RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5866
(98 letters)
>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2
(ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 31.1 bits (69), Expect = 0.007
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 57 PPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL 96
PP+ ++ + G++ + C P +++ L
Sbjct: 1 PPRQVILTL-QPTLVAVGKSFTIECRVPTVEPLDSLTLFL 39
>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1
(VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 31.1 bits (69), Expect = 0.008
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 58 PQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL 96
P+ P+I G+ I + CS + P ++ + L
Sbjct: 2 PKDPEIHLS--GPLEAGKPITVKCSVADVYPFDRLEIDL 38
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 30.4 bits (67), Expect = 0.013
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 57 PPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISV 94
PP P IS T G L CS GSP + S
Sbjct: 2 PPSKPTIS--VPSSVTIGNRAVLTCSEHDGSPPSEYSW 37
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic
{Pseudoalteromonas carrageenovora [TaxId: 227]}
Length = 271
Score = 30.3 bits (67), Expect = 0.022
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVAT 72
SG S A+ + G +E R+K A + + + + ++ + +
Sbjct: 86 SGV---AKSRATG--NYGYYEARIKGASTFPGVSPAFW----MYSTIDRSLTKEGDVQYS 136
Query: 73 EGRAIELV 80
E +EL
Sbjct: 137 EIDVVELT 144
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 29.4 bits (65), Expect = 0.033
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKI 63
E + L I A E G + ++ GS +TV+ P PP
Sbjct: 45 EHMKVENSENGSKLTILAARQE-HCGCYTLLVENKLGS----RQAQVNLTVVDKPDPPAG 99
Query: 64 SP 65
+P
Sbjct: 100 TP 101
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 29.2 bits (64), Expect = 0.041
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 60 PPKISPGANPV-ATEGRAIELVCSTSGGSPDPQISV 94
PP P AT G L CS GSP + +
Sbjct: 2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTW 37
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 28.3 bits (62), Expect = 0.066
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55
+ ++I D G +EC + + VT+
Sbjct: 62 TNNLSIVILALRPS-DEGTYECVVLKYEKDAFKREHLAEVTLS 103
>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 95
Score = 28.3 bits (62), Expect = 0.067
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 57 PPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISV 94
P IS P ++CSTSGG P+P +S
Sbjct: 2 DFPTPSISDFEIP---TSNIRRIICSTSGGFPEPHLSW 36
>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 28.5 bits (62), Expect = 0.076
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 60 PPKISPGANPV-ATEGRAIELVCSTSGGSPDPQIS 93
PP++ + EG LVC + P +
Sbjct: 2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWA 36
>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 118
Score = 27.9 bits (61), Expect = 0.11
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT 56
D +L++ + E D+G + R + + S + L + TVTV T
Sbjct: 74 MDHKVCNLLLKDLKPE-DSGTYNFRFEISDSNRWLDVKGTTVTVTT 118
>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1
(ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 27.9 bits (61), Expect = 0.12
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 57 PPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL 96
P+ +++P G+ + L C GG+P Q++V L
Sbjct: 3 TPERVELAP-LPSWQPVGKQLTLRCQVEGGAPRAQLTVVL 41
>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon
constant domain 2, CH2-epsilon {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 27.8 bits (61), Expect = 0.12
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 55 LTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDP 90
TPP + + I+L+C SG +P
Sbjct: 2 FTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGT 37
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 27.5 bits (60), Expect = 0.13
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 60 PPKISPGANPV---ATEGRAIELVCSTSGGSPDPQISV 94
PP + + V A G+++ LVC G P+P +S
Sbjct: 3 PPTVQARQSIVNATANLGQSVTLVCDAD-GFPEPTMSW 39
>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 26.8 bits (58), Expect = 0.24
Identities = 3/24 (12%), Positives = 7/24 (29%)
Query: 70 VATEGRAIELVCSTSGGSPDPQIS 93
V++ C + I+
Sbjct: 13 VSSANEIDVRPCPLNPNEHKGTIT 36
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 26.0 bits (56), Expect = 0.53
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 57 PPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISV 94
P P +S + +A G + C +P +
Sbjct: 3 EPVPQYVSK--DMMAKAGDVTMIYCMYG-SNPMGYPNY 37
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 25.2 bits (54), Expect = 0.87
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 59 QPPKISPGANPVATEGRAIELVCSTSGGSPDPQI 92
QP + + A G + C S G P P +
Sbjct: 1 QPDWLDVITDTEADIGSDLRWSCVAS-GKPRPAV 33
>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 25.0 bits (53), Expect = 1.2
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 51 TVTVLTPPQPPKISPGANPVATEGRAIELVC 81
T+TV PP IS A G ++ C
Sbjct: 1 TLTVN---GPPIISSTQTQHALHGEKGQIKC 28
>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal
domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Length = 98
Score = 24.9 bits (54), Expect = 1.2
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 59 QPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97
+PP + + L C G P ++++T +
Sbjct: 2 RPPSVQVAKTTPFNTREPVMLACYVWGFYP-AEVTITWR 39
>d2k49a2 d.348.1.1 (A:1-58) Uncharacterized protein SO3888
{Shewanella oneidensis [TaxId: 70863]}
Length = 58
Score = 24.2 bits (53), Expect = 1.4
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYT 51
SG Y+L + N +F+ LKA L S++YT
Sbjct: 2 SGWYEL------SKSSNDQFKFVLKAGNGEVILTSELYT 34
>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding
Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 121
Score = 24.8 bits (53), Expect = 1.6
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV 54
+ P + L I +A D G++ R++ + +V V
Sbjct: 74 LLGDPQTKNCTLSIRDARMS-DAGRYFFRMEKGNIKWNYKYDQLSVNV 120
>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 24.6 bits (52), Expect = 1.6
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 58 PQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISV 94
P + + G + +C+ SP +
Sbjct: 1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVW 37
>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 99
Score = 24.6 bits (53), Expect = 1.7
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 60 PPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT 95
P+I + G+ L C + P P I +
Sbjct: 4 TPQIQVYSRHPPENGKPNILNCYVTQFHP-PHIEIQ 38
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 93
Score = 24.6 bits (52), Expect = 1.7
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 60 PPKI-SPGANPVATEGRAIELVCSTSGGSPDPQISV 94
PKI + G L G+PDP +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFI-GAPDPTATW 36
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS)
{Thermus thermophilus [TaxId: 274]}
Length = 272
Score = 24.9 bits (53), Expect = 1.8
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 1 MDKVEIIDYRPDSGRYDL 18
+ K E+ DY P G +
Sbjct: 18 IQKAELADYGPVRGTIVV 35
>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma
constant domain 2, CH2-gamma {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 116
Score = 24.6 bits (53), Expect = 1.9
Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 4/47 (8%)
Query: 54 VLTPPQPPKIS---PGANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97
+ T P+ + P ++ C S D V
Sbjct: 6 ICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDD-PEVQFS 51
>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 100
Score = 24.2 bits (52), Expect = 2.0
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 60 PPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQV 98
PKI + A G++ L C SG P I V L
Sbjct: 5 TPKIQVYSRHPAENGKSNFLNCYVSGFHP-SDIEVDLLK 42
>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), III [TaxId: 9606]}
Length = 89
Score = 24.1 bits (51), Expect = 2.1
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 59 QPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
Q P+ V E I L C + + +++
Sbjct: 8 QAPR------WVFKEEDPIHLRCHSWKNTALHKVT 36
>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal
domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}
Length = 100
Score = 23.8 bits (51), Expect = 2.6
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 59 QPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT 95
+ P+ + G+ L+C P P I++T
Sbjct: 2 EAPQATVFPKSPVLLGQPNTLICFVDNIFP-PVINIT 37
>d1jfma_ d.19.1.1 (A:) NK cell ligand RAE-1 beta {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 174
Score = 24.2 bits (52), Expect = 2.7
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 44 DLHSQVYTVTVLTPPQP 60
D HS +T+ P
Sbjct: 1 DAHSLRCNLTIKDPTPA 17
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 24.1 bits (51), Expect = 2.7
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 59 QPPKISPGANPVATEGRAIELVCSTSGGSPDPQI 92
QP I EG++ C S P +
Sbjct: 1 QPRFIVKPYGTEVGEGQSANFYCRVI-ASSPPVV 33
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing
endo-beta-galactosidase, GngC, catalytic domain
{Clostridium perfringens [TaxId: 1502]}
Length = 266
Score = 24.6 bits (52), Expect = 2.9
Identities = 9/48 (18%), Positives = 14/48 (29%)
Query: 19 IISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
+ G FE R K + +G H + V + S
Sbjct: 100 RNEWRGYTTKYGYFEIRAKLSNTGGGGHQAWWMVGMQDDTNDWFNSKQ 147
>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), IIb [TaxId: 9606]}
Length = 88
Score = 23.7 bits (50), Expect = 3.0
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 70 VATEGRAIELVCSTSGGSPDPQIS 93
EG I L C + P +++
Sbjct: 11 EFQEGETIVLRCHSWKDKPLVKVT 34
>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 23.8 bits (50), Expect = 3.3
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 63 ISPGANPVATEGRAIELVCSTSGGSPDPQISVT 95
I + G EL C + P ++
Sbjct: 7 IKRQSEHSILAGDPFELECPVKYCANRPHVTWC 39
>d2k8ea2 d.348.1.1 (A:75-126) Uncharacterized protein YegP
{Escherichia coli [TaxId: 562]}
Length = 52
Score = 22.7 bits (49), Expect = 3.5
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 29 NGKFECRLKAAGSGQDLHSQVYT 51
NGKF LKAA SQ+Y
Sbjct: 5 NGKFYFNLKAANHQIIGSSQMYA 27
>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 23.6 bits (49), Expect = 3.7
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 59 QPPKISPGANPV-ATEGRAIELVCSTSGGSPDPQISVT 95
+P +SP + G I+L+C+ +G
Sbjct: 1 RPVIVSPANETMEVDLGSQIQLICNVTG-QLSDIAYWK 37
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional
uracil-DNA glycosylase SMUG1 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 245
Score = 24.0 bits (52), Expect = 4.2
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 30 GKF-ECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGAN 68
G+F E R + A L ++ VTV P +P AN
Sbjct: 190 GRFSEQRARKA-----LMAEGIDVTVKGIMHPSPRNPQAN 224
>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal
domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}
Length = 101
Score = 23.4 bits (50), Expect = 4.3
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 60 PPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97
P+++ + G L+C SP P ++VT
Sbjct: 5 APEVTVLSRSPVNLGEPNILICFIDKFSP-PVVNVTWL 41
>d3bida1 d.348.1.1 (A:1-56) Uncharacterized protein NMB1088
{Neisseria meningitidis [TaxId: 487]}
Length = 56
Score = 22.7 bits (49), Expect = 4.3
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 25 FERDNGKFECRLKAAGSGQDLHSQVYT 51
++ G++ RLKAA + YT
Sbjct: 6 YKDAKGEYRWRLKAANHEIIAQGEGYT 32
>d2k49a1 d.348.1.1 (A:59-110) Uncharacterized protein SO3888
{Shewanella oneidensis [TaxId: 70863]}
Length = 52
Score = 22.7 bits (49), Expect = 4.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 29 NGKFECRLKAAGSGQDLHSQVYT 51
N K LKAA SQ+Y+
Sbjct: 5 NDKPYFNLKAANHQIIGTSQMYS 27
>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha
constant domain 1, CH1-alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 23.2 bits (49), Expect = 4.8
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 58 PQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQV 98
+ P I P P A + + C P ++VT
Sbjct: 3 ARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGK 43
>d2k7ia1 d.348.1.1 (A:1-62) Uncharacterized protein Atu0232
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 62
Score = 22.7 bits (49), Expect = 5.1
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 25 FERDNGKFECRLKAAGSGQDLHSQVYT 51
++ G++ R KA+ S+ Y
Sbjct: 7 YQDKAGEYRFRFKASNGETMFSSEGYK 33
>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL)
{Caenorhabditis elegans [TaxId: 6239]}
Length = 161
Score = 23.2 bits (50), Expect = 5.4
Identities = 6/45 (13%), Positives = 13/45 (28%)
Query: 48 QVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI 92
++ Q + G ++LV S +G +
Sbjct: 46 TIHLFDDERGLQETDNFAVRDGFVYYGSVVKLVDSVTGIALPRLR 90
>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG,
alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 23.1 bits (49), Expect = 6.2
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 60 PPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ 97
PP + ++ G +L C P I V
Sbjct: 3 PPSVVVTSHQ--APGEKKKLKCLAYDFYPGK-IDVHWT 37
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 22.8 bits (48), Expect = 6.7
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 10/44 (22%)
Query: 52 VTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT 95
+ V + + A G +EL C S D +
Sbjct: 1 IMVTKQLE--------DTTAYCGERVELECEVSE--DDANVKWF 34
>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat
domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 120
Score = 23.1 bits (48), Expect = 7.9
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 40 GSGQDLHSQVYTVTVLTPPQPPKIS 64
GS + + V L+ P PP +
Sbjct: 1 GSSGSSGMEPHKVVPLSKPHPPVVG 25
>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 97
Score = 22.7 bits (47), Expect = 8.1
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 62 KISPGANPVATEGRAIELVCSTSGGSPDPQISV 94
I P + + G + +C +G + D IS
Sbjct: 4 DIVP-SQGEISVGESKFFLCQVAGDAKDKDISW 35
>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal
domain {Human (Homo sapiens), HLA-DQ group [TaxId:
9606]}
Length = 97
Score = 22.3 bits (47), Expect = 9.4
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 60 PPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQV 98
P ++ + LVCS + P QI V
Sbjct: 2 EPTVTISPSRTEALNHHNLLVCSVTDFYP-GQIKVRWFR 39
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 22.7 bits (48), Expect = 9.6
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 4 VEIIDYRPDSGRYDLIISNAS 24
V Y P + +ISNAS
Sbjct: 133 VNQDKYDPKA---HHVISNAS 150
>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal
domain {Human (Homo sapiens), HLA-DQ group [TaxId:
9606]}
Length = 99
Score = 22.2 bits (47), Expect = 9.7
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 58 PQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQV 98
+ P+++ + T G+ L+C P P +++T
Sbjct: 3 NEVPEVTVFSKSPVTLGQPNTLICLVDNIFP-PVVNITWLS 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.133 0.387
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 373,703
Number of extensions: 15318
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 55
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)