Query psy5872
Match_columns 91
No_of_seqs 108 out of 843
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 20:14:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgh_A Ubiquitin-like 3, HCG-1 100.0 8.2E-31 2.8E-35 171.0 12.2 91 1-91 17-107 (116)
2 2gow_A HCG-1 protein, ubiquiti 100.0 1.2E-29 4.1E-34 167.2 10.7 89 1-90 18-107 (125)
3 1se9_A Ubiquitin family; ubiqu 99.9 3.1E-27 1E-31 156.0 11.9 85 1-88 17-108 (126)
4 2lxa_A Ubiquitin-like protein 99.9 1.6E-22 5.6E-27 125.5 7.7 75 1-85 2-80 (87)
5 3phx_B Ubiquitin-like protein 99.9 6.6E-22 2.3E-26 118.7 9.5 73 1-83 5-77 (79)
6 3plu_A Ubiquitin-like modifier 99.9 4.4E-22 1.5E-26 125.3 8.4 70 1-80 22-91 (93)
7 3m62_B UV excision repair prot 99.9 5E-22 1.7E-26 126.5 8.5 75 1-85 2-76 (106)
8 4dwf_A HLA-B-associated transc 99.9 1.2E-21 4E-26 120.3 9.1 74 1-85 6-79 (90)
9 2wyq_A HHR23A, UV excision rep 99.9 2.3E-21 7.9E-26 117.4 9.6 77 1-84 6-82 (85)
10 1uel_A HHR23B, UV excision rep 99.9 6E-21 2.1E-25 119.0 11.6 80 1-87 1-80 (95)
11 1wgd_A Homocysteine-responsive 99.9 2.9E-21 1E-25 119.7 9.7 81 1-89 8-92 (93)
12 2kk8_A Uncharacterized protein 99.9 1.7E-21 5.9E-26 119.6 8.5 72 2-83 12-84 (84)
13 1wju_A NEDD8 ultimate buster-1 99.9 1.3E-21 4.4E-26 124.6 8.0 65 2-74 17-85 (100)
14 4eew_A Large proline-rich prot 99.9 2.2E-21 7.5E-26 118.7 8.6 71 1-82 18-88 (88)
15 4a20_A Ubiquitin-like protein 99.9 3.3E-21 1.1E-25 122.0 9.7 74 1-83 20-96 (98)
16 4fbj_B NEDD8; effector-HOST ta 99.9 3.7E-21 1.3E-25 118.4 9.6 74 1-84 1-74 (88)
17 2kdb_A Homocysteine-responsive 99.9 1.8E-21 6E-26 123.4 7.4 72 1-80 24-99 (99)
18 3v6c_B Ubiquitin; structural g 99.8 5E-21 1.7E-25 118.1 8.9 73 1-83 18-90 (91)
19 2faz_A Ubiquitin-like containi 99.8 7.4E-21 2.5E-25 113.7 9.3 73 1-83 3-77 (78)
20 1uh6_A Ubiquitin-like 5; beta- 99.8 1.8E-21 6E-26 124.0 6.2 71 1-81 29-99 (100)
21 1ttn_A DC-UBP, dendritic cell- 99.8 1.3E-20 4.6E-25 119.7 9.2 76 1-86 24-99 (106)
22 3dbh_I NEDD8; cell cycle, acti 99.8 1E-20 3.6E-25 115.0 8.0 73 1-83 13-85 (88)
23 1wy8_A NP95-like ring finger p 99.8 4.2E-20 1.4E-24 113.0 10.6 78 1-88 8-87 (89)
24 2uyz_B Small ubiquitin-related 99.8 8.4E-21 2.9E-25 113.9 7.2 73 1-83 4-76 (79)
25 4hcn_B Polyubiquitin, ubiquiti 99.8 1.7E-20 5.9E-25 117.4 8.9 73 1-83 23-95 (98)
26 1ndd_A NEDD8, protein (ubiquit 99.8 3.5E-20 1.2E-24 109.3 9.7 73 1-83 1-73 (76)
27 2daf_A FLJ35834 protein; hypot 99.8 9E-21 3.1E-25 123.7 7.7 77 2-88 17-94 (118)
28 2dzi_A Ubiquitin-like protein 99.8 2E-20 6.9E-25 112.0 8.7 73 1-83 8-80 (81)
29 3n3k_B Ubiquitin; hydrolase, p 99.8 2.9E-20 9.9E-25 112.3 9.3 74 1-84 4-77 (85)
30 2bwf_A Ubiquitin-like protein 99.8 3.7E-20 1.3E-24 110.0 9.4 72 1-83 5-76 (77)
31 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 4.4E-20 1.5E-24 114.3 9.9 73 1-83 2-74 (96)
32 1wia_A Hypothetical ubiquitin- 99.8 4E-20 1.4E-24 114.9 9.6 73 1-86 8-81 (95)
33 2hj8_A Interferon-induced 17 k 99.8 1.4E-20 4.6E-25 115.8 7.3 74 1-84 5-78 (88)
34 3mtn_B UBA80, ubcep1, ubiquiti 99.8 5E-20 1.7E-24 111.1 9.2 74 1-84 4-77 (85)
35 2kan_A Uncharacterized protein 99.8 3.9E-20 1.3E-24 115.6 8.9 73 1-84 16-89 (94)
36 1wyw_B Ubiquitin-like protein 99.8 1.9E-20 6.4E-25 117.3 7.4 73 1-83 22-94 (97)
37 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 4.6E-20 1.6E-24 112.2 8.7 74 1-84 8-81 (87)
38 3a9j_A Ubiquitin; protein comp 99.8 1.3E-19 4.4E-24 106.9 10.2 73 1-83 1-73 (76)
39 1sif_A Ubiquitin; hydrophobic 99.8 9.7E-20 3.3E-24 112.1 9.2 72 2-83 11-82 (88)
40 1x1m_A Ubiquitin-like protein 99.8 1.5E-19 5E-24 115.1 9.7 80 1-89 13-105 (107)
41 3vdz_A Ubiquitin-40S ribosomal 99.8 1.5E-19 5.2E-24 115.8 9.3 73 1-83 36-108 (111)
42 1yqb_A Ubiquilin 3; structural 99.8 1.2E-19 4E-24 114.5 8.3 75 1-86 23-97 (100)
43 1wx8_A Riken cDNA 4931431F19; 99.8 6.1E-20 2.1E-24 114.1 6.7 74 1-85 18-91 (96)
44 1v2y_A 3300001G02RIK protein; 99.8 3.3E-20 1.1E-24 118.9 5.5 74 1-84 8-97 (105)
45 2klc_A Ubiquilin-1; ubiquitin- 99.8 3E-19 1E-23 112.8 9.8 72 1-83 26-97 (101)
46 3m63_B Ubiquitin domain-contai 99.8 3E-20 1E-24 117.6 4.8 72 1-83 29-100 (101)
47 1yx5_B Ubiquitin; proteasome, 99.8 7.1E-19 2.4E-23 109.7 10.8 74 1-84 1-74 (98)
48 2l7r_A Ubiquitin-like protein 99.8 2.1E-19 7E-24 111.8 7.9 71 1-83 20-90 (93)
49 4ajy_B Transcription elongatio 99.8 2E-19 7E-24 117.4 8.1 71 5-83 5-81 (118)
50 2fnj_B Transcription elongatio 99.8 1.4E-19 4.9E-24 118.1 7.3 73 3-83 3-81 (118)
51 3rt3_B Ubiquitin-like protein 99.8 4.6E-19 1.6E-23 118.3 9.8 74 1-84 82-155 (159)
52 3l0w_B Monoubiquitinated proli 99.8 6.8E-19 2.3E-23 120.2 10.7 74 1-84 1-74 (169)
53 1j8c_A Ubiquitin-like protein 99.8 4.7E-19 1.6E-23 116.0 9.3 73 1-84 33-105 (125)
54 2kdi_A Ubiquitin, vacuolar pro 99.8 1.1E-18 3.6E-23 112.5 10.5 73 2-84 11-83 (114)
55 1v5o_A 1700011N24RIK protein; 99.8 4.1E-19 1.4E-23 112.1 8.3 73 2-84 9-86 (102)
56 1wx7_A Ubiquilin 3; ubiquitin- 99.8 4.9E-19 1.7E-23 112.2 8.6 73 1-84 18-90 (106)
57 1wxv_A BAG-family molecular ch 99.8 7.4E-19 2.5E-23 108.5 9.1 77 1-88 8-90 (92)
58 3b1l_X E3 ubiquitin-protein li 99.7 1E-20 3.5E-25 112.5 0.0 73 2-84 2-74 (76)
59 2ojr_A Ubiquitin; lanthide-bin 99.8 1.4E-18 4.8E-23 111.1 9.7 73 1-83 36-108 (111)
60 1we6_A Splicing factor, putati 99.8 8.2E-19 2.8E-23 112.1 8.5 75 1-85 28-106 (111)
61 4dbg_A Ranbp-type and C3HC4-ty 99.8 1.3E-18 4.5E-23 111.5 9.3 72 2-83 26-100 (105)
62 2kd0_A LRR repeats and ubiquit 99.8 1.4E-18 4.9E-23 106.5 8.8 71 3-83 14-84 (85)
63 3rt3_B Ubiquitin-like protein 99.8 2.5E-18 8.6E-23 114.7 10.3 73 1-83 3-77 (159)
64 1we7_A SF3A1 protein; structur 99.8 2.4E-18 8.1E-23 110.6 9.5 75 1-85 26-110 (115)
65 3q3f_A Ribonuclease/ubiquitin 99.8 1.3E-18 4.5E-23 121.2 8.0 74 1-84 106-179 (189)
66 3u30_A Ubiquitin, linear DI-ub 99.8 3.6E-18 1.2E-22 115.7 9.6 74 1-84 21-94 (172)
67 4b6w_A Tubulin-specific chaper 99.8 3.1E-18 1.1E-22 105.8 8.0 65 9-83 13-84 (86)
68 1wgg_A Ubiquitin carboxyl-term 99.8 3.1E-18 1.1E-22 107.4 7.6 72 1-84 8-80 (96)
69 1v5t_A 8430435I17RIK protein; 99.7 4.3E-18 1.5E-22 105.2 7.9 73 1-84 8-84 (90)
70 3u30_A Ubiquitin, linear DI-ub 99.7 4.8E-18 1.6E-22 115.0 8.1 72 2-83 98-169 (172)
71 3u5e_m 60S ribosomal protein L 99.7 1.1E-19 3.8E-24 118.8 0.0 74 1-84 1-74 (128)
72 3b08_A Polyubiquitin-C, ubiqui 99.7 1.3E-17 4.6E-22 109.4 9.9 73 2-84 78-150 (152)
73 3b08_A Polyubiquitin-C, ubiqui 99.7 3.2E-17 1.1E-21 107.5 10.4 73 2-84 2-74 (152)
74 1v86_A DNA segment, CHR 7, way 99.7 4.3E-18 1.5E-22 106.4 5.7 72 1-84 18-89 (95)
75 3u5c_f 40S ribosomal protein S 99.7 3E-19 1E-23 120.6 0.0 74 1-84 1-74 (152)
76 1oqy_A HHR23A, UV excision rep 99.7 1.8E-17 6.2E-22 125.0 9.5 78 1-84 8-85 (368)
77 2kjr_A CG11242; UBL, ubiquitin 99.7 3.5E-17 1.2E-21 102.8 8.0 70 1-80 16-93 (95)
78 3ai5_A Yeast enhanced green fl 99.7 8.6E-17 2.9E-21 119.0 8.8 73 1-83 234-306 (307)
79 2dzm_A FAS-associated factor 1 99.7 6.6E-17 2.3E-21 102.6 6.8 71 6-87 14-86 (100)
80 2kj6_A Tubulin folding cofacto 99.7 1.3E-16 4.6E-21 100.5 7.3 71 1-81 15-94 (97)
81 2dzj_A Synaptic glycoprotein S 99.7 1.3E-16 4.5E-21 98.7 7.0 69 2-79 12-85 (88)
82 2xzm_9 RPS31E; ribosome, trans 99.6 1.4E-17 4.6E-22 116.2 0.0 68 2-84 2-69 (189)
83 1v6e_A Cytoskeleton-associated 99.6 8.1E-16 2.8E-20 95.8 7.5 71 1-81 8-86 (95)
84 1wf9_A NPL4 family protein; be 99.6 1.1E-15 3.8E-20 97.2 6.6 72 2-84 9-96 (107)
85 2io1_B Small ubiquitin-related 99.6 5.9E-15 2E-19 92.4 8.3 73 1-83 8-80 (94)
86 1t0y_A Tubulin folding cofacto 99.6 7.9E-15 2.7E-19 95.2 8.6 72 1-82 7-86 (122)
87 3shq_A UBLCP1; phosphatase, hy 99.5 5.1E-15 1.8E-19 109.7 6.0 72 1-83 6-80 (320)
88 1wm3_A Ubiquitin-like protein 99.5 4.3E-14 1.5E-18 84.1 8.0 70 1-80 2-71 (72)
89 2kzr_A Ubiquitin thioesterase 99.5 1.4E-14 4.7E-19 88.6 5.9 72 1-83 1-78 (86)
90 2io0_B Small ubiquitin-related 99.5 6.7E-14 2.3E-18 87.2 8.7 74 1-84 6-79 (91)
91 2d07_B Ubiquitin-like protein 99.5 1.9E-13 6.4E-18 85.2 8.4 73 1-83 18-90 (93)
92 3a4r_A Nfatc2-interacting prot 99.5 4E-13 1.4E-17 81.4 8.2 69 1-79 8-77 (79)
93 1wz0_A Ubiquitin-like protein 99.4 2.7E-13 9.2E-18 86.4 7.0 73 1-83 25-97 (104)
94 2eke_C Ubiquitin-like protein 99.4 9.9E-13 3.4E-17 84.1 7.8 72 1-83 32-103 (106)
95 2k8h_A Small ubiquitin protein 99.4 3.6E-13 1.2E-17 86.6 5.6 73 1-83 27-99 (110)
96 1wjn_A Tubulin-folding protein 99.3 8.8E-12 3E-16 77.5 8.8 72 1-82 10-92 (97)
97 3kyd_D Small ubiquitin-related 99.1 2.7E-10 9.4E-15 73.8 8.8 73 1-83 41-113 (115)
98 3pge_A SUMO-modified prolifera 99.0 1.2E-09 4.1E-14 76.6 8.3 73 1-84 30-102 (200)
99 3tix_A Ubiquitin-like protein 98.9 4.4E-09 1.5E-13 73.8 6.4 72 1-83 58-129 (207)
100 4efo_A Serine/threonine-protei 98.6 1.7E-07 6E-12 58.6 7.4 67 9-84 22-90 (94)
101 3v7o_A Minor nucleoprotein VP3 98.6 7.3E-09 2.5E-13 73.5 0.0 72 1-83 22-93 (227)
102 2pjh_A Protein NPL4, nuclear p 98.5 6.5E-08 2.2E-12 58.5 3.4 64 2-74 6-74 (80)
103 2jxx_A Nfatc2-interacting prot 98.4 1E-06 3.6E-11 55.2 7.5 67 1-75 26-93 (97)
104 3goe_A DNA repair protein RAD6 98.4 1.6E-06 5.3E-11 52.8 7.8 70 1-80 10-80 (82)
105 3uf8_A Ubiquitin-like protein 98.4 8.5E-07 2.9E-11 61.9 6.4 72 1-83 22-93 (209)
106 3qx1_A FAS-associated factor 1 98.3 5.3E-06 1.8E-10 50.0 7.5 67 2-79 9-80 (84)
107 2bps_A YUKD protein; ubiquitin 98.3 2.7E-06 9.3E-11 51.8 6.1 72 1-75 5-78 (81)
108 3ix6_A TS, tsase, thymidylate 98.2 1.5E-07 5E-12 71.0 0.0 72 1-83 22-93 (360)
109 2l76_A Nfatc2-interacting prot 98.1 2.3E-05 7.8E-10 49.0 7.7 70 1-79 22-91 (95)
110 4da1_A Protein phosphatase 1K, 98.0 7.2E-07 2.5E-11 66.7 0.0 71 1-82 31-101 (389)
111 2kc2_A Talin-1, F1; FERM, adhe 97.9 9.7E-06 3.3E-10 53.2 4.0 73 2-74 13-116 (128)
112 2dzk_A UBX domain-containing p 97.9 0.00023 7.8E-09 45.0 10.0 71 2-82 15-90 (109)
113 1wj4_A KIAA0794 protein; UBX d 97.8 6.2E-05 2.1E-09 48.7 6.9 67 2-79 45-116 (124)
114 1s3s_G P47 protein; AAA ATPase 97.8 0.00012 4.1E-09 47.5 7.7 63 2-71 54-119 (127)
115 2cr5_A Reproduction 8; UBX dom 97.7 0.00031 1.1E-08 44.3 8.3 70 1-81 24-97 (109)
116 3ivf_A Talin-1; FERM domain, c 97.3 0.0017 5.8E-08 47.8 9.5 68 1-73 4-77 (371)
117 4e71_A Plexin-B2, MM1; transme 96.8 0.0039 1.3E-07 39.8 6.3 67 10-80 23-108 (111)
118 3h6n_A Plexin-D1; structural g 96.7 0.017 5.7E-07 37.7 8.6 70 10-83 16-105 (127)
119 2al3_A TUG long isoform; TUG U 96.7 0.015 5E-07 35.9 7.8 76 2-87 11-86 (90)
120 2r2o_A Plexin-B1; effector dom 96.5 0.018 6.1E-07 38.0 7.9 69 11-83 41-129 (138)
121 4e74_A Plexin-A4; RBD, structu 95.3 0.077 2.6E-06 34.0 6.7 69 11-83 27-115 (117)
122 3jyu_A Ubiquitin carboxyl-term 94.5 0.33 1.1E-05 33.8 8.9 55 12-74 153-214 (231)
123 4a3p_A Ubiquitin carboxyl-term 94.3 0.3 1E-05 33.7 8.1 57 12-76 141-204 (217)
124 3hm6_X Plexin-B1; structural g 93.5 0.42 1.4E-05 38.4 8.4 69 11-83 274-362 (644)
125 1wgr_A Growth factor receptor- 92.5 0.33 1.1E-05 30.1 5.4 59 2-67 11-75 (100)
126 1ef1_A Moesin; membrane, FERM 92.4 1.2 4.1E-05 31.2 9.0 74 1-82 2-80 (294)
127 3kuz_A Plexin-C1; structural g 92.4 0.68 2.3E-05 30.0 6.9 63 11-79 39-123 (126)
128 1y8x_B Ubiquitin-activating en 91.6 0.096 3.3E-06 32.5 2.1 66 11-79 5-81 (98)
129 1h4r_A Merlin; FERM, neurofibr 91.4 1.6 5.6E-05 30.9 8.8 74 1-82 23-100 (314)
130 3ig3_A Plxna3 protein; plexin 91.3 1.5 5.2E-05 35.1 9.1 69 11-83 247-335 (627)
131 2v1y_A Phosphatidylinositol-4, 90.8 0.36 1.2E-05 30.4 4.3 33 1-33 20-52 (108)
132 2i1j_A Moesin; FERM, coiled-co 90.4 2 6.9E-05 33.7 9.1 74 1-82 5-83 (575)
133 3onh_A Ubiquitin-activating en 88.8 0.59 2E-05 30.3 4.1 63 12-76 7-75 (127)
134 3ge3_C Toluene-4-monooxygenase 88.7 2.4 8.1E-05 25.6 6.5 59 12-73 16-76 (84)
135 1oey_A P67-PHOX, neutrophil cy 88.6 1.5 5.1E-05 26.3 5.6 38 11-56 14-51 (83)
136 1ip9_A BEM1 protein; ubiquitin 86.5 2.5 8.5E-05 25.5 5.7 30 4-33 14-44 (85)
137 3qij_A Protein 4.1; cytoskelet 85.1 1.5 5.2E-05 31.1 5.0 73 1-82 18-95 (296)
138 3po0_A Small archaeal modifier 84.7 4.1 0.00014 23.5 6.3 59 9-74 15-79 (89)
139 3ivf_A Talin-1; FERM domain, c 84.3 8.5 0.00029 27.9 8.8 70 2-80 87-165 (371)
140 2y3a_A Phosphatidylinositol-4, 84.0 7.1 0.00024 33.1 9.2 78 1-84 52-138 (1092)
141 2juo_A GA-binding protein alph 83.9 3.8 0.00013 24.9 5.6 63 13-83 5-67 (89)
142 2inc_C TOUB protein; DIIRON, 4 83.3 5.5 0.00019 23.9 8.3 59 12-73 14-75 (83)
143 4eut_A Serine/threonine-protei 81.3 6.9 0.00024 28.0 7.3 52 11-70 322-375 (396)
144 2l32_A Small archaeal modifier 79.6 5.1 0.00017 23.0 5.0 49 2-62 2-50 (74)
145 1ryj_A Unknown; beta/alpha pro 75.0 8.7 0.0003 21.4 6.0 51 7-74 8-60 (70)
146 2q5w_D Molybdopterin convertin 73.8 4 0.00014 22.8 3.5 52 11-74 16-67 (77)
147 3au4_A Myosin-X; protein-prote 73.4 5.3 0.00018 30.6 5.0 33 1-33 217-249 (555)
148 3lxf_A Ferredoxin; iron, iron- 72.6 5.3 0.00018 24.0 4.0 53 2-55 2-55 (104)
149 1fm0_D Molybdopterin convertin 72.1 4 0.00014 23.0 3.2 58 11-79 17-74 (81)
150 1vjk_A Molybdopterin convertin 71.1 13 0.00046 21.8 7.5 58 11-74 27-88 (98)
151 2qjl_A URM1, ubiquitin-related 70.2 7.1 0.00024 23.2 4.1 28 11-38 20-49 (99)
152 1vd2_A Protein kinase C, IOTA 70.1 15 0.00051 22.0 7.3 46 3-56 7-54 (89)
153 2kvr_A Ubiquitin carboxyl-term 69.9 4.4 0.00015 25.9 3.2 35 12-54 57-91 (130)
154 3hhm_A Phosphatidylinositol-4, 69.2 5.1 0.00017 34.0 4.3 78 1-84 43-129 (1091)
155 3pvl_A Myosin VIIA isoform 1; 68.1 7.9 0.00027 30.8 5.0 33 1-33 264-296 (655)
156 4gmv_A RAS-associated and plec 66.2 8.6 0.00029 27.6 4.5 32 2-33 33-64 (281)
157 2kmm_A Guanosine-3',5'-BIS(dip 66.0 14 0.00048 20.1 4.9 29 2-32 2-30 (73)
158 3hk0_A Growth factor receptor- 64.2 13 0.00043 26.3 5.0 31 3-33 11-41 (256)
159 1uwm_A Ferredoxin VI, FDVI; el 63.7 12 0.0004 22.2 4.2 54 1-55 1-55 (106)
160 2bt6_A Adrenodoxin 1; rutheniu 63.7 8 0.00027 23.1 3.4 51 2-52 8-60 (108)
161 2y5c_A Adrenodoxin-like protei 61.7 9.1 0.00031 22.9 3.4 53 2-55 7-59 (109)
162 3qa8_A MGC80376 protein; kinas 61.7 7.7 0.00026 31.0 3.8 52 9-68 320-372 (676)
163 2wlb_A ETP1-FD, electron trans 61.5 12 0.00042 22.0 4.0 53 2-55 5-57 (103)
164 1xlq_A Putidaredoxin, PDX; [2F 59.7 14 0.00048 21.9 4.0 53 2-55 2-55 (106)
165 3hui_A Ferredoxin; cytochrome 57.2 11 0.00039 23.6 3.4 53 2-55 23-76 (126)
166 4dxa_B KREV interaction trappe 56.8 8.5 0.00029 27.4 3.0 29 1-29 6-36 (322)
167 4eku_A Protein-tyrosine kinase 56.3 22 0.00076 26.4 5.4 60 3-67 24-97 (392)
168 3tca_A Amyloid beta A4 precurs 55.1 17 0.00057 24.8 4.3 31 3-33 37-67 (291)
169 4a6q_A Histone deacetylase com 55.0 13 0.00045 24.3 3.5 65 17-83 60-139 (143)
170 1rm6_C 4-hydroxybenzoyl-COA re 54.9 12 0.00042 24.4 3.4 27 3-30 5-31 (161)
171 1wgk_A Riken cDNA 2900073H19 p 53.8 12 0.00039 23.2 3.0 26 12-37 31-59 (114)
172 1ffv_A CUTS, iron-sulfur prote 52.8 18 0.0006 23.9 3.9 26 3-29 6-31 (163)
173 1n62_A Carbon monoxide dehydro 52.1 18 0.00062 23.8 3.9 26 3-29 6-31 (166)
174 1tyg_B YJBS; alpha beta barrel 51.3 35 0.0012 20.0 5.2 53 7-74 24-77 (87)
175 2daj_A KIAA0977 protein, COBL- 50.2 40 0.0014 20.4 6.8 54 9-70 19-75 (91)
176 1b9r_A Protein (terpredoxin); 49.5 9.4 0.00032 22.6 2.0 54 1-55 1-55 (105)
177 3dwg_C 9.5 kDa culture filtrat 49.1 4.8 0.00017 23.5 0.6 63 9-74 15-83 (93)
178 2cu3_A Unknown function protei 49.1 21 0.00072 19.3 3.3 52 7-74 3-54 (64)
179 2ylm_A Ubiquitin carboxyl-term 46.6 16 0.00056 28.2 3.4 34 13-54 38-71 (530)
180 3hrd_D Nicotinate dehydrogenas 46.5 24 0.00082 23.2 3.8 24 3-27 6-29 (160)
181 1f0z_A THis protein; ubiquitin 46.5 34 0.0012 18.5 4.8 53 7-74 4-56 (66)
182 2al6_A Focal adhesion kinase 1 46.4 16 0.00055 26.6 3.2 57 3-66 10-76 (375)
183 1rws_A Hypothetical protein PF 44.8 11 0.00037 21.4 1.6 45 13-74 23-67 (77)
184 1jq4_A Methane monooxygenase c 42.7 26 0.00091 20.3 3.2 54 2-57 6-59 (98)
185 2ylm_A Ubiquitin carboxyl-term 42.6 83 0.0029 24.2 6.8 51 12-67 353-408 (530)
186 3n9z_C Adrenodoxin; cytochrome 41.2 5.6 0.00019 24.9 0.0 53 1-53 6-60 (123)
187 1t3q_A Quinoline 2-oxidoreduct 41.1 33 0.0011 22.3 3.8 23 7-29 15-37 (168)
188 1q1o_A Cell division control p 37.9 63 0.0021 19.6 4.4 24 10-33 22-45 (98)
189 2g1e_A Hypothetical protein TA 36.2 37 0.0013 19.1 3.1 61 14-79 18-83 (90)
190 3he4_B Synzip5; heterodimeric 36.0 21 0.00073 18.4 1.7 14 20-33 2-15 (46)
191 4gdk_A Ubiquitin-like protein 34.3 73 0.0025 18.8 4.9 68 2-79 7-84 (91)
192 2c7h_A RBBP6, retinoblastoma-b 33.9 66 0.0023 19.1 4.0 31 3-33 9-41 (86)
193 2jx5_A GLUB(S27A); ubiquitin, 33.1 66 0.0022 17.9 6.9 50 3-64 2-51 (69)
194 2kl0_A Putative thiamin biosyn 32.4 60 0.0021 18.1 3.6 52 7-74 4-55 (73)
195 3w1s_C Ubiquitin-like protein 32.1 82 0.0028 18.7 4.8 56 2-67 10-70 (91)
196 2dhz_A RAP guanine nucleotide 31.6 77 0.0026 20.0 4.2 73 4-82 13-92 (120)
197 3rpf_C Molybdopterin convertin 31.2 68 0.0023 17.5 5.2 61 3-74 3-64 (74)
198 3eud_A Protein SHQ1; CS domain 31.1 43 0.0015 21.1 2.9 35 44-79 58-92 (115)
199 3ah7_A [2Fe-2S]ferredoxin; [2F 30.4 49 0.0017 19.6 3.1 54 2-56 3-59 (113)
200 2k5p_A THis protein, thiamine- 29.3 79 0.0027 17.9 3.8 54 7-74 4-59 (78)
201 2k9x_A Tburm1, uncharacterized 26.1 18 0.0006 22.3 0.4 29 9-37 19-51 (110)
202 1l5p_A Ferredoxin; [2Fe-2S] cl 25.9 64 0.0022 18.4 3.0 54 2-57 2-56 (93)
203 2lkw_A Membrane fusion protein 25.8 25 0.00086 16.1 0.8 12 78-89 5-16 (26)
204 2nyg_A YOKD protein; PFAM02522 25.5 23 0.00078 25.2 1.0 21 63-83 21-41 (273)
205 1wgy_A RAP guanine nucleotide 25.0 1.2E+02 0.004 18.6 4.1 32 2-33 11-42 (104)
206 1i7h_A Ferredoxin; 2Fe-2S,elec 24.8 72 0.0025 18.8 3.1 54 2-56 3-59 (111)
207 3sma_A FRBF; N-acetyl transfer 24.3 28 0.00096 25.1 1.3 22 62-83 29-50 (286)
208 1wri_A Ferredoxin II, ferredox 24.2 1.1E+02 0.0036 17.4 8.1 60 2-65 3-63 (93)
209 3ijw_A Aminoglycoside N3-acety 23.7 24 0.00083 25.1 0.9 21 63-83 23-43 (268)
210 2nvu_B Maltose binding protein 21.9 1.8E+02 0.0061 23.1 5.7 62 12-74 713-785 (805)
211 3hvz_A Uncharacterized protein 21.3 1.2E+02 0.0043 17.2 4.5 29 2-32 7-35 (78)
212 2r2q_A Gamma-aminobutyric acid 20.6 1.3E+02 0.0046 18.1 3.8 45 14-67 47-93 (110)
213 3ra3_A P1C; coiled coil domain 20.4 58 0.002 15.1 1.5 12 21-32 14-25 (28)
No 1
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.97 E-value=8.2e-31 Score=170.96 Aligned_cols=91 Identities=79% Similarity=1.238 Sum_probs=84.1
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|+||+++|++++++|++++||++||++|++.||.+|.+..++++++|||||+||+|+|+.||++|+|+.++.+|||||
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 57999999999999999999999999999999999999533335799999999999999999999999998888999999
Q ss_pred ecCCCCCCCCC
Q psy5872 81 PRENLPEPNSQ 91 (91)
Q Consensus 81 ~~~~~p~~~~~ 91 (91)
+|...|++++|
T Consensus 97 lr~~~~~~~~~ 107 (116)
T 1wgh_A 97 ARETLPEPNSQ 107 (116)
T ss_dssp ECSSCSSSCCS
T ss_pred ccCCCCCCCcc
Confidence 99999999875
No 2
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=167.24 Aligned_cols=89 Identities=80% Similarity=1.246 Sum_probs=82.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccc-cCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEA-VAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~-~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
|+|+||+++|++++++|++++||++||++|++.||.+|. ++ +.++++|||||+||+|+|+.||++|+|+.++.+||||
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwk-e~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhl 96 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWE-EEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHL 96 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCC-CCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccc-cCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEE
Confidence 579999999999999999999999999999999999984 44 2369999999999999999999999999999999999
Q ss_pred EecCCCCCCCC
Q psy5872 80 VPRENLPEPNS 90 (91)
Q Consensus 80 v~~~~~p~~~~ 90 (91)
|+|.+.|++++
T Consensus 97 v~r~~~~~~~~ 107 (125)
T 2gow_A 97 VARETLPEPNS 107 (125)
T ss_dssp EECSCCSSSSS
T ss_pred EecCCCCcccc
Confidence 99999887764
No 3
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.95 E-value=3.1e-27 Score=156.03 Aligned_cols=85 Identities=20% Similarity=0.395 Sum_probs=76.3
Q ss_pred CEEEEEecCCCEE-EEEeCCCCcHHHHHHHHhhcCCCCCcccccCCC--CcEEEEEcCeecCCCCcccccCCCCCCc---
Q psy5872 1 INLRLILVSGKTK-EFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKA--DILRLIYQGRFLHSNVTLGALGLTCSKT--- 74 (91)
Q Consensus 1 i~l~~~~~~g~~~-~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~--~~qrLI~~Gk~L~D~~tL~~~~i~~~~~--- 74 (91)
++|+||+++|+.+ ++++++++||++||++|++.||+++ ++ +|+ ++|||||+||+|+|+.||++|+|+.|++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dk--eg-iP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREK--EN-GPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTC--SS-SCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhccccc--cc-CCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 4799999999877 7999999999999999999999884 55 554 8999999999999999999999998876
Q ss_pred -EEEEEEecCCCCCC
Q psy5872 75 -TVMHLVPRENLPEP 88 (91)
Q Consensus 75 -~tvhlv~~~~~p~~ 88 (91)
+|||||++.+.+++
T Consensus 94 v~tmhlVlrl~g~~k 108 (126)
T 1se9_A 94 VTTMHVIIQAPVTEK 108 (126)
T ss_dssp CEEEEEEECCCSSCC
T ss_pred cEEEEEEeccCCccc
Confidence 89999999876654
No 4
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.6e-22 Score=125.53 Aligned_cols=75 Identities=24% Similarity=0.434 Sum_probs=66.4
Q ss_pred CEEEEEecCCCEEEEEeC--CCCcHHHHHHHH-hhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCC-CCCCcEE
Q psy5872 1 INLRLILVSGKTKEFLFS--PSDSAGDIAQHV-FDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGL-TCSKTTV 76 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~--~~~TV~~lK~~I-~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i-~~~~~~t 76 (91)
+.|+||+++|++++++++ +++||++||++| ++. +| +|+++|||||+||+|+|+.||++|+| ++| ++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~-------~g-ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~--st 71 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEE-------KA-SHISEIKLLLKGKVLHDNLFLSDLKVTPAN--ST 71 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTT-------SC-SSSTTEEEEETTEECCTTCBHHHHCCCGGG--CE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHh-------cC-CChHHEEEEECCEECcCcCCHHHcCCCCCC--CE
Confidence 579999999999988755 999999999999 663 45 99999999999999999999999999 445 47
Q ss_pred EEEEecCCC
Q psy5872 77 MHLVPRENL 85 (91)
Q Consensus 77 vhlv~~~~~ 85 (91)
+||+.+++.
T Consensus 72 l~v~~~~~~ 80 (87)
T 2lxa_A 72 ITVMIKPNL 80 (87)
T ss_dssp EEEEECCCC
T ss_pred EEEEcCCCc
Confidence 999999875
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.87 E-value=6.6e-22 Score=118.73 Aligned_cols=73 Identities=18% Similarity=0.333 Sum_probs=67.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
+.|.+|+.+|+++.+++++++||++||++|++. ++ +|+++|||+|+|+.|+|+.||++|||++|+ ++|++
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-------~g-ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~--~l~l~ 74 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-------EG-VQDDLFWLTFEGKPLEDQLPLGEYGLKPLS--TVFMN 74 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-------HT-CCGGGEEEEETTEECCTTSBGGGGTCCTTC--EEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhh-------cC-CCHHHEEEEECCEECCCCCcHHHCCCCCCC--EEEEE
Confidence 368999999999999999999999999999995 44 999999999999999999999999999776 79998
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
+|-
T Consensus 75 ~rl 77 (79)
T 3phx_B 75 LRL 77 (79)
T ss_dssp ECC
T ss_pred Eec
Confidence 874
No 6
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.87 E-value=4.4e-22 Score=125.35 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=65.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|.+++.+|+++.++++|++||++||++|+++ +| +|+++|||||+||+|+|+.||++|+|++|+ ++||.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k-------~G-ip~~qQrLif~Gk~LkD~~TL~dY~I~dgs--tLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQ-------IG-TQPNKIVLQKGGSVLKDHISLEDYEVHDQT--NLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHH-------HT-CCGGGEEEEETTEECCTTSBTGGGTCCTTC--EEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHH-------hC-CCHHHEEEEeCCEEccCcCCHHHcCCCCCC--EEEEE
Confidence 578999999999999999999999999999995 56 999999999999999999999999999776 68874
No 7
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=5e-22 Score=126.49 Aligned_cols=75 Identities=15% Similarity=0.274 Sum_probs=67.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|+||+++|+++.+++++++||++||++|++. .+ +++++|||||+||.|+|+.||++|||++|+ +|||+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~--~i~lv 71 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQS-------IS-CEESQIKLIYSGKVLQDSKTVSECGLKDGD--QVVFM 71 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHT-------TT-SCGGGCEEEETTEECCTTSBTTTTTCCTTC--EEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-------HC-CChhhEEEEECCEECCCcCCHHHcCCCCCC--EEEEE
Confidence 478999999999999999999999999999996 34 899999999999999999999999999776 79999
Q ss_pred ecCCC
Q psy5872 81 PRENL 85 (91)
Q Consensus 81 ~~~~~ 85 (91)
++.+.
T Consensus 72 ~~~~~ 76 (106)
T 3m62_B 72 VSQKK 76 (106)
T ss_dssp CCC--
T ss_pred EcCCC
Confidence 87654
No 8
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.86 E-value=1.2e-21 Score=120.34 Aligned_cols=74 Identities=23% Similarity=0.424 Sum_probs=67.3
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++|+++|+++.+++++++||++||++|++. .+ +++++|||||+||.|+|+.||++||| +| .+|||+
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-------~g-ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g--~~i~l~ 74 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAAS-------VS-IPSEKQRLIYQGRVLQDDKKLQEYNV-GG--KVIHLV 74 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHH-------HT-CCGGGEEEEETTEECCTTSBGGGGTC-TT--EEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH-------hC-CCHHHEEEEECCeECCCCCCHHHcCC-CC--cEEEEE
Confidence 478999999999999999999999999999996 44 89999999999999999999999999 55 489999
Q ss_pred ecCCC
Q psy5872 81 PRENL 85 (91)
Q Consensus 81 ~~~~~ 85 (91)
++...
T Consensus 75 ~~~~~ 79 (90)
T 4dwf_A 75 ERAPP 79 (90)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98653
No 9
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.86 E-value=2.3e-21 Score=117.45 Aligned_cols=77 Identities=13% Similarity=0.245 Sum_probs=66.7
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++|+.+|+++.+++++++||++||++|++.++ .++ +++++|||+|+|+.|+|+.||++|||++|+ ++|++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~----~~g-ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~--~i~l~ 78 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKG----RDA-FPVAGQKLIYAGKILSDDVPIRDYRIDEKN--FVVVM 78 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHC----TTT-CCGGGEEEEETTEECCTTSBGGGGCCCTTS--EEEEE
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhcc----ccC-CCHHHeEEEECCEECcCCCCHHHcCCCCCC--EEEEE
Confidence 46899999999999999999999999999999532 023 899999999999999999999999999775 78998
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
.+++
T Consensus 79 ~~~~ 82 (85)
T 2wyq_A 79 VTKT 82 (85)
T ss_dssp EC--
T ss_pred EcCC
Confidence 8764
No 10
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=6e-21 Score=118.95 Aligned_cols=80 Identities=13% Similarity=0.216 Sum_probs=68.9
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
..|++|+.+|+.+.+++++++||++||++|++.++ .++ +++++|||+|+||.|+|+.||++|||++|+ +|||+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~----~~g-ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~--~i~l~ 73 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKG----KDA-FPVAGQKLIYAGKILNDDTALKEYKIDEKN--FVVVM 73 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHC----TTT-CCTTTEEEEETTEECCTTSBGGGGTCCSSS--EEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcc----cCC-CChhhEEEEECCEECCCcCcHHHCCCCCCC--EEEEE
Confidence 46899999999999999999999999999999632 023 899999999999999999999999999776 68888
Q ss_pred ecCCCCC
Q psy5872 81 PRENLPE 87 (91)
Q Consensus 81 ~~~~~p~ 87 (91)
++...+.
T Consensus 74 ~~~~~~~ 80 (95)
T 1uel_A 74 VTKPKAV 80 (95)
T ss_dssp ESSCCCC
T ss_pred EeCCCCC
Confidence 8764433
No 11
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=2.9e-21 Score=119.73 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=70.2
Q ss_pred CEEEEEecCCC--EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCccccc--CCCCCCcEE
Q psy5872 1 INLRLILVSGK--TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGAL--GLTCSKTTV 76 (91)
Q Consensus 1 i~l~~~~~~g~--~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~--~i~~~~~~t 76 (91)
+.|+||+.+|+ .+.+++++++||++||++|++.+|. + +++++|||||+||.|+|+.||++| +|+++ .+
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~-----~-i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~--~~ 79 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPE-----R-PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKR--HV 79 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTT-----C-CCTTTCEEEETTEECCSSSCHHHHSCSSSCS--EE
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcC-----C-CChHHeEEEECCEECcCcCCHHHHhcCCCCC--CE
Confidence 57999999998 7788888999999999999997542 2 899999999999999999999999 99855 58
Q ss_pred EEEEecCCCCCCC
Q psy5872 77 MHLVPRENLPEPN 89 (91)
Q Consensus 77 vhlv~~~~~p~~~ 89 (91)
|||+++.....|.
T Consensus 80 i~lv~~~~gg~~~ 92 (93)
T 1wgd_A 80 LHLVCNVKSGPSS 92 (93)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999988765543
No 12
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.86 E-value=1.7e-21 Score=119.57 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=66.6
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCee-cCCCCcccccCCCCCCcEEEEEE
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRF-LHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~-L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
+|++++++|+++++++++++||++||++|++. ++ +|+++|||+|+||. |+|+.||++|||++|+ ++||+
T Consensus 12 ~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs--~i~lv 81 (84)
T 2kk8_A 12 KFLVENLNGSSFELEVDYRDTLLVVKQKIERS-------QH-IPVSKQTLIVDGIVILREDLTVEQCQIVPTS--DIQLE 81 (84)
T ss_dssp EEEEEETTSCEEEEEECTTSBHHHHHHHHHHH-------HT-CCGGGEEEEETTEECCCSSSBHHHHTCCTTS--CEEEE
T ss_pred EEEEEecCCcEEEEEECCCChHHHHHHHHHHH-------HC-cChHHEEEEECCEEecCCcCCHHHcCCCCCC--EEEEE
Confidence 68899999999999999999999999999996 45 99999999999999 9999999999999776 68998
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++|
T Consensus 82 ~~p 84 (84)
T 2kk8_A 82 VSS 84 (84)
T ss_dssp ECC
T ss_pred EcC
Confidence 875
No 13
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=1.3e-21 Score=124.62 Aligned_cols=65 Identities=8% Similarity=0.171 Sum_probs=59.2
Q ss_pred EEEEEecC----CCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 2 NLRLILVS----GKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 2 ~l~~~~~~----g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
.|+++..+ |+++++++++++||++||++|++. ++ +|+++|||||+||+|+|+.||++|+|++|.+
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k-------~g-ip~~qQrLI~~GKiL~D~~TL~~y~I~~gst 85 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAET-------FG-LQENYIKIVINKKQLQLGKTLEEQGVAHNVK 85 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHH-------TT-CCSTTCEEEETTEECCTTSBHHHHTCCSSEE
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHH-------HC-cCHHHeEEEeCCeECCCCCcHHHcCCCCCCE
Confidence 46778887 789999999999999999999996 55 8999999999999999999999999997764
No 14
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.86 E-value=2.2e-21 Score=118.68 Aligned_cols=71 Identities=24% Similarity=0.457 Sum_probs=65.2
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++|+.+|+++.+++++++||++||++|++. .+ +|+++|||+|+||.|+|+.||++||| +| .++||+
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-------~g-ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g--~~i~lv 86 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAAS-------VS-IPSEKQRLIYQGRVLQDDKKLQEYNV-GG--KVIHLV 86 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHH-------HT-CCGGGEEEEETTEECCTTSBGGGGTC-TT--EEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH-------hC-CCHHHEEEEECCEECCCCCcHHHcCC-CC--cEEEEE
Confidence 468999999999999999999999999999995 44 89999999999999999999999999 55 489999
Q ss_pred ec
Q psy5872 81 PR 82 (91)
Q Consensus 81 ~~ 82 (91)
+|
T Consensus 87 ~R 88 (88)
T 4eew_A 87 ER 88 (88)
T ss_dssp EC
T ss_pred EC
Confidence 86
No 15
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.86 E-value=3.3e-21 Score=121.98 Aligned_cols=74 Identities=24% Similarity=0.421 Sum_probs=63.7
Q ss_pred CEEEEEecCCCEEEE--EeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCC-CCCCcEEE
Q psy5872 1 INLRLILVSGKTKEF--LFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGL-TCSKTTVM 77 (91)
Q Consensus 1 i~l~~~~~~g~~~~~--~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i-~~~~~~tv 77 (91)
+.|+||+++|+++++ ++++++||++||++|++.. ++ +++++|||||+||.|+|+.||++||| ++|+ +|
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~------~g-ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~--ti 90 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEE------KA-SHISEIKLLLKGKVLHDNLFLSDLKVTPANS--TI 90 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTT------SC-SCGGGEEEEETTEEECTTCBGGGSCCBTTBC--EE
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHh------cC-CChhhEEEEECCEECcCcCCHHHcCcCCCCC--EE
Confidence 479999999997776 5669999999999994431 44 89999999999999999999999999 8776 68
Q ss_pred EEEecC
Q psy5872 78 HLVPRE 83 (91)
Q Consensus 78 hlv~~~ 83 (91)
||++++
T Consensus 91 ~lmvsk 96 (98)
T 4a20_A 91 TVMIKP 96 (98)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 888776
No 16
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.86 E-value=3.7e-21 Score=118.43 Aligned_cols=74 Identities=24% Similarity=0.380 Sum_probs=67.5
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
+.|+||+.+|+++.+++++++||++||++|++. .+ +|+++|||+|+|+.|+|+.||++|||++|+ +|||+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~--~l~l~ 70 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-------EG-IPPQQQRLIYSGKQMNDEKTAADYKILGGS--VLHLV 70 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHH-------HC-CCGGGCEEEETTEECCTTSBTTTTTCCTTC--EEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH-------HC-cChhHEEEEECCeECCCCCcHHHcCCCCCC--EEEEE
Confidence 478999999999999999999999999999995 44 899999999999999999999999999776 78888
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
++..
T Consensus 71 ~rl~ 74 (88)
T 4fbj_B 71 LALR 74 (88)
T ss_dssp CBCC
T ss_pred EECC
Confidence 8754
No 17
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.85 E-value=1.8e-21 Score=123.40 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=63.5
Q ss_pred CEEEEEecCCC--EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCccccc--CCCCCCcEE
Q psy5872 1 INLRLILVSGK--TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGAL--GLTCSKTTV 76 (91)
Q Consensus 1 i~l~~~~~~g~--~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~--~i~~~~~~t 76 (91)
|+|+||+++|+ .+++++++++||++||++|++.+| +.+++++|||||+||+|+|+.||++| +|+++ .+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~------g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~--~t 95 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYP------SKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEY--HM 95 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHST------TCCCTTTCCEEETTEEECTTSBTHHHHTTTCSE--EE
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhc------CCCChhhEEEEECCEECCCCCCHHHHhcCCCCC--CE
Confidence 47899999997 679999999999999999999764 32567999999999999999999999 99854 58
Q ss_pred EEEE
Q psy5872 77 MHLV 80 (91)
Q Consensus 77 vhlv 80 (91)
||||
T Consensus 96 ihLv 99 (99)
T 2kdb_A 96 VHLV 99 (99)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 18
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.85 E-value=5e-21 Score=118.14 Aligned_cols=73 Identities=25% Similarity=0.403 Sum_probs=67.1
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++|+.+|+++.+++++++||++||++|++. .+ ++++.|||+|+|+.|+|+.||++|||++|+ +|||+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~--~i~l~ 87 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLV 87 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-------HC-CCGGGCEEEETTEECCTTCBTGGGTCCTTC--EEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhh-------hC-CChhhEEEEECCeECCCcCcHHHCCCCCCC--EEEEE
Confidence 478999999999999999999999999999995 44 999999999999999999999999999776 79998
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
+|-
T Consensus 88 ~rl 90 (91)
T 3v6c_B 88 LRL 90 (91)
T ss_dssp CCC
T ss_pred Eec
Confidence 874
No 19
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=7.4e-21 Score=113.73 Aligned_cols=73 Identities=14% Similarity=0.268 Sum_probs=66.3
Q ss_pred CEEEEEecCCCEE-EEE-eCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEE
Q psy5872 1 INLRLILVSGKTK-EFL-FSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMH 78 (91)
Q Consensus 1 i~l~~~~~~g~~~-~~~-v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvh 78 (91)
+.|.+++.+|+++ .++ +++++||++||++|++. .+ +++++|||+|+|+.|+|+.||++|||++|+ ++|
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~-------~g-ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~--~i~ 72 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQEL-------FH-VEPGLQRLFYRGKQMEDGHTLFDYEVRLND--TIQ 72 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHH-------HC-CCGGGEEEEETTEECCTTCBTTTTTCCTTC--EEE
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHH-------HC-cChhhEEEEECCEECCCCCCHHHcCCCCCC--EEE
Confidence 3688999999885 999 99999999999999995 44 899999999999999999999999999765 799
Q ss_pred EEecC
Q psy5872 79 LVPRE 83 (91)
Q Consensus 79 lv~~~ 83 (91)
+++|+
T Consensus 73 l~~r~ 77 (78)
T 2faz_A 73 LLVRQ 77 (78)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99886
No 20
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.84 E-value=1.8e-21 Score=123.98 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=65.3
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|.|++++++|+++.+++++++||++||++|++. +| +++++|||||+||+|+|+.||++|||+++ .+|||+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k-------~G-ip~~qQrLi~~Gk~L~D~~TL~dygI~~g--stlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ-------TG-TRWNKIVLKKWYTIFKDHVSLGDYEIHDG--MNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHH-------HC-CCGGGCEEEETTEECCSSCBHHHHTCCTT--EEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHH-------hC-CCHHHEEEEECCEECCCCCCHHHcCCCCC--CEEEEE
Confidence 478999999999999999999999999999996 56 99999999999999999999999999865 479986
Q ss_pred e
Q psy5872 81 P 81 (91)
Q Consensus 81 ~ 81 (91)
-
T Consensus 99 ~ 99 (100)
T 1uh6_A 99 Y 99 (100)
T ss_dssp C
T ss_pred e
Confidence 3
No 21
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=1.3e-20 Score=119.65 Aligned_cols=76 Identities=18% Similarity=0.338 Sum_probs=68.6
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
+.|++|+.+|+++.+++++++||++||++|++. .+ +++++|||+|+||.|+|+.||++|||++|+ +|||+
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~--ti~lv 93 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAA-------EG-VEPGSQRWFFSGRPLTDKMKFEELKIPKDY--VVQVI 93 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHT-------TC-CCSTTCEEEETTEECCTTSHHHHCCCSSSC--EEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-------HC-cCcccEEEEECCEECCCCCcHHHcCCCCCC--EEEEE
Confidence 468999999999999999999999999999995 44 899999999999999999999999999775 79999
Q ss_pred ecCCCC
Q psy5872 81 PRENLP 86 (91)
Q Consensus 81 ~~~~~p 86 (91)
++....
T Consensus 94 ~~~~~~ 99 (106)
T 1ttn_A 94 VSQPVQ 99 (106)
T ss_dssp CCCSSC
T ss_pred EeCCCC
Confidence 886543
No 22
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.84 E-value=1e-20 Score=115.04 Aligned_cols=73 Identities=26% Similarity=0.408 Sum_probs=66.7
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++++.+|+++.+++++++||++||++|++. .+ ++++.|||+|+|+.|+|+.||++|+|++++ ++|++
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-------~g-ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~--~i~l~ 82 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-------EG-IPPQQQRLIYSGKQMNDEKTAADYKILGGS--VLHLV 82 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-------HC-CCGGGCCEEETTEECCTTSBGGGGTCCTTC--EEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH-------HC-cCHHHEEEEECCeECCCCCcHHHcCCCCCC--EEEEE
Confidence 468999999999999999999999999999996 34 899999999999999999999999999776 79998
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++-
T Consensus 83 ~rl 85 (88)
T 3dbh_I 83 LRL 85 (88)
T ss_dssp CCC
T ss_pred EeC
Confidence 874
No 23
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=4.2e-20 Score=113.01 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=69.0
Q ss_pred CEEEEEecCC-CEEEE-EeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEE
Q psy5872 1 INLRLILVSG-KTKEF-LFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMH 78 (91)
Q Consensus 1 i~l~~~~~~g-~~~~~-~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvh 78 (91)
+.|++|+.+| +++.+ ++++++||++||++|++. .+ +++++|||+|.|+.|+|+.||++|||++|+ +||
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~-------~g-ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~--~i~ 77 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWAL-------FD-VRPECQRLFYRGKQLENGYTLFDYDVGLND--IIQ 77 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHH-------SC-CCTTTEEEEETTEECCSSSBHHHHTCCTTC--EEE
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHH-------HC-cChhhEEEEECCeECCCCCCHHHCCCCCCC--EEE
Confidence 4689999999 79999 599999999999999996 44 899999999999999999999999999765 799
Q ss_pred EEecCCCCCC
Q psy5872 79 LVPRENLPEP 88 (91)
Q Consensus 79 lv~~~~~p~~ 88 (91)
|+++...-.|
T Consensus 78 l~~~~~gG~~ 87 (89)
T 1wy8_A 78 LLVRPDSGPS 87 (89)
T ss_dssp EEECCCCSSC
T ss_pred EEEeCCCCCC
Confidence 9988765444
No 24
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.83 E-value=8.4e-21 Score=113.88 Aligned_cols=73 Identities=16% Similarity=0.302 Sum_probs=67.1
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++++.+|+++.+++++++||++||++|++. ++ +++++|||+|.|+.|+|+.||++|+|++|+ ++|++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~-------~g-i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~--~i~l~ 73 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-------QG-VPMNSLRFLFEGQRIADNHTPKELGMEEED--VIEVY 73 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHH-------HT-CCGGGEEEEETTEECCTTCCHHHHTCCTTE--EEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-------HC-CCcccEEEEECCEEeCCCCCHHHcCCCCCC--EEEEE
Confidence 478999999999999999999999999999995 45 899999999999999999999999999665 79998
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 74 ~~~ 76 (79)
T 2uyz_B 74 QEQ 76 (79)
T ss_dssp ECC
T ss_pred Eec
Confidence 875
No 25
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.7e-20 Score=117.45 Aligned_cols=73 Identities=26% Similarity=0.407 Sum_probs=67.1
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|+||+.+|+++.+++++++||++||++|++. .+ ++++.|||+|.||.|+|+.||++|||++|+ +|||+
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~--~i~l~ 92 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLV 92 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHH-------HC-CCGGGCEEEETTEECCTTCBSGGGTCCTTE--EEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-------hC-CChhHEEEEECCEECCCCCcHHHCCCCCCC--EEEEE
Confidence 578999999999999999999999999999996 34 899999999999999999999999998664 79998
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
+|-
T Consensus 93 ~rl 95 (98)
T 4hcn_B 93 LRL 95 (98)
T ss_dssp CBC
T ss_pred Eec
Confidence 874
No 26
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.83 E-value=3.5e-20 Score=109.31 Aligned_cols=73 Identities=25% Similarity=0.383 Sum_probs=66.6
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
.+|++++.+|+++.+++++++||++||++|++. .+ ++++.|||+|.|+.|+|+.||++|||++|+ ++|++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~-------~~-i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~--~i~l~ 70 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-------EG-IPPQQQRLIYSGKQMNDEKTAADYKILGGS--VLHLV 70 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHH-------HC-CCGGGEEEEETTEECCTTSBGGGGTCCTTC--EEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-------HC-cChHHEEEEECCEECCCCCcHHHcCCCCCC--EEEEE
Confidence 468999999999999999999999999999995 44 899999999999999999999999999776 68988
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 71 ~~~ 73 (76)
T 1ndd_A 71 LAL 73 (76)
T ss_dssp ECC
T ss_pred EeC
Confidence 774
No 27
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=9e-21 Score=123.68 Aligned_cols=77 Identities=16% Similarity=0.260 Sum_probs=68.0
Q ss_pred EEEEE-ecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 2 NLRLI-LVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 2 ~l~~~-~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
.++|+ ...|+.++++++++.||++||+++++. .+ +|++.|||||+||+|.|++||++|||++|. |||||
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~-------~~-iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~--TIhLv 86 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHL-------LG-IPHSVLQIRYSGKILKNNETLVQHGVKPQE--IVQVE 86 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHH-------HT-CCTTTEEEEETTEEECSSCCHHHHSCCSSC--EEEEE
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhh-------hC-CChHHEEEEECCeEcCCcchHHHcCCCCCC--EEEEE
Confidence 45665 446789999999999999999999995 33 999999999999999999999999999776 79999
Q ss_pred ecCCCCCC
Q psy5872 81 PRENLPEP 88 (91)
Q Consensus 81 ~~~~~p~~ 88 (91)
+++..|+.
T Consensus 87 i~s~~p~~ 94 (118)
T 2daf_A 87 IFSTNPDL 94 (118)
T ss_dssp EEESCTTT
T ss_pred EecCCCcc
Confidence 99887764
No 28
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=112.04 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=66.3
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++++.+|+.+.+++++++||++||++|++. .+ ++++.|||+|.||.|+|+.||++|||++|+ +||++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~-------~~-i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~--~i~l~ 77 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEK-------LN-VPVRQQRLLFKGKALADGKRLSDYSIGPNS--KLNLV 77 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHH-------TC-CCTTTCEEEETTEECCTTSBGGGGTCCSSB--CCEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-------HC-cCHHHEEEEECCeECCCCCcHHHcCCCCCC--EEEEE
Confidence 468899999999999999999999999999996 34 899999999999999999999999999776 68988
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 78 ~~~ 80 (81)
T 2dzi_A 78 VKP 80 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 875
No 29
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=2.9e-20 Score=112.26 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=67.3
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++++.+|+++.+++++++||++||++|++. .+ +|++.|||+|.|+.|+|+.||++|+|++++ ++|++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-------~~-ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~--~i~l~ 73 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIHNHS--ALYLL 73 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHH-------HC-CCGGGEEEEETBEECCTTCBTTTTTCCTTC--EEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-------HC-CCHHHEEEEECCeECCCCCCHHHCCCCCCC--EEEEE
Confidence 578999999999999999999999999999996 34 899999999999999999999999999775 78888
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
+|..
T Consensus 74 ~rl~ 77 (85)
T 3n3k_B 74 LKLR 77 (85)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 8753
No 30
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.83 E-value=3.7e-20 Score=109.97 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=65.1
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++++ +|+++.+++++++||++||++|++. .+ ++++.|||+|+||.|+|+.||++|||++|+ ++|++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~-------~~-i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~--~i~l~ 73 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKA-------NG-IPVANQRLIYSGKILKDDQTVESYHIQDGH--SVHLV 73 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHH-------HC-CCGGGEEEEETTEECCTTSBTGGGTCCTTC--EEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH-------hC-CCHHHEEEEECCeEcCCCCCHHHcCCCCCC--EEEEE
Confidence 4688888 9999999999999999999999995 44 899999999999999999999999999775 79987
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
.++
T Consensus 74 ~~~ 76 (77)
T 2bwf_A 74 KSQ 76 (77)
T ss_dssp ECC
T ss_pred EcC
Confidence 664
No 31
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.83 E-value=4.4e-20 Score=114.31 Aligned_cols=73 Identities=27% Similarity=0.434 Sum_probs=66.8
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|+||+.+|+++.+++++++||++||++|++. .+ ++++.|||+|.|+.|+|+.||++|||++|+ +|||+
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~-------~g-ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~--~i~l~ 71 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLV 71 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHH-------HC-CCGGGEEEEETTEECCTTSBTGGGTCCTTC--EEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhh-------hC-CChhHEEEEECCEECCCCCcHHHcCCCCCC--EEEEE
Confidence 478999999999999999999999999999996 34 899999999999999999999999999776 68888
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 72 ~r~ 74 (96)
T 3k9o_B 72 LRL 74 (96)
T ss_dssp ECC
T ss_pred EEc
Confidence 874
No 32
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.83 E-value=4e-20 Score=114.86 Aligned_cols=73 Identities=29% Similarity=0.469 Sum_probs=65.4
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCC-CcccccCCCCCCcEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSN-VTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~~~~~tvhl 79 (91)
++|+||+.+|+.+.++|++++||++||++|++. . +++|||||.||.|+|+ .||++|||++| .+|||
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~----------~-~~~qrLi~~Gk~L~D~~~tL~~y~i~~g--~~i~l 74 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPG----------Q-ESQMKLIYQGRLLQDPARTLSSLNITNN--CVIHC 74 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSS----------T-TTTCEEEETTEECCCSSCBTTTTTCCTT--EEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhh----------C-cCcEEEEECCEEccCCcCCHHHcCCCCC--CEEEE
Confidence 478999999999999999999999999999995 2 8999999999999998 99999999866 47999
Q ss_pred EecCCCC
Q psy5872 80 VPRENLP 86 (91)
Q Consensus 80 v~~~~~p 86 (91)
+++.+.+
T Consensus 75 ~~~~~~~ 81 (95)
T 1wia_A 75 HRSPPGA 81 (95)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9886543
No 33
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=115.80 Aligned_cols=74 Identities=18% Similarity=0.330 Sum_probs=66.4
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|.+|+.+|+++.+++++++||++||++|++. .+ +|+++|||+|+|+.|+|+.||++|||++|+ +|||+
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~-------~g-ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~--~i~l~ 74 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-------EG-VQDDLFWLTFEGKPLEDQLPLGEYGLKPLS--TVFMN 74 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHH-------TC-SCTTTEEEESSSSCCCTTSBHHHHHCSTTC--EEEEE
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHH-------hC-CChhHEEEEECCEECCCCCcHHHcCCCCCC--EEEEE
Confidence 468999999999999999999999999999996 44 999999999999999999999999999775 78998
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
++..
T Consensus 75 ~~~~ 78 (88)
T 2hj8_A 75 LRLR 78 (88)
T ss_dssp EC--
T ss_pred EEcC
Confidence 8753
No 34
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=5e-20 Score=111.05 Aligned_cols=74 Identities=24% Similarity=0.379 Sum_probs=67.2
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++++.+|+++.+++++++||++||++|++. .+ +|++.|||+|.|+.|+|+.||++|+|++++ ++||+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-------~~-i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~--~l~l~ 73 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKWS--TLFLL 73 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-------HC-CCGGGCEEEETTEECCTTSBTGGGTCCTTC--EEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH-------HC-cChHHEEEEECCEECCCCCCHHHcCCCCCC--EEEEE
Confidence 478999999999999999999999999999996 33 899999999999999999999999999765 78988
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
++..
T Consensus 74 ~r~~ 77 (85)
T 3mtn_B 74 LRLR 77 (85)
T ss_dssp CCCC
T ss_pred EECc
Confidence 8753
No 35
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=3.9e-20 Score=115.61 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=66.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCC-CcccccCCCCCCcEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSN-VTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~~~~~tvhl 79 (91)
++|.+|+.+| ++++++++++||++||++|++. ++ +|+++|||+|+||.|+|+ .||++|||++|+ +|||
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gs--tl~l 84 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIV-------EN-TPIKRMQLYYSGIELADDYRNLNEYGITEFS--EIVV 84 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHH-------SS-SCTTTEEEEETTEEECCTTSBHHHHTCCTTE--EEEE
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHH-------HC-cCHHHEEEEECCEECCCCcccHHHCCCCCCC--EEEE
Confidence 4688999888 9999999999999999999996 44 899999999999999999 999999999664 7999
Q ss_pred EecCC
Q psy5872 80 VPREN 84 (91)
Q Consensus 80 v~~~~ 84 (91)
+++..
T Consensus 85 v~r~~ 89 (94)
T 2kan_A 85 FLKSI 89 (94)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 98864
No 36
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.82 E-value=1.9e-20 Score=117.32 Aligned_cols=73 Identities=16% Similarity=0.302 Sum_probs=67.4
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++++++|+++.++|++++||++||++|++. ++ +++++|||||.|+.|+|+.||++|+|++|+ +|||+
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~-------~g-ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~--~I~l~ 91 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-------QG-VPMNSLRFLFEGQRIADNHTPKELGMEEED--VIEVY 91 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHH-------HT-CCGGGEEEEETTEECCTTCCHHHHTCCTTC--EEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-------HC-CChhhEEEEECCeEcCCCCCHHHCCCCCCC--EEEEE
Confidence 478999999999999999999999999999995 45 999999999999999999999999999776 69998
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 92 ~~~ 94 (97)
T 1wyw_B 92 QEQ 94 (97)
T ss_dssp ESS
T ss_pred Eec
Confidence 875
No 37
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=4.6e-20 Score=112.25 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=67.2
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++++.+|+++.+++++++||++||++|++. .+ ++++.|||+|.|+.|+|+.||++|+|+++ .++|++
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-------~g-i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g--~~i~l~ 77 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQ-------QG-LPKKQQQLEFQGQVLQDWLGLGIYGIQDS--DTLILS 77 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHH-------TC-CCTTTEEEEETTEECCSSSBHHHHTCCTT--EEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHH-------hC-CChHHEEEEECCEEccCCCCHHHCCCCCC--CEEEEE
Confidence 468999999999999999999999999999996 34 89999999999999999999999999866 479998
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
++..
T Consensus 78 ~~~~ 81 (87)
T 1wh3_A 78 KKKG 81 (87)
T ss_dssp ECSC
T ss_pred Eecc
Confidence 8764
No 38
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.82 E-value=1.3e-19 Score=106.87 Aligned_cols=73 Identities=27% Similarity=0.436 Sum_probs=66.6
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
..|++++.+|+++.+++++++||++||++|++. .+ ++++.|||+|.|+.|+|+.||++|||++|+ ++|++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~-------~~-i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~--~i~l~ 70 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQRES--TLHLV 70 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-------HC-CCGGGEEEEETTEECCTTCBTGGGTCCTTC--EEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHH-------HC-cCHHHeEEEECCeECCCCCcHHHcCCCCCC--EEEEE
Confidence 368999999999999999999999999999995 34 899999999999999999999999999776 78988
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 71 ~~~ 73 (76)
T 3a9j_A 71 LRL 73 (76)
T ss_dssp ECC
T ss_pred EeC
Confidence 875
No 39
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=9.7e-20 Score=112.06 Aligned_cols=72 Identities=29% Similarity=0.429 Sum_probs=65.0
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEe
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVP 81 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~ 81 (91)
.+.+++++|+++.+++++++||++||++|++. .+ +|++.|||+|+||.|+|+.||++|||++|+ +|||++
T Consensus 11 ~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~--~i~l~~ 80 (88)
T 1sif_A 11 QLFIKTLTGKTFTVEMEPSDTIENLKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLVL 80 (88)
T ss_dssp EEEEEETTSCEEEEECCTTSBHHHHHHHHHHH-------HC-CCGGGCEEEETTEECCTTSBSGGGTCCTTC--EEEEEC
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHHHHH-------HC-cChhhEEEEECCEECCCCCcHHHcCCCCCC--EEEEEE
Confidence 68899999999999999999999999999995 44 899999999999999999999999999775 789887
Q ss_pred cC
Q psy5872 82 RE 83 (91)
Q Consensus 82 ~~ 83 (91)
+.
T Consensus 81 r~ 82 (88)
T 1sif_A 81 RL 82 (88)
T ss_dssp --
T ss_pred eC
Confidence 75
No 40
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.81 E-value=1.5e-19 Score=115.11 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=67.5
Q ss_pred CEEEEEecCC---CEEEEEeCC---------CCcHHHHHHHHhhcCCCCCcccccCCCCc-EEEEEcCeecCCCCccccc
Q psy5872 1 INLRLILVSG---KTKEFLFSP---------SDSAGDIAQHVFDNWPEDWSDEAVAKADI-LRLIYQGRFLHSNVTLGAL 67 (91)
Q Consensus 1 i~l~~~~~~g---~~~~~~v~~---------~~TV~~lK~~I~~~~p~~~~~~~~~~~~~-qrLI~~Gk~L~D~~tL~~~ 67 (91)
+.|+||+.+| +++.++|++ ++||++||++|++..|+ + ++++. |||||.||.|+|+.||++|
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~-----g-ip~~~~qrLi~~Gk~L~D~~tL~~y 86 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQE-----S-VPDPELIDLIYCGRKLKDDQTLDFY 86 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTT-----T-CCCSSSEEEEETTEECCTTCBHHHH
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhcc-----C-CChhhcEEEEECCeECCCCCcHHHc
Confidence 5689999999 899999554 49999999999997431 3 88999 9999999999999999999
Q ss_pred CCCCCCcEEEEEEecCCCCCCC
Q psy5872 68 GLTCSKTTVMHLVPRENLPEPN 89 (91)
Q Consensus 68 ~i~~~~~~tvhlv~~~~~p~~~ 89 (91)
||++|. +|||+++.. |.|.
T Consensus 87 ~i~~g~--~i~lv~~~~-~~~~ 105 (107)
T 1x1m_A 87 GIQPGS--TVHVLRKSW-SGPS 105 (107)
T ss_dssp TCCTTC--EEEEEESSC-CSSC
T ss_pred CCCCCC--EEEEEeCCC-CCCC
Confidence 999775 799988774 4443
No 41
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.81 E-value=1.5e-19 Score=115.80 Aligned_cols=73 Identities=27% Similarity=0.434 Sum_probs=67.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++|+.+|+++.+++++++||++||++|++. .+ +|++.|||+|+||.|+|+.||++|+|++|+ +|||+
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs--~I~l~ 105 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLV 105 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHH-------HC-CCGGGEEEEETTEECCTTSBTTTTTCCTTC--EEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-------hC-CChHHEEEEECCEECCCCCcHHHCCCCCCC--EEEEE
Confidence 468999999999999999999999999999996 34 899999999999999999999999999775 79998
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
+|.
T Consensus 106 ~rl 108 (111)
T 3vdz_A 106 LRL 108 (111)
T ss_dssp ECC
T ss_pred Eec
Confidence 875
No 42
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=1.2e-19 Score=114.54 Aligned_cols=75 Identities=20% Similarity=0.314 Sum_probs=66.5
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|+|++.+|+ +.+++++++||++||++|++. .+ +++++|||+|+||.|+|+.||++|||++|+ +|||+
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gs--tI~l~ 91 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQR-------FK-AHPDQLVLIFAGKILKDPDSLAQCGVRDGL--TVHLV 91 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHH-------HT-CCGGGEEEEETTEECCTTSBHHHHTCCTTC--EEEEE
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHH-------HC-cChhhEEEEECCEECCCcCcHHHCCCCCCC--EEEEE
Confidence 46889999886 799999999999999999995 44 899999999999999999999999999765 79998
Q ss_pred ecCCCC
Q psy5872 81 PRENLP 86 (91)
Q Consensus 81 ~~~~~p 86 (91)
++...+
T Consensus 92 ~r~~~~ 97 (100)
T 1yqb_A 92 IKRQHR 97 (100)
T ss_dssp ECCCCS
T ss_pred EcCCCC
Confidence 887543
No 43
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=6.1e-20 Score=114.06 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=66.4
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++++. |+++.+++++++||++||++|++. .+ ++++.|||+|.||.|+|+.||++|||++| .+|||+
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~-------~g-ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g--~~i~l~ 86 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKY-------LH-CNADRLVLIFTGKILRDQDILSQRGILDG--STVHVV 86 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHH-------TC-SCTTTBCCEETTEECCTTSCHHHHTCCTT--EEEECC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHH-------hC-CCHHHEEEEECCEECCCcCCHHHCCCCCC--CEEEEE
Confidence 46888888 999999999999999999999996 34 89999999999999999999999999966 479998
Q ss_pred ecCCC
Q psy5872 81 PRENL 85 (91)
Q Consensus 81 ~~~~~ 85 (91)
++...
T Consensus 87 ~~~~~ 91 (96)
T 1wx8_A 87 VRSHS 91 (96)
T ss_dssp BCCSS
T ss_pred EeCCC
Confidence 88653
No 44
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=3.3e-20 Score=118.86 Aligned_cols=74 Identities=12% Similarity=0.197 Sum_probs=63.7
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCC---------------CcEEEEEcCeecC-CCCcc
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKA---------------DILRLIYQGRFLH-SNVTL 64 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~---------------~~qrLI~~Gk~L~-D~~tL 64 (91)
+.|+|++++|++++++|++++||++||++|++. ++ +++ ++|||||+||.|. |++||
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~-------~~-i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL 79 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRY-------VQ-LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKL 79 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHH-------HH-HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBH
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHH-------hC-CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCH
Confidence 368999999999999999999999999999996 33 333 5789999999995 67999
Q ss_pred cccCCCCCCcEEEEEEecCC
Q psy5872 65 GALGLTCSKTTVMHLVPREN 84 (91)
Q Consensus 65 ~~~~i~~~~~~tvhlv~~~~ 84 (91)
++|||++|+ +||+|++-.
T Consensus 80 ~dygI~~g~--~l~lv~~lr 97 (105)
T 1v2y_A 80 RDYGIRNRD--EVSFIKKLG 97 (105)
T ss_dssp HHHTCCSSE--EEEEEECSC
T ss_pred HHcCCCCCC--EEEEEehhc
Confidence 999999775 689988743
No 45
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=112.75 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=65.1
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
+.|++++. |+++.+++++++||++||++|++. .+ ++++.|||+|+||.|+|+.||++|||++|+ +|||+
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~--~I~l~ 94 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKR-------FK-SHTDQLVLIFAGKILKDQDTLSQHGIHDGL--TVHLV 94 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHH-------HT-CCGGGEEEEETTEEECTTCCTGGGTCCTTC--EEEEE
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHH-------HC-cChhhEEEEECCEECCCcCcHHHcCCCCCC--EEEEE
Confidence 46888888 899999999999999999999995 44 899999999999999999999999999775 78988
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 95 ~~~ 97 (101)
T 2klc_A 95 IKT 97 (101)
T ss_dssp ECC
T ss_pred EcC
Confidence 875
No 46
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3e-20 Score=117.55 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=64.9
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|++++ .|+++.+++++++||++||++|++. .+ ++++.|||+|+||.|+|+.||++|||++|+ +|||+
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~--tI~lv 97 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKA-------NG-IPVANQRLIYSGKILKDDQTVESYHIQDGH--SVHLV 97 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHH-------HS-CCSTTCCEEETTEECCTTSBTTTTTCCTTE--EEEEC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHH-------HC-cChHHEEEEECCEECCCcCcHHHCCCCCCC--EEEEE
Confidence 5688887 8999999999999999999999996 44 899999999999999999999999999664 79998
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
.+.
T Consensus 98 ~~~ 100 (101)
T 3m63_B 98 KSQ 100 (101)
T ss_dssp CCC
T ss_pred eCC
Confidence 764
No 47
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.80 E-value=7.1e-19 Score=109.70 Aligned_cols=74 Identities=27% Similarity=0.429 Sum_probs=67.3
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
.+|++|+.+|+++.+++++++||++||++|++. .+ ++++.|||+|+||.|+|+.||++|||++|+ +|||+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~-------~g-i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~--~i~l~ 70 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLV 70 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-------TC-CCGGGEEEEETTEECCTTSBTGGGTCCTTC--EEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-------HC-cChhhEEEEECCEECCCCCCHHHcCCCCCC--EEEEE
Confidence 368999999999999999999999999999996 34 899999999999999999999999999776 68988
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
++..
T Consensus 71 ~~~~ 74 (98)
T 1yx5_B 71 LRLR 74 (98)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 8764
No 48
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=111.80 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=64.2
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++++ |+++.+++++++||++||++|++. .+ +++++|||+|+||.|+|+.||++|+|++|+ +|||+
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gs--tI~lv 87 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASL-------EG-IAPEDQVVLLAGAPLEDEATLGQCGVEALT--TLEVA 87 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHH-------HT-CCGGGCEEEETTEECCTTSBHHHHTCCSSC--EEEEE
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHH-------hC-cChhHEEEEECCEECCCCCcHHHCCCCCCC--EEEEE
Confidence 4677887 899999999999999999999995 44 899999999999999999999999999775 79998
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
+|.
T Consensus 88 ~rl 90 (93)
T 2l7r_A 88 GRM 90 (93)
T ss_dssp CCC
T ss_pred Eec
Confidence 875
No 49
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.80 E-value=2e-19 Score=117.38 Aligned_cols=71 Identities=23% Similarity=0.169 Sum_probs=61.0
Q ss_pred EEecCCC-EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCC-----CCcEEEE
Q psy5872 5 LILVSGK-TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTC-----SKTTVMH 78 (91)
Q Consensus 5 ~~~~~g~-~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~-----~~~~tvh 78 (91)
|+.-.++ ++.+++++++||.+||++|++. ++ +|+++|||||+||+|+|++||++|||+. -...|||
T Consensus 5 l~Ikr~ktTI~ldve~sdTV~~lK~kI~~~-------~g-iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~ 76 (118)
T 4ajy_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGI-------LK-RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVG 76 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHH-------HC-CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEE
T ss_pred EEEecCCEEEEEEcCCCChHHHHHHHHHHH-------HC-CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEE
Confidence 4444454 8889999999999999999995 55 9999999999999999999999999985 0146899
Q ss_pred EEecC
Q psy5872 79 LVPRE 83 (91)
Q Consensus 79 lv~~~ 83 (91)
|++|.
T Consensus 77 Lvlr~ 81 (118)
T 4ajy_B 77 LAFRA 81 (118)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99985
No 50
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.79 E-value=1.4e-19 Score=118.10 Aligned_cols=73 Identities=21% Similarity=0.149 Sum_probs=61.9
Q ss_pred EEEEecCCC-EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCC-----CcEE
Q psy5872 3 LRLILVSGK-TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCS-----KTTV 76 (91)
Q Consensus 3 l~~~~~~g~-~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~-----~~~t 76 (91)
+.++...|+ ++.+++++++||++||++|++. +| +++++|||||+||.|+|++||++|||++. ..+|
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~-------eg-IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~st 74 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGI-------LK-RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPAT 74 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHH-------HC-CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEE
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHH-------hC-CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCE
Confidence 344444564 6899999999999999999995 66 99999999999999999999999999830 2468
Q ss_pred EEEEecC
Q psy5872 77 MHLVPRE 83 (91)
Q Consensus 77 vhlv~~~ 83 (91)
+||++|.
T Consensus 75 L~L~lr~ 81 (118)
T 2fnj_B 75 VGLAFRA 81 (118)
T ss_dssp EEEEEBS
T ss_pred EEEEecC
Confidence 9999994
No 51
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.79 E-value=4.6e-19 Score=118.31 Aligned_cols=74 Identities=18% Similarity=0.330 Sum_probs=67.4
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
+.|.+++.+|+++++++++++||++||++|++. ++ +|+++|||+|+|+.|+|+.||++|||++|+ ++||+
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-------~g-ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~--~l~l~ 151 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-------EG-VQDDLFWLTFEGKPLEDQLPLGEYGLKPLS--TVFMN 151 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-------HT-CCGGGEEEEETTEECCTTSBGGGGTCCTTC--EEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHH-------HC-CCHHHEEEEECCeecCCCCCHHHcCCCCCC--EEEEE
Confidence 357889999999999999999999999999995 44 999999999999999999999999999776 79999
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
+|..
T Consensus 152 ~rl~ 155 (159)
T 3rt3_B 152 LRLR 155 (159)
T ss_dssp ECCC
T ss_pred EecC
Confidence 8753
No 52
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.79 E-value=6.8e-19 Score=120.23 Aligned_cols=74 Identities=26% Similarity=0.403 Sum_probs=68.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
.+|.+|+.+|+++.+++++++||++||++|++. ++ +++++|||+|+||.|+|+.||++|||++|+ ++||+
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gs--tI~Lv 70 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLV 70 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-------HC-CCTTTEEEEETTEECCTTSBGGGGTCCTTC--EEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-------HC-cCHHHEEEEECCccccCcCcHHHcCCCCCC--EEEEE
Confidence 478999999999999999999999999999996 44 999999999999999999999999999776 79999
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
+|..
T Consensus 71 lrl~ 74 (169)
T 3l0w_B 71 LRLR 74 (169)
T ss_dssp ECCC
T ss_pred EEec
Confidence 8864
No 53
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=4.7e-19 Score=116.01 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=64.7
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|+|++. |+++.++|++++||++||++|++. .+ +++++|||||.||.|+|+.||++|||++| .+|||+
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~QrLi~~Gk~L~D~~tL~dygI~~g--stI~lv 101 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKR-------FK-SQTDQLVLIFAGKILKDQDTLIQHGIHDG--LTVHLV 101 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHH-------HC-SCSSSEEEEETTEEESTTSCGGGTTCSSS--EEEEEE
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHH-------HC-cCcceEEEEECCEEcCCCCCHHHcCCCCC--CEEEEE
Confidence 46888888 999999999999999999999995 44 89999999999999999999999999966 479998
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
++..
T Consensus 102 ~~~~ 105 (125)
T 1j8c_A 102 IKRD 105 (125)
T ss_dssp EC--
T ss_pred eccC
Confidence 8764
No 54
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.1e-18 Score=112.48 Aligned_cols=73 Identities=26% Similarity=0.381 Sum_probs=67.1
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEe
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVP 81 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~ 81 (91)
.|.+++++|+++.+++++++||++||++|++. .+ +|++.|||+|+|+.|+|+.||++|||++|+ +|||++
T Consensus 11 ~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gs--tI~l~~ 80 (114)
T 2kdi_A 11 QIFAKTLTGKTITLEVESSDTIDNVKSKIQDK-------EG-IPPDQQRLIWAGKQLEDGRTLSDYNIQRES--TLHLVL 80 (114)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHH-------HC-CCGGGEEEEETTEECCTTCBTTTTTCCSSC--EEEEEE
T ss_pred EEEEEeCCCcEEEEEECCCCcHHHHHHHHHHH-------HC-cChHHEEEEECCEECCCCCcHHHCCCCCCC--EEEEEE
Confidence 58899999999999999999999999999995 44 999999999999999999999999999775 789988
Q ss_pred cCC
Q psy5872 82 REN 84 (91)
Q Consensus 82 ~~~ 84 (91)
+..
T Consensus 81 ~~~ 83 (114)
T 2kdi_A 81 RLR 83 (114)
T ss_dssp CCC
T ss_pred EcC
Confidence 764
No 55
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=4.1e-19 Score=112.09 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=63.9
Q ss_pred EEEEEecCC----CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCC-CcccccCCCCCCcEE
Q psy5872 2 NLRLILVSG----KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSN-VTLGALGLTCSKTTV 76 (91)
Q Consensus 2 ~l~~~~~~g----~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~~~~~t 76 (91)
.|+|++.+| +++.+++++++||++||++|++. .+ +++++|||+|.||.|+|+ .||++|||++|+ +
T Consensus 9 ~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~-------~g-ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~--~ 78 (102)
T 1v5o_A 9 LITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELE-------SG-VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGD--M 78 (102)
T ss_dssp EEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHH-------TC-CCGGGBCEEETTEEECCSSSBHHHHTCCTTE--E
T ss_pred EEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHH-------HC-cChHHeEEEECCEECCCCcccHHHCCCCCCC--E
Confidence 578888755 79999999999999999999995 44 999999999999999887 799999999665 7
Q ss_pred EEEEecCC
Q psy5872 77 MHLVPREN 84 (91)
Q Consensus 77 vhlv~~~~ 84 (91)
|||+.+..
T Consensus 79 l~l~~~~~ 86 (102)
T 1v5o_A 79 VVLLQKDN 86 (102)
T ss_dssp EEECBCCC
T ss_pred EEEEECCC
Confidence 89888754
No 56
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=4.9e-19 Score=112.18 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=64.8
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|+|+..+|+ +.+++++++||++||++|++. .+ ++++.|||+|.||.|+|+.||++|||++| .+|||+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g--~~i~l~ 86 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQR-------FK-AHPDQLVLIFAGKILKDPDSLAQCGVRDG--LTVHLV 86 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHH-------HT-CCTTTEEEEETTEECCTTSCHHHHTCCTT--EEEEEE
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHH-------HC-cChhhEEEEECCEECCCcCcHHHcCCCCC--CEEEEE
Confidence 46889988886 799999999999999999996 44 89999999999999999999999999966 479998
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
++..
T Consensus 87 ~~~~ 90 (106)
T 1wx7_A 87 IKRQ 90 (106)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8754
No 57
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=7.4e-19 Score=108.52 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=65.4
Q ss_pred CEEEEEecCCCEEEEEeCCC-----CcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCC-CCcccccCCCCCCc
Q psy5872 1 INLRLILVSGKTKEFLFSPS-----DSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS-NVTLGALGLTCSKT 74 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~-----~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D-~~tL~~~~i~~~~~ 74 (91)
++|+++. .|+++.++++++ +||++||++|++. .+ ++++.|||+|.||.|+| +.+|++|||++|.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~-------~g-ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~- 77 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEV-------IG-VPQSFQKLIFKGKSLKEMETPLSALGIQDGC- 77 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHH-------TC-CCTTTCEEEETTEEECCSSSBHHHHTCCSSE-
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHH-------HC-cCHHHEEEEECCeecCCCcccHHHCCCCCCC-
Confidence 4678877 589999999995 9999999999996 44 89999999999999988 6699999998664
Q ss_pred EEEEEEecCCCCCC
Q psy5872 75 TVMHLVPRENLPEP 88 (91)
Q Consensus 75 ~tvhlv~~~~~p~~ 88 (91)
+|||+.++..|++
T Consensus 78 -~i~l~~~~~~~~~ 90 (92)
T 1wxv_A 78 -RVMLIGKKNSGPS 90 (92)
T ss_dssp -EEEEESCCSCSCC
T ss_pred -EEEEEecCCCCCC
Confidence 7999887755543
No 58
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.65 E-value=1e-20 Score=112.46 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=66.1
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEe
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVP 81 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~ 81 (91)
.|.+|+.+|+++.+++++++||++||++|++. .+ ++++.|||+|+|+.|+|+.||++|||++|+ ++|+++
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-------~g-i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~--~i~l~~ 71 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQ-------QG-VPADQLRVIFAGKELPNHLTVQNCDLEQQS--IVHIVQ 71 (76)
Confidence 57889999999999999999999999999995 44 899999999999999999999999999665 799988
Q ss_pred cCC
Q psy5872 82 REN 84 (91)
Q Consensus 82 ~~~ 84 (91)
|.+
T Consensus 72 rlr 74 (76)
T 3b1l_X 72 RPR 74 (76)
Confidence 753
No 59
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=111.07 Aligned_cols=73 Identities=27% Similarity=0.434 Sum_probs=66.5
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++++.+|+++.+++++++||++||++|++. .+ ++++.|||+|+||.|+|+.||++|||++|+ +|||+
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs--~I~l~ 105 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLV 105 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHH-------HC-CCTTTEEEEETTEECCSSCBTTTTTCCTTC--EEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHH-------HC-cCcccEEEEECCEECCCCCcHHHcCCCCCC--EEEEE
Confidence 468899999999999999999999999999995 34 899999999999999999999999999775 78998
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
+|.
T Consensus 106 ~rl 108 (111)
T 2ojr_A 106 LRL 108 (111)
T ss_dssp ECC
T ss_pred EeC
Confidence 875
No 60
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.78 E-value=8.2e-19 Score=112.06 Aligned_cols=75 Identities=19% Similarity=0.308 Sum_probs=67.4
Q ss_pred CEEEEEec---CCCEEEEEeCC-CCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEE
Q psy5872 1 INLRLILV---SGKTKEFLFSP-SDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTV 76 (91)
Q Consensus 1 i~l~~~~~---~g~~~~~~v~~-~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~t 76 (91)
|.|+++++ +|+++.+++++ ++||++||++|++. .+ +++++|||+|+|+.|+|+.||++|||++|+ +
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~-------~g-ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~--~ 97 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGE-------IQ-IPANKQKLSGKAGFLKDNMSLAHYNVGAGE--I 97 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHH-------TT-CCTTTSEEECSSSBCCTTSBTTTTTCSSSC--E
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHH-------HC-CCHHHeEEEECCEECCCCCcHHHCCCCCCC--E
Confidence 46888888 88999999998 99999999999996 44 999999999999999999999999999776 7
Q ss_pred EEEEecCCC
Q psy5872 77 MHLVPRENL 85 (91)
Q Consensus 77 vhlv~~~~~ 85 (91)
|||+++...
T Consensus 98 l~l~~r~~G 106 (111)
T 1we6_A 98 LTLSLRERS 106 (111)
T ss_dssp EEEECSSCC
T ss_pred EEEEEEcCC
Confidence 999887643
No 61
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.78 E-value=1.3e-18 Score=111.53 Aligned_cols=72 Identities=13% Similarity=0.047 Sum_probs=64.3
Q ss_pred EEEEEecCC--CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCC-CCCcEEEE
Q psy5872 2 NLRLILVSG--KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLT-CSKTTVMH 78 (91)
Q Consensus 2 ~l~~~~~~g--~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~-~~~~~tvh 78 (91)
.++|+.+.+ .+++++++|++||++||++|++. +| +|+++|||||+|++|+|++||++|||+ +|+ ++|
T Consensus 26 ~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k-------~G-ipp~~QRli~ggkll~D~~TL~~ygI~~~G~--t~h 95 (105)
T 4dbg_A 26 WVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLD-------YG-FPPVLQQWVIGQRLARDQETLHSHGVRQNGD--SAY 95 (105)
T ss_dssp EEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHH-------HC-CCGGGEEEEETTEEECTTCBTGGGTCCSTTC--EEE
T ss_pred EEEEEccCCCCceEEEEECCcChHHHHHHHHHHH-------hC-CCHHHEEEeccCeEccCcCcHHHcCCCCCCC--EEE
Confidence 577888875 79999999999999999999996 55 999999999999999999999999994 676 799
Q ss_pred EEecC
Q psy5872 79 LVPRE 83 (91)
Q Consensus 79 lv~~~ 83 (91)
|++-+
T Consensus 96 L~l~~ 100 (105)
T 4dbg_A 96 LYLLS 100 (105)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 98865
No 62
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.77 E-value=1.4e-18 Score=106.51 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=62.7
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEec
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVPR 82 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~~ 82 (91)
..+++.+|+++.+++++++||++||++|++. .+ ++++.|||+|+||.|+|+.||++|||++|+ +|||+..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~--~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPI-------TN-VLPRGQKLIFKGKVLVETSTLKQSDVGSGA--KLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHH-------HC-CCTTTCEEEETTEECCTTCBTTTTTCCTTE--EEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHH-------HC-cChHHEEEEECCeECCCcCCHHHCCCCCCC--EEEEEEe
Confidence 3466789999999999999999999999995 44 899999999999999999999999999664 7888765
Q ss_pred C
Q psy5872 83 E 83 (91)
Q Consensus 83 ~ 83 (91)
+
T Consensus 84 ~ 84 (85)
T 2kd0_A 84 Q 84 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 63
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.77 E-value=2.5e-18 Score=114.72 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=67.2
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE-E-cCeecCCCCcccccCCCCCCcEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI-Y-QGRFLHSNVTLGALGLTCSKTTVMH 78 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI-~-~Gk~L~D~~tL~~~~i~~~~~~tvh 78 (91)
++|++++.+|+++++++++++||++||++|++. .+ +|+++|||+ | +|+.|+|+.||++|||++|+ ++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-------~g-ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~--~l~ 72 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQK-------IG-VHAFQQRLAVHPSGVALQDRVPLASQGLGPGS--TVL 72 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHH-------HC-CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTC--EEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHH-------hC-CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCC--EEE
Confidence 478999999999999999999999999999996 44 999999999 9 79999999999999999775 799
Q ss_pred EEecC
Q psy5872 79 LVPRE 83 (91)
Q Consensus 79 lv~~~ 83 (91)
++++.
T Consensus 73 l~~~~ 77 (159)
T 3rt3_B 73 LVVDK 77 (159)
T ss_dssp EEECC
T ss_pred EEccC
Confidence 99884
No 64
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.77 E-value=2.4e-18 Score=110.61 Aligned_cols=75 Identities=19% Similarity=0.371 Sum_probs=65.7
Q ss_pred CEEEEEec----------CCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCC
Q psy5872 1 INLRLILV----------SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLT 70 (91)
Q Consensus 1 i~l~~~~~----------~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~ 70 (91)
|.|+++.. +|+++.+++++++||++||++|++. .+ ++++.|||+|+|+.|+|+.||++|+|+
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~QrL~~~Gk~L~D~~tL~~y~i~ 97 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEA-------TG-MPAGKQKLQYEGIFIKDSNSLAYYNMA 97 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHH-------SS-CCTTTEEEEETTEEECTTSBHHHHTCC
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHH-------HC-CChHHEEEEECCEECCCCCCHHHCCCC
Confidence 46677765 4789999999999999999999996 44 999999999999999999999999999
Q ss_pred CCCcEEEEEEecCCC
Q psy5872 71 CSKTTVMHLVPRENL 85 (91)
Q Consensus 71 ~~~~~tvhlv~~~~~ 85 (91)
+|+ +|||+++...
T Consensus 98 ~g~--~i~lv~rl~G 110 (115)
T 1we7_A 98 SGA--VIHLALKERS 110 (115)
T ss_dssp SSC--EEEEEECCCS
T ss_pred CCC--EEEEEEEcCC
Confidence 775 7999988653
No 65
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.76 E-value=1.3e-18 Score=121.19 Aligned_cols=74 Identities=27% Similarity=0.398 Sum_probs=67.5
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|.+|+++|+++.+++++++||++||++|++. ++ +|+++|||+|+|+.|+|+.||++|+|++|+ +|||+
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~-------~g-Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gs--tI~Lv 175 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLV 175 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-------HC-CCGGGCCEEETTEECCTTCBGGGGTCCTTC--EEEEC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhc-------cC-CCHHHEEEEECCEECCCCCCHHHCCCCCCC--EEEEE
Confidence 368999999999999999999999999999995 44 899999999999999999999999999775 79998
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
++..
T Consensus 176 lrlr 179 (189)
T 3q3f_A 176 LRLR 179 (189)
T ss_dssp CCCC
T ss_pred EEcC
Confidence 8753
No 66
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=115.67 Aligned_cols=74 Identities=27% Similarity=0.429 Sum_probs=67.4
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|++++.+|+++.+++++++||++||++|++. .+ +++++|||+|+|+.|+|+.||++|||++++ ++||+
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-------~g-ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~--~l~l~ 90 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLV 90 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHH-------HC-CCGGGEEEEETTEECCTTCBTGGGTCCTTC--EEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-------HC-cChHHEEEEECCccccccCCHhHcCCcccc--eeeee
Confidence 468999999999999999999999999999995 44 999999999999999999999999999775 78988
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
++..
T Consensus 91 ~~~~ 94 (172)
T 3u30_A 91 LRLR 94 (172)
T ss_dssp ECCC
T ss_pred eccc
Confidence 8753
No 67
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.76 E-value=3.1e-18 Score=105.84 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=57.9
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEE-------cCeecCCCCcccccCCCCCCcEEEEEEe
Q psy5872 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIY-------QGRFLHSNVTLGALGLTCSKTTVMHLVP 81 (91)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~-------~Gk~L~D~~tL~~~~i~~~~~~tvhlv~ 81 (91)
.++..+..|++++||++||++|++. +| +|+++||||| .|++|+|++||++|||++|. ++||+-
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki~~~-------~G-ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~--~ihlvd 82 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENVFTH-------FA-TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEF--VIHVVD 82 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHHHTT-------SC-CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTC--EEEEEE
T ss_pred CCeEEEEEcCccCcHHHHHHHHHHH-------HC-CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCC--EEEEEe
Confidence 4477899999999999999999995 56 9999999996 69999999999999999775 799986
Q ss_pred cC
Q psy5872 82 RE 83 (91)
Q Consensus 82 ~~ 83 (91)
+.
T Consensus 83 ~~ 84 (86)
T 4b6w_A 83 LQ 84 (86)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 68
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=3.1e-18 Score=107.35 Aligned_cols=72 Identities=6% Similarity=0.142 Sum_probs=62.9
Q ss_pred CEEEEEecCCCEE-EEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 1 INLRLILVSGKTK-EFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 1 i~l~~~~~~g~~~-~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
+.|+++. .|+++ .+++++++||++||++|++. .+ +++++|||+|.||.|+|+ +|++|||++|+ +|||
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~-------tg-ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~--~i~l 75 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFAL-------TG-VQPARQKVMVKGGTLKDD-DWGNIKMKNGM--TVLM 75 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHH-------TC-CCTTTSCCEETTEECCSS-CCCSCCCCSSC--EEEC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHH-------HC-cCHHHeEEEECCcCCCCC-CHHHCCCCCCC--EEEE
Confidence 4677874 78999 69999999999999999996 44 999999999999999999 99999999776 6888
Q ss_pred EecCC
Q psy5872 80 VPREN 84 (91)
Q Consensus 80 v~~~~ 84 (91)
+..+.
T Consensus 76 ~~~~~ 80 (96)
T 1wgg_A 76 MGSAD 80 (96)
T ss_dssp CCCCC
T ss_pred Eecch
Confidence 76654
No 69
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.75 E-value=4.3e-18 Score=105.21 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=64.2
Q ss_pred CEEEEEecCCCEEEE-EeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE---EcCeecCCCCcccccCCCCCCcEE
Q psy5872 1 INLRLILVSGKTKEF-LFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI---YQGRFLHSNVTLGALGLTCSKTTV 76 (91)
Q Consensus 1 i~l~~~~~~g~~~~~-~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI---~~Gk~L~D~~tL~~~~i~~~~~~t 76 (91)
+.|+++. .|+++.+ ++++++||++||++|++. .+ +++++|||+ |.|+.|+|+.+|++|+|++|+ +
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~-------~g-ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~--~ 76 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTL-------TG-VLPERQKLLGLKVKGKPAENDVKLGALKLKPNT--K 76 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHH-------TC-CCTTTCEEESCEETTEECCTTSBHHHHTCCTTE--E
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHH-------HC-cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCC--E
Confidence 4678875 8899999 999999999999999996 44 999999999 999999999999999999664 7
Q ss_pred EEEEecCC
Q psy5872 77 MHLVPREN 84 (91)
Q Consensus 77 vhlv~~~~ 84 (91)
|||+..+.
T Consensus 77 l~l~~~~~ 84 (90)
T 1v5t_A 77 IMMMGTRE 84 (90)
T ss_dssp EEEECCCS
T ss_pred EEEEecCc
Confidence 88876553
No 70
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.74 E-value=4.8e-18 Score=115.03 Aligned_cols=72 Identities=28% Similarity=0.428 Sum_probs=64.8
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEe
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVP 81 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~ 81 (91)
.+.+++.+|+++.+++++++||++||++|++. ++ +|+++|||+|.|+.|+|+.||++|+|++|+ ++||++
T Consensus 98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-------~g-ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~--tl~l~~ 167 (172)
T 3u30_A 98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLVL 167 (172)
T ss_dssp EEEEEESSCCEEEEEECTTCBHHHHHHHHHHH-------HC-CCGGGCCEEETTEECCTTSBSGGGTCCTTC--EEEECC
T ss_pred cceeecccCcceeEEecCCCCHHHHHHHHHHH-------hC-CCceeEEEEECCccCCCCCcHHHhCCCCCC--EEEEEE
Confidence 57788999999999999999999999999996 44 999999999999999999999999999775 799988
Q ss_pred cC
Q psy5872 82 RE 83 (91)
Q Consensus 82 ~~ 83 (91)
|.
T Consensus 168 rl 169 (172)
T 3u30_A 168 RL 169 (172)
T ss_dssp --
T ss_pred ec
Confidence 74
No 71
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.74 E-value=1.1e-19 Score=118.85 Aligned_cols=74 Identities=26% Similarity=0.403 Sum_probs=0.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|.+++.+|+++.+++++++||++||++|++. .+ +|+++|||+|+|+.|+|+.||++|||++|+ +|||+
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~-------~g-ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gs--ti~l~ 70 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLV 70 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-------hC-cChHHEEEEECCEECCCCCchhhhccCCCC--EEEEE
Confidence 368899999999999999999999999999995 44 899999999999999999999999999765 78988
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
++..
T Consensus 71 ~rl~ 74 (128)
T 3u5e_m 71 LRLR 74 (128)
T ss_dssp ----
T ss_pred EEcC
Confidence 8754
No 72
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.74 E-value=1.3e-17 Score=109.39 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=66.7
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEe
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVP 81 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~ 81 (91)
.|++++.+|+++.+++++++||++||++|++. .+ ++++.|||+|.|+.|+|+.||++|||++|+ ++||++
T Consensus 78 ~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~-------~g-i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~--~i~l~~ 147 (152)
T 3b08_A 78 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLVL 147 (152)
T ss_dssp EEEEEESSSCEEEEEECTTCBHHHHHHHHHHH-------HC-CCGGGEEEEETTEECCTTSBTGGGTCCTTC--EEEEEE
T ss_pred ceeeeecCCCEEEEEeCCCCcHHHHHHHHHHH-------hC-cChhhEEEEECCEECCCCCCHHHcCCCCCC--EEEEEE
Confidence 57889999999999999999999999999995 34 899999999999999999999999999776 799988
Q ss_pred cCC
Q psy5872 82 REN 84 (91)
Q Consensus 82 ~~~ 84 (91)
|..
T Consensus 148 r~~ 150 (152)
T 3b08_A 148 RLR 150 (152)
T ss_dssp CCC
T ss_pred ecC
Confidence 763
No 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.73 E-value=3.2e-17 Score=107.54 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=66.7
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEe
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVP 81 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~ 81 (91)
.|++++.+|+++++++++++||++||++|++. .+ +|++.|||+|+|+.|+|+.||++|||++|+ ++|++.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~-------~g-ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~--~l~l~~ 71 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLVL 71 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-------HC-CCGGGEEEEETTEECCTTSBTGGGTCCTTC--EEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHH-------HC-cChHHeEEEECCeECcCcccHHHhccCCCC--eeEEEe
Confidence 68999999999999999999999999999995 34 899999999999999999999999999775 799988
Q ss_pred cCC
Q psy5872 82 REN 84 (91)
Q Consensus 82 ~~~ 84 (91)
+..
T Consensus 72 ~~~ 74 (152)
T 3b08_A 72 RLR 74 (152)
T ss_dssp CCT
T ss_pred ecc
Confidence 753
No 74
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=4.3e-18 Score=106.36 Aligned_cols=72 Identities=13% Similarity=0.273 Sum_probs=61.7
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|+++ ..|+++.+++++++||++||++|++. .+ +++++|||+|.||.|+ +.+|++|+|+++. +|||+
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~-------tg-ip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~--~i~lv 85 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSI-------TG-LPPAMQKVMYKGLVPE-DKTLREIKVTSGA--KIMVV 85 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHH-------HC-SCSTTCCCBSSSBCCS-SSBHHHHCCCTTE--EEEEC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHH-------HC-cCHHHeEEEECCeeCC-cCcHHHCCCCCCC--EEEEE
Confidence 467777 57899999999999999999999995 44 9999999999999994 4599999998664 79987
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
..+.
T Consensus 86 ~~~~ 89 (95)
T 1v86_A 86 GSTI 89 (95)
T ss_dssp CSSC
T ss_pred eccc
Confidence 6653
No 75
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.72 E-value=3e-19 Score=120.64 Aligned_cols=74 Identities=26% Similarity=0.403 Sum_probs=0.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|.|++++|+++.+++++++||++||++|++. ++ +|+++|||+|+|+.|+|+.||++|||++|+ +|||+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~-------~g-ip~~~QrLi~~Gk~L~D~~tL~dygI~~gs--tL~Lv 70 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLV 70 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHH-------hC-CCHHHEEEEECCEEccccCcHHHcCCCCCC--EEEEE
Confidence 468899999999999999999999999999996 44 999999999999999999999999999665 68888
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
++..
T Consensus 71 lrl~ 74 (152)
T 3u5c_f 71 LRLR 74 (152)
T ss_dssp ----
T ss_pred eecc
Confidence 8743
No 76
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.72 E-value=1.8e-17 Score=125.02 Aligned_cols=78 Identities=15% Similarity=0.275 Sum_probs=68.5
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
+.|+||+++|+++.++|++++||++||++|++.|+ +++ +++++|||||+||.|+|++||++|||++|+. ++|++
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~----~~g-ip~~~QrLiy~GK~L~D~~tL~dygI~~gst-Iv~lv 81 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKG----RDA-FPVAGQKLIYAGKILSDDVPIRDYRIDEKNF-VVVMV 81 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTC----SSS-CCSTEEEEESSSSEECSSSBTTTTCCCTTSC-EEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhC----cCC-CChhheEEEECCeecCCcCCHHHcCCCCCCE-EEEEE
Confidence 46899999999999999999999999999999652 134 8999999999999999999999999997764 55888
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
.+.+
T Consensus 82 ~k~~ 85 (368)
T 1oqy_A 82 TKTK 85 (368)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 8764
No 77
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.71 E-value=3.5e-17 Score=102.76 Aligned_cols=70 Identities=10% Similarity=0.086 Sum_probs=59.5
Q ss_pred CEEEEEecCC--CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEc--Ce---ec-CCCCcccccCCCCC
Q psy5872 1 INLRLILVSG--KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQ--GR---FL-HSNVTLGALGLTCS 72 (91)
Q Consensus 1 i~l~~~~~~g--~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~--Gk---~L-~D~~tL~~~~i~~~ 72 (91)
|+|.|+...+ ..+++++++++||++||++|++. +| +|+++|||+|. |+ .| +|+.||++|||++|
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~-------~G-iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~g 87 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEIL-------TG-GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDG 87 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHH-------HC-SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSS
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHH-------HC-cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCC
Confidence 4677776655 48999999999999999999995 56 99999999998 45 34 99999999999977
Q ss_pred CcEEEEEE
Q psy5872 73 KTTVMHLV 80 (91)
Q Consensus 73 ~~~tvhlv 80 (91)
+ +|||+
T Consensus 88 s--tihlv 93 (95)
T 2kjr_A 88 L--RLHVV 93 (95)
T ss_dssp C--EEEEE
T ss_pred C--EEEEE
Confidence 6 78985
No 78
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.69 E-value=8.6e-17 Score=119.01 Aligned_cols=73 Identities=27% Similarity=0.434 Sum_probs=65.6
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
++|.+|+++|+++.+++++++||++||++|++. .+ +++++|||+|+||.|+|+.||++|+|++++ +|||+
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~-------~G-Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gs--tL~Lv 303 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-------EG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKES--TLHLV 303 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-------HC-CCGGGCEEEETTEECCTTSBTGGGTCCTTC--EEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-------HC-cChHHEEEEeCCeecCCCCCHHHcCCCCCC--EEEEE
Confidence 368899999999999999999999999999995 44 999999999999999999999999999765 79998
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
+|-
T Consensus 304 lRL 306 (307)
T 3ai5_A 304 LRL 306 (307)
T ss_dssp C--
T ss_pred EeC
Confidence 874
No 79
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=6.6e-17 Score=102.60 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=62.6
Q ss_pred EecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEE--cCeecCCCCcccccCCCCCCcEEEEEEecC
Q psy5872 6 ILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIY--QGRFLHSNVTLGALGLTCSKTTVMHLVPRE 83 (91)
Q Consensus 6 ~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~--~Gk~L~D~~tL~~~~i~~~~~~tvhlv~~~ 83 (91)
++..|+++++++++++||++||++|++. ++ +|+++|||+| .|+ |+|+.+|++|+|++| .+||||+++
T Consensus 14 vk~~Gk~~~v~v~~~~TV~~LK~~I~~~-------tg-Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~g--stL~lvl~~ 82 (100)
T 2dzm_A 14 VEYRDRNVDVVLEDTCTVGEIKQILENE-------LQ-IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKN--NSLYVLTPD 82 (100)
T ss_dssp EECSSCEEEEEEETTSBHHHHHHHHHHH-------HC-CCTTTCCEECCSSSC-CCTTSBHHHHCCCSE--EEEEECCSS
T ss_pred EEeCCeEEEEEECCCCcHHHHHHHHHHH-------HC-CChhHeEEEccCCCC-CCCcCCHHHcCCCCC--CEEEEEecC
Confidence 4568999999999999999999999995 56 9999999997 677 999999999999966 589999987
Q ss_pred CCCC
Q psy5872 84 NLPE 87 (91)
Q Consensus 84 ~~p~ 87 (91)
-.++
T Consensus 83 ~~~~ 86 (100)
T 2dzm_A 83 LPPP 86 (100)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6544
No 80
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=1.3e-16 Score=100.54 Aligned_cols=71 Identities=13% Similarity=0.169 Sum_probs=59.4
Q ss_pred CEEEEEecCC--CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCe---e----cCCCCcccccCCCC
Q psy5872 1 INLRLILVSG--KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGR---F----LHSNVTLGALGLTC 71 (91)
Q Consensus 1 i~l~~~~~~g--~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk---~----L~D~~tL~~~~i~~ 71 (91)
|+|.|..-.. ..+++++++++||++||++|++. +| +|+++|||+|.|+ . ++|++||++|+|++
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~-------~G-ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~ 86 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKK-------CG-TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFD 86 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHH-------HC-CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCS
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHH-------HC-cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCC
Confidence 4566665433 48999999999999999999995 56 9999999999984 3 58999999999997
Q ss_pred CCcEEEEEEe
Q psy5872 72 SKTTVMHLVP 81 (91)
Q Consensus 72 ~~~~tvhlv~ 81 (91)
|. +|||+-
T Consensus 87 g~--~Ihlvd 94 (97)
T 2kj6_A 87 GF--RLHIID 94 (97)
T ss_dssp CC--EEEEEE
T ss_pred CC--EEEEEe
Confidence 76 699864
No 81
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=98.70 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=59.2
Q ss_pred EEEEEecCCCEE--EE-EeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEc--CeecCCCCcccccCCCCCCcEE
Q psy5872 2 NLRLILVSGKTK--EF-LFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQ--GRFLHSNVTLGALGLTCSKTTV 76 (91)
Q Consensus 2 ~l~~~~~~g~~~--~~-~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~--Gk~L~D~~tL~~~~i~~~~~~t 76 (91)
.|+|++..|+.+ .+ +++|++||++||++|++.. ++ +++++|||+|. ||+|+|+.||++|||++|. +
T Consensus 12 ~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~------~~-i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~s--t 82 (88)
T 2dzj_A 12 EVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTH------PQ-WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTA--T 82 (88)
T ss_dssp EEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHC------SS-SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEE--E
T ss_pred EEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHh------cC-CChHHeEEEecCCCcCcCCCCCHHHcCCCCCC--E
Confidence 688999998765 58 9999999999999999942 34 88999999977 9999999999999998654 6
Q ss_pred EEE
Q psy5872 77 MHL 79 (91)
Q Consensus 77 vhl 79 (91)
+|+
T Consensus 83 l~~ 85 (88)
T 2dzj_A 83 LYF 85 (88)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 82
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.64 E-value=1.4e-17 Score=116.21 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=0.0
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEe
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVP 81 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~ 81 (91)
.|.|++++|++++++|++++||++||++|++. ++ +|+++|||||+|++|+|+.||+ ++ +||||++
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~k-------eG-IP~~qQRLIf~GK~LeD~~TLs-----~~--STLhLvl 66 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQD-------MG-FEIDMMTLVNNGFIAPNTELVT-----DD--VTYYLSL 66 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHH-------hC-cChhHEEEEecCeECCCCCccc-----CC--CEEEEEE
Confidence 68899999999999999999999999999995 55 9999999999999999999998 33 4799998
Q ss_pred cCC
Q psy5872 82 REN 84 (91)
Q Consensus 82 ~~~ 84 (91)
|..
T Consensus 67 RLr 69 (189)
T 2xzm_9 67 KLL 69 (189)
T ss_dssp ---
T ss_pred ecC
Confidence 753
No 83
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=8.1e-16 Score=95.76 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=59.1
Q ss_pred CEEEEEecCCC-EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC---ee----cCCCCcccccCCCCC
Q psy5872 1 INLRLILVSGK-TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG---RF----LHSNVTLGALGLTCS 72 (91)
Q Consensus 1 i~l~~~~~~g~-~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G---k~----L~D~~tL~~~~i~~~ 72 (91)
|+|.|+.-.+. .+++++++++||++||++|++. +| +|+++|||+|.| +. ++|+.||++|||++|
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~-------~g-ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g 79 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELV-------VG-SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDG 79 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHH-------TC-SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTT
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHH-------HC-CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCC
Confidence 45666654442 7899999999999999999996 55 999999999987 43 589999999999977
Q ss_pred CcEEEEEEe
Q psy5872 73 KTTVMHLVP 81 (91)
Q Consensus 73 ~~~tvhlv~ 81 (91)
. ++||+-
T Consensus 80 ~--~l~v~d 86 (95)
T 1v6e_A 80 C--RIHVID 86 (95)
T ss_dssp C--EEEEBC
T ss_pred C--EEEEEE
Confidence 6 799864
No 84
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.61 E-value=1.1e-15 Score=97.24 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=62.8
Q ss_pred EEEEEecCCCEEEEEeC-CCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCe-----------e----cCCCCccc
Q psy5872 2 NLRLILVSGKTKEFLFS-PSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGR-----------F----LHSNVTLG 65 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~-~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk-----------~----L~D~~tL~ 65 (91)
.|+||+.+|.. .++++ +++||++||++|++. .+ +++++|||+|.|+ . ++|+.||+
T Consensus 9 ~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~-------~g-ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~ 79 (107)
T 1wf9_A 9 MLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQ-------LQ-IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRIS 79 (107)
T ss_dssp EEEEECSSCEE-EEEECCTTSBHHHHHHHHHHH-------SC-CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGG
T ss_pred EEEEECCCCCE-EEEECCCCCcHHHHHHHHHHH-------hC-cCcccCEEEECCccccccCccccccccccCCCCCCHH
Confidence 58999999966 68999 999999999999996 44 8999999999998 4 58999999
Q ss_pred ccCCCCCCcEEEEEEecCC
Q psy5872 66 ALGLTCSKTTVMHLVPREN 84 (91)
Q Consensus 66 ~~~i~~~~~~tvhlv~~~~ 84 (91)
+|||+.|+ +|||+....
T Consensus 80 ~~gi~~G~--~L~l~~~~~ 96 (107)
T 1wf9_A 80 SLNLAHGS--MVYLAYEGE 96 (107)
T ss_dssp GTCCCTTC--EEECCCSSC
T ss_pred HCCCCCCC--EEEEEeCCC
Confidence 99999776 699887654
No 85
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=5.9e-15 Score=92.41 Aligned_cols=73 Identities=12% Similarity=0.252 Sum_probs=66.4
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|++++.+|+.+.+.+.++++++.|++.+++. ++ ++++++||+|.|+.|+++.|+++|++++|+ +||++
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~-------~g-i~~~~~rf~FdG~~l~~~~Tp~dl~medgD--~Idv~ 77 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-------QG-LSMRQIRFRFDGQPINETDTPAQLEMEDED--TIDVF 77 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHH-------HT-CCGGGEEEEETTEECCTTCCTTTTTCCTTC--EEEEE
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHH-------hC-CCcccEEEEECCEEcCCCCCHHHcCCCCCC--EEEEE
Confidence 578999999999999999999999999999995 45 899999999999999999999999999887 57877
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 78 ~~~ 80 (94)
T 2io1_B 78 QQQ 80 (94)
T ss_dssp ECC
T ss_pred Eec
Confidence 764
No 86
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.58 E-value=7.9e-15 Score=95.23 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=59.2
Q ss_pred CEEEEEecCCC-EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC---ee----cCCCCcccccCCCCC
Q psy5872 1 INLRLILVSGK-TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG---RF----LHSNVTLGALGLTCS 72 (91)
Q Consensus 1 i~l~~~~~~g~-~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G---k~----L~D~~tL~~~~i~~~ 72 (91)
|+|.|+.-.+. .+++++++++||++||++|++. .| +|+++|||+|.| +. ++|+.||++|||++|
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~-------~G-ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g 78 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELV-------VG-TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDG 78 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHH-------HC-CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSS
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHH-------hC-CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCC
Confidence 45666654443 7899999999999999999995 55 999999999988 42 489999999999866
Q ss_pred CcEEEEEEec
Q psy5872 73 KTTVMHLVPR 82 (91)
Q Consensus 73 ~~~tvhlv~~ 82 (91)
.+|||+..
T Consensus 79 --~~ihvvd~ 86 (122)
T 1t0y_A 79 --YRIHAVDV 86 (122)
T ss_dssp --EEEEEEEC
T ss_pred --CEEEEEeC
Confidence 48999763
No 87
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.55 E-value=5.1e-15 Score=109.72 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=61.9
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE---EcCeecCCCCcccccCCCCCCcEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI---YQGRFLHSNVTLGALGLTCSKTTVM 77 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI---~~Gk~L~D~~tL~~~~i~~~~~~tv 77 (91)
|+|+++. .|+++++++++++||++||++|++. .| +|+++|||| |+|+.|+|+.+|++|||++|. +|
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~-------tg-Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~--~l 74 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRK-------TQ-VRPERQKLLNLKYKGKTAADNVKISALELKPNF--KL 74 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHH-------HC-CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--C--EE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH-------HC-cCHHHeEEeecccCCcccCccccHHHcCCCCCC--EE
Confidence 4677874 8999999999999999999999995 45 999999999 899999999999999999876 68
Q ss_pred EEEecC
Q psy5872 78 HLVPRE 83 (91)
Q Consensus 78 hlv~~~ 83 (91)
||+-.+
T Consensus 75 ~L~gs~ 80 (320)
T 3shq_A 75 MMVGST 80 (320)
T ss_dssp EEECCC
T ss_pred EEEccc
Confidence 886443
No 88
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.53 E-value=4.3e-14 Score=84.11 Aligned_cols=70 Identities=13% Similarity=0.248 Sum_probs=64.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|+++..+|+.+.+.+.++++++.|++.+++. .+ ++++++||+|.|+.|.++.|.++|++.+|+ ++|+.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~-------~g-i~~~~~rf~fdG~~l~~~~Tp~~l~medgD--~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-------QG-LSMRQIRFRFDGQPINETDTPAQLEMEDED--TIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHH-------HT-CCTTTCEEEETTEECCTTCCTTTTTCCTTE--EEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-------hC-CCcceEEEEECCEEcCCCCCHHHcCCCCCC--EEEEE
Confidence 689999999999999999999999999999995 45 889999999999999999999999999776 67764
No 89
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.53 E-value=1.4e-14 Score=88.57 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=60.4
Q ss_pred CEEEEEecCCCEEEEE-eCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC--eecC---CCCcccccCCCCCCc
Q psy5872 1 INLRLILVSGKTKEFL-FSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG--RFLH---SNVTLGALGLTCSKT 74 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~-v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G--k~L~---D~~tL~~~~i~~~~~ 74 (91)
+.|+||+.+|+.. ++ +++++||++||++|++. .+ ++++.|||+|++ |.|+ |+.||++|||.+|+
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~-------~g-i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~- 70 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAI-------TG-IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGD- 70 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHH-------TC-CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTC-
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHH-------hC-CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCC-
Confidence 4689999999654 77 99999999999999995 44 889999999984 8884 68999999999776
Q ss_pred EEEEEEecC
Q psy5872 75 TVMHLVPRE 83 (91)
Q Consensus 75 ~tvhlv~~~ 83 (91)
+||+.-..
T Consensus 71 -~l~v~~~~ 78 (86)
T 2kzr_A 71 -MLIVEEDQ 78 (86)
T ss_dssp -EEECCCCS
T ss_pred -EEEEEeCC
Confidence 68875443
No 90
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=6.7e-14 Score=87.21 Aligned_cols=74 Identities=12% Similarity=0.251 Sum_probs=66.8
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|++++.+|+.+.+.+.++++++.|++.+++. .+ ++++++||+|.|+.|.++.|.++|++.+|+ +||++
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~-------~g-i~~~~~rf~FdG~~l~~~~Tp~dl~medgD--~Idv~ 75 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-------QG-LSMRQIRFRFDGQPINETDTPAQLEMEDED--TIDVF 75 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHH-------TT-CCSTTEEEEETTEECCTTCCTTTTTCCTTE--EEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-------hC-CCcccEEEEECCEEcCCCCCHHHcCCCCCC--EEEEE
Confidence 578999999999999999999999999999996 44 889999999999999999999999999776 68887
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
++..
T Consensus 76 ~~q~ 79 (91)
T 2io0_B 76 QQQT 79 (91)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 7653
No 91
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.48 E-value=1.9e-13 Score=85.24 Aligned_cols=73 Identities=12% Similarity=0.252 Sum_probs=65.9
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|+++..+|+.+.+.+.++++++.|++.+++. .+ ++++++||+|.|+.|.++.|+++|++..|+ +||++
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~-------~g-i~~~~~rf~fdG~~l~~~~Tp~dl~medgD--~Idv~ 87 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-------QG-LSMRQIRFRFDGQPINETDTPAQLEMEDED--TIDVF 87 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-------HT-CCGGGEEEEETTEECCTTCCTTTTTCCTTE--EEEEE
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHH-------hC-CCccceEEEECCEEcCCCCCHHHcCCCCCC--EEEEE
Confidence 578899899999999999999999999999995 44 889999999999999999999999999776 68887
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 88 ~~q 90 (93)
T 2d07_B 88 QQQ 90 (93)
T ss_dssp ECC
T ss_pred eec
Confidence 764
No 92
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.45 E-value=4e-13 Score=81.37 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=62.9
Q ss_pred CEEEEEecCCC-EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 1 INLRLILVSGK-TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 1 i~l~~~~~~g~-~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
|+|+++..+|+ .+.+.+.++++++.|++.+++. .+ ++++++||+|.|+.|.++.|.++|++.+|+ +||+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~-------~g-i~~~~~rf~fdG~~l~~~~Tp~~l~medgD--~Idv 77 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEA-------MG-LSGHKLSFFFDGTKLSGKELPADLGLESGD--LIEV 77 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHH-------HT-CTTCCCEEEETTEECCSCCCHHHHTCCTTC--EEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHH-------hC-CCcccEEEEECCEEcCCCCCHHHcCCCCCC--EEEE
Confidence 57899999996 8999999999999999999995 44 889999999999999999999999999887 5776
No 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=2.7e-13 Score=86.38 Aligned_cols=73 Identities=12% Similarity=0.252 Sum_probs=66.2
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|+++..+|+.+.+.|.+++++..|++.+++. .+ ++++++||+|.|+.|.++.|+++|++.+|+ +||++
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek-------~g-i~~~~~rf~FdG~~l~~~~Tp~dl~medgD--~Idv~ 94 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-------QG-LSMRQIRFRFDGQPINETDTPAQLEMEDED--TIDVF 94 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHH-------HT-CCTTTSCEESSSSBCCTTSCTTTTTCCTTE--EEEEC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHH-------hC-CCcceEEEEECCEEcCCCCCHHHcCCCCCC--EEEEE
Confidence 578999999999999999999999999999995 44 889999999999999999999999999776 68887
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 95 ~~q 97 (104)
T 1wz0_A 95 QQQ 97 (104)
T ss_dssp CCC
T ss_pred Eec
Confidence 765
No 94
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.40 E-value=9.9e-13 Score=84.13 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=65.2
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|+++. +|+.+.+.+.+++++..|++.+++. .+ ++++++||+|.|+.|.++.|.++|++.+|+ +||++
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek-------~g-i~~~~~rF~FdG~rl~~~~Tp~dl~medgD--~Idv~ 100 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-------QG-KEMDSLRFLYDGIRIQADQTPEDLDMEDND--IIEAH 100 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHH-------HT-CCGGGEEEEETTEECCTTCCTTTTTCCTTE--EEEEE
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHH-------hC-CCcccEEEEECCeEcCCCCCHHHcCCCCCC--EEEEE
Confidence 6789999 9999999999999999999999995 44 889999999999999999999999999776 68887
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 101 ~~q 103 (106)
T 2eke_C 101 REQ 103 (106)
T ss_dssp ECC
T ss_pred eec
Confidence 764
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.40 E-value=3.6e-13 Score=86.63 Aligned_cols=73 Identities=11% Similarity=0.271 Sum_probs=66.1
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|+++..+|+.+.+.|.++++++.|++.+++. .+ ++++++||+|.|+.|.++.|+++|++.+|+ +||++
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek-------~g-i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD--~Idv~ 96 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKK-------QG-ISRNSVRFLFDGTPIDETKTPEELGMEDDD--VIDAM 96 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHH-------HT-CCSSSCEEESSSCBCCSSSHHHHHHCSSEE--EEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-------hC-CCcccEEEEECCEEcCCCCCHHHcCCCCCC--EEEEE
Confidence 679999999999999999999999999999995 44 889999999999999999999999999665 68887
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 97 ~~q 99 (110)
T 2k8h_A 97 VEQ 99 (110)
T ss_dssp CCC
T ss_pred Ecc
Confidence 764
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.33 E-value=8.8e-12 Score=77.49 Aligned_cols=72 Identities=11% Similarity=0.057 Sum_probs=59.4
Q ss_pred CEEEEEe---cCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC------ee-c-CCCCcccccCC
Q psy5872 1 INLRLIL---VSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG------RF-L-HSNVTLGALGL 69 (91)
Q Consensus 1 i~l~~~~---~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G------k~-L-~D~~tL~~~~i 69 (91)
|+|+|+. .+|+.++..+++++||++||.+|+... + +++..|||.|.+ .. | +|..+|+.||+
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~-------g-ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i 81 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLL-------K-VPVSELLLSYESSKMPGREIELENDLQPLQFYSV 81 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTT-------T-CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTC
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHH-------C-CChhHeEEEEEcCCCCceeeccCCCcccHhhcCC
Confidence 4677775 467899999999999999999999962 3 899999999983 23 5 78899999999
Q ss_pred CCCCcEEEEEEec
Q psy5872 70 TCSKTTVMHLVPR 82 (91)
Q Consensus 70 ~~~~~~tvhlv~~ 82 (91)
.+|+ +||++..
T Consensus 82 ~~G~--~I~V~d~ 92 (97)
T 1wjn_A 82 ENGD--CLLVRWS 92 (97)
T ss_dssp CTTC--EEEEECC
T ss_pred CCCC--EEEEEec
Confidence 9886 6888653
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.15 E-value=2.7e-10 Score=73.77 Aligned_cols=73 Identities=16% Similarity=0.302 Sum_probs=65.5
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|+++..+|..+.+.+.+++++..|++.++++ .+ ++.+.+||+|.|+.|.++.|.+++++.+|+ +|+++
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er-------~G-l~~~~irFlFDG~rI~~~~TP~dL~MEDgD--~IdV~ 110 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-------QG-VPMNSLRFLFEGQRIADNHTPKELGMEEED--VIEVY 110 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHH-------HT-CCTTSEEEEETTEECCTTCCTTTTTCCTTC--EEEEE
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHH-------hC-CChhhEEEEECCeECCCCCCHHHcCCCCCC--EEEEE
Confidence 688888889999999999999999999999996 44 899999999999999999999999999887 57776
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 111 ~~Q 113 (115)
T 3kyd_D 111 QEQ 113 (115)
T ss_dssp ECC
T ss_pred eec
Confidence 654
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.2e-09 Score=76.59 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=64.9
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|+++ .+|..+.+.+.++++++.|++.++++ +| ++.+++||+|.|+.|.++.|.+++++.+|+ +||++
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er-------~G-i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD--~Idv~ 98 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKR-------QG-KEMDSLRFLYDGIRIQADQTPEDLDMEDND--IIEAH 98 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHH-------HS-SCGGGEEEEETTEECCTTCCTTTTTCCTTE--EEEEE
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHH-------hC-CChhhEEEEECCEEcCCCCCHHHcCCCCCC--EEEEE
Confidence 578886 48999999999999999999999996 55 899999999999999999999999999776 57777
Q ss_pred ecCC
Q psy5872 81 PREN 84 (91)
Q Consensus 81 ~~~~ 84 (91)
++..
T Consensus 99 ~~q~ 102 (200)
T 3pge_A 99 REQI 102 (200)
T ss_dssp ECCS
T ss_pred eccC
Confidence 7653
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.86 E-value=4.4e-09 Score=73.75 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=64.1
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|+++ .+|..+.+.|.+++++..|++..+++ .+ ++++.+||+|.|+.|.++.|.+++++.+|+ +|+++
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcER-------qG-L~~~sIRFLFDGqRI~~ddTPeDLdMEDGD--tIDV~ 126 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKR-------QG-KEMDSLTFLYDGIEIQADQTPEDLDMEDND--IIEAH 126 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHH-------TT-CCGGGSCEEETTEECCSSCCTTTTTCCTTE--EEEEC
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHH-------hC-CCcccEEEEECCeecCCCCCHHHcCCCCCC--EEEEE
Confidence 678886 48999999999999999999999996 44 889999999999999999999999999776 57777
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 127 leQ 129 (207)
T 3tix_A 127 REQ 129 (207)
T ss_dssp CCC
T ss_pred Eec
Confidence 654
No 100
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.61 E-value=1.7e-07 Score=58.62 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=49.4
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecC--CCCcccccCCCCCCcEEEEEEecCC
Q psy5872 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLH--SNVTLGALGLTCSKTTVMHLVPREN 84 (91)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~--D~~tL~~~~i~~~~~~tvhlv~~~~ 84 (91)
++....+.+.+.+||..+|++|++. +| +++++|+|||.||.|. .+..-..|--... ..-+.|.-+.|
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eq-------Tg-Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~-~~Pl~L~s~~~ 90 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQ-------TK-IISSNQELIYEGRRLVLEPGRLAQHFPKTTE-ENPIFVVSLER 90 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHH-------HC-CCGGGEEEEETTEEECCCTTCBGGGSCCCBT-TBCEEEEECCC
T ss_pred cceEEEEEeccchHHHHHHHHHHHH-------hC-CCHHHHHHHhCCCccccCCCCccccCCCCCC-CCCEEEEecCC
Confidence 5688889999999999999999995 55 9999999999998874 3444445544322 23355554544
No 101
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.56 E-value=7.3e-09 Score=73.47 Aligned_cols=72 Identities=15% Similarity=0.255 Sum_probs=0.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|++ ..+|..+.+.+.+++..+.|++..+++ .| ++++.+||+|.|+.|.++.|.+++++.+|+ +|+++
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcER-------qG-Ls~~siRFLFDGqRI~dddTPadL~MEDGD--tIDV~ 90 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR-------QG-KEMDSLRFLYDGIRIQADQTPEDLDMEDND--IIEAH 90 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHH-------hC-CCccceEEEECCEecCCCCCHHHcCCCCCC--EEEEE
Confidence 57888 778899999999999999999999996 44 899999999999999999999999999887 46666
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 91 leQ 93 (227)
T 3v7o_A 91 REQ 93 (227)
T ss_dssp ---
T ss_pred ecc
Confidence 543
No 102
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.52 E-value=6.5e-08 Score=58.48 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=48.0
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCee-----cCCCCcccccCCCCCCc
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRF-----LHSNVTLGALGLTCSKT 74 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~-----L~D~~tL~~~~i~~~~~ 74 (91)
.|+||..+| ++.+++++++|+++|+++|++..+ ++.+.+.+.++-.. +.++.+|+++||+.|+.
T Consensus 6 ~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~--------i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~ 74 (80)
T 2pjh_A 6 IIRVQSPDG-VKRITATKRETAATFLKKVAKEFG--------FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDL 74 (80)
T ss_dssp CCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC--------CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCC
T ss_pred EEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC--------CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCE
Confidence 478999998 455789999999999999999643 45555444333322 34788999999998985
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.43 E-value=1e-06 Score=55.22 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=59.0
Q ss_pred CEEEEEecCCC-EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcE
Q psy5872 1 INLRLILVSGK-TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTT 75 (91)
Q Consensus 1 i~l~~~~~~g~-~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~ 75 (91)
|+|+++.-+|. .+.+.+.++++.+.|....+++ .+ ++++.+||+|.|..|..+.|.+++++.+|+.+
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~-------~g-~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~I 93 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEA-------MG-LSGRKLSFFFDGTKLSGRELPADLGMESGDLI 93 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHH-------TT-CSSSCCEEEETTEECCSCSCHHHHTCCTTEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHH-------HC-CCcccEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 57888888884 8899999999999999999986 23 78899999999999999999999999988753
No 104
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.43 E-value=1.6e-06 Score=52.81 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=58.5
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCC-cEEEEEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKAD-ILRLIYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~-~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
|.|-+|.....-+.+.+.++++|.+|-.....+ .+ ++++ .+||.|-|..|+.+.|+.+|++.+|+. |-+
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~-------~~-I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~--IDv 79 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTE-------VK-ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQ--VSV 79 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHH-------HT-CCCCTTCEEEETTEECCTTSBGGGSSCCTTCE--EEE
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHH-------cC-CCcCceEEEEEcCcccCccCChhhhCCcCCce--eee
Confidence 345566666778889999999999998888875 34 8888 999999999999999999999998885 444
Q ss_pred E
Q psy5872 80 V 80 (91)
Q Consensus 80 v 80 (91)
+
T Consensus 80 m 80 (82)
T 3goe_A 80 V 80 (82)
T ss_dssp E
T ss_pred e
Confidence 4
No 105
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.36 E-value=8.5e-07 Score=61.87 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=62.2
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|+++. +|+.+.+.+..+++...|++..+++ .+ ++.+++||+|.|+.+.+++|.+++++.+++ ++++.
T Consensus 22 i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~-------~g-~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d--~I~~~ 90 (209)
T 3uf8_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-------QG-KEMDSLRFLYDGIRIQADQTPEDLDMEDND--IIEAH 90 (209)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHH-------HT-CCGGGCEEEETTEECCTTCCTTTTTCCTTE--EEEEE
T ss_pred EEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHh-------hC-CChheEEEEECCEeccCCCChHHhhhcccc--cchhh
Confidence 5788876 7788899999999999999999996 45 899999999999999999999999999776 45554
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
.+.
T Consensus 91 ~eq 93 (209)
T 3uf8_A 91 REQ 93 (209)
T ss_dssp CSC
T ss_pred ccc
Confidence 443
No 106
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=98.26 E-value=5.3e-06 Score=49.99 Aligned_cols=67 Identities=22% Similarity=0.204 Sum_probs=54.4
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE--EcCeecC---CCCcccccCCCCCCcEE
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI--YQGRFLH---SNVTLGALGLTCSKTTV 76 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI--~~Gk~L~---D~~tL~~~~i~~~~~~t 76 (91)
.|.||+.+|..+.-.|..++||.+|...|... + .+....+|+ |-.|.|. .+.||+++|+.+.+ +
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~--------~-~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a--~ 77 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVASK--------G-FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQE--T 77 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHT--------T-CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEE--E
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHc--------C-CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCC--E
Confidence 68999999999999999999999999999984 2 356777887 4468883 47999999998554 4
Q ss_pred EEE
Q psy5872 77 MHL 79 (91)
Q Consensus 77 vhl 79 (91)
+++
T Consensus 78 L~v 80 (84)
T 3qx1_A 78 LFL 80 (84)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 107
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.26 E-value=2.7e-06 Score=51.81 Aligned_cols=72 Identities=11% Similarity=0.228 Sum_probs=59.4
Q ss_pred CEEEEEe--cCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcE
Q psy5872 1 INLRLIL--VSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTT 75 (91)
Q Consensus 1 i~l~~~~--~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~ 75 (91)
|+++|.+ ..|+++.+.++-..||++|++.+.+.+.-.. .+..-.++|+...|.+|.++++|++|+|.+|+..
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~---~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~L 78 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSM---PPREGHWIRVVNKDKVFSGECKLSDCGITNGDRL 78 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCS---CCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCc---CCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEE
Confidence 5777776 6889999999999999999999999764331 1122258999999999999999999999999853
No 108
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.23 E-value=1.5e-07 Score=70.95 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=0.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|+++. +|+.+.+.+..+++.+.|++..+++ .| ++++.+||+|.|+.|.++.|.+++++++|+. |+++
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r-------~G-~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~--Idv~ 90 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-------QG-KEMDSLRFLYDGIRIQADQTPEDLDMEDNDI--IEAH 90 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHH-------hC-CCcceEEEEECCeECCCCCChHHcCCCccch--hhhh
Confidence 6788876 7788899999999999999999996 44 8899999999999999999999999998884 6665
Q ss_pred ecC
Q psy5872 81 PRE 83 (91)
Q Consensus 81 ~~~ 83 (91)
++.
T Consensus 91 ~~Q 93 (360)
T 3ix6_A 91 REQ 93 (360)
T ss_dssp ---
T ss_pred hcc
Confidence 554
No 109
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.07 E-value=2.3e-05 Score=49.05 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=61.9
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
|+|+++. .|..+-+.+-.++-.+-|.+..+++ .| .+++.+|++|.|..+.++.|-+++++..|+.+=+|+
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r-------~g-v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATH-------LG-VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHH-------HT-SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhh-------cC-CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 6889984 7899999999999999999999885 45 899999999999999999999999999888655544
No 110
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.01 E-value=7.2e-07 Score=66.68 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=0.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLV 80 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv 80 (91)
|+|+++. +|..+.+.+..+++.+.|++..+++ .+ .+..++||+|.|+.|.++.|.+++++.+|+. |+++
T Consensus 31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~-------~g-~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~--i~~~ 99 (389)
T 4da1_A 31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-------QG-KEMDSLRFLYDGIRIQADQAPEDLDMEDNDI--IEAH 99 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEECCCChHHHHHHHHHHH-------hC-CCcceEEEEECCEEcCCCCCHHHcCCCCCCE--eeee
Confidence 6788877 7788889999999999999999996 34 8999999999999999999999999998885 4544
Q ss_pred ec
Q psy5872 81 PR 82 (91)
Q Consensus 81 ~~ 82 (91)
+.
T Consensus 100 ~~ 101 (389)
T 4da1_A 100 RE 101 (389)
T ss_dssp --
T ss_pred ec
Confidence 43
No 111
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.92 E-value=9.7e-06 Score=53.18 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=51.7
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCC----CCCc-------------------------ccccCCCCcEEEE
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWP----EDWS-------------------------DEAVAKADILRLI 52 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p----~~~~-------------------------~~~~~~~~~qrLI 52 (91)
.|+|++++|...++.|+.+.||.+++..|....+ ++|+ ++.......+||-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 3899999999999999999999999999998621 1110 0000000244552
Q ss_pred E--cCeecCCCCcccccCCCCCCc
Q psy5872 53 Y--QGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 53 ~--~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
. .+..|+++.||.++||.+++.
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~t 116 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHET 116 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCE
Confidence 1 357889999999999998873
No 112
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.89 E-value=0.00023 Score=44.96 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=54.3
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE--EcCeecC--C-CCcccccCCCCCCcEE
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI--YQGRFLH--S-NVTLGALGLTCSKTTV 76 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI--~~Gk~L~--D-~~tL~~~~i~~~~~~t 76 (91)
.|.||+.+|.++.-.|..++||.+|.+.|.... + .+.....|+ |--|.|. | ++||+++|+.+. .+
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~-------~-~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~ps--a~ 84 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTV-------G-NTYGNFSLATMFPRREFTREDYKRRLLDLELAPS--AS 84 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHH-------T-TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSE--EE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcc-------C-CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCc--eE
Confidence 689999999999999999999999999999851 1 233455665 4567775 4 789999999854 35
Q ss_pred EEEEec
Q psy5872 77 MHLVPR 82 (91)
Q Consensus 77 vhlv~~ 82 (91)
+++...
T Consensus 85 L~v~~~ 90 (109)
T 2dzk_A 85 VVLLPA 90 (109)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 665443
No 113
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.84 E-value=6.2e-05 Score=48.73 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=54.0
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE--EcCeec--CC-CCcccccCCCCCCcEE
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI--YQGRFL--HS-NVTLGALGLTCSKTTV 76 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI--~~Gk~L--~D-~~tL~~~~i~~~~~~t 76 (91)
.|.||+.+|.++.-.|..++||.+|...|... + .+.....|+ |-.|.| +| +.||+++|+.+.. +
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~--------~-~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa--~ 113 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK--------G-YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQE--T 113 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH--------H-CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSB--C
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc--------C-CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCce--E
Confidence 68999999999999999999999999999873 2 445667776 458888 44 7999999998654 3
Q ss_pred EEE
Q psy5872 77 MHL 79 (91)
Q Consensus 77 vhl 79 (91)
+++
T Consensus 114 Liv 116 (124)
T 1wj4_A 114 VFV 116 (124)
T ss_dssp CEE
T ss_pred EEE
Confidence 444
No 114
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.79 E-value=0.00012 Score=47.45 Aligned_cols=63 Identities=25% Similarity=0.319 Sum_probs=51.5
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE--EcCeecCC-CCcccccCCCC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI--YQGRFLHS-NVTLGALGLTC 71 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI--~~Gk~L~D-~~tL~~~~i~~ 71 (91)
.|.||+.+|.++.-.|..++||.+|.+.|....|+ .......|+ |-.|.|+| +.||+++|+.+
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~-------~~~~~f~L~t~fPrk~l~d~~~TL~eagL~p 119 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA-------MAATSFVLMTTFPNKELADENQTLKEANLLN 119 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSG-------GGTSCEEEEETTTTEECCSTTCBHHHHTCSS
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcC-------CCCCCeEEecCCCCCCCCCCCCcHHHCCCcC
Confidence 68999999999999999999999999999986331 234556676 45788865 79999999985
No 115
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.69 E-value=0.00031 Score=44.26 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=54.6
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE--EcCeecC--CCCcccccCCCCCCcEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI--YQGRFLH--SNVTLGALGLTCSKTTV 76 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI--~~Gk~L~--D~~tL~~~~i~~~~~~t 76 (91)
+.|.||+.+|.++.-.|..++||.+|...|... + ......+|+ |-.|.|. .+.||+++|+.+.. +
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~--------~-~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a--~ 92 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV--------G-YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDT--V 92 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH--------T-CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCE--E
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc--------C-CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCe--E
Confidence 368999999999999999999999999999974 1 334566775 4477785 37999999998543 5
Q ss_pred EEEEe
Q psy5872 77 MHLVP 81 (91)
Q Consensus 77 vhlv~ 81 (91)
|++.-
T Consensus 93 L~Ve~ 97 (109)
T 2cr5_A 93 LNVEE 97 (109)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 65543
No 116
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.34 E-value=0.0017 Score=47.84 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=51.4
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEE------cCeecCCCCcccccCCCCCC
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIY------QGRFLHSNVTLGALGLTCSK 73 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~------~Gk~L~D~~tL~~~~i~~~~ 73 (91)
+.|+|..+ +.+.++.|+|++||.++..+|.+..|+.. ..+.++=-|.- .|+-|++.+||+.|++++|+
T Consensus 4 ~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~----~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~ 77 (371)
T 3ivf_A 4 LSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEAL----AGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGD 77 (371)
T ss_dssp EEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGG----SSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTC
T ss_pred EEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhccccc----CCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCc
Confidence 35788777 88999999999999999999999987520 01222223322 37889999999999998775
No 117
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.84 E-value=0.0039 Score=39.81 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=44.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHhhcCCCC--CcccccCCCCcEEEEE----cCeecCCCC-------------cccccCCC
Q psy5872 10 GKTKEFLFSPSDSAGDIAQHVFDNWPED--WSDEAVAKADILRLIY----QGRFLHSNV-------------TLGALGLT 70 (91)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~p~~--~~~~~~~~~~~qrLI~----~Gk~L~D~~-------------tL~~~~i~ 70 (91)
+..+++.+-..+||.++|++|.+.+=.+ |+ .. +.++++.|=+ +|++|.|.. ||+.|+|+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS-~r-P~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 100 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCS-CW-PRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVR 100 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC-----------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCC
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccc-cC-CCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCC
Confidence 4678888889999999999999863112 11 01 2367888866 357776632 68889999
Q ss_pred CCCcEEEEEE
Q psy5872 71 CSKTTVMHLV 80 (91)
Q Consensus 71 ~~~~~tvhlv 80 (91)
+|. +|-|+
T Consensus 101 dga--tl~l~ 108 (111)
T 4e71_A 101 DGA--TLILS 108 (111)
T ss_dssp TTC--EEEEE
T ss_pred CCC--EEEEE
Confidence 776 45554
No 118
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=96.70 E-value=0.017 Score=37.70 Aligned_cols=70 Identities=10% Similarity=0.163 Sum_probs=47.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHhhcCCCC--CcccccCCCCcEEEEE----cCe-ecCCC-------------CcccccCC
Q psy5872 10 GKTKEFLFSPSDSAGDIAQHVFDNWPED--WSDEAVAKADILRLIY----QGR-FLHSN-------------VTLGALGL 69 (91)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~p~~--~~~~~~~~~~~qrLI~----~Gk-~L~D~-------------~tL~~~~i 69 (91)
+..+++.+-..+||.++|++|.+.+=.+ |+ .. +.++++.|=+ .|+ +|.|. .||+.|+|
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S-~r-P~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V 93 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKNVPYS-QW-PRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI 93 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTTSCGG-GS-CCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhccCCcc-cC-CCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence 4668888888999999999999863222 11 11 3468888877 344 37652 25889999
Q ss_pred CCCCcEEEEEEecC
Q psy5872 70 TCSKTTVMHLVPRE 83 (91)
Q Consensus 70 ~~~~~~tvhlv~~~ 83 (91)
++|. +|-|+.+.
T Consensus 94 ~dga--tv~l~~~~ 105 (127)
T 3h6n_A 94 PEGA--SLAMSLID 105 (127)
T ss_dssp CTTC--EEEEEECC
T ss_pred CCCC--EEEEEEcc
Confidence 9776 56665443
No 119
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.67 E-value=0.015 Score=35.88 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=61.1
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEe
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVP 81 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~ 81 (91)
.+.++..+|+...+.+.|++|+.++=+.-.+. .+ +++++-.|-|.+|.|+=+..++=.|+.+|. .+-|+.
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K-------~g-l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnA--kLELv~ 80 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRR-------QD-FNPSEYDLKFQRTVLDLSLQWRFANLPNNA--KLEMVP 80 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHH-------TT-CCGGGCEEEETTEEESSSCBHHHHCCCSSC--EEEEEC
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHH-------hC-CChhhCeEEeCCEeccccceeEecCCCCCC--EEEEEE
Confidence 36788889999999999999999964444443 23 677888999999999889999999999776 577787
Q ss_pred cCCCCC
Q psy5872 82 RENLPE 87 (91)
Q Consensus 82 ~~~~p~ 87 (91)
.++.|.
T Consensus 81 ~s~s~~ 86 (90)
T 2al3_A 81 VSRSRE 86 (90)
T ss_dssp SSSCC-
T ss_pred ccCCCc
Confidence 776664
No 120
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.50 E-value=0.018 Score=38.03 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=47.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcCCCC--CcccccCCCCcEEEEE----cCee-cCCC--C-----------cccccCCC
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNWPED--WSDEAVAKADILRLIY----QGRF-LHSN--V-----------TLGALGLT 70 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~p~~--~~~~~~~~~~~qrLI~----~Gk~-L~D~--~-----------tL~~~~i~ 70 (91)
..+++.|-..+||.++|+||.+..=.+ |++ - +.++++-|=+ +|++ |.|. . ||+.|+|+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySq-R-P~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~ 118 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQ-R-PDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVP 118 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGG-C-CCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCC
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCcccc-C-CCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCC
Confidence 578899989999999999999862222 111 1 3567777765 3554 7653 2 79999999
Q ss_pred CCCcEEEEEEecC
Q psy5872 71 CSKTTVMHLVPRE 83 (91)
Q Consensus 71 ~~~~~tvhlv~~~ 83 (91)
+|. +|-|+-+.
T Consensus 119 Dga--~l~l~~~~ 129 (138)
T 2r2o_A 119 DGA--TVALVPCL 129 (138)
T ss_dssp TTC--EEEEEEC-
T ss_pred CCC--EEEEEECC
Confidence 776 56666554
No 121
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=95.30 E-value=0.077 Score=34.02 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=46.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcCCCC--CcccccCCCCcEEEEE-cC---e-ecCCC-------------CcccccCCC
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNWPED--WSDEAVAKADILRLIY-QG---R-FLHSN-------------VTLGALGLT 70 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~p~~--~~~~~~~~~~~qrLI~-~G---k-~L~D~-------------~tL~~~~i~ 70 (91)
..+++.+-..+||.++|++|.+.+=.+ |+ .. +.++++.|=+ .| + +|.|. .||+.|+|+
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S-~r-P~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 104 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCS-HR-PKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVP 104 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGG-GS-CCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCC
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcc-cC-CCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCC
Confidence 457888888999999999999863222 11 11 3467888866 34 3 36552 258889999
Q ss_pred CCCcEEEEEEecC
Q psy5872 71 CSKTTVMHLVPRE 83 (91)
Q Consensus 71 ~~~~~tvhlv~~~ 83 (91)
+|. +|-|+.+.
T Consensus 105 dga--tl~l~~~~ 115 (117)
T 4e74_A 105 DGS--VVALVSKQ 115 (117)
T ss_dssp TTC--EEEEEECC
T ss_pred CCC--EEEEEeCC
Confidence 776 56666554
No 122
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.53 E-value=0.33 Score=33.81 Aligned_cols=55 Identities=20% Similarity=0.162 Sum_probs=42.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCC-cEEEEE-c----CeecCC-CCcccccCCCCCCc
Q psy5872 12 TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKAD-ILRLIY-Q----GRFLHS-NVTLGALGLTCSKT 74 (91)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~-~qrLI~-~----Gk~L~D-~~tL~~~~i~~~~~ 74 (91)
.+++.+...+||.+|++.+.... .++.+ ..||-. . ...|.| +.||+++++..+..
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~--------~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~ 214 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLF--------NIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQV 214 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHT--------TCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEE
T ss_pred eEEEEecccCcHHHHHHHHHHHh--------CCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCE
Confidence 35577899999999999999963 26665 689854 2 346665 69999999997764
No 123
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=94.28 E-value=0.3 Score=33.66 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=42.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCC-cEEEE--Ec---CeecCC-CCcccccCCCCCCcEE
Q psy5872 12 TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKAD-ILRLI--YQ---GRFLHS-NVTLGALGLTCSKTTV 76 (91)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~-~qrLI--~~---Gk~L~D-~~tL~~~~i~~~~~~t 76 (91)
..++.+...+||.+|++.+.+.. + ++.+ ..||- |. ...|+| +.||+++++.++..+.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~-------~-i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~il 204 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIF-------S-IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLV 204 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHT-------T-CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEE
T ss_pred ceEEEEcccchHHHHHHHHHHHh-------C-CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEE
Confidence 35678899999999999999963 2 6665 68883 31 345555 6899999999887433
No 124
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=93.46 E-value=0.42 Score=38.37 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=45.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcCCCC--CcccccCCCCcEEEEE----cCe-ecCCCC-------------cccccCCC
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNWPED--WSDEAVAKADILRLIY----QGR-FLHSNV-------------TLGALGLT 70 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~p~~--~~~~~~~~~~~qrLI~----~Gk-~L~D~~-------------tL~~~~i~ 70 (91)
..+++.|-..+||.++|++|.+..=.+ |++ . +.++++.|=+ .|+ +|.|.+ ||+.|+|+
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~-r-P~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 351 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQ-R-PDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVP 351 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGG-S-CCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCC
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCccc-C-CCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCC
Confidence 457788888999999999999751111 211 1 3467777766 244 466643 79999999
Q ss_pred CCCcEEEEEEecC
Q psy5872 71 CSKTTVMHLVPRE 83 (91)
Q Consensus 71 ~~~~~tvhlv~~~ 83 (91)
+|. +|-|+-+.
T Consensus 352 dga--~v~L~p~~ 362 (644)
T 3hm6_X 352 DGA--TVALVPCL 362 (644)
T ss_dssp TTC--EEEEEEC-
T ss_pred CCc--EEEEEecc
Confidence 776 56565443
No 125
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=92.53 E-value=0.33 Score=30.14 Aligned_cols=59 Identities=8% Similarity=0.116 Sum_probs=42.0
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEE------EEcCeecCCCCccccc
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRL------IYQGRFLHSNVTLGAL 67 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrL------I~~Gk~L~D~~tL~~~ 67 (91)
.++|-..+|....+.|++++|++++-+.+++.- .......=-| ++.-|.++|.+.|-+.
T Consensus 11 vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~-------~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 11 VVKVYSEDGACRSVEVAAGATARHVCEMLVQRA-------HALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp EEEEEETTSCEEEEEECTTCCHHHHHHHHHCSS-------SCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHHHHHHHc-------CCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 478888999999999999999999999999952 1111111111 1345788998776655
No 126
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=92.44 E-value=1.2 Score=31.19 Aligned_cols=74 Identities=18% Similarity=0.324 Sum_probs=51.6
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEc---C--eecCCCCcccccCCCCCCcE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQ---G--RFLHSNVTLGALGLTCSKTT 75 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~---G--k~L~D~~tL~~~~i~~~~~~ 75 (91)
|.+++.+++| +.++.+++++|+++|=+.|.+.. +-...+..=|.|. | ..|+.++.+.+.+++.+...
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l-------~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~ 73 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTI-------GLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPL 73 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHH-------TCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHc-------CCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCE
Confidence 5688889998 78899999999999999999852 2123344445442 3 35677888888776656665
Q ss_pred EEEEEec
Q psy5872 76 VMHLVPR 82 (91)
Q Consensus 76 tvhlv~~ 82 (91)
.+++-++
T Consensus 74 ~l~fr~k 80 (294)
T 1ef1_A 74 LFKFRAK 80 (294)
T ss_dssp EEEEEES
T ss_pred EEEEEEE
Confidence 6665443
No 127
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=92.37 E-value=0.68 Score=29.99 Aligned_cols=63 Identities=11% Similarity=0.218 Sum_probs=40.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcC----CCCCcccccCCCCcEEEEE-c---CeecCCC--------------CcccccC
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNW----PEDWSDEAVAKADILRLIY-Q---GRFLHSN--------------VTLGALG 68 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~----p~~~~~~~~~~~~~qrLI~-~---Gk~L~D~--------------~tL~~~~ 68 (91)
..+++.+-..+||.++|++|.+.+ +--|+ ..++++.|=+ . |++|.|. .||+.|+
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys----~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~ 114 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYG----LQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYE 114 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCS----SCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCC----CCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccC
Confidence 468888889999999999998852 22221 1356677755 2 3355331 2467789
Q ss_pred CCCCCcEEEEE
Q psy5872 69 LTCSKTTVMHL 79 (91)
Q Consensus 69 i~~~~~~tvhl 79 (91)
|++|. +|-+
T Consensus 115 V~Dga--tlal 123 (126)
T 3kuz_A 115 ISNGS--TIKV 123 (126)
T ss_dssp CCTTC--EEEE
T ss_pred CCCCC--EEEE
Confidence 98776 4544
No 128
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=91.56 E-value=0.096 Score=32.48 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=42.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCC----cEEEEEcC-eecCC------CCcccccCCCCCCcEEEEE
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKAD----ILRLIYQG-RFLHS------NVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~----~qrLI~~G-k~L~D------~~tL~~~~i~~~~~~tvhl 79 (91)
....+++++++|..+|-+.+.+.-.-.+.+.+ +... .-.|..++ ..|+. +++|.++|+.+|+. ||+
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PS-ltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~e--i~V 81 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPA-ITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQE--LAV 81 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCE-EEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCE--EEE
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCCe-eeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCE--EEE
Confidence 45678999999999999999995211222222 3222 44554444 35543 57799999998875 554
No 129
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=91.40 E-value=1.6 Score=30.88 Aligned_cols=74 Identities=12% Similarity=0.224 Sum_probs=51.7
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEE--cC--eecCCCCcccccCCCCCCcEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIY--QG--RFLHSNVTLGALGLTCSKTTV 76 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~--~G--k~L~D~~tL~~~~i~~~~~~t 76 (91)
+.+++.+++| ++.+.+++++|+.+|=+.|.+.. +-...+..=|.| .| ..|+.++.|.+.+++.+....
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l-------~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~ 94 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTL-------GLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVT 94 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHH-------TCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHh-------CCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEE
Confidence 3578888999 88899999999999999999852 212334444544 33 247778888887766556656
Q ss_pred EEEEec
Q psy5872 77 MHLVPR 82 (91)
Q Consensus 77 vhlv~~ 82 (91)
+++-++
T Consensus 95 l~fr~k 100 (314)
T 1h4r_A 95 FHFLAK 100 (314)
T ss_dssp EEEEES
T ss_pred EEEEEE
Confidence 665443
No 130
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=91.34 E-value=1.5 Score=35.11 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=45.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcCCCC--CcccccCCCCcEEEEE----cCe-ecCCC-------------CcccccCCC
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNWPED--WSDEAVAKADILRLIY----QGR-FLHSN-------------VTLGALGLT 70 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~p~~--~~~~~~~~~~~qrLI~----~Gk-~L~D~-------------~tL~~~~i~ 70 (91)
..+++.|-..+||.++|++|.+..=.+ |+ .. +.++++.|=+ .|+ +|.|. .||+.|+|+
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS-~r-P~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 324 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYS-QR-PKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVT 324 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGG-GS-CCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCC
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcc-cC-CCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCC
Confidence 578888889999999999999852111 21 11 4577888865 344 35542 268999999
Q ss_pred CCCcEEEEEEecC
Q psy5872 71 CSKTTVMHLVPRE 83 (91)
Q Consensus 71 ~~~~~tvhlv~~~ 83 (91)
+|. +|-|+-+.
T Consensus 325 Dga--~v~L~p~~ 335 (627)
T 3ig3_A 325 DGS--LVALVPKQ 335 (627)
T ss_dssp TTC--EEEEEEC-
T ss_pred CCc--eEEEEecc
Confidence 776 56665544
No 131
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=90.84 E-value=0.36 Score=30.44 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=30.3
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
|.|.+.+.+|-.+.+++..+.|+.++|+.++++
T Consensus 20 v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 20 ILVECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 468899999999999999999999999999985
No 132
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=90.39 E-value=2 Score=33.65 Aligned_cols=74 Identities=9% Similarity=0.195 Sum_probs=53.2
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC-----eecCCCCcccccCCCCCCcE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG-----RFLHSNVTLGALGLTCSKTT 75 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G-----k~L~D~~tL~~~~i~~~~~~ 75 (91)
|.++|.+++| ++.+.+++++|+.+|=..|.... +-...+..=|.|.. ..|+.++++.+.+++.+.+.
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~L-------gL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~ 76 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTI-------GLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPL 76 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHH-------TCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHc-------CCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCe
Confidence 4678888998 78899999999999999999852 21233445555532 46777888888877666666
Q ss_pred EEEEEec
Q psy5872 76 VMHLVPR 82 (91)
Q Consensus 76 tvhlv~~ 82 (91)
.+++-++
T Consensus 77 ~L~FRvk 83 (575)
T 2i1j_A 77 QFKFRAK 83 (575)
T ss_dssp EEEEEES
T ss_pred EEEEEEE
Confidence 6766544
No 133
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=88.83 E-value=0.59 Score=30.31 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=39.2
Q ss_pred EEEEEeCC----CCcHHHHHHHHhhcCCCCCcccccCC-CCcEEEEEcCeecCC-CCcccccCCCCCCcEE
Q psy5872 12 TKEFLFSP----SDSAGDIAQHVFDNWPEDWSDEAVAK-ADILRLIYQGRFLHS-NVTLGALGLTCSKTTV 76 (91)
Q Consensus 12 ~~~~~v~~----~~TV~~lK~~I~~~~p~~~~~~~~~~-~~~qrLI~~Gk~L~D-~~tL~~~~i~~~~~~t 76 (91)
...+.+++ ..|.++|-+.+.+.+. |+.+-.+. .+.+||||-=-+=++ +++|+++|++.|++.+
T Consensus 7 Rgvl~v~~~dl~~~TL~dLV~~l~~~~g--y~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLt 75 (127)
T 3onh_A 7 RGVIKLSSDCLNKMKLSDFVVLIREKYS--YPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIIL 75 (127)
T ss_dssp EEEEEECHHHHHHCBHHHHHHHHHHHHT--CCSSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEE
T ss_pred EEEEEeCcccccccCHHHHHHHHHHhcC--CCCcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEE
Confidence 44566764 4688888777766421 11111122 357888887654433 7999999999776533
No 134
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=88.74 E-value=2.4 Score=25.59 Aligned_cols=59 Identities=14% Similarity=0.225 Sum_probs=45.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCee--cCCCCcccccCCCCCC
Q psy5872 12 TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRF--LHSNVTLGALGLTCSK 73 (91)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~--L~D~~tL~~~~i~~~~ 73 (91)
..-+-+|..+|+.++-++++..- .+..-...+.-+|.-++|+. |.++.|+++.||++=+
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~---VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme 76 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHC---VNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTE 76 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTT---BTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTC
T ss_pred EEEEEecCCCcHHHHHHHHhhhh---cceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcce
Confidence 45578999999999999999841 01111123458999999999 9999999999998665
No 135
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=88.55 E-value=1.5 Score=26.28 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=33.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCe
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGR 56 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk 56 (91)
.++.+.+.++.+..+|.++|+++.+ .+++..+|-|.-.
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~--------l~~~~~~LsYk~~ 51 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLE--------LRLEHTKLSYRPR 51 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTT--------CCGGGCCEEECCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC--------CCcceeEEEeeCC
Confidence 7999999999999999999999742 6688899999764
No 136
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=86.52 E-value=2.5 Score=25.54 Aligned_cols=30 Identities=0% Similarity=0.126 Sum_probs=26.0
Q ss_pred EEEec-CCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 4 RLILV-SGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 4 ~~~~~-~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
++|.. .+..+.+.++++.+..+||.+|.++
T Consensus 14 KVK~yy~DDIiAIrvP~di~~~~L~dKi~~R 44 (85)
T 1ip9_A 14 KIKFYYKDDIFALMLKGDTTYKELRSKIAPR 44 (85)
T ss_dssp EEEECBTTCCEEEEECSCCCHHHHHHHHHHH
T ss_pred EEEEEecCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44444 6689999999999999999999997
No 137
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=85.09 E-value=1.5 Score=31.15 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=49.3
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEc---C--eecCCCCcccccCCCCCCcE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQ---G--RFLHSNVTLGALGLTCSKTT 75 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~---G--k~L~D~~tL~~~~i~~~~~~ 75 (91)
+.+++.+++|...++++++++|+.+|=+.|.+.. +-...+..=|.|. | +.|+.++.+.+... +...
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l-------~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~--~~~~ 88 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHL-------NLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVR--GVPW 88 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHH-------TCSSGGGEEEEEEEETTEEEECCTTSBHHHHC-----CC
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHc-------CCCCcceeEEEEEcCCCccchhccchhHHHhcC--CCCc
Confidence 5688999999999999999999999999999952 2123344444443 2 45677777776543 2344
Q ss_pred EEEEEec
Q psy5872 76 VMHLVPR 82 (91)
Q Consensus 76 tvhlv~~ 82 (91)
++++-++
T Consensus 89 ~l~frvk 95 (296)
T 3qij_A 89 NFTFNVK 95 (296)
T ss_dssp EEEEEES
T ss_pred EEEEEEE
Confidence 5665444
No 138
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=84.71 E-value=4.1 Score=23.55 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=39.2
Q ss_pred CC-CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCC-----CCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 9 SG-KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAK-----ADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 9 ~g-~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~-----~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
.| ....++++...||++|.+.+.+.+|+ +...- .. .....+.-.|+....+ .-+++|+.
T Consensus 15 ~g~~~~~~~~~~~~Tv~~ll~~L~~~~p~-~~~~~-l~~~g~l~~~~~v~VN~~~v~~~-----~~l~~gDe 79 (89)
T 3po0_A 15 AGSRTVRVDVDGDATVGDALDALVGAHPA-LESRV-FGDDGELYDHINVLRNGEAAALG-----EATAAGDE 79 (89)
T ss_dssp HTCSEEEEECCTTCBHHHHHHHHHHHCGG-GHHHH-BCTTSCBCTTSEEEETTEECCTT-----SBCCTTCE
T ss_pred hCCCeEEEECCCCCcHHHHHHHHHHHCcH-HHHHH-hccCCcccccEEEEECCEECCCC-----cccCCCCE
Confidence 45 67788998889999999999998763 21000 11 1235677788887653 34677774
No 139
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=84.30 E-value=8.5 Score=27.87 Aligned_cols=70 Identities=17% Similarity=0.287 Sum_probs=49.0
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC---------eecCCCCcccccCCCCC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG---------RFLHSNVTLGALGLTCS 72 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G---------k~L~D~~tL~~~~i~~~ 72 (91)
.+++.+++|....+.+++++|+.+|=+.|.+.. +-...+..-|.+.. +.|+-++++.+-+..+
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l-------~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~- 158 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARI-------GITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEE- 158 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHT-------TCSCGGGEEEECCC----------CCCTTSBTGGGTCCT-
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHc-------CCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCC-
Confidence 578899999999999999999999999999963 21234555555432 4556677777766643
Q ss_pred CcEEEEEE
Q psy5872 73 KTTVMHLV 80 (91)
Q Consensus 73 ~~~tvhlv 80 (91)
..++++-
T Consensus 159 -~~~l~fr 165 (371)
T 3ivf_A 159 -HETLLLR 165 (371)
T ss_dssp -TCEEEEE
T ss_pred -CceEEEE
Confidence 3356653
No 140
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=84.05 E-value=7.1 Score=33.12 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=54.2
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc---CCCCCcccccCCCCcEEEEEcCe-----ec-CCCCcccccCCCC
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN---WPEDWSDEAVAKADILRLIYQGR-----FL-HSNVTLGALGLTC 71 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~---~p~~~~~~~~~~~~~qrLI~~Gk-----~L-~D~~tL~~~~i~~ 71 (91)
|.|.|.+++|-.+.+++..+.|++++|+.|+++ .|--. .-..+++-.+.+-.+ .+ ++.+-|.++..-
T Consensus 52 v~vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~A~~~pl~~---~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~~~- 127 (1092)
T 2y3a_A 52 ISVDFLLPTGIYIQLEVPREATISYIKQMLWKQVHNYPMFN---LLMDIDSYMFACVNQTAVYEELEDETRRLCDVRPF- 127 (1092)
T ss_dssp EEEEEECTTCCEEEEEEETTCBHHHHHHHHHHHGGGSTTTT---SCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGCBS-
T ss_pred eEEEEECCCceEEEEEecCcccHHHHHHHHHHHHHhCCchh---ccCCcceeEEEEecCCceEEEeecCceeeEeeccc-
Confidence 468899999999999999999999999999985 22110 112355666666333 25 456888887654
Q ss_pred CCcEEEEEEecCC
Q psy5872 72 SKTTVMHLVPREN 84 (91)
Q Consensus 72 ~~~~tvhlv~~~~ 84 (91)
.-.+.++-+..
T Consensus 128 --~p~l~lve~~~ 138 (1092)
T 2y3a_A 128 --LPVLKLVTRSC 138 (1092)
T ss_dssp --SSCEEEEESCC
T ss_pred --ceEEEEEecCC
Confidence 22578777643
No 141
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=83.91 E-value=3.8 Score=24.85 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=46.2
Q ss_pred EEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEEEecC
Q psy5872 13 KEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVPRE 83 (91)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhlv~~~ 83 (91)
+.-+++-...++.||+.++.+. + ++-+.-.+-.++..|+++++|.+-+++-....-+.+=+.+
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl-------~-i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik~ 67 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRL-------Q-CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVIS 67 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-------C-SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEEC
T ss_pred hhhhccccCcHHHHHHHHHHHh-------c-CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEEe
Confidence 4456777889999999999973 2 6666677777899999999999999984443333333333
No 142
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=83.26 E-value=5.5 Score=23.90 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=44.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc-CCCCCcccccCCCCcEEEEEcC--eecCCCCcccccCCCCCC
Q psy5872 12 TKEFLFSPSDSAGDIAQHVFDN-WPEDWSDEAVAKADILRLIYQG--RFLHSNVTLGALGLTCSK 73 (91)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~~~~~~~~qrLI~~G--k~L~D~~tL~~~~i~~~~ 73 (91)
..-+-++..+|+.++-++++.. -.... .+.+..-+|..+.| +.|..+.|+++.||.+=+
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV---~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e 75 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRV---HPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTE 75 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTB---CCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTC
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceec---CCCCCCeEEEEecCCccCCCCCCEeeccCCCCce
Confidence 4557899999999999999984 11110 01233468899999 999999999999998655
No 143
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=81.34 E-value=6.9 Score=27.99 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=39.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCe-ecCC-CCcccccCCC
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGR-FLHS-NVTLGALGLT 70 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk-~L~D-~~tL~~~~i~ 70 (91)
....+.+.+..|+.++++.+++. ..++++.|.|+|.|. +.-| ......|.-.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~--------t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~ 375 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQ--------TKIISSNQELIYEGRRLVLEPGRLAQHFPKT 375 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHH--------HCCCSTTEEEESSSSEECCCSSCBTTSSCCC
T ss_pred eEEEEEcCchhHHHHHHHHHHHh--------cCCChhhhHHHhcCCCCCCCCCCccccCCCC
Confidence 56667888999999999999995 338999999999994 4444 4555555543
No 144
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=79.55 E-value=5.1 Score=22.98 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=35.9
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNV 62 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~ 62 (91)
+++++........++++++.||++|=+.+. ++++..-....|+.+..+.
T Consensus 2 ~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~Lg------------l~~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 2 NVTVEVVGEETSEVAVDDDGTYADLVRAVD------------LSPHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp EEEEECSSSSEEEEECSTTCSHHHHHHTTC------------CCSSCCCEECCCCCCCTTS
T ss_pred EEEEEEeCccceeEEcCCCCcHHHHHHHcC------------CCcceEEEEECCEECCHHH
Confidence 577877744677799999999998855432 5666666778999885554
No 145
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=75.03 E-value=8.7 Score=21.41 Aligned_cols=51 Identities=8% Similarity=-0.001 Sum_probs=36.0
Q ss_pred ecCCC--EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 7 LVSGK--TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 7 ~~~g~--~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
+++|+ ..+++++...||.+|.+.+.- +.....+...|.++..+. -+++|+.
T Consensus 8 ~vNg~~~~~~~~~~~~~tv~~Ll~~l~~------------~~~~v~vavN~~~v~~~~-----~L~~gD~ 60 (70)
T 1ryj_A 8 TVITDDGKKILESGAPRRIKDVLGELEI------------PIETVVVKKNGQIVIDEE-----EIFDGDI 60 (70)
T ss_dssp EEEETTEEEEEEESSCCBHHHHHHHTTC------------CTTTEEEEETTEECCTTS-----BCCTTCE
T ss_pred EEeCccCceeEECCCCCcHHHHHHHhCC------------CCCCEEEEECCEECCCcc-----cCCCCCE
Confidence 34553 456788888999999988743 345567889999996655 4566764
No 146
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=73.85 E-value=4 Score=22.81 Aligned_cols=52 Identities=8% Similarity=0.242 Sum_probs=35.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
....++++...||++|.+.+...+|+ + .. + ...+...|+....+ .-+++|+.
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~--~~-v---~~~v~vNg~~v~~~-----~~L~~gD~ 67 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-I--NN-K---KFQVAVNEEFVQKS-----DFIQPNDT 67 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-G--TT-C---CCEEEETTEEECTT-----SEECTTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-h--hc-c---eEEEEECCEECCCC-----CCcCCCCE
Confidence 45677777889999999999887642 1 11 1 23677788888654 34566774
No 147
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=73.39 E-value=5.3 Score=30.60 Aligned_cols=33 Identities=9% Similarity=0.279 Sum_probs=30.3
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
+.+++.+++|....+.+++++|+++|-+.|.+.
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~ 249 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRG 249 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHH
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHH
Confidence 357888999999999999999999999999996
No 148
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=72.58 E-value=5.3 Score=24.03 Aligned_cols=53 Identities=8% Similarity=-0.068 Sum_probs=35.4
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc-CCCCCcccccCCCCcEEEEEcC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN-WPEDWSDEAVAKADILRLIYQG 55 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~~~~~~~~qrLI~~G 55 (91)
+|+|...+|....+++.++.|+.+.=..---. +|..+.-.|.......++. .|
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~-~g 55 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVA-PA 55 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEEC-GG
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEEC-Cc
Confidence 68999999999999999999998764443223 4444432333445555654 44
No 149
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=72.09 E-value=4 Score=23.03 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=36.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
....++ ....||++|.+.+...+| .|. ..++.....+...|+....+ .-+++|+. |.+
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p-~~~--~~l~~~~~~v~vN~~~v~~~-----~~l~~gD~--V~i 74 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSD-RWA--LALEDGKLLAAVNQTLVSFD-----HPLTDGDE--VAF 74 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCH-HHH--HHHCCTTCEEEETTEECCTT-----CBCCTTCE--EEE
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHCh-hHH--HHhcCCCEEEEECCEECCCC-----CCCCCCCE--EEE
Confidence 355555 567899999999998654 221 00223445677888887543 35677774 544
No 150
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=71.05 E-value=13 Score=21.84 Aligned_cols=58 Identities=10% Similarity=0.208 Sum_probs=38.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHhhcCCCCCccc----ccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 11 KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDE----AVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~----~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
....++++...||++|.+.+...+|+ |... .+.......+.-.|+.... +.-+++|+.
T Consensus 27 ~~~~~e~~~~~Tv~~Ll~~L~~~~p~-l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDe 88 (98)
T 1vjk_A 27 DEEEIELPEGARVRDLIEEIKKRHEK-FKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDV 88 (98)
T ss_dssp SEEEEEECTTCBHHHHHHHHHHHCGG-GGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHhHChh-HHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCE
Confidence 57788888889999999999988752 2110 0011245667778888754 345677775
No 151
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=70.23 E-value=7.1 Score=23.19 Aligned_cols=28 Identities=11% Similarity=0.273 Sum_probs=22.7
Q ss_pred CEEEEEeC--CCCcHHHHHHHHhhcCCCCC
Q psy5872 11 KTKEFLFS--PSDSAGDIAQHVFDNWPEDW 38 (91)
Q Consensus 11 ~~~~~~v~--~~~TV~~lK~~I~~~~p~~~ 38 (91)
+..+++++ +..||++|.+.+.+++|+.|
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~ 49 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNP 49 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSG
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhh
Confidence 56677777 67899999999999887543
No 152
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=70.10 E-value=15 Score=22.00 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=34.7
Q ss_pred EEEEec-CCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCC-CCcEEEEEcCe
Q psy5872 3 LRLILV-SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAK-ADILRLIYQGR 56 (91)
Q Consensus 3 l~~~~~-~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~-~~~qrLI~~Gk 56 (91)
+++|.. .|+.+.+.++++.+..+|.+++.+..+ ++ .+...+-|.--
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~--------~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCS--------FDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTT--------CCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhC--------CCCCCeEEEEEECC
Confidence 556554 679999999999999999999999854 32 34467766643
No 153
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=69.86 E-value=4.4 Score=25.86 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=28.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEc
Q psy5872 12 TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQ 54 (91)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~ 54 (91)
...+.|-.++|+.+||+.|++.. | ++++.|||-.-
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~l-------g-~~~~~~RlW~~ 91 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTM-------G-FPQDQIRLWPM 91 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHH-------C-CCGGGCEEEEC
T ss_pred cceEEEeccCcHHHHHHHHHHHh-------C-CCcccEEEEEe
Confidence 34678888999999999999952 3 88999999654
No 154
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=69.22 E-value=5.1 Score=34.03 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=51.0
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc---CCCCCcccccCCCCcEEEEEcCe-----ec-CCCCcccccCCCC
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN---WPEDWSDEAVAKADILRLIYQGR-----FL-HSNVTLGALGLTC 71 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~---~p~~~~~~~~~~~~~qrLI~~Gk-----~L-~D~~tL~~~~i~~ 71 (91)
|.|.|.+++|-.+.+++..+.|+.++|+.+++. .|--. .- ..++.-.+.|-.+ .+ ++.+-|-++..-
T Consensus 43 i~vd~LLPnGi~i~l~v~~~~tl~~iK~~lw~~a~~~pl~~--~l-~~~~~y~f~~~~~~~~~Ee~~De~~~l~d~~~~- 118 (1091)
T 3hhm_A 43 ILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQ--LL-QDESSYIFVSVTQEAEREEFFDETRRLCDLRLF- 118 (1091)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGG--GC-CCGGGCEEEEEBTTSCEEEECCTTSBTTTSCBS-
T ss_pred eEEEEEcCCCeEEEEEecCCCcHHHHHHHHHHHHHhCcchh--hc-CChhHeEEEEEccCceEeeeecCceeeEEeecc-
Confidence 468899999999999999999999999999984 22110 00 2344445554433 34 345566666643
Q ss_pred CCcEEEEEEecCC
Q psy5872 72 SKTTVMHLVPREN 84 (91)
Q Consensus 72 ~~~~tvhlv~~~~ 84 (91)
.-++.++.++.
T Consensus 119 --~~~l~lve~~~ 129 (1091)
T 3hhm_A 119 --QPFLKVIEPVG 129 (1091)
T ss_dssp --SSEEEEECCCS
T ss_pred --ceeEEEEecCC
Confidence 23677776653
No 155
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=68.07 E-value=7.9 Score=30.78 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=30.5
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
|.+++.+++|....+++++.+|+++|-+.|.+.
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~ 296 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADK 296 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHH
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHH
Confidence 457889999999999999999999999999996
No 156
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=66.16 E-value=8.6 Score=27.60 Aligned_cols=32 Identities=9% Similarity=0.331 Sum_probs=27.9
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
.++|-..+|.+..+.|++++|+++|-+.++..
T Consensus 33 ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k 64 (281)
T 4gmv_A 33 VIRVHMSDDSSKTMMVDERQTVRQVLDNLMDK 64 (281)
T ss_dssp EEEEEETTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHHHHHHh
Confidence 36777789999999999999999999888874
No 157
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=66.03 E-value=14 Score=20.12 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=21.9
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhh
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFD 32 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~ 32 (91)
.+++.+.+|+. .+++.+.|+.++-+.+..
T Consensus 2 ~i~i~~p~g~~--~~~~~g~T~~dla~~i~~ 30 (73)
T 2kmm_A 2 EVMVFTPKGEI--KRLPQGATALDFAYSLHS 30 (73)
T ss_dssp CEEEECTTCCE--EEECTTCBHHHHHHHHCS
T ss_pred eEEEEcCCCCE--EEcCCCCcHHHHHHHHhh
Confidence 35666668876 567789999999888754
No 158
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=64.23 E-value=13 Score=26.30 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=27.6
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
++|-+-+|....+.|++++|+++|-+.+++.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k 41 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYK 41 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCC
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHh
Confidence 5677789999999999999999999988874
No 159
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=63.66 E-value=12 Score=22.24 Aligned_cols=54 Identities=11% Similarity=-0.005 Sum_probs=35.7
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc-CCCCCcccccCCCCcEEEEEcC
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN-WPEDWSDEAVAKADILRLIYQG 55 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~~~~~~~~qrLI~~G 55 (91)
.+|+|...+|...++++.++.|+.+.=..---. +|..+...|....-..+++ .|
T Consensus 1 ~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~-~g 55 (106)
T 1uwm_A 1 AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVD-PA 55 (106)
T ss_dssp CEEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEEC-HH
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEEC-Cc
Confidence 368888889988999999999998754332223 5555533344555666665 44
No 160
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=63.66 E-value=8 Score=23.12 Aligned_cols=51 Identities=14% Similarity=-0.037 Sum_probs=33.3
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCC--CCCcccccCCCCcEEEE
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWP--EDWSDEAVAKADILRLI 52 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p--~~~~~~~~~~~~~qrLI 52 (91)
+|+|...+|+..++++.+++|+.+.=..---.+| ..+...|.......++.
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~ 60 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFE 60 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECC
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEEC
Confidence 5777777899899999999999876443222356 55533343445555554
No 161
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=61.71 E-value=9.1 Score=22.94 Aligned_cols=53 Identities=11% Similarity=-0.016 Sum_probs=35.1
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG 55 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G 55 (91)
+|+|...+|+..++++.++.|+.+.=..---.+|..+...|.......++. .|
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~-~g 59 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVS-ED 59 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEEC-HH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEEC-Cc
Confidence 577777899999999999999987644322235655543344455666665 44
No 162
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=61.67 E-value=7.7 Score=31.00 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=40.0
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeec-CCCCcccccC
Q psy5872 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFL-HSNVTLGALG 68 (91)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L-~D~~tL~~~~ 68 (91)
.++...+.+.++.|+.++++.|++. .+ ++++.|.|++.+..- +.....+.|-
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~-------T~-i~~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQD-------TG-IPEEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTT-------SC-CCSTTCEEESSSSCCCCTTSCGGGSC
T ss_pred ccccceeecCCCccHHHHHHHHHHH-------hC-CCHHHHHHHhccCCCCCCCcchhhhe
Confidence 4466678899999999999999995 34 999999999876544 4455666653
No 163
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=61.54 E-value=12 Score=21.99 Aligned_cols=53 Identities=9% Similarity=-0.028 Sum_probs=33.5
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQG 55 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~G 55 (91)
+|+|...+|....++++++.|+.+.=..---.+|..+.-.|.......++. .|
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~-~g 57 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVD-PE 57 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEEC-HH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEEC-CC
Confidence 577776889889999999999987654432234544431233445555554 44
No 164
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=59.73 E-value=14 Score=21.87 Aligned_cols=53 Identities=11% Similarity=-0.044 Sum_probs=35.0
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc-CCCCCcccccCCCCcEEEEEcC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN-WPEDWSDEAVAKADILRLIYQG 55 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~~~~~~~~qrLI~~G 55 (91)
+|+|...+|...++++.++.|+.+.=..---. +|..+...|.......++. .|
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~-~g 55 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVN-EA 55 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEEC-TT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEEC-Cc
Confidence 57887889988999999999998764433323 5555532343455556654 55
No 165
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=57.20 E-value=11 Score=23.61 Aligned_cols=53 Identities=6% Similarity=0.013 Sum_probs=33.6
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc-CCCCCcccccCCCCcEEEEEcC
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN-WPEDWSDEAVAKADILRLIYQG 55 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~~~~~~~~qrLI~~G 55 (91)
+|+|...+|....+++.++.|+.+.=..---. +|..+.-.|.......++. .|
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~-~G 76 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVD-EA 76 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEEC-GG
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEEC-CC
Confidence 67888889999999999999998753332222 4444432333444555554 44
No 166
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=56.78 E-value=8.5 Score=27.39 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=25.3
Q ss_pred CEEEEEecCCCEEEEEeCC--CCcHHHHHHH
Q psy5872 1 INLRLILVSGKTKEFLFSP--SDSAGDIAQH 29 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~--~~TV~~lK~~ 29 (91)
+.++|-+++|....++++. ++|+++|-+.
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~e~ 36 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIMEG 36 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHHTT
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHHHH
Confidence 4678889999999999999 9999999554
No 167
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=56.31 E-value=22 Score=26.35 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=40.4
Q ss_pred EEEEe------cCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCccccc--CCCCcEEE--EE----cCeecCCCCccccc
Q psy5872 3 LRLIL------VSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAV--AKADILRL--IY----QGRFLHSNVTLGAL 67 (91)
Q Consensus 3 l~~~~------~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~--~~~~~qrL--I~----~Gk~L~D~~tL~~~ 67 (91)
|+++. ++|....+.++.++||+++-..|.+.- +.|. ...+..=| .+ ..+.|+.+++|.+.
T Consensus 24 ~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~-----kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 24 LKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSG-----RIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp EEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTT-----TTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred EEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHh-----hcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 56677 788999999999999999999998410 0120 12334433 33 22677888888763
No 168
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=55.05 E-value=17 Score=24.80 Aligned_cols=31 Identities=16% Similarity=0.397 Sum_probs=27.0
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
+++-..+|.+..+.|++++|+.+|-+.+.+.
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k 67 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEK 67 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHH
Confidence 5566678899999999999999999998885
No 169
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=54.98 E-value=13 Score=24.34 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=41.2
Q ss_pred eCCCCcHHHHHHHHhhcCCCCC------------cc-c-ccCCCCcEEEEEcCeec-CCCCcccccCCCCCCcEEEEEEe
Q psy5872 17 FSPSDSAGDIAQHVFDNWPEDW------------SD-E-AVAKADILRLIYQGRFL-HSNVTLGALGLTCSKTTVMHLVP 81 (91)
Q Consensus 17 v~~~~TV~~lK~~I~~~~p~~~------------~~-~-~~~~~~~qrLI~~Gk~L-~D~~tL~~~~i~~~~~~tvhlv~ 81 (91)
.=.+.|..+|-..|.+..|+-- .. . +..-..++=-++.|+-- +|++||.+++...|+. |-+.+
T Consensus 60 TW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDy--idvaI 137 (143)
T 4a6q_A 60 TWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDY--LDIAI 137 (143)
T ss_dssp ECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCE--EEEEE
T ss_pred eCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCE--EEEEE
Confidence 3368999999999999877530 00 0 00111223335666655 5789999999999996 44444
Q ss_pred cC
Q psy5872 82 RE 83 (91)
Q Consensus 82 ~~ 83 (91)
-+
T Consensus 138 ~p 139 (143)
T 4a6q_A 138 TP 139 (143)
T ss_dssp EC
T ss_pred eC
Confidence 33
No 170
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=54.87 E-value=12 Score=24.43 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=21.5
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHH
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHV 30 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I 30 (91)
++| +++|+.+++++++++|+.++=...
T Consensus 5 i~~-~vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 5 LRL-TLNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEE-EETTEEEEEEEETTCBHHHHHHHT
T ss_pred EEE-EECCEEEEEecCCcCcHHHHHHHc
Confidence 444 679999999999999998765543
No 171
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=53.84 E-value=12 Score=23.25 Aligned_cols=26 Identities=4% Similarity=0.035 Sum_probs=21.4
Q ss_pred EEEEEeCC---CCcHHHHHHHHhhcCCCC
Q psy5872 12 TKEFLFSP---SDSAGDIAQHVFDNWPED 37 (91)
Q Consensus 12 ~~~~~v~~---~~TV~~lK~~I~~~~p~~ 37 (91)
..+++++. ..||++|-+.+.+++|..
T Consensus 31 ~~~vel~~~~~~~TV~~Ll~~L~~~~~~~ 59 (114)
T 1wgk_A 31 KHQVALPGQEEPWDIRNLLVWIKKNLLKE 59 (114)
T ss_dssp EEEEEECCCSSCCBHHHHHHHHTTTTCCS
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHccch
Confidence 66788883 369999999999998765
No 172
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=52.76 E-value=18 Score=23.86 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=20.5
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHH
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQH 29 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~ 29 (91)
++| +++|+.+++++++++|+.++=..
T Consensus 6 i~~-~vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 6 ITV-NVNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEE-EETTEEEEEEECTTCBHHHHHHH
T ss_pred EEE-EECCEEEEEecCCCCcHHHHHHh
Confidence 344 57999999999999999975443
No 173
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=52.05 E-value=18 Score=23.85 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=20.6
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHH
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQH 29 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~ 29 (91)
++| +++|+.+++++++++|+.++=..
T Consensus 6 i~~-~vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 6 IEL-TINGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEE-EETTEEEEEEECTTCBHHHHHHH
T ss_pred EEE-EECCEEEEEecCCCCcHHHHHHH
Confidence 444 57999999999999999975443
No 174
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=51.27 E-value=35 Score=20.05 Aligned_cols=53 Identities=9% Similarity=0.103 Sum_probs=34.1
Q ss_pred ecCCCEEEEEeCCC-CcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 7 LVSGKTKEFLFSPS-DSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 7 ~~~g~~~~~~v~~~-~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
+++|+. ++++.. .||.+|.+.+.- ++..+.+...|+++..+ ...+.-+++|+.
T Consensus 24 ~vNGe~--~el~~~~~Tv~dLL~~L~~------------~~~~vaVavNg~iV~~~-~~~~~~L~dGD~ 77 (87)
T 1tyg_B 24 QLNGKD--VKWKKDTGTIQDLLASYQL------------ENKIVIVERNKEIIGKE-RYHEVELCDRDV 77 (87)
T ss_dssp EETTEE--ECCSSSCCBHHHHHHHTTC------------TTSCCEEEETTEEECGG-GTTTSBCCSSSE
T ss_pred EECCEE--EECCCCCCcHHHHHHHhCC------------CCCCEEEEECCEECChh-hcCCcCCCCCCE
Confidence 456664 455776 899999887632 34566788899888432 222345677774
No 175
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.16 E-value=40 Score=20.37 Aligned_cols=54 Identities=19% Similarity=0.146 Sum_probs=42.9
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEE---cCeecCCCCcccccCCC
Q psy5872 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIY---QGRFLHSNVTLGALGLT 70 (91)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~---~Gk~L~D~~tL~~~~i~ 70 (91)
.-+...+.|.|..+..+|--.|.+. ..++++..-|.. .+..|+=+++|.+|||+
T Consensus 19 ~tQKtVvRVSP~vpL~ellp~IC~K--------cefdp~~~~Ll~d~~~~e~LdLskSLndlgir 75 (91)
T 2daj_A 19 KTQKTIVRVSPHASLQELAPIICSK--------CEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLR 75 (91)
T ss_dssp TTEEEEEEECSSSCTTTHHHHHHHH--------TTCCTTSEEEESCSSCCCBCCTTSCHHHHTCS
T ss_pred CcceeEEEeCCCCcHHHHHHHHhhc--------ccCChhhEEEecCCCCCcccchhcchhhhhhh
Confidence 4466778999999999999999995 346777777754 45566779999999998
No 176
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=49.53 E-value=9.4 Score=22.62 Aligned_cols=54 Identities=7% Similarity=-0.073 Sum_probs=35.2
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc-CCCCCcccccCCCCcEEEEEcC
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN-WPEDWSDEAVAKADILRLIYQG 55 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~~~~~~~~qrLI~~G 55 (91)
++|+|...+|...+++++++.|+.+.=..---. +|..+.-.|....-..++. .|
T Consensus 1 ~~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~-~G 55 (105)
T 1b9r_A 1 PRVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIE-DA 55 (105)
T ss_dssp CEEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEEC-TT
T ss_pred CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEEC-Cc
Confidence 367887788988899999999998764443333 5555532343455666665 45
No 177
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=49.09 E-value=4.8 Score=23.46 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=36.5
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHhhcCCCCCccc------ccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDE------AVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~------~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
.|...+++. +..||++|.+.+.+.+|+- ... .+--.....+.-.|+...+..-+ +.-+++|+.
T Consensus 15 ~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l-~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDe 83 (93)
T 3dwg_C 15 TGGQKSVSA-SGDTLGAVISDLEANYSGI-SERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDS 83 (93)
T ss_dssp TTTCSEEEE-CCSBHHHHHHHHHHHSTTH-HHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCE
T ss_pred hCCCeEEec-CCCCHHHHHHHHHHHChhH-HHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCE
Confidence 453335665 4679999999999987632 100 00111246777788877542222 234677774
No 178
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=49.08 E-value=21 Score=19.28 Aligned_cols=52 Identities=4% Similarity=0.058 Sum_probs=34.0
Q ss_pred ecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 7 LVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 7 ~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
+++|+.+++ +..||.+|.+.+.. +.....+...|+++..+ .-.+.-+++|+.
T Consensus 3 ~vNg~~~~~---~~~tv~~ll~~l~~------------~~~~v~vavN~~~v~~~-~~~~~~L~dgD~ 54 (64)
T 2cu3_A 3 WLNGEPRPL---EGKTLKEVLEEMGV------------ELKGVAVLLNEEAFLGL-EVPDRPLRDGDV 54 (64)
T ss_dssp EETTEEECC---TTCCHHHHHHHHTB------------CGGGEEEEETTEEEEGG-GCCCCCCCTTCE
T ss_pred EECCEEEEc---CCCcHHHHHHHcCC------------CCCcEEEEECCEECCcc-ccCCcCCCCCCE
Confidence 567776654 57899999888743 34566778888888422 122235677774
No 179
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=46.62 E-value=16 Score=28.18 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=28.0
Q ss_pred EEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEc
Q psy5872 13 KEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQ 54 (91)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~ 54 (91)
..+.+..++|+.+||+.|++.. | ++++.|||-..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~l-------g-~~~~~~RlW~~ 71 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTM-------G-FPQDQIRLWPM 71 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHH-------T-SCGGGEEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHh-------C-cCcccEEEEEE
Confidence 4678889999999999999952 3 88999999433
No 180
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=46.53 E-value=24 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=19.9
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHH
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIA 27 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK 27 (91)
++| +++|+.++++++|++|+.++=
T Consensus 6 i~~-~vNG~~~~v~v~p~~tLLd~L 29 (160)
T 3hrd_D 6 INL-NLNGEARSIVTEPNKRLLDLL 29 (160)
T ss_dssp EEE-EETTEEEEEEECSSSBHHHHH
T ss_pred EEE-EECCEEEEEecCCCCCHHHHH
Confidence 444 689999999999999998763
No 181
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=46.53 E-value=34 Score=18.49 Aligned_cols=53 Identities=4% Similarity=0.043 Sum_probs=33.9
Q ss_pred ecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 7 LVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 7 ~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
+++|+.+ +++...||.+|.+.+.- +.....+...|+++..+ ...+.-+++|+.
T Consensus 4 ~vNg~~~--~~~~~~tv~~ll~~l~~------------~~~~v~vavN~~~v~~~-~~~~~~L~~gD~ 56 (66)
T 1f0z_A 4 LFNDQAM--QCAAGQTVHELLEQLDQ------------RQAGAALAINQQIVPRE-QWAQHIVQDGDQ 56 (66)
T ss_dssp EESSCEE--CCCTTCCHHHHHHHHTC------------CCSSEEEEETTEEECHH-HHTTCCCCTTEE
T ss_pred EECCEEE--EcCCCCcHHHHHHHcCC------------CCCCEEEEECCEECCch-hcCCcCCCCCCE
Confidence 5677754 55778899999988743 34566788888887431 111234566653
No 182
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=46.37 E-value=16 Score=26.62 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=38.3
Q ss_pred EEEEecCCC----EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEE--c--C--eecCCCCcccc
Q psy5872 3 LRLILVSGK----TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIY--Q--G--RFLHSNVTLGA 66 (91)
Q Consensus 3 l~~~~~~g~----~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~--~--G--k~L~D~~tL~~ 66 (91)
++|.+.+|. ...+.+++++|+++|-..|.+.. +-...+..=|.+ . | ..|+.+++|.+
T Consensus 10 l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~l-------gL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 10 FHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCH-------KVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp ECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHT-------TCSCGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHc-------CCCeEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 345566777 99999999999999999999963 212233444433 2 2 24677777754
No 183
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=44.84 E-value=11 Score=21.39 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=29.7
Q ss_pred EEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 13 KEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
.++++++..||.+|.+.+.- +.....+...|+....+. -+++|+.
T Consensus 23 ~~~~~~~~~Tv~dLl~~L~~------------~~~~v~VavNg~~v~~~~-----~L~dGD~ 67 (77)
T 1rws_A 23 KEIEWREGMKVRDILRAVGF------------NTESAIAKVNGKVVLEDD-----EVKDGDF 67 (77)
T ss_dssp CCCCCCSSCCHHHHHHTTTC------------SSCSSCEEETTEEECSSS-----CCCSSCC
T ss_pred EEEECCCCCcHHHHHHHhCC------------CCcCEEEEECCEECCCCC-----CcCCCCE
Confidence 34567778999999877642 234456777888886543 4555553
No 184
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=42.69 E-value=26 Score=20.27 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=35.5
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCee
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRF 57 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~ 57 (91)
+|+|...+|....++++++.|+.+.=..---.+|..+ ..|....-..+++ .|..
T Consensus 6 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C-~~G~Cg~C~v~v~-~G~~ 59 (98)
T 1jq4_A 6 TITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSC-REGGCATCKALCS-EGDY 59 (98)
T ss_dssp EEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSC-CSSCCCCCCBCEE-ECCC
T ss_pred EEEEEecCCCcEEEEeCCCChHHHHHHHcCCCCcCCC-CCCCCCCCEEEEE-cCcc
Confidence 5666666688889999999999876555333455555 3454556666664 5653
No 185
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=42.63 E-value=83 Score=24.17 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=34.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEE--EEcCeec---CCCCccccc
Q psy5872 12 TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRL--IYQGRFL---HSNVTLGAL 67 (91)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrL--I~~Gk~L---~D~~tL~~~ 67 (91)
.+.+-++.+.||++|-+.++....-. + -+...+|| ||.||+. .++.+|++.
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~---~--~~~~~lRl~ev~~~ki~ki~~~~~~i~~i 408 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELG---E--KASGKLRLLEIVSYKIIGVHQEDELLECL 408 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCC---T--TCCCCEEEEEEETTEEEEEECTTSBGGGS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCC---c--CCcccEEEEEEECCEEEEecCCCcccccc
Confidence 55666777999999999998852100 0 12577887 6888854 567777654
No 186
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=41.24 E-value=5.6 Score=24.92 Aligned_cols=53 Identities=15% Similarity=-0.028 Sum_probs=6.3
Q ss_pred CEEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCC--CCCcccccCCCCcEEEEE
Q psy5872 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWP--EDWSDEAVAKADILRLIY 53 (91)
Q Consensus 1 i~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p--~~~~~~~~~~~~~qrLI~ 53 (91)
++|+|...+|....+++.++.|+.+.=..---.+| ..++-.+.......++.-
T Consensus 6 v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~ 60 (123)
T 3n9z_C 6 ITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFED 60 (123)
T ss_dssp -------------------------------------CTTCSSSSCSTTBC----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEec
Confidence 46788888999899999999998865332221244 344323334555666653
No 187
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=41.13 E-value=33 Score=22.31 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=19.4
Q ss_pred ecCCCEEEEEeCCCCcHHHHHHH
Q psy5872 7 LVSGKTKEFLFSPSDSAGDIAQH 29 (91)
Q Consensus 7 ~~~g~~~~~~v~~~~TV~~lK~~ 29 (91)
+++|+.+++++++++|+.++=..
T Consensus 15 ~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 15 TINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EETTEEEEEEECTTSBHHHHHHH
T ss_pred EECCEEEEEecCCCCcHHHHHHh
Confidence 57999999999999999876544
No 188
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=37.91 E-value=63 Score=19.65 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=22.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 10 GKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
+..+.+-|+++.+..+|..+|.++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~K 45 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSK 45 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHH
Confidence 568999999999999999999986
No 189
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=36.24 E-value=37 Score=19.08 Aligned_cols=61 Identities=8% Similarity=0.007 Sum_probs=35.6
Q ss_pred EEEeCCCCcHHHHHHHHhhcCCCCCcc-----cccCCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 14 EFLFSPSDSAGDIAQHVFDNWPEDWSD-----EAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~p~~~~~-----~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
+++++...||++|.+.+...+|+ +.. +.+ ......+...|+......- .+.-+++|+. |.+
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~-~~~~~l~~~~g-~~~~v~v~vN~~~v~~~~~-~~~~l~~gD~--V~i 83 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGS-EFTKQMYDGNN-LFKNVIILVNGNNITSMKG-LDTEIKDDDK--IDL 83 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCH-HHHHHHCCSSC-STTTCEEEESSSBGGGTCS-SSCBCCTTCE--EEE
T ss_pred EEEcCCCCcHHHHHHHHHHHCcc-hhhhccccccC-cCcceEEEECCEEccccCC-CCcCCCCCCE--EEE
Confidence 45677778999999999987641 110 000 1145667788887752111 1234677774 444
No 190
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=35.95 E-value=21 Score=18.43 Aligned_cols=14 Identities=7% Similarity=0.209 Sum_probs=11.2
Q ss_pred CCcHHHHHHHHhhc
Q psy5872 20 SDSAGDIAQHVFDN 33 (91)
Q Consensus 20 ~~TV~~lK~~I~~~ 33 (91)
+.||.+||..|++.
T Consensus 2 sntvkelknyiqel 15 (46)
T 3he4_B 2 SNTVKELKNYIQEL 15 (46)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 56999999999874
No 191
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=34.32 E-value=73 Score=18.82 Aligned_cols=68 Identities=21% Similarity=0.316 Sum_probs=41.2
Q ss_pred EEEEEecCC----CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEE-cCeec-CCCCccccc----CCCC
Q psy5872 2 NLRLILVSG----KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIY-QGRFL-HSNVTLGAL----GLTC 71 (91)
Q Consensus 2 ~l~~~~~~g----~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~-~Gk~L-~D~~tL~~~----~i~~ 71 (91)
.|+|+-... +...+.|+.+.||+++...|..+. . .++++-=++| ...++ ..+.+++++ + .
T Consensus 7 ~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL-------~-l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~- 76 (91)
T 4gdk_A 7 DILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFL-------K-LVASEQLFIYVNQSFAPSPDQEVGTLYECFG-S- 76 (91)
T ss_dssp EEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHT-------T-CCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-B-
T ss_pred EEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHh-------C-CCCCCeEEEEECCccCCChhhHHHHHHHHhC-C-
Confidence 455555433 455688999999999999999963 1 3444434445 44455 346776643 5 3
Q ss_pred CCcEEEEE
Q psy5872 72 SKTTVMHL 79 (91)
Q Consensus 72 ~~~~tvhl 79 (91)
+....|+-
T Consensus 77 DGfLyv~Y 84 (91)
T 4gdk_A 77 DGKLVLHY 84 (91)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 44444543
No 192
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=33.91 E-value=66 Score=19.12 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=22.5
Q ss_pred EEEEecCC-CEEEEEeCC-CCcHHHHHHHHhhc
Q psy5872 3 LRLILVSG-KTKEFLFSP-SDSAGDIAQHVFDN 33 (91)
Q Consensus 3 l~~~~~~g-~~~~~~v~~-~~TV~~lK~~I~~~ 33 (91)
|.+|.-+. +.-.+.++- ..+|.+||+.|.++
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~ 41 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGR 41 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHH
Confidence 34444555 456678885 67999999999995
No 193
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803}
Probab=33.12 E-value=66 Score=17.92 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=38.5
Q ss_pred EEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcc
Q psy5872 3 LRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTL 64 (91)
Q Consensus 3 l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL 64 (91)
|-|..+..++.+++++.+.-..+|-..+... --...|--+||+|....-|
T Consensus 2 lvivrlqdq~lpfelpaga~asqls~lls~~------------gm~fslhtqgrvlseaael 51 (69)
T 2jx5_A 2 LVIVRLQDQTLPFELPAGARASQLSNLLSSS------------GMAFSLHTQGRVLSEAAEL 51 (69)
T ss_dssp EEEEEETTEEEEEECCTTCCHHHHHHHHHHS------------SCCCEEEETTEECCTTCCC
T ss_pred eEEEEeccccccccccccccHHHHHHHHhhc------------CceEEEeecchhhhhHHhh
Confidence 3455667799999999999999999998883 2445677799999665433
No 194
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=32.44 E-value=60 Score=18.15 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=32.3
Q ss_pred ecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 7 LVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 7 ~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
+++|+.+++ +..||.+|-+.+. +++...-+-..|.++.-+ ...+.-+++|+.
T Consensus 4 ~vNG~~~e~---~~~Tl~~LL~~l~------------~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~ 55 (73)
T 2kl0_A 4 TINGEQREV---QSASVAALMTELD------------CTGGHFAVALNYDVVPRG-KWDETPVTAGDE 55 (73)
T ss_dssp EETTEEECC---CCSBHHHHHHHTT------------CCSSSCEEEESSSEECHH-HHTTCBCCTTCE
T ss_pred EECCEEEEc---CCCcHHHHHHHcC------------CCCCcEEEEECCEECChH-HcCcccCCCCCE
Confidence 567876554 5689999876543 345666788899887321 122334566664
No 195
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=32.08 E-value=82 Score=18.69 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=34.1
Q ss_pred EEEEEecCC----CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeec-CCCCccccc
Q psy5872 2 NLRLILVSG----KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFL-HSNVTLGAL 67 (91)
Q Consensus 2 ~l~~~~~~g----~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L-~D~~tL~~~ 67 (91)
.|+|+-... +...+.++.+.|++++-..|..+ ..-+.+=|.-...++ .-+.+++++
T Consensus 10 ~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkr----------L~l~alFlyVNn~f~Ps~d~~~~~L 70 (91)
T 3w1s_C 10 QIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRR----------LKMDHVYCYINNSFAPSPQQNIGEL 70 (91)
T ss_dssp EEEEEECCC-------EEEEETTSBHHHHHHHHHHH----------HTCSCCEEEETTTBCCCTTSBHHHH
T ss_pred EEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHh----------hCCceEEEEECCccCCCcccHHHHH
Confidence 455554433 34557899999999999999996 222455443355555 346676643
No 196
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=31.60 E-value=77 Score=19.97 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=42.5
Q ss_pred EEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEE---EcCeec--C--CCCcccccCCCCCCcEE
Q psy5872 4 RLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLI---YQGRFL--H--SNVTLGALGLTCSKTTV 76 (91)
Q Consensus 4 ~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI---~~Gk~L--~--D~~tL~~~~i~~~~~~t 76 (91)
++-..+..-+++.+..+.|+.+++..++++. .+.++.+-+.+.+.|+ ++|-.+ + |..-..++++. | -
T Consensus 13 ~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl--~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~N-g---R 86 (120)
T 2dhz_A 13 RVYMPDHSYVTIRSRLSASVQDILGSVTEKL--QYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGIN-S---H 86 (120)
T ss_dssp CEECTTSCCCCEEECTTCCHHHHHHHHHHHS--TTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSS-E---E
T ss_pred EEEeccCceEEEEEeccccHHHHHHHHHHHh--ccccccccccCceEEEEEccCCcEeecCCcceEEEeecccc-c---e
Confidence 4444566677788999999999999999963 1222211234456554 455433 3 33344566774 2 3
Q ss_pred EEEEec
Q psy5872 77 MHLVPR 82 (91)
Q Consensus 77 vhlv~~ 82 (91)
+++..+
T Consensus 87 Lfvc~k 92 (120)
T 2dhz_A 87 LFACTR 92 (120)
T ss_dssp EEEECT
T ss_pred EEEeeh
Confidence 665433
No 197
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=31.24 E-value=68 Score=17.55 Aligned_cols=61 Identities=5% Similarity=0.150 Sum_probs=36.3
Q ss_pred EEEEecCC-CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 3 LRLILVSG-KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 3 l~~~~~~g-~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
++++.... +.-++++ ...||++|.+.+... | .+.+ ......+.-.|+...+. +.-+++|+.
T Consensus 3 v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~-~-~l~~----~l~~~~vavN~~~v~~~----~~~l~~gDe 64 (74)
T 3rpf_C 3 VEVRFFGPIKEENFFI-KANDLKELRAILQEK-E-GLKE----WLGVCAIALNDHLIDNL----NTPLKDGDV 64 (74)
T ss_dssp EEEEECTTCCCCCEEE-ECSSHHHHHHHHHTC-T-TTTT----TTTTCEEEESSSEECCT----TCCCCTTCE
T ss_pred EEEEEEeecceeEEee-CCCcHHHHHHHHHHC-c-CHHH----HhhccEEEECCEEcCCC----CcCCCCCCE
Confidence 45555544 1134666 678999999999875 3 2210 11456666677775432 335677774
No 198
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=31.09 E-value=43 Score=21.09 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=27.9
Q ss_pred CCCCcEEEEEcCeecCCCCcccccCCCCCCcEEEEE
Q psy5872 44 AKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHL 79 (91)
Q Consensus 44 ~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~~tvhl 79 (91)
.+|--+||-|.|++.+|+..=++|.+..|. .+|++
T Consensus 58 ~~PYyLRL~lP~~vved~~~~A~YD~d~g~-~~v~l 92 (115)
T 3eud_A 58 LSPYYLRLRFPHELIDDERSTAQYDSKDEC-INVKV 92 (115)
T ss_dssp ETTEEEEEECSSCEECSTTCEEEEETTTTE-EEEEE
T ss_pred cCCeEEEEecCcceecCCCcceEEeCCCcE-EEEEE
Confidence 467789999999999998887899998663 45555
No 199
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=30.42 E-value=49 Score=19.61 Aligned_cols=54 Identities=6% Similarity=-0.036 Sum_probs=35.0
Q ss_pred EEEEEecCC---CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCe
Q psy5872 2 NLRLILVSG---KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGR 56 (91)
Q Consensus 2 ~l~~~~~~g---~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk 56 (91)
+|+|...+| ...+++++++.|+.+.=..---.+|..+...|.......+++ .|.
T Consensus 3 ~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~-~G~ 59 (113)
T 3ah7_A 3 LVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVR-KGF 59 (113)
T ss_dssp EEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEE-ESG
T ss_pred EEEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEc-CCc
Confidence 577877776 677899999999987644433345655532344556667776 453
No 200
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=29.34 E-value=79 Score=17.89 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=31.6
Q ss_pred ecCCCEEEEEeC--CCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecCCCCcccccCCCCCCc
Q psy5872 7 LVSGKTKEFLFS--PSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKT 74 (91)
Q Consensus 7 ~~~g~~~~~~v~--~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~D~~tL~~~~i~~~~~ 74 (91)
+++|+.+ +++ ...||.+|-+.+.-.| +...-+-..|.++.-+ ...+.-+++|+.
T Consensus 4 ~vNGe~~--e~~~~~~~Tl~~LL~~l~~~~-----------~~~vAVavNg~iVpr~-~~~~~~L~dGD~ 59 (78)
T 2k5p_A 4 TVNGKPS--TVDGAESLNVTELLSALKVAQ-----------AEYVTVELNGEVLERE-AFDATTVKDGDA 59 (78)
T ss_dssp EETTEEE--ECSSCSCEEHHHHHHHHTCSC-----------TTTCCEEETTEECCTT-HHHHCEECSSBC
T ss_pred EECCEEE--EcCCCCCCcHHHHHHHcCCCC-----------CCcEEEEECCEECChH-HcCcccCCCCCE
Confidence 5677754 455 6789999987765433 3344466788887432 122233455553
No 201
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=26.06 E-value=18 Score=22.30 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=21.8
Q ss_pred CCCEEEEEeCC----CCcHHHHHHHHhhcCCCC
Q psy5872 9 SGKTKEFLFSP----SDSAGDIAQHVFDNWPED 37 (91)
Q Consensus 9 ~g~~~~~~v~~----~~TV~~lK~~I~~~~p~~ 37 (91)
.|+...++++. ..||++|=..+.+.+|..
T Consensus 19 ~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~~~ 51 (110)
T 2k9x_A 19 FAKQTSLQLDGVVPTGTNLNGLVQLLKTNYVKE 51 (110)
T ss_dssp TTSCSEECCCCSCGGGCCHHHHHHHHTTTTCCS
T ss_pred hCCeEEEEeCCcCCCCccHHHHHHHHHHHcccc
Confidence 45555677773 359999999999988755
No 202
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=25.89 E-value=64 Score=18.45 Aligned_cols=54 Identities=9% Similarity=0.090 Sum_probs=31.9
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc-CCCCCcccccCCCCcEEEEEcCee
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN-WPEDWSDEAVAKADILRLIYQGRF 57 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~~~~~~~~qrLI~~Gk~ 57 (91)
+++| ..+|+...+++++.+|+.+.=..---. +|..+.-.|....-..++.- |++
T Consensus 2 ~v~i-~~~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~-g~~ 56 (93)
T 1l5p_A 2 TITA-VKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVS-GKV 56 (93)
T ss_dssp EEEE-EETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEE-SCC
T ss_pred eEEE-EeCCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECC-CcC
Confidence 3564 678998999999999998764332222 44443213334455556553 543
No 203
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=25.77 E-value=25 Score=16.10 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=8.6
Q ss_pred EEEecCCCCCCC
Q psy5872 78 HLVPRENLPEPN 89 (91)
Q Consensus 78 hlv~~~~~p~~~ 89 (91)
|-.+.+++|+|+
T Consensus 5 hsivqppapppn 16 (26)
T 2lkw_A 5 HSIVQPPAPPPN 16 (26)
T ss_pred cccccCCCcCCC
Confidence 445678888886
No 204
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=25.46 E-value=23 Score=25.22 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=13.7
Q ss_pred cccccCCCCCCcEEEEEEecC
Q psy5872 63 TLGALGLTCSKTTVMHLVPRE 83 (91)
Q Consensus 63 tL~~~~i~~~~~~tvhlv~~~ 83 (91)
-|+++||++|+...||-.+++
T Consensus 21 ~L~~LGI~~Gd~llVHsSl~~ 41 (273)
T 2nyg_A 21 DLKALGLKKGMTVLVHSSLSS 41 (273)
T ss_dssp HHHHHTCCTTCEEEEEECSGG
T ss_pred HHHHcCCCCCCEEEEEechHH
Confidence 356667777777777765543
No 205
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=24.99 E-value=1.2e+02 Score=18.62 Aligned_cols=32 Identities=13% Similarity=0.016 Sum_probs=26.3
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhc
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDN 33 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~ 33 (91)
..++-..+..-+++.+..+.|+.+++..+++.
T Consensus 11 ~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~k 42 (104)
T 1wgy_A 11 FCHVYITEHSYVSVKAKVSSIAQEILKVVAEK 42 (104)
T ss_dssp CEEEECSSSCEEEECCCTTCBSHHHHHHHHHH
T ss_pred EEEEEeccCceEEEEEeccchHHHHHHHHHHH
Confidence 34555567778889999999999999999995
No 206
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=24.78 E-value=72 Score=18.82 Aligned_cols=54 Identities=6% Similarity=-0.074 Sum_probs=33.9
Q ss_pred EEEEEecCC---CEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCe
Q psy5872 2 NLRLILVSG---KTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGR 56 (91)
Q Consensus 2 ~l~~~~~~g---~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk 56 (91)
+|+|...+| ...+++++++.|+.+.=..---.+|..+...|.......++. .|.
T Consensus 3 ~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~-~G~ 59 (111)
T 1i7h_A 3 KIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVR-EGF 59 (111)
T ss_dssp EEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEE-ECG
T ss_pred EEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEc-cCc
Confidence 567766555 667889999999987644433235555533444556666765 554
No 207
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=24.33 E-value=28 Score=25.09 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=15.5
Q ss_pred CcccccCCCCCCcEEEEEEecC
Q psy5872 62 VTLGALGLTCSKTTVMHLVPRE 83 (91)
Q Consensus 62 ~tL~~~~i~~~~~~tvhlv~~~ 83 (91)
..|.++||++|+...||-.+++
T Consensus 29 ~~L~~LGI~~Gd~llVHsSL~~ 50 (286)
T 3sma_A 29 SDLAALGVRPGGVLLVHASLSA 50 (286)
T ss_dssp HHHHHHTCCTTCEEEEEECSTT
T ss_pred HHHHHcCCCCCCEEEEEechHH
Confidence 4466778888887777776654
No 208
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=24.21 E-value=1.1e+02 Score=17.41 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=39.6
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCCCcEEEEEcCeecC-CCCccc
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLH-SNVTLG 65 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~~~qrLI~~Gk~L~-D~~tL~ 65 (91)
+|+|...+| ...++++++.|+.+.=..-- .+|..+. .|....-..+++ .|+.-. +...|.
T Consensus 3 ~V~~~~~~~-~~~~~~~~g~tlL~a~~~~g-~i~~~C~-~G~Cg~C~v~v~-~G~~~~~e~~~L~ 63 (93)
T 1wri_A 3 KVTLKTPDG-DITFDVEPGERLIDIGSEKA-DLPLSCQ-AGACSTCLGKIV-SGTVDQSEGSFLD 63 (93)
T ss_dssp EEEEEETTE-EEEEEECTTSCHHHHHHHHS-CCCCSSS-SSSSSTTEEEEE-ESCEECTTCCSCC
T ss_pred EEEEEECCC-eEEEEECCCCcHHHHHHHCc-CCCCCCC-CCCCCCCEEEEe-cCccCccccccCC
Confidence 456655555 68899999999998766666 6776664 554566677765 565543 334443
No 209
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=23.71 E-value=24 Score=25.10 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=13.3
Q ss_pred cccccCCCCCCcEEEEEEecC
Q psy5872 63 TLGALGLTCSKTTVMHLVPRE 83 (91)
Q Consensus 63 tL~~~~i~~~~~~tvhlv~~~ 83 (91)
.|+++||++|+...||-.+++
T Consensus 23 ~L~~LGi~~Gd~llVHsSl~~ 43 (268)
T 3ijw_A 23 DLRKLGLKKGMTVIVHSSLSS 43 (268)
T ss_dssp HHHHHTCCTTCEEEEEECTGG
T ss_pred HHHHcCCCCCCEEEEEechHH
Confidence 355667777776666665543
No 210
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=21.93 E-value=1.8e+02 Score=23.06 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=37.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcCCCCCcccccCCC---CcEEEEEcCe--e----cCC--CCcccccCCCCCCc
Q psy5872 12 TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKA---DILRLIYQGR--F----LHS--NVTLGALGLTCSKT 74 (91)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~~---~~qrLI~~Gk--~----L~D--~~tL~~~~i~~~~~ 74 (91)
...++++++.|+.++-+.+..+..-.+.... ++. ...+++|... . .++ +++|+++|+..|+.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 785 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPA-ITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQE 785 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCE-EEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccce-EEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCE
Confidence 4567888889999998888885110010000 111 1357888642 1 222 68899999998874
No 211
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=21.29 E-value=1.2e+02 Score=17.15 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=22.4
Q ss_pred EEEEEecCCCEEEEEeCCCCcHHHHHHHHhh
Q psy5872 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFD 32 (91)
Q Consensus 2 ~l~~~~~~g~~~~~~v~~~~TV~~lK~~I~~ 32 (91)
++.+.+.+|+.+ +++.+.|+.++-..|..
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~ 35 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHS 35 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCH
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhh
Confidence 356777888764 67888999999888765
No 212
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=20.64 E-value=1.3e+02 Score=18.09 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=29.8
Q ss_pred EEEeCCCCcHHHHHHHHhhcCCCCCcccccCC-CCcEEEEEcCeec-CCCCccccc
Q psy5872 14 EFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAK-ADILRLIYQGRFL-HSNVTLGAL 67 (91)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~~~~~-~~~qrLI~~Gk~L-~D~~tL~~~ 67 (91)
-+-|+.+.||+++...|..... .+ .+.+-| |-+..+ .-+.+++++
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~--------l~~~~alfl-~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIH--------LRPEDALFF-FVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTT--------CCTTSCCEE-EBTTBCCCTTSBHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhc--------CCCCCcEEE-EECCEecCccChHHHH
Confidence 3567788999999988887631 23 344555 555555 557777765
No 213
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.40 E-value=58 Score=15.10 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=9.2
Q ss_pred CcHHHHHHHHhh
Q psy5872 21 DSAGDIAQHVFD 32 (91)
Q Consensus 21 ~TV~~lK~~I~~ 32 (91)
..|+.||++|+.
T Consensus 14 qkiaalkqkias 25 (28)
T 3ra3_A 14 QKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 357888988876
Done!