RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5872
(91 letters)
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: d.15.1.1
Length = 116
Score = 133 bits (336), Expect = 2e-42
Identities = 72/91 (79%), Positives = 78/91 (85%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS 60
INLRLILVSGKTKEFLFSP+DSA DIA+HV+DNWP DW +E V+ +ILRLIYQGRFLH
Sbjct: 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76
Query: 61 NVTLGALGLTCSKTTVMHLVPRENLPEPNSQ 91
NVTLGAL L KTTVMHLV RE LPEPNSQ
Sbjct: 77 NVTLGALKLPFGKTTVMHLVARETLPEPNSQ 107
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural
genomics, protein structure initiative, PSI; NMR {Homo
sapiens}
Length = 125
Score = 128 bits (324), Expect = 1e-40
Identities = 72/91 (79%), Positives = 78/91 (85%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS 60
INLRLILVSGKTKEFLFSP+DSA DIA+HV+DNWP DW +E V+ +ILRLIYQGRFLH
Sbjct: 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77
Query: 61 NVTLGALGLTCSKTTVMHLVPRENLPEPNSQ 91
NVTLGAL L KTTVMHLV RE LPEPNSQ
Sbjct: 78 NVTLGALKLPFGKTTVMHLVARETLPEPNSQ 108
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural
genomics, protein structure initiative, CESG; NMR
{Arabidopsis thaliana} SCOP: d.15.1.1
Length = 126
Score = 88.9 bits (220), Expect = 9e-25
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 1 INLRLILVSGK-TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLH 59
+ ++ L G F + + + + V WP + + ++LI G+ L
Sbjct: 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREK-ENGPKTVKEVKLISAGKVLE 75
Query: 60 SNVTLGALGLTCSKT----TVMHLVPRENLPEPNSQ 91
++ T+ S T MH++ + + E +
Sbjct: 76 NSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKEKK 111
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23);
'structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 95
Score = 42.7 bits (100), Expect = 5e-07
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 14/92 (15%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLH- 59
IN+RL ++ + + P D+ G + F + ++LIYQGR L
Sbjct: 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFP-----------GQESQMKLIYQGRLLQD 56
Query: 60 SNVTLGALGLTCSKTTVMHLVPRENLPEPNSQ 91
TL +L +T V+H +
Sbjct: 57 PARTLSSLNIT--NNCVIHCHRSPPGAAVSGP 86
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G*
2noq_F 1s1h_G 3iz6_F
Length = 225
Score = 39.0 bits (91), Expect = 3e-05
Identities = 3/80 (3%), Positives = 10/80 (12%), Gaps = 13/80 (16%)
Query: 6 ILV---SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNV 62
+ + + A+ +I
Sbjct: 3 DTEAPVEVQEDFEVVEEFTPVVLATPIP--------EEVQQAQTEIKLFNKWSFEEVEVK 54
Query: 63 TLGALGLTCSKTTVMHLVPR 82
+ + V
Sbjct: 55 DASLVDYVQVRQ--PIFVAH 72
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident
ubiquitin-like domain member...; ENDPLASMIC reticulum
stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 93
Score = 36.9 bits (85), Expect = 8e-05
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 14 EFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSK 73
E S G + H+ +PE + + RLIY G+ L + L L K
Sbjct: 23 ELSGDRGWSVGHLKAHLSRVYPERP------RPEDQRLIYSGKLLLDHQCLRDLLPKQEK 76
Query: 74 TTVMHLVPR 82
V+HLV
Sbjct: 77 RHVLHLVCN 85
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_9
Length = 189
Score = 37.4 bits (86), Expect = 2e-04
Identities = 9/83 (10%), Positives = 21/83 (25%), Gaps = 24/83 (28%)
Query: 6 ILV---SGKTKEFLFSPSDSAGDIAQHVFD---NWPEDWSDEAVAKADILRLIYQGRFLH 59
+ V G+TK + S D+ + + + L+ G
Sbjct: 3 VQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDM-----------MTLVNNGFIAP 51
Query: 60 SNVTLGALGLTCSKTTVMHLVPR 82
+ + +L +
Sbjct: 52 N-------TELVTDDVTYYLSLK 67
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair,
proteasome-mediated degradation, protein- protein
interaction, replication; NMR {Homo sapiens} SCOP:
a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Length = 368
Score = 36.5 bits (83), Expect = 3e-04
Identities = 10/83 (12%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+T + P ++ + + + D +LIY G+ L +V +
Sbjct: 16 QQQTFKIRMEPDETVKVLKEKIEAEKGRD-----AFPVAGQKLIYAGKILSDDVPIRDYR 70
Query: 69 LTCSKTTVMHLVPRENLPEPNSQ 91
+ V+ + + ++
Sbjct: 71 IDEKNFVVVMVTKTKAGQGTSAP 93
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: d.15.1.1
Length = 107
Score = 35.2 bits (80), Expect = 5e-04
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 40 DEAVAKADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHLVPRENLPEPNS 90
E+V +++ LIY GR L + TL G+ T +H++ R++ P+S
Sbjct: 59 QESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGST--VHVL-RKSWSGPSS 106
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein;
ubiquitin-like domain, solution structure, signaling
protein; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 106
Score = 34.3 bits (79), Expect = 9e-04
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 14/82 (17%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFD--NWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGA 66
+GK + + +D+ + + + R + GR L +
Sbjct: 32 TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQ----------RWFFSGRPLTDKMKFEE 81
Query: 67 LGLTCSKTTVMHLVPRENLPEP 88
L + K V+ ++ + + P
Sbjct: 82 LKIP--KDYVVQVIVSQPVQNP 101
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15,
structure, northeast structural genomics consortium,
protein structure initiative, NESG; NMR {Homo sapiens}
Length = 88
Score = 33.5 bits (77), Expect = 0.001
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
Query: 6 ILV---SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNV 62
ILV G++ + + + + Q V S + D+ L ++G+ L +
Sbjct: 7 ILVRNNKGRSSTYEVRLTQTVAHLKQQV--------SGLEGVQDDLFWLTFEGKPLEDQL 58
Query: 63 TLGALGLTCSKTTVMHLVPR 82
LG GL + + + R
Sbjct: 59 PLGEYGLK--PLSTVFMNLR 76
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 81
Score = 33.0 bits (76), Expect = 0.002
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 10 GKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGL 69
G+ + + Q V S++ RL+++G+ L L +
Sbjct: 17 GRECSLQVPEDELVSTLKQLV--------SEKLNVPVRQQRLLFKGKALADGKRLSDYSI 68
Query: 70 TCSKTTVMHLVPR 82
+ ++LV +
Sbjct: 69 --GPNSKLNLVVK 79
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3
protein, PF00240, structural GEN joint center for
structural genomics, JCSG; 1.80A {Homo sapiens} PDB:
1wx9_A
Length = 90
Score = 33.0 bits (76), Expect = 0.002
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 15/76 (19%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFD--NWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGA 66
+T+ F+ + + +H+ + P ++ RLIYQGR L + L
Sbjct: 14 DSQTRTFIVGAQMNVKEFKEHIAASVSIP----------SEKQRLIYQGRVLQDDKKLQE 63
Query: 67 LGLTCSKTTVMHLVPR 82
+ + HLV R
Sbjct: 64 YNV--GGKVI-HLVER 76
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase,
DE-isgylase, hydrolase-protein complex; 1.60A {Homo
sapiens}
Length = 79
Score = 32.4 bits (74), Expect = 0.003
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
Query: 6 ILV---SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNV 62
ILV G++ + + + + Q V S + D+ L ++G+ L +
Sbjct: 7 ILVRNNKGRSSTYEVRLTQTVAHLKQQV--------SGLEGVQDDLFWLTFEGKPLEDQL 58
Query: 63 TLGALGLTCSKTTVMHLVPR 82
LG GL + + + R
Sbjct: 59 PLGEYGLK--PLSTVFMNLR 76
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold,
GP78-binding, chaperone; 1.30A {Homo sapiens}
Length = 88
Score = 32.3 bits (74), Expect = 0.004
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+T+ F+ + + +H+ + ++ ++ RLIYQGR L + L
Sbjct: 26 DSQTRTFIVGAQMNVKEFKEHIAAS-------VSIP-SEKQRLIYQGRVLQDDKKLQEYN 77
Query: 69 LTCSKTTVMHLVPR 82
+ V+HLV R
Sbjct: 78 VGGK---VIHLVER 88
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K
4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Length = 128
Score = 32.7 bits (74), Expect = 0.005
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+GKT SD+ ++ + D D RLI+ G+ L TL
Sbjct: 9 TGKTITLEVESSDTIDNVKSKIQDK--------EGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 69 LTCSKTTVMHLVPR 82
+ T + L R
Sbjct: 61 IQKESTLHLVLRLR 74
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident
ubiquitin-like domain member...; UBL domain, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 99
Score = 32.2 bits (73), Expect = 0.005
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 14 EFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGLTCSK 73
+ + G + H+ + +P RL+Y GR L ++ L + +
Sbjct: 39 TISCFLNWTVGKLKTHLSNVYPSK------PLTKDQRLVYSGRLLPDHLQLKDILRKQDE 92
Query: 74 TTVMHLV 80
++HLV
Sbjct: 93 YHMVHLV 99
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.006
Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 5 LILVSGKTKEFLFSPSDSAGDIAQHVFD--NW---PEDWSDEA-VAKADI-LRLI--YQG 55
LI S +T L + A + + W P + D+ + I LI Q
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ- 245
Query: 56 RFLHSNVTLGALGLT 70
H VT LG T
Sbjct: 246 -LAHYVVTAKLLGFT 259
Score = 29.2 bits (65), Expect = 0.14
Identities = 13/50 (26%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 5 LILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQ 54
LI F+ D I V+D D SD V I I
Sbjct: 438 LINKDLVKNNVSFNAKD----IQIPVYD--TFDGSDLRVLSGSISERIVD 481
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome,
ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A
2zeq_A 2knb_A 1iyf_A
Length = 76
Score = 31.5 bits (72), Expect = 0.006
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
S S + + V + + AD LR+I+ G+ L +++T+
Sbjct: 9 SSYGFPVEVDSDTSILQLKEVV--------AKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 69 LTCSKTTVMHLVPR 82
L + +++H+V R
Sbjct: 61 L--EQQSIVHIVQR 72
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis,
signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1
PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B
2nvu_I* 3dqv_A 1bt0_A
Length = 76
Score = 31.4 bits (72), Expect = 0.007
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 14/73 (19%)
Query: 10 GKTKEFLFSPSDSAGDIAQHVFD--NWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGAL 67
GK E P+D I + V + P RLIY G+ ++ T
Sbjct: 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ----------RLIYSGKQMNDEKTAADY 59
Query: 68 GLTCSKTTVMHLV 80
+ +V+HLV
Sbjct: 60 KIL--GGSVLHLV 70
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae}
Length = 106
Score = 32.0 bits (73), Expect = 0.008
Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 10/82 (12%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+ PS++ + + + + ++LIY G+ L + T+ G
Sbjct: 10 KKEKVPLDLEPSNTILETKTKL--------AQSISCEESQIKLIYSGKVLQDSKTVSECG 61
Query: 69 LTCSKTTVMHLVPRENLPEPNS 90
L V + +
Sbjct: 62 LK-DGDQV-VFMVSQKKSTKTK 81
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 96
Score = 31.6 bits (72), Expect = 0.009
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 14/76 (18%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFD--NWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGA 66
EF + + + + + + D L LI+ G+ L L
Sbjct: 25 PQDCHEFFLAENSNVRRFKKQISKYLHCNADR----------LVLIFTGKILRDQDILSQ 74
Query: 67 LGLTCSKTTVMHLVPR 82
G+ + +H+V R
Sbjct: 75 RGIL--DGSTVHVVVR 88
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding
protein, DNA excision repair, proteasomal degrad
polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U
1p1a_A
Length = 85
Score = 31.1 bits (71), Expect = 0.010
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 10 GKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGL 69
+T + P ++ + + + D +LIY G+ L +V + +
Sbjct: 15 QQTFKIRMEPDETVKVLKEKIEAEKGRD-----AFPVAGQKLIYAGKILSDDVPIRDYRI 69
Query: 70 TCSKTTVMHLVPR 82
K V+ +V +
Sbjct: 70 D-EKNFVVVMVTK 81
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein
structur initiative, northeast structural genomics
consortium, NESG; NMR {Homo sapiens}
Length = 101
Score = 31.2 bits (71), Expect = 0.012
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+ +EF + S + + S + D L LI+ G+ L TL G
Sbjct: 33 PKEKEEFAVPENSSVQQFKEEI--------SKRFKSHTDQLVLIFAGKILKDQDTLSQHG 84
Query: 69 LTCSKTTVMHLVPR 82
+ +HLV +
Sbjct: 85 IH--DGLTVHLVIK 96
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB:
1zkh_A
Length = 115
Score = 31.3 bits (71), Expect = 0.014
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFD--NWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGA 66
+G+ F +D I + + P A +L Y+G F+ + +L
Sbjct: 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMP----------AGKQKLQYEGIFIKDSNSLAY 93
Query: 67 LGLTCSKTTVMHLVPRE 83
+ V+HL +E
Sbjct: 94 YNMA--SGAVIHLALKE 108
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin,
ubiquitin-like domain, structural genomics, signaling
protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Length = 100
Score = 30.8 bits (70), Expect = 0.017
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 4 RLILVSGKT----KEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLH 59
LI V+ KT ++F + + + + + + S A D L LI+ G+ L
Sbjct: 21 HLIKVTVKTPKDKEDFSVTDTCTIQQLKEEI--------SQRFKAHPDQLVLIFAGKILK 72
Query: 60 SNVTLGALGLTCSKTTVMHLVPR 82
+L G+ T +HLV +
Sbjct: 73 DPDSLAQCGVRDGLT--VHLVIK 93
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural
genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 125
Score = 31.4 bits (71), Expect = 0.017
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 4 RLILVSGKT----KEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLH 59
++I V+ KT +EF + S + + S ++ D L LI+ G+ L
Sbjct: 31 KIIKVTVKTPKEKEEFAVPENSSVQQFKEAI--------SKRFKSQTDQLVLIFAGKILK 82
Query: 60 SNVTLGALGLTCSKTTVMHLVPR 82
TL G+ +HLV +
Sbjct: 83 DQDTLIQHGIH--DGLTVHLVIK 103
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; NMR {Homo sapiens}
Length = 93
Score = 30.9 bits (70), Expect = 0.018
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 10/73 (13%)
Query: 10 GKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGL 69
+ F + ++ I HV + + ++ G L TLG G+
Sbjct: 27 QELHTFEVTGQETVAQIKAHV--------ASLEGIAPEDQVVLLAGAPLEDEATLGQCGV 78
Query: 70 TCSKTTVMHLVPR 82
T + + R
Sbjct: 79 --EALTTLEVAGR 89
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase,
deamidati bacterial effector, cell cycle-protein
binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Length = 88
Score = 30.4 bits (69), Expect = 0.020
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 14/73 (19%)
Query: 10 GKTKEFLFSPSDSAGDIAQHVFD--NWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGAL 67
GK E P+D I + V + P RLIY G+ ++ T
Sbjct: 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ----------RLIYSGKQMNDEKTAADY 59
Query: 68 GLTCSKTTVMHLV 80
+ +V+HLV
Sbjct: 60 KIL--GGSVLHLV 70
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 106
Score = 30.8 bits (70), Expect = 0.021
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 15/76 (19%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFD--NWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGA 66
K +F + + + + + + D L LI+ G+ L +L
Sbjct: 26 KDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQ----------LVLIFAGKILKDPDSLAQ 74
Query: 67 LGLTCSKTTVMHLVPR 82
G+ +HLV +
Sbjct: 75 CGVR--DGLTVHLVIK 88
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL,
ubiquitin family, structural genomics; NMR {Homo
sapiens} SCOP: d.15.1.1
Length = 87
Score = 30.0 bits (68), Expect = 0.029
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 10 GKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGL 69
G + + +P+ + Q + D+ +L +QG+ L + LG G+
Sbjct: 17 GGSYAYAINPNSFILGLKQQI--------EDQQGLPKKQQQLEFQGQVLQDWLGLGIYGI 68
Query: 70 TCSKTTVMHLVPR 82
S T + L +
Sbjct: 69 QDSDT--LILSKK 79
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL
conjugation pathway, ATP-binding, ligase, nucleotide-
binding, polymorphism; 2.85A {Homo sapiens} SCOP:
k.45.1.1 PDB: 3dbr_I 3dbl_I
Length = 88
Score = 30.0 bits (68), Expect = 0.035
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 14/74 (18%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFD--NWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGA 66
+GK E P+D I + V + P RLIY G+ ++ T
Sbjct: 21 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ----------RLIYSGKQMNDEKTAAD 70
Query: 67 LGLTCSKTTVMHLV 80
+ +V+HLV
Sbjct: 71 YKIL--GGSVLHLV 82
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 95
Score = 30.0 bits (68), Expect = 0.037
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 10 GKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALGL 69
+T + P ++ + + + +D +LIY G+ L+ + L +
Sbjct: 10 QQTFKIDIDPEETVKALKEKIESEKGKD-----AFPVAGQKLIYAGKILNDDTALKEYKI 64
Query: 70 TCSKTTVMHLVPRENLPEPNS 90
V+ + + + P
Sbjct: 65 DEKNFVVVMVTKPKAVSTPAP 85
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific
protease activity, hydrolase, ubiquitin B structural
genomics consortium, SGC; 2.70A {Homo sapiens}
Length = 85
Score = 29.6 bits (67), Expect = 0.039
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+GKT PSD+ ++ + D D RLI+ G+ L TL
Sbjct: 12 TGKTITLEVEPSDTIENVKAKIQDK--------EGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 69 LTCSKTTVMHLV 80
+ K + + L+
Sbjct: 64 IQ--KWSTLFLL 73
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling
proteins; 1.15A {Saccharomyces cerevisiae} SCOP:
d.15.1.1 PDB: 2bwe_S
Length = 77
Score = 29.5 bits (67), Expect = 0.044
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 14/79 (17%)
Query: 6 ILVSGKTKEFLFSPSDSAGDIAQHVFD--NWPEDWSDEAVAKADILRLIYQGRFLHSNVT 63
I E +P + + + P RLIY G+ L + T
Sbjct: 9 IKSGQDKWEVNVAPESTVLQFKEAINKANGIP----------VANQRLIYSGKILKDDQT 58
Query: 64 LGALGLTCSKTTVMHLVPR 82
+ + + +HLV
Sbjct: 59 VESYHI--QDGHSVHLVKS 75
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein
AT2G30105; ubiquitin-like protein, NESG, leucine-rich
repeat, structural genomics; NMR {Arabidopsis thaliana}
Length = 85
Score = 29.6 bits (67), Expect = 0.046
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 18/76 (23%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADIL----RLIYQGRFLHSNVTL 64
GK+ SP + D+ + ++L +LI++G+ L TL
Sbjct: 20 GGKSIPLSVSPDCTVKDLKSQLQP------------ITNVLPRGQKLIFKGKVLVETSTL 67
Query: 65 GALGLTCSKTTVMHLV 80
+ + L+
Sbjct: 68 KQSDVGSGAK--LMLM 81
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Length = 111
Score = 29.4 bits (66), Expect = 0.079
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 15/77 (19%)
Query: 10 GKTKEFLFSP-SDSAGDIAQHVFD--NWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGA 66
G+ E S++ G + + + P A+ +L + FL N++L
Sbjct: 40 GQFMEITVQSLSENVGSLKEKIAGEIQIP----------ANKQKLSGKAGFLKDNMSLAH 89
Query: 67 LGLTCSKTTVMHLVPRE 83
+ ++ L RE
Sbjct: 90 YNVG--AGEILTLSLRE 104
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation,
antiviral protein-viral P complex; 2.01A {Homo sapiens}
PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Length = 159
Score = 29.5 bits (66), Expect = 0.10
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 8 VSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGAL 67
G++ + + + + Q V + D+ L ++G+ L + LG
Sbjct: 89 NKGRSSTYEVRLTQTVAHLKQQVSGLEG--------VQDDLFWLTFEGKPLEDQLPLGEY 140
Query: 68 GLTCSKTTVMHLVPR 82
GL + + + R
Sbjct: 141 GLK--PLSTVFMNLR 153
Score = 24.9 bits (54), Expect = 4.4
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 10/68 (14%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQ--GRFLHSNVTLGA 66
+G + S S S ++ + + RL G L V L +
Sbjct: 11 AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQ--------RLAVHPSGVALQDRVPLAS 62
Query: 67 LGLTCSKT 74
GL T
Sbjct: 63 QGLGPGST 70
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon,
inhibitor, ubiqu acetylation, cytoplasm, isopeptide
bond, nucleus; 2.60A {Homo sapiens}
Length = 85
Score = 28.5 bits (64), Expect = 0.10
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
G+T PSD+ ++ + D E D RLI+ G+ L TL
Sbjct: 12 MGRTIILEVEPSDTIENVKAKIQDK--EGIP------PDQQRLIFAGKQLEDGRTLSDYN 63
Query: 69 LTCSKTTVMHLV 80
+ + ++L+
Sbjct: 64 IH--NHSALYLL 73
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond,
metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B
2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A
2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A
1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Length = 76
Score = 28.0 bits (63), Expect = 0.15
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+GKT PSD+ ++ + D E + D RLI+ G+ L TL
Sbjct: 9 TGKTITLEVEPSDTIENVKAKIQDK-------EGIP-PDQQRLIFAGKQLEDGRTLSDYN 60
Query: 69 LTCSKTTVMHLV 80
+ + + +HLV
Sbjct: 61 IQ--RESTLHLV 70
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain,
protein binding; HET: ADP; 2.90A {Rattus norvegicus}
SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Length = 127
Score = 28.7 bits (64), Expect = 0.15
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLH- 59
N+++ L G F+ S DI + D P + V L + + L
Sbjct: 53 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFV-----LMTTFPNKELAD 107
Query: 60 SNVTLGALGL 69
N TL L
Sbjct: 108 ENQTLKEANL 117
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding,
isopeptide BO ligase, nucleotide-binding, UBL
conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A
2kx0_A
Length = 96
Score = 28.2 bits (63), Expect = 0.15
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+GKT PSD+ ++ + D E + D RLI+ G+ L TL
Sbjct: 10 TGKTITLEVEPSDTIENVKAKIQDK-------EGIP-PDQQRLIFAGKQLEDGRTLSDYN 61
Query: 69 LTCSKTTVMHLV 80
+ K + +HLV
Sbjct: 62 IQ--KESTLHLV 71
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats,
UBL conjugation pathway, nucleus, phosphoprotein; HET:
1PE; 2.40A {Saccharomyces cerevisiae}
Length = 101
Score = 28.5 bits (64), Expect = 0.16
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 14/79 (17%)
Query: 6 ILVSGKTKEFLFSPSDSAGDIAQHVFD--NWPEDWSDEAVAKADILRLIYQGRFLHSNVT 63
I E +P + + + P RLIY G+ L + T
Sbjct: 33 IKSGQDKWEVNVAPESTVLQFKEAINKANGIP----------VANQRLIYSGKILKDDQT 82
Query: 64 LGALGLTCSKTTVMHLVPR 82
+ + + +HLV
Sbjct: 83 VESYHI--QDGHSVHLVKS 99
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion
protein; ubiquitin interacting motif, UIM, protein
domain interface; NMR {Saccharomyces cerevisiae}
Length = 114
Score = 28.2 bits (63), Expect = 0.19
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+GKT SD+ ++ + D D RLI+ G+ L TL
Sbjct: 18 TGKTITLEVESSDTIDNVKSKIQDK--------EGIPPDQQRLIWAGKQLEDGRTLSDYN 69
Query: 69 LTCSKTTVMHLVPR 82
+ + + +HLV R
Sbjct: 70 IQ--RESTLHLVLR 81
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural
protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Length = 88
Score = 27.3 bits (61), Expect = 0.35
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+GKT PSD+ ++ + D E + D RLI+ G+ L TL
Sbjct: 18 TGKTFTVEMEPSDTIENLKAKIQDK-------EGIP-PDQQRLIFAGKQLEDGRTLSDYN 69
Query: 69 LTCSKTTVMHLV 80
+ K + +HLV
Sbjct: 70 IQ--KESTLHLV 79
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein
binding; 2.60A {Homo sapiens}
Length = 111
Score = 27.1 bits (60), Expect = 0.45
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+GKT PSD+ ++ + D D RLI+ G+ L TL
Sbjct: 44 TGKTITLEVEPSDTIENVKAKIQDK--------EGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 69 LTCSKTTVMHLV 80
+ K + +HLV
Sbjct: 96 IQ--KESTLHLV 105
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP:
d.15.1.1 PDB: 1yx6_B
Length = 98
Score = 27.1 bits (60), Expect = 0.46
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+GKT PSD+ ++ + D E + D RLI+ G+ L TL
Sbjct: 9 TGKTITLEVEPSDTIENVKAKIQDK-------EGIP-PDQQRLIFAGKQLEDGRTLSDYN 60
Query: 69 LTCSKTTVMHLV 80
+ K + +HLV
Sbjct: 61 IQ--KESTLHLV 70
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
PDB: 2kxj_A
Length = 109
Score = 26.7 bits (59), Expect = 0.70
Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 11/87 (12%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS 60
++ L G + F + Q + + + L ++ R
Sbjct: 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFS------LATMFPRREFTR 67
Query: 61 ---NVTLGALGLTCSKTTVMHLVPREN 84
L L L S + L+P
Sbjct: 68 EDYKRRLLDLELAPS--ASVVLLPAGR 92
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 26.0 bits (58), Expect = 1.9
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 9/48 (18%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADI 48
IN+ L T E + + + D + VA A I
Sbjct: 167 INMLL------TGERVVDRNWALE---GGFIDLASGTVEADLVALAHI 205
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 25.7 bits (57), Expect = 2.2
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 17/52 (32%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAG----DIAQHVFDNWPEDWSDEAVAKADI 48
+ LRL T ++++ W E +A
Sbjct: 165 VVLRL------TGRHATDRTNASTTGLYRPKDD-------AWHVELLADYGF 203
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen,
proliferating cell nuclear antigen; replication, DNA
damage, DNA repair; 2.80A {Saccharomyces cerevisiae}
PDB: 3l10_B
Length = 169
Score = 25.7 bits (56), Expect = 2.2
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+GKT SD+ ++ + D E + RLI+ G+ L TL
Sbjct: 9 TGKTITLEVESSDTIDNVKSKIQDK-------EGIPPDQQ-RLIFAGKQLEDGRTLSDYN 60
Query: 69 LTCSKTTVMHLVPR 82
+ K + +HLV R
Sbjct: 61 IQ--KESTLHLVLR 72
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 25.5 bits (56), Expect = 2.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 47 DILRLIYQGRFLHSNVTLGAL 67
++R +YQG FL ++++ AL
Sbjct: 285 GVVRSMYQGLFLAPHISMEAL 305
>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix,
OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A
Length = 313
Score = 25.1 bits (55), Expect = 3.6
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 6/32 (18%)
Query: 51 LIYQGRFLHSNVTLGALGLTCSKTTVMHLVPR 82
IYQ VTLGA+ + R
Sbjct: 197 RIYQS------VTLGAMHFQEEGGVIKRGTKR 222
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 24.7 bits (53), Expect = 4.0
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 46 ADILRLIYQGRFLHSNVTLGALGLTCSKTTVMHL 79
+L++ Y G+ L +N TL G+ + + +
Sbjct: 54 HSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEI 87
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling
protein-metal binding protein COM; HET: TRE; 1.70A
{Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A
2zvo_A 2y5b_B
Length = 152
Score = 24.6 bits (53), Expect = 4.9
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNW--PEDWSDEAVAKADILRLIYQGRFLHSNVTLGA 66
+GKT PSD+ ++ + D P D RLI+ G+ L TL
Sbjct: 9 TGKTITLEVEPSDTIENVKAKIQDKEGIP----------PDQQRLIFAGKQLEDGRTLSD 58
Query: 67 LGLTCSKTTVMHLVPR 82
+ K + +HLV R
Sbjct: 59 YNI--QKESTLHLVLR 72
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 24.5 bits (54), Expect = 5.9
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADI 48
+ LR+ T EF SD+AG D DWSD + D+
Sbjct: 156 LRLRM------TGEFASDMSDAAG---TMWLDVAKRDWSDVMLQACDL 194
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 24.4 bits (54), Expect = 6.6
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 63 TLGALGLT-CSKTTVMHLVPR 82
+ LG T K+T+M+L+PR
Sbjct: 371 LVAVLGETGSGKSTLMNLIPR 391
>1onq_A T-cell surface glycoprotein CD1A; protein-glycolipid complex, beta
sheet platform,, immune SYS; HET: NAG FUC SLF; 2.15A
{Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1xz0_A*
Length = 283
Score = 24.1 bits (53), Expect = 7.6
Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 19 PSDSAGDIAQHVFDNWPEDWSDEAVAK 45
P AG++A+H ++
Sbjct: 133 PYPVAGNMAKHFCKVL---NQNQHEND 156
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 24.1 bits (53), Expect = 7.8
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 17/52 (32%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAG----DIAQHVFDNWPEDWSDEAVAKADI 48
I RL T + + + +AG ++ W E + I
Sbjct: 161 IIFRL------TGKLVTDTTMAAGTGILNLKTL-------TWDQELLDILKI 199
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance;
putative cystathionine beta-lyase involved in aluminum
resis structural genomics; HET: LLP; 1.91A {Listeria
monocytogenes str} PDB: 3fd0_A*
Length = 409
Score = 24.0 bits (52), Expect = 9.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 47 DILRLIYQGRFLHSNVTLGAL 67
L +YQG FL +VT A+
Sbjct: 268 YSLLEMYQGFFLAPHVTAQAI 288
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.407
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,424,155
Number of extensions: 71288
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 66
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)