RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5867
(287 letters)
>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting
complex {Human (Homo sapiens) [TaxId: 9606]}
Length = 161
Score = 176 bits (446), Expect = 5e-56
Identities = 108/174 (62%), Positives = 130/174 (74%), Gaps = 23/174 (13%)
Query: 10 DPVMEERLGRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRK 69
DP ER G +RE+GSQA+WSLSSCKPGFGVDQLRDD ++TYWQSDG PHLVN+QFRRK
Sbjct: 11 DPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRK 70
Query: 70 TTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEI 129
TTV+ +CIY DYK DESYTPS++SVR G NF++LQEI
Sbjct: 71 TTVKTLCIY-----------------------ADYKSDESYTPSKISVRVGNNFHNLQEI 107
Query: 130 EVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPV 183
++L EPSGW+ +P+ D H KP RT+MIQIAV++NHQNGRDTHMRQIK+Y+PV
Sbjct: 108 RQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPV 161
Score = 97.8 bits (243), Expect = 8e-26
Identities = 50/99 (50%), Positives = 70/99 (70%), Gaps = 5/99 (5%)
Query: 169 GRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEPSGWVKIP 228
R T ++ + +Y+ + S + + SVR G NF++LQEI ++L EPSGW+ +P
Sbjct: 68 RRKTTVKTLCIYADYKSDESYTPSKI-----SVRVGNNFHNLQEIRQLELVEPSGWIHVP 122
Query: 229 IKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPV 267
+ D H KP RT+MIQIAV++NHQNGRDTHMRQIK+Y+PV
Sbjct: 123 LTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPV 161
>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting
complex {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 194
Score = 160 bits (407), Expect = 1e-49
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 25/167 (14%)
Query: 18 GRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICI 77
R+ V A+W SS K G VD DD DT+WQSDG PH +++ F ++ + + I
Sbjct: 50 ARMINVTHLALWKPSSFKLGNPVDFALDDNYDTFWQSDGGQPHQLDIMFSKRMDICVMAI 109
Query: 78 YRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEP 137
+ DESY PS V V AG + +D + +++++
Sbjct: 110 F-----------------------FSMIADESYAPSLVKVYAGHSPSDARFYKMLEVRNV 146
Query: 138 SGWVKIPIKDIH--DKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSP 182
+GWV + D D+ ++ I++ NH+NG+DTH+R I++Y P
Sbjct: 147 NGWVALRFLDNREDDQLLKCQFIRLLFPVNHENGKDTHLRGIRLYVP 193
Score = 102 bits (256), Expect = 3e-27
Identities = 30/171 (17%), Positives = 67/171 (39%), Gaps = 16/171 (9%)
Query: 107 DESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWV------KIPIKDIHDKPIRTYMIQI 160
++ TP + L ++++ + W P+ D T+
Sbjct: 28 YQNPTPENLQHMFHQGIEILDSARMINVTHLALWKPSSFKLGNPVDFALDDNYDTFWQSD 87
Query: 161 AVMSNH---QNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVD 217
+ + + + ++ + S V V AG + +D + ++++
Sbjct: 88 GGQPHQLDIMFSKRMDICVMAIFFSMIADESYAP-----SLVKVYAGHSPSDARFYKMLE 142
Query: 218 LNEPSGWVKIPIKDIH--DKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSP 266
+ +GWV + D D+ ++ I++ NH+NG+DTH+R I++Y P
Sbjct: 143 VRNVNGWVALRFLDNREDDQLLKCQFIRLLFPVNHENGKDTHLRGIRLYVP 193
>d1shwb_ b.18.1.4 (B:) Ligand-binding domain of the ephb2 receptor
tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
Length = 181
Score = 28.6 bits (64), Expect = 0.55
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 137 PSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQN 168
PSGW ++ D + IRTY + V + QN
Sbjct: 22 PSGWEEVSGYDENMNTIRTYQV-CNVFESSQN 52
Score = 28.6 bits (64), Expect = 0.55
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 221 PSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQN 252
PSGW ++ D + IRTY + V + QN
Sbjct: 22 PSGWEEVSGYDENMNTIRTYQV-CNVFESSQN 52
>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol
dehydrogenase, ADH6 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 192
Score = 27.9 bits (61), Expect = 1.0
Identities = 8/43 (18%), Positives = 12/43 (27%)
Query: 134 LNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQ 176
+ W KP + I I + + G D H
Sbjct: 12 IQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAA 54
Score = 27.9 bits (61), Expect = 1.0
Identities = 8/43 (18%), Positives = 12/43 (27%)
Query: 218 LNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQ 260
+ W KP + I I + + G D H
Sbjct: 12 IQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAA 54
>d2bbaa1 b.18.1.4 (A:17-196) Ephrin type-B receptor 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 180
Score = 25.9 bits (57), Expect = 4.6
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 136 EPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQN 168
W ++ D +RTY + + Q
Sbjct: 22 VDGQWEELSGLDEEQHSVRTYEVCDVQRAPGQA 54
Score = 25.9 bits (57), Expect = 4.6
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 220 EPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQN 252
W ++ D +RTY + + Q
Sbjct: 22 VDGQWEELSGLDEEQHSVRTYEVCDVQRAPGQA 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.407
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,104,098
Number of extensions: 51497
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 14
Length of query: 287
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,254,276
Effective search space: 254618028
Effective search space used: 254618028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)