BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5872
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95164|UBL3_HUMAN Ubiquitin-like protein 3 OS=Homo sapiens GN=UBL3 PE=1 SV=1
Length = 117
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/91 (79%), Positives = 78/91 (85%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS 60
INLRLILVSGKTKEFLFSP+DSA DIA+HV+DNWP DW +E V+ +ILRLIYQGRFLH
Sbjct: 10 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 69
Query: 61 NVTLGALGLTCSKTTVMHLVPRENLPEPNSQ 91
NVTLGAL L KTTVMHLV RE LPEPNSQ
Sbjct: 70 NVTLGALKLPFGKTTVMHLVARETLPEPNSQ 100
>sp|Q2TA46|UBL3_BOVIN Ubiquitin-like protein 3 OS=Bos taurus GN=UBL3 PE=3 SV=1
Length = 117
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/91 (79%), Positives = 78/91 (85%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS 60
INLRLILVSGKTKEFLFSP+DSA DIA+HV+DNWP DW +E V+ +ILRLIYQGRFLH
Sbjct: 10 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 69
Query: 61 NVTLGALGLTCSKTTVMHLVPRENLPEPNSQ 91
NVTLGAL L KTTVMHLV RE LPEPNSQ
Sbjct: 70 NVTLGALKLPFGKTTVMHLVARETLPEPNSQ 100
>sp|Q5BJT2|UBL3_RAT Ubiquitin-like protein 3 OS=Rattus norvegicus GN=Ubl3 PE=2 SV=1
Length = 117
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/91 (79%), Positives = 78/91 (85%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS 60
INLRLILVSGKTKEFLFSP+DSA DIA+HV+DNWP DW +E V+ +ILRLIYQGRFLH
Sbjct: 10 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 69
Query: 61 NVTLGALGLTCSKTTVMHLVPRENLPEPNSQ 91
NVTLGAL L KTTVMHLV RE LPEPNSQ
Sbjct: 70 NVTLGALKLPFGKTTVMHLVARETLPEPNSQ 100
>sp|Q9Z2M6|UBL3_MOUSE Ubiquitin-like protein 3 OS=Mus musculus GN=Ubl3 PE=1 SV=1
Length = 117
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/91 (79%), Positives = 78/91 (85%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS 60
INLRLILVSGKTKEFLFSP+DSA DIA+HV+DNWP DW +E V+ +ILRLIYQGRFLH
Sbjct: 10 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 69
Query: 61 NVTLGALGLTCSKTTVMHLVPRENLPEPNSQ 91
NVTLGAL L KTTVMHLV RE LPEPNSQ
Sbjct: 70 NVTLGALKLPFGKTTVMHLVARETLPEPNSQ 100
>sp|Q12285|MDY2_YEAST Ubiquitin-like protein MDY2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MDY2 PE=1 SV=1
Length = 212
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS 60
+ L+ I + E FSPSD+ I QH+ S+E + ++L+ +G+ LH
Sbjct: 76 LTLKKIQAPKFSIEHDFSPSDTILQIKQHLI-------SEEKASHISEIKLLLKGKVLHD 128
Query: 61 NVTLGALGLTCSKTTVMHLV 80
N+ L L +T + +T+ ++
Sbjct: 129 NLFLSDLKVTPANSTITVMI 148
>sp|Q6Z8K4|MUB3_ORYSJ Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp.
japonica GN=MUB3 PE=3 SV=1
Length = 119
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 17 FSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLG----ALGLTCS 72
+ PS + + + + WP+D D L+LI GR L +N TL +G
Sbjct: 25 YDPSTTVSALKEFILARWPQDKEITPKTVND-LKLINAGRILENNRTLAESRVPVGEVPG 83
Query: 73 KTTVMHLVPRENLPEPNSQ 91
MH+V R P+ NS+
Sbjct: 84 GVITMHVVVRPPQPDKNSE 102
>sp|Q05120|UBIL_NPVOP Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=V-UBI PE=3 SV=1
Length = 93
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 8 VSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGAL 67
++GKT P D+ G + Q + D E V D RLIY G+ L TL
Sbjct: 8 LTGKTITVETEPGDTVGQVKQKIADK-------EGVP-VDQQRLIYAGKQLEDAQTLADY 59
Query: 68 GLTCSKTTVMHLVPR 82
+ K + +H+V R
Sbjct: 60 NI--QKESTLHMVLR 72
>sp|Q8DJY2|DFA1_THEEB Putative diflavin flavoprotein A 1 OS=Thermosynechococcus elongatus
(strain BP-1) GN=dfa1 PE=3 SV=1
Length = 571
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 24 GDIAQHVFDNWPE---DWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVM 77
G + +H D W E +WS E A + + Y + +SN A+ +KT V+
Sbjct: 237 GPLLRHHLDQWLESYRNWSQEQAKAATTVAIFYAANYGYSNALAEAIERGTAKTGVV 293
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,375,320
Number of Sequences: 539616
Number of extensions: 1197513
Number of successful extensions: 2076
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2072
Number of HSP's gapped (non-prelim): 9
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)