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l-~C~~~~~~p~~~~~W~~~ 97 (98)
....+.+|..+.+ .|.+.+|+|++.++|+..
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~ 40 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETN 40 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCC
Confidence 4456778888888 999999999999999864
No 185
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=97.24 E-value=0.0016 Score=33.84 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=16.9
Q ss_pred EEEEcccee----eccCeEEEEEEEEC
Q psy5866 17 DLIISNASF----ERDNGKFECRLKAA 39 (98)
Q Consensus 17 ~l~I~~v~~----~~d~G~y~C~~~~~ 39 (98)
+|.|..+.. . |+|.|+|.|.|.
T Consensus 40 ~l~i~~~~~~~~~~-d~G~Y~C~A~N~ 65 (77)
T cd05874 40 TLVINIMNGEKAEA-YEGVYQCTARNE 65 (77)
T ss_pred eEEEeccccCCCCC-CCEEEEEEEEcC
Confidence 566766653 4 689999999995
No 186
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.23 E-value=0.0015 Score=34.89 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEccceeeccCeEEEEEEEEC
Q psy5866 18 LIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 18 l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
|.|.+++.. |+|.|.|.+.-.
T Consensus 49 LlI~~~~~~-dsG~Y~C~s~E~ 69 (85)
T cd05872 49 LLILVTSPE-HSGTYRCYSEEE 69 (85)
T ss_pred CEEEECCHh-hCEEEEEEEecC
Confidence 789999999 999999998863
No 187
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=97.22 E-value=0.00058 Score=35.36 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=23.3
Q ss_pred ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 69 PVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
.....|+.+.|.|.+. |.|.|.+.|+++
T Consensus 4 ~~~~~G~~v~L~C~~~-g~p~p~i~W~k~ 31 (82)
T cd05856 4 IARPVGSSVRLKCVAS-GNPRPDITWLKD 31 (82)
T ss_pred eeccCCCeEEEEEEee-EeCCCcEEEEEC
Confidence 3456789999999985 788899999975
No 188
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.22 E-value=0.00083 Score=34.38 Aligned_cols=35 Identities=34% Similarity=0.632 Sum_probs=27.1
Q ss_pred CEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 61 PKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 61 p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
|.|.. ....+.+|+.+.|.|.+. +.|.+.+.|+++
T Consensus 2 P~l~~-~~~~v~~g~~~~l~C~~~-~~p~~~~~w~~~ 36 (80)
T PF13895_consen 2 PVLSS-SPQSVEEGDSVTLTCSVS-GNPPPQVQWYKN 36 (80)
T ss_dssp -EEEE-ESSEEETTSEEEEEEEEE-SSSSSEEEEEET
T ss_pred cEEEc-cceEEeCCCcEEEEEEEE-cccceeeeeeee
Confidence 45543 236788999999999986 777899999874
No 189
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.21 E-value=0.0017 Score=33.15 Aligned_cols=34 Identities=38% Similarity=0.541 Sum_probs=24.8
Q ss_pred EEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 18 l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
+.|.++..+ |+|.|+|.+.+.. ....+..+.|+|
T Consensus 47 ~~~~~~~~~-~~g~y~C~~~~~~--~~~~s~~~~v~V 80 (80)
T PF13895_consen 47 LFIPNVSPE-DSGNYTCRASNGS--GSNTSTSVNVTV 80 (80)
T ss_dssp EEESSEEGG-GTEEEEEEEEETT--EEEEEEEEEEEE
T ss_pred eeeeeeccc-cCEEEEEEEEeCC--CCeEeeeEEeeC
Confidence 778899999 9999999999842 234445555544
No 190
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=97.21 E-value=0.0013 Score=35.49 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=20.5
Q ss_pred CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 73 EGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 73 ~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
.|+.+.|.|.+. |.|.|+++|+++
T Consensus 18 ~g~~v~l~C~a~-g~P~p~i~W~~~ 41 (94)
T cd05850 18 PEEKVTLGCRAR-ASPPATYRWKMN 41 (94)
T ss_pred CCCeEEEEeEce-eCCCCEEEEEEC
Confidence 356899999995 899999999975
No 191
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.16 E-value=0.0018 Score=35.49 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=26.8
Q ss_pred CCEEeCCCCceecCCCcEEEEEEcCCCCCCC-eEEEEe
Q psy5866 60 PPKISPGANPVATEGRAIELVCSTSGGSPDP-QISVTL 96 (98)
Q Consensus 60 ~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~ 96 (98)
+|.|.......+.+|+.+.|.|.+. +.|.| .+.|..
T Consensus 2 pP~i~~~~s~~~~~G~~~~L~C~~~-s~P~P~~i~W~w 38 (98)
T cd05898 2 PPIISSEQVQYAVRGERGKVKCFIG-STPPPDRIAWAW 38 (98)
T ss_pred CCEEecCceEEEeCCCcEEEEEEEc-cCCCCcEEEEEE
Confidence 4667555677899999999999996 45555 567754
No 192
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.15 E-value=0.0072 Score=41.38 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=54.5
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC--CeE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD--PQI 92 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~ 92 (98)
.+.|+|..++.. ++|.|+=++.+.+ +.......+.+..+.+|.. .+ ....+.+|+.+..+|.+..-+|+ ..+
T Consensus 197 ~~~LtI~sltaa-TeGvYtWr~~~~n-~t~~~~~~VtV~~yr~Psv-sv---~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~ 270 (486)
T PHA03273 197 KFPLTIKSVDWR-TAGVYVWSLYAKN-GTLVNSTSVTVSTYNAPLV-DL---SVHPSLKGENYRAVCVVASYFPHSSVKL 270 (486)
T ss_pred ccceEEEecchh-hceEEEEEEecCC-CceeeeeEEEEEEecCCcc-cc---cCCccccCCCceEEEEeeeecCCCceEE
Confidence 467999999999 9999987765532 2334444455555655542 22 34678899999999999877774 468
Q ss_pred EEEec
Q psy5866 93 SVTLQ 97 (98)
Q Consensus 93 ~W~~~ 97 (98)
+|+++
T Consensus 271 rWf~d 275 (486)
T PHA03273 271 RWYKN 275 (486)
T ss_pred EEEeC
Confidence 99975
No 193
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.15 E-value=0.00054 Score=36.62 Aligned_cols=22 Identities=36% Similarity=0.732 Sum_probs=19.1
Q ss_pred EEEEccce-eeccCeEEEEEEEEC
Q psy5866 17 DLIISNAS-FERDNGKFECRLKAA 39 (98)
Q Consensus 17 ~l~I~~v~-~~~d~G~y~C~~~~~ 39 (98)
.|.|.++. .. |+|.|+|.+.|.
T Consensus 59 ~L~i~~~~~~~-d~G~Y~C~a~N~ 81 (91)
T cd04967 59 NLVISNPSKAK-DAGRYQCLASNI 81 (91)
T ss_pred EEEEecCCccC-CCEEEEEEEEcC
Confidence 58898886 48 999999999985
No 194
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=97.11 E-value=0.00066 Score=37.29 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=24.9
Q ss_pred CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
...+..|+.+.|.|.+. |.|+|.+.|+++
T Consensus 12 ~~~~~~~~~~~l~~~v~-g~P~P~v~W~kd 40 (101)
T cd05859 12 LEFANLHEVKEFVVEVE-AYPPPQIRWLKD 40 (101)
T ss_pred eEEEecCCcEEEEEEEE-EeCCCceEEEEC
Confidence 35677889999999985 899999999986
No 195
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.08 E-value=0.0027 Score=35.00 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=27.9
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
..|+|.+++.+ |+|.|+|.+.|. ....+..+.|.|
T Consensus 65 S~L~L~Rlk~~-E~G~YTf~a~N~---~~~~s~tF~l~v 99 (101)
T cd05860 65 SELHLTRLKGT-EGGTYTFLVSNS---DASASVTFNVYV 99 (101)
T ss_pred EEEEEeecChh-hCcEEEEEEECC---CCeEEEEEEEEE
Confidence 46899999999 999999999985 455555666655
No 196
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.05 E-value=0.002 Score=34.79 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=19.9
Q ss_pred CCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 74 GRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 74 g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
+..+.|.|.+. |.|.|+++|+++
T Consensus 19 ~~~v~l~C~a~-G~P~P~i~W~k~ 41 (93)
T cd05849 19 EGKVSVNCRAR-ANPFPIYKWRKN 41 (93)
T ss_pred CCeEEEeCcCc-cCCCCEEEEEEC
Confidence 44699999995 899999999975
No 197
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=97.01 E-value=0.0015 Score=35.53 Aligned_cols=29 Identities=10% Similarity=0.275 Sum_probs=25.3
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTL 96 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~ 96 (98)
.+..+.+|+.+.|.|.+. +.|.|.+.|++
T Consensus 5 ~~~tv~~G~tv~L~C~v~-g~~~~~v~W~k 33 (95)
T cd05882 5 QDETVAVGGTVTLKCGVK-EHDNSSLQWSN 33 (95)
T ss_pred ccEEEecCCcEEEEEEEe-CCCCCeEEEec
Confidence 457889999999999986 68899999976
No 198
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=96.99 E-value=0.0018 Score=34.77 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=17.6
Q ss_pred EEEEccc-----eeeccCeEEEEEEEEC
Q psy5866 17 DLIISNA-----SFERDNGKFECRLKAA 39 (98)
Q Consensus 17 ~l~I~~v-----~~~~d~G~y~C~~~~~ 39 (98)
++.|.++ +.. |+|.|+|.+.|.
T Consensus 55 ~l~i~~v~~~~~~~~-D~G~Y~C~a~N~ 81 (95)
T cd05722 55 SLLITSVVHSKHNKP-DEGFYQCVAQND 81 (95)
T ss_pred eEEEeeeeccCCCCC-cCEEEEEEEECC
Confidence 4666666 578 999999999985
No 199
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=96.99 E-value=0.0025 Score=34.62 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.2
Q ss_pred CceecCCCcEEEEEEcCCCCC-CCeEEEEe
Q psy5866 68 NPVATEGRAIELVCSTSGGSP-DPQISVTL 96 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~ 96 (98)
...+.+|+.+.|.|.+. |.| +|.+.|++
T Consensus 9 ~~~v~~G~~v~l~C~v~-G~P~~p~i~W~~ 37 (96)
T cd05865 9 QGEISVGESKFFLCQVA-GEAKDKDISWFS 37 (96)
T ss_pred ccEECCCCeEEEEEEEe-CCCCCCEEEEEC
Confidence 34678899999999996 677 57999996
No 200
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.98 E-value=0.014 Score=39.79 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=54.9
Q ss_pred EEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC--CeEEEE
Q psy5866 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD--PQISVT 95 (98)
Q Consensus 18 l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~ 95 (98)
|.|..++.. .+|.|+=...+.+. .......+.+..+.+|.. .+ ....+.+|+.+..+|.+..-+|. ..++|+
T Consensus 184 L~I~slt~a-TeGvY~Wr~~~~~~-~~~~~~~VtV~~yr~Psv-sv---~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf 257 (466)
T PHA03270 184 LVIQELTLA-TQGMYYWARGPADR-PHRYGTWTRVRMFRRPSL-SI---RPHAVLEGEPFGATCVAANYYPGDRAAFRWF 257 (466)
T ss_pred EEEEEcccc-cceEEEEEEecCCC-ceeeeeEEEEEEecCCcc-cc---cCCccccCCCceEEEEeeeecCCCceEEEEE
Confidence 999999999 99999999877543 344445566666655542 22 33578899999999999877774 468999
Q ss_pred ec
Q psy5866 96 LQ 97 (98)
Q Consensus 96 ~~ 97 (98)
++
T Consensus 258 ~n 259 (466)
T PHA03270 258 EG 259 (466)
T ss_pred eC
Confidence 75
No 201
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=96.94 E-value=0.0083 Score=32.84 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=21.9
Q ss_pred CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 13 SGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
.....|+|.++...||.|.|.|.|.|.
T Consensus 61 g~~S~L~I~~~~~~d~~g~Y~C~a~N~ 87 (98)
T cd05898 61 GVLSTLTINNIMEADFQTHYNCTAWNS 87 (98)
T ss_pred CcEEEEEECCCccccCCcEEEEEEEeC
Confidence 345679999998872379999999996
No 202
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=96.85 E-value=0.0025 Score=33.82 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=23.3
Q ss_pred CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
...+.+|+.+.|.|.+. + |.+.+.|+++
T Consensus 5 ~~~v~~g~~v~L~C~~~-~-p~~~i~W~k~ 32 (89)
T cd04979 5 VVTVVEGNSVFLECSPK-S-NLASVVWLFQ 32 (89)
T ss_pred EEEEECCCcEEEEEeCC-C-CCceEEEEEC
Confidence 35678899999999975 4 7789999986
No 203
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=96.77 E-value=0.0043 Score=32.16 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=23.3
Q ss_pred ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 69 PVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
..+..|+.+.|.|.+. +.|.+.+.|+++
T Consensus 4 ~~~~~G~~~~l~C~~~-~~p~~~v~W~k~ 31 (85)
T cd05729 4 HAVPAGSTVRLKCPAS-GNPRPTITWLKD 31 (85)
T ss_pred eEecCCCcEEEEEEcC-CCCCCeEEEEEC
Confidence 4556799999999986 678899999875
No 204
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=96.75 E-value=0.0039 Score=32.89 Aligned_cols=36 Identities=8% Similarity=0.178 Sum_probs=25.4
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
+|++...+-+ |.+.|.|++.|.+...........|.
T Consensus 44 ~L~~~~~~~D-dg~~~~C~A~n~a~~~~~~~~~~~l~ 79 (80)
T cd05885 44 TIRFPVDRKD-DGAILSCEASHPALVSQKKQTQYSLD 79 (80)
T ss_pred EEEEEeeecc-CCcEEEEEEEChhhCCCCeeEEEEEe
Confidence 5788777777 89999999999755444444444444
No 205
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=96.72 E-value=0.0021 Score=34.77 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=24.3
Q ss_pred CceecCCCcEEEEEEcCCC----CCCCeEEEEec
Q psy5866 68 NPVATEGRAIELVCSTSGG----SPDPQISVTLQ 97 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~ 97 (98)
...+.+|+.+.|.|.+.+. .|.+.+.|+++
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~ 41 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKS 41 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEc
Confidence 3567789999999998643 68899999986
No 206
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=96.69 E-value=0.003 Score=34.20 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=25.0
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTL 96 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~ 96 (98)
++..+.+|+++.|.|.+. +.|.+.+.|++
T Consensus 5 ~~v~v~eG~~v~L~C~~~-~~p~~~v~W~~ 33 (95)
T cd07701 5 QNVTVVEGGTANLTCRVD-QNDNTSLQWSN 33 (95)
T ss_pred ceEEEecCCcEEEEEEEe-cCCceEEEEeC
Confidence 457899999999999986 67889999974
No 207
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=96.69 E-value=0.0046 Score=32.28 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=23.7
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT 53 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~ 53 (98)
.|.|.....+ |.|.|+|.+.+.+.. .....++.|.
T Consensus 47 ~L~i~~~~~~-~~~~y~C~a~n~~l~-~~~~~s~~l~ 81 (82)
T cd05759 47 TLPITPSDHD-TGRTFTCRARNEALP-TGKETSVTLD 81 (82)
T ss_pred EEEEeCceec-CCCEEEEEEcCccCC-CCcEEEEEEc
Confidence 5778788887 889999999986432 2234444443
No 208
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.66 E-value=0.0054 Score=33.87 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=24.2
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
....+.+|++++|.|.... +...+.|++|
T Consensus 6 ~~~~v~~G~~v~l~C~~~~--~~~~v~Wykq 34 (110)
T cd05899 6 RYLIKGRGQSVTLRCSQTS--GHDNMYWYRQ 34 (110)
T ss_pred CceEEcCCCcEEEEEEECC--CCCEEEEEEE
Confidence 3467889999999999864 6678999987
No 209
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.65 E-value=0.0039 Score=30.06 Aligned_cols=28 Identities=36% Similarity=0.648 Sum_probs=24.0
Q ss_pred CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 11 PDSGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
.......|.|.+++.. |+|.|.|.+.+.
T Consensus 38 ~~~~~~~l~i~~~~~~-d~g~y~C~~~~~ 65 (74)
T cd00096 38 TSSGSSTLTISNVTLE-DSGTYTCVASNS 65 (74)
T ss_pred cceeEEEEEECccCcc-cCcEEEEEEecC
Confidence 4456778999999999 999999999874
No 210
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=96.62 E-value=0.0041 Score=34.49 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.8
Q ss_pred CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 73 EGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 73 ~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
.|..+.|.|.+. |.|.+.++|+++
T Consensus 22 ~g~~v~L~C~a~-G~P~p~i~W~k~ 45 (109)
T cd05773 22 GSSDANLVCQAQ-GVPRVQFRWAKN 45 (109)
T ss_pred CCCEEEEEEECc-ccCCCEEEEEEC
Confidence 467899999996 799999999975
No 211
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=96.59 E-value=0.0067 Score=31.53 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=22.7
Q ss_pred CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
...+.+|+.+.|.|.+. +. .+.+.|+++
T Consensus 3 ~~~~~~G~~v~l~C~~~-~~-~~~v~W~k~ 30 (79)
T cd04973 3 SYSAHPGDLLQLRCRLR-DD-VQSINWTKD 30 (79)
T ss_pred cEEecCCCCEEEEEEec-CC-CceEEEeeC
Confidence 45678999999999986 44 568999986
No 212
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=96.53 E-value=0.0057 Score=32.87 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=22.6
Q ss_pred ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 69 PVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
....+|+.+.|.|.. +.|.|.+.|++|
T Consensus 6 ~~~~eG~~v~L~C~~--~~p~p~v~Wykq 32 (91)
T cd05871 6 VYGVENNSTFLECLP--KSPQASVKWLFQ 32 (91)
T ss_pred EEEecCCcEEEEEEC--CCCCceEEEEEE
Confidence 457789999999995 468899999975
No 213
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=96.52 E-value=0.0044 Score=33.05 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=20.0
Q ss_pred CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 73 EGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 73 ~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
.+..+.|.|.+. |.|.|.++|+++
T Consensus 18 ~~~~~~l~C~~~-g~p~p~i~W~k~ 41 (91)
T cd04967 18 DEGKVSLNCRAR-GSPPPTYRWLMN 41 (91)
T ss_pred CCCEEEEEEeee-EcCCCEEEEEEC
Confidence 346799999985 789999999975
No 214
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.50 E-value=0.011 Score=32.37 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=23.2
Q ss_pred CceecCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866 68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQ 97 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~ 97 (98)
...+.+|++++|.|.+. +.. ...+.|++|
T Consensus 9 ~~~v~~G~~v~L~C~~~-~~~~~~~~~Wyrq 38 (106)
T cd04980 9 TLSVSPGESATISCKAS-QSVSSNYLAWYQQ 38 (106)
T ss_pred cEEECCCCCEEEEEEEC-CCCCCCcEEEEEE
Confidence 45788999999999975 333 567999987
No 215
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.49 E-value=0.0093 Score=33.62 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=30.4
Q ss_pred ceeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866 3 KVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 3 ~~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~ 38 (98)
.+.++..+.+++..+|.|.+++.+ |.+.|.|....
T Consensus 61 ~r~tcs~~~s~ntv~L~l~~L~a~-DTa~Y~Ca~e~ 95 (115)
T cd05721 61 DGFNCDGTLGNEQVNFTLQNLRAN-QTDIYFCKIEL 95 (115)
T ss_pred CCeEEeEeCCCCEEEEEEcCCCHH-HCeEEEEEeee
Confidence 345678889999999999999999 99999997754
No 216
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.46 E-value=0.0076 Score=33.06 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=24.2
Q ss_pred ceecCCCcEEEEEEcCCCCCC--CeEEEEec
Q psy5866 69 PVATEGRAIELVCSTSGGSPD--PQISVTLQ 97 (98)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~ 97 (98)
....+|..+++.|.+.+++|. +.+.|++.
T Consensus 10 ~~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG 40 (99)
T cd07689 10 GPLEEGKPVTVKCEVPDVYPFDRLEIELLKG 40 (99)
T ss_pred CcccCCceEEEEEEecCcccCCceEEEEecC
Confidence 455899999999999988886 67889864
No 217
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=96.46 E-value=0.0048 Score=30.40 Aligned_cols=24 Identities=29% Similarity=0.652 Sum_probs=19.9
Q ss_pred CCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 74 GRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 74 g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
|+.+.|.|.+..+.+.+.+.|+++
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~ 24 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKN 24 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEET
T ss_pred CCeEEEEeecCCCCCCcEEEEEEC
Confidence 678999999844677889999875
No 218
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.43 E-value=0.015 Score=31.10 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=26.5
Q ss_pred CEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 61 PKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 61 p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
|.+...+...+.+|++++|.|... .+...+.|+++
T Consensus 3 P~L~a~p~~vV~~G~~VtL~C~~~--~~~~~f~l~k~ 37 (91)
T cd05751 3 PSLWAEPSSVVPLGKPVTLRCQGP--YGAVEYRLYRE 37 (91)
T ss_pred CEEEecCCCccCCCCcEEEEEecC--CCCCEEEEEEC
Confidence 556444567889999999999863 56678888864
No 219
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=96.42 E-value=0.013 Score=31.59 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=25.8
Q ss_pred CEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 61 PKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 61 p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
|.|...+...+.+|++++|.|.... +...+.|+|+
T Consensus 2 P~l~a~p~~vV~~G~~VTL~C~~~~--~~~~f~l~k~ 36 (94)
T cd05711 2 PFLSAHPSPVVPSGENVTLQCHSDI--RFDRFILYKE 36 (94)
T ss_pred CEEEecCCCccCCCCeEEEEEecCC--CCCEEEEEEC
Confidence 4554445678889999999998643 4567889876
No 220
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.38 E-value=0.014 Score=32.42 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=28.3
Q ss_pred CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
..++++|.|+.++.+ |+|.|.-++.+..+ ......+++.|+
T Consensus 67 ~~enlaLlIkaAq~q-DSG~Y~LEvT~~sG--~V~~~~FqVsVF 107 (108)
T PF11465_consen 67 TSENLALLIKAAQPQ-DSGLYCLEVTNESG--KVCTKNFQVSVF 107 (108)
T ss_dssp ETTTTEEEESS-SGG-G-EEEEEEEEETTS--CEEEEEEEEEEE
T ss_pred eccCceEEEeecCcc-cCceEEEEEEcCCC--cEEEEEEEEEee
Confidence 344568999999999 99999999998643 334445565554
No 221
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=96.34 E-value=0.0044 Score=31.06 Aligned_cols=23 Identities=43% Similarity=0.846 Sum_probs=18.0
Q ss_pred CCCcEEEEEEcCCCCCCCeEEEE
Q psy5866 73 EGRAIELVCSTSGGSPDPQISVT 95 (98)
Q Consensus 73 ~g~~~~l~C~~~~~~p~~~~~W~ 95 (98)
.+..+.|+|.+..+.+.+.++|+
T Consensus 14 ~~~~~~l~C~~~~~~~~~~~~W~ 36 (75)
T PF13927_consen 14 SGGSVTLTCSAEGGPPPPSISWY 36 (75)
T ss_dssp TTEEEEEEEEESSEESSEEEEEE
T ss_pred eceeEEEEEEEccccCCeEEEEE
Confidence 33349999999866558899998
No 222
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=96.31 E-value=0.0092 Score=28.51 Aligned_cols=24 Identities=33% Similarity=0.736 Sum_probs=19.7
Q ss_pred CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 73 EGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 73 ~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
+|+.+.|.|.+. +.|.+.+.|++.
T Consensus 1 ~g~~~~l~C~~~-~~~~~~v~W~~~ 24 (63)
T smart00408 1 EGQSVTLTCPAE-GDPVPNITWLKD 24 (63)
T ss_pred CCceEEEEeeCc-cCCCCeEEEEEC
Confidence 478899999964 678889999863
No 223
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=96.28 E-value=0.013 Score=30.80 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=18.0
Q ss_pred EEEEEccceeeccCeEEEEEEEECC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAG 40 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~ 40 (98)
..|.|.++ . |+|.|.|.|.|..
T Consensus 49 s~L~i~~~--~-d~g~Y~C~A~N~~ 70 (81)
T cd05749 49 SVLNVPGL--N-ETSKFSCEAHNAK 70 (81)
T ss_pred CEEEEccc--c-CCeEEEEEEEecc
Confidence 36888776 6 8999999999963
No 224
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=96.19 E-value=0.013 Score=31.34 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.6
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
.+..+..|+++.|.|.+. .|.+++.|.++
T Consensus 4 ~~~~v~~G~~v~L~C~~~--~~~~~i~W~~n 32 (87)
T cd05873 4 RQRTFKLGNNAELKCSPK--SNLARVVWKFD 32 (87)
T ss_pred ceEEEECCCCEEEEEECC--CCCCeEEEEEC
Confidence 346788999999999974 36789999876
No 225
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=96.18 E-value=0.013 Score=31.40 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=24.2
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTL 96 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~ 96 (98)
+...+.+|+++.|.|.+. +.+.+.+.|++
T Consensus 5 ~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~ 33 (95)
T cd05717 5 QDVTVVEGGTATLKCRVK-NNDNSSLQWSN 33 (95)
T ss_pred CcEEEcCCCCEEEEEEEC-CCCCceEEEeC
Confidence 456889999999999985 56788999974
No 226
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=96.16 E-value=0.013 Score=31.65 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=23.6
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTL 96 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~ 96 (98)
.+..+.+|+.+.|.|.+. |.|. .+.|++
T Consensus 8 ~~~~v~~G~~v~l~C~~~-G~P~-~v~W~k 35 (92)
T cd05866 8 SKVELSVGESKFFTCTAI-GEPE-SIDWYN 35 (92)
T ss_pred cceEEcCCCeEEEEEEEE-EeCC-eEEEEe
Confidence 446788999999999985 6887 899996
No 227
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.14 E-value=0.017 Score=31.62 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=24.6
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
....+.+|+++.|.|... +.+...+.|+++
T Consensus 6 ~~v~~~~G~~v~L~C~~~-~~~~~~v~W~k~ 35 (109)
T cd04983 6 QSLSVQEGENVTLNCNYS-TSTFYYLFWYRQ 35 (109)
T ss_pred CceEEcCCCCEEEEEEEC-CCCccEEEEEEE
Confidence 346788999999999986 447788999986
No 228
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.13 E-value=0.012 Score=31.92 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=21.8
Q ss_pred cCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866 72 TEGRAIELVCSTSGGSPDP-QISVTLQ 97 (98)
Q Consensus 72 ~~g~~~~l~C~~~~~~p~~-~~~W~~~ 97 (98)
.+|....|.|.+.+.+|.. .+.|+++
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~ 38 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKN 38 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEEC
Confidence 4577899999999888866 8999976
No 229
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.01 E-value=0.022 Score=31.72 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=24.0
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
....+.+|+++.|.|..........+.|++|
T Consensus 7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq 37 (116)
T cd07706 7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ 37 (116)
T ss_pred CceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence 3467889999999998754334567999987
No 230
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=95.96 E-value=0.018 Score=31.95 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=23.7
Q ss_pred CceecCCCcEEEEEEcCCC-CCCCeEEEEec
Q psy5866 68 NPVATEGRAIELVCSTSGG-SPDPQISVTLQ 97 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~ 97 (98)
...+.+|++++|.|..... .+.+.+.|++|
T Consensus 7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq 37 (116)
T cd04982 7 SITREESKSVTISCKVSGIDFSTTYIHWYRQ 37 (116)
T ss_pred eEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence 4577889999999997532 46778999986
No 231
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=95.89 E-value=0.069 Score=28.69 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=27.8
Q ss_pred CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
.+..+|.+.+++.. |+|..+|.+... .........+.|+
T Consensus 48 ~~~ktL~~~qv~~q-dSG~WtC~V~~~---~k~~~~~~~V~Vl 86 (88)
T cd07694 48 QDKKTLNLVQLGPN-DSGTWDCIVSVN---SSEKTLKLDIKVL 86 (88)
T ss_pred CCccEEEeceeCcc-cCCEEEEEEEEC---ceEEEEEeeEEEE
Confidence 36678999999999 999999999753 3333344444443
No 232
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=95.81 E-value=0.021 Score=31.06 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.5
Q ss_pred cEEEEEEcCCCCCCCeEEEEec
Q psy5866 76 AIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 76 ~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
...+.|.+.+|+|.+.++|+++
T Consensus 17 ~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 17 VTVATCVSANGKPPATISWETT 38 (95)
T ss_pred cEEEEEECCCCcCCCEEEEEeC
Confidence 3678999999999999999975
No 233
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=95.78 E-value=0.023 Score=30.42 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=22.3
Q ss_pred CceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866 68 NPVATEGRAIELVCSTSGGSPDPQISVTL 96 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~ 96 (98)
...+..|+.+.|.|.+. |.| +.+.|++
T Consensus 9 ~~~v~~G~~~~l~C~~~-G~p-~~i~W~~ 35 (92)
T cd04977 9 QGEISVGESKFFLCQVI-GEP-KDISWFS 35 (92)
T ss_pred cEEECCCCeEEEEEEeE-eeC-CeEEEEC
Confidence 46788999999999986 566 4899986
No 234
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=95.75 E-value=0.018 Score=31.31 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCCCCeEEEEec
Q psy5866 77 IELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 77 ~~l~C~~~~~~p~~~~~W~~~ 97 (98)
..+.|.+.+|+|++.++|+++
T Consensus 18 ~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 18 PVAKCVSANGRPPARISWSST 38 (95)
T ss_pred EEEEEEcCCCCCCcEEEEEcC
Confidence 678999999999999999975
No 235
>smart00409 IG Immunoglobulin.
Probab=95.75 E-value=0.033 Score=28.05 Aligned_cols=28 Identities=36% Similarity=0.663 Sum_probs=23.1
Q ss_pred ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 69 PVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
..+..|+.+.|.|.+.. .+.+.+.|+++
T Consensus 4 ~~~~~g~~~~l~C~~~~-~~~~~~~W~~~ 31 (86)
T smart00409 4 VTVKEGESVTLSCEVSG-SPPPEVTWYKQ 31 (86)
T ss_pred EEEeCCCeEEEEEEEcc-CCCCeEEEEEC
Confidence 46678999999999874 47889999875
No 236
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=95.75 E-value=0.033 Score=28.05 Aligned_cols=28 Identities=36% Similarity=0.663 Sum_probs=23.1
Q ss_pred ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 69 PVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
..+..|+.+.|.|.+.. .+.+.+.|+++
T Consensus 4 ~~~~~g~~~~l~C~~~~-~~~~~~~W~~~ 31 (86)
T smart00410 4 VTVKEGESVTLSCEVSG-SPPPEVTWYKQ 31 (86)
T ss_pred EEEeCCCeEEEEEEEcc-CCCCeEEEEEC
Confidence 46678999999999874 47889999875
No 237
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=95.67 E-value=0.015 Score=30.94 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=21.2
Q ss_pred cCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866 72 TEGRAIELVCSTSGGSP-DPQISVTLQ 97 (98)
Q Consensus 72 ~~g~~~~l~C~~~~~~p-~~~~~W~~~ 97 (98)
..|..+.|.|.+.+..| .+.++|+++
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~ 37 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKN 37 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEEC
Confidence 46788999999987667 468999975
No 238
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=95.54 E-value=0.038 Score=29.78 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=20.1
Q ss_pred eEEEEEccceeeccCeEEEEEEEE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~ 38 (98)
...+.|.+++.+ |+|.|.|....
T Consensus 54 ~a~f~I~~~~~~-~~G~Y~C~~~~ 76 (94)
T cd05711 54 QASFPLGPVTPA-HAGTYRCYGSY 76 (94)
T ss_pred EEEEEecCCCcc-cCEEEEEEEEC
Confidence 556899999999 99999999764
No 239
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.46 E-value=0.02 Score=31.30 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=21.6
Q ss_pred ecCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866 71 ATEGRAIELVCSTSGGSP-DPQISVTLQ 97 (98)
Q Consensus 71 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~ 97 (98)
...+..++|+|.+.+.+| ...+.|+++
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~ 41 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVD 41 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEEC
Confidence 335677899999998888 568999875
No 240
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=95.01 E-value=0.054 Score=29.05 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=20.1
Q ss_pred CCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866 74 GRAIELVCSTSGGSPDP-QISVTLQ 97 (98)
Q Consensus 74 g~~~~l~C~~~~~~p~~-~~~W~~~ 97 (98)
++.+.|.|.+.+.+|.. .+.|+++
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~ 38 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRD 38 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEEC
Confidence 67799999998777865 8999975
No 241
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.95 E-value=0.049 Score=29.94 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=20.5
Q ss_pred CCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866 73 EGRAIELVCSTSGGSPDP-QISVTLQ 97 (98)
Q Consensus 73 ~g~~~~l~C~~~~~~p~~-~~~W~~~ 97 (98)
.+..++|.|.+.+.+|.. .+.|+++
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~ 40 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQN 40 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEEC
Confidence 456799999999888865 6899875
No 242
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=94.79 E-value=0.096 Score=29.36 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCceecCCCcEEEEEEcCCCC-CCCeEEEEecC
Q psy5866 67 ANPVATEGRAIELVCSTSGGS-PDPQISVTLQV 98 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~ 98 (98)
....+.+|++++|.|...... -...+.|++|.
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~ 37 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQA 37 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEEC
Confidence 346788999999999864222 13569999873
No 243
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.72 E-value=0.066 Score=29.11 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=21.7
Q ss_pred eecCCCcEEEEEEcCCC-CC-CCeEEEEec
Q psy5866 70 VATEGRAIELVCSTSGG-SP-DPQISVTLQ 97 (98)
Q Consensus 70 ~~~~g~~~~l~C~~~~~-~p-~~~~~W~~~ 97 (98)
.+..++.+.|+|.+.+. +| ...++|+++
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~ 39 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRG 39 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEEC
Confidence 34457889999999987 56 457999985
No 244
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=94.53 E-value=0.059 Score=29.22 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=19.7
Q ss_pred CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866 73 EGRAIELVCSTSGGSPD-PQISVTLQ 97 (98)
Q Consensus 73 ~g~~~~l~C~~~~~~p~-~~~~W~~~ 97 (98)
.+...+|.|.+.+.+|. ..+.|.++
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~ 39 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKN 39 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEEC
Confidence 34557999999988885 57899875
No 245
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=94.34 E-value=0.058 Score=30.41 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=20.7
Q ss_pred CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866 73 EGRAIELVCSTSGGSPD-PQISVTLQ 97 (98)
Q Consensus 73 ~g~~~~l~C~~~~~~p~-~~~~W~~~ 97 (98)
++..+.|.|.+.+.+|. .++.|+++
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kn 42 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVN 42 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEEC
Confidence 45678999999988887 48999975
No 246
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=94.12 E-value=0.19 Score=26.99 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=20.4
Q ss_pred ceecCCCcEEEEEEcCCC-CCCCeEEEE
Q psy5866 69 PVATEGRAIELVCSTSGG-SPDPQISVT 95 (98)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~-~p~~~~~W~ 95 (98)
..+..|++++|+|....+ .|.+.+.|+
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~ 36 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWR 36 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEe
Confidence 466789999999998543 445589996
No 247
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=94.10 E-value=0.09 Score=28.47 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=20.3
Q ss_pred cCCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866 72 TEGRAIELVCSTSGGSPD-PQISVTLQ 97 (98)
Q Consensus 72 ~~g~~~~l~C~~~~~~p~-~~~~W~~~ 97 (98)
..|....|.|.+.+.+|. ..+.|+++
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~d 39 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKN 39 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEEC
Confidence 346667899999988885 47899975
No 248
>KOG3515|consensus
Probab=93.98 E-value=0.081 Score=38.60 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=29.8
Q ss_pred CCCCCEEeC-CCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866 57 PPQPPKISP-GANPVATEGRAIELVCSTSGGSPDPQISVTL 96 (98)
Q Consensus 57 ~~~~p~i~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~ 96 (98)
+|-.|.+.. .-+..+..|+.+.|.|.+.+++|.+.+.|+.
T Consensus 4 ~p~~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h 44 (741)
T KOG3515|consen 4 PPNVPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYH 44 (741)
T ss_pred CCCCccccCCCCChhhccCCcceeeeecCCCCCCcceEEEe
Confidence 455555421 1233788999999999999888888999985
No 249
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=93.79 E-value=0.043 Score=29.54 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=22.1
Q ss_pred ceecCCCcEEEEEEcCCCC----CCCeEEEEec
Q psy5866 69 PVATEGRAIELVCSTSGGS----PDPQISVTLQ 97 (98)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~----p~~~~~W~~~ 97 (98)
..+.+|....|.|....+. |.|.+.|+++
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~ 37 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKD 37 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeEC
Confidence 4567888899999865332 5789999986
No 250
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=93.77 E-value=0.24 Score=33.87 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=27.7
Q ss_pred CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
.++++.+.|++.+ |+|.|+|.+.... .......+.+.|
T Consensus 79 keYsf~~~Nvs~s-dEGrYrCIFYLn~--~EtyrH~I~vrV 116 (500)
T PHA02914 79 KEYSFIEENIGEH-EDGDFKCIFYLGD--NESHKHEILVRK 116 (500)
T ss_pred ceeEEEecCcccc-cCCcEEEEEEeCC--ceeEEEEEEEEE
Confidence 4688999999999 9999999998742 234444444444
No 251
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=93.76 E-value=0.12 Score=28.15 Aligned_cols=24 Identities=17% Similarity=0.039 Sum_probs=19.4
Q ss_pred CCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866 74 GRAIELVCSTSGGSPDP-QISVTLQ 97 (98)
Q Consensus 74 g~~~~l~C~~~~~~p~~-~~~W~~~ 97 (98)
+....|.|.+.+.+|.. .++|.++
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kn 40 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREG 40 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEEC
Confidence 45689999999888854 6899875
No 252
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=93.65 E-value=0.21 Score=27.14 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=22.3
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQISVTL 96 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~ 96 (98)
++..+.+|+++.|+|.+.. .....+.|++
T Consensus 5 ~nvtv~~G~ta~L~C~v~~-~~~~~v~w~~ 33 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKN-NDDSVIQLLN 33 (95)
T ss_pred CceEEcCCCcEEEEEEEcc-CCccEEEEEe
Confidence 4578899999999999864 4455677763
No 253
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=93.49 E-value=0.2 Score=27.86 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=21.7
Q ss_pred CCceecCCCcEEEEEEcCCCCC---CCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSP---DPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~ 97 (98)
....+.+|+.++|.|......+ ...+.|+++
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~ 39 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQ 39 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEe
Confidence 3457779999999998643222 246899865
No 254
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=93.45 E-value=0.19 Score=26.23 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=13.6
Q ss_pred EccceeeccCeEEEEEEEECCC
Q psy5866 20 ISNASFERDNGKFECRLKAAGS 41 (98)
Q Consensus 20 I~~v~~~~d~G~y~C~~~~~~~ 41 (98)
+.....+ +.+.|+|++.+.+.
T Consensus 49 ~~~~~~d-~g~~~~C~v~h~~l 69 (82)
T cd05761 49 FQVDRED-DGAPIICRVDHPAL 69 (82)
T ss_pred EEcchhh-CCCEEEEEEeChhc
Confidence 3333344 56799999988543
No 255
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.32 E-value=0.23 Score=26.91 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=19.8
Q ss_pred CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866 73 EGRAIELVCSTSGGSPD-PQISVTLQ 97 (98)
Q Consensus 73 ~g~~~~l~C~~~~~~p~-~~~~W~~~ 97 (98)
.+..+.|.|.+.+.+|. ..+.|+++
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~ 40 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSG 40 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeEC
Confidence 35568999999988885 47899875
No 256
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=93.28 E-value=0.17 Score=27.35 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=19.5
Q ss_pred CCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866 74 GRAIELVCSTSGGSPD-PQISVTLQ 97 (98)
Q Consensus 74 g~~~~l~C~~~~~~p~-~~~~W~~~ 97 (98)
...+.|.|.+.+.+|. ..+.|+++
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~d 38 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLVD 38 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEEC
Confidence 4558999999988886 67999875
No 257
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=93.19 E-value=0.24 Score=30.36 Aligned_cols=30 Identities=10% Similarity=0.167 Sum_probs=24.0
Q ss_pred CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
...+.+|+++.|.|.-..+...+.+.|.++
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~ 53 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKN 53 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEc
Confidence 357899999999999643555778999986
No 258
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=93.16 E-value=0.3 Score=27.59 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=21.9
Q ss_pred CceecCCCcEEEEEEcCCCCCC--CeEEEEecC
Q psy5866 68 NPVATEGRAIELVCSTSGGSPD--PQISVTLQV 98 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~~ 98 (98)
...+..|..++|+|.+.+..-. -.+.|+||.
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~ 39 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGA 39 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeC
Confidence 4567788889999998532222 367899983
No 259
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=93.14 E-value=0.17 Score=27.89 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=25.1
Q ss_pred CCceecCCCcEEEEEEcCCCCCCCe-EEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSPDPQ-ISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~ 97 (98)
....+.+|+.+.|.|... .+|+|. +.|.+.
T Consensus 11 ~~~~v~~gE~~~L~V~ie-AYP~p~~~~W~~~ 41 (101)
T cd05860 11 TTIFVNAGENLDLIVEYE-AYPKPEHQQWIYM 41 (101)
T ss_pred ceEEEECCCCEEEEEEEE-eCCCCeeeEEEcC
Confidence 346789999999999985 689997 999864
No 260
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=93.10 E-value=0.28 Score=25.74 Aligned_cols=34 Identities=9% Similarity=0.134 Sum_probs=19.0
Q ss_pred EEEccceeeccCeEEEEEEEECCCCCeeeEeeEEE
Q psy5866 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTV 52 (98)
Q Consensus 18 l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l 52 (98)
|.+.....+ |...|.|++.+.+......+....|
T Consensus 48 l~~~~~~~d-~g~~~tC~v~h~~l~~~~~~~~~~~ 81 (83)
T cd07705 48 VEFQVTRED-DGAEITCSVGHESLHDSDRSTSQRI 81 (83)
T ss_pred EEEEecchh-CCCEEEEEEECcccCCCCceeEEEe
Confidence 334344455 6679999999864333333333333
No 261
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=92.94 E-value=0.14 Score=27.29 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=23.0
Q ss_pred CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
...+.+|..+.|.|... .+.+.+.|+++
T Consensus 5 ~~tv~~g~~v~L~C~~~--s~~A~v~W~~n 32 (85)
T cd05872 5 NRTVAPGADVVLPCQLR--SNLASPVWLFN 32 (85)
T ss_pred EEEEecCCCEEEECCCC--CCCccEEEEEC
Confidence 45788999999999975 35679999876
No 262
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=92.82 E-value=0.2 Score=28.96 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=23.7
Q ss_pred CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
...|+++|.+...+. -.|.|+|.+... ....+..+.|.+
T Consensus 81 l~kG~aSL~~~~~~a--~~GnYTCeVt~~---~~ege~~i~Lk~ 119 (130)
T PF08204_consen 81 LLKGNASLKMDKSDA--VEGNYTCEVTEL---SREGETTIELKY 119 (130)
T ss_dssp GGGTB--EEEEHHHH--H-EEEEEEEEET---TEEEEEEEEEEE
T ss_pred hhCCCEEEEEcchhc--cccceEEEEEec---CCCceEEEEEEE
Confidence 346677898887544 479999999875 344444455544
No 263
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=92.67 E-value=0.29 Score=27.30 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=21.7
Q ss_pred CCceecCCCcEEEEEEcCCCCC---CCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGSP---DPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~ 97 (98)
....+.+|+++.|.|......+ ...+.|+++
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~ 39 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFR 39 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEE
Confidence 4567889999999998543222 246999754
No 264
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=91.90 E-value=0.33 Score=26.08 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=22.9
Q ss_pred CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
...+.+|+++.|.|..........+.|+++
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~ 39 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQ 39 (114)
T ss_dssp EEEEETTSEEEEEEEEESSSSGSEEEEEEE
T ss_pred eEEEecCCCEEEEEEEeCCCCcceEEEEEE
Confidence 457889999999999762234568999975
No 265
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=91.61 E-value=0.22 Score=25.98 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=21.0
Q ss_pred cCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866 72 TEGRAIELVCSTSGGSPDP-QISVTLQ 97 (98)
Q Consensus 72 ~~g~~~~l~C~~~~~~p~~-~~~W~~~ 97 (98)
..+..+.|.|.+.+.+|.. .+.|+++
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~ 32 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKN 32 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEET
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEec
Confidence 3478899999999888855 7999864
No 266
>PHA02982 hypothetical protein; Provisional
Probab=91.27 E-value=0.42 Score=29.95 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=25.5
Q ss_pred EEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
..+..+....+|+|.+++++ ..|-|+|++...
T Consensus 91 y~~sv~g~~STLTIkk~~i~-N~GCYtc~~ks~ 122 (251)
T PHA02982 91 YALSVSGNSSTFTMKKPDPQ-NLGCFTCEAKDA 122 (251)
T ss_pred EEEEEeccceeEEeccCCcc-cCCceEEEEecC
Confidence 33444455668999999999 999999999873
No 267
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=91.17 E-value=0.18 Score=26.62 Aligned_cols=21 Identities=14% Similarity=0.487 Sum_probs=17.5
Q ss_pred EEEccceeeccCeEEEEEEEEC
Q psy5866 18 LIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 18 l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
|.|...... |.|.|+|++.+.
T Consensus 64 l~v~~~~~~-~~~~y~C~v~h~ 84 (95)
T cd00098 64 LTVSPSDWN-SGDTYTCVVTHE 84 (95)
T ss_pred EEECHHHhC-CCCCEEEEEEeC
Confidence 567777777 999999999985
No 268
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=91.01 E-value=0.53 Score=26.31 Aligned_cols=31 Identities=16% Similarity=0.019 Sum_probs=21.7
Q ss_pred CCceecCCCcEEEEEEcCCCC-----CCCeEEEEec
Q psy5866 67 ANPVATEGRAIELVCSTSGGS-----PDPQISVTLQ 97 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~-----p~~~~~W~~~ 97 (98)
....+.+|+.+.|.|.-.... ....+.|++|
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq 42 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKG 42 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeC
Confidence 346788999999999753221 1245899987
No 269
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=89.62 E-value=0.88 Score=24.98 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=20.8
Q ss_pred ecCCCcEEEEEEcCCCC-CC-CeEEEEec
Q psy5866 71 ATEGRAIELVCSTSGGS-PD-PQISVTLQ 97 (98)
Q Consensus 71 ~~~g~~~~l~C~~~~~~-p~-~~~~W~~~ 97 (98)
...+..++|+|.+.+.+ |. ..+.|.++
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~ 44 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPS 44 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEEC
Confidence 33567799999998877 74 57999875
No 270
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=88.44 E-value=1.5 Score=24.20 Aligned_cols=28 Identities=14% Similarity=0.067 Sum_probs=20.7
Q ss_pred ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 69 PVATEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
..+.+|+++.|.|.-. ......++|+|.
T Consensus 8 ~~~~~G~~V~L~v~~~-p~~~~~~~W~kg 35 (105)
T cd05774 8 PQVAEGENVLLLVHNL-PENLLAYAWYKG 35 (105)
T ss_pred CcccCCCCEEEEecCC-CCCceEEEEEcC
Confidence 4677899999999753 233448999974
No 271
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=87.96 E-value=2.2 Score=22.55 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=21.8
Q ss_pred EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
+|++ ..+.+||...|.|++.+.+-. .......|.|+
T Consensus 45 ~L~~-~p~~eDdG~~~~C~a~~~~l~--~~~~~~~L~V~ 80 (82)
T cd05883 45 QLML-KVTKEDDGVPVICLVDHPAVK--DLQTQRYLEVQ 80 (82)
T ss_pred EEEE-ECchhhCCCEEEEEEcCcccC--CceeeEEEEEE
Confidence 3455 455552555999999986432 24555666665
No 272
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=87.67 E-value=1.2 Score=24.36 Aligned_cols=21 Identities=14% Similarity=0.417 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCCCCeEEEEec
Q psy5866 77 IELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 77 ~~l~C~~~~~~p~~~~~W~~~ 97 (98)
+-..|.+.+|+|++.++|.-.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~ 43 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTR 43 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEcc
Confidence 457899889999999999743
No 273
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=85.46 E-value=4.7 Score=27.92 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=26.3
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
..+|+|.++..+ ..|-|+|++... .......-.|.|
T Consensus 345 ~STLTIkka~I~-N~GCY~~~a~~g---~~~~ec~~Cl~V 380 (500)
T PHA02914 345 NSTLTIKKAHIN-NAGCYEAQAFMG---KFKEECRHCFKV 380 (500)
T ss_pred hceEEeeeEEEE-cCCceEEEEecC---cchhhhhhheEe
Confidence 347999999999 999999999873 344444444444
No 274
>PHA03283 envelope glycoprotein E; Provisional
Probab=85.16 E-value=12 Score=26.85 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=46.0
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCC-----CEE--------------eCCCCceecCCCc
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP-----PKI--------------SPGANPVATEGRA 76 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~-----p~i--------------~~~~~~~~~~g~~ 76 (98)
-.|.|.+++.+ ++|.|+-...+. .......+.++|..++.. |.. ..=.+....+|++
T Consensus 134 ~~l~I~~at~~-~aGVYtly~r~d---~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDt 209 (542)
T PHA03283 134 SVLQIQRATPN-IAGVYTLHVSSD---GMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDS 209 (542)
T ss_pred CeeEEEecccc-cCeEEEEEecCC---CceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCc
Confidence 45999999999 999999988864 234444455666541111 110 1112345778888
Q ss_pred EEEEEEcCCCC----CCCeEEEEe
Q psy5866 77 IELVCSTSGGS----PDPQISVTL 96 (98)
Q Consensus 77 ~~l~C~~~~~~----p~~~~~W~~ 96 (98)
+.++-...... -...+.|+.
T Consensus 210 f~lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 210 FDLSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred eeEeEEEeeccCCCCceEEEEEEE
Confidence 87765543222 135688874
No 275
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=84.24 E-value=4.5 Score=24.29 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=22.0
Q ss_pred CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 13 SGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
+...-|+|++-+++ |+|.|.-++.-.
T Consensus 121 ~~~~lL~i~~p~~~-dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 121 ENGVLLRIRNPRPE-DSGIYYLRVWLD 146 (161)
T ss_pred CcceEEEeCCCCcc-cceEEEEEEEEC
Confidence 33456999999999 999999999875
No 276
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=83.50 E-value=2.5 Score=22.14 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=13.6
Q ss_pred EEEccceeeccCeEEEEEEEECC
Q psy5866 18 LIISNASFERDNGKFECRLKAAG 40 (98)
Q Consensus 18 l~I~~v~~~~d~G~y~C~~~~~~ 40 (98)
|.+..-... +...|.|++.+.+
T Consensus 48 L~~~~~~~d-~g~~ytC~v~h~~ 69 (83)
T cd05884 48 LDFRVDRSD-DGVAIICRVDHES 69 (83)
T ss_pred EEEEccccc-CCCEEEEEEechh
Confidence 344433344 5569999998853
No 277
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=82.61 E-value=1.9 Score=22.09 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=16.8
Q ss_pred EEEEEccceeeccCeEEEEEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~ 38 (98)
-+|.|..+..+ ..|.|.|.+.+
T Consensus 33 ~tlnLGs~~~D-PRG~Y~C~~s~ 54 (69)
T cd07691 33 TLLDLGSRIND-PRGTYSCKESE 54 (69)
T ss_pred cEEeccCcccC-CCcceEecCcc
Confidence 45667777777 89999998754
No 278
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=81.29 E-value=4.7 Score=22.62 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=21.3
Q ss_pred CCceecCCCcEEEEEEcCCCC---CCCeEEEEe
Q psy5866 67 ANPVATEGRAIELVCSTSGGS---PDPQISVTL 96 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~---p~~~~~W~~ 96 (98)
....+..|+.+.|.|...... +...+.|..
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~ 38 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHY 38 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence 446788899999999975322 345799943
No 279
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=80.88 E-value=1.7 Score=28.11 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=20.5
Q ss_pred EEEEEccceeeccCeEEEEEEEECC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAG 40 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~ 40 (98)
..|.+.+...+ ++|.|+|...-..
T Consensus 37 G~L~~~~F~es-mSG~YTCtLsYk~ 60 (271)
T PF07354_consen 37 GKLMFKNFQES-MSGSYTCTLSYKP 60 (271)
T ss_pred ceEEeeccccc-cCCceEEEEEEEe
Confidence 35999999999 9999999987653
No 280
>KOG1480|consensus
Probab=80.80 E-value=0.71 Score=34.16 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=21.1
Q ss_pred eEEEEEccceeeccCeEEEEEEEEC
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
...+.|..+... |.|.|+|++.+-
T Consensus 182 d~~li~~~arls-d~~nytc~a~ni 205 (909)
T KOG1480|consen 182 DHNLIISQARLS-DSGNYTCEATNI 205 (909)
T ss_pred cCCccccchhhh-hcccceeeeehh
Confidence 446889999999 999999999884
No 281
>PHA03290 envelope glycoprotein I; Provisional
Probab=78.21 E-value=8.7 Score=25.88 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 13 SGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
....-|+|++-+++ |+|.|.-++.-.
T Consensus 126 e~~vLL~I~~P~~~-DSGiY~LRV~Ld 151 (357)
T PHA03290 126 DAEIIFKINKPGIE-DAGIYLLLVQLD 151 (357)
T ss_pred CcceEEEeCCCCcc-cCeeEEEEEEeC
Confidence 33456999999999 999999999875
No 282
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=76.56 E-value=5.1 Score=20.30 Aligned_cols=21 Identities=19% Similarity=0.610 Sum_probs=14.4
Q ss_pred EEEccceeeccCeEEEEEEEEC
Q psy5866 18 LIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 18 l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
|.|.....+ +...|+|.+...
T Consensus 50 L~v~~~~~~-~~~~~tC~V~H~ 70 (75)
T smart00407 50 LTVSASTWE-SGDTYTCQVTHE 70 (75)
T ss_pred EEEccccCC-CCCEEEEEEEEc
Confidence 344444556 777999999874
No 283
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=71.20 E-value=7.1 Score=26.32 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=18.7
Q ss_pred cEEEEEEcCCCCCCC-eEEEEec
Q psy5866 76 AIELVCSTSGGSPDP-QISVTLQ 97 (98)
Q Consensus 76 ~~~l~C~~~~~~p~~-~~~W~~~ 97 (98)
.+.|+|.|.+.+|.. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 579999999999954 7899876
No 284
>PHA03286 envelope glycoprotein E; Provisional
Probab=71.17 E-value=34 Score=24.24 Aligned_cols=78 Identities=15% Similarity=0.120 Sum_probs=47.2
Q ss_pred EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC----CCCCE-------------EeCCCCceecCCCcEE
Q psy5866 16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP----PQPPK-------------ISPGANPVATEGRAIE 78 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~----~~~p~-------------i~~~~~~~~~~g~~~~ 78 (98)
-.|.|.+++.+ ++|+|+-...+.. .......+.+.|... +.++. +..-.+.....|+++.
T Consensus 127 ~~L~I~nAt~q-naGiYtly~rnd~--~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~ 203 (492)
T PHA03286 127 KELTILNASSQ-NAGIYIRYSRNGT--RTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVD 203 (492)
T ss_pred CceEEeecccc-ccceEEEEEcCCC--CcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEE
Confidence 35999999999 9999999887641 244555556666311 11111 1111345677889887
Q ss_pred EEEEcC----CCCCCCeEEEEe
Q psy5866 79 LVCSTS----GGSPDPQISVTL 96 (98)
Q Consensus 79 l~C~~~----~~~p~~~~~W~~ 96 (98)
++-... .+.-...+.|+.
T Consensus 204 vSv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 204 ASVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEEEeecccCCCceEEEEEEE
Confidence 666543 122245788874
No 285
>PHA03292 envelope glycoprotein I; Provisional
Probab=70.55 E-value=14 Score=25.36 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.3
Q ss_pred eEEEEEccceeeccCeEEEEEEEEC
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
..-|+|++-+++ |+|.|.-++.-.
T Consensus 127 ~vLL~I~~P~~~-DSGiY~LRV~Ld 150 (413)
T PHA03292 127 NVLLNITGPQPA-DSGAYILRVKLD 150 (413)
T ss_pred ceEEEeCCCCcc-cceeEEEEEEeC
Confidence 356999999999 999999999875
No 286
>PHA03289 envelope glycoprotein I; Provisional
Probab=68.50 E-value=16 Score=24.61 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.3
Q ss_pred eEEEEEccceeeccCeEEEEEEEEC
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
..-|+|++-+++ |+|.|.-++.-.
T Consensus 121 gvLL~I~~Pr~~-DSGiYyLRV~Ld 144 (352)
T PHA03289 121 GLLLTIIEPRMS-DTGIYYIRVSLA 144 (352)
T ss_pred ceEEEeCCCCcc-cCeeEEEEEEeC
Confidence 446899999999 999999999875
No 287
>PHA03042 CD47-like protein; Provisional
Probab=68.48 E-value=27 Score=22.97 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=15.2
Q ss_pred eEEEEEccceeeccCeEEEEEEEEC
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
..+|+..... . -.|.|+|++...
T Consensus 70 ~aSL~~~f~~-~-l~GNYTCEv~~l 92 (286)
T PHA03042 70 TSSLKFNFSK-N-LSGNYTCEAINK 92 (286)
T ss_pred ceEEEEeccc-c-CCCceeEEEeec
Confidence 3456554432 2 479999999875
No 288
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=65.42 E-value=7.4 Score=19.72 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=13.5
Q ss_pred cCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866 72 TEGRAIELVCSTSGGSPDPQISVTLQ 97 (98)
Q Consensus 72 ~~g~~~~l~C~~~~~~p~~~~~W~~~ 97 (98)
..|..++|+|.... ..+.|.++
T Consensus 5 isGTtVtlTCP~~~----~~i~W~~n 26 (65)
T cd07692 5 ISGTTVTVTCPLSG----DDIKWKKN 26 (65)
T ss_pred EeccEEEEECCCCC----CCceEEeC
Confidence 45777888886432 12777654
No 289
>PHA03052 Hypothetical protein; Provisional
Probab=64.42 E-value=17 Score=18.64 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=20.2
Q ss_pred CceecCCCcEEEEEEcCCCCCC--CeEEEEe
Q psy5866 68 NPVATEGRAIELVCSTSGGSPD--PQISVTL 96 (98)
Q Consensus 68 ~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~ 96 (98)
...+..|..+++.|.+.-|.|. +.+.|..
T Consensus 6 ~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~ 36 (69)
T PHA03052 6 GIVTSLGSNLTITCKVSLRPPTTDADVFWIS 36 (69)
T ss_pred cEEEEccCCceEeEEEEecCCCcceEEEEEe
Confidence 3566788999999998755553 3466653
No 290
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=64.09 E-value=20 Score=18.82 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=15.3
Q ss_pred EEEccceeeccCeEEEEEEEE
Q psy5866 18 LIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 18 l~I~~v~~~~d~G~y~C~~~~ 38 (98)
+........ |+|...|.|..
T Consensus 45 ~~~~~~~~~-d~G~w~C~a~~ 64 (80)
T PF05790_consen 45 VSTFTPTTE-DSGTWVCTASD 64 (80)
T ss_dssp EEEESBTCG-GSEEEEEEEEE
T ss_pred EEEecCCCC-CCEEEEEEEcC
Confidence 345566678 99999999953
No 291
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=60.80 E-value=21 Score=20.23 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=14.4
Q ss_pred EEEEEccceeeccCeEEEEEEE
Q psy5866 16 YDLIISNASFERDNGKFECRLK 37 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~ 37 (98)
.+|.|..-+.+ |+|+|.-...
T Consensus 103 LsL~Il~SrkE-~EGWYfmtlE 123 (126)
T PF06214_consen 103 LSLEILESRKE-DEGWYFMTLE 123 (126)
T ss_dssp TEEEETT--GG-G-EEEEEEEE
T ss_pred ceeehhccccc-cCceEEEEee
Confidence 46899999999 9999976554
No 292
>PHA03282 envelope glycoprotein E; Provisional
Probab=60.46 E-value=21 Score=25.38 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=25.3
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v 54 (98)
+.+|.|.+++.+ |+|.|.-.+..... ...+...+.|.|
T Consensus 123 n~tl~l~~a~~~-DsG~Y~L~~~~~~~-~~~~~~~v~l~V 160 (540)
T PHA03282 123 NGTLVLREARET-DSGMYVLSVSRAPN-STAARAVVFLVV 160 (540)
T ss_pred cceEEEeecccc-CCceEEEEecCCCC-chhheEEEEEEe
Confidence 446999999999 99999988654211 122344455555
No 293
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=56.98 E-value=32 Score=21.10 Aligned_cols=31 Identities=23% Similarity=0.613 Sum_probs=23.6
Q ss_pred CCCCeEEEEEccceeeccCeEEEEEEEECCCC
Q psy5866 11 PDSGRYDLIISNASFERDNGKFECRLKAAGSG 42 (98)
Q Consensus 11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~ 42 (98)
...+...+++..|.-+ =+|.|+|.......+
T Consensus 88 ~~gG~i~mt~hQVN~D-GaGP~~C~iD~tg~g 118 (184)
T PF11327_consen 88 TAGGSISMTIHQVNAD-GAGPFTCDIDETGTG 118 (184)
T ss_pred cCCCEEEEEEEEecCC-CCcCeEEEECCCCCc
Confidence 3466778888888876 699999999775443
No 294
>PHA03291 envelope glycoprotein I; Provisional
Probab=55.89 E-value=50 Score=22.68 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=21.7
Q ss_pred CeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 14 GRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 14 ~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
...-|+|.+...+ |+|.|.-++...
T Consensus 127 ~~vLL~i~~P~~~-DsGiYvLRV~vd 151 (401)
T PHA03291 127 RQPLLRARGAARA-VVGLYVLRVWVE 151 (401)
T ss_pred cceEEEecCCCcc-cceeEEEEEEeC
Confidence 3456899999999 999999999875
No 295
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=50.80 E-value=53 Score=19.64 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=28.2
Q ss_pred EeCCCCeEEEEEccceeeccCeEEEEEEEECC--CCCeeeEeeEEEEEE
Q psy5866 9 YRPDSGRYDLIISNASFERDNGKFECRLKAAG--SGQDLHSQVYTVTVL 55 (98)
Q Consensus 9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~--~~~~~~~~~~~l~v~ 55 (98)
.+..+|.+...|.+-.+. ..|.|.|.+.... .+.......+.+.|.
T Consensus 77 ~d~~~G~i~y~lp~~~l~-~~G~v~a~~~i~~~~~~~~~~t~~F~F~V~ 124 (170)
T PF10651_consen 77 VDPTNGIIQYTLPDEFLK-HVGKVKAQLFIYYNGDGQSISTANFTFEVE 124 (170)
T ss_dssp EETTTTEEEEE--TTTTH-SSEEEEEEEEEEEESSSEEEE---EEEEEE
T ss_pred EcCcCcEEEEEECHHHhc-cCcEEEEEEEEEECCCCCEEEEeeEEEEEe
Confidence 356788888999888888 8999999876543 223334444555554
No 296
>PHA03282 envelope glycoprotein E; Provisional
Probab=50.40 E-value=56 Score=23.41 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.3
Q ss_pred CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 13 SGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
.+..+|.+.|+..+ ++|.|-|.+..+
T Consensus 330 ~n~VdL~F~nAp~s-aSGLYVfVl~yN 355 (540)
T PHA03282 330 GHTVNLQLRDASEA-SGGLYVCVVYVN 355 (540)
T ss_pred CCccceEecCCCcc-cCceEEEEEEEC
Confidence 44558999999999 999999998874
No 297
>COG5475 Uncharacterized small protein [Function unknown]
Probab=50.36 E-value=26 Score=17.21 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=14.9
Q ss_pred EEEEEccceeeccCeEEEEEEEEC
Q psy5866 16 YDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 16 ~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
-..+|+..+.+ |.|+|+-.+.
T Consensus 18 P~Mtvs~~ss~---Gmy~C~Wf~g 38 (60)
T COG5475 18 PRMTVSGYSSD---GMYECRWFDG 38 (60)
T ss_pred ceEEEeccccC---CeEEEEEecC
Confidence 34677776543 9999998764
No 298
>KOG4597|consensus
Probab=49.28 E-value=24 Score=25.19 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=28.0
Q ss_pred eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
-..|.|-+.... |+|+|.|.+.+- .......+.+.+.
T Consensus 256 tcql~ic~ewq~-~a~w~tCs~rcg---~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 256 TCQLVICNEWQA-DAGWYTCSARCG---AGFLRRDVPCSSV 292 (560)
T ss_pred eeeEEEcchhhc-CCCceeeccccc---cceeeccceeeee
Confidence 456888899999 999999999883 5555556666553
No 299
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=48.94 E-value=58 Score=19.59 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=18.6
Q ss_pred eccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 26 ERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 26 ~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
++|.+.|.|.+....+........+.+.|.
T Consensus 69 s~d~~~~sC~I~RPqgkSYL~F~qFkaev~ 98 (158)
T PF10572_consen 69 SDDNGHYSCIIWRPQGKSYLFFTQFKAEVK 98 (158)
T ss_pred cCCCCceEEEEECCCCCcEEEEEEEEEEEe
Confidence 337889999988754333444445555554
No 300
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=43.48 E-value=53 Score=23.12 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=19.1
Q ss_pred CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 13 SGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
.+...|++.|+..+ ++|.|-|.+..+
T Consensus 266 ~~~~~l~f~~a~~~-~sGLYv~V~~~n 291 (439)
T PF02480_consen 266 SNGVDLQFTNAPES-ASGLYVFVVYYN 291 (439)
T ss_dssp TTSSSEEESS--GG-G-EEEEEEEEET
T ss_pred CCCcceEecCCCcc-cCceEEEEEEEC
Confidence 34456999999999 999999999874
No 301
>PHA03112 IL-18 binding protein; Provisional
Probab=41.29 E-value=65 Score=19.03 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=18.8
Q ss_pred ecCCCcEEEEEEcCCCCCC-CeEEEEe
Q psy5866 71 ATEGRAIELVCSTSGGSPD-PQISVTL 96 (98)
Q Consensus 71 ~~~g~~~~l~C~~~~~~p~-~~~~W~~ 96 (98)
..+++.+.|+|.+....|. .-+.|+.
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~ 61 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLI 61 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEc
Confidence 4458889999998744454 5678984
No 302
>PHA03240 envelope glycoprotein M; Provisional
Probab=38.60 E-value=15 Score=23.26 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=16.0
Q ss_pred eEEEEEccceeeccCeEEEE
Q psy5866 15 RYDLIISNASFERDNGKFEC 34 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C 34 (98)
+.+|.|.++..+ |+|+|.-
T Consensus 104 NstL~i~~vn~s-d~~nYcr 122 (258)
T PHA03240 104 NSTLIIAHLNLS-DAGEYCR 122 (258)
T ss_pred cceEEEEEEeec-Ccchhhh
Confidence 457999999999 9999743
No 303
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=38.34 E-value=66 Score=17.18 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=19.2
Q ss_pred CCceecCCCcEEEEEEcCCCCC----CCeEEEEe
Q psy5866 67 ANPVATEGRAIELVCSTSGGSP----DPQISVTL 96 (98)
Q Consensus 67 ~~~~~~~g~~~~l~C~~~~~~p----~~~~~W~~ 96 (98)
+...+..|.+++.+|....+.. +..+.|..
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkl 44 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKL 44 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEEC
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEE
Confidence 3456778999999999765433 34577764
No 304
>PHA03286 envelope glycoprotein E; Provisional
Probab=37.21 E-value=1.1e+02 Score=21.94 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=19.8
Q ss_pred EEEEccceeeccCeEEEEEEEEC
Q psy5866 17 DLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
+|++.|+..+ ++|.|-|.+.-.
T Consensus 308 nL~f~nA~~s-~SGLYVfVl~yN 329 (492)
T PHA03286 308 SFRLANAQPT-DAGLYVVVALYN 329 (492)
T ss_pred ceeecCCCcc-cCceEEEEEEEC
Confidence 4899999999 999999998874
No 305
>PF01082 Cu2_monooxygen: Copper type II ascorbate-dependent monooxygenase, N-terminal domain; InterPro: IPR000323 Copper type II, ascorbate-dependent monooxygenases [] are a class of enzymes that requires copper as a cofactor and which uses ascorbate as an electron donor. This family contains two related enzymes, Dopamine-beta-monooxygenase (1.14.17.1 from EC) and Peptidyl-glycine alpha-amidating monooxygenase (1.14.17.3 from EC). There are a few regions of sequence similarities between these two enzymes, two of these regions contain clusters of conserved histidine residues which are most probably involved in binding copper.; GO: 0004497 monooxygenase activity, 0005507 copper ion binding, 0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=33.10 E-value=76 Score=18.15 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=15.9
Q ss_pred eEEEEEccc-eeeccCeEEEEEEEEC
Q psy5866 15 RYDLIISNA-SFERDNGKFECRLKAA 39 (98)
Q Consensus 15 ~~~l~I~~v-~~~~d~G~y~C~~~~~ 39 (98)
.+.|+..++ -+. +...|.|.+...
T Consensus 3 ~~dl~~~~v~vP~-~~t~Y~C~~~~l 27 (132)
T PF01082_consen 3 TFDLLMPNVTVPS-QDTTYWCFVFKL 27 (132)
T ss_dssp -EEEE-SSB---S-SSSEEEEEEEE-
T ss_pred eEEEEcCCcCcCC-CCCeEEEEEEEC
Confidence 466888889 555 778999998874
No 306
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.70 E-value=3.8e+02 Score=24.24 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=44.9
Q ss_pred ceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866 23 ASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL 96 (98)
Q Consensus 23 v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~ 96 (98)
.... +.|.|.-.+...+. .........+.|..+.....+.. ....+..|+.+.+++....|. ..++.|-.
T Consensus 1834 ~Tf~-~aG~ytV~L~AsN~-vs~~~~s~~~~VQe~I~~L~L~a-s~~~~~~n~~v~fsa~l~~GS-~Vtf~w~f 1903 (2740)
T TIGR00864 1834 MTFP-DAGTFAIRLNASNA-VSGKSASREFFAEEPIFGLELKA-SKKIAAIGEKVEFQILLAAGS-AVNFRLQI 1903 (2740)
T ss_pred EecC-CCeEEEEEEEEEcc-cCcceeeeeEEEEEecceEEEec-ccccccCCCEEEEEEEecCCC-ceEEEEEe
Confidence 4677 89999887654322 23444556677776655444432 334677889999999876544 67777753
No 307
>PHA03189 UL14 tegument protein; Provisional
Probab=31.28 E-value=1.7e+02 Score=19.87 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=13.8
Q ss_pred cceeeccCeEEEEEEEEC
Q psy5866 22 NASFERDNGKFECRLKAA 39 (98)
Q Consensus 22 ~v~~~~d~G~y~C~~~~~ 39 (98)
++.-+ .+|.|+|...|.
T Consensus 139 ~v~t~-taG~Y~CvLrN~ 155 (348)
T PHA03189 139 RVSTS-TAGMYECVLRNE 155 (348)
T ss_pred EEEec-ccceEEEEeccc
Confidence 55666 899999999885
No 308
>PHA03283 envelope glycoprotein E; Provisional
Probab=30.32 E-value=64 Score=23.37 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.1
Q ss_pred CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866 13 SGRYDLIISNASFERDNGKFECRLKAA 39 (98)
Q Consensus 13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~ 39 (98)
.+...|.+.|+..+ ++|.|-|.+...
T Consensus 312 ~~~v~L~f~nap~~-~SGLYVfVv~yN 337 (542)
T PHA03283 312 QNRVDLLFKNAPAS-ASGLYVFVLLYN 337 (542)
T ss_pred CCCcceEeccCCcc-cCceEEEEEEEC
Confidence 34467999999999 999999998874
No 309
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=28.27 E-value=35 Score=14.95 Aligned_cols=10 Identities=30% Similarity=0.969 Sum_probs=7.7
Q ss_pred eeccCeEEEEE
Q psy5866 25 FERDNGKFECR 35 (98)
Q Consensus 25 ~~~d~G~y~C~ 35 (98)
.. ++|.|.|.
T Consensus 20 ~~-~dG~~yC~ 29 (36)
T PF11781_consen 20 YS-DDGFYYCD 29 (36)
T ss_pred Ec-cCCEEEhh
Confidence 44 88999994
No 310
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=25.83 E-value=42 Score=20.50 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=10.8
Q ss_pred cceeeccCeEEEEEE
Q psy5866 22 NASFERDNGKFECRL 36 (98)
Q Consensus 22 ~v~~~~d~G~y~C~~ 36 (98)
.+..++|+|.|-|-.
T Consensus 130 ~~~~S~dAG~YlCn~ 144 (194)
T cd00501 130 PARVSNDAGTYLCNH 144 (194)
T ss_pred CceEcCCCCceeeHH
Confidence 345565999999943
No 311
>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1. This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].
Probab=24.09 E-value=1.9e+02 Score=18.13 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=21.0
Q ss_pred ceeEEEEeCCCCeEEEEEcccee-eccCeEEEEEEEE
Q psy5866 3 KVEIIDYRPDSGRYDLIISNASF-ERDNGKFECRLKA 38 (98)
Q Consensus 3 ~~~~~~~~~~~~~~~l~I~~v~~-~~d~G~y~C~~~~ 38 (98)
.|...++..++.++.|+|....- . ..|.|+..+.-
T Consensus 153 eGw~q~l~~d~ikYrLhI~AkDg~G-~~~~YeAvV~~ 188 (202)
T PF07430_consen 153 EGWYQDLGNDGIKYRLHIVAKDGLG-RLGNYEAVVWE 188 (202)
T ss_pred eEEEEeccCCCceEEEEEEeecCCC-CcCceEEEEEE
Confidence 34445555555667777776654 4 55777765544
No 312
>KOG0200|consensus
Probab=23.41 E-value=87 Score=22.88 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.0
Q ss_pred eEEEEEccceeeccCeEEEEEEEE
Q psy5866 15 RYDLIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 15 ~~~l~I~~v~~~~d~G~y~C~~~~ 38 (98)
.+.+.+..+..+ |.|.|+|.+.+
T Consensus 12 ~~~~~~~~~~~~-~~~~y~~~~~~ 34 (609)
T KOG0200|consen 12 HWFLIIDSVVPG-DKGFYTCLVSN 34 (609)
T ss_pred cceEEEEEEEec-CCccEEEEEec
Confidence 456888889999 99999999987
No 313
>COG3536 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.91 E-value=97 Score=17.58 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=10.2
Q ss_pred EEEEccceeeccCeEEEEEEEE
Q psy5866 17 DLIISNASFERDNGKFECRLKA 38 (98)
Q Consensus 17 ~l~I~~v~~~~d~G~y~C~~~~ 38 (98)
...|..+.+. |.|-.+...
T Consensus 59 ~V~i~~i~p~---GnYavri~F 77 (120)
T COG3536 59 NVQIRDIEPV---GNYAVRILF 77 (120)
T ss_pred cceEEEeEec---CceEEEEEe
Confidence 3555555444 666655554
No 314
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=21.29 E-value=41 Score=21.09 Aligned_cols=15 Identities=20% Similarity=0.487 Sum_probs=10.7
Q ss_pred cceeeccCeEEEEEE
Q psy5866 22 NASFERDNGKFECRL 36 (98)
Q Consensus 22 ~v~~~~d~G~y~C~~ 36 (98)
.+..++|+|.|-|-.
T Consensus 130 p~~~S~dAG~ylCN~ 144 (208)
T PRK13194 130 PAVLSYSAGTYLCNY 144 (208)
T ss_pred CcEEeCCCccchhHH
Confidence 345555999999943
No 315
>PF12539 Csm1: Chromosome segregation protein Csm1/Pcs1; InterPro: IPR020981 Saccharomyces cerevisiae Csm1 is part of the monopolin complex. Csm1 forms a complex with Mde4 and promotes monoorientation during meiosis []. It plays a mitotic role in DNA replication [] and is required for condensin recruitment to the replication fork barrier site and rDNA repeat segregation []. This entry also contains the Schizosaccharomyces pombe homologue to Csm1, Pcs1. Pcs1 forms a complex with Mde4 and acts in the central kinetochore domain to clamp microtubule binding sites together[]. The two complexes (Csm1/Lrs4 and Pcs1/Mde4) contribute to the prevention of merotelic attachment [].; GO: 0005515 protein binding; PDB: 3N4S_C 3N4R_B 3N7N_A 3N4X_B.
Probab=21.25 E-value=1.6e+02 Score=15.99 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=20.7
Q ss_pred EEEccceeeccCe-EEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866 18 LIISNASFERDNG-KFECRLKAAGSGQDLHSQVYTVTVL 55 (98)
Q Consensus 18 l~I~~v~~~~d~G-~y~C~~~~~~~~~~~~~~~~~l~v~ 55 (98)
|+|.++... ++| .|-|.....+ + .-.++|.+.
T Consensus 14 l~V~~~~ed-~~~~~FDc~Qtg~n---G--tl~ykL~i~ 46 (90)
T PF12539_consen 14 LIVRNVKED-DSGLWFDCIQTGRN---G--TLHYKLGID 46 (90)
T ss_dssp EEEEEEEEE-SSCEEEEEEEE---------EEEEEEEEE
T ss_pred eEEEEEEEC-CCCcEEEEEEcCCC---c--EEEEEEEec
Confidence 788999888 877 8899887642 2 344555553
Done!