RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5872
(91 letters)
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 116
Score = 102 bits (255), Expect = 1e-30
Identities = 72/91 (79%), Positives = 78/91 (85%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS 60
INLRLILVSGKTKEFLFSP+DSA DIA+HV+DNWP DW +E V+ +ILRLIYQGRFLH
Sbjct: 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76
Query: 61 NVTLGALGLTCSKTTVMHLVPRENLPEPNSQ 91
NVTLGAL L KTTVMHLV RE LPEPNSQ
Sbjct: 77 NVTLGALKLPFGKTTVMHLVARETLPEPNSQ 107
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 101
Score = 76.9 bits (189), Expect = 9e-21
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 1 INLRLILVSGK-TKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLH 59
+ ++ L G F + + + + V WP + ++LI G+ L
Sbjct: 8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKE-NGPKTVKEVKLISAGKVLE 66
Query: 60 SNVTLG----ALGLTCSKTTVMHLVPRENLPEPN 89
++ T+ + T MH++ + + E
Sbjct: 67 NSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKE 100
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1
protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 42.2 bits (99), Expect = 3e-07
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 1 INLRLILVSGKTKEFLFS--PSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFL 58
+ L + + + ++ S S G + H+ +PE + RLIY G+ L
Sbjct: 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPR------PEDQRLIYSGKLL 61
Query: 59 HSNVTLGALGLTCSKTTVMHLV 80
+ L L K V+HLV
Sbjct: 62 LDHQCLRDLLPKQEKRHVLHLV 83
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog
A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 34.1 bits (78), Expect = 3e-04
Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS 60
+ + L + +T + P ++ + + + D +LIY G+ L
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP-----VAGQKLIYAGKILSD 57
Query: 61 NVTLGALGLTCSKTTVMHLV 80
+V + + K V+ +V
Sbjct: 58 DVPIRDYRID-EKNFVVVMV 76
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500
(2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 34.1 bits (78), Expect = 4e-04
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS 60
IN+RL ++ + + P D+ G + F ++LIYQGR L
Sbjct: 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQESQ-----------MKLIYQGRLLQD 56
Query: 61 NV-TLGALGLTCSKTTVMHLVPRENLPEPNS 90
TL +L +T + H P S
Sbjct: 57 PARTLSSLNITNNCVIHCHRSPPGAAVSGPS 87
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 73
Score = 33.7 bits (77), Expect = 4e-04
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+GK E P+D+ I + V + RLIY G+ L + T
Sbjct: 9 TGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQ--------QRLIYAGKQLADDKTAKDYN 60
Query: 69 LTCSKTTVMHLVPR 82
+ +V+HLV
Sbjct: 61 IE--GGSVLHLVLA 72
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 33.9 bits (77), Expect = 5e-04
Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+T + P ++ + + + +D +LIY G+ L+ + L
Sbjct: 9 QQQTFKIDIDPEETVKALKEKIESEKGKDAFP-----VAGQKLIYAGKILNDDTALKEYK 63
Query: 69 LTCSKTTVMHLVPRENLPEPNS 90
+ V+ + + + P
Sbjct: 64 IDEKNFVVVMVTKPKAVSTPAP 85
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 33.3 bits (76), Expect = 8e-04
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 4 RLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVT 63
++ + S + Q + E V +++ LIY GR L + T
Sbjct: 21 SILQLPETELGEYSLGGYSISFLKQLIAGKLQES-----VPDPELIDLIYCGRKLKDDQT 75
Query: 64 LGALGLTCSKTTVMHLVPR 82
L G+ + +H++ +
Sbjct: 76 LDFYGIQ--PGSTVHVLRK 92
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 32.2 bits (73), Expect = 0.001
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 1 INLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHS 60
LRL L +GK + + +D+ + + + + + R + GR L
Sbjct: 4 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQ--------RWFFSGRPLTD 55
Query: 61 NVTLGALGLTCSKTTVMHLVPRENLPEPN 89
+ L + K V+ ++ P N
Sbjct: 56 KMKFEELKIP--KDYVVQVIVS--QPVQN 80
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 31.0 bits (70), Expect = 0.005
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
+T+ F+ + + +H+ + + RLIYQGR L + L
Sbjct: 9 DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQ--------RLIYQGRVLQDDKKLQEYN 60
Query: 69 LTCSKTTVMHLVPR 82
+ V+HLV R
Sbjct: 61 V---GGKVIHLVER 71
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 29.1 bits (65), Expect = 0.022
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
G++ + + + + Q V + D+ L ++G+ L + LG G
Sbjct: 12 KGRSSTYEVRLTQTVAHLKQQVSGLE--------GVQDDLFWLTFEGKPLEDQLPLGEYG 63
Query: 69 LTCSKTTVMHLVPR 82
L + + + R
Sbjct: 64 LK--PLSTVFMNLR 75
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like
protein, OASL {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 28.7 bits (64), Expect = 0.033
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
G + + +P+ + Q + D + +L +QG+ L + LG G
Sbjct: 16 DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQ--------QLEFQGQVLQDWLGLGIYG 67
Query: 69 LTCSKTTVMHLVPRE 83
+ + + L ++
Sbjct: 68 IQ--DSDTLILSKKK 80
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 28.3 bits (63), Expect = 0.042
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 12/81 (14%)
Query: 2 NLRLILVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQ--GRFLH 59
+L + +++G + S S S ++ + RL G L
Sbjct: 2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHA--------FQQRLAVHPSGVALQ 53
Query: 60 SNVTLGALGLTCSKTTVMHLV 80
V L + GL + + LV
Sbjct: 54 DRVPLASQGLG--PGSTVLLV 72
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 26.3 bits (58), Expect = 0.34
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 14/85 (16%)
Query: 5 LILVSGKTKEFL-FSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVT 63
L++ KT F S + ++ + V + RL + L T
Sbjct: 4 LMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDE--------QRLYKDDQLLDDGKT 55
Query: 64 LGALGLTCS-----KTTVMHLVPRE 83
LG G T + L R
Sbjct: 56 LGECGFTSQTARPQAPATVGLAFRA 80
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts),
dimerisation domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 109
Score = 25.6 bits (56), Expect = 0.69
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 7 LVSGKTKEFLFSPSDSAGDIAQHVFDNWPEDWS--DEAVAKADILRLIYQGRFLHSNVTL 64
LV +T E + +D + QHV P D+ +++ Q L ++TL
Sbjct: 28 LVICETSELKANLADLGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQPYLLDPSITL 87
Query: 65 GAL 67
G
Sbjct: 88 GQY 90
>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer
{Caenorhabditis elegans [TaxId: 6239]}
Length = 250
Score = 24.4 bits (52), Expect = 2.0
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 25 DIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVT 63
++ E + E ++ + L + GRF N+
Sbjct: 208 NLGGKNAALTVEQSTAELISSFNKLDNSHNGRFFMRNLK 246
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 73
Score = 23.9 bits (51), Expect = 2.2
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 10/71 (14%)
Query: 9 SGKTKEFLFSPSDSAGDIAQHVFDNWPEDWSDEAVAKADILRLIYQGRFLHSNVTLGALG 68
GK DS GD + + + + L G L +++L
Sbjct: 10 LGKKVRVKCLAEDSVGDFKKVLSLQIGTQP--------NKIVLQKGGSVLKDHISLEDYE 61
Query: 69 LTCSKTTVMHL 79
+ T + L
Sbjct: 62 V--HDQTNLEL 70
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 301
Score = 23.3 bits (49), Expect = 5.4
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 27 AQHVFDNWPEDWSDEAVAKADILRLI 52
A + F N P++W D K I L
Sbjct: 267 AYYGFKNIPKEWIDGLKNKEVIFELA 292
>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 22.5 bits (48), Expect = 8.0
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 31 FDNWPEDWSDEAVAKA 46
F W + E +A+A
Sbjct: 23 FGTWIYSVNKEQLARA 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.407
Gapped
Lambda K H
0.267 0.0628 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 342,896
Number of extensions: 13375
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 21
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)