RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5866
(98 letters)
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 60.6 bits (146), Expect = 7e-13
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANP--V 70
+ L+++ A D + C ++A +G + V P+ ++SP V
Sbjct: 74 DSQGRLVLAEAQVG-DERDYVCVVRAGAAGTA--EATARLNVFAKPEATEVSPNKGTLSV 130
Query: 71 ATEGRAIELVCSTSGGSPDPQIS 93
+ C++ G+P P+I+
Sbjct: 131 MEDSAQEIATCNSRNGNPAPKIT 153
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 61.3 bits (148), Expect = 8e-13
Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 3 KVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPK 62
+ + L + E D G + C G S + VL PQ
Sbjct: 66 EFVAARLGAELRNASLRMFGLRVE-DEGNYTCLFVTFPQGSR--SVDIWLRVLAKPQNTA 122
Query: 63 ISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
T C ++GG P QI+
Sbjct: 123 EVQ--KVQLTGEPVPMARCVSTGGRPPAQIT 151
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 58.6 bits (141), Expect = 4e-12
Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 5/92 (5%)
Query: 2 DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
+ + L + E D G + C G S + VL PQ
Sbjct: 64 LEFVAARLGAELRDASLRMFGLRVE-DEGSYTCLFVTFPQGS--RSVDIWLRVLAKPQNT 120
Query: 62 KISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
T C ++GG P QI+
Sbjct: 121 AEVQ--KVQLTGEPVPMARCVSTGGRPPAQIT 150
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 55.9 bits (134), Expect = 6e-11
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANP 69
RP + +S E D G + C +G +TV+ P A
Sbjct: 86 RPSFTDGTIRLSRLELE-DEGVYICEFATFPTGN--RESQLNLTVMAKPTNWIEGTQAVL 142
Query: 70 VA---TEGRAIELVCSTSGGSPDPQIS 93
A + + + C+++ G P +S
Sbjct: 143 RAKKGQDDKVLVATCTSANGKPPSVVS 169
Score = 31.3 bits (70), Expect = 0.031
Identities = 10/76 (13%), Positives = 19/76 (25%), Gaps = 5/76 (6%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
+ + E C D + T+ V P+ I + +
Sbjct: 196 YRLVPSR-EAHQQSLACI---VNYHMDRFKESLTLNVQYEPEV-TIEGFDGNWYLQRMDV 250
Query: 78 ELVCSTSGGSPDPQIS 93
+L C P +
Sbjct: 251 KLTCKADANPPATEYH 266
Score = 25.1 bits (54), Expect = 4.3
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 58 PQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ + G + L CS + P +I+
Sbjct: 13 DPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKIT 48
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 55.1 bits (132), Expect = 7e-11
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 2 DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
+V SG + ++N D G ++C+ + ++ + +TVL P
Sbjct: 70 GRVHFTSNDVKSGDASINVTNLQLS-DIGTYQCK---VKKAPGVANKKFLLTVLVKPSGT 125
Query: 62 KISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ + G +L C GS Q
Sbjct: 126 RCF--VDGSEEIGNDFKLKCEPKEGSLPLQFE 155
Score = 24.3 bits (52), Expect = 7.3
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 52 VTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97
+++ TP Q + +G L C + SP+ Q + ++
Sbjct: 1 LSITTPEQRIE--------KAKGETAYLPCKFT-LSPEDQGPLDIE 37
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 53.1 bits (127), Expect = 3e-10
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVAT 72
+ ++I D G +EC + + VT+ P S ++
Sbjct: 62 TNNLSIVILALRPS-DEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI-SDFEIP 119
Query: 73 EGRAIELVCSTSGGSPDPQIS 93
++CSTSGG P+P +S
Sbjct: 120 TSNIRRIICSTSGGFPEPHLS 140
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 48.5 bits (115), Expect = 2e-08
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP 65
D + + L+++ A+ +G + CR G+ ++ ++V+ P S
Sbjct: 57 FFDIHRSANTFFLVVTAAN-ISHDGNYLCR---MKLGETEVTKQEHLSVVKPLTLSVHSE 112
Query: 66 GANPVATEGRAIELVCSTSGGSPDPQIS 93
+ + + C+ + P P +
Sbjct: 113 --RSQFPDFSVLTVTCTVN-AFPHPHVQ 137
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 49.0 bits (116), Expect = 2e-08
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 9 YRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ-PPKISPGA 67
+ P+ + I N C A G LHS +T+ V + P +S
Sbjct: 139 FVPNPKAG-ITIKNVKRAYHRLCVRCA--AQRDGTWLHSDKFTLKVREAIKAIPVVSVPE 195
Query: 68 NP-VATEGRAIELVCSTSGGSPDPQIS 93
+ +G +VC+ S
Sbjct: 196 TSHLLKKGDTFTVVCTIKDVSTSVNSM 222
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 48.5 bits (115), Expect = 3e-08
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ-PPKISPGANP-V 70
+ ++I + C G+ + S+ + + V + P +S +
Sbjct: 165 DPKAGIMIKSVKRAYHRLCLHCS--VDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYL 222
Query: 71 ATEGRAIELVCSTSGGSPDPQIS 93
EG + C+ S +
Sbjct: 223 LREGEEFTVTCTIKDVSSSVYST 245
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 48.0 bits (114), Expect = 4e-08
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 2 DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
+ + +S +L I + NG + C S +VTV P
Sbjct: 120 NGKAFKFFHWNS---NLTILKTNIS-HNGTYHCS---GMGKHRYTSAGISVTVKELFPAP 172
Query: 62 KISPGANPVATEGRAIELVCSTSGGSPDPQISVT 95
++ EG + L C T P + +
Sbjct: 173 VLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLY 206
Score = 38.0 bits (88), Expect = 1e-04
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
I++AS D+G++ C+ +G + +++ +L Q + V TEG +
Sbjct: 50 YRITSASVN-DSGEYRCQRGLSGRSDPIQLEIHRGWLL--LQVS------SRVFTEGEPL 100
Query: 78 ELVCSTSGGSPDPQIS 93
L C +
Sbjct: 101 ALRCHAWKDKLVYNVL 116
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 47.6 bits (113), Expect = 4e-08
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 18 LIISNASFERDNGKFECRLKAA-GSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
+ + + E D G + C + G + VL PP K + AT G
Sbjct: 70 ITFKSVTRE-DTGTYTCM--VSEEGGNSYGEVKVKLIVLVPPS--KPTVNIPSSATIGNR 124
Query: 77 IELVCSTSGGSPDPQIS 93
L CS GSP + +
Sbjct: 125 AVLTCSEQDGSPPSEYT 141
Score = 29.9 bits (67), Expect = 0.075
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 51 TVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+VTV + E ++L C+ S G P++
Sbjct: 4 SVTVHSSEP--------EVRIPENNPVKLSCAYS-GFSSPRVE 37
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 47.6 bits (113), Expect = 6e-08
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 13/104 (12%)
Query: 2 DKVEIIDYRPDSGRY------DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55
++ G+Y +L I E ++CR K +G+ S V+
Sbjct: 179 EEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 238
Query: 56 TPP----QPPKISPG--ANPVATEGRAIELVCSTSGGSPDPQIS 93
T P P +S + + L+C G P P
Sbjct: 239 TEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ-GYPVPVFR 281
Score = 46.5 bits (110), Expect = 2e-07
Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 9/89 (10%)
Query: 11 PDSGRY------DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS 64
P + + LII N D + C A V V+ P+ +
Sbjct: 568 PINRKQKVFPNGTLIIENVERNSDQATYTCV--AKNQEGYSARGSLEVQVMVLPRIIPFA 625
Query: 65 PGANPVATEGRAIELVCSTSGGSPDPQIS 93
P G+ + L CS GG I
Sbjct: 626 FEEGPA-QVGQYLTLHCSVPGGDLPLNID 653
Score = 39.9 bits (93), Expect = 3e-05
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 14/97 (14%)
Query: 2 DKVEIIDYRPDSGRYD--LIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPP 58
D+ ++ Y +G L I++ D G ++C K G + V P
Sbjct: 474 DRYQVGQYVTVNGDVVSYLNITSVHAN-DGGLYKCIAKSKVGVA----EHSAKLNVYGLP 528
Query: 59 QPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT 95
I G + + C +G P S+
Sbjct: 529 ---YIRQMEKKAIVAGETLIVTCPVAG---YPIDSIV 559
Score = 38.4 bits (89), Expect = 1e-04
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG-ANPVATEGRA 76
L I + E D G ++C + + + + PP I G +
Sbjct: 391 LRIESVKKE-DKGMYQCF--VRNDRESAEASAE-LKLGGRFDPPVIRQAFQEETMEPGPS 446
Query: 77 IELVCSTSGGSPDPQIS 93
+ L C G+P P+IS
Sbjct: 447 VFLKCVAG-GNPTPEIS 462
Score = 37.2 bits (86), Expect = 3e-04
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 17 DLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGR 75
L I G F C + AG + V PP+ I + +G
Sbjct: 678 VLTIEAVEAS-HAGNFTCHARNLAGHQ----QFTTPLNVYVPPRW--ILEPTDKAFAQGS 730
Query: 76 AIELVCSTSGGSPDPQIS 93
++ C G P PQ++
Sbjct: 731 DAKVECKAD-GFPKPQVT 747
Score = 35.3 bits (81), Expect = 0.001
Identities = 12/93 (12%), Positives = 23/93 (24%), Gaps = 9/93 (9%)
Query: 8 DYRPDSGRYDLIISNAS-----FERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPK 62
R S L+ E + C + G + V+ V+
Sbjct: 86 GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQ-FGSIISRDVHVRAVVAQYYEAD 144
Query: 63 ISPGANPVATEGRAIELVCSTSGGSPDPQISVT 95
++ G + + C D V+
Sbjct: 145 VNK---EHVIRGNSAVIKCLIPSFVADFVEVVS 174
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 47.6 bits (113), Expect = 6e-08
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 18 LIISNASFERDNGKFECRLKAA-GSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
L I D G + C + +++ + V V PP N A G++
Sbjct: 157 LQIRGIKKT-DEGTYRCE--GRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQS 213
Query: 77 IELVCSTSGGSPDPQIS 93
+ LVC G P+P +S
Sbjct: 214 VTLVCDAD-GFPEPTMS 229
Score = 39.1 bits (91), Expect = 5e-05
Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 8/89 (8%)
Query: 6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP 65
I D L I NA+ + D G ++C V + Q
Sbjct: 52 ISVVWNDDDSSTLTIYNANID-DAGIYKCV--VTAEDGTQSEATVNVKI---FQKLMFKN 105
Query: 66 GANPV-ATEGRAIELVCSTSGGSPDPQIS 93
P EG +VC S P I
Sbjct: 106 APTPQEFKEGEDAVIVCDVV-SSLPPTII 133
Score = 26.4 bits (58), Expect = 1.7
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 68 NPVATEGRAIELVCSTSGGSPDPQIS 93
+ G + +C +G + D IS
Sbjct: 11 QGEISVGESKFFLCQVAGDAKDKDIS 36
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 46.7 bits (111), Expect = 8e-08
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
L I N + D G + C + G+ + + V V PP N A G +
Sbjct: 59 LQILNINKS-DEGIYRCEGRVEARGE-IDFRDIIVIVNVPPAISMPQKSFNATAERGEEM 116
Query: 78 ELVCSTSGGSPDPQIS 93
C S GSP+P IS
Sbjct: 117 TFSCRAS-GSPEPAIS 131
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 47.1 bits (112), Expect = 9e-08
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
L I N + D G + C + G+ + + V V PP N A G +
Sbjct: 155 LQILNINKS-DEGIYRCEGRVEARGE-IDFRDIIVIVNVPPAISMPQKSFNATAERGEEM 212
Query: 78 ELVCSTSGGSPDPQIS 93
C S GSP+P IS
Sbjct: 213 TFSCRAS-GSPEPAIS 227
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 46.5 bits (110), Expect = 1e-07
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 18 LIISNASFERDNGKFECRLKAA-GSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
+ S+ + +DNG++ C + GQ+ +TVL PP K + T G
Sbjct: 67 ITFSSVT-RKDNGEYTCM--VSEEGGQNYGEVSIHLTVLVPPS--KPTISVPSSVTIGNR 121
Query: 77 IELVCSTSGGSPDPQIS 93
L CS GSP + S
Sbjct: 122 AVLTCSEHDGSPPSEYS 138
Score = 26.9 bits (59), Expect = 1.1
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 9/41 (21%)
Query: 53 TVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+V T + E +I+L C+ S G P++
Sbjct: 3 SVYTAQS--------DVQVPENESIKLTCTYS-GFSSPRVE 34
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 46.5 bits (110), Expect = 1e-07
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
D L +NA+F+ + G + C G + ++ + V P +P +
Sbjct: 42 WTLYSDGSSSILSTNNATFQ-NTGTYRCT--EPGDPLGGSAAIH-LYVKDPARPWNVLAQ 97
Query: 67 ANPVATEGRAIELVCSTSGGSPDPQIS 93
V E + L C + + +S
Sbjct: 98 -EVVVFEDQDALLPCLLTDPVLEAGVS 123
Score = 46.5 bits (110), Expect = 2e-07
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 11 PDSGRY------DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL-TPPQPPKI 63
Y I A F + ++C A G+ + S + V P PP +
Sbjct: 133 MRHTNYSFSPWHGFTIHRAKFI-QSQDYQCS--ALMGGRKVMSISIRLKVQKVIPGPPAL 189
Query: 64 SPG-ANPVATEGRAIELVCSTSGGSPDPQI 92
+ A V G A ++VCS S + +
Sbjct: 190 TLVPAELVRIRGEAAQIVCSASSVDVNFDV 219
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 45.6 bits (108), Expect = 2e-07
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG---- 66
D L I RD +EC A + S +TVL Q P+ P
Sbjct: 58 DDGSGSVLRIQPLRTPRDEAIYECV---ASNNVGEISVSTRLTVLREDQIPRGFPTIDMG 114
Query: 67 -ANPVATEGRAIELVCSTSGGSPDPQIS 93
V R ++C+ S G+PDP+I+
Sbjct: 115 PQLKVVERTRTATMLCAAS-GNPDPEIT 141
Score = 29.0 bits (65), Expect = 0.17
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 53 TVLTPPQ---PPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
T TPP+ P + G +C + G P P+I
Sbjct: 2 TGETPPRFTRTPV-----DQTGVSGGVASFICQAT-GDPRPKIV 39
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 45.5 bits (107), Expect = 3e-07
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 2 DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
+ I+ +G+ L I N + D+GK+ C + G + + V
Sbjct: 69 GRTSILRDGITAGKAALRIHNVTAS-DSGKYLCYFQ---DGDFYEKALVELKVAALGSDL 124
Query: 62 KISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ + I L C ++G P PQI
Sbjct: 125 HVDV----KGYKDGGIHLECRSTGWYPQPQIQ 152
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 44.8 bits (106), Expect = 3e-07
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 14/95 (14%)
Query: 2 DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ-- 59
+ VE+ R ++ + I+ E D+G++ C + T+ V P
Sbjct: 42 NGVELTATRKNASNMEYRINKPRAE-DSGEYHCVYHFVSA----PKANATIEVKAAPDIT 96
Query: 60 -PPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ + EG+ + C + G P P+
Sbjct: 97 GHKR-----SENKNEGQDAMMYCKSV-GYPHPEWM 125
Score = 29.4 bits (66), Expect = 0.13
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 60 PPKISPGANPV-ATEGRAIELVCSTSGGSPDPQISVT 95
P+I + + L C+ + S +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLT-SSSHTLMYSY 38
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 45.3 bits (107), Expect = 4e-07
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
L + + + D G +EC HS + VL P P ISP + G +
Sbjct: 344 LTLLSVTRN-DVGPYECG--IQNELSVDHSDPVILNVLYGPDDPTISP-SYTYYRPGVNL 399
Query: 78 ELVCSTSGGSPDPQIS 93
L C + +P Q S
Sbjct: 400 SLSCHAA-SNPPAQYS 414
Score = 42.6 bits (100), Expect = 4e-06
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
L + N + D + C S S T+ VL P P ISP + G +
Sbjct: 522 LTLFNVTRN-DARAYVCG--IQNSVSANRSDPVTLDVLYGPDTPIISP-PDSSYLSGANL 577
Query: 78 ELVCSTSGGSPDPQIS 93
L C ++ +P PQ S
Sbjct: 578 NLSCHSA-SNPSPQYS 592
Score = 42.2 bits (99), Expect = 4e-06
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 8 DYRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
+ +G L + N + D ++C + + + S + VL P P ISP
Sbjct: 156 RLQLSNGNRTLTLFNVTRN-DTASYKCETQNPVSARR---SDSVILNVLYGPDAPTISP- 210
Query: 67 ANPVATEGRAIELVCSTSGGSPDPQIS 93
N G + L C + +P Q S
Sbjct: 211 LNTSYRSGENLNLSCHAA-SNPPAQYS 236
Score = 41.9 bits (98), Expect = 7e-06
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 17 DLIISNASFERDNGKFECRLKAAGS--GQDLHSQVYTVTVLTPPQPPKISPGANPVATEG 74
+L I N + ++G + C+ A + + V T+TV P P I+ + +
Sbjct: 249 ELFIPNIT-VNNSGSYTCQ---AHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDE 304
Query: 75 RAIELVCSTSGGSPDPQI 92
A+ L C +
Sbjct: 305 DAVALTCE-PEIQNTTYL 321
Score = 39.9 bits (93), Expect = 3e-05
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 2 DKVEIIDYRPDSGRY------DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55
+ SGR L+I N + D G + + + + + + V
Sbjct: 51 GTQQATPGPAYSGREIIYPNASLLIQNII-QNDTGFYTLHVIKSDLVNEEATGQFRVYPE 109
Query: 56 TPPQPPKISPGANPVATEGRAIELVCSTSGGSP 88
P P S + PV + A+ C
Sbjct: 110 LPK-PSISSNNSKPV-EDKDAVAFTCEPETQDA 140
Score = 38.4 bits (89), Expect = 9e-05
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 18 LIISNASFERDNGKFECRLKAAGS-GQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
L ISN + + ++G + C+ A S + V T+TV P IS + + A
Sbjct: 428 LFISNITEK-NSGLYTCQ--ANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDA 484
Query: 77 IELVCSTSGGSPDPQI 92
+ C +
Sbjct: 485 VAFTCE-PEAQNTTYL 499
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 44.5 bits (104), Expect = 6e-07
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 11 PDSGRYDLIISNASFERDNGKFECRLKAAGS----GQDLHSQVYTVTVLTPPQPPKISPG 66
+ L +++ + D G++ C++ G D S V VT TP +S
Sbjct: 85 ANLAAPTLRLTHVHPQ-DGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTA 143
Query: 67 ANPVATEGRAIELVCSTSGGSPDPQIS 93
EG I + C + + ++
Sbjct: 144 EVVQVDEGNDITMTCPCT-DCANANVT 169
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 44.6 bits (105), Expect = 7e-07
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 2 DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
P+S L NA+F+ + G + C + ++ + V P
Sbjct: 37 PISPYWTLDPESPGSTLTTRNATFK-NTGTYRCT--ELEDPMAGSTTIH-LYVKDPAHSW 92
Query: 62 KISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ EG+ L C + + +S
Sbjct: 93 NLLAQ-EVTVVEGQEAVLPCLITDPALKDSVS 123
Score = 42.6 bits (100), Expect = 3e-06
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT-PPQPPKISPGA-NPV 70
S II A D+ + C+ +G++ S + V P+PP+I V
Sbjct: 141 SPWRGFIIRKAKVL-DSNTYVCK--TMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLV 197
Query: 71 ATEGRAIELVCSTSGGSPDPQIS 93
G A ++VCS + +
Sbjct: 198 RIRGEAAQIVCSAT-NAEVGFNV 219
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 43.8 bits (103), Expect = 8e-07
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVAT 72
+ Y L +SN E D G + ++ S + YT+ +L + +++ +
Sbjct: 67 TQSYSLQLSNLKME-DTGSYRAQISTKTSAK---LSSYTLRILRQLRNIQVTNHSQLFQN 122
Query: 73 EGRAIELVCSTSGGSPDPQIS 93
+ L CS +
Sbjct: 123 MTCELHLTCSVEDADDNVSFR 143
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 44.3 bits (104), Expect = 9e-07
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 28 DNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGS 87
++ + C+ +++ S Y V L V +G I L+C G+
Sbjct: 152 EDRSYICK--TTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVI-GN 208
Query: 88 PDPQIS 93
Sbjct: 209 EVVNFE 214
Score = 42.0 bits (98), Expect = 6e-06
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 3 KVEIIDYRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPP 61
E+ + + L ++N + D G++ C + G D ++Y + V P
Sbjct: 38 PQEMAKAQDGTFSSVLTLTNLTGL-DTGEYFCTHNDSRGLETDERKRLY-IFVPDPTVGF 95
Query: 62 KISPGANPV--ATEGRAIELVCSTSGGSPDPQIS 93
+ TE I + C + P ++
Sbjct: 96 LPNDAEELFIFLTEITEITIPCRVTD--PQLVVT 127
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 44.5 bits (104), Expect = 9e-07
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 27 RDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGG 86
+++ + C + +TV P+ +++P G+ + L C GG
Sbjct: 58 QEDSQPMCYSNCPDGQS---TAKTFLTVYWTPERVELAPL-PSWQPVGKNLTLRCQVEGG 113
Query: 87 SPDPQISVTL 96
+P ++V L
Sbjct: 114 APRANLTVVL 123
Score = 41.8 bits (97), Expect = 8e-06
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 22 NASFERDNGKFECRLKAAGSGQDLH-SQVYTVTVLTPPQPPKISPGANPVATEGRAIELV 80
A+ E + F C +GQ +H +Q + VL P+ + N E +
Sbjct: 332 KATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 391
Query: 81 CSTSGGSPDPQIS 93
C G+P P++
Sbjct: 392 CQAW-GNPLPELK 403
Score = 32.5 bits (73), Expect = 0.014
Identities = 17/94 (18%), Positives = 25/94 (26%), Gaps = 7/94 (7%)
Query: 8 DYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLH-----SQVYTVTVLTPPQPPK 62
+ + + F CR + Q L S Y + P P
Sbjct: 134 PAVGEPAEVTTTVLVRR-DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPP 192
Query: 63 ISPGANPVATEGRAIELVCSTSGGSPDPQISVTL 96
+ V +VCS G P + V L
Sbjct: 193 Q-LVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225
Score = 32.1 bits (72), Expect = 0.015
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
+ Y DS +S + + + C G + TVT+ + P P I
Sbjct: 236 VTYGNDSFSAKASVSVTAEDEGTQRLTCA---VILGNQSQETLQTVTIYSFPAPNVILT- 291
Query: 67 ANPVATEGRAIELVCSTSGGSPDPQISVT 95
P +EG + + C P ++++
Sbjct: 292 -KPEVSEGTEVTVKCE---AHPRAKVTLN 316
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 43.7 bits (103), Expect = 9e-07
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
L I + + D ++ + G+++ +++ + + PKIS
Sbjct: 68 LKIKHLKTD-DQDIYKVSIYDT-KGKNVLEKIFDLKIQERVSKPKIS-------WTCINT 118
Query: 78 ELVCSTSGGSPDPQIS 93
L C G DP+++
Sbjct: 119 TLTCEVMNG-TDPELN 133
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 43.8 bits (103), Expect = 1e-06
Identities = 11/100 (11%), Positives = 26/100 (26%), Gaps = 14/100 (14%)
Query: 7 IDYRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQ------------DLHSQVYTVT 53
+ ++G ++ + E D G + +L+ + +
Sbjct: 157 MHIDRNTGIIEMFMEKLQDE-DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQ 215
Query: 54 VLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
Q P + T + L C + + I
Sbjct: 216 EWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIV 255
Score = 37.7 bits (87), Expect = 2e-04
Identities = 8/99 (8%), Positives = 24/99 (24%), Gaps = 11/99 (11%)
Query: 2 DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQ- 59
++E+ + + + + D G + C + G + L
Sbjct: 47 PRLEV---ESKGNKTKMTFKDLGMD-DLGIYSCDVTDTDGIASSYLIDEEELKRLLALSH 102
Query: 60 -----PPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ E + S + +++
Sbjct: 103 EHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVN 141
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 43.6 bits (102), Expect = 2e-06
Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 1/92 (1%)
Query: 2 DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
+VE+ + L I D G ++C + ++ V
Sbjct: 72 QRVEVTECSDGLFCKTLTIPKVIGN-DTGAYKCFYRETDLASVIYVYVQDYRSPFIASVS 130
Query: 62 KISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ + + + C S + + +
Sbjct: 131 DQHGVVYITENKNKTVVIPCLGSISNLNVSLC 162
Score = 42.8 bits (100), Expect = 3e-06
Identities = 12/83 (14%), Positives = 19/83 (22%), Gaps = 3/83 (3%)
Query: 13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVAT 72
+ I + G C K V V +SP +
Sbjct: 180 DSKKGFTIPSYMIS-YAGMVFCEAKIND-ESYQSIMYIVVVVGYRIYDVVLSPSHGIELS 237
Query: 73 EGRAIELVCSTSGGSPDPQISVT 95
G + L C+ + I
Sbjct: 238 VGEKLVLNCTAR-TELNVGIDFN 259
Score = 42.1 bits (98), Expect = 7e-06
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPV- 70
+ + + NAS + D G + C + + H V +TV P I+
Sbjct: 621 TNDILIMELKNASLQ-DQGDYVCLAQDRK-TKKRHCVVRQLTV-LERVAPTITGNLENQT 677
Query: 71 ATEGRAIELVCSTSGGSPDPQIS 93
+ G +IE+ C+ S G+P PQI
Sbjct: 678 TSIGESIEVSCTAS-GNPPPQIM 699
Score = 39.7 bits (92), Expect = 3e-05
Identities = 20/93 (21%), Positives = 26/93 (27%), Gaps = 6/93 (6%)
Query: 2 DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
D L I + D G + C A SG V V P
Sbjct: 276 DLKTQSGSEMKKFLSTLTIDGVTRS-DQGLYTCA---ASSGLMTKKNSTFVRVHEKPFVA 331
Query: 62 KIS-PGANPVATEGRAIELVCSTSGGSPDPQIS 93
S + AT G + + G P P+I
Sbjct: 332 FGSGMESLVEATVGERVRIPAKYL-GYPPPEIK 363
Score = 37.0 bits (85), Expect = 4e-04
Identities = 18/77 (23%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ-PPKISPGANPVATEGRA 76
L I S D G + L ++ S V ++ V PPQ K G
Sbjct: 383 LTIMEVSER-DTGNYTVILTNP-ISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTT 440
Query: 77 IELVCSTSGGSPDPQIS 93
L C+ P I
Sbjct: 441 QTLTCTVYAIPPPHHIH 457
Score = 34.3 bits (78), Expect = 0.003
Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 12 DSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGANPV 70
+ + + + ++C G G +V + V + P+I+ +
Sbjct: 509 GKNKTVSTLVIQAAN-VSALYKCEAVNKVGRG----ERVISFHVT---RGPEITLQPDMQ 560
Query: 71 ATEGRAIELVCSTSGGSPDPQIS 93
TE ++ L C+ S ++
Sbjct: 561 PTEQESVSLWCTAD-RSTFENLT 582
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 42.7 bits (100), Expect = 2e-06
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLH-SQVYTVTVLTPPQPPKISPGANPVA 71
G ++ A+ E + F C +GQ +H +Q + VL P+ + N
Sbjct: 138 LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTW 197
Query: 72 TEGRAIELVCSTSGGSPDPQIS 93
E +C G+P P++
Sbjct: 198 PENSQQTPMCQAW-GNPLPELK 218
Score = 35.0 bits (80), Expect = 0.002
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 57 PPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97
P PP++ V +VCS G P + V L
Sbjct: 3 PATPPQLVSP--RVLEVDTQGTVVCSLDGLFPVSEAQVHLA 41
Score = 33.5 bits (76), Expect = 0.005
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
+ Y DS +S + + + C + Q+ TVT+ + P P
Sbjct: 51 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ---TVTIYSFPAP--NVIL 105
Query: 67 ANPVATEGRAIELVCSTSGGSPDPQISVT 95
P +EG + + C P ++++
Sbjct: 106 TKPEVSEGTEVTVKCE---AHPRAKVTLN 131
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 42.4 bits (100), Expect = 2e-06
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 12/79 (15%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP---QPPKISPGANPVATEG 74
L I + + D+G + C A + V P +PP N EG
Sbjct: 64 LTILSVE-DSDDGIYCCT--ANNGVGGAVESCGALQVKMKPKITRPPI-----NVKIIEG 115
Query: 75 RAIELVCSTSGGSPDPQIS 93
L C+T G+P P +S
Sbjct: 116 LKAVLPCTTM-GNPKPSVS 133
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 42.5 bits (100), Expect = 3e-06
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
L + N D G + CR A + + + V P I N E +
Sbjct: 60 LTVRNIINS-DGGPYVCR---ATNKAGEDEKQAFLQVFVQP---HIIQLKNETTYENGQV 112
Query: 78 ELVCSTSGGSPDPQIS 93
LVC G P P+I+
Sbjct: 113 TLVCDAE-GEPIPEIT 127
Score = 27.5 bits (61), Expect = 0.59
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 56 TPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ P N A G + C S GSP+P IS
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRAS-GSPEPAIS 37
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 41.8 bits (98), Expect = 4e-06
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 16/101 (15%)
Query: 7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP-------- 58
+ ++G ++ + E D G + +L+ G + + V V
Sbjct: 52 MHIDRNTGIIEMFMEKLQDE-DEGTYTFQLQD-GKATNHSTVVLVGDVFKKLQKEAEFQR 109
Query: 59 ------QPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
Q P + T + L C + + I
Sbjct: 110 QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIV 150
Score = 25.7 bits (56), Expect = 3.0
Identities = 3/34 (8%), Positives = 8/34 (23%)
Query: 60 PPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
P E + S + +++
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVN 36
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 41.7 bits (97), Expect = 5e-06
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
L ++ SF + + C + V + + P+ P+I + G+ I
Sbjct: 56 LTMNPVSFG-NEHSYLCTAT---CESRKLEKGIQVEIYSFPKDPEIHL--SGPLEAGKPI 109
Query: 78 ELVCSTSGGSPDPQISVTL 96
+ CS + P ++ + L
Sbjct: 110 TVKCSVADVYPFDRLEIDL 128
Score = 30.1 bits (67), Expect = 0.067
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 62 KISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ +P + +A G ++ L CST+ G P S
Sbjct: 4 ETTPESRYLAQIGDSVSLTCSTT-GCESPFFS 34
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 41.7 bits (98), Expect = 6e-06
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG-----ANPVAT 72
L I RD +EC A + + +TVL Q P P V
Sbjct: 65 LRIQPLRTPRDENVYECV---AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 73 EGRAIELVCSTSGGSPDPQIS 93
R ++C+ S G+PDP+I+
Sbjct: 122 RTRTATMLCAAS-GNPDPEIT 141
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 41.2 bits (97), Expect = 7e-06
Identities = 15/84 (17%), Positives = 23/84 (27%), Gaps = 8/84 (9%)
Query: 12 DSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQ-PPKISPGANP 69
D + L + E D G + C G + + PQ P
Sbjct: 59 DGRTHTLTVMTEEQE-DEGVYTCIATNEVGE----VETSSKLLLQATPQFHPGYPLKEKY 113
Query: 70 VATEGRAIELVCSTSGGSPDPQIS 93
G + L G P P ++
Sbjct: 114 YGAVGSTLRLHVMYI-GRPVPAMT 136
Score = 27.7 bits (62), Expect = 0.51
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 11 PDSGRYDLIISNASFERDNGKFECRLK-AAGS 41
L++ N + GK++ +L G+
Sbjct: 154 NTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGT 185
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 41.6 bits (97), Expect = 7e-06
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 9 YRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQ--PPKI-S 64
+ G L++ + + E D G + C L A Q ++ + + + P I S
Sbjct: 173 FLSVRGTTHLLVHDVALE-DAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIIS 231
Query: 65 PGANPVATEGRAIELVCSTSGGSPDPQISVT 95
P A+ G + + C G+ P ++
Sbjct: 232 PLKTISASLGSRLTIPCKVFLGTGTPLTTML 262
Score = 36.2 bits (83), Expect = 6e-04
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 8/80 (10%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
L + A E D+G + C + + V + T +
Sbjct: 83 LWLLPALQE-DSGTYVCT---TRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSG 138
Query: 78 ELVCSTSG----GSPDPQIS 93
LVC D +I
Sbjct: 139 VLVCPDLSEFTRDKTDVKIQ 158
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 41.8 bits (97), Expect = 7e-06
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 27 RDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGG 86
+++ + C + +TV P+ +++P G+ + L C GG
Sbjct: 58 QEDSQPMCYSNCPDGQS---TAKTFLTVYWTPERVELAP-LPSWQPVGKNLTLRCQVEGG 113
Query: 87 SPDPQISVTL 96
+P ++V L
Sbjct: 114 APRANLTVVL 123
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 41.3 bits (97), Expect = 8e-06
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
L + + D G++ C +G+D S + V PP+ K + + +
Sbjct: 255 LTVLKVTKG-DAGQYTCYASNV-AGKDSCS--AQLGVQEPPRFIK-KLEPSRIVKQDEHT 309
Query: 78 ELVCSTSGGSPDPQIS 93
C GSP+ ++
Sbjct: 310 RYECKIG-GSPEIKVL 324
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 41.4 bits (96), Expect = 9e-06
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVAT-EGRA 76
L I+N + + ++ C D + + +PP P + T +
Sbjct: 91 LWIANYTSNDSHRRYLCT--VTTKNGDCVQGIVRSHIR---KPPSCIPETYELGTHDKYG 145
Query: 77 IELVCSTSGGSPDPQIS 93
I+L C I+
Sbjct: 146 IDLYCGILYAKHYNNIT 162
Score = 35.6 bits (81), Expect = 0.001
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 18 LIISNASFERDNGKFECR--LKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPV--ATE 73
LII N E D+G+++C D+ + + P Q + +P T
Sbjct: 184 LIIHNPELE-DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTI 242
Query: 74 GRAIELVCSTSGG-SPDPQISVT 95
G + C+ + +
Sbjct: 243 GEPANITCTAVSTSLLVDDVLID 265
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 41.4 bits (97), Expect = 9e-06
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 18 LIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
L+ E D G + C + G Q +TV++ P+ + P V +G+
Sbjct: 272 LLFKTTLPE-DEGVYTCEVDNGVGKPQ---KHSLKLTVVSAPKY-EQKPEKVIVVKQGQD 326
Query: 77 IELVCSTSGGSPDPQIS 93
+ + C + G P P +
Sbjct: 327 VTIPCKVT-GLPAPNVV 342
Score = 39.5 bits (92), Expect = 4e-05
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 9 YRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGA 67
R D G L+ D G ++C + AG S+V + P +
Sbjct: 57 LRKDEGS--LVFLRPQ-ASDEGHYQCFAETPAGV---ASSRVISFRKTYLIASPAKTH-- 108
Query: 68 NPVATEGRAIELVCSTSGGSPDPQIS 93
EGR +L C P P I+
Sbjct: 109 EKTPIEGRPFQLDCVLPNAYPKPLIT 134
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 40.8 bits (95), Expect = 1e-05
Identities = 11/86 (12%), Positives = 21/86 (24%), Gaps = 6/86 (6%)
Query: 11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPV 70
+ + + C + + P ++ P P
Sbjct: 47 RGLRWLARQLVDIR--EPETQPVCF---FRCARRTLQARGLIRTFQRPDRVELMP-LPPW 100
Query: 71 ATEGRAIELVCSTSGGSPDPQISVTL 96
G L C G P +++TL
Sbjct: 101 QPVGENFTLSCRVPGAGPRASLTLTL 126
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 40.5 bits (95), Expect = 2e-05
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ---PPKISPGAN 68
G + LII++ + + D ++ R A G + + V P + P +
Sbjct: 58 KGGYHQLIIASVTDD-DATVYQVR--ATNQGGSVSGTAS-LEVEVPAKIHLPKTLEGMGA 113
Query: 69 PVATEGRAIELVCSTSGGSPDPQIS 93
A G + + S G PDP I+
Sbjct: 114 VHALRGEVVSIKIPFS-GKPDPVIT 137
Score = 27.4 bits (61), Expect = 0.80
Identities = 8/35 (22%), Positives = 10/35 (28%), Gaps = 2/35 (5%)
Query: 60 PPKISPG-ANPVATEGRAIELVCSTSGGSPDPQIS 93
P N LVC + G P P +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVT-GHPKPIVK 37
Score = 25.1 bits (55), Expect = 4.2
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 29/84 (34%)
Query: 10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANP 69
R D+G Y + N G D + + V P PP
Sbjct: 170 RKDAGFYVVCAKNR-----------------FGID--QKTVELDVADVPDPP-----RGV 205
Query: 70 VATE--GRAIELV---CSTSGGSP 88
++ ++ L ++ GGS
Sbjct: 206 KVSDVSRDSVNLTWTEPASDGGSK 229
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 40.2 bits (94), Expect = 2e-05
Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT----PPQPPKISPG 66
G L I RD+ +EC A D S T+T+ P P I+ G
Sbjct: 59 QPGGISILRIEPVRAGRDDAPYECV--AENGVGDAVSADATLTIYEGDKTPAGFPVITQG 116
Query: 67 -ANPVATEGRAIELVCSTSGGSPDPQIS 93
V G + + C G+P P I
Sbjct: 117 PGTRVIEVGHTVLMTCKAI-GNPTPNIY 143
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 40.1 bits (93), Expect = 2e-05
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 27 RDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGG 86
+++ + C + +TV P+ +++P G+ + L C GG
Sbjct: 58 QEDSQPMCYSNCPDGQS---TAKTFLTVYWTPERVELAP-LPSWQPVGKQLTLRCQVEGG 113
Query: 87 SPDPQISVTL 96
+P Q++V L
Sbjct: 114 APRAQLTVVL 123
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 39.8 bits (93), Expect = 2e-05
Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 12/91 (13%)
Query: 6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP---QPPK 62
I D L I NA+ + D G ++C V + P
Sbjct: 52 ISVVWNDDDSSTLTIYNANID-DAGIYKCV--VTAEDGTQSEATVNVKIFQKLMFKNAPT 108
Query: 63 ISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
EG +VC S P I
Sbjct: 109 -----PQEFKEGEDAVIVCDVV-SSLPPTII 133
Score = 29.0 bits (65), Expect = 0.16
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 59 QPPKISPG-ANPVATEGRAIELVCSTSGGSPDPQIS 93
+ ++ + + G + +C +G + D IS
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDIS 36
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 39.4 bits (91), Expect = 2e-05
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI 63
+ ISN + D G++ C + + + VTVL PQ P I
Sbjct: 99 TPHELSISISNVA-LADEGEYTCSI----FTMPVRTAKSLVTVLGIPQKPII 145
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 40.3 bits (94), Expect = 2e-05
Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 9 YRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQ---DLHSQVYTVTVLTPPQPPKIS 64
+ G L+I+ S + D G +E LK G + L + + ++ + +S
Sbjct: 54 HDFKDGICTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALS 112
Query: 65 PGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ + I+L + D +++
Sbjct: 113 ATDLKIQSTAEGIQLYSFVTYYVEDLKVN 141
Score = 33.3 bits (76), Expect = 0.005
Identities = 6/39 (15%), Positives = 11/39 (28%)
Query: 55 LTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ P P + T + L C + + I
Sbjct: 2 IDPFTGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIV 40
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 39.2 bits (91), Expect = 4e-05
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 15/92 (16%)
Query: 2 DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
D+ + D G + LII N D+ + C + Q Q+ +
Sbjct: 54 DRADSRRSLWDQGNFPLIIKNLK-IEDSDTYICEV----EDQKEEVQLLVFGLTANS--- 105
Query: 62 KISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ +G+++ L + P +
Sbjct: 106 ------DTHLLQGQSLTLTLESP-PGSSPSVQ 130
Score = 25.3 bits (55), Expect = 3.3
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 70 VATEGRAIELVCSTSGGSPDPQIS 93
+ +G +EL C+ S Q
Sbjct: 6 LGKKGDTVELTCTAS-QKKSIQFH 28
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 39.4 bits (92), Expect = 4e-05
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 18 LIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
L+I+N + +D G ++C + G+ + S+ + + V G+
Sbjct: 64 LLINNPNKTQDAGTYQCIATNSFGT---IVSREAKLQFAYLENFKTRTRSTVSVR-RGQG 119
Query: 77 IELVCSTSGGSPDPQIS 93
+ L+C S + +
Sbjct: 120 MVLLCGPPPHSGELSYA 136
Score = 38.7 bits (90), Expect = 9e-05
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 14/95 (14%)
Query: 11 PDSGRY------DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS 64
D+ R+ +L I+ D G + C + + + + + +
Sbjct: 146 QDNRRFVSQETGNLYIAKVEKS-DVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYE 204
Query: 65 PG------ANPVATEGRAIELVCSTSGGSPDPQIS 93
P A +G ++L C G+P P I
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFAL-GNPVPTIL 238
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 39.3 bits (91), Expect = 5e-05
Identities = 9/93 (9%), Positives = 27/93 (29%), Gaps = 6/93 (6%)
Query: 1 MDKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP 60
+ + + +S E C A ++++T+ + Q
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCC--ARNELGRECTRLFTIDL---NQT 229
Query: 61 PKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
P+ + + G + + C + ++
Sbjct: 230 PQTTLPQLFLK-VGEPLWIRCKAVHVNHGFGLT 261
Score = 38.9 bits (90), Expect = 6e-05
Identities = 9/76 (11%), Positives = 20/76 (26%), Gaps = 8/76 (10%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
+S+ + D G + C SQ VT++ + + +
Sbjct: 292 AFVSSVARN-DTGYYTCS------SSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEF 344
Query: 78 ELVCSTSGGSPDPQIS 93
P + +
Sbjct: 345 CFSVRFK-AYPQIRCT 359
Score = 33.5 bits (76), Expect = 0.006
Identities = 5/43 (11%), Positives = 8/43 (18%), Gaps = 1/43 (2%)
Query: 51 TVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
L P + A +I L +
Sbjct: 40 LGCALRPQSSGTVYEAAAVEVDVSASITLQVLVD-APGNISCL 81
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 39.1 bits (91), Expect = 5e-05
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA-GSGQDLHSQVYTVTVLTPPQPPKIS 64
I Y+ + + LI+ + D G + C G H+ V + +P +
Sbjct: 66 IGGYKVRNQHWSLIMESVVPS-DKGNYTCV--VENEYGSINHTYHLDVVERSRHRPILQA 122
Query: 65 PG-ANPVATEGRAIELVCSTSGGSPDPQIS 93
AN G +E VC P I
Sbjct: 123 GLPANASTVVGGDVEFVCKVY-SDAQPHIQ 151
Score = 31.4 bits (71), Expect = 0.030
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 3 KVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGS--GQDLHSQVYTVTVLTPPQP 60
KV S L + N + D G++ C+ + GQ S +TVL Q
Sbjct: 172 KVLKHSGINSSNAEVLALFNVTEA-DAGEYICK---VSNYIGQANQS--AWLTVLPKQQA 225
Query: 61 PK 62
P
Sbjct: 226 PG 227
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 38.9 bits (91), Expect = 5e-05
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ---PPKISPGA 67
G + LII++ + + D ++ R A G + ++ V P + P +
Sbjct: 57 FKGGYHQLIIASVTDD-DATVYQVR--ATNQGGSVSGTA-SLEVEVPAKIHLPKTLEGMG 112
Query: 68 NPVATEGRAIELVCSTSGGSPDPQIS 93
A G + + S G PDP I+
Sbjct: 113 AVHALRGEVVSIKIPFS-GKPDPVIT 137
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 39.2 bits (91), Expect = 5e-05
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 6 IIDYRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKIS 64
I + ++ L++ + D G + C ++ GS + V +P +P +
Sbjct: 170 IGGIKLRHQQWSLVMESVVPS-DRGNYTCVVENKFGS--IRQTYTLDVLERSPHRPILQA 226
Query: 65 PG-ANPVATEGRAIELVCSTSGGSPDPQIS 93
AN A G +E C P I
Sbjct: 227 GLPANQTAVLGSDVEFHCKVY-SDAQPHIQ 255
Score = 32.3 bits (73), Expect = 0.014
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 57 PPQPPKISPGA--NPVATEGRAIELVCSTSGGSPDPQIS 93
+ P PG V G A+EL C GG P
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTV 42
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 39.1 bits (90), Expect = 5e-05
Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 9/86 (10%)
Query: 10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANP 69
L++ + D G + C + V + P+ P+ +
Sbjct: 78 DTFHNDGSLLLQDVQKA-DEGIYTCE---IRLKNESMVMKKPVELWVLPEEPR-----DL 128
Query: 70 VATEGRAIELVCSTSGGSPDPQISVT 95
G ++ CS V
Sbjct: 129 RVRVGDTTQMRCSIQSTEEKRVTKVN 154
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 38.7 bits (90), Expect = 6e-05
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 17/96 (17%)
Query: 11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ----------- 59
P+ +LI + + D G + CR + SQ + V P+
Sbjct: 60 PNGNTSELIFNAVHVK-DAGFYVCR--VNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSE 116
Query: 60 -PPKIS-PGANPVATEGRAIELVCSTSGGSPDPQIS 93
+I + G + L C GSP P
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQ 151
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 39.0 bits (90), Expect = 7e-05
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 15/92 (16%)
Query: 2 DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
D+ + D G + LII N E D+ + C + +++ V+ +T
Sbjct: 53 DRADSRRSLWDQGNFPLIIKNLKIE-DSDTYIC--EVEDQKEEVQLLVFGLTA-----NS 104
Query: 62 KISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+G+++ L + P +
Sbjct: 105 DTH------LLQGQSLTLTLESP-PGSSPSVQ 129
Score = 25.1 bits (54), Expect = 4.7
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 70 VATEGRAIELVCSTSGGSPDPQIS 93
+ +G +EL C+ S Q
Sbjct: 5 LGKKGDTVELTCTASQK-KSIQFH 27
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 38.8 bits (90), Expect = 7e-05
Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 12/103 (11%)
Query: 2 DKVEIIDYRPDSGRY------DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55
++ G+Y +L I E ++CR K +G+ S V+
Sbjct: 144 EEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 203
Query: 56 TPPQ----PPKISPGANPV-ATEGRAIELVCSTSGGSPDPQIS 93
T P P + P+ I L+C G P P
Sbjct: 204 TEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ-GFPAPSFR 245
Score = 31.1 bits (70), Expect = 0.039
Identities = 11/84 (13%), Positives = 21/84 (25%), Gaps = 11/84 (13%)
Query: 18 LIISNASFER-----DNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVA 71
L+ E + C + GS + S+ V + +
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFGS---IISRDVHVRAVVAQ-YYEADVN-KEHV 115
Query: 72 TEGRAIELVCSTSGGSPDPQISVT 95
G + + C D V+
Sbjct: 116 IRGNSAVIKCLIPSFVADFVEVVS 139
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 38.7 bits (90), Expect = 8e-05
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 18 LIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
L+ISN +D G ++C A G+ + S+ ++ + + TEG
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGT---VVSREASLRFGFLQEFSAEERDPVKI-TEGWG 118
Query: 77 IELVCSTSGGSPDPQIS 93
+ CS P
Sbjct: 119 VMFTCSPPPHYPALSYR 135
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 38.2 bits (88), Expect = 9e-05
Identities = 12/78 (15%), Positives = 18/78 (23%), Gaps = 3/78 (3%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
I + G C K V V +SP + G +
Sbjct: 66 FTIPSYMI-SYAGMVFCEAKINDESYQ-SIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 123
Query: 78 ELVCSTSGGSPDPQISVT 95
L C+ + I
Sbjct: 124 VLNCTAR-TELNVGIDFN 140
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 38.3 bits (89), Expect = 1e-04
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 11 PDSGRY------DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS 64
R DL SN + + C + + +T+ VLT + +
Sbjct: 160 TQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERT 219
Query: 65 PG--------ANPVATEGRAIELVCSTSGGSPDPQIS 93
P ++ + G + L C S G P P I+
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIAS-GVPTPDIA 255
Score = 34.1 bits (78), Expect = 0.004
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 7 IDYRPDSGRYDLIISNASF---ERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPK 62
+ R SG L+I S E G+++C + G+ S + V P PK
Sbjct: 66 VSMRRRSG--TLVIDFRSGGRPEEYEGEYQCFARNKFGT---ALSNRIRLQVSKSPLWPK 120
Query: 63 ISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ V EG + L C+ G P P I
Sbjct: 121 ENLD-PVVVQEGAPLTLQCNPPPGLPSPVIF 150
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 37.5 bits (87), Expect = 2e-04
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVA 71
+ + + E+D G++ C A S+ ++ + +
Sbjct: 65 GALFFYRTMQGKK-EQDGGEYWCV--AKNRVGQAVSRHASLQIAVLR-DDFRVEPKDTRV 120
Query: 72 TEGRAIELVCSTSGGSPDPQIS 93
+G L C G P+P +
Sbjct: 121 AKGETALLECGPPKGIPEPTLI 142
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 36.3 bits (84), Expect = 4e-04
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
A+ D+G++ C+ + S +TVL + EG I
Sbjct: 53 SYRFKANNN-DSGEYTCQ--TGQTSL---SDPVHLTVLFEWLVLQTPH---LEFQEGETI 103
Query: 78 ELVCSTSGGSPDPQIS 93
L C + P +++
Sbjct: 104 MLRCHSWKDKPLVKVT 119
Score = 25.2 bits (55), Expect = 4.3
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 60 PPK----ISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
PPK + P V + ++ L C + I
Sbjct: 2 PPKAVLKLEPPWINV-LQEDSVTLTCQGARSPESDSIQ 38
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 36.0 bits (82), Expect = 6e-04
Identities = 16/101 (15%), Positives = 27/101 (26%), Gaps = 11/101 (10%)
Query: 2 DKVEIIDYRPDSGR-----YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT 56
D E I++R R L D G + C L+ + + V
Sbjct: 60 DLEEPINFRLPENRISKEKDVLWFRPTLLN-DTGNYTCMLRNTTYCSKVAFPL-EVVQKD 117
Query: 57 PPQPPKISPGANPVATEGRAIELVCST----SGGSPDPQIS 93
+ + + E + C S P I+
Sbjct: 118 SCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTIT 158
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 35.6 bits (82), Expect = 8e-04
Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 13/82 (15%)
Query: 12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVA 71
D L I N S E D G + R+ + T+ V P I
Sbjct: 65 DKTNGALRIYNVSKE-DRGDYYMRM----LHETEDQWKITMEVYEMVSKPMIY------- 112
Query: 72 TEGRAIELVCSTSGGSPDPQIS 93
E L C G D ++
Sbjct: 113 WECSNATLTCEVLEG-TDVELK 133
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 35.3 bits (81), Expect = 8e-04
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 13/77 (16%)
Query: 12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVA 71
D+ L I N + D ++E + + + VL P I
Sbjct: 56 DTVSGSLTIYNLTSS-DEDEYEMESPNITD-----TMKFFLYVLEMVSKPMIY------- 102
Query: 72 TEGRAIELVCSTSGGSP 88
E L C G+
Sbjct: 103 WECSNATLTCEVLEGTD 119
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 34.5 bits (79), Expect = 0.001
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP 60
G L I N+ E D+G + CR++ G D ++ V P
Sbjct: 67 HISEGDVSLTIENSV-ESDSGLYCCRVEIPGWFNDQKVTF-SLQVKPELVP 115
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 34.0 bits (78), Expect = 0.002
Identities = 5/43 (11%), Positives = 13/43 (30%)
Query: 51 TVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ + P + + G + +C+ SP +
Sbjct: 2 PLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLV 44
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 34.8 bits (80), Expect = 0.002
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 9/76 (11%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
I A+ D+G++ C+ + S + V + V E I
Sbjct: 56 YFIDAATVN-DSGEYRCQ-----TNLSTLSDPVQLEVHIGWLLLQAPR---WVFKEEDPI 106
Query: 78 ELVCSTSGGSPDPQIS 93
L C + + +++
Sbjct: 107 HLRCHSWKNTALHKVT 122
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 35.0 bits (80), Expect = 0.002
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANP 69
R SG L + E + G++ C + + L P +
Sbjct: 76 RLKSGDASLRLPGIQLE-EAGEYRCEVVVT------PLKAQGTVQLEVVASPASRLLLDQ 128
Query: 70 VATEGRAIELVCSTSGGSPDPQISVT 95
V + + +C +SG P+ I++T
Sbjct: 129 VGMKENEDKYMCESSGFYPEA-INIT 153
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 35.0 bits (80), Expect = 0.002
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 10/78 (12%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
+S+ + D G + C SQ VT++ + + +
Sbjct: 292 AFVSSVARN-DTGYYTCS------SSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEF 344
Query: 78 ELVCSTSGGSPDPQISVT 95
PQI T
Sbjct: 345 CFSVR---FKAYPQIRCT 359
Score = 34.6 bits (79), Expect = 0.002
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
++I + G++ S ++ ++TV++ +
Sbjct: 105 MVILKMTET-QAGEYLLF---IQSEATNYTILFTVSIR---NTLLYTLRRPYFRKMENQD 157
Query: 78 ELVCSTSGGSPDPQIS 93
LVC S P+P +
Sbjct: 158 ALVC-ISESVPEPIVE 172
Score = 32.7 bits (74), Expect = 0.009
Identities = 3/46 (6%), Positives = 10/46 (21%)
Query: 48 QVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ T + G + + C + ++
Sbjct: 216 RECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLT 261
Score = 31.2 bits (70), Expect = 0.030
Identities = 8/86 (9%), Positives = 18/86 (20%), Gaps = 14/86 (16%)
Query: 12 DSGRYDLII----SNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGA 67
D ++ +N S + + ++ L P + A
Sbjct: 6 DLPVIKCVLINHKNNDSSVGKSSSYPMVSESPED---------LGCALRPQSSGTVYEAA 56
Query: 68 NPVATEGRAIELVCSTSGGSPDPQIS 93
+I L +
Sbjct: 57 AVEVDVSASITLQVLVD-APGNISCL 81
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 33.7 bits (77), Expect = 0.002
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP 58
R + +S+ S D G++ C L + + +TVL P
Sbjct: 65 RASWHELSISVSDVS-LSDEGQYTCSL----FTMPVKTSKAYLTVLGVP 108
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 34.5 bits (79), Expect = 0.002
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
I A+ + D+G++ C+ + S + V + V E I
Sbjct: 56 YFIDAATVD-DSGEYRCQ-----TQLSTLSDPVQLEVHIGWLLLQAPR---WVFKEEDPI 106
Query: 78 ELVCSTSGGSPDPQIS 93
L C + + +++
Sbjct: 107 HLRCHSWKNTALHKVT 122
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 33.4 bits (76), Expect = 0.004
Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANP 69
+ + + + N + +D G ++C + ++ V VL + ++
Sbjct: 60 HHSANQLSITVPNVT-LQDEGVYKCLH----YSDSVSTKEVKVIVLATMKGEFCRYPSHW 114
Query: 70 VATE 73
E
Sbjct: 115 RPLE 118
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 33.8 bits (77), Expect = 0.004
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 25/82 (30%)
Query: 12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVA 71
DSG Y++ + + +G + ++ + +L P I
Sbjct: 72 DSGTYNVTVYST-----------------NGTRILNKALDLRILEMVSKPMIY------- 107
Query: 72 TEGRAIELVCSTSGGSPDPQIS 93
E L C G D ++
Sbjct: 108 WECSNATLTCEVLEG-TDVELK 128
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 33.8 bits (77), Expect = 0.004
Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 9/76 (11%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
S + G++ C + + PP+ + + EG
Sbjct: 51 TEFKVDSDD-QWGEYSCV--FLPE----PMGTANIQLHGPPRVKAVKS--SEHINEGETA 101
Query: 78 ELVCSTSGGSPDPQIS 93
LVC + P +
Sbjct: 102 MLVCKSESVPPVTDWA 117
Score = 27.7 bits (61), Expect = 0.54
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 10 RPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQD 44
GR +L I N + E D G++ C + GS Q
Sbjct: 140 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA 175
Score = 27.3 bits (60), Expect = 0.79
Identities = 7/28 (25%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 68 NPVATEGRAIELVCSTSGGSPDPQISVT 95
V G I L CS + S
Sbjct: 7 TTVEDLGSKILLTCSLN-DSATEVTGHR 33
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 33.6 bits (77), Expect = 0.004
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 19 IISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIE 78
I+ D G + C A + S ++ V ++ + G
Sbjct: 74 IVHGRKSRPDEGVYVCV--ARNYLGEAVSHDASLEVAILR-DDFRQNPSDVMVAVGEPAV 130
Query: 79 LVCSTSGGSPDPQIS 93
+ C G P+P IS
Sbjct: 131 MECQPPRGHPEPTIS 145
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 33.3 bits (75), Expect = 0.006
Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 18 LIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
L +++A+ E + G ++ ++ + + I+ + +
Sbjct: 54 LTVADATSE-NAGSYKVTVQDTDTMTS---VESEVFLMEEAELIVNITEPQHFYVSSQTD 109
Query: 77 IELVCS--TSGGSPDPQIS 93
+EL + SGG
Sbjct: 110 VELHATVKFSGGKTPADNY 128
Score = 32.5 bits (73), Expect = 0.013
Identities = 10/92 (10%), Positives = 24/92 (26%), Gaps = 9/92 (9%)
Query: 11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPV 70
D+ I + + NG + + + + + ++ +
Sbjct: 140 VIDTTQDITIQEFTAD-KNGVYTVK---VWGESEDSAASASTKIMLATMNVDQDVVESKT 195
Query: 71 ATEGRAIELVCSTSG-----GSPDPQISVTLQ 97
G I L S S P +++
Sbjct: 196 VALGNEISLNYVVSEDIVGDSSGMPNLTIKYN 227
Score = 24.8 bits (53), Expect = 6.5
Identities = 6/33 (18%), Positives = 9/33 (27%), Gaps = 1/33 (3%)
Query: 60 PPKISPG-ANPVATEGRAIELVCSTSGGSPDPQ 91
+S G L + +G P P
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPS 34
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 33.2 bits (76), Expect = 0.007
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 16/88 (18%)
Query: 7 IDYRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISP 65
+ + L I+ S + D G++ C G+ Q Y + + P P
Sbjct: 149 LKTYSTGRKMILEIAPTS-DNDFGRYNCTATNHIGT----RFQEYILALADVPSSPY--- 200
Query: 66 GANPVATE--GRAIEL---VCSTSGGSP 88
E ++ + GG P
Sbjct: 201 --GVKIIELSQTTAKVSFNKPDSHGGVP 226
Score = 29.0 bits (65), Expect = 0.17
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 61 PKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
P I N E + LVC G P P+I+
Sbjct: 2 PHIIQLKNETTYENGQVTLVCDAE-GEPIPEIT 33
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 32.9 bits (75), Expect = 0.007
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
+ +I + G+++C+ + G + +S + V P +S V G
Sbjct: 65 EFVIDHMDAN-KAGRYQCQYRI-GHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGEN 122
Query: 77 IELVCSTSGGSPD 89
I L CS++ D
Sbjct: 123 ISLTCSSAHIPFD 135
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 31.8 bits (72), Expect = 0.009
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54
+ + G LII N + D+G + CR++ G D ++ + +
Sbjct: 63 LKGDLNKGDVSLIIKNVT-LDDHGTYCCRIQFPGLMNDKKLEL-KLDI 108
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 31.2 bits (71), Expect = 0.018
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 51 TVTVLTPP---QPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
TV P + N + G +IE+ C+ S G+P PQI
Sbjct: 4 TVLERVAPTITGNLE-----NQTTSIGESIEVSCTAS-GNPPPQIM 43
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 31.4 bits (71), Expect = 0.025
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
L I NA FE D+G+++C+ ++ V + + A V EG+ +
Sbjct: 53 LNIVNAKFE-DSGEYKCQ--HQQV-----NESEPVYLEVFSDWLLLQASAEVV-MEGQPL 103
Query: 78 ELVCSTSGGSPDPQIS 93
L C ++
Sbjct: 104 FLRCHGWRNWDVYKVI 119
Score = 25.2 bits (55), Expect = 4.1
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 58 PQPPKIS--PGANPVATEGRAIELVCSTSGGSPDPQIS 93
PQ PK+S P N + +G + L C+ +
Sbjct: 2 PQKPKVSLNPPWNRI-FKGENVTLTCNGNNFFEVSSTK 38
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 30.4 bits (69), Expect = 0.026
Identities = 13/41 (31%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 54 VLTPPQPPKISPG-ANPVATEGRAIELVCSTSGGSPDPQIS 93
PP I G AN L C + G P P IS
Sbjct: 2 SSGSSGPPIILQGPANQTLAVDGTALLKCKAT-GDPLPVIS 41
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 31.5 bits (70), Expect = 0.032
Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 4/87 (4%)
Query: 9 YRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGAN 68
+ P +G + G + + + V PP+ +
Sbjct: 247 WGPWTGNGTFWLPRVQPF-QEGTYLATIH---LPYLQGQVTLELAVYKPPKVSLMPATLA 302
Query: 69 PVATEGRAIELVCSTSGGSPDPQISVT 95
A EL+C S P + V
Sbjct: 303 RAAPGEAPPELLCLVSHFYPSGGLEVE 329
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 30.7 bits (69), Expect = 0.034
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 1 MDKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP 60
K ++ + G L ISN + D+G + CR++ G D+ V + + P
Sbjct: 59 STKYTLLG-KVQFGEVSLTISNTN-RGDSGVYCCRIEVPGWFNDVKKNV-RLELRRALVP 115
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 30.7 bits (69), Expect = 0.054
Identities = 9/83 (10%), Positives = 22/83 (26%), Gaps = 10/83 (12%)
Query: 26 ERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANP---------VATEGRA 76
R + C + S + ++ P + ++
Sbjct: 188 PRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVT 247
Query: 77 IELVCSTSGGSP-DPQISVTLQV 98
++ C S DP++ + V
Sbjct: 248 PKVTCVVVDISKDDPEVQFSWFV 270
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 30.0 bits (68), Expect = 0.058
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 12 DSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGA 67
L I A + G + ++ GS +TV+ P PP +P
Sbjct: 59 SENGSKLTILAA-RQEHCGCYTLLVENKLGS----RQAQVNLTVVDKPDPPAGTPSG 110
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 30.2 bits (68), Expect = 0.061
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
I + ++E G++ C + +G+ S + V P +S +PV G
Sbjct: 59 QFPIPSITWE-HTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGN 117
Query: 77 IELVCSTSGG 86
+ L C +
Sbjct: 118 VTLQCDSQVA 127
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 30.2 bits (68), Expect = 0.069
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
L I G++ C + GS L S + P +S P + G
Sbjct: 53 VLFIPAMKRS-LAGRYRCSYQN-GSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGD 110
Query: 77 IELVCSTSGG 86
+ L C T G
Sbjct: 111 VTLQCQTRYG 120
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 29.9 bits (67), Expect = 0.086
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 26 ERDNGKFECRLKAAGSGQDL--HSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCST 83
+ G + C S L S + + + P +S P G ++ L CS+
Sbjct: 71 QDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSS 130
Query: 84 SGG 86
Sbjct: 131 RSS 133
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 29.8 bits (67), Expect = 0.098
Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 48 QVYTVTVLTPPQPPKISPG-ANPVATEGRAIELVCSTSGGSPDPQIS 93
+ + ++ V G + L CS P I
Sbjct: 9 SSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIK 55
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 29.7 bits (66), Expect = 0.11
Identities = 8/39 (20%), Positives = 9/39 (23%), Gaps = 1/39 (2%)
Query: 58 PQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL 96
P N G + L C G Q L
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVE-GRGLEQAGWIL 194
Score = 27.4 bits (60), Expect = 0.76
Identities = 11/77 (14%), Positives = 19/77 (24%), Gaps = 12/77 (15%)
Query: 18 LIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
L ++N + + + C + G V V P +
Sbjct: 214 LTLANVTSDLNRKNVTCWAENDVGR----AEVSVQVNVSFPASVQLHTAVEMHHWCI--- 266
Query: 77 IELVCSTSGGSPDPQIS 93
S G P P +
Sbjct: 267 ---PFSVD-GQPAPSLR 279
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 29.5 bits (66), Expect = 0.12
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 8/87 (9%)
Query: 8 DYRPDSGRYDLIISNASF------ERDNGKFECRLKAAGSGQDL--HSQVYTVTVLTPPQ 59
+ R + I SF G + CR S S + V +
Sbjct: 59 EDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHR 118
Query: 60 PPKISPGANPVATEGRAIELVCSTSGG 86
P + P+ G + L C +
Sbjct: 119 KPSLLAHPGPLVKSGERVILQCWSDIM 145
Score = 25.6 bits (56), Expect = 2.9
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 17 DLIISNASFERDNGKFECRLKAAGSGQDL--HSQVYTVTVLTPPQPPKISPGANPVATEG 74
+ I G + C + L S + V P + P +S P G
Sbjct: 175 NFSIGPMM-LALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAG 233
Query: 75 RAIELVCSTSGG 86
++ L CS+
Sbjct: 234 ESVTLSCSSRSS 245
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 29.4 bits (66), Expect = 0.13
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 50 YTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
V + PK+ EG + + C P IS
Sbjct: 9 ALVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVF-AYPSATIS 51
Score = 29.0 bits (65), Expect = 0.18
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI 63
L ++ S E D G + C GQ+ S + + P P I
Sbjct: 72 TPSASYLEVTPDS-ENDFGNYNCTAVNR-IGQE--SLEFILVQADTPSSPSI 119
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 29.0 bits (65), Expect = 0.13
Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 58 PQPPKISPG-ANPVATEGRAIELVCSTSGGSPDPQIS 93
PP I G N L C + GSP P I
Sbjct: 6 SGPPVIRQGPVNQTVAVDGTFVLSCVAT-GSPVPTIL 41
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 29.2 bits (65), Expect = 0.15
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 18 LIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKI 63
L I E D G+++C + S + ++ P
Sbjct: 165 LRIDPIKRE-DAGEYQCEISNPVSVR---RSNSIKLDIIFDPHHHHH 207
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 29.2 bits (65), Expect = 0.16
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 7/87 (8%)
Query: 13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVAT 72
R ++ N + C + G + + T+ PP+ PK N
Sbjct: 59 INRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGI-TIISGLPPEKPK-----NLSCI 112
Query: 73 EGRAIELVCS-TSGGSPDPQISVTLQV 98
++ C G + + TL+
Sbjct: 113 VNEGKKMRCEWDGGRETHLETNFTLKS 139
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 28.8 bits (64), Expect = 0.16
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
P ++I N + DNG F C +K D+ + VT+ + P
Sbjct: 76 PSWKDGSIVIHNLDYS-DNGTFTCDVKNPP---DIVGKTSQVTLYVFEKVP 122
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 28.7 bits (64), Expect = 0.16
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP 57
D +L++ + D+G + R + + S + L + TVTV T
Sbjct: 74 MDHKVCNLLLKDLK-PEDSGTYNFRFEISDSNRWLDVKGTTVTV-TT 118
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 28.9 bits (65), Expect = 0.19
Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 2/43 (4%)
Query: 55 LTPPQPPKIS-PGANPVATEGRAIELVCSTSGGSPDPQISVTL 96
T + EG ++ VC G P P I
Sbjct: 380 FTCRRARIRDRKAQQVFVDEGHTVQFVCRAD-GDPPPAILWLS 421
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 29.0 bits (65), Expect = 0.20
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT-PPQPPKISPGA-NPVATEGR 75
L IS E D + C + + VTVL P P ++ + +
Sbjct: 72 LAISGLEAE-DESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQAN 130
Query: 76 AIELVCSTSGGSPDPQISVT 95
LVC S P ++V
Sbjct: 131 KATLVCLISDFYPGA-VTVA 149
Score = 26.0 bits (57), Expect = 2.6
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT-PPQPPKISPGA-NPVATEGR 75
L ++ ++ + + C++ GS + + T + + P + P A + +T G
Sbjct: 180 LSLTPEQWK-SHRSYSCQVTHEGSTVE---KTVAPTECSASTKGPSVFPLAPSSKSTSGG 235
Query: 76 AIELVCSTSGGSPDPQISVT 95
L C P P ++V+
Sbjct: 236 TAALGCLVKDYFPQP-VTVS 254
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 28.3 bits (63), Expect = 0.22
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 51 TVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
T+TV PP IS A G ++ C P +I+
Sbjct: 8 TLTVNGPP---IISSTQTQHALHGEKGQIKCFIRSTPPPDRIA 47
Score = 24.1 bits (52), Expect = 8.0
Identities = 7/55 (12%), Positives = 14/55 (25%), Gaps = 5/55 (9%)
Query: 8 DYRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPP 61
+ L ISN + C + GS +++ +
Sbjct: 68 ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSD----TEIIRLKEQGSEMSG 118
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 28.1 bits (63), Expect = 0.26
Identities = 6/37 (16%), Positives = 8/37 (21%), Gaps = 1/37 (2%)
Query: 58 PQPPKISPG-ANPVATEGRAIELVCSTSGGSPDPQIS 93
I+ EG + C S S
Sbjct: 6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAM 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 28.6 bits (64), Expect = 0.29
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 58 PQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL 96
P + P A+ TEG A EL C S +S
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST--SLTSVSWIT 376
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.30
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 1 MDKVE--IIDYRPDSGRYDLIISNASFE 26
+ K++ + Y DS L I A+ E
Sbjct: 22 LKKLQASLKLYADDSAP-ALAI-KATME 47
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 27.9 bits (62), Expect = 0.37
Identities = 6/34 (17%), Positives = 9/34 (26%)
Query: 60 PPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
P + N G L C P++
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVH 36
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 27.9 bits (62), Expect = 0.50
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
I + + + G++ C ++ G S + + P +S +P+ T G++
Sbjct: 59 RFSIPSMTED-YAGRYRCYYRS-PVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKS 116
Query: 77 IELVCSTSGG 86
+ L+C +
Sbjct: 117 VTLLCQSRSP 126
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 27.5 bits (61), Expect = 0.54
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 60 PPKISPG-ANPVATEGRAIELVCSTSGGSPDPQIS 93
K+ ++G+ ++L CS G +P I
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVE-GMEEPDIQ 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.65
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 15/55 (27%)
Query: 12 DSGRYDLIISNA--SFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS 64
G++D +++ FE + L+ G D+H+ L +
Sbjct: 76 KVGQFDQVLNLCLTEFENC---Y---LE----GNDIHALAAK---LLQENDTTLV 117
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 27.5 bits (60), Expect = 0.68
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 55 LTPPQPPKIS-PGANPVATEGRAIELVCSTSGGSPDPQIS 93
L P + P + G ++ L C + +
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVH 40
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 26.9 bits (59), Expect = 0.69
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 1 MDKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ 59
+ ++ G L I N D G + C ++ G+ + + V P+
Sbjct: 60 NSRYQLKG-NISEGNVSLTIENTV-VGDGGPYCCVVEIPGAFHFVDYML-EVKPELVPR 115
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 27.2 bits (60), Expect = 0.76
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPK-ISPGANPVATEGRA 76
+ ISN + D G + C GS + +P + G AT
Sbjct: 76 ISISNITPA-DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT 134
Query: 77 IELVCSTSGGSPDPQISVT 95
+ C + G SP I++
Sbjct: 135 VSFTCESHGFSPRD-ITLK 152
Score = 25.3 bits (55), Expect = 3.6
Identities = 7/69 (10%), Positives = 18/69 (26%), Gaps = 5/69 (7%)
Query: 28 DNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGG 86
+ + C + G L + P +++ + + C
Sbjct: 191 VHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQ---QPVRAENQVNVTCQVRKF 247
Query: 87 SPDPQISVT 95
P + +T
Sbjct: 248 YPQR-LQLT 255
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 27.3 bits (59), Expect = 0.76
Identities = 10/85 (11%), Positives = 22/85 (25%), Gaps = 7/85 (8%)
Query: 11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPV 70
+S L ++ + D G + C +K + + V +S
Sbjct: 504 ENSRLVSLTLNLVT-RADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSL----- 557
Query: 71 ATEGRAIELVCSTSGGSPDPQISVT 95
+ A G + +
Sbjct: 558 -AKADAAPDEKVLDSGFREIENKAI 581
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 27.4 bits (61), Expect = 0.81
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 59 QPPKI-SPGANPVATEGRAIELVCSTSGGSPDPQISVTL 96
P I + +EGR EL C T P + L
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRT---PPMSSVKWLL 386
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 26.5 bits (59), Expect = 0.84
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 5/36 (13%)
Query: 58 PQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
+ V EG ++ VC Q++
Sbjct: 5 SGQIM-----HAVGEEGGHVKYVCKIENYDQSTQVT 35
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 27.0 bits (60), Expect = 1.0
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 59 QPPKIS-PGANPVATEGRAIELVCSTSGGSPDPQIS 93
Q P + P + V EG S G P P++S
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHIS-GFPVPEVS 38
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 26.8 bits (60), Expect = 1.1
Identities = 3/22 (13%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 2 DKVEI--IDYRPDSGRYDLIIS 21
++ + + D I+S
Sbjct: 140 RSRQVLLQGWEDFAEPVDRIVS 161
>2g38_B PPE family protein; protein-protein complex, structural genomics,
PSI, protein S initiative, TB structural genomics
consortium, TBSGC; 2.20A {Mycobacterium tuberculosis}
SCOP: a.25.4.2
Length = 198
Score = 26.6 bits (58), Expect = 1.2
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 51 TVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQ 91
++ LTP + P P A+ S+ + P+
Sbjct: 160 ALSKLTPWKAP--PPIAHSTVLVAPVSPSTASSRTDTLVPR 198
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 26.3 bits (59), Expect = 1.6
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 6 IIDYRPDSGRYDLIISN 22
+I+ + I+SN
Sbjct: 92 LIERAERGRPWHAIVSN 108
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 25.8 bits (57), Expect = 1.6
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 57 PPQPPKISPGANPV-ATEGRAIELVCSTSGGSPDPQIS 93
K P V A G + L C + +++
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCEVAQ--AQTEVT 43
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 26.4 bits (59), Expect = 1.6
Identities = 3/22 (13%), Positives = 6/22 (27%), Gaps = 2/22 (9%)
Query: 2 DKVEI--IDYRPDSGRYDLIIS 21
+ + D I+S
Sbjct: 114 RSKRVLLAGWEQFDEPVDRIVS 135
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo
sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A*
1fp5_A 1f6a_B 1g84_A
Length = 323
Score = 26.2 bits (57), Expect = 1.8
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 9/45 (20%)
Query: 51 TVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT 95
TV +L I+L+C SG +P I +T
Sbjct: 9 TVKILQSSCDGGGHFPPT--------IQLLCLVSGYTPGT-IQIT 44
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 26.0 bits (58), Expect = 1.8
Identities = 4/10 (40%), Positives = 6/10 (60%)
Query: 13 SGRYDLIISN 22
G +D+I S
Sbjct: 121 EGTFDVIFSA 130
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 26.1 bits (57), Expect = 1.8
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
L I +A D G++ R++ + +V V P
Sbjct: 90 LSIRDAR-MSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALTHRP 132
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 1.9
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 16/67 (23%)
Query: 2 DKVEIIDYRPDSGRYDLIISNAS--FERDNGKFECRLKAAG-SGQDLHSQVYTVTVLTPP 58
K ++ D+ + + + + S D K LK QDL P
Sbjct: 274 FK-QVTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQDL-----------PR 320
Query: 59 QPPKISP 65
+ +P
Sbjct: 321 EVLTTNP 327
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 26.0 bits (58), Expect = 1.9
Identities = 4/22 (18%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 2 DKVEI--IDYRPDSGRYDLIIS 21
+ E+ + D I+S
Sbjct: 122 RRKEVRIQGWEEFDEPVDRIVS 143
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 26.3 bits (57), Expect = 2.3
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 18 LIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISP 65
+ N + +RD GK+ C ++ G G ++++ P PP+++
Sbjct: 225 FNVVNTT-KRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLAS 272
>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31,
cell membrane, disulfide bond, glycoprotein,
glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A
{Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A*
3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*
Length = 875
Score = 25.9 bits (57), Expect = 2.3
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
Query: 12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS 64
+ Y L F + E + + + + +L +P ++
Sbjct: 780 ANKVYLLC----EFSVTQNRLEVNISQSTYKDPNNLAFNEIKILGTEEPSNVT 828
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 25.3 bits (55), Expect = 3.1
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 2 DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
D+V I D + + + + + D + C ++ G+ + QV +
Sbjct: 62 DRVSIKDN-QKNRTFTVTMEDLMKT-DADTYWCGIEKTGNDLGVTVQVTIDPAPVTQEET 119
Query: 62 KISP 65
SP
Sbjct: 120 SSSP 123
>2k7i_A UPF0339 protein ATU0232; protein of unknown function, swapped
dimer. PSI2, structural genomics, unknown function; NMR
{Agrobacterium tumefaciens str} SCOP: d.348.1.1
Length = 83
Score = 24.9 bits (54), Expect = 3.4
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 9 YRPDSGRYDLII-SNASFE---RDNGKFECRLKAAGSGQDLHSQVYT 51
+ SGR +L FE G++ R KA+ S+ Y
Sbjct: 8 HHHSSGRENLYFQGMYKFEIYQDKAGEYRFRFKASNGETMFSSEGYK 54
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 25.2 bits (55), Expect = 3.5
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 11 PDSGRYDLIISNASF 25
+ + DL+ +NA F
Sbjct: 91 KPAQKADLLYANAVF 105
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich
fold, jelly roll, sugar binding protein,
hydrolase-carbohydrate complex; HET: MES GOL; 1.80A
{Zobellia galactanivorans}
Length = 280
Score = 25.2 bits (55), Expect = 3.8
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 30 GKFECRLKAAGSG 42
G +EC +KA +
Sbjct: 108 GYYECEMKANKTF 120
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 25.3 bits (55), Expect = 4.1
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLH-----SQVYTVTVLTPPQPPKIS 64
RP ++ LI+ A+ + C +++ + L PPK+S
Sbjct: 66 RPSQEQFSLILELATPS-QTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVS 124
Query: 65 --PGANPVATEGRAIELVCSTSGGSPDP 90
+ + LVC G PD
Sbjct: 125 LFEPSKAEIANKQKATLVCLARGFFPDH 152
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 25.3 bits (55), Expect = 4.5
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 51 TVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT 95
P PK+ P + + + C G P +SVT
Sbjct: 118 VTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVT 162
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 25.2 bits (55), Expect = 4.9
Identities = 15/101 (14%), Positives = 25/101 (24%), Gaps = 17/101 (16%)
Query: 12 DSGRYDLI--ISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPK------- 62
SG Y L ++ S + C + S + + + P
Sbjct: 186 SSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELL 245
Query: 63 -------ISPGANPVATEGRAIELVCSTSGGSP-DPQISVT 95
P R E+ C S DP++
Sbjct: 246 GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFN 286
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 24.8 bits (54), Expect = 5.7
Identities = 3/24 (12%), Positives = 10/24 (41%)
Query: 70 VATEGRAIELVCSTSGGSPDPQIS 93
+ + I+L + D +++
Sbjct: 13 IQSTAEGIQLYSFVTYYVEDLKVN 36
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 24.6 bits (53), Expect = 7.1
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPK-----IS 64
+ D ++ +S E D+ + C + +TVL + +
Sbjct: 69 QFDDYHSEMNMSALELE-DSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLF 127
Query: 65 PGANPVATEGRAIELVCSTSGGSPDP 90
+ + LVC G PD
Sbjct: 128 EPSKAEIANKQKATLVCLARGFFPDH 153
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein
3; structural genomics, joint center for struct
genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 23.9 bits (51), Expect = 8.3
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 61 PKISPG-ANPVATEGRAIELVCSTSGGSPDPQISVT 95
P+I+ A G + CS + S D ++
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAA-SSSDSPMTFA 45
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 24.1 bits (51), Expect = 8.5
Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPV 70
P L++ + S D+G + C + V + K + +
Sbjct: 39 PQKHDKHLVLQDFSEVEDSGYYVCY---TPASNKNTYLYLKARVGSADDAKKDAAKKDDA 95
Query: 71 ATE 73
+
Sbjct: 96 KKD 98
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 24.3 bits (53), Expect = 8.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 9 YRPDSGRYDLIISN 22
+ GR+D+IISN
Sbjct: 255 FSEVKGRFDMIISN 268
>3ppu_A Glutathione-S-transferase; GST fold; HET: GSH; 2.30A
{Phanerochaete chrysosporium}
Length = 352
Score = 24.4 bits (53), Expect = 8.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 8 DYRPDSGRYDLIISNA 23
D+ P+ GRY L +S A
Sbjct: 70 DFTPEKGRYHLYVSYA 85
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 23.6 bits (51), Expect = 9.9
Identities = 5/44 (11%), Positives = 9/44 (20%), Gaps = 3/44 (6%)
Query: 51 TVTVLTPPQPPKISPG-ANPVATEGRAIELVCSTSGGSPDPQIS 93
+ G A + L C P ++
Sbjct: 4 GSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELC--RPWAEVR 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.133 0.387
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,548,742
Number of extensions: 82516
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 242
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.9 bits)