Query psy5872
Match_columns 91
No_of_seqs 108 out of 843
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 20:13:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13881 Rad60-SLD_2: Ubiquiti 100.0 2.6E-28 5.6E-33 159.1 10.9 89 1-90 3-96 (111)
2 cd01814 NTGP5 Ubiquitin-like N 99.9 1.8E-26 4E-31 150.2 6.7 87 1-90 5-98 (113)
3 cd01790 Herp_N Homocysteine-re 99.9 2E-23 4.4E-28 128.9 7.3 74 1-82 2-79 (79)
4 cd01807 GDX_N ubiquitin-like d 99.9 2.8E-22 6.1E-27 121.1 8.7 73 1-83 1-73 (74)
5 cd01794 DC_UbP_C dendritic cel 99.9 5.3E-22 1.2E-26 119.6 7.3 70 3-82 1-70 (70)
6 cd01798 parkin_N amino-termina 99.8 3.9E-21 8.6E-26 114.9 7.5 70 3-82 1-70 (70)
7 cd01797 NIRF_N amino-terminal 99.8 5.8E-21 1.3E-25 117.2 8.3 73 2-84 2-76 (78)
8 cd01793 Fubi Fubi ubiquitin-li 99.8 8.5E-21 1.8E-25 114.7 8.3 70 2-83 2-71 (74)
9 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 6.1E-21 1.3E-25 116.0 7.7 70 1-80 2-71 (73)
10 cd01808 hPLIC_N Ubiquitin-like 99.8 1.4E-20 3E-25 112.9 8.2 71 1-82 1-71 (71)
11 cd01810 ISG15_repeat2 ISG15 ub 99.8 1.4E-20 3E-25 113.8 7.5 71 3-83 1-71 (74)
12 cd01802 AN1_N ubiquitin-like d 99.8 2.5E-20 5.5E-25 119.9 8.4 72 2-83 29-100 (103)
13 PTZ00044 ubiquitin; Provisiona 99.8 4.5E-20 9.7E-25 111.4 8.6 73 1-83 1-73 (76)
14 cd01792 ISG15_repeat1 ISG15 ub 99.8 6.8E-20 1.5E-24 112.4 7.6 73 1-83 3-77 (80)
15 cd01809 Scythe_N Ubiquitin-lik 99.8 1.3E-19 2.9E-24 107.6 8.7 72 1-82 1-72 (72)
16 cd01805 RAD23_N Ubiquitin-like 99.8 2E-19 4.3E-24 108.6 9.3 74 1-84 1-76 (77)
17 PF00240 ubiquitin: Ubiquitin 99.8 8.7E-20 1.9E-24 108.0 7.3 68 6-83 1-68 (69)
18 cd01806 Nedd8 Nebb8-like ubiq 99.8 2.6E-19 5.6E-24 107.3 9.1 73 1-83 1-73 (76)
19 cd01804 midnolin_N Ubiquitin-l 99.8 1.7E-19 3.6E-24 110.4 8.1 72 1-83 2-73 (78)
20 cd01796 DDI1_N DNA damage indu 99.8 1.8E-19 4E-24 108.4 7.1 67 3-79 1-69 (71)
21 cd01803 Ubiquitin Ubiquitin. U 99.8 6E-19 1.3E-23 105.7 8.4 73 1-83 1-73 (76)
22 cd01800 SF3a120_C Ubiquitin-li 99.8 2.6E-18 5.6E-23 104.4 7.0 67 8-84 5-71 (76)
23 KOG0005|consensus 99.8 8.6E-19 1.9E-23 103.1 4.2 69 2-80 2-70 (70)
24 cd01812 BAG1_N Ubiquitin-like 99.7 1.3E-17 2.8E-22 99.0 7.6 69 1-80 1-69 (71)
25 cd01815 BMSC_UbP_N Ubiquitin-l 99.7 1.1E-17 2.3E-22 102.5 5.3 58 17-81 16-74 (75)
26 TIGR00601 rad23 UV excision re 99.7 4.1E-17 8.9E-22 124.6 9.5 74 1-79 1-74 (378)
27 KOG0004|consensus 99.7 1.9E-17 4.1E-22 112.8 4.0 71 3-83 3-73 (156)
28 KOG0003|consensus 99.7 4.9E-18 1.1E-22 110.2 0.4 70 3-82 3-72 (128)
29 cd01813 UBP_N UBP ubiquitin pr 99.7 2E-16 4.4E-21 96.1 7.4 68 1-79 1-71 (74)
30 cd01763 Sumo Small ubiquitin-r 99.7 6E-16 1.3E-20 96.4 8.7 73 1-83 12-84 (87)
31 KOG0010|consensus 99.7 1.7E-16 3.6E-21 123.6 7.1 73 1-84 16-88 (493)
32 KOG0011|consensus 99.6 4.6E-16 1E-20 116.5 7.6 76 1-82 1-76 (340)
33 smart00213 UBQ Ubiquitin homol 99.6 1.2E-15 2.6E-20 88.0 7.0 63 1-72 1-63 (64)
34 cd01799 Hoil1_N Ubiquitin-like 99.6 7.1E-15 1.5E-19 89.7 6.6 62 8-80 10-73 (75)
35 cd01769 UBL Ubiquitin-like dom 99.5 8.2E-14 1.8E-18 81.1 7.4 66 5-80 2-67 (69)
36 KOG4248|consensus 99.5 1.2E-13 2.6E-18 114.7 6.7 72 1-83 3-74 (1143)
37 PF11976 Rad60-SLD: Ubiquitin- 99.4 1.2E-12 2.6E-17 78.0 6.3 71 1-81 1-72 (72)
38 cd01795 USP48_C USP ubiquitin- 99.4 1.2E-12 2.7E-17 83.9 6.5 63 12-84 16-79 (107)
39 cd01789 Alp11_N Ubiquitin-like 99.2 6.1E-11 1.3E-15 73.5 8.2 70 2-81 3-80 (84)
40 KOG0001|consensus 99.2 5.3E-10 1.2E-14 64.3 8.7 71 3-83 2-72 (75)
41 PLN02560 enoyl-CoA reductase 99.1 8.9E-10 1.9E-14 82.5 8.1 70 1-79 1-80 (308)
42 PF14560 Ubiquitin_2: Ubiquiti 99.0 2.6E-09 5.6E-14 66.1 7.2 70 1-80 2-81 (87)
43 cd01801 Tsc13_N Ubiquitin-like 99.0 2.4E-09 5.3E-14 65.0 6.1 53 18-79 20-74 (77)
44 PF10302 DUF2407: DUF2407 ubiq 99.0 5.2E-09 1.1E-13 66.8 7.5 60 3-68 3-65 (97)
45 cd01788 ElonginB Ubiquitin-lik 98.8 3.4E-08 7.3E-13 64.8 6.5 64 11-82 12-80 (119)
46 KOG0006|consensus 98.8 1.3E-08 2.9E-13 77.0 5.3 63 11-83 14-77 (446)
47 cd00196 UBQ Ubiquitin-like pro 98.7 1.3E-07 2.8E-12 51.3 7.1 65 6-80 3-67 (69)
48 KOG4583|consensus 98.7 9.2E-10 2E-14 83.3 -3.3 80 2-87 11-92 (391)
49 cd01770 p47_UBX p47-like ubiqu 98.4 4.9E-06 1.1E-10 51.0 8.4 62 2-70 6-70 (79)
50 cd01811 OASL_repeat1 2'-5' oli 98.3 9.7E-06 2.1E-10 49.7 7.7 61 1-70 1-66 (80)
51 PF11543 UN_NPL4: Nuclear pore 98.3 2.4E-06 5.2E-11 52.7 5.0 67 2-79 6-77 (80)
52 PF00789 UBX: UBX domain; Int 98.2 1.8E-05 4E-10 47.9 7.7 69 1-79 7-80 (82)
53 cd01767 UBX UBX (ubiquitin reg 97.9 0.00012 2.7E-09 44.0 8.0 61 2-71 4-69 (77)
54 cd01774 Faf1_like2_UBX Faf1 ik 97.9 0.00013 2.8E-09 45.3 8.1 64 1-73 5-78 (85)
55 smart00166 UBX Domain present 97.8 0.00023 4.9E-09 43.2 7.2 64 2-73 6-74 (80)
56 PF08817 YukD: WXG100 protein 97.7 9.2E-05 2E-09 44.9 4.8 72 1-74 3-75 (79)
57 KOG4495|consensus 97.7 7.4E-05 1.6E-09 47.9 4.1 52 11-70 12-65 (110)
58 KOG1769|consensus 97.7 0.00082 1.8E-08 43.1 8.8 71 1-79 21-91 (99)
59 cd01772 SAKS1_UBX SAKS1-like U 97.7 0.0004 8.7E-09 42.3 7.1 63 2-73 6-73 (79)
60 KOG1872|consensus 97.5 0.00024 5.2E-09 56.0 5.7 63 8-80 10-73 (473)
61 KOG3493|consensus 97.5 5.5E-05 1.2E-09 45.3 1.3 64 3-74 4-67 (73)
62 KOG0013|consensus 97.4 0.00031 6.8E-09 50.6 4.5 61 9-77 155-215 (231)
63 cd01771 Faf1_UBX Faf1 UBX doma 97.3 0.0032 7E-08 38.6 7.9 64 1-73 5-73 (80)
64 cd01773 Faf1_like1_UBX Faf1 ik 97.2 0.0062 1.3E-07 37.8 8.3 64 2-74 7-75 (82)
65 PF13019 Telomere_Sde2: Telome 97.2 0.0045 9.7E-08 42.9 8.4 74 1-82 1-84 (162)
66 COG5417 Uncharacterized small 97.0 0.0071 1.5E-07 37.2 7.1 71 1-74 7-77 (81)
67 COG5227 SMT3 Ubiquitin-like pr 96.7 0.014 2.9E-07 37.2 6.8 66 1-74 25-90 (103)
68 KOG2086|consensus 96.5 0.0068 1.5E-07 46.9 5.5 62 2-70 307-371 (380)
69 PF09379 FERM_N: FERM N-termin 96.4 0.043 9.2E-07 32.5 7.6 71 5-82 1-77 (80)
70 PF15044 CLU_N: Mitochondrial 96.3 0.013 2.8E-07 35.6 4.9 59 17-84 1-60 (76)
71 PF11470 TUG-UBL1: GLUT4 regul 95.0 0.13 2.9E-06 30.4 5.7 60 6-73 2-61 (65)
72 PF10209 DUF2340: Uncharacteri 94.9 0.15 3.1E-06 33.9 6.3 62 12-73 16-101 (122)
73 KOG3206|consensus 94.2 0.17 3.8E-06 36.6 5.7 58 13-80 15-79 (234)
74 KOG1639|consensus 93.1 0.24 5.3E-06 36.9 5.0 52 15-73 17-72 (297)
75 cd06409 PB1_MUG70 The MUG70 pr 92.2 0.66 1.4E-05 29.0 5.4 32 3-34 3-34 (86)
76 smart00666 PB1 PB1 domain. Pho 91.0 1.6 3.4E-05 25.8 6.1 45 2-55 3-47 (81)
77 smart00295 B41 Band 4.1 homolo 90.8 0.68 1.5E-05 31.3 4.9 62 1-70 4-72 (207)
78 TIGR01682 moaD molybdopterin c 90.4 0.59 1.3E-05 27.9 3.9 57 8-74 12-70 (80)
79 cd00754 MoaD Ubiquitin domain 90.0 1.1 2.4E-05 26.2 4.8 57 9-74 13-70 (80)
80 cd06406 PB1_P67 A PB1 domain i 89.7 1.5 3.3E-05 27.0 5.3 37 12-56 12-48 (80)
81 PF08337 Plexin_cytopl: Plexin 89.3 1.4 3.1E-05 35.8 6.2 69 11-83 202-290 (539)
82 PF02597 ThiS: ThiS family; I 89.3 1.3 2.7E-05 25.7 4.6 57 9-74 11-67 (77)
83 TIGR01687 moaD_arch MoaD famil 89.1 3.3 7.3E-05 24.8 7.3 61 9-74 13-78 (88)
84 PF14732 UAE_UbL: Ubiquitin/SU 88.4 3 6.6E-05 25.7 6.1 58 15-75 2-64 (87)
85 PRK06437 hypothetical protein; 87.9 3.3 7.2E-05 24.2 5.8 54 4-74 3-57 (67)
86 cd01787 GRB7_RA RA (RAS-associ 87.6 1.8 3.8E-05 27.1 4.6 61 2-67 4-68 (85)
87 PF12754 Blt1: Cell-cycle cont 87.2 0.18 4E-06 38.2 0.0 49 20-69 103-159 (309)
88 TIGR02958 sec_mycoba_snm4 secr 86.6 7.1 0.00015 30.9 8.5 77 2-83 4-81 (452)
89 PF14836 Ubiquitin_3: Ubiquiti 86.4 6.1 0.00013 24.8 6.8 54 11-73 14-73 (88)
90 cd06407 PB1_NLP A PB1 domain i 85.7 5.4 0.00012 24.4 6.0 28 8-35 7-34 (82)
91 cd01760 RBD Ubiquitin-like dom 85.1 4.4 9.5E-05 24.3 5.3 44 3-54 2-45 (72)
92 smart00455 RBD Raf-like Ras-bi 84.6 4.9 0.00011 23.8 5.4 49 3-59 2-52 (70)
93 PLN02799 Molybdopterin synthas 84.5 4.4 9.5E-05 24.1 5.2 56 9-74 16-72 (82)
94 PF00564 PB1: PB1 domain; Int 84.4 3.8 8.3E-05 24.0 4.9 39 9-55 9-48 (84)
95 KOG0012|consensus 83.9 2.3 4.9E-05 33.1 4.5 58 9-74 11-70 (380)
96 PF11069 DUF2870: Protein of u 83.7 1.8 4E-05 27.7 3.4 38 50-87 3-41 (98)
97 PRK08364 sulfur carrier protei 82.4 7.6 0.00017 22.7 5.6 50 8-74 9-60 (70)
98 KOG4250|consensus 81.9 6.7 0.00015 33.1 6.8 48 5-60 319-366 (732)
99 KOG1364|consensus 81.4 1.5 3.3E-05 33.8 2.8 64 2-72 279-347 (356)
100 KOG0007|consensus 80.5 0.88 1.9E-05 34.5 1.2 49 8-64 290-339 (341)
101 PF06234 TmoB: Toluene-4-monoo 80.2 6.8 0.00015 24.5 4.9 59 12-73 16-77 (85)
102 PF11620 GABP-alpha: GA-bindin 79.8 5.5 0.00012 25.0 4.4 55 12-74 4-58 (88)
103 cd06411 PB1_p51 The PB1 domain 79.0 5.2 0.00011 24.6 4.1 37 12-56 8-44 (78)
104 COG5100 NPL4 Nuclear pore prot 78.1 13 0.00028 29.9 6.9 69 3-78 3-77 (571)
105 cd05992 PB1 The PB1 domain is 76.3 13 0.00027 21.6 5.7 45 2-55 2-47 (81)
106 KOG3391|consensus 75.9 3.2 6.8E-05 28.3 2.7 61 20-83 61-137 (151)
107 cd06396 PB1_NBR1 The PB1 domai 75.2 16 0.00034 22.6 5.5 33 1-34 1-35 (81)
108 PLN02593 adrenodoxin-like ferr 72.2 23 0.0005 22.8 6.1 51 1-51 1-51 (117)
109 PF10790 DUF2604: Protein of U 72.2 19 0.0004 21.7 5.7 71 7-84 2-73 (76)
110 KOG2507|consensus 71.8 7.1 0.00015 31.3 4.1 65 1-73 315-384 (506)
111 KOG2689|consensus 71.4 6.8 0.00015 29.5 3.8 64 2-73 212-280 (290)
112 PF02192 PI3K_p85B: PI3-kinase 68.9 6.3 0.00014 24.0 2.7 21 13-33 2-22 (78)
113 cd01817 RGS12_RBD Ubiquitin do 68.5 24 0.00051 21.4 5.4 45 4-56 3-47 (73)
114 cd06408 PB1_NoxR The PB1 domai 66.6 29 0.00062 21.6 6.6 52 3-65 3-55 (86)
115 KOG3309|consensus 65.9 9.2 0.0002 26.5 3.2 29 1-29 44-72 (159)
116 PF14533 USP7_C2: Ubiquitin-sp 65.8 24 0.00051 25.0 5.5 52 11-67 34-90 (213)
117 cd00565 ThiS ThiaminS ubiquiti 65.5 17 0.00037 20.6 4.0 53 7-74 3-55 (65)
118 PF14453 ThiS-like: ThiS-like 62.7 24 0.00052 20.3 4.2 43 13-74 8-50 (57)
119 PF11816 DUF3337: Domain of un 61.6 23 0.00049 26.8 5.0 66 14-79 251-326 (331)
120 PF10407 Cytokin_check_N: Cdc1 60.0 12 0.00027 22.5 2.8 24 11-34 3-26 (73)
121 PF00794 PI3K_rbd: PI3-kinase 59.5 22 0.00047 22.2 4.0 32 2-33 18-50 (106)
122 smart00143 PI3K_p85B PI3-kinas 59.5 12 0.00026 22.9 2.7 21 13-33 2-22 (78)
123 PRK11130 moaD molybdopterin sy 58.3 37 0.0008 20.1 5.2 59 9-76 14-73 (81)
124 PF02824 TGS: TGS domain; Int 57.6 29 0.00063 19.5 4.0 29 3-33 1-29 (60)
125 PF02196 RBD: Raf-like Ras-bin 57.4 37 0.00081 19.9 7.1 55 3-65 3-59 (71)
126 KOG3439|consensus 56.8 39 0.00084 22.2 4.8 50 1-58 31-84 (116)
127 PF00788 RA: Ras association ( 55.5 40 0.00087 19.7 4.6 44 3-52 5-52 (93)
128 cd01778 RASSF1_RA Ubiquitin-li 55.4 52 0.0011 20.9 6.8 32 3-34 9-40 (96)
129 PF11148 DUF2922: Protein of u 53.9 34 0.00075 19.8 4.0 32 1-32 3-37 (69)
130 cd06410 PB1_UP2 Uncharacterize 52.6 56 0.0012 20.5 5.5 30 5-34 17-46 (97)
131 PF08825 E2_bind: E2 binding d 50.9 33 0.00073 21.0 3.7 60 15-76 1-67 (84)
132 PF02505 MCR_D: Methyl-coenzym 50.8 28 0.00061 24.0 3.6 43 13-67 77-120 (153)
133 cd01777 SNX27_RA Ubiquitin dom 49.4 46 0.00099 20.8 4.1 33 1-33 2-34 (87)
134 PF06487 SAP18: Sin3 associate 47.4 37 0.0008 22.3 3.7 58 17-74 43-115 (120)
135 PF08783 DWNN: DWNN domain; I 45.0 53 0.0011 19.8 3.8 26 8-33 6-33 (74)
136 PRK08453 fliD flagellar cappin 44.3 36 0.00079 28.6 4.0 26 7-32 134-159 (673)
137 KOG4572|consensus 43.4 53 0.0011 28.9 4.8 63 9-79 3-67 (1424)
138 TIGR03260 met_CoM_red_D methyl 43.2 60 0.0013 22.3 4.3 41 15-67 78-118 (150)
139 KOG2561|consensus 42.8 22 0.00047 28.9 2.4 51 14-72 53-103 (568)
140 cd00559 Cyanase_C Cyanase C-te 42.1 46 0.001 20.0 3.2 35 25-59 21-65 (69)
141 PF06200 tify: tify domain; I 41.2 31 0.00066 18.0 2.1 15 44-58 3-17 (36)
142 PF14454 Prok_Ub: Prokaryotic 41.1 25 0.00055 20.8 1.9 21 17-37 20-40 (65)
143 smart00144 PI3K_rbd PI3-kinase 40.1 89 0.0019 19.7 4.6 24 11-34 29-52 (108)
144 PF00894 Luteo_coat: Luteoviru 38.9 94 0.002 21.0 4.6 63 2-69 47-128 (138)
145 PF12747 DdrB: DdrB-like prote 38.5 1.1E+02 0.0025 20.3 4.9 32 2-33 3-34 (123)
146 PTZ00490 Ferredoxin superfamil 37.9 67 0.0014 21.7 3.9 28 1-28 36-63 (143)
147 COG4055 McrD Methyl coenzyme M 37.5 1.1E+02 0.0024 21.2 4.9 42 14-67 86-128 (165)
148 cd01768 RA RA (Ras-associating 37.3 88 0.0019 18.3 7.5 32 3-34 2-36 (87)
149 PF14451 Ub-Mut7C: Mut7-C ubiq 36.9 98 0.0021 18.8 6.4 52 10-78 22-74 (81)
150 cd06404 PB1_aPKC PB1 domain is 35.2 92 0.002 19.3 3.9 28 8-35 7-34 (83)
151 PF03931 Skp1_POZ: Skp1 family 35.2 26 0.00056 19.8 1.3 32 2-33 2-33 (62)
152 KOG3751|consensus 34.9 68 0.0015 26.6 4.0 32 2-33 190-221 (622)
153 TIGR00673 cynS cyanate hydrata 33.7 57 0.0012 22.3 3.0 35 25-59 102-146 (150)
154 PRK02866 cyanate hydratase; Va 33.6 58 0.0013 22.2 3.0 35 25-59 99-143 (147)
155 KOG4261|consensus 33.4 75 0.0016 27.7 4.2 65 3-72 4-75 (1003)
156 COG2080 CoxS Aerobic-type carb 33.3 77 0.0017 21.9 3.6 52 7-63 7-62 (156)
157 PTZ00380 microtubule-associate 33.3 58 0.0013 21.5 2.9 43 16-67 46-89 (121)
158 PF02560 Cyanate_lyase: Cyanat 32.9 36 0.00078 20.7 1.7 35 25-59 25-69 (73)
159 cd01775 CYR1_RA Ubiquitin doma 31.7 1.4E+02 0.003 19.0 4.6 31 3-33 5-35 (97)
160 PF12436 USP7_ICP0_bdg: ICP0-b 31.6 99 0.0022 22.3 4.2 44 1-52 177-223 (249)
161 PF08154 NLE: NLE (NUC135) dom 30.8 1.1E+02 0.0024 17.5 5.3 54 1-60 2-59 (65)
162 PF13670 PepSY_2: Peptidase pr 30.5 91 0.002 18.3 3.3 20 2-21 57-76 (83)
163 COG1551 CsrA RNA-binding globa 29.1 1.4E+02 0.003 18.1 4.3 33 1-33 18-50 (73)
164 PF11816 DUF3337: Domain of un 28.5 65 0.0014 24.3 2.9 29 16-56 301-329 (331)
165 cd01612 APG12_C Ubiquitin-like 28.0 1.5E+02 0.0032 18.1 5.2 71 1-79 2-80 (87)
166 PF02991 Atg8: Autophagy prote 27.7 1.7E+02 0.0036 18.6 4.3 45 15-67 37-82 (104)
167 PF12039 DUF3525: Protein of u 27.6 74 0.0016 24.6 3.0 33 46-80 24-65 (453)
168 COG3046 Uncharacterized protei 27.3 44 0.00096 27.0 1.8 27 14-40 191-217 (505)
169 PRK09908 xanthine dehydrogenas 27.2 96 0.0021 21.4 3.3 26 3-29 9-34 (159)
170 PF00111 Fer2: 2Fe-2S iron-sul 26.7 86 0.0019 17.8 2.7 50 7-58 2-53 (78)
171 KOG2660|consensus 26.5 46 0.00099 25.7 1.7 47 15-67 168-214 (331)
172 TIGR03193 4hydroxCoAred 4-hydr 25.9 98 0.0021 21.1 3.1 24 7-30 5-29 (148)
173 PF14044 NETI: NETI protein 25.8 1.1E+02 0.0024 17.6 2.9 19 15-33 2-20 (57)
174 cd01611 GABARAP Ubiquitin doma 25.7 1.4E+02 0.0031 19.2 3.7 47 13-67 43-90 (112)
175 smart00314 RA Ras association 25.6 1.5E+02 0.0033 17.4 4.6 25 10-34 15-39 (90)
176 TIGR03738 PRTRC_C PRTRC system 25.5 70 0.0015 19.0 2.1 22 16-37 18-39 (66)
177 cd06398 PB1_Joka2 The PB1 doma 25.4 1.7E+02 0.0037 18.0 6.1 39 9-55 8-52 (91)
178 PF14533 USP7_C2: Ubiquitin-sp 25.3 59 0.0013 22.9 2.0 24 10-33 132-155 (213)
179 PF01863 DUF45: Protein of unk 25.2 2.2E+02 0.0048 19.1 5.1 32 2-33 2-33 (205)
180 PRK13552 frdB fumarate reducta 24.1 1.5E+02 0.0032 21.4 4.0 23 11-33 24-46 (239)
181 PRK11433 aldehyde oxidoreducta 23.9 1.3E+02 0.0027 21.9 3.5 23 3-26 52-74 (217)
182 PRK06488 sulfur carrier protei 23.9 1.5E+02 0.0031 16.6 6.0 52 7-74 4-55 (65)
183 KOG4842|consensus 23.6 26 0.00056 26.3 -0.0 48 8-64 10-57 (278)
184 PRK05659 sulfur carrier protei 23.6 1.5E+02 0.0031 16.5 5.1 39 7-59 4-42 (66)
185 PRK05841 flgE flagellar hook p 23.5 94 0.002 25.9 3.1 33 1-33 249-290 (603)
186 PF14807 AP4E_app_platf: Adapt 23.5 97 0.0021 19.8 2.6 61 18-86 28-89 (104)
187 PF08207 EFP_N: Elongation fac 23.5 63 0.0014 18.1 1.6 21 2-22 36-57 (58)
188 PHA01814 hypothetical protein 23.3 1E+02 0.0022 20.4 2.7 31 19-60 99-129 (137)
189 PF07566 DUF1543: Domain of Un 23.3 50 0.0011 18.3 1.1 24 15-38 8-31 (52)
190 COG2029 Uncharacterized conser 22.9 31 0.00068 24.4 0.3 21 50-70 12-32 (189)
191 cd08545 YcnI_like Reeler-like 22.2 53 0.0011 22.4 1.2 58 3-64 36-112 (152)
192 PLN02828 formyltetrahydrofolat 21.7 18 0.00039 26.9 -1.2 40 12-58 219-258 (268)
193 TIGR02008 fdx_plant ferredoxin 21.6 2E+02 0.0044 17.4 8.3 54 2-57 4-57 (97)
194 PF14847 Ras_bdg_2: Ras-bindin 21.1 2.2E+02 0.0048 18.1 3.9 33 2-34 2-34 (105)
195 COG1978 Uncharacterized protei 20.7 1.8E+02 0.0039 19.9 3.6 31 3-33 52-82 (152)
196 TIGR01683 thiS thiamine biosyn 20.3 1.8E+02 0.0038 16.2 4.4 52 8-74 3-54 (64)
197 PLN00036 40S ribosomal protein 20.2 46 0.001 24.8 0.7 36 44-79 175-210 (261)
198 KOG1839|consensus 20.1 4E+02 0.0087 24.4 6.3 74 3-85 35-109 (1236)
199 PF12949 HeH: HeH/LEM domain; 20.1 70 0.0015 16.5 1.2 15 19-33 2-16 (35)
200 PF10241 KxDL: Uncharacterized 20.0 92 0.002 19.0 1.9 16 22-37 72-87 (88)
No 1
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.96 E-value=2.6e-28 Score=159.06 Aligned_cols=89 Identities=45% Similarity=0.798 Sum_probs=77.2
Q ss_pred CEEEEEecCCC-EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc----E
Q psy5872 1 INLRLILVSGK-TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT----T 75 (91)
Q Consensus 1 i~l~~~~~~g~-~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~----~ 75 (91)
|+|+||+++|. +.++.+++++||++||++|.++||++|.. .+.+++.+||||+||+|+|+.||++|++..|+. +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~-~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEE-RPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSS-TT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCcccccc-CCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 68999999997 99999999999999999999999999974 668899999999999999999999999988776 8
Q ss_pred EEEEEecCCCCCCCC
Q psy5872 76 VMHLVPRENLPEPNS 90 (91)
Q Consensus 76 tvhlv~~~~~p~~~~ 90 (91)
+||||++++.++++.
T Consensus 82 vmHlvvrp~~~~~~~ 96 (111)
T PF13881_consen 82 VMHLVVRPNAPEPNE 96 (111)
T ss_dssp EEEEEE-SSSSSSSS
T ss_pred EEEEEecCCCCCccc
Confidence 999999999998875
No 2
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.93 E-value=1.8e-26 Score=150.15 Aligned_cols=87 Identities=21% Similarity=0.411 Sum_probs=77.4
Q ss_pred CEEEEEecCC-CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCC--CCcEEEEEcCeecCCCCcccccCCC----CCC
Q psy5872 1 INLRLILVSG-KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAK--ADILRLIYQGRFLHSNVTLGALGLT----CSK 73 (91)
Q Consensus 1 i~l~~~~~~g-~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~--~~~qrLI~~Gk~L~D~~tL~~~~i~----~~~ 73 (91)
|.|+||+.+| +..++.+++++||++||++|++.||.+| ++ +| +++|||||+||+|+|+.||++|++. .+.
T Consensus 5 ~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~k--e~-~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 5 IEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDK--EV-GPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGG 81 (113)
T ss_pred EEEEEEccCCCccCccccChhhHHHHHHHHHHHhccccc--cc-CCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCC
Confidence 6899999999 8999999999999999999999999864 44 55 9999999999999999999999933 236
Q ss_pred cEEEEEEecCCCCCCCC
Q psy5872 74 TTVMHLVPRENLPEPNS 90 (91)
Q Consensus 74 ~~tvhlv~~~~~p~~~~ 90 (91)
.+|||||+|++.+++++
T Consensus 82 ~~TmHvvlr~~~~~~~~ 98 (113)
T cd01814 82 VITMHVVVQPPLADKKT 98 (113)
T ss_pred ceEEEEEecCCCCCccc
Confidence 78999999999888764
No 3
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.89 E-value=2e-23 Score=128.91 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=63.5
Q ss_pred CEEEEEecCCCE--EEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccC--CCCCCcEE
Q psy5872 1 INLRLILVSGKT--KEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG--LTCSKTTV 76 (91)
Q Consensus 1 i~l~~~~~~g~~--~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~--i~~~~~~t 76 (91)
|+|.||+++|++ +++++++++||++||++|++.+|.. +++++|||||+||+|+|+.||++|+ ++ +..|
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~------~~~~~QrLIy~GKiLkD~~tL~~~~~~~~--~~~t 73 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSK------PLEQDQRLIYSGKLLPDHLKLRDVLRKQD--EYHM 73 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCC------CChhHeEEEEcCeeccchhhHHHHhhccc--CCce
Confidence 689999999998 4555589999999999999976532 5689999999999999999999997 76 4468
Q ss_pred EEEEec
Q psy5872 77 MHLVPR 82 (91)
Q Consensus 77 vhlv~~ 82 (91)
||||+.
T Consensus 74 iHLV~~ 79 (79)
T cd01790 74 VHLVCA 79 (79)
T ss_pred EEEEeC
Confidence 999973
No 4
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.88 E-value=2.8e-22 Score=121.10 Aligned_cols=73 Identities=19% Similarity=0.322 Sum_probs=67.3
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
..|.||+.+|+++++++++++||++||++|++. ++ +++++|||+|+||.|+|+.||++|||++++ ++|++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~-------~g-i~~~~q~L~~~G~~L~d~~~L~~~~i~~~~--~l~l~ 70 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEH-------LN-VPEEQQRLLFKGKALADDKRLSDYSIGPNA--KLNLV 70 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-------HC-CCHHHeEEEECCEECCCCCCHHHCCCCCCC--EEEEE
Confidence 368999999999999999999999999999995 44 999999999999999999999999999776 79999
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
+|+
T Consensus 71 ~~~ 73 (74)
T cd01807 71 VRP 73 (74)
T ss_pred EcC
Confidence 885
No 5
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.87 E-value=5.3e-22 Score=119.63 Aligned_cols=70 Identities=19% Similarity=0.356 Sum_probs=64.0
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEec
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVPR 82 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~~ 82 (91)
|++|+.+|+++++++++++||++||++|++. ++ +++++|||+|+|+.|+|+.+|++|+|+.+ ++|||++.
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~-------~g-i~~~~q~Li~~G~~L~D~~~l~~~~i~~~--~tv~~~~~ 70 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAA-------EG-VDPCCQRWFFSGKLLTDKTRLQETKIQKD--YVVQVIVN 70 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHH-------hC-CCHHHeEEEECCeECCCCCCHHHcCCCCC--CEEEEEeC
Confidence 5789999999999999999999999999995 55 89999999999999999999999999955 48999763
No 6
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.85 E-value=3.9e-21 Score=114.86 Aligned_cols=70 Identities=21% Similarity=0.335 Sum_probs=64.1
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEec
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVPR 82 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~~ 82 (91)
|.||++.|+++++++++++||++||++|++. .+ +++++|+|+|+|+.|+|+.||++|||++|+ ++|++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-------~g-i~~~~q~Li~~G~~L~d~~~l~~~~i~~~s--tl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKR-------QG-VPPDQLRVIFAGKELRNTTTIQECDLGQQS--ILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHH-------HC-CCHHHeEEEECCeECCCCCcHHHcCCCCCC--EEEEEeC
Confidence 4689999999999999999999999999995 44 899999999999999999999999999665 7999875
No 7
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.85 E-value=5.8e-21 Score=117.21 Aligned_cols=73 Identities=15% Similarity=0.293 Sum_probs=66.2
Q ss_pred EEEEEecCCCE-EEEE-eCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 2 NLRLILVSGKT-KEFL-FSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 2 ~l~~~~~~g~~-~~~~-v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
.|.||+++|++ ++++ +++++||++||++|++. ++ +++++|||||+||.|+|+.||++|||++++ ++|+
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~-------~g-i~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~--~i~l 71 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQEL-------FN-VEPECQRLFYRGKQMEDGHTLFDYNVGLND--IIQL 71 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHH-------hC-CCHHHeEEEeCCEECCCCCCHHHcCCCCCC--EEEE
Confidence 68999999997 7895 89999999999999995 45 999999999999999999999999999765 7999
Q ss_pred EecCC
Q psy5872 80 VPREN 84 (91)
Q Consensus 80 v~~~~ 84 (91)
++|+.
T Consensus 72 ~~~~~ 76 (78)
T cd01797 72 LVRQD 76 (78)
T ss_pred EEecC
Confidence 98873
No 8
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.85 E-value=8.5e-21 Score=114.70 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=62.8
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEe
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVP 81 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~ 81 (91)
.|.+|+ ++++++++++++||++||++|++. ++ +|+++|||||+||.|+|+.||++|||+++. |+|+++
T Consensus 2 qi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~-------~g-ip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~--tl~l~~ 69 (74)
T cd01793 2 QLFVRA--QNTHTLEVTGQETVSDIKAHVAGL-------EG-IDVEDQVLLLAGVPLEDDATLGQCGVEELC--TLEVAG 69 (74)
T ss_pred EEEEEC--CCEEEEEECCcCcHHHHHHHHHhh-------hC-CCHHHEEEEECCeECCCCCCHHHcCCCCCC--EEEEEE
Confidence 577776 479999999999999999999995 45 999999999999999999999999999654 799998
Q ss_pred cC
Q psy5872 82 RE 83 (91)
Q Consensus 82 ~~ 83 (91)
|.
T Consensus 70 ~l 71 (74)
T cd01793 70 RL 71 (74)
T ss_pred ec
Confidence 75
No 9
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.85 E-value=6.1e-21 Score=115.98 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=64.1
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
+.|+|++..|+.+.+++++++||++||++|++. .+ ++++.|||||+|++|+|+.||++|||++|+ +|||-
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~-------~~-~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~s--tv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ-------TG-TRPEKIVLKKWYTIFKDHISLGDYEIHDGM--NLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHH-------hC-CChHHEEEEeCCcCCCCCCCHHHcCCCCCC--EEEEE
Confidence 468999999999999999999999999999996 33 899999999999999999999999999775 78874
No 10
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.84 E-value=1.4e-20 Score=112.86 Aligned_cols=71 Identities=24% Similarity=0.305 Sum_probs=64.3
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|.|.||+.+|+ .++++++++||++||++|++. ++ +++++|||+|+||.|+|+.||++||+++|+ ++|++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~-------~~-i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~s--tl~l~ 69 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKK-------FK-ANQEQLVLIFAGKILKDTDTLTQHNIKDGL--TVHLV 69 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHH-------hC-CCHHHEEEEECCeEcCCCCcHHHcCCCCCC--EEEEE
Confidence 67999999997 489999999999999999996 44 899999999999999999999999999665 79988
Q ss_pred ec
Q psy5872 81 PR 82 (91)
Q Consensus 81 ~~ 82 (91)
+|
T Consensus 70 ~~ 71 (71)
T cd01808 70 IK 71 (71)
T ss_pred EC
Confidence 75
No 11
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.84 E-value=1.4e-20 Score=113.78 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=64.7
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEec
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVPR 82 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~~ 82 (91)
|.||++.|+++++++++++||++||++|++. ++ +++++|+|+|+||.|+|+.||++|||++++ ++|++++
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-------~g-i~~~~q~L~~~G~~L~D~~tL~~~~i~~~~--tl~l~~~ 70 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQR-------ER-VQADQFWLSFEGRPMEDEHPLGEYGLKPGC--TVFMNLR 70 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHH-------hC-CCHHHeEEEECCEECCCCCCHHHcCCCCCC--EEEEEEE
Confidence 4689999999999999999999999999995 45 999999999999999999999999999776 6888776
Q ss_pred C
Q psy5872 83 E 83 (91)
Q Consensus 83 ~ 83 (91)
.
T Consensus 71 l 71 (74)
T cd01810 71 L 71 (74)
T ss_pred c
Confidence 4
No 12
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.83 E-value=2.5e-20 Score=119.88 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=66.5
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEe
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVP 81 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~ 81 (91)
.|.||+++|+++.+++++++||++||++|++. ++ +++++|||+|+||.|+|+.+|++|+|++++ ++|+++
T Consensus 29 ~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~-------~g-ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~s--tL~l~~ 98 (103)
T cd01802 29 ELFIETLTGTCFELRVSPFETVISVKAKIQRL-------EG-IPVAQQHLIWNNMELEDEYCLNDYNISEGC--TLKLVL 98 (103)
T ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-------hC-CChHHEEEEECCEECCCCCcHHHcCCCCCC--EEEEEE
Confidence 68999999999999999999999999999996 45 999999999999999999999999999775 789887
Q ss_pred cC
Q psy5872 82 RE 83 (91)
Q Consensus 82 ~~ 83 (91)
+-
T Consensus 99 ~l 100 (103)
T cd01802 99 AM 100 (103)
T ss_pred ec
Confidence 74
No 13
>PTZ00044 ubiquitin; Provisional
Probab=99.83 E-value=4.5e-20 Score=111.36 Aligned_cols=73 Identities=19% Similarity=0.448 Sum_probs=66.8
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
..|.||+++|+++++++++++||++||++|++. .+ +|+++|||+|+|+.|+|+.+|++|+++++. ++|++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~-------~g-i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~--~i~l~ 70 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEK-------EG-IDVKQIRLIYSGKQMSDDLKLSDYKVVPGS--TIHMV 70 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-------HC-CCHHHeEEEECCEEccCCCcHHHcCCCCCC--EEEEE
Confidence 368899999999999999999999999999996 44 999999999999999999999999999775 78888
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 71 ~~~ 73 (76)
T PTZ00044 71 LQL 73 (76)
T ss_pred EEc
Confidence 774
No 14
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.82 E-value=6.8e-20 Score=112.40 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=66.5
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEE--EEcCeecCCCCcccccCCCCCCcEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRL--IYQGRFLHSNVTLGALGLTCSKTTVMH 78 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrL--I~~Gk~L~D~~tL~~~~i~~~~~~tvh 78 (91)
+.|+|++..|+++.+++++++||++||++|++. .+ +++++||| +|+|+.|+|+.||++||+++|+ ++|
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~-------~~-i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs--~l~ 72 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQK-------IG-VPAFQQRLAHLDSREVLQDGVPLVSQGLGPGS--TVL 72 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHH-------hC-CCHHHEEEEeccCCCCCCCCCCHHHcCCCCCC--EEE
Confidence 478999999999999999999999999999996 34 89999999 9999999999999999999776 688
Q ss_pred EEecC
Q psy5872 79 LVPRE 83 (91)
Q Consensus 79 lv~~~ 83 (91)
+++++
T Consensus 73 l~~~~ 77 (80)
T cd01792 73 LVVQN 77 (80)
T ss_pred EEEEc
Confidence 88775
No 15
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.82 E-value=1.3e-19 Score=107.62 Aligned_cols=72 Identities=24% Similarity=0.409 Sum_probs=66.2
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|.|.+|+++|+++++++++++||++||++|++. .+ ++++.|||+|.|+.|+|+.+|++||+++|+ ++|++
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~-------~g-i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~--~l~l~ 70 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEE-------VG-IPVEQQRLIYSGRVLKDDETLSEYKVEDGH--TIHLV 70 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-------HC-cCHHHeEEEECCEECCCcCcHHHCCCCCCC--EEEEE
Confidence 689999999999999999999999999999996 33 899999999999999999999999999765 79998
Q ss_pred ec
Q psy5872 81 PR 82 (91)
Q Consensus 81 ~~ 82 (91)
.|
T Consensus 71 ~~ 72 (72)
T cd01809 71 KR 72 (72)
T ss_pred eC
Confidence 65
No 16
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.81 E-value=2e-19 Score=108.63 Aligned_cols=74 Identities=14% Similarity=0.332 Sum_probs=65.6
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccC--CCCcEEEEEcCeecCCCCcccccCCCCCCcEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVA--KADILRLIYQGRFLHSNVTLGALGLTCSKTTVMH 78 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~--~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvh 78 (91)
..|.|++.+|+++.+++++++||++||++|++. .+ + +++.|||+|+|+.|+|+.+|++|||++|+ ++|
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~-------~~-i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~--~i~ 70 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEE-------KG-CDYPPEQQKLIYSGKILKDDTTLEEYKIDEKD--FVV 70 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHh-------hC-CCCChhHeEEEECCEEccCCCCHHHcCCCCCC--EEE
Confidence 368999999999999999999999999999996 33 6 89999999999999999999999999776 566
Q ss_pred EEecCC
Q psy5872 79 LVPREN 84 (91)
Q Consensus 79 lv~~~~ 84 (91)
++++.+
T Consensus 71 ~~~~~~ 76 (77)
T cd01805 71 VMVSKP 76 (77)
T ss_pred EEEecC
Confidence 666653
No 17
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.81 E-value=8.7e-20 Score=108.04 Aligned_cols=68 Identities=29% Similarity=0.483 Sum_probs=62.6
Q ss_pred EecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEecC
Q psy5872 6 ILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVPRE 83 (91)
Q Consensus 6 ~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~~~ 83 (91)
|+++|+.+++++++++||++||++|++. .+ ++++.|+|+|.|+.|+|+.||++|||++|+ +||+++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~-------~~-~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~--~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEE-------TG-IPPEQQRLIYNGKELDDDKTLSDYGIKDGS--TIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHH-------HT-STGGGEEEEETTEEESTTSBTGGGTTSTTE--EEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccc-------cc-cccccceeeeeeecccCcCcHHHcCCCCCC--EEEEEEec
Confidence 6889999999999999999999999996 23 899999999999999999999999999765 78988876
No 18
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.81 E-value=2.6e-19 Score=107.34 Aligned_cols=73 Identities=26% Similarity=0.400 Sum_probs=66.8
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
+.|+||+.+|+++.+++++++||++||++|++. .+ ++++.|||+|+|+.|+|+.||++|++++|+ ++|++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~-------~g-~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~--~i~l~ 70 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-------EG-IPPQQQRLIYSGKQMNDDKTAADYKLEGGS--VLHLV 70 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHh-------hC-CChhhEEEEECCeEccCCCCHHHcCCCCCC--EEEEE
Confidence 468999999999999999999999999999995 34 899999999999999999999999999775 79998
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 71 ~~~ 73 (76)
T cd01806 71 LAL 73 (76)
T ss_pred EEc
Confidence 874
No 19
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.81 E-value=1.7e-19 Score=110.45 Aligned_cols=72 Identities=21% Similarity=0.325 Sum_probs=64.2
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
.+|+||+..|+.+++++++++||++||++|++. .+ +++++|||+|+|+.|+|+ +|++|||++|+ ++|++
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~-------~~-~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~--~i~l~ 70 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQR-------LK-VPKERLALLHRETRLSSG-KLQDLGLGDGS--KLTLV 70 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHH-------hC-CChHHEEEEECCcCCCCC-cHHHcCCCCCC--EEEEE
Confidence 368999999999999999999999999999996 34 899999999999999998 99999999776 67776
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
...
T Consensus 71 ~~~ 73 (78)
T cd01804 71 PTV 73 (78)
T ss_pred eec
Confidence 543
No 20
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.80 E-value=1.8e-19 Score=108.42 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=60.7
Q ss_pred EEEEec-CCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCC-CcccccCCCCCCcEEEEE
Q psy5872 3 LRLILV-SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSN-VTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 3 l~~~~~-~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~~~~~tvhl 79 (91)
|+|++. .|+++.+++++++||++||++|++. +| +|+++|||+|+||.|+|+ .+|++|||++|+ ++||
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~-------~g-ip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~--~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAE-------SG-IPASQQQLIYNGRELVDNKRLLALYGVKDGD--LVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHH-------hC-CCHHHeEEEECCeEccCCcccHHHcCCCCCC--EEEE
Confidence 578999 9999999999999999999999995 45 999999999999999887 789999999776 5775
No 21
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.79 E-value=6e-19 Score=105.73 Aligned_cols=73 Identities=27% Similarity=0.434 Sum_probs=66.4
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
..|.||+.+|+++.+++++++||++||++|++. .+ ++++.|||+|.|+.|+|+.||++||+++|+ ++|++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~-------~g-~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~--~i~l~ 70 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLV 70 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHH-------hC-CCHHHeEEEECCEECCCCCcHHHcCCCCCC--EEEEE
Confidence 368999999999999999999999999999995 44 899999999999999999999999999765 78888
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 71 ~~~ 73 (76)
T cd01803 71 LRL 73 (76)
T ss_pred EEc
Confidence 874
No 22
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.76 E-value=2.6e-18 Score=104.43 Aligned_cols=67 Identities=21% Similarity=0.397 Sum_probs=60.8
Q ss_pred cCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEecCC
Q psy5872 8 VSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVPREN 84 (91)
Q Consensus 8 ~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~~~~ 84 (91)
++|+++++++++++||++||++|++. .+ +|++.|||+|.|+.|+|+.||++|+|++|+ +||++++.+
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~-------~g-ip~~~q~L~~~G~~L~d~~tL~~~~i~~g~--~l~v~~~~~ 71 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEE-------TG-MPAGKQKLQYEGIFIKDSNSLAYYNLANGT--IIHLQLKER 71 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHH-------HC-CCHHHEEEEECCEEcCCCCcHHHcCCCCCC--EEEEEEecC
Confidence 57999999999999999999999995 44 999999999999999999999999999776 688888754
No 23
>KOG0005|consensus
Probab=99.75 E-value=8.6e-19 Score=103.11 Aligned_cols=69 Identities=28% Similarity=0.443 Sum_probs=64.0
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
.++.++++|+.+.++++|+++|+++|++|++. +| +|+.+|||||+||++.|+.|-++|++..| +++|+|
T Consensus 2 ~iKvktLt~KeIeidIep~DkverIKErvEEk-------eG-IPp~qqrli~~gkqm~DD~tA~~Y~~~~G--SVlHlv 70 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-------EG-IPPQQQRLIYAGKQMNDDKTAAHYNLLGG--SVLHLV 70 (70)
T ss_pred eeeEeeeccceEEEeeCcchHHHHHHHHhhhh-------cC-CCchhhhhhhccccccccccHHHhhhccc--eeEeeC
Confidence 47899999999999999999999999999995 67 99999999999999999999999999855 479985
No 24
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.74 E-value=1.3e-17 Score=99.01 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=62.7
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|.|++|.. |+.+++++++++||++||++|++. .+ ++++.|||+|.|+.|+|+.+|++||+++|+ ++|++
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~-------~g-i~~~~q~L~~~g~~l~d~~~L~~~~i~~g~--~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPV-------TG-VEPRDQKLIFKGKERDDAETLDMSGVKDGS--KVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHh-------hC-CChHHeEEeeCCcccCccCcHHHcCCCCCC--EEEEe
Confidence 68999997 999999999999999999999995 44 899999999999999999999999999776 57765
No 25
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.72 E-value=1.1e-17 Score=102.48 Aligned_cols=58 Identities=22% Similarity=0.449 Sum_probs=48.8
Q ss_pred eCC-CCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEe
Q psy5872 17 FSP-SDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVP 81 (91)
Q Consensus 17 v~~-~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~ 81 (91)
+.| ++||++||++|++.++ ++.+++++|||||+||+|+|+.||++|||++|+ ++|||.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~-----egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gs--tlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLP-----DSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGS--TIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhc-----cCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCC--EEEEEe
Confidence 344 7899999999999753 232459999999999999999999999999775 799874
No 26
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=4.1e-17 Score=124.62 Aligned_cols=74 Identities=12% Similarity=0.255 Sum_probs=64.1
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
+.|+||+++|+++.++|++++||++||++|++.... . .+++++|||||+||+|+|+.||++|||++++++++++
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~----~-~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv 74 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGK----D-AYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMV 74 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCC----C-CCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEe
Confidence 479999999999999999999999999999996210 0 2789999999999999999999999999888644444
No 27
>KOG0004|consensus
Probab=99.69 E-value=1.9e-17 Score=112.79 Aligned_cols=71 Identities=27% Similarity=0.428 Sum_probs=65.3
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEec
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVPR 82 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~~ 82 (91)
+-++++.|+++.+++++++||..+|.+|++. ++ ||+++|||||+|+.|+|+.||+||+|+ ..+|+||+++
T Consensus 3 ifVk~l~~kti~~eve~~~ti~~~Kakiq~~-------eg-Ip~dqqrlifag~qLedgrtlSDY~Iq--kestl~l~l~ 72 (156)
T KOG0004|consen 3 IFVKTLTGKTITLEVEANDTIDNVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQ--KESTLHLVLR 72 (156)
T ss_pred cchhhccccceeeeecccccHHHHHHhhhcc-------cC-CCchhhhhhhhhcccccCCcccccccc--ccceEEEEEE
Confidence 5678899999999999999999999999985 67 999999999999999999999999998 5568999987
Q ss_pred C
Q psy5872 83 E 83 (91)
Q Consensus 83 ~ 83 (91)
.
T Consensus 73 l 73 (156)
T KOG0004|consen 73 L 73 (156)
T ss_pred e
Confidence 4
No 28
>KOG0003|consensus
Probab=99.68 E-value=4.9e-18 Score=110.21 Aligned_cols=70 Identities=30% Similarity=0.489 Sum_probs=63.7
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEec
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVPR 82 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~~ 82 (91)
+-.+++.|++..++++|++||..||.+|.+. +| +++++|+|||+||+|+|+.||++|||+ ..+|+|++++
T Consensus 3 ~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~-------~G-i~~~~~~L~~~~k~LED~~Tla~Y~i~--~~~Tl~~~~r 72 (128)
T KOG0003|consen 3 IFVKTLTGKTITLEVEPSDTIDNVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLADYNIQ--KESTLHLVLR 72 (128)
T ss_pred EEEEEeeCceEEEEecccchHHHHHHHhccc-------cC-CCHHHHHHHhcccccccCCcccccCcc--chhhhhhhHH
Confidence 4567899999999999999999999999995 66 999999999999999999999999998 4457998876
No 29
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.68 E-value=2e-16 Score=96.13 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=59.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEE---cCeecCCCCcccccCCCCCCcEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIY---QGRFLHSNVTLGALGLTCSKTTVM 77 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~---~Gk~L~D~~tL~~~~i~~~~~~tv 77 (91)
|.|+++ ..|+++++++++++||++||++|++. .+ +|+++||||| +|+.|+|+.+|++|+|++|+. +
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~-------tg-vp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~--i 69 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTL-------TG-VLPERQKLLGLKVKGKPAEDDVKISALKLKPNTK--I 69 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHH-------HC-CCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCE--E
Confidence 455664 47899999999999999999999996 34 9999999997 999999999999999998874 5
Q ss_pred EE
Q psy5872 78 HL 79 (91)
Q Consensus 78 hl 79 (91)
||
T Consensus 70 ~l 71 (74)
T cd01813 70 MM 71 (74)
T ss_pred EE
Confidence 54
No 30
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.67 E-value=6e-16 Score=96.36 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=67.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|.|++++.+|+.+.+++.+++|++.||+++++. ++ +++++|||+|.|+.|+|+.|+++|++++|+ ++|++
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~-------~g-i~~~~~rf~f~G~~L~~~~T~~~l~m~d~d--~I~v~ 81 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQR-------QG-LSMNSVRFLFDGQRIRDNQTPDDLGMEDGD--EIEVM 81 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHH-------hC-CCccceEEEECCeECCCCCCHHHcCCCCCC--EEEEE
Confidence 678999999999999999999999999999996 45 899999999999999999999999999776 68887
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 82 l~l 84 (87)
T cd01763 82 LEQ 84 (87)
T ss_pred Eec
Confidence 764
No 31
>KOG0010|consensus
Probab=99.66 E-value=1.7e-16 Score=123.63 Aligned_cols=73 Identities=25% Similarity=0.339 Sum_probs=66.3
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|++|+.++ ++++.|..+.||.+||+.|+..+ .+++++++|||+||+|+|++||..|||++| +|||||
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f--------~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg--~TvHLV 84 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRF--------GAPPDQLVLIYAGRILKDDDTLKQYGIQDG--HTVHLV 84 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhc--------CCChhHeeeeecCccccChhhHHHcCCCCC--cEEEEE
Confidence 5789999998 99999999999999999999974 278999999999999999999999999966 489999
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
++..
T Consensus 85 ik~~ 88 (493)
T KOG0010|consen 85 IKSQ 88 (493)
T ss_pred eccC
Confidence 8753
No 32
>KOG0011|consensus
Probab=99.65 E-value=4.6e-16 Score=116.47 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=69.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
..|+||++.|++|++++.|++||.++|.+|+.....+ .+++.|+|||+||+|.|+.|+.+|+++++++++|+|.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~d------yP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMls 74 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPD------YPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLS 74 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCC------CchhhheeeecceeccCCcchhhhccccCceEEEEEe
Confidence 3699999999999999999999999999999974333 6899999999999999999999999999999888876
Q ss_pred ec
Q psy5872 81 PR 82 (91)
Q Consensus 81 ~~ 82 (91)
..
T Consensus 75 K~ 76 (340)
T KOG0011|consen 75 KD 76 (340)
T ss_pred cC
Confidence 55
No 33
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.64 E-value=1.2e-15 Score=87.99 Aligned_cols=63 Identities=22% Similarity=0.394 Sum_probs=57.6
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCC
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCS 72 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~ 72 (91)
+.|.+|+.+ .++.+++++++||++||++|++. .+ ++++.|||+|.|+.|+|+.||++||+++|
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~-------~~-~~~~~~~L~~~g~~L~d~~tL~~~~i~~~ 63 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAEL-------TG-IPVEQQRLIYKGKVLEDDRTLADYNIQDG 63 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHH-------HC-CCHHHEEEEECCEECCCCCCHHHcCCcCC
Confidence 478899998 79999999999999999999996 33 88999999999999999999999999865
No 34
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.58 E-value=7.1e-15 Score=89.66 Aligned_cols=62 Identities=18% Similarity=0.159 Sum_probs=53.8
Q ss_pred cCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecC-CCCcccccCCC-CCCcEEEEEE
Q psy5872 8 VSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLH-SNVTLGALGLT-CSKTTVMHLV 80 (91)
Q Consensus 8 ~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~-D~~tL~~~~i~-~~~~~tvhlv 80 (91)
-.|.++.+++++++||++||++|++. +| +|+++||| |.|+.|. |+.||++||++ +|+ ++||-
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~-------~g-ip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~--~~~l~ 73 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLD-------YG-FPPAVQRW-VIGQRLARDQETLYSHGIRTNGD--SAFLY 73 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHH-------HC-cCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCC--EEEEE
Confidence 35689999999999999999999995 55 99999999 9999994 77999999998 555 67764
No 35
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.52 E-value=8.2e-14 Score=81.13 Aligned_cols=66 Identities=29% Similarity=0.498 Sum_probs=58.5
Q ss_pred EEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 5 LILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 5 ~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++..+|+.+.+++++++||++||++|++.+ + ++++.|+|+|.|+.|+|+.+|++|++.++. ++|+.
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~-------~-~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~--~i~v~ 67 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKE-------G-VPPEQQRLIYAGKILKDDKTLSDYGIQDGS--TLHLV 67 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHH-------C-cChHHEEEEECCcCCCCcCCHHHCCCCCCC--EEEEE
Confidence 567789999999999999999999999963 3 889999999999999999999999999765 46654
No 36
>KOG4248|consensus
Probab=99.46 E-value=1.2e-13 Score=114.73 Aligned_cols=72 Identities=25% Similarity=0.430 Sum_probs=66.8
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
+||++||++.++.+|.++..+||.++|.+|++. .+|+.+.|||||+||+|.|++++.+||| +|. +||||
T Consensus 3 ~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~--------~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk--~~hlv 71 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRAS--------VNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGK--VIHLV 71 (1143)
T ss_pred cceeeeecccceeEEEechHHHHHHHHHHHHHh--------cccccccceeeecceeeccchhhhhccC-CCe--EEEee
Confidence 579999999999999999999999999999994 5699999999999999999999999999 465 79998
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
-|+
T Consensus 72 erp 74 (1143)
T KOG4248|consen 72 ERP 74 (1143)
T ss_pred ccC
Confidence 884
No 37
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.39 E-value=1.2e-12 Score=77.97 Aligned_cols=71 Identities=20% Similarity=0.413 Sum_probs=61.7
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCC-CcEEEEEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKA-DILRLIYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~-~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
|+|+++..+|+.+.+.+.++++++.|++++++. .+ +++ +.++|+|.|+.|+++.|++++|+.+|+ ++|+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~-------~~-i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d--~Idv 70 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEK-------KG-IPPEESIRLIFDGKRLDPNDTPEDLGIEDGD--TIDV 70 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHH-------HT-TTT-TTEEEEETTEEE-TTSCHHHHT-STTE--EEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHh-------hC-CCccceEEEEECCEEcCCCCCHHHCCCCCCC--EEEE
Confidence 689999999999999999999999999999995 33 788 999999999999999999999999776 6787
Q ss_pred Ee
Q psy5872 80 VP 81 (91)
Q Consensus 80 v~ 81 (91)
++
T Consensus 71 ~I 72 (72)
T PF11976_consen 71 II 72 (72)
T ss_dssp E-
T ss_pred EC
Confidence 53
No 38
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.39 E-value=1.2e-12 Score=83.94 Aligned_cols=63 Identities=22% Similarity=0.343 Sum_probs=54.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeec-CCCCcccccCCCCCCcEEEEEEecCC
Q psy5872 12 TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFL-HSNVTLGALGLTCSKTTVMHLVPREN 84 (91)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L-~D~~tL~~~~i~~~~~~tvhlv~~~~ 84 (91)
-.+++|++++||++||.+|.+.+ + .++.+|+|+|.|+.| +|+.||++|||.+++ +++|.+..+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f-------~-V~P~dQkL~~dG~~L~DDsrTLssyGv~sgS--vl~LlideP 79 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAF-------S-VAPFDQNLSIDGKILSDDCATLGTLGVIPES--VILLKADEP 79 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHh-------c-CCcccceeeecCceeccCCccHHhcCCCCCC--EEEEEecCC
Confidence 45688999999999999999963 3 899999999999999 568999999998775 788888654
No 39
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.25 E-value=6.1e-11 Score=73.45 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=54.8
Q ss_pred EEEEEecC-CCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEE-EEcCe-----ec-CCCCcccccCCCCCC
Q psy5872 2 NLRLILVS-GKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRL-IYQGR-----FL-HSNVTLGALGLTCSK 73 (91)
Q Consensus 2 ~l~~~~~~-g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrL-I~~Gk-----~L-~D~~tL~~~~i~~~~ 73 (91)
+|.|..-. ....+..+++++||.+||++++.. -| ++++.||| +|.|+ .| +|+.+|++||+++|.
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~-------~G-~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~ 74 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELV-------VG-TPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGC 74 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHH-------HC-CCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCC
Confidence 45554432 344555699999999999999985 33 89999999 58999 46 789999999999776
Q ss_pred cEEEEEEe
Q psy5872 74 TTVMHLVP 81 (91)
Q Consensus 74 ~~tvhlv~ 81 (91)
+||++=
T Consensus 75 --~IhVvD 80 (84)
T cd01789 75 --RIHVID 80 (84)
T ss_pred --EEEEEe
Confidence 689863
No 40
>KOG0001|consensus
Probab=99.16 E-value=5.3e-10 Score=64.27 Aligned_cols=71 Identities=28% Similarity=0.376 Sum_probs=62.2
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEec
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVPR 82 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~~ 82 (91)
+.+++..|++..+++.++.+|..+|.+|+.. ++ ++.+.|++.|.|+.|+|+.+|.+|+|..+. ++|++.+
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~-------~~-~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~--~~~l~~~ 71 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDK-------EG-IPVDQQRLIFGGKPLEDGRTLADYNIQEGS--TLHLVLS 71 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhh-------cC-CCCeeEEEEECCEECcCCCcHHHhCCCCCC--EEEEEEe
Confidence 4566789999999999999999999999995 44 899999999999999999999999998554 7888766
Q ss_pred C
Q psy5872 83 E 83 (91)
Q Consensus 83 ~ 83 (91)
.
T Consensus 72 ~ 72 (75)
T KOG0001|consen 72 L 72 (75)
T ss_pred c
Confidence 4
No 41
>PLN02560 enoyl-CoA reductase
Probab=99.05 E-value=8.9e-10 Score=82.51 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=57.5
Q ss_pred CEEEEEecCCCEE---EEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEc---C----eecCCCCcccccCCC
Q psy5872 1 INLRLILVSGKTK---EFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQ---G----RFLHSNVTLGALGLT 70 (91)
Q Consensus 1 i~l~~~~~~g~~~---~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~---G----k~L~D~~tL~~~~i~ 70 (91)
++|+++..+|+.+ ++++++++||++||++|++. .+..++++|||++. | +.|+|++||+++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~-------~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~ 73 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKR-------KKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLG 73 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHH-------cCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCC
Confidence 4688888889876 79999999999999999996 23247899999983 4 489999999999998
Q ss_pred CCCcEEEEE
Q psy5872 71 CSKTTVMHL 79 (91)
Q Consensus 71 ~~~~~tvhl 79 (91)
+|+ ++|+
T Consensus 74 ~gs--tLy~ 80 (308)
T PLN02560 74 DGG--TVVF 80 (308)
T ss_pred CCc--eEEE
Confidence 665 5553
No 42
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.99 E-value=2.6e-09 Score=66.11 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=53.8
Q ss_pred CEEEEEecCC--CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEc--------CeecCCCCcccccCCC
Q psy5872 1 INLRLILVSG--KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQ--------GRFLHSNVTLGALGLT 70 (91)
Q Consensus 1 i~l~~~~~~g--~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~--------Gk~L~D~~tL~~~~i~ 70 (91)
|+|.|..... ...+..+++++||++||++|+..+ | ++++.|||.+. -...+|+.+|.+||++
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~-------G-i~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~ 73 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLT-------G-IPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIK 73 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHH-------T-S-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-S
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHh-------C-CCcccEEEEEEecCCCccccccCCCccEeecCCCC
Confidence 4566655544 489999999999999999999963 3 99999999887 2233679999999999
Q ss_pred CCCcEEEEEE
Q psy5872 71 CSKTTVMHLV 80 (91)
Q Consensus 71 ~~~~~tvhlv 80 (91)
+|. ++|++
T Consensus 74 dg~--~i~V~ 81 (87)
T PF14560_consen 74 DGM--RIHVV 81 (87)
T ss_dssp TTE--EEEEE
T ss_pred CCC--EEEEE
Confidence 774 67764
No 43
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.96 E-value=2.4e-09 Score=64.97 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=43.7
Q ss_pred CCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEE--EEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 18 SPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRL--IYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 18 ~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrL--I~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
+++.||++||..|++.+ +..+++.||| ++.|+.|.|++||++||+.+|. ++|+
T Consensus 20 ~~~aTV~dlk~~i~~~~-------~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~--~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSS-------PQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGA--TLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHc-------CCCCcceeEEEeCCCCcccCCcccHhhcCCCCCC--EEEE
Confidence 58899999999999863 1256888888 6999999999999999998665 5664
No 44
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=98.95 E-value=5.2e-09 Score=66.80 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=48.7
Q ss_pred EEEEecCC-CEEEEEeC--CCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccC
Q psy5872 3 LRLILVSG-KTKEFLFS--PSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68 (91)
Q Consensus 3 l~~~~~~g-~~~~~~v~--~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~ 68 (91)
|+||..++ .-.++++. .++||..||..|.+..|++ .+...+||||+||+|.|...|+..-
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~------~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPE------PSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCC------CccccEEeeecCcccCccchhhhhh
Confidence 56666665 34667777 7899999999999998766 6789999999999999988876543
No 45
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.76 E-value=3.4e-08 Score=64.78 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=51.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCC-----CCcEEEEEEec
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTC-----SKTTVMHLVPR 82 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~-----~~~~tvhlv~~ 82 (91)
.++=+++.+++||.+||++|+.-. ..|+++|||+-.+.+|+|++||++||+.. ....+|-|.+|
T Consensus 12 TTiF~dakes~tVlelK~~iegI~--------k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 12 TTIFTDAKESTTVYELKRIVEGIL--------KRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred eEEEeecCCcccHHHHHHHHHHHh--------cCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 455578999999999999999841 16899999997788899999999999932 23456777777
No 46
>KOG0006|consensus
Probab=98.76 E-value=1.3e-08 Score=77.00 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=55.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE-ecC
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV-PRE 83 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv-~~~ 83 (91)
..++++|+.+++|.+||+.++.+ .| ++++++|+||+||.|.|+.|++.|.+. ..+++|++ +||
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~-------~g-vp~D~L~viFaGKeLs~~ttv~~cDL~--qqs~~hi~~lRP 77 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKR-------QG-VPADQLRVIFAGKELSNDTTVQNCDLS--QQSATHIMLLRP 77 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHh-------hC-CChhheEEEEeccccccCceeeccccc--ccchhhhhccCc
Confidence 68899999999999999999996 44 999999999999999999999988884 55678887 565
No 47
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.71 E-value=1.3e-07 Score=51.26 Aligned_cols=65 Identities=26% Similarity=0.406 Sum_probs=55.6
Q ss_pred EecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 6 ILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 6 ~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
+..+|....+.+.+++|+++||.+|.+.+ + .+++.++|.+.|+.+++...+.++++.++. ++++.
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~-------~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~i~~~ 67 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKL-------G-LPPEQQRLLVNGKILPDSLTLEDYGLQDGD--ELVLV 67 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHH-------C-cChHHeEEEECCeECCCCCcHHHcCCCCCC--EEEEE
Confidence 44478899999999999999999999974 2 688999999999999999988899998666 46654
No 48
>KOG4583|consensus
Probab=98.67 E-value=9.2e-10 Score=83.29 Aligned_cols=80 Identities=21% Similarity=0.192 Sum_probs=65.6
Q ss_pred EEEEEecCCC--EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 2 NLRLILVSGK--TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 2 ~l~~~~~~g~--~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
.|-+|..+.+ -.++..+..+||++||.+++..+|++ .-..+|||||+||.|.|..-|.|.=++..+.+++||
T Consensus 11 ~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPsk------pl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hl 84 (391)
T KOG4583|consen 11 TLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSK------PLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHL 84 (391)
T ss_pred EEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCC------CchhhHHHHhhccccccchhHHHHHHHHHHHHHHHH
Confidence 4556666663 45566778999999999999999966 567999999999999999999998877677889999
Q ss_pred EecCCCCC
Q psy5872 80 VPRENLPE 87 (91)
Q Consensus 80 v~~~~~p~ 87 (91)
|+..+.|.
T Consensus 85 vcnsk~v~ 92 (391)
T KOG4583|consen 85 VCNSKEVV 92 (391)
T ss_pred hcCCCCCC
Confidence 99876553
No 49
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=98.38 E-value=4.9e-06 Score=51.03 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=51.2
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE--EcCeec-CCCCcccccCCC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI--YQGRFL-HSNVTLGALGLT 70 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI--~~Gk~L-~D~~tL~~~~i~ 70 (91)
.|.||+.+|+++...|..++||++|.+.|....|+. ......|. |=.|.| +++.||+|+|+.
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~-------~~~~f~L~t~fP~k~l~~~~~Tl~eagL~ 70 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEF-------AARPFTLMTAFPVKELSDESLTLKEANLL 70 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCC-------CCCCEEEecCCCCcccCCCCCcHHHCCCc
Confidence 689999999999999999999999999999864321 23556665 668888 458999999998
No 50
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.27 E-value=9.7e-06 Score=49.71 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=51.7
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC-----eecCCCCcccccCCC
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG-----RFLHSNVTLGALGLT 70 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G-----k~L~D~~tL~~~~i~ 70 (91)
|.++++-..+.-..+.|+|..+|..+|++|...|. + ...|||-|+- ..|.+.+||++|||=
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~--------~-~g~qrLsfQepgg~rqlL~s~~sLA~yGiF 66 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRN--------C-SGLQRLSFQEPGGERQLLSSRKSLADYGIF 66 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhC--------c-ccceEEEeecCCcccccccccccHhhhcce
Confidence 57788877888899999999999999999999762 3 4699999963 356899999999995
No 51
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.26 E-value=2.4e-06 Score=52.65 Aligned_cols=67 Identities=22% Similarity=0.290 Sum_probs=38.5
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEc---Ceec--CCCCcccccCCCCCCcEE
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQ---GRFL--HSNVTLGALGLTCSKTTV 76 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~---Gk~L--~D~~tL~~~~i~~~~~~t 76 (91)
-|+||..+|-.. +++++++|+++|+++|++..+ ++.+.+.|... ...| .++.||+++||+.|+ .
T Consensus 6 ilRvrS~dG~~R-ie~~~~~t~~~L~~kI~~~l~--------~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGd--m 74 (80)
T PF11543_consen 6 ILRVRSKDGMKR-IEVSPSSTLSDLKEKISEQLS--------IPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGD--M 74 (80)
T ss_dssp EEEEE-SSEEEE-EEE-TTSBHHHHHHHHHHHS-----------TTT---BSSGGGGGCSSS-TT-CCCCT---TT---E
T ss_pred EEEEECCCCCEE-EEcCCcccHHHHHHHHHHHcC--------CCCcceEEEecCCCCcccccCCcCCHHHcCCCCcc--E
Confidence 478999998433 678999999999999999642 55566665221 1234 468999999999887 4
Q ss_pred EEE
Q psy5872 77 MHL 79 (91)
Q Consensus 77 vhl 79 (91)
++|
T Consensus 75 lyL 77 (80)
T PF11543_consen 75 LYL 77 (80)
T ss_dssp EE-
T ss_pred EEE
Confidence 554
No 52
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=98.18 E-value=1.8e-05 Score=47.89 Aligned_cols=69 Identities=23% Similarity=0.298 Sum_probs=53.3
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCC-cEEEE--EcCeecCC-C-CcccccCCCCCCcE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKAD-ILRLI--YQGRFLHS-N-VTLGALGLTCSKTT 75 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~-~qrLI--~~Gk~L~D-~-~tL~~~~i~~~~~~ 75 (91)
+.|+||+.+|.++...|.+++||.+|...|.... . .+.. ..+|+ |--+.|.+ + .||+++|+.++.
T Consensus 7 ~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~-------~-~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~-- 76 (82)
T PF00789_consen 7 VRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQL-------F-SPEESDFELITAFPRRELTDEDSKTLEEAGLLPSA-- 76 (82)
T ss_dssp EEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHH-------H-CTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCE--
T ss_pred EEEEEECCCCCEEEEEECCcchHHHHHHHHHHhc-------C-CCCCccEEEEeCCCCcCCCccccccHHHhcCCCCe--
Confidence 3689999999999999999999999999999852 1 2223 26775 56788854 3 799999998554
Q ss_pred EEEE
Q psy5872 76 VMHL 79 (91)
Q Consensus 76 tvhl 79 (91)
+|++
T Consensus 77 ~l~v 80 (82)
T PF00789_consen 77 TLIV 80 (82)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5654
No 53
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.93 E-value=0.00012 Score=44.01 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=49.3
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE--EcCeecC---CCCcccccCCCC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI--YQGRFLH---SNVTLGALGLTC 71 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI--~~Gk~L~---D~~tL~~~~i~~ 71 (91)
+|.||+.+|.++...+..++||++|.+.|.... ......+|+ |-.|.+. ++.||+++|+.+
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~---------~~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~ 69 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNG---------PPAEPFTLMTSFPRRVLTDLDYELTLQEAGLVN 69 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcC---------CCCCCEEEEeCCCCccCCCCCccCcHHHcCCcc
Confidence 689999999999999999999999999999852 123455665 4467774 489999999973
No 54
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.93 E-value=0.00013 Score=45.31 Aligned_cols=64 Identities=22% Similarity=0.236 Sum_probs=53.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC--eecC--------CCCcccccCCC
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG--RFLH--------SNVTLGALGLT 70 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G--k~L~--------D~~tL~~~~i~ 70 (91)
+.|.||+.+|..+.-.|..++||++|...|... + ..++...|+++= |.+. .+.||++.|+.
T Consensus 5 ~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~--------~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~ 75 (85)
T cd01774 5 VKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-K--------ETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLS 75 (85)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-C--------CCCCcEEEecCCCCccccccccccCcCCCCHHHcCCC
Confidence 478999999999999999999999999999753 1 345778888877 7885 36899999998
Q ss_pred CCC
Q psy5872 71 CSK 73 (91)
Q Consensus 71 ~~~ 73 (91)
+..
T Consensus 76 ~s~ 78 (85)
T cd01774 76 NSE 78 (85)
T ss_pred Ccc
Confidence 544
No 55
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.77 E-value=0.00023 Score=43.18 Aligned_cols=64 Identities=23% Similarity=0.219 Sum_probs=49.6
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE--EcCeecCC---CCcccccCCCCCC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI--YQGRFLHS---NVTLGALGLTCSK 73 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI--~~Gk~L~D---~~tL~~~~i~~~~ 73 (91)
.|.||+.+|.++...+.+++||++|.+.|.... + ......+|+ |-.|.|.+ +.||.++|+-++.
T Consensus 6 ~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~-------~-~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~ 74 (80)
T smart00166 6 RLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAAL-------T-DGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSS 74 (80)
T ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcc-------c-CCCCCEEEEeCCCCcCCccccccCCHHHCCCCCce
Confidence 689999999999999999999999999996542 1 233445664 55677753 5799999987554
No 56
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.71 E-value=9.2e-05 Score=44.95 Aligned_cols=72 Identities=11% Similarity=0.129 Sum_probs=47.5
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE-EcCeecCCCCcccccCCCCCCc
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI-YQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI-~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
++|+|..-.|+.+.+.++.+.+|++|...|.+..... ..........+|. -.|+.|+++.||+++||.+|+.
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~--~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~ 75 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLP--GDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDV 75 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS-----S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-E
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc--cCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCE
Confidence 4677766567999999999999999999999964321 0110111246776 7899999999999999998873
No 57
>KOG4495|consensus
Probab=97.68 E-value=7.4e-05 Score=47.95 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=42.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC--eecCCCCcccccCCC
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG--RFLHSNVTLGALGLT 70 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G--k~L~D~~tL~~~~i~ 70 (91)
.++=++.+++.||-+||.+++.-. .-|++.|||.... .+|+|.+||++||..
T Consensus 12 ttif~da~es~tV~elK~~l~gi~--------~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 12 TTIFTDAKESSTVFELKRKLEGIL--------KRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeEEeecCccccHHHHHHHHHHHH--------hCCCcchheeecCHHHHhhccchhhhcccc
Confidence 455578999999999999999842 1589999997733 577999999999874
No 58
>KOG1769|consensus
Probab=97.67 E-value=0.00082 Score=43.09 Aligned_cols=71 Identities=14% Similarity=0.218 Sum_probs=60.1
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
|+|+++-=+|..+.+.+.-++...-|+....++ .| .+.+.+|++|.|+-+.+..|-++++..+|+.+-++.
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r-------~G-l~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCER-------QG-LSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHH-------cC-CccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence 466666645678889999999999999999996 44 889999999999999999999999999888654443
No 59
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.65 E-value=0.0004 Score=42.28 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=49.7
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE--EcCeecCC---CCcccccCCCCCC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI--YQGRFLHS---NVTLGALGLTCSK 73 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI--~~Gk~L~D---~~tL~~~~i~~~~ 73 (91)
.|.||+.+|.++...++.++|+++|.+.|....+ ......|+ |--|.+.+ +.||+++|+.+..
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~---------~~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa 73 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTG---------NGGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSA 73 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCC---------CCCCEEEEeCCCCeECCcccccCCHHHCCCCCce
Confidence 6899999999999999999999999999998532 12344554 55677743 5899999998554
No 60
>KOG1872|consensus
Probab=97.51 E-value=0.00024 Score=56.00 Aligned_cols=63 Identities=14% Similarity=0.301 Sum_probs=55.0
Q ss_pred cCCCEEEEE-eCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 8 VSGKTKEFL-FSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 8 ~~g~~~~~~-v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
-.|+.++++ ++.++|+..+|.+++.. .| .+|+.||+.+.|+.+.|+--+...+|++|. ++|++
T Consensus 10 W~gk~y~v~~l~~d~t~~vlKaqlf~L-------Tg-V~PeRQKv~vKGg~a~dd~~~~al~iKpn~--~lmMm 73 (473)
T KOG1872|consen 10 WGGKKYPVETLSTDETPSVLKAQLFAL-------TG-VPPERQKVMVKGGLAKDDVDWGALQIKPNE--TLMMM 73 (473)
T ss_pred ecCccccceeccCCCchHHHHHHHHHh-------cC-CCccceeEEEecccccccccccccccCCCC--EEEee
Confidence 467888888 99999999999999996 44 899999999999999999888999999886 45553
No 61
>KOG3493|consensus
Probab=97.46 E-value=5.5e-05 Score=45.30 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=51.4
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
+.+-.--|+.+.+.+.+++||+++|..|+.+ .| ..++.+.|=--+-+++|.-+|++|.|.+|..
T Consensus 4 v~~nDrLGKKVRvKCn~dDtiGD~KKliaaQ-------tG-T~~~kivl~k~~~i~kd~I~L~dyeihdg~~ 67 (73)
T KOG3493|consen 4 VVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQ-------TG-TRPEKIVLKKWYTIFKDHITLSDYEIHDGMN 67 (73)
T ss_pred ehhhhhcCceEEEEeCCcccccCHHHHHHHh-------hC-CChhHhHHHhhhhhhhcccceeeEEeccCcc
Confidence 3333446899999999999999999999995 33 6667777766677889999999999987743
No 62
>KOG0013|consensus
Probab=97.38 E-value=0.00031 Score=50.59 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=52.2
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEE
Q psy5872 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVM 77 (91)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tv 77 (91)
++.-+-+.+...+||+++|..+... ++ ..+-.|+..|+|++|-|..-|.+|+|..|...++
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aa-------eg-~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAA-------EG-VDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHh-------hc-cchhhheeeccCCceeccccceeeeecCCCEEEE
Confidence 5677778888899999999999995 45 6688999999999999999999999998853333
No 63
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.29 E-value=0.0032 Score=38.59 Aligned_cols=64 Identities=25% Similarity=0.189 Sum_probs=50.9
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE--EcCeecC--C-CCcccccCCCCCC
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI--YQGRFLH--S-NVTLGALGLTCSK 73 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI--~~Gk~L~--D-~~tL~~~~i~~~~ 73 (91)
++|.||+.+|....-.+..++|+++|-..|... + .+...-+|+ |==|.+. | +.||+++|+.+..
T Consensus 5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~--------~-~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~ 73 (80)
T cd01771 5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK--------G-YPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQE 73 (80)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc--------C-CCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCc
Confidence 478999999999999999999999999999873 2 344566664 4556663 3 6799999998665
No 64
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.18 E-value=0.0062 Score=37.77 Aligned_cols=64 Identities=22% Similarity=0.308 Sum_probs=49.9
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE--EcCeec---CCCCcccccCCCCCCc
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI--YQGRFL---HSNVTLGALGLTCSKT 74 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI--~~Gk~L---~D~~tL~~~~i~~~~~ 74 (91)
.|.||+++|++..-.+..++|+.+|-..+... + .+++..+|+ |==|.+ +-+.||+++|+.+.+.
T Consensus 7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~--------g-~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~ 75 (82)
T cd01773 7 RLMLRYPDGKREQIALPEQAKLLALVRHVQSK--------G-YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQET 75 (82)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc--------C-CCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcE
Confidence 58899999999999999999999999999983 1 345666664 334455 3368999999986653
No 65
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.18 E-value=0.0045 Score=42.90 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=52.4
Q ss_pred CEEEEEecCC----CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCc-EEEEE-cCeec--CCCCcccccCCCCC
Q psy5872 1 INLRLILVSG----KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADI-LRLIY-QGRFL--HSNVTLGALGLTCS 72 (91)
Q Consensus 1 i~l~~~~~~g----~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~-qrLI~-~Gk~L--~D~~tL~~~~i~~~ 72 (91)
|+|-+.+++| .++.+.+++++||.+|+.+|.+..| ++... +.|.+ .++.| .++..+.++.-...
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~--------~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~ 72 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLP--------IPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQ 72 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcC--------CCccceeEEEEeCCCeeCCCccccHHhhccCcC
Confidence 6889999999 6999999999999999999999743 44444 44544 34455 45566666543322
Q ss_pred --CcEEEEEEec
Q psy5872 73 --KTTVMHLVPR 82 (91)
Q Consensus 73 --~~~tvhlv~~ 82 (91)
+..+++|+++
T Consensus 73 ~~~~~~l~l~~r 84 (162)
T PF13019_consen 73 DSDFITLRLSLR 84 (162)
T ss_pred CCCceEEEEEEe
Confidence 4667777765
No 66
>COG5417 Uncharacterized small protein [Function unknown]
Probab=97.00 E-value=0.0071 Score=37.17 Aligned_cols=71 Identities=7% Similarity=0.109 Sum_probs=56.6
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
|.+-|+-..|.++.+.++.-.+|+.|-..+++...-++ ...+-..+|..-.+++|.+++-|.+|+|.+|+.
T Consensus 7 VTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~---~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~ 77 (81)
T COG5417 7 VTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISI---FDREGTQIKVMNKAQLLSGDDKLIDYQIADGDI 77 (81)
T ss_pred EEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccc---cccCCCEEEEeccceEecCCceEEeccccCCCE
Confidence 35667788999999999999999999888888521111 012347899999999999999999999999984
No 67
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.014 Score=37.22 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=55.5
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
|+|++.--+|..+-+.+..+++...|-...+.+. | -..+.+|++|.|+-++-++|-++++...++.
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rq-------G-K~m~slRfL~dG~rI~~dqTP~dldmEdnd~ 90 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQ-------G-KNMSSLRFLFDGKRIDLDQTPGDLDMEDNDE 90 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHh-------C-cCcceeEEEEcceecCCCCChhhcCCccchH
Confidence 5666666677888899999999999988888862 3 5679999999999999999999999986664
No 68
>KOG2086|consensus
Probab=96.50 E-value=0.0068 Score=46.93 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=50.5
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEE--EEcCeec-CCCCcccccCCC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRL--IYQGRFL-HSNVTLGALGLT 70 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrL--I~~Gk~L-~D~~tL~~~~i~ 70 (91)
+|.||+.+|......|+.+.||.+++..|...=|.+ +...+-| -|=-|.| +|+.||++.|+.
T Consensus 307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~-------~~~~F~L~~~FPpk~l~D~sqTle~AgL~ 371 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGD-------SSTYFILMMAFPPKPLSDDSQTLEEAGLL 371 (380)
T ss_pred eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCC-------cCCceeeeecCCCcccCCcchhHHhccch
Confidence 689999999999999999999999999999975433 3334444 4556888 558999999997
No 69
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=96.40 E-value=0.043 Score=32.51 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=53.6
Q ss_pred EEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEE----c--CeecCCCCcccccCCCCCCcEEEE
Q psy5872 5 LILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIY----Q--GRFLHSNVTLGALGLTCSKTTVMH 78 (91)
Q Consensus 5 ~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~----~--Gk~L~D~~tL~~~~i~~~~~~tvh 78 (91)
+++++|...++++++++|+++|=+.|.+. -+-...+..=|.| . ...|+.+++|.+.....+...++|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~-------l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~ 73 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDK-------LGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLY 73 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHH-------HTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHH-------cCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEE
Confidence 46799999999999999999999999996 2223556677777 2 356788999999887655666777
Q ss_pred EEec
Q psy5872 79 LVPR 82 (91)
Q Consensus 79 lv~~ 82 (91)
+-++
T Consensus 74 frvk 77 (80)
T PF09379_consen 74 FRVK 77 (80)
T ss_dssp EEES
T ss_pred EEEE
Confidence 6543
No 70
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=96.29 E-value=0.013 Score=35.57 Aligned_cols=59 Identities=27% Similarity=0.402 Sum_probs=46.5
Q ss_pred eCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCccccc-CCCCCCcEEEEEEecCC
Q psy5872 17 FSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGAL-GLTCSKTTVMHLVPREN 84 (91)
Q Consensus 17 v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~-~i~~~~~~tvhlv~~~~ 84 (91)
|.++++|.+|++.+... |+ . ..-....|.|.|+.|+|...|++. |+++| .+++++..+.
T Consensus 1 v~~~d~v~dvrq~L~~~-~~-----t-~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~--~~L~lve~pY 60 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAES-PE-----T-CYLTNFSLEHNGQRLDDFVELSEIEGIKDG--CVLELVEEPY 60 (76)
T ss_pred CChhhHHHHHHHHHHhC-cc-----c-cceeEEEEEECCCccCCchhhhhhhCCCCC--cEEEEEecCC
Confidence 46789999999999996 21 1 456788999999999998888887 57754 4788876654
No 71
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.02 E-value=0.13 Score=30.42 Aligned_cols=60 Identities=8% Similarity=0.111 Sum_probs=40.2
Q ss_pred EecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCC
Q psy5872 6 ILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSK 73 (91)
Q Consensus 6 ~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~ 73 (91)
...+++++.+.+.|++++.++=+..-+.+ + ++++.-.|.|.+|.|+-+.++.=.|+..|.
T Consensus 2 i~~~~rr~~vkvtp~~~l~~VL~eac~k~-------~-l~~~~~~L~h~~k~ldlslp~R~snL~n~a 61 (65)
T PF11470_consen 2 ICYNFRRFKVKVTPNTTLNQVLEEACKKF-------G-LDPSSYDLKHNNKPLDLSLPFRLSNLPNNA 61 (65)
T ss_dssp E-TTS-EEEE---TTSBHHHHHHHHHHHT-------T---GGG-EEEETTEEESSS-BHHHH---SS-
T ss_pred CccCCcEEEEEECCCCCHHHHHHHHHHHc-------C-CCccceEEEECCEEeccccceeecCCCCCC
Confidence 35678999999999999999888777753 3 778899999999999989999999998775
No 72
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=94.95 E-value=0.15 Score=33.94 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=41.8
Q ss_pred EEEEE-eCC-CCcHHHHHHHHhhcCCCC--CcccccCCCCcEEEEEcC-----------------eec---CCCCccccc
Q psy5872 12 TKEFL-FSP-SDSAGDIAQHVFDNWPED--WSDEAVAKADILRLIYQG-----------------RFL---HSNVTLGAL 67 (91)
Q Consensus 12 ~~~~~-v~~-~~TV~~lK~~I~~~~p~~--~~~~~~~~~~~qrLI~~G-----------------k~L---~D~~tL~~~ 67 (91)
.+.+. ++. ++||++|++.+.+..+.. |.--.+...+.+|+++.. -+| +|+.||.++
T Consensus 16 ~~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~ 95 (122)
T PF10209_consen 16 NLVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKEL 95 (122)
T ss_pred eeeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHc
Confidence 33443 887 999999999999864433 100112345778887754 466 788999999
Q ss_pred CCCCCC
Q psy5872 68 GLTCSK 73 (91)
Q Consensus 68 ~i~~~~ 73 (91)
||..+.
T Consensus 96 gv~nET 101 (122)
T PF10209_consen 96 GVENET 101 (122)
T ss_pred CCCccc
Confidence 998443
No 73
>KOG3206|consensus
Probab=94.20 E-value=0.17 Score=36.63 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=45.2
Q ss_pred EEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEE-EEcC-----eec-CCCCcccccCCCCCCcEEEEEE
Q psy5872 13 KEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRL-IYQG-----RFL-HSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrL-I~~G-----k~L-~D~~tL~~~~i~~~~~~tvhlv 80 (91)
.+-.+.++.||+++|.+++-. .| .+++.++| +|.| -.| +++..|..|+..+| ..||++
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~-------~G-~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg--~rihvi 79 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELL-------TG-TEAESMELELYDGDDKKVSALSNEDADLGFYKVEDG--LRIHVI 79 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhh-------hC-CCccceEEEEEcCCCceeeeccCCcccccccCCCCc--eEEEEE
Confidence 445688999999999999996 33 78899988 6776 356 45788999999755 478874
No 74
>KOG1639|consensus
Probab=93.09 E-value=0.24 Score=36.89 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=38.8
Q ss_pred EEeCCCCcHHHHHHHHhhcCCCCCcccccCCC----CcEEEEEcCeecCCCCcccccCCCCCC
Q psy5872 15 FLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKA----DILRLIYQGRFLHSNVTLGALGLTCSK 73 (91)
Q Consensus 15 ~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~----~~qrLI~~Gk~L~D~~tL~~~~i~~~~ 73 (91)
.+...+.||+|+++.|..+ +..+.+ ..+|+--+|+.|-|+.+|++|+..+|.
T Consensus 17 ~~~s~~~ti~d~~~~~~~~-------~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~ 72 (297)
T KOG1639|consen 17 KDLSGSETIDDLLKAISAK-------NLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGA 72 (297)
T ss_pred ecCCCCCcHHHHHHHHHHh-------hhccCccchhheeeccCCCccccchhHHHHhccCCCC
Confidence 5566688999999888875 222433 344555679999999999999998774
No 75
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=92.20 E-value=0.66 Score=28.95 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=30.1
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcC
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNW 34 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~ 34 (91)
.+|+..+|++.-+.+.|++.+.+|++.|+++.
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl 34 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRL 34 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999999999975
No 76
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=90.96 E-value=1.6 Score=25.75 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=35.4
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG 55 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G 55 (91)
.++++. .|.++.+.++++.|-.+|+.+|.+.++ .+....+|-|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~--------~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFG--------LDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhC--------CCCCCeEEEEEC
Confidence 455544 678999999999999999999999854 334677887774
No 77
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=90.84 E-value=0.68 Score=31.32 Aligned_cols=62 Identities=21% Similarity=0.335 Sum_probs=43.7
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccC-CCCcEEEEEc--C----eecCCCCcccccCCC
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVA-KADILRLIYQ--G----RFLHSNVTLGALGLT 70 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~-~~~~qrLI~~--G----k~L~D~~tL~~~~i~ 70 (91)
+.++|.+++|.+..+.+++++||+++-+.+++.. + + ....--|.+. + +.|+...+|.+...+
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~-------~-l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKL-------G-IRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHh-------C-CCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 3678899999999999999999999999999962 2 3 2233344332 1 346556666666553
No 78
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=90.45 E-value=0.59 Score=27.87 Aligned_cols=57 Identities=12% Similarity=0.214 Sum_probs=39.0
Q ss_pred cCCC-EEEEEeCCC-CcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 8 VSGK-TKEFLFSPS-DSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 8 ~~g~-~~~~~v~~~-~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
..|. ...++++.+ .||++|++.+.+.+|+-. -....+.+...|+...++ .-+++|+.
T Consensus 12 ~~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~-----~~~~~~~v~vn~~~v~~~-----~~l~dgDe 70 (80)
T TIGR01682 12 QAGTDEETLELPDESTTVGELKEHLAKEGPELA-----ASRGQVMVAVNEEYVTDD-----ALLNEGDE 70 (80)
T ss_pred HhCCCeEEEECCCCCcCHHHHHHHHHHhCchhh-----hhccceEEEECCEEcCCC-----cCcCCCCE
Confidence 3554 457888876 899999999999876221 112456677788887753 45676764
No 79
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=90.03 E-value=1.1 Score=26.18 Aligned_cols=57 Identities=12% Similarity=0.246 Sum_probs=39.5
Q ss_pred CC-CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 9 SG-KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 9 ~g-~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
.| ....++++.+.||.+|.+.+.+.+|.. .+ .......+...|+...+ +.-+++|+.
T Consensus 13 ~g~~~~~~~~~~~~tv~~ll~~l~~~~~~~---~~-~~~~~~~v~vNg~~v~~-----~~~l~~gD~ 70 (80)
T cd00754 13 AGKDEEELELPEGATVGELLDALEARYPGL---LE-ELLARVRIAVNGEYVRL-----DTPLKDGDE 70 (80)
T ss_pred hCCceEEEECCCCCcHHHHHHHHHHHCchH---HH-hhhhcEEEEECCeEcCC-----CcccCCCCE
Confidence 35 456788888999999999999987641 01 12356677778888863 345677764
No 80
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=89.69 E-value=1.5 Score=27.03 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=32.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCe
Q psy5872 12 TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGR 56 (91)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk 56 (91)
++.+.+.++.+..+|.++|.++. + ++++.++|-|.-.
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kL-------k-l~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKL-------E-LPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-------C-CCchhcEEEeccC
Confidence 89999999999999999999963 2 6789999999754
No 81
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=89.30 E-value=1.4 Score=35.78 Aligned_cols=69 Identities=20% Similarity=0.388 Sum_probs=42.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhc-CCCC-CcccccCCCCcEEEEEc----Ce-ecCCCC-------------cccccCCC
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDN-WPED-WSDEAVAKADILRLIYQ----GR-FLHSNV-------------TLGALGLT 70 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~-~p~~-~~~~~~~~~~~qrLI~~----Gk-~L~D~~-------------tL~~~~i~ 70 (91)
..+++.|-..|||.++|++|-+. |-.. ++ .. +.++++-|-+. |+ +|+|.+ ||+.|+|+
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~~p~S-~r-p~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 279 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKNTPYS-QR-PRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVP 279 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTTS-GG-GS---GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcCCCCC-CC-CCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCC
Confidence 56888888899999999999985 2111 21 11 34577766332 34 566542 58999999
Q ss_pred CCCcEEEEEEecC
Q psy5872 71 CSKTTVMHLVPRE 83 (91)
Q Consensus 71 ~~~~~tvhlv~~~ 83 (91)
+|. +|-|+.+.
T Consensus 280 dga--~vaLv~k~ 290 (539)
T PF08337_consen 280 DGA--TVALVPKQ 290 (539)
T ss_dssp TTE--EEEEEES-
T ss_pred CCc--eEEEeecc
Confidence 665 67776664
No 82
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=89.30 E-value=1.3 Score=25.70 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=42.6
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
.| ...+.+....||++|.+.+.+.+|+- .......+...|+...+ .-.+.-+++|+.
T Consensus 11 ~g-~~~~~~~~~~tv~~ll~~l~~~~p~~------~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~ 67 (77)
T PF02597_consen 11 AG-EEEIEVPEGSTVRDLLEALAERYPEL------ALRDRVAVAVNGEIVPD--DGLDTPLKDGDE 67 (77)
T ss_dssp HT-EEEEEESSTSBHHHHHHHHCHHTGGG------HTTTTEEEEETTEEEGG--GTTTSBEETTEE
T ss_pred hC-CeEEecCCCCcHHHHHHHHHhhcccc------ccCccEEEEECCEEcCC--ccCCcCcCCCCE
Confidence 45 67788999999999999999987533 14578889999999988 233444566664
No 83
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=89.14 E-value=3.3 Score=24.83 Aligned_cols=61 Identities=16% Similarity=0.365 Sum_probs=40.4
Q ss_pred CC-CEEEEEeCCCCcHHHHHHHHhhcCCCCCc----ccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 9 SG-KTKEFLFSPSDSAGDIAQHVFDNWPEDWS----DEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 9 ~g-~~~~~~v~~~~TV~~lK~~I~~~~p~~~~----~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
.| ....++++ ..||++|.+.+.+.+|+-+. .++ .....+.+...|+...++.. .-+++|+.
T Consensus 13 ~g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~-~~~~~~~v~vN~~~v~~~~~---~~l~dgde 78 (88)
T TIGR01687 13 TGKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGL-GLVPNVIILVNGRNVDWGLG---TELKDGDV 78 (88)
T ss_pred hCCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCC-cccccEEEEECCEecCccCC---CCCCCCCE
Confidence 45 45677886 89999999999999875321 111 12234777778888765431 45777774
No 84
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=88.37 E-value=3 Score=25.69 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=26.8
Q ss_pred EEeCC-CCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCee---c-CCCCcccccCCCCCCcE
Q psy5872 15 FLFSP-SDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRF---L-HSNVTLGALGLTCSKTT 75 (91)
Q Consensus 15 ~~v~~-~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~---L-~D~~tL~~~~i~~~~~~ 75 (91)
+.++. .+|+++|-++|-...- .+..+- +.. .-++||..-. = ..+++|+++||..|...
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~L-g~~~P~-v~~-~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L 64 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKL-GMNEPD-VSV-GGTILYDSDEEEYDDNLPKKLSELGIVNGSIL 64 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS---SSEE-EEE-S-EEEE-SSSSSSTTCTTSBGGGGT--TT-EE
T ss_pred EEEechhCcHHHHHHHHHHhcc-CCCCCE-EEe-CCCEEEcCCcchhhhcccCChhHcCCCCCCEE
Confidence 44454 6799999998877410 010000 111 3344444432 1 12578999999977643
No 85
>PRK06437 hypothetical protein; Provisional
Probab=87.85 E-value=3.3 Score=24.16 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=39.0
Q ss_pred EEEecCC-CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 4 RLILVSG-KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 4 ~~~~~~g-~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
.+.+++| +..+++++.+.||.+|=+.+- ++++..-+...|+++..+ +-+++|+.
T Consensus 3 ~~~~v~g~~~~~~~i~~~~tv~dLL~~Lg------------i~~~~vaV~vNg~iv~~~-----~~L~dgD~ 57 (67)
T PRK06437 3 AMIRVKGHINKTIEIDHELTVNDIIKDLG------------LDEEEYVVIVNGSPVLED-----HNVKKEDD 57 (67)
T ss_pred ceEEecCCcceEEEcCCCCcHHHHHHHcC------------CCCccEEEEECCEECCCc-----eEcCCCCE
Confidence 3456667 668889999999998865531 567888889999999743 44566664
No 86
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=87.55 E-value=1.8 Score=27.06 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=43.3
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCC----CCCcccccCCCCcEEEEEcCeecCCCCccccc
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWP----EDWSDEAVAKADILRLIYQGRFLHSNVTLGAL 67 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p----~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~ 67 (91)
-++|-+.+|.+..+.|++.+|++++-+.+++.-. .+|+ -.+..=-++--|.++|.+.|-++
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~-----LvE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWT-----LVEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeE-----EEEecchhhhhhhccchHHHHHH
Confidence 3678888999999999999999999999998511 1121 12223334567888888776554
No 87
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=87.16 E-value=0.18 Score=38.19 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHhhcCCCCC---cccccCCCCcEE-----EEEcCeecCCCCcccccCC
Q psy5872 20 SDSAGDIAQHVFDNWPEDW---SDEAVAKADILR-----LIYQGRFLHSNVTLGALGL 69 (91)
Q Consensus 20 ~~TV~~lK~~I~~~~p~~~---~~~~~~~~~~qr-----LI~~Gk~L~D~~tL~~~~i 69 (91)
++||.++|+.++++.-..+ ++++ ++.+-+| |+|.-|-+.|++||.+..-
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~-vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~ 159 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETR-VPLDKIKNFRCRLLYKKKPVGDSKTLAEVLA 159 (309)
T ss_dssp ----------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhccccccccccc-CCHHHhhhhhhhheecCccCCCcCcHHHHHh
Confidence 6899999999999422111 1233 7788888 9999999999999887653
No 88
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=86.56 E-value=7.1 Score=30.89 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=51.3
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE-EcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI-YQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI-~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++++.... +...+-++.+..|++|--.|.+.-.++-... ..+..-.|. -.|..|+-+.||.+.||.+|+ ++||.
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~--~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~--~L~L~ 78 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAE--LGAVRWALARAGGSPLDPDASLAEAGVRDGE--LLVLV 78 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccC--CCCcceEEecCCCCCCCCCCCHHHcCCCCCC--eEEEe
Confidence 35554332 5677888889999999888888643321111 112233332 377899999999999999898 58876
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
-++
T Consensus 79 p~~ 81 (452)
T TIGR02958 79 PAS 81 (452)
T ss_pred eCC
Confidence 644
No 89
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=86.38 E-value=6.1 Score=24.76 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=35.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC----e-ecCC-CCcccccCCCCCC
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG----R-FLHS-NVTLGALGLTCSK 73 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G----k-~L~D-~~tL~~~~i~~~~ 73 (91)
...+..|...+||+.+...+.+.+- + ..+.||=-.+ . .|.+ +.||+++|+.+|.
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~--------i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ 73 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFN--------I-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQ 73 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT----------TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTE
T ss_pred cHhHhhccccChHHHHHHHHHHHhC--------C-CccceehhccCCcchhhhCCCCccHHHccCcCCC
Confidence 3777899999999999999999741 4 5667874322 2 3544 6899999999775
No 90
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=85.67 E-value=5.4 Score=24.36 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=25.0
Q ss_pred cCCCEEEEEeCCCCcHHHHHHHHhhcCC
Q psy5872 8 VSGKTKEFLFSPSDSAGDIAQHVFDNWP 35 (91)
Q Consensus 8 ~~g~~~~~~v~~~~TV~~lK~~I~~~~p 35 (91)
..|..+.+.++++.+..+|++.|++..+
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~ 34 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFK 34 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999999753
No 91
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=85.05 E-value=4.4 Score=24.29 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=34.2
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEc
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQ 54 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~ 54 (91)
+++-+++|+...+.+.|++||.++=+++-+. .+ +.++.-.|.+.
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~k-------r~-l~~~~~~v~~~ 45 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKK-------RG-LNPECCDVFLL 45 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHH-------cC-CCHHHEEEEEe
Confidence 4667889999999999999999999999885 33 55555554444
No 92
>smart00455 RBD Raf-like Ras-binding domain.
Probab=84.58 E-value=4.9 Score=23.75 Aligned_cols=49 Identities=10% Similarity=0.183 Sum_probs=39.3
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC--eecC
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG--RFLH 59 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G--k~L~ 59 (91)
.++-+++|+...+.+-|+.||.++=+.+-+. .+ +.++...+...| +.|+
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~k-------r~-l~~~~~~v~~~g~~k~ld 52 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKK-------RG-LNPECCVVRLRGEKKPLD 52 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHH-------cC-CCHHHEEEEEcCCCccee
Confidence 3566789999999999999999999999995 33 778888887755 4553
No 93
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=84.50 E-value=4.4 Score=24.06 Aligned_cols=56 Identities=9% Similarity=0.219 Sum_probs=35.5
Q ss_pred CC-CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 9 SG-KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 9 ~g-~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
.| +..+++++.+.||++|++.+.+..|. +.+ . -....+...|+...++. -+++|+.
T Consensus 16 ~g~~~~~~~~~~~~tv~~L~~~l~~~~p~-l~~---~-~~~~~vavN~~~v~~~~-----~l~dgDe 72 (82)
T PLN02799 16 TGVSDMTLELPAGSTTADCLAELVAKFPS-LEE---V-RSCCVLALNEEYTTESA-----ALKDGDE 72 (82)
T ss_pred hCCCeEEEECCCCCcHHHHHHHHHHHChh-HHH---H-hhCcEEEECCEEcCCCc-----CcCCCCE
Confidence 45 56778888899999999999887542 110 0 01234566777765433 4566664
No 94
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=84.44 E-value=3.8 Score=24.04 Aligned_cols=39 Identities=13% Similarity=0.279 Sum_probs=30.8
Q ss_pred CCCEEE-EEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC
Q psy5872 9 SGKTKE-FLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG 55 (91)
Q Consensus 9 ~g~~~~-~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G 55 (91)
.|..+- +.+..+.|..+|+.+|++.+| .+....+|-|..
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~--------~~~~~~~l~Y~D 48 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFG--------LLDEDFQLKYKD 48 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHT--------TSTSSEEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhC--------CCCccEEEEeeC
Confidence 444444 899999999999999999864 345888888865
No 95
>KOG0012|consensus
Probab=83.94 E-value=2.3 Score=33.14 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=47.2
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecC-C-CCcccccCCCCCCc
Q psy5872 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLH-S-NVTLGALGLTCSKT 74 (91)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~-D-~~tL~~~~i~~~~~ 74 (91)
..+.+++++...-....++..++.. .++..+..-|||+++.|. + ..+|.+||+..++.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d--------~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~ds 70 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKD--------TGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDS 70 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHH--------hCcccchhhcccCCCccccchhhhhhhccccccee
Confidence 4477888888888888888888874 338889999999999995 4 68899999987763
No 96
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=83.73 E-value=1.8 Score=27.70 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=24.0
Q ss_pred EEEEcCeecCCCCcccccCCCCCC-cEEEEEEecCCCCC
Q psy5872 50 RLIYQGRFLHSNVTLGALGLTCSK-TTVMHLVPRENLPE 87 (91)
Q Consensus 50 rLI~~Gk~L~D~~tL~~~~i~~~~-~~tvhlv~~~~~p~ 87 (91)
.|-|+||.|.++.+|++|-=++.. -++|-|--+...|+
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~g~P 41 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQGPP 41 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCCCCCC
Confidence 477999999999999999333222 33344433433333
No 97
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=82.44 E-value=7.6 Score=22.65 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=35.1
Q ss_pred cCCC--EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 8 VSGK--TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 8 ~~g~--~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
++|+ ...++++++.||.+|-+.+. +++....+...|+++..+ .-+++|+.
T Consensus 9 vng~~~~~~~~~~~~~tv~~ll~~l~------------~~~~~v~v~vNg~iv~~~-----~~l~~gD~ 60 (70)
T PRK08364 9 VIGRGIEKEIEWRKGMKVADILRAVG------------FNTESAIAKVNGKVALED-----DPVKDGDY 60 (70)
T ss_pred EeccccceEEEcCCCCcHHHHHHHcC------------CCCccEEEEECCEECCCC-----cCcCCCCE
Confidence 3555 66788899999999987763 345667888899888543 34566663
No 98
>KOG4250|consensus
Probab=81.89 E-value=6.7 Score=33.06 Aligned_cols=48 Identities=10% Similarity=0.313 Sum_probs=39.9
Q ss_pred EEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCC
Q psy5872 5 LILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS 60 (91)
Q Consensus 5 ~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D 60 (91)
|=+.++..+.+-++++.|+..+++.|+.. .| ++.+.|-|+|.|.....
T Consensus 319 Fs~~~~~~~~~~~~~~ntl~~~~~~I~~~-------Tg-ipe~~qeLL~e~~~~h~ 366 (732)
T KOG4250|consen 319 FSMVQATSHEYYVHADNTLHSLIERISKQ-------TG-IPEGKQELLFEGGLSHL 366 (732)
T ss_pred EeeccceEEEEecChhhhHHHHHHHHHHh-------hC-CCCccceeeeecCcccc
Confidence 33456788889999999999999999995 34 99999999999876643
No 99
>KOG1364|consensus
Probab=81.42 E-value=1.5 Score=33.84 Aligned_cols=64 Identities=16% Similarity=0.282 Sum_probs=50.7
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC---eecC--CCCcccccCCCCC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG---RFLH--SNVTLGALGLTCS 72 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G---k~L~--D~~tL~~~~i~~~ 72 (91)
.|++|+++|+..-..+-++++|..|-..+...- ++ .+-+..+|+++= |.|. .+.|+.++||++.
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~------dg-~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS 347 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHM------DG-SDKKRFKLVQAIPASKTLDYGADATFKEAGLANS 347 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhh------cc-cccccceeeecccchhhhhccccchHHHhccCcc
Confidence 388999999888888888999998888777641 23 456788999988 7774 3799999999854
No 100
>KOG0007|consensus
Probab=80.46 E-value=0.88 Score=34.54 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=41.2
Q ss_pred cCCCEEEEEeC-CCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcc
Q psy5872 8 VSGKTKEFLFS-PSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTL 64 (91)
Q Consensus 8 ~~g~~~~~~v~-~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL 64 (91)
.+|....+.+. .+..+..+|+++... ..++++.|++.|.|..|.|+.++
T Consensus 290 ~dg~~~~~~~~~~~~~~~~~k~k~~~~--------~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVIKITVQSLSENVASLKEKIADE--------SQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCceeeeccccccccccccccccccc--------cccchhheeeccCCcccCccccc
Confidence 46788888877 688999999999995 33899999999999999887554
No 101
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=80.23 E-value=6.8 Score=24.46 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=39.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccC-CCCcEEEEEcC--eecCCCCcccccCCCCCC
Q psy5872 12 TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVA-KADILRLIYQG--RFLHSNVTLGALGLTCSK 73 (91)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~-~~~~qrLI~~G--k~L~D~~tL~~~~i~~~~ 73 (91)
..-+-|+..+|+.++-++++.. ..+..-.. +...+|+-+.| +.+..+.|+++.||++=+
T Consensus 16 ~~Lv~VDt~dTmdqVA~k~A~H---sVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e 77 (85)
T PF06234_consen 16 LQLVPVDTEDTMDQVAAKVAHH---SVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPME 77 (85)
T ss_dssp EEEEEEETT-BHHHHHHHHHTT---TTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTE
T ss_pred EEEEEeCCCCcHHHHHHHHhhh---hcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcce
Confidence 4557889999999999999984 10111112 33478888999 999999999999998544
No 102
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=79.79 E-value=5.5 Score=25.03 Aligned_cols=55 Identities=5% Similarity=-0.081 Sum_probs=36.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 12 TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
.+...++=...++.||..++.+. + ++-+.-.+-.+...|+++++|-+-+++-...
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl-------~-~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGl 58 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRL-------G-ISLSDYEFWLQDIQLEPHKSLVDQCVQGEGL 58 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH---------S--SS-EEEETTEE--TTSBTTTSS----SE
T ss_pred eEEEEEecCCcHHHHHHHHHHhh-------C-CCcCCCeEEeccceecCCccHHHhhccccCE
Confidence 45567788889999999999963 2 5556666767888899999999999985443
No 103
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=79.00 E-value=5.2 Score=24.59 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=31.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCe
Q psy5872 12 TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGR 56 (91)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk 56 (91)
|+.+.+.+..+..+|.++|++..+ .+++..+|-|.-.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~--------l~~~~~~LSY~~~ 44 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALP--------QQAQRGQLSYRAP 44 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhc--------CChhhcEEEecCC
Confidence 677899999999999999999753 6788899988753
No 104
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=78.07 E-value=13 Score=29.86 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=47.3
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEE----cCee--cCCCCcccccCCCCCCcEE
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIY----QGRF--LHSNVTLGALGLTCSKTTV 76 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~----~Gk~--L~D~~tL~~~~i~~~~~~t 76 (91)
++||...|... +++.++++.+.|-.+|...+-.+ .+++++.+.- +|-+ +..++|+.++|++.|+...
T Consensus 3 ~rfRsk~G~~R-ve~qe~d~lg~l~~kll~~~~~n------~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLy 75 (571)
T COG5100 3 FRFRSKEGQRR-VEVQESDVLGMLSPKLLAFFEVN------YSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLY 75 (571)
T ss_pred EEEecCCCcee-eeccccchhhhhhHHHHhhhccC------CCccceEEEeCCCCCceeeecccccChhhhccccCcEEE
Confidence 67888887654 89999999999999998865322 3444444422 1221 3468999999999888533
Q ss_pred EE
Q psy5872 77 MH 78 (91)
Q Consensus 77 vh 78 (91)
+.
T Consensus 76 l~ 77 (571)
T COG5100 76 LE 77 (571)
T ss_pred EE
Confidence 33
No 105
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=76.34 E-value=13 Score=21.59 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=32.0
Q ss_pred EEEEEecCCCEEEEEeC-CCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC
Q psy5872 2 NLRLILVSGKTKEFLFS-PSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG 55 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~-~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G 55 (91)
.++++. .|..+.+.++ .+.|..+|+++|.+.++ .+....++-|..
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~--------~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFG--------LDAVSFKLKYPD 47 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhC--------CCCCcEEEEeeC
Confidence 455533 3678888888 89999999999999864 222455665554
No 106
>KOG3391|consensus
Probab=75.95 E-value=3.2 Score=28.34 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=38.7
Q ss_pred CCcHHHHHHHHhhcCCCCCc---------------ccccCCCCcEEEEEcCeec-CCCCcccccCCCCCCcEEEEEEecC
Q psy5872 20 SDSAGDIAQHVFDNWPEDWS---------------DEAVAKADILRLIYQGRFL-HSNVTLGALGLTCSKTTVMHLVPRE 83 (91)
Q Consensus 20 ~~TV~~lK~~I~~~~p~~~~---------------~~~~~~~~~qrLI~~Gk~L-~D~~tL~~~~i~~~~~~tvhlv~~~ 83 (91)
++|..+|-..|.+..|+--. +.+ .-+.++=-...|+-+ +|++||.+++++-|+. +.+.+.+
T Consensus 61 datL~ELtsLvkevnpeaR~kgt~f~fa~Vf~d~~~~~-y~~RevG~t~~g~Kg~ddnktL~~~kf~iGD~--lDVaI~~ 137 (151)
T KOG3391|consen 61 DATLRELTSLVKEVNPEARKKGTSFDFAVVFPDKKSPR-YIVREVGTTCLGRKGIDDNKTLQQTKFEIGDY--LDVAITP 137 (151)
T ss_pred hhhHHHHHHHHHHcCHHHhccCceEEEEEEeccCCCCC-ceeeeecccccCcccCCccchhhhCCccccce--EEEEecC
Confidence 57899999999887664310 011 112222223446555 8999999999999997 4445543
No 107
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=75.16 E-value=16 Score=22.56 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=27.0
Q ss_pred CEEEEEecCCCEEEEEeCC--CCcHHHHHHHHhhcC
Q psy5872 1 INLRLILVSGKTKEFLFSP--SDSAGDIAQHVFDNW 34 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~--~~TV~~lK~~I~~~~ 34 (91)
|+|+. +..|.+..+.+++ +.|-.+|++.|+..+
T Consensus 1 V~vKa-ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf 35 (81)
T cd06396 1 VNLKV-TYNGESQSFLVSDSENTTWASVEAMVKVSF 35 (81)
T ss_pred CEEEE-EECCeEEEEEecCCCCCCHHHHHHHHHHHh
Confidence 34444 5578999999999 779999999999974
No 108
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=72.21 E-value=23 Score=22.79 Aligned_cols=51 Identities=8% Similarity=-0.034 Sum_probs=34.5
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRL 51 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrL 51 (91)
|+|+|...+|+..++++.++.|+.+.=..---.||..++-.+.......++
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V 51 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIV 51 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEE
Confidence 689999999999999999999998775543334655543223233444444
No 109
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=72.19 E-value=19 Score=21.67 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=49.7
Q ss_pred ecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE-EcCeecCCCCcccccCCCCCCcEEEEEEecCC
Q psy5872 7 LVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI-YQGRFLHSNVTLGALGLTCSKTTVMHLVPREN 84 (91)
Q Consensus 7 ~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI-~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~~~~ 84 (91)
.++|+-..++.+++.-.-.+.++-.+.- ++ ...|++.-.|- -+|.+|+-++.+++||+..+- +++|.++..
T Consensus 2 vVNGqPv~VEANvnaPLh~v~akALe~s-gN----vgQP~ENWElkDe~G~vlD~~kKveD~Gftngv--kLFLsLKAG 73 (76)
T PF10790_consen 2 VVNGQPVQVEANVNAPLHPVRAKALEQS-GN----VGQPPENWELKDESGQVLDVNKKVEDFGFTNGV--KLFLSLKAG 73 (76)
T ss_pred eeCCCceeeecCCCCcchHHHHHHHhhc-cc----cCCCcccceeeccCCcEeeccchhhhccccccc--eEEEEeecc
Confidence 3688888999998887777777766531 11 11445544442 478889889999999999664 688877653
No 110
>KOG2507|consensus
Probab=71.79 E-value=7.1 Score=31.31 Aligned_cols=65 Identities=22% Similarity=0.199 Sum_probs=47.3
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEE--EEcCeec--CC-CCcccccCCCCCC
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRL--IYQGRFL--HS-NVTLGALGLTCSK 73 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrL--I~~Gk~L--~D-~~tL~~~~i~~~~ 73 (91)
.+|.||+.+|.++.=+|+.++-...+++.+... .+ +.....-| -|--|.. +| ++||.++.+-+..
T Consensus 315 ~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~-------~~-i~~g~f~LatpyPRReft~eDy~KtllEl~L~psa 384 (506)
T KOG2507|consen 315 VRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQN-------QT-IGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSA 384 (506)
T ss_pred eEEEEecCCccchhhcCCcchHHHHHHHHHHhc-------cc-ccccceeeccccccccccchhhhhhHHHhccCCcc
Confidence 368999999999999999998888999999874 12 33333222 3555555 34 6999999997554
No 111
>KOG2689|consensus
Probab=71.39 E-value=6.8 Score=29.53 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=45.3
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCc----EEEEEcCeecCC-CCcccccCCCCCC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADI----LRLIYQGRFLHS-NVTLGALGLTCSK 73 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~----qrLI~~Gk~L~D-~~tL~~~~i~~~~ 73 (91)
.|.||+.+|++...+|++..|...|+..|...-. .++.|..- -|..|.- +| .++|..+++-+-.
T Consensus 212 rlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~-----~~~~P~~f~t~fPR~tf~e---dD~~KpLq~L~L~Psa 280 (290)
T KOG2689|consen 212 RLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRG-----DGLDPYSFHTGFPRVTFTE---DDELKPLQELDLVPSA 280 (290)
T ss_pred EEEEEcCCCCeeeeecCchhhHHHHHHHHHHhcc-----CCCCCeeeecCCCceeccc---ccccccHHHhccccch
Confidence 5899999999999999999999999999998621 11112221 2333322 23 5899999987554
No 112
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=68.92 E-value=6.3 Score=24.04 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=17.8
Q ss_pred EEEEeCCCCcHHHHHHHHhhc
Q psy5872 13 KEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~ 33 (91)
+++++..++|+.++|+.+++.
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHH
T ss_pred eEEEccCcCcHHHHHHHHHHH
Confidence 468899999999999999984
No 113
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=68.52 E-value=24 Score=21.39 Aligned_cols=45 Identities=22% Similarity=0.334 Sum_probs=35.8
Q ss_pred EEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCe
Q psy5872 4 RLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGR 56 (91)
Q Consensus 4 ~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk 56 (91)
++-+++|++-.+.+-|+.||.++=.++-+. .+ +.++...+...|+
T Consensus 3 rV~LPdg~~T~V~vrpG~ti~d~L~kllek-------Rg-l~~~~~~vf~~g~ 47 (73)
T cd01817 3 RVILPDGSTTVVPTRPGESIRDLLSGLCEK-------RG-INYAAVDLFLVGG 47 (73)
T ss_pred EEECCCCCeEEEEecCCCCHHHHHHHHHHH-------cC-CChhHEEEEEecC
Confidence 345689999999999999999998888885 34 7777777766663
No 114
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=66.58 E-value=29 Score=21.61 Aligned_cols=52 Identities=15% Similarity=0.333 Sum_probs=37.8
Q ss_pred EEEEec-CCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCccc
Q psy5872 3 LRLILV-SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLG 65 (91)
Q Consensus 3 l~~~~~-~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~ 65 (91)
+++|.. .|+.+.+.++++.+-.+|.++|.+.++ + ...+++=|.-- .|-.|+.
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~--------~-~~~~~iKykDE--GD~iti~ 55 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFG--------F-KRRLKIKMKDD--GDMITMG 55 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhC--------C-CCceEEEEEcC--CCCcccc
Confidence 566666 789999999999999999999999752 3 24566655544 4445543
No 115
>KOG3309|consensus
Probab=65.86 E-value=9.2 Score=26.49 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=26.2
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHH
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQH 29 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~ 29 (91)
|+|+|...+|+.+.+...-++||.++-..
T Consensus 44 i~Itfv~~dG~~~~i~g~vGdtlLd~ah~ 72 (159)
T KOG3309|consen 44 IKITFVDPDGEEIKIKGKVGDTLLDAAHE 72 (159)
T ss_pred EEEEEECCCCCEEEeeeecchHHHHHHHH
Confidence 78999999999999999999999988544
No 116
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=65.78 E-value=24 Score=24.99 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=30.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEE--EEcCee---cCCCCccccc
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRL--IYQGRF---LHSNVTLGAL 67 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrL--I~~Gk~---L~D~~tL~~~ 67 (91)
+.+.+.++.+.||++|.+.++...+-. + -....+|| ++.||+ +..+.+|.+.
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~---~--~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFS---E--EGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT-------T--T----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCC---c--CCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 467888999999999999999963210 0 12346666 677776 4667777666
No 117
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=65.49 E-value=17 Score=20.58 Aligned_cols=53 Identities=8% Similarity=0.080 Sum_probs=33.7
Q ss_pred ecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 7 LVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 7 ~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
+++|+. ++++.+.||.+|.+.+.- +.+...+...|+++..+ .-.+.-+++|+.
T Consensus 3 ~iNg~~--~~~~~~~tv~~ll~~l~~------------~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~ 55 (65)
T cd00565 3 TVNGEP--REVEEGATLAELLEELGL------------DPRGVAVALNGEIVPRS-EWASTPLQDGDR 55 (65)
T ss_pred EECCeE--EEcCCCCCHHHHHHHcCC------------CCCcEEEEECCEEcCHH-HcCceecCCCCE
Confidence 345554 455678899999887643 45777888999998443 111234566664
No 118
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=62.74 E-value=24 Score=20.31 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=31.7
Q ss_pred EEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 13 KEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
..+++..+.|..+||.++... ++ -+||.|=...++..| ++|+.
T Consensus 8 k~~~~~~~~tl~~lr~~~k~~------------~D--I~I~NGF~~~~d~~L-----~e~D~ 50 (57)
T PF14453_consen 8 KEIETEENTTLFELRKESKPD------------AD--IVILNGFPTKEDIEL-----KEGDE 50 (57)
T ss_pred EEEEcCCCcCHHHHHHhhCCC------------CC--EEEEcCcccCCcccc-----CCCCE
Confidence 356788889999999987762 22 569999988777666 55653
No 119
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=61.64 E-value=23 Score=26.76 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=45.9
Q ss_pred EEEeCCCCcHHHHHHHHhhcC---CCCCc---cc-ccCCCCcEEEEEcCeecCCCCcccccCC---CCCCcEEEEE
Q psy5872 14 EFLFSPSDSAGDIAQHVFDNW---PEDWS---DE-AVAKADILRLIYQGRFLHSNVTLGALGL---TCSKTTVMHL 79 (91)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~---p~~~~---~~-~~~~~~~qrLI~~Gk~L~D~~tL~~~~i---~~~~~~tvhl 79 (91)
-|....-.-|.-++..|+++. |+... +. ...+.+.+.|.|.|.+|+.+-||+..+- +.+..+++|-
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~Y 326 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHY 326 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEE
Confidence 355555567888899999987 33211 01 1256889999999999999999988762 4455567764
No 120
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=59.98 E-value=12 Score=22.53 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=20.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcC
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNW 34 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~ 34 (91)
+.|-+-.+|+.|+++|++.|.++|
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f 26 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERF 26 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHH
Confidence 456666889999999999999975
No 121
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=59.46 E-value=22 Score=22.16 Aligned_cols=32 Identities=9% Similarity=0.293 Sum_probs=24.4
Q ss_pred EEEEEec-CCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 2 NLRLILV-SGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 2 ~l~~~~~-~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
.+++... ++..+++.++.++|+.+|-+.+...
T Consensus 18 ~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k 50 (106)
T PF00794_consen 18 KVSVHFENSQQSFTFQVDPNSTPEELIAQALKK 50 (106)
T ss_dssp EEEEEETTCSEEEEEEEETTS-HHHHHHHHHHH
T ss_pred EEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHH
Confidence 3445555 5579999999999999999888875
No 122
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=59.45 E-value=12 Score=22.89 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=18.7
Q ss_pred EEEEeCCCCcHHHHHHHHhhc
Q psy5872 13 KEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~ 33 (91)
+.+++..+.|+.++|+.+++.
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~ 22 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQ 22 (78)
T ss_pred eeEEccccccHHHHHHHHHHH
Confidence 468899999999999999985
No 123
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=58.29 E-value=37 Score=20.10 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=32.2
Q ss_pred CCCEEEEEeCC-CCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEE
Q psy5872 9 SGKTKEFLFSP-SDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTV 76 (91)
Q Consensus 9 ~g~~~~~~v~~-~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~t 76 (91)
.|. ..+++++ ..||++|++.+.+++|. |... ...+..+.--.++.-.++ .-+++|+.+.
T Consensus 14 ~g~-~~~~v~~~~~tv~~l~~~L~~~~~~-~~~~--~~~~~~~~aVN~~~~~~~-----~~l~dgDeVa 73 (81)
T PRK11130 14 VGT-DALELAADFPTVEALRQHLAQKGDR-WALA--LEDGKLLAAVNQTLVSFD-----HPLTDGDEVA 73 (81)
T ss_pred hCC-ceEEecCCCCCHHHHHHHHHHhCcc-HHhh--hcCCCEEEEECCEEcCCC-----CCCCCCCEEE
Confidence 453 2345543 57999999999998753 2111 123344444455443322 2467777533
No 124
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=57.59 E-value=29 Score=19.55 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=23.6
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
+++.+.+|+... ++.+.|+.++-..|...
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~ 29 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSS 29 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHH
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHH
Confidence 456668998876 78889999999999874
No 125
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=57.37 E-value=37 Score=19.89 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=37.0
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcE--EEEEcCeecCCCCccc
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADIL--RLIYQGRFLHSNVTLG 65 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~q--rLI~~Gk~L~D~~tL~ 65 (91)
+++-+++|+...+.+-|+.||.++=+++-+. .+ +.++.. ++.-..+.|+.+....
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~k-------r~-L~~~~~~V~~~~~~k~l~~~~d~~ 59 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKK-------RG-LNPECCDVRLVGEKKPLDWDQDSS 59 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHT-------TT---CCCEEEEEEEEEEEE-TTSBGG
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHH-------cC-CCHHHEEEEEcCCCccccCCCcee
Confidence 5667789999999999999999999998885 23 444444 3334566776555443
No 126
>KOG3439|consensus
Probab=56.83 E-value=39 Score=22.24 Aligned_cols=50 Identities=14% Similarity=0.249 Sum_probs=38.1
Q ss_pred CEEEEEecCC----CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeec
Q psy5872 1 INLRLILVSG----KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFL 58 (91)
Q Consensus 1 i~l~~~~~~g----~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L 58 (91)
|+|+||-..+ +...+.+++++|++-+-..|.... .++++++-++|-..-.
T Consensus 31 V~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~L--------kl~as~slflYVN~sF 84 (116)
T KOG3439|consen 31 VQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFL--------KLQASDSLFLYVNNSF 84 (116)
T ss_pred EEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHh--------CCcccCeEEEEEcCcc
Confidence 4566665544 466789999999999999998852 2778888888877666
No 127
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=55.52 E-value=40 Score=19.67 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=32.7
Q ss_pred EEEEecCCC----EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE
Q psy5872 3 LRLILVSGK----TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI 52 (91)
Q Consensus 3 l~~~~~~g~----~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI 52 (91)
|++-..++. ..++.+.+++|+++|-+.+.+...- .-++..-.|.
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l------~~~~~~y~L~ 52 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGL------AEDPSDYCLV 52 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTT------SSSGGGEEEE
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCC------CCCCCCEEEE
Confidence 566666777 8999999999999999999996421 1245666663
No 128
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=55.38 E-value=52 Score=20.94 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=27.3
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcC
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNW 34 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~ 34 (91)
..|.++.+....+.+..++|+.++-+.+.+.+
T Consensus 9 ~sf~lp~~s~k~v~IsS~tTt~eVI~~LL~KF 40 (96)
T cd01778 9 TSLPLPKDTAKHLHISSKTTVREVIEALLKKF 40 (96)
T ss_pred EEEeccCCceeEEEEecCCcHHHHHHHHHHhh
Confidence 35667788889999999999999999988864
No 129
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=53.91 E-value=34 Score=19.80 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=22.6
Q ss_pred CEEEEEecCCCEEEEEeC---CCCcHHHHHHHHhh
Q psy5872 1 INLRLILVSGKTKEFLFS---PSDSAGDIAQHVFD 32 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~---~~~TV~~lK~~I~~ 32 (91)
++|.|++.+|+++.+.++ ++-|-+++|.....
T Consensus 3 L~l~F~~~~gk~~ti~i~~pk~~lt~~~V~~~m~~ 37 (69)
T PF11148_consen 3 LELVFKTEDGKTFTISIPNPKEDLTEAEVKAAMQA 37 (69)
T ss_pred EEEEEEcCCCCEEEEEcCCCCCCCCHHHHHHHHHH
Confidence 368999999999999887 35555555544333
No 130
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=52.64 E-value=56 Score=20.52 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=26.5
Q ss_pred EEecCCCEEEEEeCCCCcHHHHHHHHhhcC
Q psy5872 5 LILVSGKTKEFLFSPSDSAGDIAQHVFDNW 34 (91)
Q Consensus 5 ~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~ 34 (91)
++-+.|++..+.|+.+.|..+|+.++.+..
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~ 46 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELF 46 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHh
Confidence 445688999999999999999999999974
No 131
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=50.86 E-value=33 Score=21.02 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=39.6
Q ss_pred EEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCe-ecC-----C-CCcccccCCCCCCcEE
Q psy5872 15 FLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGR-FLH-----S-NVTLGALGLTCSKTTV 76 (91)
Q Consensus 15 ~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk-~L~-----D-~~tL~~~~i~~~~~~t 76 (91)
+++++++|..+|-+.+.+.-.-.+.+.+ +..+.-.|++.+- .|+ + +++|.++ +.+|+..+
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PS-lt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~ 67 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPS-LTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEIT 67 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-E-EESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCc-ccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEE
Confidence 5899999999999999996211232233 5567777776664 232 2 6888888 77776533
No 132
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=50.84 E-value=28 Score=23.99 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=31.3
Q ss_pred EEEEeCC-CCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCccccc
Q psy5872 13 KEFLFSP-SDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGAL 67 (91)
Q Consensus 13 ~~~~v~~-~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~ 67 (91)
+-++++. .+.+..+++...+.+| ++.+ |+-|+++....|+.||
T Consensus 77 i~lele~~~~~ie~I~~iCee~lp--------f~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 77 IILELEDEEDVIEKIREICEEVLP--------FGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEecCcHHHHHHHHHHHHHhCC--------CceE----eeeeEEeccCCchhhh
Confidence 3356666 6788888888877654 2222 4579999999999998
No 133
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=49.40 E-value=46 Score=20.83 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=30.1
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
+.|++-..+|.++.+++.-+++..+|=+.+...
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~k 34 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAK 34 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHH
Confidence 468888999999999999999999999999885
No 134
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=47.43 E-value=37 Score=22.29 Aligned_cols=58 Identities=17% Similarity=0.085 Sum_probs=31.4
Q ss_pred eCCCCcHHHHHHHHhhcCCCCC------------c--ccccCCCCcEEEEEcCeec-CCCCcccccCCCCCCc
Q psy5872 17 FSPSDSAGDIAQHVFDNWPEDW------------S--DEAVAKADILRLIYQGRFL-HSNVTLGALGLTCSKT 74 (91)
Q Consensus 17 v~~~~TV~~lK~~I~~~~p~~~------------~--~~~~~~~~~qrLI~~Gk~L-~D~~tL~~~~i~~~~~ 74 (91)
.=.+.|..+|-..|.+.-|+.- . +.+..-..++--++.|+.. +|++||++++...|+.
T Consensus 43 tW~d~TLrEL~~Lik~~~~~~r~~~tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iGDy 115 (120)
T PF06487_consen 43 TWMDATLRELADLIKDVNPPARRRGTRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIGDY 115 (120)
T ss_dssp E-TT-BHHHHHHHHHHH-HHHHSTT-EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--TT-E
T ss_pred EcccCCHHHHHHHHHHhCcccCCCCCEEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcccCCE
Confidence 3367899998888887544320 0 0011122334456666665 6799999999999985
No 135
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=45.03 E-value=53 Score=19.78 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=19.3
Q ss_pred cCC-CEEEEEeCC-CCcHHHHHHHHhhc
Q psy5872 8 VSG-KTKEFLFSP-SDSAGDIAQHVFDN 33 (91)
Q Consensus 8 ~~g-~~~~~~v~~-~~TV~~lK~~I~~~ 33 (91)
-+. ..-.+.++. ..+|.+||..|.+.
T Consensus 6 kS~k~~~~i~fdG~~Isv~dLKr~I~~~ 33 (74)
T PF08783_consen 6 KSQKDYDTITFDGTSISVFDLKREIIEK 33 (74)
T ss_dssp TT-SSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred cccCCccEEEECCCeeEHHHHHHHHHHH
Confidence 344 466678885 67999999999885
No 136
>PRK08453 fliD flagellar capping protein; Validated
Probab=44.33 E-value=36 Score=28.60 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.9
Q ss_pred ecCCCEEEEEeCCCCcHHHHHHHHhh
Q psy5872 7 LVSGKTKEFLFSPSDSAGDIAQHVFD 32 (91)
Q Consensus 7 ~~~g~~~~~~v~~~~TV~~lK~~I~~ 32 (91)
...|+++++++...+|+.+|+++|-+
T Consensus 134 ~~~G~~~sIdi~~gtTL~~L~~~INd 159 (673)
T PRK08453 134 YTQGKDYAIDIKAGMTLGDVAQSITD 159 (673)
T ss_pred EECCEEEEEEeCCCCcHHHHHHHhcC
Confidence 45789999999999999999999996
No 137
>KOG4572|consensus
Probab=43.43 E-value=53 Score=28.95 Aligned_cols=63 Identities=11% Similarity=0.195 Sum_probs=43.9
Q ss_pred CCCEEEEEeCC-CCcHHHHHHHHhhcCCCCCcccccCCCCcEEE-EEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 9 SGKTKEFLFSP-SDSAGDIAQHVFDNWPEDWSDEAVAKADILRL-IYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 9 ~g~~~~~~v~~-~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrL-I~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
.|+..+++.+. +.|+.+||..|+..+ | .....|.| .-+|-.+.-++.|.+|.-.-.++..+++
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~-------~-~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiff 67 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEV-------G-HAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFF 67 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHh-------c-hhhceeeeeecCCcCcccccchhhhccccCCCCceEE
Confidence 57888888876 679999999999963 3 55555555 5677788878888887633223334444
No 138
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=43.17 E-value=60 Score=22.31 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=30.7
Q ss_pred EEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCccccc
Q psy5872 15 FLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGAL 67 (91)
Q Consensus 15 ~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~ 67 (91)
+++...+.+..+++...+.+| ++. =|.-|+++.+..|+.||
T Consensus 78 le~~~~~~i~~I~eiC~e~~p--------F~y----~i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 78 LELEDEDIVEEIEEICKEMLP--------FGY----EVRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEecCHHHHHHHHHHHHhhCC--------Cce----EeeeeeEeecCCchhhh
Confidence 455567788888888888765 222 25789999999999998
No 139
>KOG2561|consensus
Probab=42.84 E-value=22 Score=28.94 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=41.2
Q ss_pred EEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCC
Q psy5872 14 EFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCS 72 (91)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~ 72 (91)
.++....-|=.+|...|++.. + ++.+.+|.|-+||+|.-.+||.+-|++.+
T Consensus 53 l~k~sL~i~Gselqa~iakkl-------g-i~enhvKci~~~Kils~~ktlaeQglk~n 103 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKL-------G-IKENHVKCIINGKILSCRKTLAEQGLKIN 103 (568)
T ss_pred hhhcccccccHHHHHHHHHHc-------C-Cchhhhheeeccceeecccchhhhhhhhh
Confidence 344455566778999999963 3 77789999999999999999999998743
No 140
>cd00559 Cyanase_C Cyanase C-terminal domain. Cyanase (Cyanate lyase) is responsible for the hydrolysis of cyanate. It catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. This allows organisms that possess the enzyme to overcome the toxicity of environmental cyanate and to use cyanate as a source of nitrogen for growth. This enzyme is a homodecamer, formed by five dimers. Each monomer is composed of two domains, an N-terminal helix-turn-helix and this structurally unique C-terminal domain.
Probab=42.15 E-value=46 Score=19.96 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=22.7
Q ss_pred HHHHHHhhcCCCC----------CcccccCCCCcEEEEEcCeecC
Q psy5872 25 DIAQHVFDNWPED----------WSDEAVAKADILRLIYQGRFLH 59 (91)
Q Consensus 25 ~lK~~I~~~~p~~----------~~~~~~~~~~~qrLI~~Gk~L~ 59 (91)
.+|+.|.|.+... ..++....-+...+.+.||.|.
T Consensus 21 ~~K~li~E~FGDGIMSAIdF~~~v~k~~dp~gdRvvit~~GKfLp 65 (69)
T cd00559 21 TLKALIHEKFGDGIMSAIDFKLDVDKVEDPGGDRVVITLDGKFLP 65 (69)
T ss_pred HHHHHHHHHcCCceeeeEEeeeeEEeccCCCCCEEEEEEcceecc
Confidence 5778888876544 1122223457788899999985
No 141
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=41.24 E-value=31 Score=18.03 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=12.8
Q ss_pred CCCCcEEEEEcCeec
Q psy5872 44 AKADILRLIYQGRFL 58 (91)
Q Consensus 44 ~~~~~qrLI~~Gk~L 58 (91)
....++.+.|+|++.
T Consensus 3 ~~~~qLTIfY~G~V~ 17 (36)
T PF06200_consen 3 PETAQLTIFYGGQVC 17 (36)
T ss_pred CCCCcEEEEECCEEE
Confidence 356889999999988
No 142
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=41.07 E-value=25 Score=20.75 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=18.4
Q ss_pred eCCCCcHHHHHHHHhhcCCCC
Q psy5872 17 FSPSDSAGDIAQHVFDNWPED 37 (91)
Q Consensus 17 v~~~~TV~~lK~~I~~~~p~~ 37 (91)
=+|.++++++|...+..||+=
T Consensus 20 P~p~~spe~V~~~ya~~YPeL 40 (65)
T PF14454_consen 20 PNPSLSPEEVRDFYAAQYPEL 40 (65)
T ss_pred CCCCCCHHHHHHHHhhhChhh
Confidence 468999999999999999854
No 143
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=40.10 E-value=89 Score=19.69 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=21.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcC
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNW 34 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~ 34 (91)
..+++.+++++|+.+|.+.+...+
T Consensus 29 ~~~t~~v~~~~~p~~li~~~l~k~ 52 (108)
T smart00144 29 QTKTLKVNPNCTPDSVLAQAFTKM 52 (108)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHH
Confidence 688999999999999999888753
No 144
>PF00894 Luteo_coat: Luteovirus coat protein; InterPro: IPR001517 Barley yellow dwarf virus (BYDV) can be separated into two groups based on serological relationships, presumably governed by the viral capsid structure []. Coding regions of coat proteins have been identified for the MAV-PS1, P-PAV (group 1) and NY-RPV (group 2) isolates of BYDV. Group 1 proteins show 71% sequence similarity to each other, 51% similarity to those of group 2, and a high degree of similarity to those from other luteoviruses (including coat proteins from Beet western yellows virus (BWYV) [] and Potato leafroll virus (PLrV) [, ]). Among luteovirus coat protein sequences in general, several highly conserved domains can be identified, while other domains differentiate group 1 isolates from group 2 and other luteoviruses. Sequence comparisons between the genomes of PLrV, BWYV and BYDV have revealed ~65% protein sequence similarity between the capsid proteins of BWYV and PLrV and ~45% similarity between BYDV and PLrV []. The N-terminal regions of these sequences, like those of many plant virus capsid proteins, is highly basic. These regions may be involved in protein-RNA interaction.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=38.85 E-value=94 Score=21.04 Aligned_cols=63 Identities=16% Similarity=0.440 Sum_probs=40.0
Q ss_pred EEEEEec----CCCEEEEEeCCCCcHHHHHHHHhh---------cCCCC------CcccccCCCCcEEEEEcCeecCCCC
Q psy5872 2 NLRLILV----SGKTKEFLFSPSDSAGDIAQHVFD---------NWPED------WSDEAVAKADILRLIYQGRFLHSNV 62 (91)
Q Consensus 2 ~l~~~~~----~g~~~~~~v~~~~TV~~lK~~I~~---------~~p~~------~~~~~~~~~~~qrLI~~Gk~L~D~~ 62 (91)
+|.|++- +...+.+|+|+..+...|...|-. .||.. |- ....+|.+|+|.|. -+..
T Consensus 47 ~v~f~SeAsstt~GsIayElD~~ck~s~l~S~in~f~I~k~g~ksf~a~~InG~~w~---~ss~dQF~iLYKgN--G~ss 121 (138)
T PF00894_consen 47 KVEFISEASSTTSGSIAYELDPHCKQSTLGSYINKFSITKNGSKSFPAKQINGKEWH---DSSEDQFRILYKGN--GSSS 121 (138)
T ss_pred EEEEEeecccCCCccEEEEecCccchhhhhheeeeEeeecccccccchhccCCcccc---ccCcceEEEEEecC--CCCc
Confidence 4455443 235678999999999988877743 24443 42 13578889999996 2333
Q ss_pred cccccCC
Q psy5872 63 TLGALGL 69 (91)
Q Consensus 63 tL~~~~i 69 (91)
+-.++.|
T Consensus 122 ~AG~F~I 128 (138)
T PF00894_consen 122 IAGSFRI 128 (138)
T ss_pred cceeEEE
Confidence 4444444
No 145
>PF12747 DdrB: DdrB-like protein; InterPro: IPR024305 This family includes the Deinococcus DdrB protein, a ssDNA binding protein induced by ionizing radiation which has a role in genome reconstitution []. The structure of DdrB is known []. This family also includes some possibly distantly related cyanobacterial proteins.; PDB: 3KDV_D.
Probab=38.49 E-value=1.1e+02 Score=20.28 Aligned_cols=32 Identities=13% Similarity=-0.009 Sum_probs=27.0
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
.|.|++..|...++++....-+.+++......
T Consensus 3 ~~~~~t~~~~~~t~~l~~~~~L~dV~r~~g~~ 34 (123)
T PF12747_consen 3 KLLFPTDSGAKVTVELEDTVLLRDVQRLYGRQ 34 (123)
T ss_dssp EEEEE-TTS-EEEEEESSGGGHHHHHHHHHTT
T ss_pred eeEeeeeccCceeEEecchhHHHHHHHHHhhc
Confidence 57889999999999999999999999998883
No 146
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=37.91 E-value=67 Score=21.67 Aligned_cols=28 Identities=7% Similarity=-0.037 Sum_probs=22.7
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHH
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQ 28 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~ 28 (91)
|+|+|..-+|...+++++++.|+-+.=.
T Consensus 36 v~I~~~~~dG~~~~v~~~~G~sLLeal~ 63 (143)
T PTZ00490 36 VKVCVKKRDGTHCDVEVPVGMSLMHALR 63 (143)
T ss_pred EEEEEEcCCCCEEEEEECCCccHHHHHH
Confidence 4677777789999999999999987533
No 147
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=37.54 E-value=1.1e+02 Score=21.15 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=31.2
Q ss_pred EEEeCCCC-cHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCccccc
Q psy5872 14 EFLFSPSD-SAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGAL 67 (91)
Q Consensus 14 ~~~v~~~~-TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~ 67 (91)
-++++..+ +++.+++-..+.+|=+| + ++-|+++.+.-|+.+|
T Consensus 86 ~~eie~e~~~~e~ie~ic~e~lPf~y--------~----v~vG~F~r~kpTVTDy 128 (165)
T COG4055 86 ILEIEDEDETMEKIEEICDEMLPFGY--------E----VRVGKFTRRKPTVTDY 128 (165)
T ss_pred EEEecCcHhHHHHHHHHHHHhCCCce--------e----eeeeeeeccCCcchhh
Confidence 35666554 88888888888766332 1 5789999999999887
No 148
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=37.27 E-value=88 Score=18.31 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=25.8
Q ss_pred EEEEecC---CCEEEEEeCCCCcHHHHHHHHhhcC
Q psy5872 3 LRLILVS---GKTKEFLFSPSDSAGDIAQHVFDNW 34 (91)
Q Consensus 3 l~~~~~~---g~~~~~~v~~~~TV~~lK~~I~~~~ 34 (91)
|++-..+ +...++.+..++|..+|-+.+.+.+
T Consensus 2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~ 36 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKF 36 (87)
T ss_pred EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHh
Confidence 3444445 6788999999999999999999964
No 149
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=36.91 E-value=98 Score=18.76 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=35.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEE-cCeecCCCCcccccCCCCCCcEEEE
Q psy5872 10 GKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIY-QGRFLHSNVTLGALGLTCSKTTVMH 78 (91)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~-~Gk~L~D~~tL~~~~i~~~~~~tvh 78 (91)
+..+.+.+++..||+++-+. -| +|..++.+|. .|+.-+= +|.+++|+...++
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs-----------LG-VP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES-----------LG-VPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVY 74 (81)
T ss_pred CCceEEecCCCCcHHHHHHH-----------cC-CChHHeEEEEECCEECCC-----cccCCCCCEEEEE
Confidence 35777899999999887444 23 7888888776 5655432 3677888864444
No 150
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=35.25 E-value=92 Score=19.29 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=25.0
Q ss_pred cCCCEEEEEeCCCCcHHHHHHHHhhcCC
Q psy5872 8 VSGKTKEFLFSPSDSAGDIAQHVFDNWP 35 (91)
Q Consensus 8 ~~g~~~~~~v~~~~TV~~lK~~I~~~~p 35 (91)
..|+.....++++.|-++|.+++.+.++
T Consensus 7 y~gdi~it~~d~~~s~e~L~~~v~~~c~ 34 (83)
T cd06404 7 YNGDIMITSIDPSISLEELCNEVRDMCR 34 (83)
T ss_pred ecCcEEEEEcCCCcCHHHHHHHHHHHhC
Confidence 3789999999999999999999999753
No 151
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=35.22 E-value=26 Score=19.79 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=23.9
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
.+++++.+|+.|.++.+.-.--..+|..+...
T Consensus 2 ~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~ 33 (62)
T PF03931_consen 2 YVKLVSSDGQEFEVSREAAKQSKTIKNMLEDL 33 (62)
T ss_dssp EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCT
T ss_pred EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhh
Confidence 47899999999999976555555667777663
No 152
>KOG3751|consensus
Probab=34.94 E-value=68 Score=26.60 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=28.5
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
.|++-+-+|.+..+.|++.+|++++-+.+++.
T Consensus 190 vVKvfseDgasksL~Vder~tardV~~lL~eK 221 (622)
T KOG3751|consen 190 VVKVFSEDGASKSLLVDERMTARDVCQLLAEK 221 (622)
T ss_pred eEEEEccCCceeeEeecccccHHHHHHHHHHh
Confidence 46777789999999999999999999888884
No 153
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=33.73 E-value=57 Score=22.33 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=23.7
Q ss_pred HHHHHHhhcCCCC----------CcccccCCCCcEEEEEcCeecC
Q psy5872 25 DIAQHVFDNWPED----------WSDEAVAKADILRLIYQGRFLH 59 (91)
Q Consensus 25 ~lK~~I~~~~p~~----------~~~~~~~~~~~qrLI~~Gk~L~ 59 (91)
.+|+.|.|.++.. ..++..+.-+..++.+.||+|.
T Consensus 102 ~~K~~i~E~FGDGIMSAIdF~~~v~k~~dp~Gdrv~it~~GKfLp 146 (150)
T TIGR00673 102 TLKAVVHEKFGDGIMSAIDFKLDVEKVADPGGERAVITLNGKYLP 146 (150)
T ss_pred HHHHHHHHHhCcceeeeeeeceeeeeecCCCCCEEEEEecccccC
Confidence 5788888877654 1222223457799999999985
No 154
>PRK02866 cyanate hydratase; Validated
Probab=33.59 E-value=58 Score=22.21 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=23.5
Q ss_pred HHHHHHhhcCCCC----------CcccccCCCCcEEEEEcCeecC
Q psy5872 25 DIAQHVFDNWPED----------WSDEAVAKADILRLIYQGRFLH 59 (91)
Q Consensus 25 ~lK~~I~~~~p~~----------~~~~~~~~~~~qrLI~~Gk~L~ 59 (91)
.+|+.|.|.++.. ..++..+.-+..++.+.||+|.
T Consensus 99 ~~K~~i~E~FGDGIMSAIdf~~~v~k~~dp~Gdrv~it~~GKfLp 143 (147)
T PRK02866 99 TLKALIHEKFGDGIMSAIDFKLDVDKVEDPKGDRVVITLDGKFLP 143 (147)
T ss_pred HHHHHHHHHhCCceeeeeeeceeeeeccCCCCCEEEEEecccccC
Confidence 5788888877654 1222223456789999999985
No 155
>KOG4261|consensus
Probab=33.44 E-value=75 Score=27.66 Aligned_cols=65 Identities=25% Similarity=0.256 Sum_probs=43.0
Q ss_pred EEEEecC-CCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE------EcCeecCCCCcccccCCCCC
Q psy5872 3 LRLILVS-GKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI------YQGRFLHSNVTLGALGLTCS 72 (91)
Q Consensus 3 l~~~~~~-g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI------~~Gk~L~D~~tL~~~~i~~~ 72 (91)
|.++... +-..++.|+|+++|.+--..|.+++|+-- .-+.+..|. -.|-.|+.+.||..|-+..+
T Consensus 4 lsl~i~~~~v~ktmqfepst~vyda~~~ire~~~~~~-----~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~ 75 (1003)
T KOG4261|consen 4 LSLKISSANVVKTMQFEPSTLVYDACKVIREKFAEAD-----VGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNG 75 (1003)
T ss_pred eEEEEEecceeeeeeecCchHHHHHHHHHHHHhhhcc-----cCchhcceeeecCCcccceeecCCccHHHHHHhcc
Confidence 4444443 46778999999999999999999887551 113444332 24666777778777755433
No 156
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=33.31 E-value=77 Score=21.88 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=31.0
Q ss_pred ecCCCEEEEEeCCCCcHHH-HHHHHhhc---CCCCCcccccCCCCcEEEEEcCeecCCCCc
Q psy5872 7 LVSGKTKEFLFSPSDSAGD-IAQHVFDN---WPEDWSDEAVAKADILRLIYQGRFLHSNVT 63 (91)
Q Consensus 7 ~~~g~~~~~~v~~~~TV~~-lK~~I~~~---~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~t 63 (91)
+++|+.+.++++|.++.-+ |++.+.-. +.-+. -.-..-.+++.|+...-..+
T Consensus 7 tvNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~-----g~CGACtVlvDG~~v~SCl~ 62 (156)
T COG2080 7 TVNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGH-----GQCGACTVLVDGEAVNSCLT 62 (156)
T ss_pred EECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCC-----ccCCceEEEECCeEehHHHH
Confidence 7899999999999888765 44444431 11110 11244566777776644333
No 157
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=33.29 E-value=58 Score=21.51 Aligned_cols=43 Identities=9% Similarity=0.087 Sum_probs=31.1
Q ss_pred EeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeec-CCCCccccc
Q psy5872 16 LFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFL-HSNVTLGAL 67 (91)
Q Consensus 16 ~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L-~D~~tL~~~ 67 (91)
-|+.+.||+++...|..+. .++++++ ++|-+..| ..+.|+++.
T Consensus 46 lVP~d~tV~qF~~iIRkrl--------~l~~~k~-flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQAL--------GTSAKKV-TLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EcCCCCcHHHHHHHHHHHc--------CCChhHE-EEEECCccCCccchHHHH
Confidence 6899999999999999863 2667775 55555544 667777654
No 158
>PF02560 Cyanate_lyase: Cyanate lyase C-terminal domain; InterPro: IPR003712 Some bacteria can overcome the toxicity of environmental cyanate by hydrolysis of cyanate. This reaction is catalyzed by cyanate lyase (also known as cyanase) []. Cyanate lyase is found in bacteria and plants and catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. The cyanate lyase monomer is composed of two domains. The N-terminal domain shows structural similarity to the DNA-binding alpha-helix bundle motif. The C-terminal domain has an 'open fold' with no structural homology to other proteins. The dimer structure reveals the C-terminal domains to be intertwined, and the decamer is formed by a pentamer of these dimers. The active site of the enzyme is located between dimers and is comprised of residues from four adjacent subunits of the homodecamer []. ; GO: 0008824 cyanate hydratase activity, 0009439 cyanate metabolic process; PDB: 2IV1_B 2IUO_A 2IVQ_B 1DW9_A 1DWK_E 2IVG_G 2IU7_J 2IVB_A.
Probab=32.94 E-value=36 Score=20.65 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=21.8
Q ss_pred HHHHHHhhcCCCC----------CcccccCCCCcEEEEEcCeecC
Q psy5872 25 DIAQHVFDNWPED----------WSDEAVAKADILRLIYQGRFLH 59 (91)
Q Consensus 25 ~lK~~I~~~~p~~----------~~~~~~~~~~~qrLI~~Gk~L~ 59 (91)
.+|+.|.|.+... ..++....-+..++.+.||.|.
T Consensus 25 ~~K~li~E~FGDGIMSAIdF~~~v~k~~d~~GdRv~it~~GKfLp 69 (73)
T PF02560_consen 25 AIKALIHEKFGDGIMSAIDFKMDVEKVEDPKGDRVVITMNGKFLP 69 (73)
T ss_dssp HHHHHHHHHT-SEEEEEEEEEEEEEEEE-TTSEEEEEEEEEEEEE
T ss_pred HHHHHHHHhhCcceEEEeeEEEEEEEeeCCCCCEEEEEEeceecc
Confidence 5788888876544 1122223456788889999984
No 159
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=31.75 E-value=1.4e+02 Score=19.03 Aligned_cols=31 Identities=6% Similarity=0.203 Sum_probs=26.2
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
|+|-..+|.-.++.+..++||.+|-..++..
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK 35 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKK 35 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHh
Confidence 4555667777889999999999999999885
No 160
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=31.59 E-value=99 Score=22.32 Aligned_cols=44 Identities=11% Similarity=0.195 Sum_probs=30.1
Q ss_pred CEEEEEecC---CCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE
Q psy5872 1 INLRLILVS---GKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI 52 (91)
Q Consensus 1 i~l~~~~~~---g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI 52 (91)
|.|+|+-.. +..+++++...+|-.+|-++|++.. + .+|+.+||.
T Consensus 177 v~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l-------~-~dP~~lr~~ 223 (249)
T PF12436_consen 177 VEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHL-------N-VDPEHLRFF 223 (249)
T ss_dssp EEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHH-------T-S-GGGEEEE
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHH-------C-CChHHEEEE
Confidence 356676643 3589999999999999999999962 2 678888883
No 161
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=30.78 E-value=1.1e+02 Score=17.48 Aligned_cols=54 Identities=7% Similarity=0.193 Sum_probs=36.3
Q ss_pred CEEEEEecCC----CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCC
Q psy5872 1 INLRLILVSG----KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS 60 (91)
Q Consensus 1 i~l~~~~~~g----~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D 60 (91)
|.++|.+-.| ..-++.++.+.|..+|=+.|-+..++. -.+-.-.++..|..|.+
T Consensus 2 v~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~------~~~vpfdF~i~~~~lr~ 59 (65)
T PF08154_consen 2 VQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDE------EEPVPFDFLINGEELRT 59 (65)
T ss_pred EEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccC------CCCCcEEEEECCEEeec
Confidence 4677777777 245688999999999988777754222 23445567777777644
No 162
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=30.51 E-value=91 Score=18.34 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=16.1
Q ss_pred EEEEEecCCCEEEEEeCCCC
Q psy5872 2 NLRLILVSGKTKEFLFSPSD 21 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~ 21 (91)
++..+.-+|+.+++.+||.+
T Consensus 57 ev~~~~~dG~~~ev~vD~~t 76 (83)
T PF13670_consen 57 EVEARDKDGKKVEVYVDPAT 76 (83)
T ss_pred EEEEEECCCCEEEEEEcCCC
Confidence 45667789999999999864
No 163
>COG1551 CsrA RNA-binding global regulator CsrA [Signal transduction mechanisms]
Probab=29.14 E-value=1.4e+02 Score=18.11 Aligned_cols=33 Identities=6% Similarity=0.258 Sum_probs=26.3
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
|.+++..+.|+.+-+-+++--.|.=+++.|.++
T Consensus 18 I~itVl~i~gnqVkiGi~APk~v~I~R~Eiy~~ 50 (73)
T COG1551 18 IEITVLSIKGNQVKIGINAPKEVSIHREEIYQR 50 (73)
T ss_pred eEEEEEEEcCCeEEEeecCChhhhHHHHHHHHH
Confidence 678999999999998888877777666666664
No 164
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=28.48 E-value=65 Score=24.29 Aligned_cols=29 Identities=10% Similarity=0.364 Sum_probs=23.4
Q ss_pred EeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCe
Q psy5872 16 LFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGR 56 (91)
Q Consensus 16 ~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk 56 (91)
.+++++|.+.+|.+|+.. .+++.|-|.-|
T Consensus 301 vL~~~mtLaTVr~~~WK~------------~~di~L~YR~k 329 (331)
T PF11816_consen 301 VLPPDMTLATVRTFIWKS------------SGDIVLHYRRK 329 (331)
T ss_pred EcCCcCCHHHHHHhhccC------------CCeEEEEEEec
Confidence 367899999999999983 47888888644
No 165
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=27.97 E-value=1.5e+02 Score=18.13 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=42.3
Q ss_pred CEEEEEecCC----CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCee-c-CCCCccccc--CCCCC
Q psy5872 1 INLRLILVSG----KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRF-L-HSNVTLGAL--GLTCS 72 (91)
Q Consensus 1 i~l~~~~~~g----~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~-L-~D~~tL~~~--~i~~~ 72 (91)
|.|+|+-... +...+.++.+.||+++...|..+. + ..+++-=.+|-+.. + ..+.+++++ .-+++
T Consensus 2 v~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L-------~-l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~d 73 (87)
T cd01612 2 VTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRL-------K-LKASDSLFLYINNSFAPSPDENVGNLYRCFGTN 73 (87)
T ss_pred eEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHh-------C-CCccCeEEEEECCccCCCchhHHHHHHHhcCCC
Confidence 3456655543 355577999999999999998863 1 44444344566664 4 345666643 11334
Q ss_pred CcEEEEE
Q psy5872 73 KTTVMHL 79 (91)
Q Consensus 73 ~~~tvhl 79 (91)
....|+-
T Consensus 74 GfLyi~Y 80 (87)
T cd01612 74 GELIVSY 80 (87)
T ss_pred CEEEEEE
Confidence 5444443
No 166
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=27.67 E-value=1.7e+02 Score=18.60 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=30.6
Q ss_pred EEeCCCCcHHHHHHHHhhcCCCCCcccccCCC-CcEEEEEcCeecCCCCccccc
Q psy5872 15 FLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKA-DILRLIYQGRFLHSNVTLGAL 67 (91)
Q Consensus 15 ~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~-~~qrLI~~Gk~L~D~~tL~~~ 67 (91)
+-++.+.||+++...|..... .++ ..+-|...+.++..+.|+++.
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~--------l~~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQ--------LSPEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT----------TTS-EEEEBTTBESSTTSBHHHH
T ss_pred EEEcCCCchhhHHHHhhhhhc--------CCCCceEEEEEcCcccchhhHHHHH
Confidence 457889999999999999631 333 445665566455778888764
No 167
>PF12039 DUF3525: Protein of unknown function (DUF3525); InterPro: IPR021912 This family of proteins is functionally uncharacterised. This protein is found in viruses. Proteins in this family are about 360 amino acids in length.
Probab=27.61 E-value=74 Score=24.59 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=22.0
Q ss_pred CCcEEEEEcCeecC-CCCccccc--------CCCCCCcEEEEEE
Q psy5872 46 ADILRLIYQGRFLH-SNVTLGAL--------GLTCSKTTVMHLV 80 (91)
Q Consensus 46 ~~~qrLI~~Gk~L~-D~~tL~~~--------~i~~~~~~tvhlv 80 (91)
...-.+||-||+.+ |..++.+. -++.|. ++|||
T Consensus 24 dtnsmivyeg~fv~~~~tsvg~~fkltks~rp~~~g~--~~hlv 65 (453)
T PF12039_consen 24 DTNSMIVYEGRFVNQDATSVGDPFKLTKSRRPLKAGH--TVHLV 65 (453)
T ss_pred cCCceEEEeeeecCCCccccCChhhcccccccCCCCc--eEEec
Confidence 34557899999995 55555543 245564 78886
No 168
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=27.32 E-value=44 Score=26.96 Aligned_cols=27 Identities=15% Similarity=0.492 Sum_probs=23.3
Q ss_pred EEEeCCCCcHHHHHHHHhhcCCCCCcc
Q psy5872 14 EFLFSPSDSAGDIAQHVFDNWPEDWSD 40 (91)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~p~~~~~ 40 (91)
++.++|+..|.++|+.|++.+|.+|++
T Consensus 191 pl~fppd~~vq~v~e~Ve~~f~~~~G~ 217 (505)
T COG3046 191 PLKFPPDEIVQEVKERVERLFPDNFGQ 217 (505)
T ss_pred CCCCCCcchhHHHHHHHHhhCCCCCCc
Confidence 467889999999999999999887654
No 169
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=27.23 E-value=96 Score=21.38 Aligned_cols=26 Identities=8% Similarity=0.268 Sum_probs=20.4
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHH
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQH 29 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~ 29 (91)
++| +++|+.++++++|.++..++=+.
T Consensus 9 i~~-~vNG~~~~~~~~~~~~Ll~~LR~ 34 (159)
T PRK09908 9 IEC-TINGMPFQLHAAPGTPLSELLRE 34 (159)
T ss_pred EEE-EECCEEEEEecCCCCcHHHHHHH
Confidence 444 68999999999999988866443
No 170
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=26.75 E-value=86 Score=17.80 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=33.6
Q ss_pred ecCCCEEEEEeCCCCc-HHHHHHHH-hhcCCCCCcccccCCCCcEEEEEcCeec
Q psy5872 7 LVSGKTKEFLFSPSDS-AGDIAQHV-FDNWPEDWSDEAVAKADILRLIYQGRFL 58 (91)
Q Consensus 7 ~~~g~~~~~~v~~~~T-V~~lK~~I-~~~~p~~~~~~~~~~~~~qrLI~~Gk~L 58 (91)
+++|+...+++.++.| +.+.=..- --.+|-.+. .+..-.-..++ ..|...
T Consensus 2 ~i~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~-~g~Cg~C~v~v-~~G~~~ 53 (78)
T PF00111_consen 2 TINGKGVTVEVPPGETLLLDALERAGGIGIPYSCG-GGGCGTCRVRV-LEGEVQ 53 (78)
T ss_dssp ETTTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSS-SSSSSTTEEEE-EESEEE
T ss_pred EECCeEEEEEeCCCccHHHHHHHHcCCCCcccCCC-CCccCCcEEEE-eeCccc
Confidence 6789999999999999 88876664 335665553 23244555555 466663
No 171
>KOG2660|consensus
Probab=26.49 E-value=46 Score=25.69 Aligned_cols=47 Identities=9% Similarity=0.201 Sum_probs=37.3
Q ss_pred EEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCccccc
Q psy5872 15 FLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGAL 67 (91)
Q Consensus 15 ~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~ 67 (91)
+.++...||..||..+....- . --...++-++|.+..|.+..||.+.
T Consensus 168 vrcsa~~Tv~hlkkfl~~k~~-----~-~~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 168 LRCSAAATVNHLKKFLRKKMD-----N-LSNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred EeccHHHHHHHHHHHHHHHhc-----c-ccchhhheeecCCccccchhhhhhh
Confidence 567778999999999999521 0 1356788899999999999999854
No 172
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=25.88 E-value=98 Score=21.05 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=18.7
Q ss_pred ecCCCEEEEEeCCCCcHHH-HHHHH
Q psy5872 7 LVSGKTKEFLFSPSDSAGD-IAQHV 30 (91)
Q Consensus 7 ~~~g~~~~~~v~~~~TV~~-lK~~I 30 (91)
+++|+.++++++|.++..+ |++.+
T Consensus 5 ~vNG~~~~~~~~~~~~Ll~~LR~~l 29 (148)
T TIGR03193 5 TVNGRWREDAVADNMLLVDYLRDTV 29 (148)
T ss_pred EECCEEEEeecCCCCcHHHHHHHhc
Confidence 6899999999999888864 44443
No 173
>PF14044 NETI: NETI protein
Probab=25.79 E-value=1.1e+02 Score=17.64 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=15.9
Q ss_pred EEeCCCCcHHHHHHHHhhc
Q psy5872 15 FLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 15 ~~v~~~~TV~~lK~~I~~~ 33 (91)
++|.++.||++-=+++.+.
T Consensus 2 FeV~enETI~~CL~RM~~e 20 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKE 20 (57)
T ss_pred eeccCCCcHHHHHHHHHHc
Confidence 5788999999988888773
No 174
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=25.74 E-value=1.4e+02 Score=19.16 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=31.4
Q ss_pred EEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeec-CCCCccccc
Q psy5872 13 KEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFL-HSNVTLGAL 67 (91)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L-~D~~tL~~~ 67 (91)
.-+-|+.+.||+++...|..... .++++-=++|-|..+ .-+.+++++
T Consensus 43 ~KflVp~~~tv~~f~~~irk~l~--------l~~~~slfl~Vn~~~p~~~~~~~~l 90 (112)
T cd01611 43 KKYLVPSDLTVGQFVYIIRKRIQ--------LRPEKALFLFVNNSLPPTSATMSQL 90 (112)
T ss_pred ceEEecCCCCHHHHHHHHHHHhC--------CCccceEEEEECCccCCchhHHHHH
Confidence 34569999999999999988631 444443344555555 667777654
No 175
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=25.58 E-value=1.5e+02 Score=17.40 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.4
Q ss_pred CCEEEEEeCCCCcHHHHHHHHhhcC
Q psy5872 10 GKTKEFLFSPSDSAGDIAQHVFDNW 34 (91)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~ 34 (91)
+...++.+.+++|+.+|-..+.+..
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~ 39 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKF 39 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHh
Confidence 6789999999999999999998864
No 176
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=25.53 E-value=70 Score=19.03 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=18.7
Q ss_pred EeCCCCcHHHHHHHHhhcCCCC
Q psy5872 16 LFSPSDSAGDIAQHVFDNWPED 37 (91)
Q Consensus 16 ~v~~~~TV~~lK~~I~~~~p~~ 37 (91)
+-+|.+++++++...+..+|+=
T Consensus 18 DP~p~~spe~V~dfYs~~YPeL 39 (66)
T TIGR03738 18 DPSPAMSPEQVRDFYSAQYPEL 39 (66)
T ss_pred CCCCCCCHHHHHHHHhccCchh
Confidence 4568999999999999998854
No 177
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=25.45 E-value=1.7e+02 Score=18.02 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=28.7
Q ss_pred CCCEEEEEeCC-----CCcHHHHHHHHhhcCCCCCcccccCCC-CcEEEEEcC
Q psy5872 9 SGKTKEFLFSP-----SDSAGDIAQHVFDNWPEDWSDEAVAKA-DILRLIYQG 55 (91)
Q Consensus 9 ~g~~~~~~v~~-----~~TV~~lK~~I~~~~p~~~~~~~~~~~-~~qrLI~~G 55 (91)
.|..+-+.++. +.+..+|+++|++.+. +++ ....|-|.-
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~--------l~~~~~~~l~Y~D 52 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFS--------LSPDADLSLTYTD 52 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhC--------CCCCCcEEEEEEC
Confidence 66677777774 7999999999999863 443 566676653
No 178
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=25.32 E-value=59 Score=22.95 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=18.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 10 GKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
|--|-+.+.++.|.+++|++|+++
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~~r 155 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQKR 155 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHHHH
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHH
Confidence 345678889999999999999996
No 179
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=25.16 E-value=2.2e+02 Score=19.14 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=26.8
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
++.|+.-.+..+.+.+++..+..++.+.|.+.
T Consensus 2 ~i~l~v~~dg~i~V~aP~~~s~~~I~~fl~~~ 33 (205)
T PF01863_consen 2 NIRLRVDPDGEIVVSAPPRVSKEEIERFLRSK 33 (205)
T ss_pred eEEEEEcCCCEEEEEECCCCCHHHHHHHHHHH
Confidence 46677777688899999999999999988874
No 180
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=24.14 E-value=1.5e+02 Score=21.41 Aligned_cols=23 Identities=9% Similarity=-0.051 Sum_probs=20.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
+++.+++++.+||.++=..|.+.
T Consensus 24 ~~y~v~~~~~~tvLdaL~~Ik~~ 46 (239)
T PRK13552 24 VTYQLEETPGMTLFIALNRIREE 46 (239)
T ss_pred EEEEecCCCCCCHHHHHHHHHhc
Confidence 56888888999999999999875
No 181
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=23.91 E-value=1.3e+02 Score=21.88 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=19.1
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHH
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDI 26 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~l 26 (91)
|+| +++|+.+++++++..|+.++
T Consensus 52 i~~-~VNG~~~~~~v~~~~tLLd~ 74 (217)
T PRK11433 52 VTL-KVNGKTEQLEVDTRTTLLDA 74 (217)
T ss_pred EEE-EECCEEEEEecCCCCcHHHH
Confidence 555 58999999999999998854
No 182
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=23.88 E-value=1.5e+02 Score=16.59 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=32.7
Q ss_pred ecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 7 LVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 7 ~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
.++|+.+.+ + ..|+.+|.+.+. ++++.+.+-..|+++.- ..-.+.-+++|+.
T Consensus 4 ~~Ng~~~~~--~-~~tl~~Ll~~l~------------~~~~~vavavN~~iv~~-~~~~~~~L~dgD~ 55 (65)
T PRK06488 4 FVNGETLQT--E-ATTLALLLAELD------------YEGNWLATAVNGELVHK-EARAQFVLHEGDR 55 (65)
T ss_pred EECCeEEEc--C-cCcHHHHHHHcC------------CCCCeEEEEECCEEcCH-HHcCccccCCCCE
Confidence 568887776 4 458988887652 33456677888888852 2222345566664
No 183
>KOG4842|consensus
Probab=23.62 E-value=26 Score=26.30 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=37.3
Q ss_pred cCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcc
Q psy5872 8 VSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTL 64 (91)
Q Consensus 8 ~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL 64 (91)
..|..+.++++.+++|.+.+.+++.. +.+++...|+++.+ .|++...|
T Consensus 10 ~~gn~i~ls~~~~~ri~D~~~~l~K~--------~~vss~~~kll~~~-llk~iahl 57 (278)
T KOG4842|consen 10 KSGNAIYLSMAGSQRIPDKNPHLQKV--------AVVSSKPNKLLALN-LLKEIAHL 57 (278)
T ss_pred ecCcEEEEEeccccccCCCCccccee--------eeeccchHHHHhhh-hhhhhhhh
Confidence 37889999999999999999999883 45788888888776 44444333
No 184
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=23.55 E-value=1.5e+02 Score=16.48 Aligned_cols=39 Identities=8% Similarity=0.138 Sum_probs=26.5
Q ss_pred ecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecC
Q psy5872 7 LVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLH 59 (91)
Q Consensus 7 ~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~ 59 (91)
+++|+.. +++++.||.+|=+.+. ++....-+.+.|.++.
T Consensus 4 ~vNG~~~--~~~~~~tl~~lL~~l~------------~~~~~vav~vNg~iv~ 42 (66)
T PRK05659 4 QLNGEPR--ELPDGESVAALLAREG------------LAGRRVAVEVNGEIVP 42 (66)
T ss_pred EECCeEE--EcCCCCCHHHHHHhcC------------CCCCeEEEEECCeEeC
Confidence 4677744 6677889887755431 4566777788887775
No 185
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=23.55 E-value=94 Score=25.89 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=25.1
Q ss_pred CEEEEEecCCCEEEEEeCCC---------CcHHHHHHHHhhc
Q psy5872 1 INLRLILVSGKTKEFLFSPS---------DSAGDIAQHVFDN 33 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~---------~TV~~lK~~I~~~ 33 (91)
|.|+|...+|++..+.+... .|+++||..|.++
T Consensus 249 ~~i~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~~ 290 (603)
T PRK05841 249 LNITIQKEDGKKEDFVFTYGDAEKGENQFKTLGDLKKLLKEK 290 (603)
T ss_pred EEEEEecCCCcEEEEEEeecCccccCCceeechhhhhhhhhc
Confidence 46788888897666655443 4799999999995
No 186
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=23.53 E-value=97 Score=19.81 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=39.8
Q ss_pred CCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCC-cccccCCCCCCcEEEEEEecCCCC
Q psy5872 18 SPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNV-TLGALGLTCSKTTVMHLVPRENLP 86 (91)
Q Consensus 18 ~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~-tL~~~~i~~~~~~tvhlv~~~~~p 86 (91)
.+..|..++=+.+.+...-. .+..=....|++|+.+.+.. .|--+++..+ ++.+-+|++.+
T Consensus 28 ~~~~t~~~~l~~l~~~l~lh-----~VevIg~E~I~A~~ll~~~~~~L~H~~~~~~---~l~l~vrs~~~ 89 (104)
T PF14807_consen 28 SSQRTLPEFLQRLQQKLRLH-----VVEVIGNEGIFACQLLNSSPVCLLHCRVNAG---TLDLWVRSSDS 89 (104)
T ss_pred cCcCCHHHHHHHHHHhcCce-----EEEEeCccceeeeeccCCCCeEEEEEEecCC---eEEEEEEcCCC
Confidence 45567776666666531100 12222337899999998776 9999999633 68888887655
No 187
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors. ; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
Probab=23.48 E-value=63 Score=18.12 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=14.3
Q ss_pred EEEEEec-CCCEEEEEeCCCCc
Q psy5872 2 NLRLILV-SGKTKEFLFSPSDS 22 (91)
Q Consensus 2 ~l~~~~~-~g~~~~~~v~~~~T 22 (91)
++++|.+ +|..++..+.++++
T Consensus 36 ~~klknl~tG~~~e~tf~s~d~ 57 (58)
T PF08207_consen 36 RVKLKNLRTGSKVEKTFRSGDK 57 (58)
T ss_dssp EEEEEETTTTEEEEEEEETT-E
T ss_pred EEEEEECCCCCEEEEEECCCCc
Confidence 4666666 77888888877665
No 188
>PHA01814 hypothetical protein
Probab=23.29 E-value=1e+02 Score=20.38 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=20.5
Q ss_pred CCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCC
Q psy5872 19 PSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS 60 (91)
Q Consensus 19 ~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D 60 (91)
-+-||.++-.-... +-.+++.+||+||++-|
T Consensus 99 m~~tiddvls~fek-----------plesdi~iiyq~kviyd 129 (137)
T PHA01814 99 MGCTIDDVLSNFEK-----------PLESDITIIYQNKVIYD 129 (137)
T ss_pred EccCHHHHHhhccC-----------ccccceEEEEeccEEEe
Confidence 35677776443322 45688999999998833
No 189
>PF07566 DUF1543: Domain of Unknown Function (DUF1543); InterPro: IPR011440 This domain is found as 1-2 copies in a small family of proteins of unknown function.; PDB: 2QSD_F.
Probab=23.28 E-value=50 Score=18.33 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=17.6
Q ss_pred EEeCCCCcHHHHHHHHhhcCCCCC
Q psy5872 15 FLFSPSDSAGDIAQHVFDNWPEDW 38 (91)
Q Consensus 15 ~~v~~~~TV~~lK~~I~~~~p~~~ 38 (91)
+.+--..|..+.|.++.+.|++++
T Consensus 8 ~~fvVa~s~~ea~~~~k~~W~~~~ 31 (52)
T PF07566_consen 8 VRFVVAESIEEAKPKAKQRWFGDK 31 (52)
T ss_dssp EEEEEESSCHHHHHHHHCC-SSES
T ss_pred eEEEEECCHHHHHHHHHHhhhhcc
Confidence 333345688999999999999774
No 190
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=22.89 E-value=31 Score=24.35 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=15.3
Q ss_pred EEEEcCeecCCCCcccccCCC
Q psy5872 50 RLIYQGRFLHSNVTLGALGLT 70 (91)
Q Consensus 50 rLI~~Gk~L~D~~tL~~~~i~ 70 (91)
||-|.|.+++..=..+.+||+
T Consensus 12 ~ldYdGSqI~~~wA~~~fgI~ 32 (189)
T COG2029 12 RLDYDGSQIRSAWAYRNFGIK 32 (189)
T ss_pred cccCchhhhhhhHhHhhcCcC
Confidence 366777777777777778887
No 191
>cd08545 YcnI_like Reeler-like domain of YcnI and similar proteins. YcnI is a copper-responsive gene of Bacillus subtilis. It is homologous to an uncharacterized protein from Nocardia farcinica, which shares a conserved three-dimensional structure with cohesins and the reeler domain. Some members in this YcnI_like family have C-terminal domains (DUF461) that may bind copper.
Probab=22.17 E-value=53 Score=22.42 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=32.1
Q ss_pred EEEEecCC-CEEEEEeCCCCcHHHHHHHHhh----------------cCCCCCccccc-CCCCcEEEEEcCeecCC-CCc
Q psy5872 3 LRLILVSG-KTKEFLFSPSDSAGDIAQHVFD----------------NWPEDWSDEAV-AKADILRLIYQGRFLHS-NVT 63 (91)
Q Consensus 3 l~~~~~~g-~~~~~~v~~~~TV~~lK~~I~~----------------~~p~~~~~~~~-~~~~~qrLI~~Gk~L~D-~~t 63 (91)
|++++..| .....+..+++|+.-.|..+.+ .|-.. .. .+...++|.+.++.+.+ ..+
T Consensus 36 v~V~lP~gv~~v~p~p~pGWt~~~~~~~~~~p~~~hg~~vt~~v~~VtWt~~----~~~~~~~f~eF~~~~~~~~~~~~~ 111 (152)
T cd08545 36 VRVKLPEGVASVKPQPKPGWTVEVTKGKLAKPYTTHGKTVTEGVTSVTWTAG----DGGPDGQFDEFVLSAKLPPDPGDT 111 (152)
T ss_pred EEEEcCCCccccceecCCCCEEEEEecccCCceecCCceeccceEEEEEeCC----CCCCCCceEEEEEEeecCCCCCCE
Confidence 44444444 2333444467777777766521 13211 11 34566689999999977 555
Q ss_pred c
Q psy5872 64 L 64 (91)
Q Consensus 64 L 64 (91)
|
T Consensus 112 l 112 (152)
T cd08545 112 L 112 (152)
T ss_pred E
Confidence 4
No 192
>PLN02828 formyltetrahydrofolate deformylase
Probab=21.67 E-value=18 Score=26.88 Aligned_cols=40 Identities=18% Similarity=0.042 Sum_probs=26.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeec
Q psy5872 12 TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFL 58 (91)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L 58 (91)
+..+.+++++|+++|.+++.+. |...=+..++++..|+++
T Consensus 219 Q~~v~V~~~dt~~~L~~r~~~~-------E~~~l~~av~~~~~~~~~ 258 (268)
T PLN02828 219 QMVERVSHRDNLRSFVQKSENL-------EKQCLAKAIKSYCELRVL 258 (268)
T ss_pred EEEEecCCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhCCeE
Confidence 4567899999999999999885 222234444555555555
No 193
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=21.58 E-value=2e+02 Score=17.44 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=38.5
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCee
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRF 57 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~ 57 (91)
+++|+..+|....++++++.|+.+.=..---.+|-.+. .|....-..|++ .|.+
T Consensus 4 ~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~-~G~Cg~C~v~v~-~G~~ 57 (97)
T TIGR02008 4 KVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCR-AGACSTCAGKVE-EGTV 57 (97)
T ss_pred EEEEEECCCCEEEEEECCCCcHHHHHHHcCCCCCcCCC-CccCCCCceEEE-eCcE
Confidence 46666678888999999999998875444445666654 565677788885 5554
No 194
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=21.06 E-value=2.2e+02 Score=18.14 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=25.3
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNW 34 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~ 34 (91)
.++|..-+|.+..+.|..-.+-.++|+++-..+
T Consensus 2 vi~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKf 34 (105)
T PF14847_consen 2 VIRFILEDGSTKTVNVSGCFNAQEIKRRVLKKF 34 (105)
T ss_dssp EEEEEETTTEEEEEE--S--HHHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEEECCCCCHHHHHHHHHHHc
Confidence 367888899999999999999999999999864
No 195
>COG1978 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.74 E-value=1.8e+02 Score=19.91 Aligned_cols=31 Identities=10% Similarity=0.107 Sum_probs=26.0
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
|-.|+-+|..+-+.+..-..|.+|+++|.++
T Consensus 52 ~~~r~gsGa~~f~~v~~v~ki~slrqrI~~E 82 (152)
T COG1978 52 VHHRSGSGAKVFYNVEKVPKINSLRQRIMEE 82 (152)
T ss_pred EEEEcCCCcEEEEEeEEcCchhhHHHHHHHH
Confidence 4556778888888888888899999999984
No 196
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=20.27 E-value=1.8e+02 Score=16.21 Aligned_cols=52 Identities=8% Similarity=0.018 Sum_probs=31.9
Q ss_pred cCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 8 VSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 8 ~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
++|+.+ +++.+.||.+|.+.+.- +++...+...|+++..+. -.++-+++|+.
T Consensus 3 iNg~~~--~~~~~~tv~~ll~~l~~------------~~~~v~v~vN~~iv~~~~-~~~~~L~~gD~ 54 (64)
T TIGR01683 3 VNGEPV--EVEDGLTLAALLESLGL------------DPRRVAVAVNGEIVPRSE-WDDTILKEGDR 54 (64)
T ss_pred ECCeEE--EcCCCCcHHHHHHHcCC------------CCCeEEEEECCEEcCHHH-cCceecCCCCE
Confidence 456555 45677899999887543 356677888898883211 11234566653
No 197
>PLN00036 40S ribosomal protein S4; Provisional
Probab=20.22 E-value=46 Score=24.82 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 44 AKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 44 ~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
+....+.+|.+|+-+----++.+.....+.+.++|+
T Consensus 175 fe~G~l~~vtgG~n~GrvG~I~~i~~~~~~~~iV~i 210 (261)
T PLN00036 175 FDVGNLVMVTGGRNRGRVGVIKNREKHKGSFEIIHV 210 (261)
T ss_pred cCCCCEEEEECCeeceeEEEEEEEEecCCCCCEEEE
Confidence 668899999999987554444444444455556665
No 198
>KOG1839|consensus
Probab=20.12 E-value=4e+02 Score=24.38 Aligned_cols=74 Identities=15% Similarity=0.066 Sum_probs=51.3
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccc-cCCCCCCcEEEEEEe
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGA-LGLTCSKTTVMHLVP 81 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~-~~i~~~~~~tvhlv~ 81 (91)
+.+....|....+++..+.+|-++.+.+... +-...-....|.+.+..|++...... ++-+ ..+++-+|.
T Consensus 35 ~~i~p~~~~~~~~~l~~~~~v~~~~q~l~~~-------~~t~~~tc~~L~~~~~~~d~~~~~~~i~~~~--~~~~l~~v~ 105 (1236)
T KOG1839|consen 35 INIQPSTGGLLSFELSSFSKVQDVRQVLLDR-------PLTCYITCLSLLLDESKLDYFHIKKKISSGK--PGCVLASVL 105 (1236)
T ss_pred ccccCCCCCceEEEecCcchhhhHHHHHhcc-------cccCceeEEEEEecccccccccceeeecCCC--cceEEEEec
Confidence 3444557788999999999999999999995 22245567778888877776544443 3344 235777777
Q ss_pred cCCC
Q psy5872 82 RENL 85 (91)
Q Consensus 82 ~~~~ 85 (91)
.+..
T Consensus 106 ~pY~ 109 (1236)
T KOG1839|consen 106 GPYT 109 (1236)
T ss_pred ccCC
Confidence 6654
No 199
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=20.07 E-value=70 Score=16.52 Aligned_cols=15 Identities=7% Similarity=0.080 Sum_probs=11.1
Q ss_pred CCCcHHHHHHHHhhc
Q psy5872 19 PSDSAGDIAQHVFDN 33 (91)
Q Consensus 19 ~~~TV~~lK~~I~~~ 33 (91)
.+.||.+||+.+.+.
T Consensus 2 ~sltV~~Lk~iL~~~ 16 (35)
T PF12949_consen 2 KSLTVAQLKRILDEH 16 (35)
T ss_dssp TT--SHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHc
Confidence 367999999999984
No 200
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=20.04 E-value=92 Score=19.00 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=13.2
Q ss_pred cHHHHHHHHhhcCCCC
Q psy5872 22 SAGDIAQHVFDNWPED 37 (91)
Q Consensus 22 TV~~lK~~I~~~~p~~ 37 (91)
.|+.||.+++..+|..
T Consensus 72 rir~lk~kl~~~yP~~ 87 (88)
T PF10241_consen 72 RIRSLKAKLAKQYPEE 87 (88)
T ss_pred HHHHHHHHHHHhCCCc
Confidence 5788999999988754
Done!