Query psy5867
Match_columns 287
No_of_seqs 213 out of 404
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 20:02:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03256 APC10: Anaphase-promo 100.0 1.2E-59 2.6E-64 418.4 15.0 161 19-286 26-193 (193)
2 cd08366 APC10 APC10 subunit of 100.0 7.1E-58 1.5E-62 388.6 15.7 104 21-147 1-104 (139)
3 KOG3437|consensus 100.0 1.3E-55 2.9E-60 384.8 12.1 169 9-287 11-184 (184)
4 cd08159 APC10-like APC10-like 100.0 8.9E-49 1.9E-53 329.4 13.5 124 27-180 5-129 (129)
5 cd08667 APC10-ZZEF1 APC10/DOC1 100.0 7.7E-47 1.7E-51 318.3 13.6 126 26-181 4-131 (131)
6 cd08666 APC10-HECTD3 APC10-lik 100.0 6.8E-46 1.5E-50 313.3 14.0 125 26-179 7-133 (134)
7 cd08365 APC10-like1 APC10-like 100.0 1.3E-45 2.7E-50 311.0 12.8 123 27-179 6-130 (131)
8 COG5156 DOC1 Anaphase-promotin 100.0 1.9E-43 4.1E-48 304.4 11.8 145 18-185 21-166 (189)
9 cd08665 APC10-CUL7 APC10-like 100.0 4.9E-43 1.1E-47 295.1 12.8 125 27-181 5-131 (131)
10 cd08664 APC10-HERC2 APC10-like 100.0 5.5E-38 1.2E-42 269.8 12.8 128 21-179 22-151 (152)
11 COG5156 DOC1 Anaphase-promotin 100.0 9.3E-32 2E-36 232.1 6.9 150 115-270 7-167 (189)
12 cd08667 APC10-ZZEF1 APC10/DOC1 100.0 5.4E-31 1.2E-35 222.2 9.5 107 149-265 20-131 (131)
13 cd08159 APC10-like APC10-like 100.0 2.8E-30 6E-35 217.4 9.4 104 150-264 21-129 (129)
14 cd08365 APC10-like1 APC10-like 100.0 4.6E-29 9.9E-34 210.5 10.0 105 150-264 22-131 (131)
15 cd08665 APC10-CUL7 APC10-like 100.0 2.4E-28 5.2E-33 206.0 9.8 106 150-265 21-131 (131)
16 cd08666 APC10-HECTD3 APC10-lik 99.9 6E-26 1.3E-30 192.1 10.3 103 150-263 26-133 (134)
17 cd08664 APC10-HERC2 APC10-like 99.9 1.2E-22 2.6E-27 175.0 9.5 119 129-264 28-152 (152)
18 cd08366 APC10 APC10 subunit of 99.5 1.5E-14 3.2E-19 123.5 7.6 125 135-265 4-139 (139)
19 KOG3437|consensus 99.5 1.8E-14 3.9E-19 126.8 7.2 52 132-183 108-159 (184)
20 PF03256 APC10: Anaphase-promo 99.3 1.2E-12 2.5E-17 117.3 2.6 91 130-226 26-127 (193)
21 PF00754 F5_F8_type_C: F5/8 ty 98.6 4E-06 8.6E-11 66.0 15.3 118 29-174 2-126 (129)
22 cd00057 FA58C Substituted upda 98.0 0.0003 6.4E-09 57.4 14.3 124 26-181 11-143 (143)
23 KOG1428|consensus 97.3 0.00058 1.2E-08 75.9 8.1 129 20-183 2882-3014(3738)
24 PF07738 Sad1_UNC: Sad1 / UNC- 96.1 0.17 3.6E-06 42.1 12.2 120 37-182 5-134 (135)
25 PF07738 Sad1_UNC: Sad1 / UNC- 95.8 0.28 6E-06 40.8 12.4 72 193-266 60-134 (135)
26 PF06201 PITH: PITH domain; I 95.4 0.34 7.3E-06 42.0 11.9 119 37-182 20-151 (152)
27 PF06201 PITH: PITH domain; I 92.4 0.98 2.1E-05 39.2 8.7 91 166-265 51-150 (152)
28 cd00057 FA58C Substituted upda 89.7 8.8 0.00019 30.9 11.5 92 155-265 45-143 (143)
29 PF00055 Laminin_N: Laminin N- 88.5 1.5 3.3E-05 40.6 6.9 57 37-119 54-117 (237)
30 PF00754 F5_F8_type_C: F5/8 ty 88.2 6.9 0.00015 30.2 9.6 79 154-248 36-116 (129)
31 smart00136 LamNT Laminin N-ter 76.6 3.8 8.2E-05 38.1 4.4 56 37-118 58-118 (238)
32 PF01834 XRCC1_N: XRCC1 N term 63.3 15 0.00033 32.4 5.0 69 26-124 7-77 (153)
33 PRK10154 hypothetical protein; 55.4 71 0.0015 27.5 7.5 51 210-266 83-133 (134)
34 KOG3512|consensus 40.1 56 0.0012 34.0 5.4 46 38-104 95-147 (592)
35 KOG0908|consensus 30.4 4.4E+02 0.0095 25.6 9.3 117 40-185 145-270 (288)
36 PF13987 YedD: YedD-like prote 22.7 35 0.00076 28.4 0.5 16 48-63 10-25 (111)
37 PRK10154 hypothetical protein; 22.5 2.1E+02 0.0046 24.7 5.2 78 85-182 55-133 (134)
38 PF01700 Orbi_VP3: Orbivirus V 22.0 1.1E+02 0.0024 33.6 4.2 72 40-116 751-829 (890)
39 smart00231 FA58C Coagulation f 21.9 4.4E+02 0.0094 21.4 13.4 39 28-67 13-52 (139)
40 PF05506 DUF756: Domain of unk 21.4 2.1E+02 0.0046 21.9 4.7 36 194-234 46-81 (89)
No 1
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=100.00 E-value=1.2e-59 Score=418.44 Aligned_cols=161 Identities=52% Similarity=0.995 Sum_probs=122.2
Q ss_pred CceeecCcceEEEeccCCCCCcc-ccccCCCCceeccCCCCCcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEE
Q psy5867 19 RIREVGSQAIWSLSSCKPGFGVD-QLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQD 97 (287)
Q Consensus 19 ~~~~i~~~a~W~vSS~K~g~gv~-~L~d~~~~tyWQSdg~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~ 97 (287)
.++|||++|.|+|||+|+|+||+ +|||+|++|||||||+|||+|+|+|. |++.|+.
T Consensus 26 ~~~dI~~~a~w~vSS~K~g~gv~~~LrD~~~~TyWQSDG~qpH~I~i~f~-----------------------k~v~I~~ 82 (193)
T PF03256_consen 26 GLRDIGSLAVWSVSSCKPGFGVAELLRDGSTETYWQSDGSQPHWITIQFH-----------------------KRVIISS 82 (193)
T ss_dssp SCEE-GGGSEEEES--BTTBSCHGHCHSS-TT--EE--SSSSEEEEEEEE-----------------------EEEEE-E
T ss_pred eeeeccCceEEEEecCCCCCCchheeeCCChhHhhccCCCCCEEEEEEEc-----------------------CCcEEEE
Confidence 38999999999999999999999 77899999999999999999999999 9999999
Q ss_pred EEEEeecCCCCCcCcceEEEeecCCcCCceeeeEEEccCCCceEEEEeccCCCCceeEEEEEEEEEeeeecCccceeEEE
Q psy5867 98 ICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQI 177 (287)
Q Consensus 98 i~i~~~~~~DeSYtPs~I~i~~G~~~~dL~e~~~v~~~~p~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthIrqI 177 (287)
|+|||||++||||||++|+|+||++++||+++++++|++|.||+.|++.
T Consensus 83 l~iyvd~~~DeSYtPs~I~V~aG~~~~dl~e~~~v~l~~p~GWv~i~l~------------------------------- 131 (193)
T PF03256_consen 83 LSIYVDYKQDESYTPSKISVRAGNSPHDLQEVKTVELEEPNGWVHIPLL------------------------------- 131 (193)
T ss_dssp EEEEEEHHHHGGGSEEEEEEEEESSTTT-EEEEEEEECC-EEEEEEE-B-------------------------------
T ss_pred EEEEEccCcCCCCCceEEEEEEeCCcCceEEEEEEEecCCCccEEEEeC-------------------------------
Confidence 9999999999999999999999999999999999999999999999883
Q ss_pred EEecCCCCCCCCccccceeeEeeeecCCCccCcceeeeeeccCCCCeEEEeccCCCCCceEEEEEEEEEeecccCCCcce
Q psy5867 178 KVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTH 257 (287)
Q Consensus 178 kIy~~~~~des~~fTSytpskISiraG~~~~Dl~ev~~~~l~eP~GWv~i~l~~~~~~~lr~~~lQi~Il~NHqNGrDTH 257 (287)
+..++++|||+|||+|++|||||||||
T Consensus 132 -----------------------------------------------------~~~~~~~r~~~iqI~I~~nhq~G~Dth 158 (193)
T PF03256_consen 132 -----------------------------------------------------DNRGNPLRCFFIQIAILSNHQNGKDTH 158 (193)
T ss_dssp -----------------------------------------------------STTTSBEEEEEEEEEEEEECCC-SS-E
T ss_pred -----------------------------------------------------CCCCCcEEEEEEEEEEEecccCCCCCc
Confidence 456689999999999999999999999
Q ss_pred eeeeEEeccCCCC------CCCccccceeeeeecc
Q psy5867 258 MRQIKVYSPVQQH------PSTMFTTVECQQYAVI 286 (287)
Q Consensus 258 IR~ikI~gP~~~~------~~~~ftt~~f~~~~~i 286 (287)
|||||||||++.. .+..|+|++|+||++|
T Consensus 159 iR~iki~gp~~~~~~~~~~~~~~~~s~~~~~~~~~ 193 (193)
T PF03256_consen 159 IRGIKIYGPRPSESSSANDDFHGFSSVEFAMFSTI 193 (193)
T ss_dssp ESEEEEEEE--------------------------
T ss_pred eeeEEEECCCCccccccccccCCCchHHhEecccC
Confidence 9999999999862 3457999999999986
No 2
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=100.00 E-value=7.1e-58 Score=388.62 Aligned_cols=104 Identities=65% Similarity=1.183 Sum_probs=102.3
Q ss_pred eeecCcceEEEeccCCCCCccccccCCCCceeccCCCCCcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEEEE
Q psy5867 21 REVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICI 100 (287)
Q Consensus 21 ~~i~~~a~W~vSS~K~g~gv~~L~d~~~~tyWQSdg~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i~i 100 (287)
+|||++|.|+|||+|+|+||++|+|+|++|||||||+|||+|+|+|. |++.|++|+|
T Consensus 1 ~ei~~~a~w~vSS~k~g~gv~~L~D~~~~TyWQSDg~qPH~I~i~f~-----------------------k~~~i~~l~i 57 (139)
T cd08366 1 REIGSLAVWSLSSAKPGNGVDQLRDDSLDTYWQSDGPQPHLINIQFS-----------------------KKTDISAVAL 57 (139)
T ss_pred CccccCEEEEEEeCCCCCCHHHhcCCCCCccCCCCCCCCEEEEEEec-----------------------CCcEEEEEEE
Confidence 68999999999999999999999999999999999999999999999 9999999999
Q ss_pred EeecCCCCCcCcceEEEeecCCcCCceeeeEEEccCCCceEEEEecc
Q psy5867 101 YTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKD 147 (287)
Q Consensus 101 ~~~~~~DeSYtPs~I~i~~G~~~~dL~e~~~v~~~~p~Gwv~i~~~~ 147 (287)
|+||++||||||++|+|++|++++||+|++++++++|.||+.|++.+
T Consensus 58 ~vd~~~DeSYtP~~I~v~~G~~~~dl~e~~~v~l~~p~Gwv~i~l~~ 104 (139)
T cd08366 58 YLDYKLDESYTPSKISIRAGTSPHDLQEVRTVELEEPNGWVHIPLED 104 (139)
T ss_pred EEccCCCCCCCCEEEEEEEECCcCchhheEEEEcCCCCEEEEEEccC
Confidence 99999999999999999999999999999999999999999999975
No 3
>KOG3437|consensus
Probab=100.00 E-value=1.3e-55 Score=384.81 Aligned_cols=169 Identities=51% Similarity=0.878 Sum_probs=147.8
Q ss_pred CCchHHHhcCCceeecCcceEEEeccCCCCCccccccCCCCceeccCCCCCcEEEEEEcccccccchhhhcccCceeeee
Q psy5867 9 KDPVMEERLGRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQ 88 (287)
Q Consensus 9 ~~~~~~~~~~~~~~i~~~a~W~vSS~K~g~gv~~L~d~~~~tyWQSdg~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~ 88 (287)
-++..++..+.+||||.+|.|++|| |+|+++|+|+|++|||||||.|||.+.|+|.
T Consensus 11 ~~~~el~~ss~~rev~~~A~ws~sS---g~pvd~l~Ddn~etyWqSdG~~PH~i~I~F~--------------------- 66 (184)
T KOG3437|consen 11 GRKIELCLSSFVREVGLLALWSLSS---GFPVDNLRDDNPETYWQSDGSQPHLINIQFH--------------------- 66 (184)
T ss_pred CCceeEEechhHHHHHHHhhccccc---CCChHHhhcCChhHheecCCCCCeEEEEEEE---------------------
Confidence 3677788899999999999999999 9999999999999999999999999999999
Q ss_pred eeeeeeEEEEEEEeecCCCCCcCcceEEEeecCCcCCceeeeEEEccCCCceEEEEeccCCCCceeEEEEEEEEEeeeec
Q psy5867 89 FRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQN 168 (287)
Q Consensus 89 ~~k~~~i~~i~i~~~~~~DeSYtPs~I~i~~G~~~~dL~e~~~v~~~~p~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qf 168 (287)
|+|.|+.|+||++|++||||||++|+|++|++++||++
T Consensus 67 --K~~~I~~v~if~~f~~DeSYtPs~i~I~~G~g~~dl~~---------------------------------------- 104 (184)
T KOG3437|consen 67 --KRVDIQYVVIFLDFKQDESYTPSKIKIRAGNGFNDLWE---------------------------------------- 104 (184)
T ss_pred --eEEEEEEEEEEEEEecccccCceeEEEEecCChhheee----------------------------------------
Confidence 99999999999999999999999887776666655544
Q ss_pred CccceeEEEEEecCCCCCCCCccccceeeEeeeecCCCccCcceeeeeeccCCCCeEEEeccCCCCCceEEEEEEEEEee
Q psy5867 169 GRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMS 248 (287)
Q Consensus 169 GrdthIrqIkIy~~~~~des~~fTSytpskISiraG~~~~Dl~ev~~~~l~eP~GWv~i~l~~~~~~~lr~~~lQi~Il~ 248 (287)
+..++|.||.||+.+++.|++++|+|||+|||+|++
T Consensus 105 --------------------------------------------~~~~el~ep~GWv~lp~~d~~~~~lr~~~iqi~i~~ 140 (184)
T KOG3437|consen 105 --------------------------------------------IQSVELVEPKGWVHLPVLDNDDKPLRCFMIQIAILS 140 (184)
T ss_pred --------------------------------------------eeEEEEecCCceEEEeeccCCCCceEEEEEEEEeec
Confidence 444566667777777777777889999999999999
Q ss_pred cccCCCcceeeeeEEeccCCCC-----CCCccccceeeeeeccC
Q psy5867 249 NHQNGRDTHMRQIKVYSPVQQH-----PSTMFTTVECQQYAVIR 287 (287)
Q Consensus 249 NHqNGrDTHIR~ikI~gP~~~~-----~~~~ftt~~f~~~~~iR 287 (287)
|||||||||+||||||+|.-+. ...+++|++|.++.+||
T Consensus 141 NHq~GkDthvR~iri~~p~~e~~~~~~e~~p~~~i~~~~~~~ir 184 (184)
T KOG3437|consen 141 NHQNGKDTHVRHIRIYAPSIEGPYYKIEWFPLTTIDFVFQNAIR 184 (184)
T ss_pred ccccCccceeEEEEEecccccCccceehcccCCcHHHHHHhhhC
Confidence 9999999999999999995432 12349999999999987
No 4
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=100.00 E-value=8.9e-49 Score=329.35 Aligned_cols=124 Identities=31% Similarity=0.554 Sum_probs=120.4
Q ss_pred ceEEEeccCCCCCccccccCCCCceeccCCCCC-cEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEEEEEeecC
Q psy5867 27 AIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLP-HLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYK 105 (287)
Q Consensus 27 a~W~vSS~K~g~gv~~L~d~~~~tyWQSdg~~p-H~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i~i~~~~~ 105 (287)
|.|+|||+|+ |+++|+|+|++|||||||+|| |||+++|. |+|.|++|+||++|
T Consensus 5 a~w~vSS~k~--gv~~L~D~~~~tyWQSdG~qphh~i~l~f~-----------------------k~v~i~~l~i~~~~- 58 (129)
T cd08159 5 ASIEVSSNPL--PVSRLTDGNYDTYWQSDGSQGSHWIRLFMK-----------------------KDVLIRVLAIFVDM- 58 (129)
T ss_pred EEEEEecCcc--cHHHhcCCCCCccCCCCCCCCCEEEEEEEc-----------------------CCcEEEEEEEEecC-
Confidence 8999999999 999999999999999999999 89999999 99999999999999
Q ss_pred CCCCcCcceEEEeecCCcCCceeeeEEEccCCCceEEEEeccCCCCceeEEEEEEEEEeeeecCccceeEEEEEe
Q psy5867 106 LDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVY 180 (287)
Q Consensus 106 ~DeSYtPs~I~i~~G~~~~dL~e~~~v~~~~p~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthIrqIkIy 180 (287)
+||||||++|+|++|++++||+|+++|++++|.||+.|.. +.+++|++|||+|+.|||+|||||||+|+||
T Consensus 59 ~DeSYtP~~I~V~~G~~~~dL~e~~~v~l~~p~Gwv~i~~----~~~~~~~~iqI~I~~nhqnG~DthiRgikI~ 129 (129)
T cd08159 59 ADSSYMPSLVVVYGGHSPSDLRELKDVNIRPSNGWVALLE----DDTLKCPYIEIRIKRCRSDGIDTRIRGLRLL 129 (129)
T ss_pred CCCCcCCcEEEEEecCCHHHhheeEEEEecCCCceEEEEc----CCcEEEEEEEEEEHHhccCCccceeeEEEeC
Confidence 8999999999999999999999999999999999999864 4689999999999999999999999999997
No 5
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=100.00 E-value=7.7e-47 Score=318.32 Aligned_cols=126 Identities=28% Similarity=0.504 Sum_probs=119.9
Q ss_pred cceEEEeccCCCCCccccccCCCCceeccCCCC-CcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEEEEEeec
Q psy5867 26 QAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQL-PHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDY 104 (287)
Q Consensus 26 ~a~W~vSS~K~g~gv~~L~d~~~~tyWQSdg~~-pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i~i~~~~ 104 (287)
...|+|||+|+ |+++|+|+|++|||||||+| ||||+++|. |++.|++|+||++
T Consensus 4 ~~~~~vSS~k~--gv~~L~D~~~~TYWQSDG~q~pH~I~i~f~-----------------------~~v~i~~l~i~v~- 57 (131)
T cd08667 4 YAYIEVSSNSA--DIDRMTDGETSTYWQSDGSARSHWIRLKMK-----------------------PDVVLRHLSIAVA- 57 (131)
T ss_pred EEEEEEEcChh--hhHHhhcCCCCccCccCCCCCCeEEEEEec-----------------------CCeEEEEEEEEEc-
Confidence 46799999998 89999999999999999996 999999999 9999999999999
Q ss_pred CCCCCcCcceEEEeecCCcCCceeeeEEEcc-CCCceEEEEeccCCCCceeEEEEEEEEEeeeecCccceeEEEEEec
Q psy5867 105 KLDESYTPSRVSVRAGTNFNDLQEIEVVDLN-EPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYS 181 (287)
Q Consensus 105 ~~DeSYtPs~I~i~~G~~~~dL~e~~~v~~~-~p~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthIrqIkIy~ 181 (287)
++||||||++|+|+||++++||+|+++|+++ +|.||+.|+. +.++++|+|||+|+.|||+|||||||+|+|++
T Consensus 58 ~~DeSYtPs~I~I~~G~~~~dL~e~~~v~l~~~~~Gwv~l~~----~~~~~~~~iqI~I~~nhqnG~DthIRgiki~G 131 (131)
T cd08667 58 ATDQSYMPQQVTVSVGRSASSLQEVRDVHIPSNVTGYVTLLE----NANISYLVVQINIKRCHSDGCDTRIHGLKTIG 131 (131)
T ss_pred CCCCCcCCcEEEEEecCCHhhheeeEEEEcCCCCceeEEEEc----CCceEEEEEEEEeHHhccCCccceeeEEEEcC
Confidence 8899999999999999999999999999997 6999999854 57899999999999999999999999999986
No 6
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=100.00 E-value=6.8e-46 Score=313.34 Aligned_cols=125 Identities=30% Similarity=0.507 Sum_probs=119.0
Q ss_pred cceEEEeccCCCCCccccccCCCCceeccCCCC-CcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEEEEEeec
Q psy5867 26 QAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQL-PHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDY 104 (287)
Q Consensus 26 ~a~W~vSS~K~g~gv~~L~d~~~~tyWQSdg~~-pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i~i~~~~ 104 (287)
...|+|||+|+|||+++|+|++++|||||||+| ||||+|+|. |++.|++|+||++|
T Consensus 7 ~~~isvSS~k~g~gv~~L~D~~~~tyWQSdG~qgpH~I~l~f~-----------------------~~v~i~~l~i~v~~ 63 (134)
T cd08666 7 VESIEVSSYTDDFNVSCLTDGDPDTYWESDGSQGQHWIRLHMK-----------------------KGTIIKKLLLTVDA 63 (134)
T ss_pred EEEEEEEcCCCCCCHHHhccCCCCccEecCCCCCCeEEEEEEC-----------------------CCcEeeEEEEEecC
Confidence 578999999999999999999999999999999 899999999 99999999999999
Q ss_pred CCCCCcCcceEEEeecCCcCCceeeeEEEccCC-CceEEEEeccCCCCceeEEEEEEEEEeeeecCccceeEEEEE
Q psy5867 105 KLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEP-SGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKV 179 (287)
Q Consensus 105 ~~DeSYtPs~I~i~~G~~~~dL~e~~~v~~~~p-~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthIrqIkI 179 (287)
+||||||++|+|++|+ ++||+|+++|++++| .|||.| ++ +...+++||||.|+.|||+|||||||+|+|
T Consensus 64 -~DeSYtP~~I~V~~G~-~~dL~ei~~V~i~~~~~g~V~i-l~---~~~~~~~~iqI~I~~nhqnG~DthIRgiKI 133 (134)
T cd08666 64 -TDDNYMPKRVAVYGGE-GDNLKKLNDVSIDETLIGDVCI-LE---DMTTHLPVIEIRIKECKDEGIDVRIRGIKI 133 (134)
T ss_pred -CCCCcCCcEEEEEecC-ccChhheEEEEeCCCCCCeEEE-ec---CCceEeEEEEEEeHHhccCCccceeeEEEe
Confidence 7999999999999999 999999999999996 999998 43 467788899999999999999999999997
No 7
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=100.00 E-value=1.3e-45 Score=310.96 Aligned_cols=123 Identities=28% Similarity=0.525 Sum_probs=118.0
Q ss_pred ceEEEeccCCCCCccccccCCCCceeccCCCC-CcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEEEEEeecC
Q psy5867 27 AIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQL-PHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYK 105 (287)
Q Consensus 27 a~W~vSS~K~g~gv~~L~d~~~~tyWQSdg~~-pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i~i~~~~~ 105 (287)
..|+|||+|+ |+++|+|+|++|||||||+| ||||+|+|. |++.|++|+||+|+
T Consensus 6 ~~i~vSS~k~--gv~~L~D~~~~tyWQSDG~q~pH~I~i~f~-----------------------k~v~i~~l~l~vd~- 59 (131)
T cd08365 6 ESIEVSSNPA--DASRLTDGNTSTYWQSDGSQGSHWIRLKMK-----------------------PDVLVRHLSLAVDA- 59 (131)
T ss_pred eEEEEEcCch--hHHHhhcCCCCceEccCCCCCCEEEEEEEc-----------------------CCcEEEEEEEEecC-
Confidence 6799999998 99999999999999999999 699999999 99999999999996
Q ss_pred CCCCcCcceEEEeecCCcCCceeeeEEEccCC-CceEEEEeccCCCCceeEEEEEEEEEeeeecCccceeEEEEE
Q psy5867 106 LDESYTPSRVSVRAGTNFNDLQEIEVVDLNEP-SGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKV 179 (287)
Q Consensus 106 ~DeSYtPs~I~i~~G~~~~dL~e~~~v~~~~p-~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthIrqIkI 179 (287)
+||||||++|+|++|++++||+|++++++++| .|||+| + ++.+++++||||.|+.|||+|||||||+|+|
T Consensus 60 ~DeSYtP~~I~V~~G~~~~dL~e~~~v~v~~~~~g~v~l-l---~~~~~~~~~iqI~I~~nhqnG~DthiRgikI 130 (131)
T cd08365 60 TDSSYMPQRVVVAGGRSASNLQELRDVNIPPSVTGYVTL-L---EDATISQPYIEIRIKRCRSDGIDTRIHGLRI 130 (131)
T ss_pred CCCCCCCcEEEEEecCCHHHheeEEEEEccCCCceeEEE-c---cCCceeeEEEEEEEHHHccCCccceeeEEEe
Confidence 79999999999999999999999999999999 999987 3 3678999999999999999999999999997
No 8
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-43 Score=304.40 Aligned_cols=145 Identities=41% Similarity=0.784 Sum_probs=139.8
Q ss_pred CCceeecCcceEEEeccCCCCCccccccCCCCceeccCCCCCcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEE
Q psy5867 18 GRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQD 97 (287)
Q Consensus 18 ~~~~~i~~~a~W~vSS~K~g~gv~~L~d~~~~tyWQSdg~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~ 97 (287)
.++.+||+||.|++||.|.|+.+..|+|+|.+|||||||.|||.|.|.|. |++.|+.
T Consensus 21 a~~inv~~La~w~~SSfK~g~p~r~~lddn~dtyWqsDg~qPH~i~I~F~-----------------------kr~~I~~ 77 (189)
T COG5156 21 ARMINVTHLAEWRLSSFKRGHPLRELLDDNMDTYWQSDGVQPHSIQISFD-----------------------KRRYIQS 77 (189)
T ss_pred cceecchhheeeeecccccCCcHHHHhhcchhhhhccCCCCCceEEEEEe-----------------------EEEeeee
Confidence 45899999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEeecCCCCCcCcceEEEeecCCcCCceeeeEEEccCCCceEEEEeccC-CCCceeEEEEEEEEEeeeecCccceeEE
Q psy5867 98 ICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDI-HDKPIRTYMIQIAVMSNHQNGRDTHMRQ 176 (287)
Q Consensus 98 i~i~~~~~~DeSYtPs~I~i~~G~~~~dL~e~~~v~~~~p~Gwv~i~~~~~-~d~~l~~f~iQi~I~~n~qfGrdthIrq 176 (287)
++||++|.+|||||||+|.|+||.++.|+.++.+|++.+|+|||++++.+. .|+.++|.+||+.|.+|||+|||+|+|.
T Consensus 78 v~lfls~t~DeSYtPs~i~v~aG~~~~D~r~~~~vev~ep~Gwv~l~v~d~~~d~LL~c~~I~v~i~~NHq~GKDsHvR~ 157 (189)
T COG5156 78 VQLFLSFTQDESYTPSKIGVRAGLTREDVREISSVEVVEPEGWVTLSVADKREDDLLKCIYILVVINSNHQEGKDSHVRH 157 (189)
T ss_pred ehhhhhhhcccccCcceeEEeccCChhhheeEEEEEEEcCCceEEEEecccCcCCceeEEEEEEEEecCcccCcccceee
Confidence 999999999999999999999999999999999999999999999999874 5679999999999999999999999999
Q ss_pred EEEecCCCC
Q psy5867 177 IKVYSPVQQ 185 (287)
Q Consensus 177 IkIy~~~~~ 185 (287)
|+||.|-..
T Consensus 158 ikiy~ps~e 166 (189)
T COG5156 158 IKIYEPSTE 166 (189)
T ss_pred EEEeccCCc
Confidence 999999753
No 9
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=100.00 E-value=4.9e-43 Score=295.09 Aligned_cols=125 Identities=25% Similarity=0.437 Sum_probs=115.4
Q ss_pred ceEEEeccCCCCCccccccCCCCceeccCCCC-CcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEEEEEeecC
Q psy5867 27 AIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQL-PHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYK 105 (287)
Q Consensus 27 a~W~vSS~K~g~gv~~L~d~~~~tyWQSdg~~-pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i~i~~~~~ 105 (287)
...+|||.+ +|+++|+|+|++|||||||+| ||||+|+|. |++.|++|+||++ +
T Consensus 5 ~~~~vSsn~--~~~~~L~D~~~~tyWQSdG~q~pH~I~i~f~-----------------------k~v~I~~l~i~v~-~ 58 (131)
T cd08665 5 EKVEVSSNP--HRANKLTDGNPKTYWESNGSTGSHYINIHMH-----------------------RGVVIRQLYMLVA-S 58 (131)
T ss_pred EEEEEEcCc--ccHHHhhcCCCCceEccCCCCCCeEEEEEEC-----------------------CCcEEEEEEEEec-C
Confidence 345899998 599999999999999999985 999999999 9999999999998 8
Q ss_pred CCCCcCcceEEEeecCCcCCce-eeeEEEccCCCceEEEEeccCCCCceeEEEEEEEEEeeeecCccceeEEEEEec
Q psy5867 106 LDESYTPSRVSVRAGTNFNDLQ-EIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYS 181 (287)
Q Consensus 106 ~DeSYtPs~I~i~~G~~~~dL~-e~~~v~~~~p~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthIrqIkIy~ 181 (287)
+||||||++|+|++|++++||+ |+++|++++|.|||.+ ++ +.....++|||+|+.|||+|||||||+|+||+
T Consensus 59 ~DeSYtPs~I~V~~G~~~~dL~~e~~~V~~~~~~g~v~l-l~---~~~~~~~~iqI~I~~nhqnG~DthIRgikI~G 131 (131)
T cd08665 59 EDSSYMPARVVVLGGDSPSCITTELNAVNVSPTASRVVL-LE---NMTRFWPIIQIRIKRCQQGGIDTRVRGLEILG 131 (131)
T ss_pred CCCCcCCeeEEEEecCCHHHhhheeEEEEccCCcceEEE-cc---cCcccceEEEEEEhhhcccCccceeeEEEecC
Confidence 9999999999999999999997 9999999999999986 53 34456679999999999999999999999986
No 10
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=100.00 E-value=5.5e-38 Score=269.82 Aligned_cols=128 Identities=25% Similarity=0.407 Sum_probs=116.8
Q ss_pred eeecC-cceEEEeccCCCCCccccccCCCCceeccCCCCC-cEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEE
Q psy5867 21 REVGS-QAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLP-HLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDI 98 (287)
Q Consensus 21 ~~i~~-~a~W~vSS~K~g~gv~~L~d~~~~tyWQSdg~~p-H~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i 98 (287)
++.+. -..-+|||. ++|+++|+|+ ++|||||||+|| |||+++|. |++.|++|
T Consensus 22 ~~~~~c~~~~~VSS~--~~~~~~L~D~-~~TYWQSdG~q~~HwI~l~~~-----------------------~~v~I~~L 75 (152)
T cd08664 22 DDWSRCVRSLTVSSN--ENQAKRLIDG-SGSYWQSSGSQGKHWIRLELH-----------------------PDVLIHSL 75 (152)
T ss_pred HHHHhheeEEEEEcC--cccHHHhcCC-CCCeeccCCCCCceEEEEEEC-----------------------CCcEEEEE
Confidence 44443 456789999 5899999999 999999999997 99999999 99999999
Q ss_pred EEEeecCCCCCcCcceEEEeecCCcCCceeeeEEEccCCCceEEEEeccCCCCceeEEEEEEEEEeeeecCccceeEEEE
Q psy5867 99 CIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIK 178 (287)
Q Consensus 99 ~i~~~~~~DeSYtPs~I~i~~G~~~~dL~e~~~v~~~~p~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthIrqIk 178 (287)
+||++ ++||||||++|+|++|++++||+|+.+|+++++.|||.+.. +.+.++++|||+|+.||++|+|||||+|+
T Consensus 76 ~i~vd-~~DeSY~Ps~I~V~~G~~~~~L~el~~V~i~~~~~~v~Ll~----~~~~~~~~IqI~I~~ch~~GiDt~Irglk 150 (152)
T cd08664 76 KIIVD-PADSSYMPSLVVVSGGDSLNSLKELKTINVNATDTLVTLLQ----DVKEYYRYIEIAIKQCRNNGIDCKIHGLN 150 (152)
T ss_pred EEEec-CCCCCcCCceEEEEecCChhhhheeEEEEcCCCCceEEecc----CCCeeeEEEEEEhHhhhhCCCcceeeEEE
Confidence 99999 78999999999999999999999999999999999997732 45566679999999999999999999999
Q ss_pred E
Q psy5867 179 V 179 (287)
Q Consensus 179 I 179 (287)
|
T Consensus 151 I 151 (152)
T cd08664 151 I 151 (152)
T ss_pred e
Confidence 7
No 11
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.3e-32 Score=232.08 Aligned_cols=150 Identities=24% Similarity=0.467 Sum_probs=131.8
Q ss_pred EEEeecCCcCCceeeeEEEccCCCceEEEEecc------CCCCceeEEEE----EEEEEeeeecCccceeEEEEEecCCC
Q psy5867 115 VSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKD------IHDKPIRTYMI----QIAVMSNHQNGRDTHMRQIKVYSPVQ 184 (287)
Q Consensus 115 I~i~~G~~~~dL~e~~~v~~~~p~Gwv~i~~~~------~~d~~l~~f~i----Qi~I~~n~qfGrdthIrqIkIy~~~~ 184 (287)
...+.-.+..-|..-+.+++.+.+-|...+++- ..|+++.+||. | ++.+.+.|.|++.|..+.+|..+.
T Consensus 7 ~q~~~hq~~e~~dsa~~inv~~La~w~~SSfK~g~p~r~~lddn~dtyWqsDg~q-PH~i~I~F~kr~~I~~v~lfls~t 85 (189)
T COG5156 7 LQHMFHQGIEILDSARMINVTHLAEWRLSSFKRGHPLRELLDDNMDTYWQSDGVQ-PHSIQISFDKRRYIQSVQLFLSFT 85 (189)
T ss_pred HHHHHhcCeeeccccceecchhheeeeecccccCCcHHHHhhcchhhhhccCCCC-CceEEEEEeEEEeeeeehhhhhhh
Confidence 333334444445556778888888899887775 35889999997 6 899999999999999999999999
Q ss_pred CCCCCccccceeeEeeeecCCCccCcceeeeeeccCCCCeEEEeccCCC-CCceEEEEEEEEEeecccCCCcceeeeeEE
Q psy5867 185 QHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIH-DKPIRTYMIQIAVMSNHQNGRDTHMRQIKV 263 (287)
Q Consensus 185 ~des~~fTSytpskISiraG~~~~Dl~ev~~~~l~eP~GWv~i~l~~~~-~~~lr~~~lQi~Il~NHqNGrDTHIR~ikI 263 (287)
+|| ||||+++.||||++++|+.++..+++.||+||+++++.|.+ +..|+|.+|||.|++|||||||||+|+|||
T Consensus 86 ~De-----SYtPs~i~v~aG~~~~D~r~~~~vev~ep~Gwv~l~v~d~~~d~LL~c~~I~v~i~~NHq~GKDsHvR~iki 160 (189)
T COG5156 86 QDE-----SYTPSKIGVRAGLTREDVREISSVEVVEPEGWVTLSVADKREDDLLKCIYILVVINSNHQEGKDSHVRHIKI 160 (189)
T ss_pred ccc-----ccCcceeEEeccCChhhheeEEEEEEEcCCceEEEEecccCcCCceeEEEEEEEEecCcccCcccceeeEEE
Confidence 999 89999999999999999999999999999999999999875 558999999999999999999999999999
Q ss_pred eccCCCC
Q psy5867 264 YSPVQQH 270 (287)
Q Consensus 264 ~gP~~~~ 270 (287)
|.|..+.
T Consensus 161 y~ps~e~ 167 (189)
T COG5156 161 YEPSTEE 167 (189)
T ss_pred eccCCcc
Confidence 9999763
No 12
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=99.97 E-value=5.4e-31 Score=222.21 Aligned_cols=107 Identities=22% Similarity=0.312 Sum_probs=99.1
Q ss_pred CCCceeEEEE----EEEEEeeeecCccceeEEEEEecCCCCCCCCccccceeeEeeeecCCCccCcceeeeeecc-CCCC
Q psy5867 149 HDKPIRTYMI----QIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLN-EPSG 223 (287)
Q Consensus 149 ~d~~l~~f~i----Qi~I~~n~qfGrdthIrqIkIy~~~~~des~~fTSytpskISiraG~~~~Dl~ev~~~~l~-eP~G 223 (287)
.|++..+||. |-+|.++++|.|++.|++|.+|.+ ..|| ||||++|+||||++++||.|+.+++++ +|.|
T Consensus 20 ~D~~~~TYWQSDG~q~pH~I~i~f~~~v~i~~l~i~v~-~~De-----SYtPs~I~I~~G~~~~dL~e~~~v~l~~~~~G 93 (131)
T cd08667 20 TDGETSTYWQSDGSARSHWIRLKMKPDVVLRHLSIAVA-ATDQ-----SYMPQQVTVSVGRSASSLQEVRDVHIPSNVTG 93 (131)
T ss_pred hcCCCCccCccCCCCCCeEEEEEecCCeEEEEEEEEEc-CCCC-----CcCCcEEEEEecCCHhhheeeEEEEcCCCCce
Confidence 3678888887 568999999999999999999999 7899 899999999999999999999999997 7999
Q ss_pred eEEEeccCCCCCceEEEEEEEEEeecccCCCcceeeeeEEec
Q psy5867 224 WVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYS 265 (287)
Q Consensus 224 Wv~i~l~~~~~~~lr~~~lQi~Il~NHqNGrDTHIR~ikI~g 265 (287)
|+.|.. +.+++||+|||+|++|||||||||||||||||
T Consensus 94 wv~l~~----~~~~~~~~iqI~I~~nhqnG~DthIRgiki~G 131 (131)
T cd08667 94 YVTLLE----NANISYLVVQINIKRCHSDGCDTRIHGLKTIG 131 (131)
T ss_pred eEEEEc----CCceEEEEEEEEeHHhccCCccceeeEEEEcC
Confidence 999953 36799999999999999999999999999997
No 13
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=99.96 E-value=2.8e-30 Score=217.41 Aligned_cols=104 Identities=21% Similarity=0.357 Sum_probs=93.9
Q ss_pred CCceeEEEE----EEE-EEeeeecCccceeEEEEEecCCCCCCCCccccceeeEeeeecCCCccCcceeeeeeccCCCCe
Q psy5867 150 DKPIRTYMI----QIA-VMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEPSGW 224 (287)
Q Consensus 150 d~~l~~f~i----Qi~-I~~n~qfGrdthIrqIkIy~~~~~des~~fTSytpskISiraG~~~~Dl~ev~~~~l~eP~GW 224 (287)
|++..+||. | + +.++.+|.|++.|+.+++|.++ .|| ||||++|+|++|++++||.|++++++++|.||
T Consensus 21 D~~~~tyWQSdG~q-phh~i~l~f~k~v~i~~l~i~~~~-~De-----SYtP~~I~V~~G~~~~dL~e~~~v~l~~p~Gw 93 (129)
T cd08159 21 DGNYDTYWQSDGSQ-GSHWIRLFMKKDVLIRVLAIFVDM-ADS-----SYMPSLVVVYGGHSPSDLRELKDVNIRPSNGW 93 (129)
T ss_pred CCCCCccCCCCCCC-CCEEEEEEEcCCcEEEEEEEEecC-CCC-----CcCCcEEEEEecCCHHHhheeEEEEecCCCce
Confidence 556667775 4 4 4566889999999999999999 899 89999999999999999999999999999999
Q ss_pred EEEeccCCCCCceEEEEEEEEEeecccCCCcceeeeeEEe
Q psy5867 225 VKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVY 264 (287)
Q Consensus 225 v~i~l~~~~~~~lr~~~lQi~Il~NHqNGrDTHIR~ikI~ 264 (287)
+.|... .+++|++|||+|++||||||||||||||||
T Consensus 94 v~i~~~----~~~~~~~iqI~I~~nhqnG~DthiRgikI~ 129 (129)
T cd08159 94 VALLED----DTLKCPYIEIRIKRCRSDGIDTRIRGLRLL 129 (129)
T ss_pred EEEEcC----CcEEEEEEEEEEHHhccCCccceeeEEEeC
Confidence 999643 389999999999999999999999999997
No 14
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=99.96 E-value=4.6e-29 Score=210.49 Aligned_cols=105 Identities=22% Similarity=0.331 Sum_probs=96.4
Q ss_pred CCceeEEEE----EEEEEeeeecCccceeEEEEEecCCCCCCCCccccceeeEeeeecCCCccCcceeeeeeccCC-CCe
Q psy5867 150 DKPIRTYMI----QIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEP-SGW 224 (287)
Q Consensus 150 d~~l~~f~i----Qi~I~~n~qfGrdthIrqIkIy~~~~~des~~fTSytpskISiraG~~~~Dl~ev~~~~l~eP-~GW 224 (287)
|++..+||. |=+|.++++|.|++.|+.|++|.++ .|| ||||++|+||+|++++||.|+.++++++| .||
T Consensus 22 D~~~~tyWQSDG~q~pH~I~i~f~k~v~i~~l~l~vd~-~De-----SYtP~~I~V~~G~~~~dL~e~~~v~v~~~~~g~ 95 (131)
T cd08365 22 DGNTSTYWQSDGSQGSHWIRLKMKPDVLVRHLSLAVDA-TDS-----SYMPQRVVVAGGRSASNLQELRDVNIPPSVTGY 95 (131)
T ss_pred cCCCCceEccCCCCCCEEEEEEEcCCcEEEEEEEEecC-CCC-----CCCCcEEEEEecCCHHHheeEEEEEccCCCcee
Confidence 667778887 5469999999999999999999995 888 89999999999999999999999999999 999
Q ss_pred EEEeccCCCCCceEEEEEEEEEeecccCCCcceeeeeEEe
Q psy5867 225 VKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVY 264 (287)
Q Consensus 225 v~i~l~~~~~~~lr~~~lQi~Il~NHqNGrDTHIR~ikI~ 264 (287)
+.| + ++.+++|++|||+|++|||||||||||||||.
T Consensus 96 v~l-l---~~~~~~~~~iqI~I~~nhqnG~DthiRgikI~ 131 (131)
T cd08365 96 VTL-L---EDATISQPYIEIRIKRCRSDGIDTRIHGLRIL 131 (131)
T ss_pred EEE-c---cCCceeeEEEEEEEHHHccCCccceeeEEEeC
Confidence 988 3 34589999999999999999999999999984
No 15
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=99.95 E-value=2.4e-28 Score=206.04 Aligned_cols=106 Identities=20% Similarity=0.256 Sum_probs=95.7
Q ss_pred CCceeEEEE----EEEEEeeeecCccceeEEEEEecCCCCCCCCccccceeeEeeeecCCCccCcc-eeeeeeccCCCCe
Q psy5867 150 DKPIRTYMI----QIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQ-EIEVVDLNEPSGW 224 (287)
Q Consensus 150 d~~l~~f~i----Qi~I~~n~qfGrdthIrqIkIy~~~~~des~~fTSytpskISiraG~~~~Dl~-ev~~~~l~eP~GW 224 (287)
|++..+||. |-+|.++++|.|++.|+.+.+|.+ ..|+ ||||++|+||+|++++||+ |+..+++++|.||
T Consensus 21 D~~~~tyWQSdG~q~pH~I~i~f~k~v~I~~l~i~v~-~~De-----SYtPs~I~V~~G~~~~dL~~e~~~V~~~~~~g~ 94 (131)
T cd08665 21 DGNPKTYWESNGSTGSHYINIHMHRGVVIRQLYMLVA-SEDS-----SYMPARVVVLGGDSPSCITTELNAVNVSPTASR 94 (131)
T ss_pred cCCCCceEccCCCCCCeEEEEEECCCcEEEEEEEEec-CCCC-----CcCCeeEEEEecCCHHHhhheeEEEEccCCcce
Confidence 677888997 569999999999999999999997 8899 8999999999999999997 9999999999999
Q ss_pred EEEeccCCCCCceEEEEEEEEEeecccCCCcceeeeeEEec
Q psy5867 225 VKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYS 265 (287)
Q Consensus 225 v~i~l~~~~~~~lr~~~lQi~Il~NHqNGrDTHIR~ikI~g 265 (287)
+.+ +++. ....++|||+|++|||||||||||||||||
T Consensus 95 v~l-l~~~---~~~~~~iqI~I~~nhqnG~DthIRgikI~G 131 (131)
T cd08665 95 VVL-LENM---TRFWPIIQIRIKRCQQGGIDTRVRGLEILG 131 (131)
T ss_pred EEE-cccC---cccceEEEEEEhhhcccCccceeeEEEecC
Confidence 996 5542 223369999999999999999999999997
No 16
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=99.93 E-value=6e-26 Score=192.12 Aligned_cols=103 Identities=21% Similarity=0.263 Sum_probs=93.2
Q ss_pred CCceeEEEE----EEEEEeeeecCccceeEEEEEecCCCCCCCCccccceeeEeeeecCCCccCcceeeeeeccCC-CCe
Q psy5867 150 DKPIRTYMI----QIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEP-SGW 224 (287)
Q Consensus 150 d~~l~~f~i----Qi~I~~n~qfGrdthIrqIkIy~~~~~des~~fTSytpskISiraG~~~~Dl~ev~~~~l~eP-~GW 224 (287)
|+...+||. |=+|.++++|.|++.|+.+.+|.++ .|+ ||+|++|+||+|+ ++||+|+.++++++| .||
T Consensus 26 D~~~~tyWQSdG~qgpH~I~l~f~~~v~i~~l~i~v~~-~De-----SYtP~~I~V~~G~-~~dL~ei~~V~i~~~~~g~ 98 (134)
T cd08666 26 DGDPDTYWESDGSQGQHWIRLHMKKGTIIKKLLLTVDA-TDD-----NYMPKRVAVYGGE-GDNLKKLNDVSIDETLIGD 98 (134)
T ss_pred cCCCCccEecCCCCCCeEEEEEECCCcEeeEEEEEecC-CCC-----CcCCcEEEEEecC-ccChhheEEEEeCCCCCCe
Confidence 567778887 4478999999999999999999998 788 7999999999999 999999999999997 999
Q ss_pred EEEeccCCCCCceEEEEEEEEEeecccCCCcceeeeeEE
Q psy5867 225 VKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKV 263 (287)
Q Consensus 225 v~i~l~~~~~~~lr~~~lQi~Il~NHqNGrDTHIR~ikI 263 (287)
+.| +++ ...++++|||+|++|||||||||||||||
T Consensus 99 V~i-l~~---~~~~~~~iqI~I~~nhqnG~DthIRgiKI 133 (134)
T cd08666 99 VCI-LED---MTTHLPVIEIRIKECKDEGIDVRIRGIKI 133 (134)
T ss_pred EEE-ecC---CceEeEEEEEEeHHhccCCccceeeEEEe
Confidence 999 443 45678899999999999999999999998
No 17
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=99.88 E-value=1.2e-22 Score=175.03 Aligned_cols=119 Identities=18% Similarity=0.290 Sum_probs=98.0
Q ss_pred eeEEEccCCCceEEEEeccCCCCceeEEEE----EEEEEeeeecCccceeEEEEEecCCCCCCCCccccceeeEeeeecC
Q psy5867 129 IEVVDLNEPSGWVKIPIKDIHDKPIRTYMI----QIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAG 204 (287)
Q Consensus 129 ~~~v~~~~p~Gwv~i~~~~~~d~~l~~f~i----Qi~I~~n~qfGrdthIrqIkIy~~~~~des~~fTSytpskISiraG 204 (287)
++.++|.....++.= | .|+ ..+||. |=+|.++.+|.+++.|+.+++|.+ ..|+ ||+|++|+||+|
T Consensus 28 ~~~~~VSS~~~~~~~-L---~D~-~~TYWQSdG~q~~HwI~l~~~~~v~I~~L~i~vd-~~De-----SY~Ps~I~V~~G 96 (152)
T cd08664 28 VRSLTVSSNENQAKR-L---IDG-SGSYWQSSGSQGKHWIRLELHPDVLIHSLKIIVD-PADS-----SYMPSLVVVSGG 96 (152)
T ss_pred eeEEEEEcCcccHHH-h---cCC-CCCeeccCCCCCceEEEEEECCCcEEEEEEEEec-CCCC-----CcCCceEEEEec
Confidence 355666544333321 1 245 778887 545888999999999999999999 7888 799999999999
Q ss_pred CCccCcceeeeeeccCCCCeEEEeccCCCCCceEEE--EEEEEEeecccCCCcceeeeeEEe
Q psy5867 205 TNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTY--MIQIAVMSNHQNGRDTHMRQIKVY 264 (287)
Q Consensus 205 ~~~~Dl~ev~~~~l~eP~GWv~i~l~~~~~~~lr~~--~lQi~Il~NHqNGrDTHIR~ikI~ 264 (287)
++++||+|+..+++.+|.||+.+. . +++.| +|||+|.+|||||+|||||||||.
T Consensus 97 ~~~~~L~el~~V~i~~~~~~v~Ll-~-----~~~~~~~~IqI~I~~ch~~GiDt~IrglkI~ 152 (152)
T cd08664 97 DSLNSLKELKTINVNATDTLVTLL-Q-----DVKEYYRYIEIAIKQCRNNGIDCKIHGLNII 152 (152)
T ss_pred CChhhhheeEEEEcCCCCceEEec-c-----CCCeeeEEEEEEhHhhhhCCCcceeeEEEeC
Confidence 999999999999999999998773 2 24555 999999999999999999999983
No 18
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=99.54 E-value=1.5e-14 Score=123.46 Aligned_cols=125 Identities=42% Similarity=0.700 Sum_probs=112.5
Q ss_pred cCCCceEEEEeccC------CCCceeEEEE----EEEEEeeeecCccceeEEEEEecCCCCCCCCccccceeeEeeeecC
Q psy5867 135 NEPSGWVKIPIKDI------HDKPIRTYMI----QIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAG 204 (287)
Q Consensus 135 ~~p~Gwv~i~~~~~------~d~~l~~f~i----Qi~I~~n~qfGrdthIrqIkIy~~~~~des~~fTSytpskISiraG 204 (287)
...+-|...+.+.. .|++..+||. | ++.++++|.|++.|+.+.+|.++..|| ||||++|+|+||
T Consensus 4 ~~~a~w~vSS~k~g~gv~~L~D~~~~TyWQSDg~q-PH~I~i~f~k~~~i~~l~i~vd~~~De-----SYtP~~I~v~~G 77 (139)
T cd08366 4 GSLAVWSLSSAKPGNGVDQLRDDSLDTYWQSDGPQ-PHLINIQFSKKTDISAVALYLDYKLDE-----SYTPSKISIRAG 77 (139)
T ss_pred ccCEEEEEEeCCCCCCHHHhcCCCCCccCCCCCCC-CEEEEEEecCCcEEEEEEEEEccCCCC-----CCCCEEEEEEEE
Confidence 33445665555531 3677788887 7 999999999999999999999999999 899999999999
Q ss_pred CCccCcceeeeeeccCCCCeEEEeccCCC-CCceEEEEEEEEEeecccCCCcceeeeeEEec
Q psy5867 205 TNFNDLQEIEVVDLNEPSGWVKIPIKDIH-DKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYS 265 (287)
Q Consensus 205 ~~~~Dl~ev~~~~l~eP~GWv~i~l~~~~-~~~lr~~~lQi~Il~NHqNGrDTHIR~ikI~g 265 (287)
++++||.|+++++|++|.||+.|+|.+.+ ++|++|++|||+|++|||||||||||||||||
T Consensus 78 ~~~~dl~e~~~v~l~~p~Gwv~i~l~~~~~~~~~~~~~iqi~I~~nh~nG~DthiR~iki~g 139 (139)
T cd08366 78 TSPHDLQEVRTVELEEPNGWVHIPLEDNRDGKPLRTFFLQIAILSNHQNGRDTHIRQIKVYG 139 (139)
T ss_pred CCcCchhheEEEEcCCCCEEEEEEccCCCCCCeeEEEEEEEEEecccCCCCCcceeeeEecC
Confidence 99999999999999999999999999876 89999999999999999999999999999997
No 19
>KOG3437|consensus
Probab=99.52 E-value=1.8e-14 Score=126.85 Aligned_cols=52 Identities=60% Similarity=1.168 Sum_probs=49.6
Q ss_pred EEccCCCceEEEEeccCCCCceeEEEEEEEEEeeeecCccceeEEEEEecCC
Q psy5867 132 VDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPV 183 (287)
Q Consensus 132 v~~~~p~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthIrqIkIy~~~ 183 (287)
++|.+|.|||++++.++.+++++||+|||+|++|||+|||||+|+|+||+|.
T Consensus 108 ~el~ep~GWv~lp~~d~~~~~lr~~~iqi~i~~NHq~GkDthvR~iri~~p~ 159 (184)
T KOG3437|consen 108 VELVEPKGWVHLPVLDNDDKPLRCFMIQIAILSNHQNGKDTHVRHIRIYAPS 159 (184)
T ss_pred EEEecCCceEEEeeccCCCCceEEEEEEEEeecccccCccceeEEEEEeccc
Confidence 4678899999999999999999999999999999999999999999999995
No 20
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=99.28 E-value=1.2e-12 Score=117.25 Aligned_cols=91 Identities=29% Similarity=0.436 Sum_probs=72.4
Q ss_pred eEEEccCCCceEEEEeccC------C-CCceeEEEE----EEEEEeeeecCccceeEEEEEecCCCCCCCCccccceeeE
Q psy5867 130 EVVDLNEPSGWVKIPIKDI------H-DKPIRTYMI----QIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQ 198 (287)
Q Consensus 130 ~~v~~~~p~Gwv~i~~~~~------~-d~~l~~f~i----Qi~I~~n~qfGrdthIrqIkIy~~~~~des~~fTSytpsk 198 (287)
..+++.+.+-|...+.+.. . |++..+||. | +|.++++|.|++.|+.|++|.++..|+ ||+|++
T Consensus 26 ~~~dI~~~a~w~vSS~K~g~gv~~~LrD~~~~TyWQSDG~q-pH~I~i~f~k~v~I~~l~iyvd~~~De-----SYtPs~ 99 (193)
T PF03256_consen 26 GLRDIGSLAVWSVSSCKPGFGVAELLRDGSTETYWQSDGSQ-PHWITIQFHKRVIISSLSIYVDYKQDE-----SYTPSK 99 (193)
T ss_dssp SCEE-GGGSEEEES--BTTBSCHGHCHSS-TT--EE--SSS-SEEEEEEEEEEEEE-EEEEEEEHHHHG-----GGSEEE
T ss_pred eeeeccCceEEEEecCCCCCCchheeeCCChhHhhccCCCC-CEEEEEEEcCCcEEEEEEEEEccCcCC-----CCCceE
Confidence 4566677777886666541 3 788899998 6 899999999999999999999999999 899999
Q ss_pred eeeecCCCccCcceeeeeeccCCCCeEE
Q psy5867 199 VSVRAGTNFNDLQEIEVVDLNEPSGWVK 226 (287)
Q Consensus 199 ISiraG~~~~Dl~ev~~~~l~eP~GWv~ 226 (287)
|+|+||++++||++++++++++|.||+.
T Consensus 100 I~V~aG~~~~dl~e~~~v~l~~p~GWv~ 127 (193)
T PF03256_consen 100 ISVRAGNSPHDLQEVKTVELEEPNGWVH 127 (193)
T ss_dssp EEEEEESSTTT-EEEEEEEECC-EEEEE
T ss_pred EEEEEeCCcCceEEEEEEEecCCCccEE
Confidence 9999999999999999999999999993
No 21
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=98.59 E-value=4e-06 Score=66.01 Aligned_cols=118 Identities=17% Similarity=0.229 Sum_probs=88.8
Q ss_pred EEEeccCCCCC----ccccccCCCCceeccC-CCCCcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEEEEEee
Q psy5867 29 WSLSSCKPGFG----VDQLRDDCMDTYWQSD-GQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTD 103 (287)
Q Consensus 29 W~vSS~K~g~g----v~~L~d~~~~tyWQSd-g~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i~i~~~ 103 (287)
.+.||...++. ...+.|+++.|+|.+. +..++|+.+.|. +.+.|..|.|+.-
T Consensus 2 itaSS~~~~~~~~~~~~~~~Dg~~~t~W~~~~~~~~~~i~idl~-----------------------~~~~i~~i~i~~~ 58 (129)
T PF00754_consen 2 ITASSSYSGYYSAEPASNAFDGDPSTAWCSNWDDSPQWIQIDLG-----------------------KPYTISGISIQFR 58 (129)
T ss_dssp EEESSCSTTSSSGGGGGGGGSSSTTSSEEESSSSSTEEEEEEEE-----------------------EEEEEEEEEEEEE
T ss_pred EEEEEEeCCCCCcchHHheEeCCCCCEEECCCCCCCceEEEEee-----------------------eeEecceeeeccc
Confidence 35677776665 8999999999999998 777899999999 9999999999988
Q ss_pred cCCCCCcCcceEEEeecCCcCCceeeeEE--EccCCCceEEEEeccCCCCceeEEEEEEEEEeeeecCcccee
Q psy5867 104 YKLDESYTPSRVSVRAGTNFNDLQEIEVV--DLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHM 174 (287)
Q Consensus 104 ~~~DeSYtPs~I~i~~G~~~~dL~e~~~v--~~~~p~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthI 174 (287)
.. +..+.|..++|.+.++..+..++... ......+.+.+.+. .+..+.+|+|.+......+.-+.|
T Consensus 59 ~~-~~~~~~~~~~i~~s~dg~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~~ryiri~~~~~~~~~~~~~i 126 (129)
T PF00754_consen 59 ND-GNNGRPKSFKIEYSNDGSNWTTVASQFYGNTNSGSVVTISFF----PPVKARYIRITVTSWNGNNGWVSI 126 (129)
T ss_dssp SS-TTTEEEEEEEEEEESSSSSEEEEEETEEEESSSSSSEEEEEE----EEEEEEEEEEEEEEEESCSSEEEE
T ss_pred cc-ccceeeeeeeeeeecccccccccccceeeccCCCceEEEEeC----CCeEEEEEEEEEEEECCCCceEEE
Confidence 65 33379999999999887777777663 33344555555553 467788888777753334444443
No 22
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=98.01 E-value=0.0003 Score=57.38 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=85.4
Q ss_pred cceEEEeccCC-CCCccccccCCCCceeccCC-CCCcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEEEEEee
Q psy5867 26 QAIWSLSSCKP-GFGVDQLRDDCMDTYWQSDG-QLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTD 103 (287)
Q Consensus 26 ~a~W~vSS~K~-g~gv~~L~d~~~~tyWQSdg-~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i~i~~~ 103 (287)
.+.-+.||.-. +++..++ |++..|+|.+.. ..||||.|.|. +...|..|.+.-.
T Consensus 11 ~~~vtaSS~~~~~~~~~~~-dg~~~t~W~~~~~~~~~wi~vDL~-----------------------~~~~i~~v~i~~~ 66 (143)
T cd00057 11 DDQITASSSYSSGWEASRA-RLNSDNAWTPAVNDPPQWLQVDLG-----------------------KTRRVTGIQTQGR 66 (143)
T ss_pred CCCEEEEecCCCCCCcCee-ecCCCCcccCCCCCCCceEEEECC-----------------------CCEEEEEEEEccC
Confidence 45567888877 7889999 999999999987 55899999999 8888888887543
Q ss_pred cCCCCCcCcceEEEeecCCcCCceeeeE----EEcc-CC--CceEEEEeccCCCCceeEEEEEEEEEeeeecCccceeEE
Q psy5867 104 YKLDESYTPSRVSVRAGTNFNDLQEIEV----VDLN-EP--SGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQ 176 (287)
Q Consensus 104 ~~~DeSYtPs~I~i~~G~~~~dL~e~~~----v~~~-~p--~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthIrq 176 (287)
.....+--+....|.++....+...+.. ..+. .+ ..-+.+.| +.+..+.+|+|.+..... ...| .
T Consensus 67 ~~~~~~~~~~~~~i~~s~dg~~W~~~~~~~~~~~~~~~~~~~~~~~~~l----~~pv~aRyvRl~~~~~~~---~~~l-e 138 (143)
T cd00057 67 KGGGSSEWVTSYKVQYSLDGETWTTYKDKGEEKVFTGNSDGSTPVTNDF----PPPIVARYIRILPTTWNG---NISL-R 138 (143)
T ss_pred CCCCccCeeEEEEEEEECCCCCEeEEEcCCcEEEEeCCcCCCeEEEEeC----CCCEEEEEEEEEEeecCC---ccEE-E
Confidence 2111344577888888877656665543 2222 12 13444554 456888898877776443 5666 7
Q ss_pred EEEec
Q psy5867 177 IKVYS 181 (287)
Q Consensus 177 IkIy~ 181 (287)
+.+|+
T Consensus 139 ~evyG 143 (143)
T cd00057 139 LELYG 143 (143)
T ss_pred EEEcC
Confidence 77764
No 23
>KOG1428|consensus
Probab=97.34 E-value=0.00058 Score=75.89 Aligned_cols=129 Identities=21% Similarity=0.335 Sum_probs=105.4
Q ss_pred ceeecCcceEEEeccCCCCCccccccCCCCceeccCCC---CCcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEE
Q psy5867 20 IREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQ---LPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQ 96 (287)
Q Consensus 20 ~~~i~~~a~W~vSS~K~g~gv~~L~d~~~~tyWQSdg~---~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~ 96 (287)
++|+++.+-.+.||.. .=|-.|.|++.+|||.|-.. ..-.|+|+.- |...-.
T Consensus 2882 lKDlTs~vDIktSSR~--AMi~~LTD~S~ETFWESGdEDKNktknitin~~-----------------------k~~~~~ 2936 (3738)
T KOG1428|consen 2882 LKDLTSIVDIKTSSRP--AMIGSLTDGSTETFWESGDEDKNKTKNITINCV-----------------------KGINAR 2936 (3738)
T ss_pred HHhhhhheeccccCCc--eeEEEecCCCccchhhcCccccccccceEEEee-----------------------ccccce
Confidence 7899999999999987 46889999999999999543 3567777666 999999
Q ss_pred EEEEEeecCCCCCcCcceEEEeecCCcCCceeeeEEEccC-CCceEEEEeccCCCCceeEEEEEEEEEeeeecCccceeE
Q psy5867 97 DICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNE-PSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMR 175 (287)
Q Consensus 97 ~i~i~~~~~~DeSYtPs~I~i~~G~~~~dL~e~~~v~~~~-p~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthIr 175 (287)
.+++++|-+.|+-|--+-|...+|.-..||..++.++++. ..||++--++| ...|||..+--- --.+||
T Consensus 2937 ~vSv~vDNsRD~G~kvtSmtF~t~~a~~~~~~ikqv~LdS~~~GWvt~~l~D-------~~~IkIelKGPe---~t~RvR 3006 (3738)
T KOG1428|consen 2937 YVSVHVDNSRDLGNKVTSMTFLTGKAVEDLCRIKQVDLDSRHIGWVTSELPD-------NHIIKIELKGPE---NTLRVR 3006 (3738)
T ss_pred EEEEEeccchhcccceeeeeeecccchhhhhcceeecccccccceeeeecCC-------cceEEEEecCCC---ccceee
Confidence 9999999999999999999999999999999999999996 58999887763 345664333111 146789
Q ss_pred EEEEecCC
Q psy5867 176 QIKVYSPV 183 (287)
Q Consensus 176 qIkIy~~~ 183 (287)
|+++.+-.
T Consensus 3007 Qv~vLG~~ 3014 (3738)
T KOG1428|consen 3007 QVKVLGWK 3014 (3738)
T ss_pred eeeecccc
Confidence 99987654
No 24
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=96.08 E-value=0.17 Score=42.08 Aligned_cols=120 Identities=14% Similarity=0.177 Sum_probs=74.7
Q ss_pred CCCccccccCC-----CCceeccCCCCCcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEEEEEeecCCC--CC
Q psy5867 37 GFGVDQLRDDC-----MDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLD--ES 109 (287)
Q Consensus 37 g~gv~~L~d~~-----~~tyWQSdg~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i~i~~~~~~D--eS 109 (287)
+.+.+.++.++ +...|-..|.. .++.|++. +.+.|+.|.|.--.... -|
T Consensus 5 ~~~p~~il~~~~~~~~~g~Cw~~~g~~-~~~~I~L~-----------------------~~I~v~~v~i~h~~~~~~~~s 60 (135)
T PF07738_consen 5 AKPPSNILSPDKDSYMPGPCWAFEGSK-GWLTIELS-----------------------EPIYVTSVTIEHVEKSIAPFS 60 (135)
T ss_dssp ---GGGGGSS-----STT-SEEEETT--EEEEEEEE-----------------------EEEEEEEEEEE---GGGSG-T
T ss_pred cCChhheECCCCCcccCCccCccCCCc-eEEEEEcC-----------------------CcEEEEEEEEEEeccccCCcC
Confidence 34566666655 45679888877 45888888 99999999995444333 68
Q ss_pred cCcceEEEeecCCcCC--ceeeeEEEc-cCCCceEEEEeccCCCCceeEEEEEEEEEeeeecCccceeEEEEEecC
Q psy5867 110 YTPSRVSVRAGTNFND--LQEIEVVDL-NEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSP 182 (287)
Q Consensus 110 YtPs~I~i~~G~~~~d--L~e~~~v~~-~~p~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthIrqIkIy~~ 182 (287)
-.|+.+.|.+-....+ ...+...+. .+..+...+++... ....+-+|++.|+.|+=+..-|.|-.+++||.
T Consensus 61 Sapk~f~V~g~~~~~~~~~~~LG~f~y~~~~~~~QtF~l~~~--~~~~~~~i~l~i~sN~G~~~ytclyr~rVhG~ 134 (135)
T PF07738_consen 61 SAPKDFEVWGSVDYPDEEWVLLGEFEYDSDGNSIQTFPLPRP--PRQPVRYIKLRILSNHGNEEYTCLYRFRVHGE 134 (135)
T ss_dssp TSB-EEEEEEESSSSTS--EEEEEEE--TTS-SEEEEE-SS----S--EEEEEEEE--BSS-SSEEEE-EEEEEEE
T ss_pred CCCcEEEEEEEecccccceeeeceEEEcCCcCccEeeeeccC--chhcCcEEEEEEEcCCCCCceEEEEEEEEEee
Confidence 8999999998666544 577777776 34467777777542 11267789999999997666899999999874
No 25
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=95.80 E-value=0.28 Score=40.75 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=41.0
Q ss_pred cceeeEeeeecCCCccC--cceeeeeec-cCCCCeEEEeccCCCCCceEEEEEEEEEeecccCCCcceeeeeEEecc
Q psy5867 193 TVECQQVSVRAGTNFND--LQEIEVVDL-NEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSP 266 (287)
Q Consensus 193 SytpskISiraG~~~~D--l~ev~~~~l-~eP~GWv~i~l~~~~~~~lr~~~lQi~Il~NHqNGrDTHIR~ikI~gP 266 (287)
+.+|+.+.|..=....+ ...+...+. .+-.+.+.++|...... .+-+|+|.|++||=|..=|-|-++||||-
T Consensus 60 sSapk~f~V~g~~~~~~~~~~~LG~f~y~~~~~~~QtF~l~~~~~~--~~~~i~l~i~sN~G~~~ytclyr~rVhG~ 134 (135)
T PF07738_consen 60 SSAPKDFEVWGSVDYPDEEWVLLGEFEYDSDGNSIQTFPLPRPPRQ--PVRYIKLRILSNHGNEEYTCLYRFRVHGE 134 (135)
T ss_dssp TTSB-EEEEEEESSSSTS--EEEEEEE--TTS-SEEEEE-SS--S----EEEEEEEE--BSS-SSEEEE-EEEEEEE
T ss_pred CCCCcEEEEEEEecccccceeeeceEEEcCCcCccEeeeeccCchh--cCcEEEEEEEcCCCCCceEEEEEEEEEee
Confidence 34555565554322221 455666664 44467888888753222 78899999999997777899999999984
No 26
>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome. PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.
Probab=95.42 E-value=0.34 Score=42.04 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=72.9
Q ss_pred CCCccccccCCCC----ceeccCCCCCcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEEEEEeecCCCCCcCc
Q psy5867 37 GFGVDQLRDDCMD----TYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTP 112 (287)
Q Consensus 37 g~gv~~L~d~~~~----tyWQSdg~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i~i~~~~~~DeSYtP 112 (287)
+.+...|.....+ .|=+||.-.-=.|.|-|. ..|.|+.|.|-..- ++.-.|
T Consensus 20 ~~~~~~l~k~~~~r~d~~~l~SD~D~QLii~IpF~-----------------------~~Vkl~si~i~~~~--~~~~~P 74 (152)
T PF06201_consen 20 HSARNNLFKPWDDRLDPPFLESDADEQLIIHIPFT-----------------------QPVKLHSIIIKGPP--DDDSAP 74 (152)
T ss_dssp S-SCCCCSTTS--TTS---EE-SS-SSEEEEEEEE-----------------------EEEEEEEEEEE-----STTTSE
T ss_pred CCccceeEcccccccCccccccCCCceeEEEEccC-----------------------CceEEEEEEEEecc--CCCCCC
Confidence 3344366655443 899999876566777777 99999999887653 788999
Q ss_pred ceEEEeec-C---Cc---CCceeeeEEEccC--CCceEEEEeccCCCCceeEEEEEEEEEeeeecCccceeEEEEEecC
Q psy5867 113 SRVSVRAG-T---NF---NDLQEIEVVDLNE--PSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSP 182 (287)
Q Consensus 113 s~I~i~~G-~---~~---~dL~e~~~v~~~~--p~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthIrqIkIy~~ 182 (287)
++|++.+- . ++ .+.....++++.+ ..|++.++++- -+-..+.-+.|-|..|.-.+-.|+|..|.++|.
T Consensus 75 ~~iKlf~N~~~~ldF~~~~~~~p~q~~~l~~~~~~~~~~~~Lk~--~KFqnV~sLtif~~~n~g~~~~T~I~~i~l~G~ 151 (152)
T PF06201_consen 75 KTIKLFINQRPNLDFDDAESIKPTQELELTEEDSDGGVEYPLKF--VKFQNVNSLTIFFEDNQGGDDVTRIYYIGLRGE 151 (152)
T ss_dssp EEEEEEES-SS---CCHHCCS--SCEEE--TTTCCCT--EE--T--TT-TTEEEEEEEEEEETT--SS-EESEEEEEEE
T ss_pred eEEEEEECCCCCcCccccccCCCCceEEcCccccCCceEeeeee--eccCCccEEEEEEeCCcCCCccEEEEEEEEEee
Confidence 99999997 2 23 2445557888876 88999999874 244456678888888877678999999998874
No 27
>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome. PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.
Probab=92.37 E-value=0.98 Score=39.17 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=58.5
Q ss_pred eecCccceeEEEEEecCCCCCCCCccccceeeEeeeecC----CCccCc---ceeeeeeccC--CCCeEEEeccCCCCCc
Q psy5867 166 HQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAG----TNFNDL---QEIEVVDLNE--PSGWVKIPIKDIHDKP 236 (287)
Q Consensus 166 ~qfGrdthIrqIkIy~~~~~des~~fTSytpskISiraG----~~~~Dl---~ev~~~~l~e--P~GWv~i~l~~~~~~~ 236 (287)
+-|-.-++|+.|.|-+.. ++ ...|++|++.+. .+|.|+ ....+++|.+ +.|++.++|+-. +.
T Consensus 51 IpF~~~Vkl~si~i~~~~--~~-----~~~P~~iKlf~N~~~~ldF~~~~~~~p~q~~~l~~~~~~~~~~~~Lk~~--KF 121 (152)
T PF06201_consen 51 IPFTQPVKLHSIIIKGPP--DD-----DSAPKTIKLFINQRPNLDFDDAESIKPTQELELTEEDSDGGVEYPLKFV--KF 121 (152)
T ss_dssp EEEEEEEEEEEEEEE-----ST-----TTSEEEEEEEES-SS---CCHHCCS--SCEEE--TTTCCCT--EE--TT--T-
T ss_pred EccCCceEEEEEEEEecc--CC-----CCCCeEEEEEECCCCCcCccccccCCCCceEEcCccccCCceEeeeeee--cc
Confidence 445567889999998774 11 357899999887 345554 5566788876 899999999742 44
Q ss_pred eEEEEEEEEEeecccCCCcceeeeeEEec
Q psy5867 237 IRTYMIQIAVMSNHQNGRDTHMRQIKVYS 265 (287)
Q Consensus 237 lr~~~lQi~Il~NHqNGrDTHIR~ikI~g 265 (287)
-.+.-|+|-|.+|+-.+-=|.|-.|.++|
T Consensus 122 qnV~sLtif~~~n~g~~~~T~I~~i~l~G 150 (152)
T PF06201_consen 122 QNVNSLTIFFEDNQGGDDVTRIYYIGLRG 150 (152)
T ss_dssp TTEEEEEEEEEEETT--SS-EESEEEEEE
T ss_pred CCccEEEEEEeCCcCCCccEEEEEEEEEe
Confidence 46889999999999888889999999987
No 28
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=89.65 E-value=8.8 Score=30.91 Aligned_cols=92 Identities=12% Similarity=0.088 Sum_probs=57.8
Q ss_pred EEEEEEEEEeeeecCccceeEEEEEecCCCCCCCCccccceeeEeeeecCCCccCcceeee----eeccC-C--CCeEEE
Q psy5867 155 TYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEV----VDLNE-P--SGWVKI 227 (287)
Q Consensus 155 ~f~iQi~I~~n~qfGrdthIrqIkIy~~~~~des~~fTSytpskISiraG~~~~Dl~ev~~----~~l~e-P--~GWv~i 227 (287)
..||| +.+|+...|..|.+........ +--+..+.|.++....++..+.. ..+.. + ..-+.+
T Consensus 45 ~~wi~------vDL~~~~~i~~v~i~~~~~~~~-----~~~~~~~~i~~s~dg~~W~~~~~~~~~~~~~~~~~~~~~~~~ 113 (143)
T cd00057 45 PQWLQ------VDLGKTRRVTGIQTQGRKGGGS-----SEWVTSYKVQYSLDGETWTTYKDKGEEKVFTGNSDGSTPVTN 113 (143)
T ss_pred CceEE------EECCCCEEEEEEEEccCCCCCc-----cCeeEEEEEEEECCCCCEeEEEcCCcEEEEeCCcCCCeEEEE
Confidence 35777 6778888888888866553101 12345567777666555555443 22221 2 234555
Q ss_pred eccCCCCCceEEEEEEEEEeecccCCCcceeeeeEEec
Q psy5867 228 PIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYS 265 (287)
Q Consensus 228 ~l~~~~~~~lr~~~lQi~Il~NHqNGrDTHIR~ikI~g 265 (287)
.|. .|+++.+|+|.+++++. --.| .+.|||
T Consensus 114 ~l~----~pv~aRyvRl~~~~~~~---~~~l-e~evyG 143 (143)
T cd00057 114 DFP----PPIVARYIRILPTTWNG---NISL-RLELYG 143 (143)
T ss_pred eCC----CCEEEEEEEEEEeecCC---ccEE-EEEEcC
Confidence 553 47899999999999665 6777 888876
No 29
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=88.47 E-value=1.5 Score=40.65 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=31.2
Q ss_pred CCCccccccCCC---CceeccC----CCCCcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEEEEEeecCCCCC
Q psy5867 37 GFGVDQLRDDCM---DTYWQSD----GQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDES 109 (287)
Q Consensus 37 g~gv~~L~d~~~---~tyWQSd----g~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i~i~~~~~~DeS 109 (287)
.+.++.|.|.+. .|+|||. |.+.+.++|++. +.+...|..|.| .++ |
T Consensus 54 ~Hp~~~~~D~~~~~~~TwWQS~~~~~g~~~~~VtitLd---------------------L~~~f~v~~v~l--~F~---s 107 (237)
T PF00055_consen 54 SHPPSYLTDSHNPNNSTWWQSETLQNGVQYENVTITLD---------------------LGKEFEVTYVIL--QFC---S 107 (237)
T ss_dssp ---GGGGCSSSCTTB---EEB--STTTTSTT-EEEEEE---------------------EEEEEEEEEEEE--EES---S
T ss_pred ccChhhcccccccccCceecCCccCCCCcCcceEEEEc---------------------ccceEEEEEEEE--EEc---C
Confidence 568999998877 7999998 555567666555 447777776554 333 6
Q ss_pred cCcceEEEee
Q psy5867 110 YTPSRVSVRA 119 (287)
Q Consensus 110 YtPs~I~i~~ 119 (287)
.-|..+.|.-
T Consensus 108 pRP~~miier 117 (237)
T PF00055_consen 108 PRPAAMIIER 117 (237)
T ss_dssp ---SEEEEEE
T ss_pred CCCCeEEEEE
Confidence 6787777664
No 30
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=88.22 E-value=6.9 Score=30.24 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=59.0
Q ss_pred eEEEEEEEEEeeeecCccceeEEEEEecCCCCCCCCccccceeeEeeeecCCCccCcceeeee--eccCCCCeEEEeccC
Q psy5867 154 RTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVV--DLNEPSGWVKIPIKD 231 (287)
Q Consensus 154 ~~f~iQi~I~~n~qfGrdthIrqIkIy~~~~~des~~fTSytpskISiraG~~~~Dl~ev~~~--~l~eP~GWv~i~l~~ 231 (287)
...|+| +.+++...|.+|.++....... +.|+.+.|...+...+...+... ......+...+.+.
T Consensus 36 ~~~~i~------idl~~~~~i~~i~i~~~~~~~~------~~~~~~~i~~s~dg~~w~~~~~~~~~~~~~~~~~~~~~~- 102 (129)
T PF00754_consen 36 SPQWIQ------IDLGKPYTISGISIQFRNDGNN------GRPKSFKIEYSNDGSNWTTVASQFYGNTNSGSVVTISFF- 102 (129)
T ss_dssp STEEEE------EEEEEEEEEEEEEEEEESSTTT------EEEEEEEEEEESSSSSEEEEEETEEEESSSSSSEEEEEE-
T ss_pred CCceEE------EEeeeeEecceeeecccccccc------eeeeeeeeeeecccccccccccceeeccCCCceEEEEeC-
Confidence 456788 6788999999999987764322 57888889888777777777763 44556666666554
Q ss_pred CCCCceEEEEEEEEEee
Q psy5867 232 IHDKPIRTYMIQIAVMS 248 (287)
Q Consensus 232 ~~~~~lr~~~lQi~Il~ 248 (287)
+|..+.+|+|.+++
T Consensus 103 ---~~~~~ryiri~~~~ 116 (129)
T PF00754_consen 103 ---PPVKARYIRITVTS 116 (129)
T ss_dssp ---EEEEEEEEEEEEEE
T ss_pred ---CCeEEEEEEEEEEE
Confidence 47899999999987
No 31
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=76.55 E-value=3.8 Score=38.15 Aligned_cols=56 Identities=23% Similarity=0.301 Sum_probs=37.0
Q ss_pred CCCccccccCCC---CceeccCCCC--CcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEEEEEeecCCCCCcC
Q psy5867 37 GFGVDQLRDDCM---DTYWQSDGQL--PHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYT 111 (287)
Q Consensus 37 g~gv~~L~d~~~---~tyWQSdg~~--pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i~i~~~~~~DeSYt 111 (287)
-+++..|.|.+. .|+|||...+ ++.++|++. +.|...|..|.|-.- |.-
T Consensus 58 ~Hp~~~l~D~~~~~~~TwWQS~~~~~~~~~VtitLd---------------------L~k~fevtyi~l~F~-----s~R 111 (238)
T smart00136 58 SHPAENLTDGNNPNNPTWWQSEPLSNGPQNVNLTLD---------------------LGKEFHVTYVILKFC-----SPR 111 (238)
T ss_pred cCCHHHhhccCCCCCCceecCCCcCCCCccEEEEEe---------------------cCCEEEEEEEEEEec-----CCC
Confidence 468889998765 5999999754 466776655 447777776555332 455
Q ss_pred cceEEEe
Q psy5867 112 PSRVSVR 118 (287)
Q Consensus 112 Ps~I~i~ 118 (287)
|+.+.+.
T Consensus 112 Pa~~i~e 118 (238)
T smart00136 112 PSLWILE 118 (238)
T ss_pred CceEEEe
Confidence 6544444
No 32
>PF01834 XRCC1_N: XRCC1 N terminal domain; InterPro: IPR002706 DNA-repair protein Xrcc1 functions in the repair of single-strand DNA breaks in mammalian cells and forms a repair complex with beta-Pol, ligase III and PARP []. The NMR solution structure of the Xrcc1 N-terminal domain (Xrcc1 NTD) shows that the structural core is a beta-sandwich with beta-strands connected by loops, three helices and two short two-stranded beta-sheets at each connection side. The Xrcc1 NTD specifically binds single-strand break DNA (gapped and nicked) and a gapped DNA-beta-Pol complex [].; GO: 0003684 damaged DNA binding, 0000012 single strand break repair, 0005634 nucleus; PDB: 3K77_E 3K75_C 3LQC_A 1XNA_A 1XNT_A.
Probab=63.35 E-value=15 Score=32.38 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=49.3
Q ss_pred cceEEEeccCCCCCccccccCCCCceeccC--CCCCcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEEEEEee
Q psy5867 26 QAIWSLSSCKPGFGVDQLRDDCMDTYWQSD--GQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTD 103 (287)
Q Consensus 26 ~a~W~vSS~K~g~gv~~L~d~~~~tyWQSd--g~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i~i~~~ 103 (287)
..+-+.||--+.+.+++|++.+.-.=|++. |..-..|-+||. |-..|..|-|==.
T Consensus 7 k~VvS~SSed~~~~A~NLL~~d~~r~W~~~~~gek~~~V~lQl~-----------------------~~~~I~~IDIGN~ 63 (153)
T PF01834_consen 7 KHVVSFSSEDPVHPAENLLKSDTYRKWKCAKAGEKQASVELQLE-----------------------KASQITSIDIGNE 63 (153)
T ss_dssp EEEEEESSS-SSSHGGGGSCGGGCHHEEHSSTT-SEEEEEEEEE-----------------------EEE--SEEEEEEE
T ss_pred eEEEEEeCCCCCCchhhccCcccCCcccccCCCCceEEEEEEec-----------------------CceEEEEEeccCC
Confidence 345688999999999999998777779977 333467888888 9999999988633
Q ss_pred cCCCCCcCcceEEEeecCCcC
Q psy5867 104 YKLDESYTPSRVSVRAGTNFN 124 (287)
Q Consensus 104 ~~~DeSYtPs~I~i~~G~~~~ 124 (287)
-. .-|.|.+|.+.+
T Consensus 64 gS-------AfiEVlVg~S~~ 77 (153)
T PF01834_consen 64 GS-------AFIEVLVGRSSW 77 (153)
T ss_dssp B--------SEEEEEEE-STT
T ss_pred Ce-------EEEEEEeecccc
Confidence 33 678888887753
No 33
>PRK10154 hypothetical protein; Provisional
Probab=55.44 E-value=71 Score=27.54 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=37.4
Q ss_pred cceeeeeeccCCCCeEEEeccCCCCCceEEEEEEEEEeecccCCCcceeeeeEEecc
Q psy5867 210 LQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSP 266 (287)
Q Consensus 210 l~ev~~~~l~eP~GWv~i~l~~~~~~~lr~~~lQi~Il~NHqNGrDTHIR~ikI~gP 266 (287)
|...+.++=++-.||..|.-.. .-|-.+=.|.|.-|-.|.+| +=++||+|-
T Consensus 83 l~f~~~lk~~q~T~W~~~~~~~----~~kRCV~kI~v~G~s~~Ss~--~AglKVlG~ 133 (134)
T PRK10154 83 LNIPSEIKEGQTTDWININSDN----DNKRCVSKITFSGHTVNSSD--MATLKIIGD 133 (134)
T ss_pred EecchhhccCCccccEEccCCc----cccceeeEEEEEecccCCcc--ceeeEEecC
Confidence 4444556667788999887321 22334668999999999999 889999984
No 34
>KOG3512|consensus
Probab=40.13 E-value=56 Score=34.02 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=30.6
Q ss_pred CCccccccC---CCCceeccC----CCCCcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEEEEEeec
Q psy5867 38 FGVDQLRDD---CMDTYWQSD----GQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDY 104 (287)
Q Consensus 38 ~gv~~L~d~---~~~tyWQSd----g~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i~i~~~~ 104 (287)
++-.-|.|- ..-|||||. -+.|+.++|..+ .-|++.+..|+|-.-+
T Consensus 95 HpPalltD~n~~~n~TcWqS~tw~~~~~PlnVtlTLS---------------------lgKkfELT~Vsl~FcS 147 (592)
T KOG3512|consen 95 HPPALLTDLNGPGNATCWQSETWSRYPSPLNVTLTLS---------------------LGKKFELTYVSLTFCS 147 (592)
T ss_pred CChHHhcCCCCCCCcceeeccccCCCCCCceEEEEEe---------------------cCcEEEEEEEEEEEec
Confidence 344455553 356999994 344788887666 3488888888776553
No 35
>KOG0908|consensus
Probab=30.37 E-value=4.4e+02 Score=25.57 Aligned_cols=117 Identities=16% Similarity=0.264 Sum_probs=63.9
Q ss_pred ccccccCCCCceeccCCCCCcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEEEEEEeecCCCCCcCcceEEEee
Q psy5867 40 VDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRA 119 (287)
Q Consensus 40 v~~L~d~~~~tyWQSdg~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~i~i~~~~~~DeSYtPs~I~i~~ 119 (287)
.++-+..+..+|-+||+..--.|.+.|+ .-+.++++++-= -+++--|..++|..
T Consensus 145 l~nalkk~~ss~lesD~DeQl~isi~fn-----------------------q~vk~hS~a~k~---p~~~~~Pk~vkifi 198 (288)
T KOG0908|consen 145 LKNALKKNFSSNLESDCDEQLIISIPFN-----------------------QAVKVHSIAIKG---PANPLGPKTVKIFI 198 (288)
T ss_pred hHHHHhhccccceecccccceEEEeecc-----------------------CccceeeeecCC---CCCCCCCeeEEEEe
Confidence 3334445566899999999888888888 666666655421 23666677777665
Q ss_pred cCC-cCCce------eeeEEEccCC--CceEEEEeccCCCCceeEEEEEEEEEeeeecCccceeEEEEEecCCCC
Q psy5867 120 GTN-FNDLQ------EIEVVDLNEP--SGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQ 185 (287)
Q Consensus 120 G~~-~~dL~------e~~~v~~~~p--~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthIrqIkIy~~~~~ 185 (287)
-.- ..|.. -....++.+. .|- .|+|+- =+-....-|||-|..|.-.+--|+|..+.+|+....
T Consensus 199 n~pr~~~F~~a~~f~ptQ~lel~e~~~~~~-~V~lry--vkfqnV~sv~iFiq~n~gg~evtri~~~~~~GsPv~ 270 (288)
T KOG0908|consen 199 NQPRTMDFENAESFEPTQLLELTELDLQGL-PVPLRY--VKFQNVNSVQIFIQSNQGGEEVTRISKLGLFGSPVP 270 (288)
T ss_pred cCccccCcccccccCcccccchhhhhccCc-eEEeee--eeEEEeeEEEEEEecCCCCcccceeeeeeeccccCC
Confidence 411 01111 1111111111 111 122210 012233455677777776667888988988876644
No 36
>PF13987 YedD: YedD-like protein
Probab=22.66 E-value=35 Score=28.45 Aligned_cols=16 Identities=44% Similarity=0.864 Sum_probs=12.8
Q ss_pred CCceeccCCCCCcEEE
Q psy5867 48 MDTYWQSDGQLPHLVN 63 (287)
Q Consensus 48 ~~tyWQSdg~~pH~i~ 63 (287)
..-||||-|+|.-++.
T Consensus 10 L~G~WQs~GPQs~lvS 25 (111)
T PF13987_consen 10 LAGYWQSKGPQSALVS 25 (111)
T ss_pred cceeeeccCCcccccC
Confidence 5679999999976654
No 37
>PRK10154 hypothetical protein; Provisional
Probab=22.52 E-value=2.1e+02 Score=24.69 Aligned_cols=78 Identities=13% Similarity=0.242 Sum_probs=40.6
Q ss_pred eeeeeee-eeeEEEEEEEeecCCCCCcCcceEEEeecCCcCCceeeeEEEccCCCceEEEEeccCCCCceeEEEEEEEEE
Q psy5867 85 VNVQFRR-KTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVM 163 (287)
Q Consensus 85 ~~~~~~k-~~~i~~i~i~~~~~~DeSYtPs~I~i~~G~~~~dL~e~~~v~~~~p~Gwv~i~~~~~~d~~l~~f~iQi~I~ 163 (287)
|.++-.+ .+.+..+.+|..-..++|- .|.-.+.++=++.++|..|.-. ++.-+| .=.|.+.
T Consensus 55 IqlkAdRgD~~L~~v~V~F~~~ng~s~--------------tl~f~~~lk~~q~T~W~~~~~~---~~~kRC-V~kI~v~ 116 (134)
T PRK10154 55 IQLSADHGDLQLSGASVYFKAARSASQ--------------SLNIPSEIKEGQTTDWININSD---NDNKRC-VSKITFS 116 (134)
T ss_pred EEEEeccCceEEEEEEEEEeccCCCce--------------EEecchhhccCCccccEEccCC---ccccce-eeEEEEE
Confidence 4444444 5555555555543333332 2222333444677899987542 233333 2245566
Q ss_pred eeeecCccceeEEEEEecC
Q psy5867 164 SNHQNGRDTHMRQIKVYSP 182 (287)
Q Consensus 164 ~n~qfGrdthIrqIkIy~~ 182 (287)
-+-.+++++. .+++|++
T Consensus 117 G~s~~Ss~~A--glKVlG~ 133 (134)
T PRK10154 117 GHTVNSSDMA--TLKIIGD 133 (134)
T ss_pred ecccCCccce--eeEEecC
Confidence 6666666643 6777765
No 38
>PF01700 Orbi_VP3: Orbivirus VP3 (T2) protein; InterPro: IPR002614 This entry represents the inner layer core protein VP3 from Orbiviruses, a family of Reoviruses that have dsRNA genomes of 10-12 linear segments []. Orbiviruses include Broadhaven virus (BRD), Epizootic hemorrhagic disease virus and Bluetongue virus (BTV) []. The Orbivirus VP3 protein is part of the virus core and makes a 'subcore' shell made up of 120 copies of the 100K protein []. VP3 particles can also bind RNA and are fundamental in the early stages of viral core formation []. The structural core protein VP2 from BRD is similar to VP3 from BTV.; GO: 0005198 structural molecule activity; PDB: 2BTV_A.
Probab=22.04 E-value=1.1e+02 Score=33.64 Aligned_cols=72 Identities=21% Similarity=0.312 Sum_probs=38.2
Q ss_pred ccccccCCCCceeccCCCCCcEEEEEEcccccccchhhhcccCceeeeeeeeeeeE-------EEEEEEeecCCCCCcCc
Q psy5867 40 VDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTV-------QDICIYTDYKLDESYTP 112 (287)
Q Consensus 40 v~~L~d~~~~tyWQSdg~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i-------~~i~i~~~~~~DeSYtP 112 (287)
+.+++|+ -.|=-.|.--..+.++|..++-+++ +++||||.-..+.+.++.= .....|+=|+.|+++||
T Consensus 751 iR~iLDd---g~~I~~G~~LR~v~~~~f~~~Pp~~--il~~lPf~Y~~~e~~G~~~~t~~~~~~v~~y~liYnv~~~~~P 825 (890)
T PF01700_consen 751 IRRILDD---GGWIRFGGVLRPVVLKFFESMPPEE--ILQALPFEYKTEEKDGLAYVTVKYAREVTAYYLIYNVDYSNTP 825 (890)
T ss_dssp HHHHHHT---T-EEEE-S---EEEEEEESS---HH--HHT--SCEEEEE--TTT-EEEEEE--EEEEEEE-----TT--C
T ss_pred HHHHhcC---CCeEEecceeeeEEEEecCCCCcHH--HHHhCCceecccccCCceEEEEEeccceeEEEEEEecCCCCCc
Confidence 5677776 5687778877899999998888886 4699999999888875322 22345778899999999
Q ss_pred ceEE
Q psy5867 113 SRVS 116 (287)
Q Consensus 113 s~I~ 116 (287)
....
T Consensus 826 D~~i 829 (890)
T PF01700_consen 826 DELI 829 (890)
T ss_dssp GGG-
T ss_pred hhhh
Confidence 8653
No 39
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=21.89 E-value=4.4e+02 Score=21.38 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=24.0
Q ss_pred eEEEeccCCCCCccccccCCCCceeccCCCC-CcEEEEEEc
Q psy5867 28 IWSLSSCKPGFGVDQLRDDCMDTYWQSDGQL-PHLVNVQFR 67 (287)
Q Consensus 28 ~W~vSS~K~g~gv~~L~d~~~~tyWQSdg~~-pH~i~i~f~ 67 (287)
.++.||...+.....|-.+ ..++|-..... ++|+.|.|.
T Consensus 13 ~itasS~~~~~~~~rL~~~-~~~~W~~~~~~~~~wlqvDLg 52 (139)
T smart00231 13 QITASSSYWAAKIARLNGG-SDGAWCPAKNSLPPWIQVDLG 52 (139)
T ss_pred cEEEcCCCCCCCccCcCcC-CCCcccCCCCCCCceeEeecc
Confidence 4667774112222344322 46899877655 799999998
No 40
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=21.41 E-value=2.1e+02 Score=21.88 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=26.5
Q ss_pred ceeeEeeeecCCCccCcceeeeeeccCCCCeEEEeccCCCC
Q psy5867 194 VECQQVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHD 234 (287)
Q Consensus 194 ytpskISiraG~~~~Dl~ev~~~~l~eP~GWv~i~l~~~~~ 234 (287)
-.+..+.|.+|.+..+ ...+....||..+.+...++
T Consensus 46 ~~~~~~~v~ag~~~~~-----~w~l~~s~gwYDl~v~~~~~ 81 (89)
T PF05506_consen 46 GGPWTYTVAAGQTVSL-----TWPLAASGGWYDLTVTGPNG 81 (89)
T ss_pred CCCEEEEECCCCEEEE-----EEeecCCCCcEEEEEEcCCC
Confidence 3466789999965332 35567889999999987655
Done!