Query psy5876
Match_columns 143
No_of_seqs 175 out of 1307
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 20:19:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2314|consensus 99.9 1.5E-26 3.3E-31 192.2 3.5 134 1-134 498-634 (698)
2 PF08662 eIF2A: Eukaryotic tra 99.8 1.1E-20 2.4E-25 141.9 10.1 86 1-86 106-192 (194)
3 KOG0271|consensus 99.8 8.2E-20 1.8E-24 147.1 8.8 99 1-107 373-476 (480)
4 KOG2315|consensus 99.7 4.2E-18 9.1E-23 141.9 8.6 96 1-96 317-414 (566)
5 KOG0263|consensus 99.7 6E-18 1.3E-22 144.8 9.1 99 1-107 541-644 (707)
6 KOG0271|consensus 99.7 6.3E-18 1.4E-22 136.3 7.5 99 1-107 121-230 (480)
7 KOG0272|consensus 99.7 3.9E-18 8.5E-23 138.3 5.8 99 1-107 267-370 (459)
8 KOG0279|consensus 99.7 9.6E-17 2.1E-21 124.9 10.9 98 2-107 70-175 (315)
9 KOG0266|consensus 99.7 1.6E-16 3.4E-21 132.9 12.5 99 1-107 209-313 (456)
10 KOG0272|consensus 99.7 3.3E-17 7.1E-22 133.0 7.8 99 1-107 309-413 (459)
11 KOG0645|consensus 99.7 1.7E-16 3.7E-21 123.2 11.0 99 1-107 67-175 (312)
12 PF08662 eIF2A: Eukaryotic tra 99.7 9E-16 1.9E-20 115.3 12.2 98 1-103 65-164 (194)
13 PTZ00421 coronin; Provisional 99.7 1.7E-15 3.6E-20 128.0 12.8 99 1-107 81-193 (493)
14 KOG0645|consensus 99.6 2E-15 4.3E-20 117.3 11.2 98 1-106 20-129 (312)
15 KOG0293|consensus 99.6 5.9E-16 1.3E-20 125.9 8.1 99 1-107 230-337 (519)
16 KOG0266|consensus 99.6 2.2E-15 4.7E-20 126.0 11.7 99 1-107 252-359 (456)
17 KOG0275|consensus 99.6 1.9E-16 4.2E-21 126.1 3.8 105 2-114 220-345 (508)
18 KOG0293|consensus 99.6 5.6E-16 1.2E-20 126.0 6.5 99 1-107 275-379 (519)
19 KOG0284|consensus 99.6 2.2E-15 4.9E-20 122.1 8.1 99 1-107 186-289 (464)
20 PTZ00420 coronin; Provisional 99.6 1E-14 2.2E-19 124.8 12.0 99 1-107 80-192 (568)
21 KOG0263|consensus 99.6 3.3E-15 7.2E-20 128.1 7.9 99 1-107 499-602 (707)
22 KOG0273|consensus 99.6 1.8E-14 3.9E-19 118.5 9.9 99 1-107 365-477 (524)
23 KOG1273|consensus 99.6 1.2E-14 2.6E-19 115.2 8.3 92 1-100 29-124 (405)
24 KOG0291|consensus 99.6 2.8E-14 6.1E-19 122.7 10.7 105 1-107 356-503 (893)
25 KOG0273|consensus 99.6 4.4E-14 9.6E-19 116.2 11.1 98 1-106 407-517 (524)
26 KOG0295|consensus 99.5 5.1E-14 1.1E-18 113.0 10.9 93 7-107 304-401 (406)
27 COG5354 Uncharacterized protei 99.5 1.7E-14 3.7E-19 119.7 8.1 134 1-134 321-496 (561)
28 KOG0283|consensus 99.5 2.2E-14 4.9E-19 123.6 8.5 98 1-107 375-476 (712)
29 KOG2394|consensus 99.5 1.8E-14 4E-19 120.2 7.1 92 1-103 296-392 (636)
30 KOG0279|consensus 99.5 1.7E-13 3.6E-18 107.0 9.8 95 1-103 154-254 (315)
31 cd00200 WD40 WD40 domain, foun 99.5 4E-13 8.7E-18 99.7 11.5 99 1-107 183-286 (289)
32 PTZ00421 coronin; Provisional 99.5 3.4E-13 7.4E-18 114.0 12.2 99 1-107 131-240 (493)
33 KOG1407|consensus 99.5 8.1E-14 1.8E-18 108.1 7.7 97 1-105 195-295 (313)
34 KOG0973|consensus 99.5 8.2E-14 1.8E-18 122.8 8.6 99 1-107 75-196 (942)
35 KOG0318|consensus 99.5 3.1E-13 6.6E-18 112.6 11.5 96 1-106 196-302 (603)
36 KOG0291|consensus 99.5 2.5E-13 5.5E-18 116.9 10.6 107 1-114 313-431 (893)
37 KOG0315|consensus 99.5 5E-13 1.1E-17 103.3 10.9 98 2-107 174-283 (311)
38 KOG1407|consensus 99.5 1.8E-13 4E-18 106.1 8.2 99 1-107 112-256 (313)
39 KOG0318|consensus 99.5 4E-13 8.7E-18 111.9 10.8 98 1-106 449-554 (603)
40 KOG0286|consensus 99.5 4.1E-13 8.9E-18 105.5 10.2 101 2-111 152-259 (343)
41 PLN00181 protein SPA1-RELATED; 99.5 6.2E-13 1.3E-17 117.5 12.2 99 1-107 489-601 (793)
42 PTZ00420 coronin; Provisional 99.5 1.4E-12 3E-17 111.8 13.2 96 1-104 131-236 (568)
43 KOG0319|consensus 99.5 3.7E-13 8.1E-18 115.4 9.5 99 1-107 511-614 (775)
44 KOG0973|consensus 99.5 2.7E-13 5.9E-18 119.6 8.9 92 1-100 135-237 (942)
45 cd00200 WD40 WD40 domain, foun 99.4 1.4E-12 3.1E-17 96.7 11.4 99 1-107 15-118 (289)
46 KOG0283|consensus 99.4 1.8E-13 3.9E-18 118.0 6.7 98 1-107 273-435 (712)
47 KOG0772|consensus 99.4 3.9E-13 8.5E-18 112.0 8.0 98 2-107 275-389 (641)
48 KOG0286|consensus 99.4 1.7E-12 3.8E-17 102.0 11.1 99 1-107 235-340 (343)
49 PLN00181 protein SPA1-RELATED; 99.4 2.1E-12 4.5E-17 114.2 12.6 99 1-107 538-643 (793)
50 KOG0265|consensus 99.4 1E-12 2.2E-17 103.4 9.2 99 1-107 53-158 (338)
51 KOG0640|consensus 99.4 7E-13 1.5E-17 105.3 8.3 121 1-129 222-359 (430)
52 KOG0282|consensus 99.4 3.3E-13 7.1E-18 111.3 6.7 99 1-107 264-367 (503)
53 KOG0282|consensus 99.4 2.2E-13 4.8E-18 112.3 5.3 99 1-107 220-325 (503)
54 KOG0647|consensus 99.4 2E-12 4.3E-17 102.0 9.8 99 1-107 33-140 (347)
55 KOG0316|consensus 99.4 1.6E-12 3.6E-17 99.9 8.5 99 1-107 23-126 (307)
56 KOG0284|consensus 99.4 2.6E-13 5.7E-18 110.2 3.6 99 1-107 102-205 (464)
57 KOG0295|consensus 99.4 2.7E-12 5.8E-17 103.2 8.6 98 2-107 242-359 (406)
58 KOG0772|consensus 99.4 7.2E-13 1.6E-17 110.4 5.4 93 2-102 324-429 (641)
59 KOG1063|consensus 99.4 1.4E-12 3E-17 111.4 7.1 101 1-107 531-643 (764)
60 KOG0319|consensus 99.3 8.1E-12 1.8E-16 107.3 10.8 99 1-107 469-572 (775)
61 KOG0275|consensus 99.3 2.8E-13 6E-18 108.2 1.4 111 1-119 269-388 (508)
62 KOG1274|consensus 99.3 6.1E-12 1.3E-16 110.0 9.1 98 1-106 144-256 (933)
63 KOG2110|consensus 99.3 1.9E-11 4.1E-16 98.4 10.7 99 4-107 138-243 (391)
64 KOG0306|consensus 99.3 1.2E-11 2.6E-16 106.7 9.3 99 1-107 514-617 (888)
65 KOG0302|consensus 99.3 2.1E-11 4.5E-16 98.6 10.1 98 1-106 263-372 (440)
66 KOG0288|consensus 99.3 2.1E-11 4.6E-16 99.3 9.5 98 1-106 347-455 (459)
67 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 4.9E-11 1.1E-15 91.5 11.1 101 1-107 162-274 (300)
68 KOG0289|consensus 99.3 2.6E-11 5.6E-16 99.4 9.8 105 2-114 310-428 (506)
69 KOG2139|consensus 99.3 1.7E-11 3.7E-16 98.9 8.5 122 1-135 201-328 (445)
70 KOG0276|consensus 99.3 8.2E-12 1.8E-16 106.1 6.5 99 1-107 146-252 (794)
71 KOG0296|consensus 99.3 5.9E-11 1.3E-15 95.5 10.9 98 1-106 70-172 (399)
72 KOG0278|consensus 99.3 3E-11 6.6E-16 93.7 8.8 96 3-107 192-292 (334)
73 KOG0285|consensus 99.3 2E-11 4.4E-16 98.3 7.9 99 1-107 157-260 (460)
74 KOG0292|consensus 99.3 9.3E-12 2E-16 109.0 6.3 99 1-107 15-118 (1202)
75 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 1.8E-10 3.9E-15 88.3 12.6 98 1-104 36-136 (300)
76 KOG0315|consensus 99.2 2.3E-11 4.9E-16 94.2 7.3 98 1-107 46-149 (311)
77 KOG0310|consensus 99.2 6.3E-11 1.4E-15 97.9 10.3 97 2-107 160-263 (487)
78 KOG0305|consensus 99.2 4.1E-11 8.8E-16 100.6 9.3 94 1-100 307-405 (484)
79 KOG0265|consensus 99.2 4.6E-11 1E-15 94.2 8.5 98 1-106 222-332 (338)
80 KOG0305|consensus 99.2 9.3E-11 2E-15 98.5 11.0 103 1-107 349-456 (484)
81 KOG1009|consensus 99.2 2E-11 4.3E-16 99.2 6.6 96 1-104 71-187 (434)
82 KOG0289|consensus 99.2 7E-11 1.5E-15 96.9 9.6 99 1-107 353-457 (506)
83 KOG0292|consensus 99.2 7.2E-11 1.6E-15 103.6 9.9 98 2-107 100-231 (1202)
84 KOG1446|consensus 99.2 1.1E-10 2.4E-15 92.2 9.8 94 1-102 193-295 (311)
85 KOG1445|consensus 99.2 1.4E-11 3E-16 105.2 4.2 98 2-107 634-745 (1012)
86 KOG1274|consensus 99.2 1.1E-10 2.5E-15 102.2 9.8 88 1-97 194-285 (933)
87 KOG0641|consensus 99.2 2.1E-10 4.5E-15 88.2 9.8 97 3-107 190-298 (350)
88 KOG0640|consensus 99.2 7.4E-11 1.6E-15 93.8 6.6 103 2-112 119-247 (430)
89 KOG0296|consensus 99.1 2.4E-10 5.3E-15 92.0 9.3 106 1-114 112-223 (399)
90 PRK01742 tolB translocation pr 99.1 4.7E-10 1E-14 93.1 11.3 95 1-101 209-310 (429)
91 KOG1539|consensus 99.1 1.7E-10 3.7E-15 100.4 8.6 65 1-72 582-647 (910)
92 KOG1539|consensus 99.1 9E-11 2E-15 102.1 6.7 88 9-104 548-639 (910)
93 KOG1538|consensus 99.1 1.7E-10 3.7E-15 99.1 7.9 92 1-101 18-112 (1081)
94 KOG0771|consensus 99.1 1.6E-10 3.4E-15 94.0 7.2 63 1-72 150-214 (398)
95 KOG0267|consensus 99.1 3.6E-11 7.8E-16 103.4 3.2 99 1-107 76-179 (825)
96 KOG2394|consensus 99.1 2.8E-10 6.1E-15 95.5 7.8 100 1-107 225-357 (636)
97 KOG0267|consensus 99.1 6.1E-11 1.3E-15 102.0 3.8 103 1-111 118-226 (825)
98 KOG0268|consensus 99.1 1.2E-10 2.6E-15 93.9 5.2 99 1-107 235-340 (433)
99 KOG0303|consensus 99.1 4.7E-10 1E-14 91.3 8.4 99 1-107 87-198 (472)
100 KOG0308|consensus 99.1 5.5E-10 1.2E-14 95.3 8.9 104 2-113 178-287 (735)
101 KOG0269|consensus 99.1 3.2E-10 6.9E-15 98.1 7.0 132 1-140 182-328 (839)
102 KOG0285|consensus 99.1 6.6E-10 1.4E-14 89.7 8.1 99 1-107 199-302 (460)
103 KOG0306|consensus 99.1 4.8E-10 1E-14 97.0 7.6 99 1-107 556-659 (888)
104 PRK03629 tolB translocation pr 99.0 2.3E-09 4.9E-14 89.1 11.3 99 1-103 204-307 (429)
105 KOG2096|consensus 99.0 7.8E-10 1.7E-14 88.3 8.0 96 3-107 195-303 (420)
106 KOG0643|consensus 99.0 7.5E-10 1.6E-14 86.5 7.6 110 2-119 154-269 (327)
107 KOG1007|consensus 99.0 6.5E-10 1.4E-14 87.7 7.2 97 2-107 177-284 (370)
108 KOG0269|consensus 99.0 5.4E-10 1.2E-14 96.7 7.1 98 2-107 140-245 (839)
109 KOG0643|consensus 99.0 4.1E-09 9E-14 82.4 11.2 96 1-104 16-115 (327)
110 KOG1034|consensus 99.0 1.3E-09 2.8E-14 87.1 8.3 92 8-107 106-206 (385)
111 PRK05137 tolB translocation pr 99.0 3.4E-09 7.4E-14 87.9 11.2 99 1-102 207-309 (435)
112 KOG0313|consensus 99.0 1.2E-09 2.5E-14 88.5 8.1 98 1-107 306-413 (423)
113 KOG0294|consensus 99.0 1.4E-09 3.1E-14 86.4 8.1 96 4-107 50-152 (362)
114 KOG2096|consensus 99.0 1.6E-09 3.5E-14 86.5 8.2 94 1-103 284-394 (420)
115 KOG0316|consensus 99.0 2.7E-09 5.9E-14 82.3 9.1 104 2-107 66-208 (307)
116 PRK01742 tolB translocation pr 99.0 2E-09 4.4E-14 89.3 8.9 103 1-110 253-360 (429)
117 KOG0639|consensus 99.0 6.2E-10 1.3E-14 93.1 5.2 97 1-105 515-615 (705)
118 PRK02889 tolB translocation pr 99.0 6.5E-09 1.4E-13 86.3 11.3 97 1-102 201-303 (427)
119 KOG0288|consensus 99.0 1.1E-09 2.5E-14 89.3 6.4 63 1-71 393-459 (459)
120 KOG0641|consensus 99.0 5.6E-09 1.2E-13 80.4 9.6 97 2-106 238-343 (350)
121 KOG0264|consensus 99.0 2.6E-09 5.7E-14 87.6 8.1 100 1-107 278-399 (422)
122 KOG2106|consensus 98.9 1.5E-08 3.1E-13 84.9 11.8 96 2-106 414-515 (626)
123 KOG0299|consensus 98.9 3.1E-09 6.6E-14 87.7 7.5 99 1-107 148-269 (479)
124 KOG4497|consensus 98.9 1.4E-08 3E-13 81.6 10.8 114 1-115 97-250 (447)
125 PRK04922 tolB translocation pr 98.9 1.1E-08 2.4E-13 85.0 10.8 99 1-102 209-311 (433)
126 KOG1063|consensus 98.9 3.4E-09 7.4E-14 91.0 7.7 98 1-106 578-693 (764)
127 KOG1524|consensus 98.9 6E-09 1.3E-13 87.8 9.0 96 2-105 111-279 (737)
128 KOG0646|consensus 98.9 4.3E-09 9.4E-14 86.9 8.0 98 2-107 88-201 (476)
129 KOG0310|consensus 98.9 9.7E-09 2.1E-13 85.1 10.1 96 2-106 203-303 (487)
130 KOG0281|consensus 98.9 9.2E-10 2E-14 88.8 3.7 90 6-107 329-423 (499)
131 KOG0277|consensus 98.9 1.3E-08 2.7E-13 79.3 9.8 102 3-112 112-225 (311)
132 KOG0313|consensus 98.9 3.5E-09 7.6E-14 85.8 6.9 98 1-107 266-371 (423)
133 PRK03629 tolB translocation pr 98.9 1.6E-08 3.5E-13 84.1 11.0 96 1-102 248-350 (429)
134 KOG0276|consensus 98.9 1.5E-08 3.2E-13 86.7 10.3 97 3-107 63-166 (794)
135 KOG0771|consensus 98.9 1.2E-08 2.5E-13 83.3 9.4 98 1-107 192-349 (398)
136 KOG0308|consensus 98.9 6E-09 1.3E-13 89.1 8.0 105 4-116 127-254 (735)
137 KOG0264|consensus 98.9 1.1E-08 2.4E-13 83.9 8.7 99 1-107 233-342 (422)
138 KOG0294|consensus 98.9 2.2E-08 4.7E-13 79.7 9.8 95 2-104 90-190 (362)
139 KOG0302|consensus 98.9 1.5E-08 3.3E-13 82.2 8.7 96 1-104 308-431 (440)
140 KOG1446|consensus 98.8 4.6E-08 1E-12 77.5 11.2 101 1-107 20-125 (311)
141 PRK05137 tolB translocation pr 98.8 3.5E-08 7.6E-13 81.9 11.0 98 1-102 251-353 (435)
142 KOG2055|consensus 98.8 1.4E-08 3.1E-13 84.0 8.4 94 1-102 350-455 (514)
143 TIGR02800 propeller_TolB tol-p 98.8 4.5E-08 9.7E-13 79.9 11.2 98 2-102 196-297 (417)
144 PRK04792 tolB translocation pr 98.8 4.9E-08 1.1E-12 81.7 11.3 95 2-102 224-325 (448)
145 KOG1445|consensus 98.8 7.6E-09 1.7E-13 88.7 6.5 104 2-113 684-795 (1012)
146 KOG4497|consensus 98.8 6.5E-08 1.4E-12 77.8 11.3 81 17-102 69-153 (447)
147 KOG0278|consensus 98.8 2.2E-08 4.7E-13 78.0 8.3 95 3-106 151-248 (334)
148 PRK11028 6-phosphogluconolacto 98.8 5.7E-08 1.2E-12 77.4 10.8 100 1-106 85-199 (330)
149 KOG0639|consensus 98.8 9.6E-09 2.1E-13 86.1 6.5 98 2-107 472-576 (705)
150 PRK00178 tolB translocation pr 98.8 5.6E-08 1.2E-12 80.3 11.1 98 2-102 205-306 (430)
151 KOG2055|consensus 98.8 2.1E-08 4.7E-13 82.9 8.4 96 3-106 311-411 (514)
152 KOG1009|consensus 98.8 9.9E-09 2.2E-13 83.7 6.3 98 2-107 20-148 (434)
153 KOG1963|consensus 98.8 2.9E-08 6.4E-13 86.8 9.5 99 1-107 211-317 (792)
154 PRK11028 6-phosphogluconolacto 98.8 5.8E-08 1.3E-12 77.3 10.5 100 1-106 180-298 (330)
155 KOG0277|consensus 98.8 2.4E-08 5.2E-13 77.7 7.8 100 1-107 66-173 (311)
156 KOG1332|consensus 98.8 2.6E-08 5.6E-13 77.2 7.8 93 7-107 23-129 (299)
157 KOG1408|consensus 98.8 1.7E-08 3.6E-13 87.6 7.3 99 1-103 84-186 (1080)
158 KOG0270|consensus 98.8 7.9E-09 1.7E-13 85.0 5.1 98 6-111 191-317 (463)
159 PRK02889 tolB translocation pr 98.8 5.1E-08 1.1E-12 81.0 9.8 99 2-104 290-392 (427)
160 KOG0300|consensus 98.8 2.2E-08 4.8E-13 80.2 7.1 105 3-116 280-394 (481)
161 KOG2048|consensus 98.8 6.4E-08 1.4E-12 83.0 10.3 98 1-107 75-179 (691)
162 PRK04922 tolB translocation pr 98.8 9.6E-08 2.1E-12 79.3 11.2 95 1-101 253-354 (433)
163 KOG0274|consensus 98.8 7.3E-08 1.6E-12 82.5 10.7 92 6-107 260-354 (537)
164 KOG0268|consensus 98.8 6.5E-09 1.4E-13 84.0 4.0 100 1-107 193-297 (433)
165 KOG2110|consensus 98.8 5E-08 1.1E-12 78.9 9.0 65 1-73 179-248 (391)
166 COG2319 FOG: WD40 repeat [Gene 98.8 1.5E-07 3.3E-12 72.2 11.2 99 1-107 161-266 (466)
167 KOG0303|consensus 98.7 4.7E-08 1E-12 79.9 8.5 92 1-101 137-234 (472)
168 KOG0274|consensus 98.7 9.2E-08 2E-12 81.9 10.7 92 5-107 299-395 (537)
169 KOG1034|consensus 98.7 4.5E-08 9.7E-13 78.4 8.1 66 1-74 141-212 (385)
170 PF02239 Cytochrom_D1: Cytochr 98.7 1.6E-07 3.5E-12 77.0 11.7 94 2-102 43-148 (369)
171 PRK01029 tolB translocation pr 98.7 1.1E-07 2.3E-12 79.3 10.6 94 2-99 287-387 (428)
172 KOG1332|consensus 98.7 4.1E-08 8.8E-13 76.1 7.1 98 2-107 63-188 (299)
173 KOG0647|consensus 98.7 6.4E-08 1.4E-12 76.7 8.3 104 1-113 78-186 (347)
174 KOG1036|consensus 98.7 9.7E-08 2.1E-12 75.7 9.3 98 1-107 19-119 (323)
175 KOG0301|consensus 98.7 4.8E-08 1E-12 84.0 8.0 94 4-107 149-244 (745)
176 KOG2111|consensus 98.7 9.9E-08 2.1E-12 76.0 9.1 93 9-107 150-251 (346)
177 KOG0281|consensus 98.7 1.3E-08 2.8E-13 82.2 4.2 91 5-107 205-300 (499)
178 KOG2111|consensus 98.7 1.1E-07 2.3E-12 75.8 8.9 65 1-73 187-256 (346)
179 KOG2445|consensus 98.7 2.8E-07 6E-12 73.4 10.9 111 1-119 19-158 (361)
180 KOG2919|consensus 98.7 1.9E-07 4.2E-12 74.8 9.8 92 2-101 56-177 (406)
181 KOG0974|consensus 98.7 1.3E-07 2.7E-12 84.2 9.5 97 1-107 181-283 (967)
182 KOG1408|consensus 98.7 1.3E-07 2.9E-12 82.1 9.3 97 2-106 603-707 (1080)
183 KOG0299|consensus 98.7 4.3E-08 9.3E-13 81.0 5.9 99 1-107 208-311 (479)
184 KOG2139|consensus 98.6 2E-07 4.3E-12 75.7 8.9 99 1-107 146-263 (445)
185 KOG0646|consensus 98.6 3.9E-07 8.5E-12 75.5 10.2 99 1-107 129-242 (476)
186 KOG2314|consensus 98.6 1.1E-07 2.4E-12 80.5 7.1 101 1-104 216-327 (698)
187 PRK04792 tolB translocation pr 98.6 4.6E-07 1E-11 75.9 10.7 97 2-102 268-369 (448)
188 KOG1273|consensus 98.6 5.9E-08 1.3E-12 77.6 5.0 68 34-107 20-90 (405)
189 KOG1523|consensus 98.6 1.9E-07 4.1E-12 74.6 7.6 110 1-119 61-182 (361)
190 KOG0301|consensus 98.6 7.5E-07 1.6E-11 76.9 11.7 107 3-121 187-305 (745)
191 KOG1524|consensus 98.6 1.2E-07 2.7E-12 80.1 6.8 77 1-80 192-274 (737)
192 KOG0650|consensus 98.6 5.6E-07 1.2E-11 76.8 10.7 103 1-105 406-544 (733)
193 KOG1310|consensus 98.6 1.3E-07 2.7E-12 80.2 6.6 104 1-112 56-179 (758)
194 KOG2315|consensus 98.6 5.6E-07 1.2E-11 76.0 10.4 99 1-104 276-376 (566)
195 PF00400 WD40: WD domain, G-be 98.6 2.9E-07 6.2E-12 50.9 6.0 36 30-71 2-39 (39)
196 KOG0270|consensus 98.6 2.8E-07 6E-12 76.0 8.2 92 8-107 257-355 (463)
197 KOG0322|consensus 98.6 2.8E-07 6.1E-12 72.1 7.7 62 39-106 253-317 (323)
198 TIGR02800 propeller_TolB tol-p 98.6 8E-07 1.7E-11 72.6 10.8 96 2-104 284-386 (417)
199 KOG4378|consensus 98.6 2.4E-07 5.2E-12 77.7 7.5 99 1-106 170-274 (673)
200 COG2319 FOG: WD40 repeat [Gene 98.5 1.4E-06 3.1E-11 66.8 11.3 98 4-107 119-224 (466)
201 KOG2048|consensus 98.5 8.8E-07 1.9E-11 76.2 10.8 95 1-104 31-132 (691)
202 KOG1538|consensus 98.5 4.3E-08 9.4E-13 84.6 2.8 98 1-107 59-157 (1081)
203 KOG1007|consensus 98.5 2E-07 4.3E-12 73.8 6.2 97 1-107 129-240 (370)
204 PRK04043 tolB translocation pr 98.5 1.1E-06 2.3E-11 73.3 10.4 98 2-102 239-338 (419)
205 KOG1963|consensus 98.5 7.5E-07 1.6E-11 78.1 9.7 98 1-107 166-276 (792)
206 KOG4283|consensus 98.5 6.9E-07 1.5E-11 71.1 8.5 97 3-107 109-214 (397)
207 KOG2106|consensus 98.5 9.1E-07 2E-11 74.3 9.5 95 2-106 375-471 (626)
208 PRK00178 tolB translocation pr 98.5 1.8E-06 3.8E-11 71.4 11.3 98 1-102 248-350 (430)
209 KOG4283|consensus 98.5 8.8E-07 1.9E-11 70.5 8.8 98 2-107 150-271 (397)
210 KOG0642|consensus 98.5 5.9E-07 1.3E-11 75.9 7.9 98 2-107 301-421 (577)
211 PRK04043 tolB translocation pr 98.5 3.2E-06 7E-11 70.4 12.3 98 2-102 194-296 (419)
212 KOG0322|consensus 98.5 2.3E-07 5.1E-12 72.6 5.0 64 1-72 257-322 (323)
213 PRK01029 tolB translocation pr 98.5 1.9E-06 4E-11 71.9 10.8 91 2-95 333-427 (428)
214 KOG0307|consensus 98.4 4.1E-07 8.9E-12 81.6 6.2 101 1-107 212-322 (1049)
215 KOG4378|consensus 98.4 3E-06 6.5E-11 71.3 10.5 91 1-100 214-310 (673)
216 KOG2919|consensus 98.4 2.7E-06 5.8E-11 68.4 8.8 93 1-102 164-270 (406)
217 KOG1272|consensus 98.3 9.2E-07 2E-11 73.6 6.0 91 4-102 260-354 (545)
218 KOG1523|consensus 98.3 3.8E-06 8.3E-11 67.2 9.1 97 2-106 17-124 (361)
219 PF00930 DPPIV_N: Dipeptidyl p 98.3 2.6E-06 5.6E-11 69.1 8.0 94 4-104 1-122 (353)
220 PF10282 Lactonase: Lactonase, 98.3 1.7E-05 3.7E-10 64.1 12.6 97 1-103 197-312 (345)
221 KOG4227|consensus 98.3 2.9E-06 6.3E-11 69.8 7.8 98 1-106 62-173 (609)
222 PF02239 Cytochrom_D1: Cytochr 98.3 9.3E-06 2E-10 66.7 10.9 88 7-101 5-96 (369)
223 KOG4328|consensus 98.3 2E-06 4.4E-11 71.3 6.8 97 3-107 287-394 (498)
224 KOG0307|consensus 98.3 7.1E-07 1.5E-11 80.2 4.3 97 1-104 122-229 (1049)
225 KOG4328|consensus 98.2 4.4E-06 9.4E-11 69.4 7.4 96 1-104 328-442 (498)
226 PF11768 DUF3312: Protein of u 98.2 8.1E-06 1.8E-10 69.5 9.2 89 2-98 266-373 (545)
227 KOG2445|consensus 98.2 1.2E-05 2.5E-10 64.3 9.2 99 2-107 176-313 (361)
228 COG5354 Uncharacterized protei 98.2 3.5E-06 7.5E-11 70.8 6.2 95 1-98 38-147 (561)
229 KOG1188|consensus 98.2 8.9E-06 1.9E-10 65.6 8.3 96 7-106 84-190 (376)
230 KOG0650|consensus 98.2 7.8E-06 1.7E-10 70.0 7.9 60 31-96 394-455 (733)
231 KOG3914|consensus 98.1 7.1E-06 1.5E-10 67.0 6.4 72 1-81 157-232 (390)
232 KOG0974|consensus 98.1 1.2E-05 2.5E-10 72.0 8.0 95 3-107 141-241 (967)
233 COG4946 Uncharacterized protei 98.1 2.5E-05 5.5E-10 65.6 9.4 92 2-97 408-503 (668)
234 PF10282 Lactonase: Lactonase, 98.1 0.00011 2.4E-09 59.4 12.8 94 1-100 92-209 (345)
235 KOG0321|consensus 98.1 1.3E-05 2.9E-10 68.9 7.2 99 1-107 106-243 (720)
236 KOG0290|consensus 98.1 3.2E-05 7E-10 61.5 8.8 89 7-103 163-264 (364)
237 COG0823 TolB Periplasmic compo 98.0 1.3E-05 2.7E-10 67.1 6.8 96 2-101 244-344 (425)
238 PF04762 IKI3: IKI3 family; I 98.0 2.2E-05 4.8E-10 71.3 8.7 62 40-101 212-275 (928)
239 PLN02919 haloacid dehalogenase 98.0 6.4E-05 1.4E-09 69.2 11.7 100 1-107 745-883 (1057)
240 KOG3881|consensus 98.0 4.3E-05 9.3E-10 62.5 9.0 98 2-107 209-315 (412)
241 TIGR02658 TTQ_MADH_Hv methylam 98.0 0.00014 3E-09 59.5 11.3 75 3-81 53-145 (352)
242 PF00400 WD40: WD domain, G-be 98.0 1.3E-05 2.8E-10 44.1 3.7 23 1-25 17-39 (39)
243 KOG0300|consensus 97.9 6.1E-05 1.3E-09 60.8 8.4 95 4-107 323-423 (481)
244 KOG0290|consensus 97.9 4.5E-05 9.7E-10 60.7 7.2 97 1-107 102-222 (364)
245 KOG0321|consensus 97.9 8.4E-05 1.8E-09 64.1 8.5 97 3-106 225-341 (720)
246 COG4946 Uncharacterized protei 97.8 0.00023 4.9E-09 60.1 10.7 97 3-107 367-468 (668)
247 KOG0649|consensus 97.8 0.00014 3E-09 56.9 8.8 102 2-107 17-181 (325)
248 KOG4547|consensus 97.8 0.00023 4.9E-09 60.6 10.8 89 3-101 110-208 (541)
249 COG2706 3-carboxymuconate cycl 97.8 0.00039 8.5E-09 56.3 11.5 98 1-104 196-312 (346)
250 KOG1036|consensus 97.8 0.00013 2.9E-09 58.1 8.5 93 1-101 183-293 (323)
251 TIGR02658 TTQ_MADH_Hv methylam 97.8 0.00042 9.2E-09 56.7 11.6 75 1-80 253-338 (352)
252 KOG1272|consensus 97.8 6.3E-05 1.4E-09 62.9 6.8 123 1-133 299-446 (545)
253 KOG1517|consensus 97.8 5.4E-05 1.2E-09 68.6 6.7 96 2-106 1263-1375(1387)
254 COG2706 3-carboxymuconate cycl 97.8 0.00054 1.2E-08 55.6 11.7 93 2-100 151-261 (346)
255 KOG2321|consensus 97.8 0.00016 3.6E-09 61.9 8.9 91 2-100 182-291 (703)
256 PF08450 SGL: SMP-30/Gluconola 97.8 0.0012 2.6E-08 50.5 12.8 91 1-98 139-241 (246)
257 KOG0642|consensus 97.8 0.0001 2.2E-09 62.7 7.2 99 1-107 402-556 (577)
258 KOG0649|consensus 97.7 0.00048 1E-08 53.9 10.3 93 4-104 123-228 (325)
259 PF07433 DUF1513: Protein of u 97.7 0.00071 1.5E-08 54.3 11.6 99 2-100 57-180 (305)
260 COG0823 TolB Periplasmic compo 97.7 0.00015 3.1E-09 60.8 7.5 97 2-103 199-302 (425)
261 PF15492 Nbas_N: Neuroblastoma 97.7 0.001 2.2E-08 52.6 11.6 25 1-27 49-73 (282)
262 PF04762 IKI3: IKI3 family; I 97.7 0.00028 6.1E-09 64.2 9.7 110 1-115 215-340 (928)
263 KOG1310|consensus 97.7 5.7E-05 1.2E-09 64.5 4.9 65 37-107 50-120 (758)
264 KOG4640|consensus 97.7 0.00022 4.9E-09 61.5 8.0 84 1-93 26-116 (665)
265 KOG0644|consensus 97.6 1.9E-05 4.1E-10 69.9 1.5 94 2-107 197-295 (1113)
266 PF04053 Coatomer_WDAD: Coatom 97.6 0.00071 1.5E-08 57.0 10.8 105 1-111 38-175 (443)
267 KOG3914|consensus 97.6 0.00018 3.8E-09 59.0 6.5 83 18-107 131-218 (390)
268 KOG0280|consensus 97.6 0.00044 9.5E-09 55.1 8.4 80 8-95 179-266 (339)
269 PRK13616 lipoprotein LpqB; Pro 97.6 0.00051 1.1E-08 59.8 9.7 98 2-100 356-465 (591)
270 KOG2321|consensus 97.5 0.00025 5.5E-09 60.8 6.8 98 1-107 234-338 (703)
271 PF02897 Peptidase_S9_N: Proly 97.5 0.0018 3.8E-08 53.2 11.3 99 2-100 130-244 (414)
272 PRK02888 nitrous-oxide reducta 97.5 0.00097 2.1E-08 58.1 9.9 93 1-100 326-449 (635)
273 KOG1587|consensus 97.5 0.00025 5.5E-09 61.1 6.3 99 2-107 405-511 (555)
274 PF15492 Nbas_N: Neuroblastoma 97.5 0.0013 2.8E-08 52.1 9.3 71 1-80 3-80 (282)
275 PF08450 SGL: SMP-30/Gluconola 97.4 0.0031 6.7E-08 48.2 11.0 101 2-106 46-158 (246)
276 KOG3881|consensus 97.4 0.0011 2.4E-08 54.4 8.7 88 2-97 254-346 (412)
277 KOG4714|consensus 97.4 0.00042 9.2E-09 54.5 5.9 67 4-77 188-258 (319)
278 PF11768 DUF3312: Protein of u 97.4 0.00043 9.3E-09 59.2 6.3 64 38-107 260-324 (545)
279 KOG1517|consensus 97.4 0.0008 1.7E-08 61.3 8.1 98 2-107 1172-1282(1387)
280 PF04053 Coatomer_WDAD: Coatom 97.4 0.0012 2.5E-08 55.7 8.7 57 7-73 117-173 (443)
281 smart00320 WD40 WD40 repeats. 97.3 0.0012 2.7E-08 33.5 5.6 29 37-71 12-40 (40)
282 KOG4547|consensus 97.3 0.003 6.6E-08 53.9 10.2 89 6-102 69-164 (541)
283 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.0014 3.1E-08 53.1 6.8 53 2-57 49-120 (353)
284 KOG3621|consensus 97.1 0.0018 4E-08 56.6 7.6 98 2-107 40-149 (726)
285 PLN02919 haloacid dehalogenase 97.1 0.0034 7.4E-08 58.0 9.5 66 1-74 809-889 (1057)
286 KOG1920|consensus 97.1 0.0031 6.7E-08 58.0 8.5 58 41-100 199-259 (1265)
287 KOG1587|consensus 97.0 0.0042 9.1E-08 53.7 8.5 110 2-118 249-385 (555)
288 KOG3617|consensus 97.0 0.00094 2E-08 59.9 4.4 97 1-104 21-123 (1416)
289 KOG1188|consensus 96.9 0.0065 1.4E-07 49.3 8.5 86 9-102 42-137 (376)
290 KOG4532|consensus 96.9 0.013 2.8E-07 46.6 9.9 87 1-95 164-263 (344)
291 PRK13616 lipoprotein LpqB; Pro 96.9 0.0088 1.9E-07 52.2 9.6 89 2-98 403-512 (591)
292 KOG1240|consensus 96.9 0.0054 1.2E-07 56.7 8.3 61 4-72 1058-1127(1431)
293 KOG2066|consensus 96.8 0.0095 2.1E-07 52.9 9.3 88 6-104 82-180 (846)
294 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0044 9.6E-08 36.2 4.9 34 38-77 12-45 (47)
295 PRK10115 protease 2; Provision 96.7 0.028 6.1E-07 49.8 11.7 96 2-99 133-239 (686)
296 KOG1064|consensus 96.7 0.0011 2.4E-08 63.2 2.6 68 8-81 2303-2375(2439)
297 KOG2066|consensus 96.6 0.011 2.3E-07 52.7 7.9 84 7-104 49-139 (846)
298 KOG1354|consensus 96.6 0.01 2.2E-07 48.6 7.1 63 1-72 278-358 (433)
299 smart00320 WD40 WD40 repeats. 96.6 0.0028 6.1E-08 32.0 2.7 23 1-25 18-40 (40)
300 KOG1920|consensus 96.5 0.0081 1.8E-07 55.4 6.8 113 1-117 201-331 (1265)
301 KOG4714|consensus 96.5 0.0022 4.8E-08 50.5 2.7 96 6-106 143-248 (319)
302 KOG4227|consensus 96.5 0.022 4.8E-07 47.4 8.6 90 2-99 112-211 (609)
303 KOG1334|consensus 96.4 0.0017 3.7E-08 54.8 1.8 64 3-74 402-467 (559)
304 KOG0644|consensus 96.4 0.0012 2.7E-08 58.8 1.1 64 38-107 191-257 (1113)
305 KOG1064|consensus 96.4 0.0075 1.6E-07 57.9 6.0 99 1-107 2257-2361(2439)
306 KOG1354|consensus 96.4 0.02 4.2E-07 46.9 7.6 94 1-102 31-184 (433)
307 KOG0280|consensus 96.3 0.06 1.3E-06 43.2 9.9 99 1-107 127-236 (339)
308 COG3386 Gluconolactonase [Carb 96.3 0.057 1.2E-06 43.5 10.0 94 1-100 168-273 (307)
309 PF10647 Gmad1: Lipoprotein Lp 96.3 0.05 1.1E-06 42.4 9.4 94 1-101 29-130 (253)
310 KOG1645|consensus 96.3 0.019 4.2E-07 47.7 7.2 66 1-73 199-266 (463)
311 PRK02888 nitrous-oxide reducta 96.2 0.029 6.3E-07 49.2 8.4 101 3-112 284-405 (635)
312 COG3490 Uncharacterized protei 96.2 0.059 1.3E-06 43.3 9.4 98 2-99 120-242 (366)
313 PF07433 DUF1513: Protein of u 96.2 0.17 3.6E-06 40.9 12.1 62 38-105 217-279 (305)
314 KOG2041|consensus 96.1 0.022 4.7E-07 50.7 7.1 98 1-106 20-139 (1189)
315 KOG2041|consensus 96.1 0.0073 1.6E-07 53.5 4.1 97 1-105 77-179 (1189)
316 PF07569 Hira: TUP1-like enhan 96.0 0.073 1.6E-06 40.8 8.9 62 3-73 18-95 (219)
317 KOG2695|consensus 96.0 0.022 4.9E-07 46.6 6.2 79 6-92 310-402 (425)
318 PF12894 Apc4_WD40: Anaphase-p 95.8 0.016 3.4E-07 33.9 3.6 25 1-27 17-41 (47)
319 COG3391 Uncharacterized conser 95.8 0.21 4.6E-06 41.1 11.4 95 1-100 121-224 (381)
320 COG5170 CDC55 Serine/threonine 95.8 0.029 6.2E-07 45.6 5.9 92 3-102 229-357 (460)
321 KOG3617|consensus 95.6 0.024 5.1E-07 51.3 5.2 87 1-95 65-162 (1416)
322 KOG1240|consensus 95.5 0.11 2.4E-06 48.5 9.4 86 9-102 1165-1261(1431)
323 PF07676 PD40: WD40-like Beta 95.5 0.04 8.8E-07 30.1 4.3 20 38-57 9-28 (39)
324 TIGR02604 Piru_Ver_Nterm putat 95.4 0.17 3.7E-06 41.3 9.5 99 1-103 77-204 (367)
325 PF12234 Rav1p_C: RAVE protein 95.4 0.25 5.3E-06 43.6 10.9 78 18-101 50-147 (631)
326 PF14870 PSII_BNR: Photosynthe 95.4 0.34 7.3E-06 39.0 10.8 95 3-107 152-257 (302)
327 KOG4532|consensus 95.3 0.13 2.7E-06 41.1 7.8 83 18-106 137-227 (344)
328 PF07676 PD40: WD40-like Beta 95.3 0.034 7.4E-07 30.4 3.5 22 2-24 15-38 (39)
329 KOG4640|consensus 95.2 0.038 8.2E-07 48.1 5.3 64 38-107 21-87 (665)
330 TIGR02276 beta_rpt_yvtn 40-res 95.1 0.16 3.5E-06 27.7 6.0 40 5-45 1-41 (42)
331 KOG1334|consensus 95.0 0.044 9.6E-07 46.5 5.0 99 1-107 148-258 (559)
332 COG5170 CDC55 Serine/threonine 95.0 0.079 1.7E-06 43.1 6.0 54 1-57 286-357 (460)
333 PF07995 GSDH: Glucose / Sorbo 94.9 0.63 1.4E-05 37.6 11.2 102 1-105 7-136 (331)
334 PF14583 Pectate_lyase22: Olig 94.8 0.35 7.6E-06 40.2 9.7 101 2-102 244-370 (386)
335 PF14783 BBS2_Mid: Ciliary BBS 94.4 1.1 2.3E-05 31.0 11.8 86 8-104 16-106 (111)
336 KOG2079|consensus 94.4 0.12 2.6E-06 47.7 6.4 89 8-104 100-197 (1206)
337 PF10647 Gmad1: Lipoprotein Lp 94.3 0.87 1.9E-05 35.4 10.5 95 2-101 72-184 (253)
338 PF08553 VID27: VID27 cytoplas 94.2 0.16 3.4E-06 45.9 6.8 45 9-56 590-637 (794)
339 KOG4190|consensus 94.1 0.14 3E-06 44.7 5.8 63 7-79 747-819 (1034)
340 KOG1912|consensus 94.0 0.17 3.6E-06 45.6 6.4 83 1-93 21-120 (1062)
341 PLN00033 photosystem II stabil 94.0 1.3 2.8E-05 37.0 11.4 91 1-102 286-390 (398)
342 PF06977 SdiA-regulated: SdiA- 93.9 0.33 7.1E-06 38.0 7.2 64 38-106 22-88 (248)
343 KOG1275|consensus 93.8 0.36 7.8E-06 44.1 8.1 66 5-72 185-253 (1118)
344 COG3391 Uncharacterized conser 93.7 1.3 2.9E-05 36.3 11.0 95 1-100 79-177 (381)
345 PLN00033 photosystem II stabil 93.5 1.5 3.4E-05 36.6 11.1 89 3-102 246-347 (398)
346 COG3204 Uncharacterized protei 93.3 1.2 2.7E-05 35.9 9.6 96 1-104 91-202 (316)
347 PF08553 VID27: VID27 cytoplas 93.3 0.74 1.6E-05 41.7 9.3 77 18-101 551-637 (794)
348 KOG1409|consensus 93.3 0.15 3.3E-06 41.8 4.5 64 38-107 198-265 (404)
349 PF06977 SdiA-regulated: SdiA- 93.2 3.1 6.7E-05 32.6 11.7 94 1-102 27-137 (248)
350 KOG2695|consensus 92.8 0.36 7.8E-06 39.7 6.0 95 3-105 260-369 (425)
351 PF01731 Arylesterase: Arylest 92.7 0.76 1.6E-05 30.2 6.5 50 18-73 35-84 (86)
352 PF10168 Nup88: Nuclear pore c 92.6 1.5 3.2E-05 39.5 10.2 63 38-107 85-174 (717)
353 PF02897 Peptidase_S9_N: Proly 92.5 0.36 7.9E-06 39.6 6.0 63 40-103 126-190 (414)
354 KOG1912|consensus 92.4 0.61 1.3E-05 42.1 7.4 80 9-95 81-168 (1062)
355 PF13360 PQQ_2: PQQ-like domai 92.3 0.36 7.8E-06 35.9 5.3 67 4-79 33-101 (238)
356 TIGR03300 assembly_YfgL outer 92.3 0.73 1.6E-05 37.2 7.4 90 6-106 278-373 (377)
357 PRK13684 Ycf48-like protein; P 92.3 2 4.4E-05 34.7 9.9 89 2-101 179-278 (334)
358 COG3386 Gluconolactonase [Carb 91.8 1.9 4.1E-05 34.8 9.2 83 20-102 86-183 (307)
359 PF15390 DUF4613: Domain of un 91.7 2.5 5.4E-05 37.2 10.1 91 1-100 62-173 (671)
360 PF12657 TFIIIC_delta: Transcr 91.6 1.6 3.5E-05 31.9 8.0 30 39-74 87-122 (173)
361 PF10168 Nup88: Nuclear pore c 91.5 0.87 1.9E-05 40.9 7.5 64 1-73 90-179 (717)
362 PRK10115 protease 2; Provision 91.4 0.89 1.9E-05 40.5 7.4 64 39-103 128-192 (686)
363 PF04841 Vps16_N: Vps16, N-ter 91.2 3.4 7.3E-05 34.5 10.3 64 2-76 35-112 (410)
364 TIGR03606 non_repeat_PQQ dehyd 90.9 6.4 0.00014 33.5 11.8 101 1-103 35-166 (454)
365 PF04841 Vps16_N: Vps16, N-ter 90.9 2.7 5.8E-05 35.1 9.4 50 1-52 222-274 (410)
366 TIGR02604 Piru_Ver_Nterm putat 90.6 3.4 7.4E-05 33.7 9.7 94 1-102 19-143 (367)
367 PF14870 PSII_BNR: Photosynthe 90.4 5.2 0.00011 32.2 10.4 90 1-101 192-294 (302)
368 PF13449 Phytase-like: Esteras 90.4 8.2 0.00018 31.0 12.2 95 1-98 90-230 (326)
369 PF14655 RAB3GAP2_N: Rab3 GTPa 90.2 2.2 4.8E-05 35.9 8.4 86 1-94 7-120 (415)
370 KOG1645|consensus 90.2 0.72 1.6E-05 38.6 5.3 76 21-102 175-255 (463)
371 TIGR03300 assembly_YfgL outer 89.9 2.2 4.7E-05 34.5 7.9 88 7-106 241-332 (377)
372 KOG1409|consensus 89.5 0.51 1.1E-05 38.8 3.9 66 1-74 203-271 (404)
373 KOG1832|consensus 89.4 0.2 4.2E-06 45.9 1.6 81 2-100 1237-1319(1516)
374 KOG3621|consensus 88.9 0.71 1.5E-05 40.9 4.6 54 2-57 83-144 (726)
375 PF14583 Pectate_lyase22: Olig 88.8 5.5 0.00012 33.3 9.5 93 2-101 42-143 (386)
376 COG3490 Uncharacterized protei 88.7 5.7 0.00012 32.2 9.2 99 1-101 73-180 (366)
377 PF06433 Me-amine-dh_H: Methyl 88.5 5.5 0.00012 32.7 9.2 69 2-77 101-171 (342)
378 PF14761 HPS3_N: Hermansky-Pud 88.4 2.7 5.9E-05 32.3 7.0 39 18-56 37-78 (215)
379 KOG4460|consensus 88.1 1.9 4.2E-05 37.6 6.6 70 1-78 109-204 (741)
380 KOG4190|consensus 88.1 0.91 2E-05 39.8 4.7 122 3-132 792-940 (1034)
381 KOG2079|consensus 87.7 2.1 4.5E-05 39.9 6.9 54 1-56 136-194 (1206)
382 PF15390 DUF4613: Domain of un 87.6 2.9 6.3E-05 36.8 7.4 67 2-75 119-188 (671)
383 TIGR02276 beta_rpt_yvtn 40-res 86.9 3 6.5E-05 22.4 5.0 29 47-80 1-30 (42)
384 KOG1916|consensus 86.6 1.1 2.3E-05 41.3 4.4 23 3-27 243-265 (1283)
385 PF06433 Me-amine-dh_H: Methyl 86.4 3.5 7.6E-05 33.8 7.0 57 20-81 270-329 (342)
386 PF12234 Rav1p_C: RAVE protein 86.0 3.5 7.6E-05 36.6 7.2 60 3-72 82-155 (631)
387 KOG0309|consensus 85.8 0.82 1.8E-05 41.2 3.3 97 3-107 122-227 (1081)
388 COG3204 Uncharacterized protei 85.8 2 4.4E-05 34.6 5.2 64 37-106 85-152 (316)
389 KOG4649|consensus 85.8 6.3 0.00014 31.6 7.9 66 7-80 63-131 (354)
390 KOG2395|consensus 85.5 2.2 4.7E-05 37.1 5.6 45 9-56 443-490 (644)
391 PF13360 PQQ_2: PQQ-like domai 85.4 3.1 6.8E-05 30.8 5.9 57 18-80 2-62 (238)
392 KOG3630|consensus 85.2 2.4 5.3E-05 39.9 6.0 78 17-100 176-261 (1405)
393 KOG1832|consensus 83.7 0.81 1.8E-05 42.1 2.3 67 1-73 1107-1175(1516)
394 PF13449 Phytase-like: Esteras 83.7 20 0.00043 28.8 10.3 63 41-103 88-167 (326)
395 COG1506 DAP2 Dipeptidyl aminop 83.4 11 0.00024 33.1 9.3 103 1-105 65-190 (620)
396 PRK13684 Ycf48-like protein; P 83.3 22 0.00048 28.7 10.6 89 2-101 221-321 (334)
397 TIGR02171 Fb_sc_TIGR02171 Fibr 83.2 11 0.00024 34.8 9.2 80 19-98 329-414 (912)
398 KOG2100|consensus 83.2 6.6 0.00014 35.5 7.9 55 3-57 104-167 (755)
399 PF10313 DUF2415: Uncharacteri 83.1 2.6 5.7E-05 24.1 3.5 26 1-28 6-34 (43)
400 KOG2114|consensus 83.1 6.3 0.00014 36.0 7.5 100 2-106 30-149 (933)
401 COG1506 DAP2 Dipeptidyl aminop 82.9 7 0.00015 34.3 7.8 57 37-99 59-117 (620)
402 KOG2377|consensus 82.6 5.6 0.00012 34.3 6.7 88 1-98 72-169 (657)
403 KOG0882|consensus 81.9 5.7 0.00012 34.0 6.5 92 9-107 113-226 (558)
404 PF07569 Hira: TUP1-like enhan 81.5 7.5 0.00016 29.7 6.7 52 45-102 18-86 (219)
405 KOG4499|consensus 81.4 15 0.00033 29.1 8.3 84 1-91 163-262 (310)
406 PF11715 Nup160: Nucleoporin N 81.2 3 6.6E-05 35.7 4.9 27 6-34 229-255 (547)
407 PF03178 CPSF_A: CPSF A subuni 81.1 14 0.0003 29.3 8.3 89 7-106 98-196 (321)
408 PF11715 Nup160: Nucleoporin N 79.7 12 0.00027 32.0 8.1 34 40-79 217-255 (547)
409 PF00780 CNH: CNH domain; Int 78.3 18 0.00039 27.6 8.0 59 4-72 4-63 (275)
410 COG1770 PtrB Protease II [Amin 78.2 4.6 0.0001 35.9 5.0 55 2-56 135-192 (682)
411 PF00780 CNH: CNH domain; Int 77.6 29 0.00063 26.4 10.0 85 5-101 45-155 (275)
412 KOG0882|consensus 76.8 3.5 7.6E-05 35.2 3.8 69 2-78 151-237 (558)
413 KOG0309|consensus 75.8 5.5 0.00012 36.2 4.9 63 2-73 74-145 (1081)
414 PF03088 Str_synth: Strictosid 74.7 21 0.00046 23.4 7.3 40 18-57 36-76 (89)
415 PF07995 GSDH: Glucose / Sorbo 74.5 14 0.00031 29.7 6.7 57 39-102 3-72 (331)
416 PRK13615 lipoprotein LpqB; Pro 74.3 39 0.00084 29.7 9.6 89 2-100 340-434 (557)
417 KOG1008|consensus 74.3 0.84 1.8E-05 40.4 -0.5 89 2-99 161-260 (783)
418 KOG2395|consensus 73.8 25 0.00054 30.9 8.1 78 17-101 402-490 (644)
419 PF14655 RAB3GAP2_N: Rab3 GTPa 72.9 23 0.00051 29.8 7.8 32 1-34 313-344 (415)
420 PF05694 SBP56: 56kDa selenium 71.2 66 0.0014 27.6 10.3 96 5-101 85-199 (461)
421 PF10584 Proteasome_A_N: Prote 71.0 1.6 3.5E-05 21.6 0.3 8 2-9 7-14 (23)
422 PF05787 DUF839: Bacterial pro 70.4 14 0.00031 32.0 6.1 19 38-56 502-520 (524)
423 KOG1008|consensus 70.2 0.76 1.6E-05 40.6 -1.6 94 2-102 109-216 (783)
424 PF05694 SBP56: 56kDa selenium 68.8 25 0.00055 30.0 7.0 56 1-57 317-393 (461)
425 KOG2114|consensus 67.3 1E+02 0.0022 28.6 10.8 91 3-101 133-233 (933)
426 KOG1916|consensus 64.7 2.7 5.9E-05 38.8 0.6 26 44-75 242-269 (1283)
427 KOG2444|consensus 64.1 16 0.00034 28.5 4.6 50 17-72 122-176 (238)
428 COG5167 VID27 Protein involved 63.2 23 0.00049 31.2 5.8 47 8-56 574-622 (776)
429 COG2133 Glucose/sorbosone dehy 63.1 20 0.00042 30.2 5.3 24 32-55 233-257 (399)
430 TIGR02608 delta_60_rpt delta-6 63.0 30 0.00066 20.6 5.1 19 39-57 2-20 (55)
431 smart00108 B_lectin Bulb-type 62.5 44 0.00094 22.3 6.6 29 22-55 42-70 (114)
432 TIGR03606 non_repeat_PQQ dehyd 61.2 31 0.00068 29.5 6.3 51 38-94 30-90 (454)
433 KOG4659|consensus 61.0 14 0.00031 35.7 4.5 82 40-121 595-705 (1899)
434 KOG2247|consensus 60.4 2.5 5.3E-05 36.6 -0.4 98 2-107 81-183 (615)
435 PF01436 NHL: NHL repeat; Int 60.1 21 0.00045 17.9 3.9 17 40-56 4-20 (28)
436 PRK11138 outer membrane biogen 60.0 93 0.002 25.3 9.2 43 63-106 343-388 (394)
437 cd03702 IF2_mtIF2_II This fami 59.4 27 0.00059 23.1 4.6 54 48-107 29-87 (95)
438 PF08728 CRT10: CRT10; InterP 59.0 44 0.00096 30.3 7.1 90 8-105 115-239 (717)
439 TIGR03032 conserved hypothetic 58.7 1E+02 0.0022 25.3 10.5 98 6-108 212-331 (335)
440 KOG1275|consensus 58.5 78 0.0017 29.7 8.5 103 6-120 146-254 (1118)
441 COG4247 Phy 3-phytase (myo-ino 58.5 16 0.00035 29.3 3.9 36 40-81 58-93 (364)
442 COG5290 IkappaB kinase complex 58.1 5.8 0.00013 36.4 1.5 87 1-94 252-348 (1243)
443 PF10214 Rrn6: RNA polymerase 57.4 99 0.0021 28.0 9.2 84 1-93 151-257 (765)
444 PF05935 Arylsulfotrans: Aryls 56.7 1.2E+02 0.0027 25.7 10.0 49 3-56 155-208 (477)
445 KOG2280|consensus 56.0 47 0.001 30.3 6.7 96 1-107 222-320 (829)
446 PF14761 HPS3_N: Hermansky-Pud 55.8 55 0.0012 25.2 6.3 41 64-104 37-81 (215)
447 PF13072 DUF3936: Protein of u 55.4 14 0.0003 20.6 2.2 27 96-122 9-35 (38)
448 PF10411 DsbC_N: Disulfide bon 54.6 12 0.00027 22.2 2.1 13 2-14 37-49 (57)
449 KOG2377|consensus 54.3 1E+02 0.0022 27.0 8.1 50 38-93 67-123 (657)
450 PF07250 Glyoxal_oxid_N: Glyox 54.0 47 0.001 25.9 5.8 79 22-103 49-138 (243)
451 PF12768 Rax2: Cortical protei 53.0 1.2E+02 0.0025 24.2 8.8 72 19-90 16-96 (281)
452 COG2133 Glucose/sorbosone dehy 52.4 34 0.00073 28.8 5.0 21 37-57 176-196 (399)
453 PF14783 BBS2_Mid: Ciliary BBS 52.2 75 0.0016 21.8 6.7 54 45-106 10-65 (111)
454 TIGR03118 PEPCTERM_chp_1 conse 51.5 1.2E+02 0.0025 25.0 7.7 70 1-72 28-117 (336)
455 PF14781 BBS2_N: Ciliary BBSom 51.2 88 0.0019 22.3 6.7 65 4-78 61-130 (136)
456 KOG3630|consensus 50.2 33 0.00072 32.8 5.0 54 1-57 204-263 (1405)
457 COG3211 PhoX Predicted phospha 49.1 40 0.00087 29.8 5.1 21 38-58 554-574 (616)
458 COG5290 IkappaB kinase complex 48.9 24 0.00052 32.6 3.8 60 42-103 206-267 (1243)
459 smart00135 LY Low-density lipo 48.8 39 0.00085 17.6 4.9 33 38-75 9-41 (43)
460 PF13970 DUF4221: Domain of un 48.0 1.4E+02 0.0031 23.8 8.3 70 4-80 51-130 (333)
461 PF03178 CPSF_A: CPSF A subuni 47.3 1.4E+02 0.003 23.5 9.9 97 3-107 135-260 (321)
462 PRK11138 outer membrane biogen 46.9 1.3E+02 0.0028 24.5 7.6 14 18-31 344-357 (394)
463 PF05096 Glu_cyclase_2: Glutam 45.2 1.6E+02 0.0034 23.5 10.7 84 6-98 138-246 (264)
464 PF13983 YsaB: YsaB-like lipop 45.1 17 0.00036 23.0 1.6 13 40-52 60-72 (77)
465 KOG2247|consensus 43.7 3.2 6.9E-05 35.9 -2.3 91 2-101 41-136 (615)
466 PF02333 Phytase: Phytase; In 43.4 58 0.0013 27.2 5.1 28 63-90 76-103 (381)
467 COG1770 PtrB Protease II [Amin 43.0 69 0.0015 28.8 5.7 64 39-103 130-194 (682)
468 PF13860 FlgD_ig: FlgD Ig-like 41.2 49 0.0011 20.8 3.5 35 66-100 28-69 (81)
469 KOG1983|consensus 40.9 60 0.0013 30.6 5.2 31 40-76 237-268 (993)
470 KOG4499|consensus 40.3 1.3E+02 0.0028 24.0 6.3 30 18-47 232-263 (310)
471 KOG0673|consensus 38.7 6.2 0.00013 31.0 -1.2 83 52-134 71-167 (293)
472 KOG0184|consensus 38.4 39 0.00085 26.3 3.1 20 37-56 73-92 (254)
473 PF12566 DUF3748: Protein of u 38.3 18 0.00039 25.2 1.1 21 2-24 74-94 (122)
474 TIGR03032 conserved hypothetic 37.7 1.6E+02 0.0034 24.3 6.6 67 23-99 189-257 (335)
475 KOG2444|consensus 37.3 2E+02 0.0044 22.5 7.9 92 8-107 71-172 (238)
476 TIGR02171 Fb_sc_TIGR02171 Fibr 37.2 1E+02 0.0022 28.8 6.0 56 2-57 356-418 (912)
477 PF09142 TruB_C: tRNA Pseudour 36.8 44 0.00096 19.9 2.6 13 2-14 31-43 (56)
478 smart00564 PQQ beta-propeller 36.2 60 0.0013 16.1 4.1 27 5-34 5-31 (33)
479 PF01453 B_lectin: D-mannose b 33.8 1.5E+02 0.0032 19.9 5.9 40 17-56 27-70 (114)
480 PRK13614 lipoprotein LpqB; Pro 33.0 3.5E+02 0.0075 24.0 9.3 88 2-99 349-450 (573)
481 PF06268 Fascin: Fascin domain 33.0 1.5E+02 0.0032 19.7 5.0 11 46-56 51-61 (111)
482 PF03022 MRJP: Major royal jel 33.0 2.5E+02 0.0053 22.2 9.2 69 2-72 192-276 (287)
483 PF08954 DUF1900: Domain of un 33.0 1.8E+02 0.0039 20.6 5.8 51 38-93 11-67 (136)
484 COG5497 Predicted secreted pro 32.8 30 0.00064 26.8 1.7 16 1-16 27-42 (228)
485 COG4831 Roadblock/LC7 domain [ 32.1 27 0.00059 23.5 1.2 18 39-56 61-78 (109)
486 TIGR03118 PEPCTERM_chp_1 conse 32.0 2.9E+02 0.0062 22.8 7.2 96 6-106 150-273 (336)
487 PF08596 Lgl_C: Lethal giant l 30.6 3.2E+02 0.0069 22.8 7.9 57 8-72 98-172 (395)
488 PF05787 DUF839: Bacterial pro 29.9 1.4E+02 0.0029 26.1 5.4 18 82-99 501-518 (524)
489 PRK11657 dsbG disulfide isomer 29.5 67 0.0015 24.9 3.2 15 42-56 60-74 (251)
490 PF08596 Lgl_C: Lethal giant l 29.3 1.1E+02 0.0023 25.6 4.5 58 7-73 272-335 (395)
491 PF11635 Med16: Mediator compl 29.0 1.4E+02 0.003 27.2 5.5 48 7-56 271-339 (753)
492 PF07646 Kelch_2: Kelch motif; 28.8 90 0.002 17.3 3.0 25 4-28 9-39 (49)
493 COG4246 Uncharacterized protei 28.8 1E+02 0.0022 24.9 4.0 68 38-106 74-157 (340)
494 PF13313 DUF4082: Domain of un 28.4 1.4E+02 0.0029 21.7 4.4 13 3-15 53-65 (149)
495 cd03444 Thioesterase_II_repeat 28.2 53 0.0012 21.7 2.2 46 10-57 46-100 (104)
496 PF05935 Arylsulfotrans: Aryls 28.1 3.8E+02 0.0082 22.8 8.1 51 43-101 153-208 (477)
497 TIGR01455 glmM phosphoglucosam 28.0 10 0.00022 31.8 -1.7 31 46-78 88-118 (443)
498 PF13418 Kelch_4: Galactose ox 27.9 59 0.0013 17.9 2.0 25 5-29 11-39 (49)
499 PF14779 BBS1: Ciliary BBSome 27.2 2.8E+02 0.006 22.0 6.3 26 9-36 197-222 (257)
500 TIGR03075 PQQ_enz_alc_DH PQQ-d 27.1 1.8E+02 0.0038 25.2 5.6 44 7-52 472-518 (527)
No 1
>KOG2314|consensus
Probab=99.92 E-value=1.5e-26 Score=192.20 Aligned_cols=134 Identities=46% Similarity=0.757 Sum_probs=123.2
Q ss_pred CeEecCCCEEEEEecC-CCCeEEEEECC--CceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876 1 MKLRMRGTHIVLAELR-DTGSLEFVDTG--DFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~-~dg~i~iWd~~--~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l 77 (143)
+.|||.|++++.++.. ..|.+.|+|++ +.+.+...+|...+.+.|+|.|||++|+++.|+.+.|++++||+++|++|
T Consensus 498 vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 498 VFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred EEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHHH
Confidence 5799999999998764 57999999988 55666666788999999999999999999999999999999999999999
Q ss_pred EeccCCcEEEEEEeeCCCeeeecCchhhHHhhhhhhchhccHHhHHHHhhcccccee
Q psy5876 78 KRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKYADL 134 (143)
Q Consensus 78 ~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (143)
.+...+++..+.|+|.|+.++|..+.++||||||.|+++||++|.+++.+|+||..+
T Consensus 578 ~~~~i~~f~qF~WRPRPps~LS~e~~KkIkKnLKky~a~FeeqD~~e~~~AsrElve 634 (698)
T KOG2314|consen 578 KEDIIDRFKQFLWRPRPPSLLSEEKQKKIKKNLKKYSAQFEEQDRLEQSRASRELVE 634 (698)
T ss_pred HHHHHHHHHhhccCCCCCcccCHHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHH
Confidence 887778889999999999999999999999999999999999999999999999764
No 2
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.84 E-value=1.1e-20 Score=141.93 Aligned_cols=86 Identities=33% Similarity=0.588 Sum_probs=77.5
Q ss_pred CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876 1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR 79 (143)
Q Consensus 1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~ 79 (143)
|.|||+|++||+||++ ..|.|+|||+++.+.+.+.++..++.++||||||||+|+++.||++.|++++||+++|+++.+
T Consensus 106 i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 106 ISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred EEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence 5899999999999875 468899999999999999888889999999999999999999999999999999999999987
Q ss_pred ccCCcEE
Q psy5876 80 FNSPTFC 86 (143)
Q Consensus 80 ~~~~~v~ 86 (143)
...+.++
T Consensus 186 ~~~~~l~ 192 (194)
T PF08662_consen 186 KPFDELY 192 (194)
T ss_pred cchhhhh
Confidence 6654443
No 3
>KOG0271|consensus
Probab=99.81 E-value=8.2e-20 Score=147.08 Aligned_cols=99 Identities=18% Similarity=0.351 Sum_probs=88.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK 78 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~ 78 (143)
++|||||+|||+++| |..|++||..+|+.+.++. | ..|+.|+||.|.|+|++|| .|.++++|++..+.+.
T Consensus 373 V~fSPd~r~IASaSF--DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~S------kDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 373 VSFSPDGRYIASASF--DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGS------KDSTLKVWDVRTKKLK 444 (480)
T ss_pred EEECCCccEEEEeec--ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcC------CCceEEEEEeeeeeec
Confidence 579999999999996 8999999999999988874 3 5799999999999999999 7999999999877766
Q ss_pred e-c--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 79 R-F--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 79 ~-~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
. + |.+.|+++.|+|||+++++++.|+.+|
T Consensus 445 ~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~ 476 (480)
T KOG0271|consen 445 QDLPGHADEVFAVDWSPDGQRVASGGKDKVLR 476 (480)
T ss_pred ccCCCCCceEEEEEecCCCceeecCCCceEEE
Confidence 5 3 367999999999999999999998664
No 4
>KOG2315|consensus
Probab=99.75 E-value=4.2e-18 Score=141.86 Aligned_cols=96 Identities=22% Similarity=0.441 Sum_probs=88.7
Q ss_pred CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876 1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR 79 (143)
Q Consensus 1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~ 79 (143)
+.|||.|++|+.|||+ ..|.|+|||+.+.+++.++.....+-+.|+|||+||+|+++.+|++.||+++||+++|.+++.
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~ 396 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE 396 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh
Confidence 4699999999999998 789999999999999999988889999999999999999999999999999999999999998
Q ss_pred ccCC-cEEEEEEeeCCCe
Q psy5876 80 FNSP-TFCQLRWRPRPAS 96 (143)
Q Consensus 80 ~~~~-~v~~l~wsP~~~~ 96 (143)
.... .++.+.|+|-...
T Consensus 397 ~~f~sEL~qv~W~P~~~~ 414 (566)
T KOG2315|consen 397 KMFKSELLQVEWRPFNDK 414 (566)
T ss_pred hhhhHhHhheeeeecCCc
Confidence 7655 7999999988765
No 5
>KOG0263|consensus
Probab=99.74 E-value=6e-18 Score=144.79 Aligned_cols=99 Identities=16% Similarity=0.304 Sum_probs=87.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
++|.||+.|+|+|+ .|.+||+||+.+|..+..| |..+|++++|||+|+|||+|+ .|+.|+|||+. |+++
T Consensus 541 v~FHPNs~Y~aTGS--sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~------ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 541 VSFHPNSNYVATGS--SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD------EDGLIKIWDLANGSLV 612 (707)
T ss_pred EEECCcccccccCC--CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc------cCCcEEEEEcCCCcch
Confidence 47999999999998 6999999999998766554 557899999999999999999 69999999995 6666
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
..+ |.+.|+++.|+++|..||+++.|..|+
T Consensus 613 ~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~ 644 (707)
T KOG0263|consen 613 KQLKGHTGTIYSLSFSRDGNVLASGGADNSVR 644 (707)
T ss_pred hhhhcccCceeEEEEecCCCEEEecCCCCeEE
Confidence 543 578999999999999999999999887
No 6
>KOG0271|consensus
Probab=99.73 E-value=6.3e-18 Score=136.27 Aligned_cols=99 Identities=19% Similarity=0.373 Sum_probs=84.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l 77 (143)
++|||+|++||+|+ .|.++||||.++..++.+. |.+.|.+++|||||+.||+|+ .|+.|++||. .|+++
T Consensus 121 ~~fsp~g~~l~tGs--GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~------~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGS--GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGS------KDGSIRLWDPKTGQQI 192 (480)
T ss_pred EEecCCCceEEecC--CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccc------cCCeEEEecCCCCCcc
Confidence 47999999999998 6999999999887666554 456899999999999999999 7999999998 57766
Q ss_pred Ee-c--cCCcEEEEEEeeC-----CCeeeecCchhhHH
Q psy5876 78 KR-F--NSPTFCQLRWRPR-----PASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~-~--~~~~v~~l~wsP~-----~~~l~s~s~d~~i~ 107 (143)
-. + |...|.+++|.|- ..+|+|+|.|+.||
T Consensus 193 g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vr 230 (480)
T KOG0271|consen 193 GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVR 230 (480)
T ss_pred cccccCcccceeEEeecccccCCCccceecccCCCCEE
Confidence 43 3 4678999999764 56899999999887
No 7
>KOG0272|consensus
Probab=99.73 E-value=3.9e-18 Score=138.33 Aligned_cols=99 Identities=14% Similarity=0.241 Sum_probs=87.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEE--eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVM--NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~--~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l 77 (143)
++|.|+|+||+++++ |.+-++||+.+...+ ...|..+|.+|+|.|||..++||+ .|..-+|||+ +|+++
T Consensus 267 VafHPsG~~L~Tasf--D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG------lD~~~RvWDlRtgr~i 338 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASF--DSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG------LDSLGRVWDLRTGRCI 338 (459)
T ss_pred eeecCCCceeeeccc--ccchhhcccccchhhHhhcccccccceeEecCCCceeeccC------ccchhheeecccCcEE
Confidence 589999999999996 899999999987543 344556899999999999999999 7999999999 69987
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
..+ |..+|++++|+|+|..|+|||.|.++|
T Consensus 339 m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~k 370 (459)
T KOG0272|consen 339 MFLAGHIKEILSVAFSPNGYHLATGSSDNTCK 370 (459)
T ss_pred EEecccccceeeEeECCCceEEeecCCCCcEE
Confidence 654 578999999999999999999999876
No 8
>KOG0279|consensus
Probab=99.71 E-value=9.6e-17 Score=124.94 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=87.8
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR 79 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~ 79 (143)
..||||++.++++ -|+++++||+.+++....+ |...|.++++|||.+.|+||| .|+++++|+.-|.+.++
T Consensus 70 ~~s~dg~~alS~s--wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS------rDkTiklwnt~g~ck~t 141 (315)
T KOG0279|consen 70 VLSSDGNFALSAS--WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS------RDKTIKLWNTLGVCKYT 141 (315)
T ss_pred EEccCCceEEecc--ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCC------CcceeeeeeecccEEEE
Confidence 5799999999999 4999999999998877766 345799999999999999999 69999999999998876
Q ss_pred cc----CCcEEEEEEeeC--CCeeeecCchhhHH
Q psy5876 80 FN----SPTFCQLRWRPR--PASLLSKEQVDKIK 107 (143)
Q Consensus 80 ~~----~~~v~~l~wsP~--~~~l~s~s~d~~i~ 107 (143)
.. .+-|.++.|+|+ .+.|+++|.|+++|
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvK 175 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVK 175 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEE
Confidence 53 457999999999 79999999999998
No 9
>KOG0266|consensus
Probab=99.70 E-value=1.6e-16 Score=132.88 Aligned_cols=99 Identities=20% Similarity=0.366 Sum_probs=87.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEEC-CCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDT-GDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~-~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~ 76 (143)
++|||||++|++++ .|++|+|||+ ..+..+.++ |...|++++|+|+|+.+++|+ .|++|+|||+. |++
T Consensus 209 ~~fs~d~~~l~s~s--~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs------~D~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGS--DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS------DDGTVRIWDVRTGEC 280 (456)
T ss_pred eEECCCCcEEEEec--CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEec------CCCcEEEEeccCCeE
Confidence 58999999999999 6999999999 555676665 335799999999999999999 69999999996 677
Q ss_pred EEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 77 IKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 77 l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+..+ |...|..++|+|+|..|++++.|+.|+
T Consensus 281 ~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 281 VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred EEeeeccCCceEEEEECCCCCEEEEcCCCccEE
Confidence 7765 577999999999999999999999886
No 10
>KOG0272|consensus
Probab=99.70 E-value=3.3e-17 Score=133.02 Aligned_cols=99 Identities=13% Similarity=0.184 Sum_probs=88.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-II 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l 77 (143)
++|.|||..+++|| .|..-+|||+.++.++..++ ..+|.+++|||+|.+||||| .|++++|||+.++ ++
T Consensus 309 iaf~~DGSL~~tGG--lD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs------~Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 309 IAFQPDGSLAATGG--LDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS------SDNTCKVWDLRMRSEL 380 (459)
T ss_pred eEecCCCceeeccC--ccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC------CCCcEEEeeecccccc
Confidence 58999999999999 58999999999999988764 35899999999999999999 6999999999765 56
Q ss_pred Eec--cCCcEEEEEEee-CCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRP-RPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP-~~~~l~s~s~d~~i~ 107 (143)
+.. |.+.|..+.|+| -|..|+|+|.|.+++
T Consensus 381 y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~k 413 (459)
T KOG0272|consen 381 YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVK 413 (459)
T ss_pred eecccccchhhheEecccCCeEEEEcccCccee
Confidence 665 478999999999 789999999999987
No 11
>KOG0645|consensus
Probab=99.70 E-value=1.7e-16 Score=123.20 Aligned_cols=99 Identities=18% Similarity=0.401 Sum_probs=85.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECC--CceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--C
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTG--DFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--G 74 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~--~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g 74 (143)
++|||.|++||+|+| |+++.||.-. +++++.+++. ..|.+++||++|+|||||| .|+.+.||.++ +
T Consensus 67 vAwsp~g~~La~aSF--D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCS------RDKSVWiWe~dedd 138 (312)
T KOG0645|consen 67 VAWSPHGRYLASASF--DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCS------RDKSVWIWEIDEDD 138 (312)
T ss_pred eeecCCCcEEEEeec--cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEee------CCCeEEEEEecCCC
Confidence 689999999999996 8999999966 5678877653 5799999999999999999 69999999996 2
Q ss_pred c--EEE--eccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 75 K--IIK--RFNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 75 ~--~l~--~~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
. ++. +.|...|..+.|+|.-..|+|+|.|.+||
T Consensus 139 Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk 175 (312)
T KOG0645|consen 139 EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIK 175 (312)
T ss_pred cEEEEeeeccccccccEEEEcCCcceeEEeccCCeEE
Confidence 2 222 23567899999999999999999999996
No 12
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.67 E-value=9e-16 Score=115.29 Aligned_cols=98 Identities=13% Similarity=0.260 Sum_probs=79.0
Q ss_pred CeEecCCCEEEEE-ecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876 1 MKLRMRGTHIVLA-ELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK 78 (143)
Q Consensus 1 i~~SPdG~~las~-~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~ 78 (143)
++|||+|+.+|+. |. .++.|.|||++ ++.+..++...++.|.|||+|++||+++.. ...+.+.+||.+ .+.+.
T Consensus 65 ~~WsP~g~~favi~g~-~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~---n~~G~l~~wd~~~~~~i~ 139 (194)
T PF08662_consen 65 VAWSPNGNEFAVIYGS-MPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFG---NLNGDLEFWDVRKKKKIS 139 (194)
T ss_pred EEECcCCCEEEEEEcc-CCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEcc---CCCcEEEEEECCCCEEee
Confidence 5899999998765 32 46799999997 677777776788999999999999999831 023569999996 56777
Q ss_pred eccCCcEEEEEEeeCCCeeeecCch
Q psy5876 79 RFNSPTFCQLRWRPRPASLLSKEQV 103 (143)
Q Consensus 79 ~~~~~~v~~l~wsP~~~~l~s~s~d 103 (143)
+.....+..++|+|+|++++++...
T Consensus 140 ~~~~~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 140 TFEHSDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred ccccCcEEEEEEcCCCCEEEEEEec
Confidence 7666678999999999999998754
No 13
>PTZ00421 coronin; Provisional
Probab=99.65 E-value=1.7e-15 Score=128.03 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=82.3
Q ss_pred CeEec-CCCEEEEEecCCCCeEEEEECCCce-------EEeee--ccCceEEEEECCCC-CEEEEeecCcceecCCcEEE
Q psy5876 1 MKLRM-RGTHIVLAELRDTGSLEFVDTGDFS-------VMNAA--EHHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQ 69 (143)
Q Consensus 1 i~~SP-dG~~las~~~~~dg~i~iWd~~~~~-------~~~~~--~~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~i 69 (143)
++|+| |+++||+|+ .||+|++||+.+.. .+..+ |...|.+++|+|++ .+|++++ .|+.|+|
T Consensus 81 v~fsP~d~~~LaSgS--~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs------~DgtVrI 152 (493)
T PTZ00421 81 VAFNPFDPQKLFTAS--EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG------ADMVVNV 152 (493)
T ss_pred EEEcCCCCCEEEEEe--CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe------CCCEEEE
Confidence 57999 899999999 69999999987542 23333 33579999999986 6899999 6999999
Q ss_pred Eeec-CcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 70 WSFQ-GKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 70 W~~~-g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
||+. |+.+... +...|.+++|+|+|..|++++.|++|+
T Consensus 153 WDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~Ir 193 (493)
T PTZ00421 153 WDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLN 193 (493)
T ss_pred EECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEE
Confidence 9995 6666554 467899999999999999999999886
No 14
>KOG0645|consensus
Probab=99.64 E-value=2e-15 Score=117.32 Aligned_cols=98 Identities=14% Similarity=0.310 Sum_probs=82.4
Q ss_pred CeEecC-CCEEEEEecCCCCeEEEEECCC---ceEEeee---ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 1 MKLRMR-GTHIVLAELRDTGSLEFVDTGD---FSVMNAA---EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 1 i~~SPd-G~~las~~~~~dg~i~iWd~~~---~~~~~~~---~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
++|+|- |..||+|| .|..|++|++.. ..+.... |...|.+++|||.|+|||+|| .|.++.||.-.
T Consensus 20 ~awhp~~g~ilAscg--~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS------FD~t~~Iw~k~ 91 (312)
T KOG0645|consen 20 VAWHPGKGVILASCG--TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS------FDATVVIWKKE 91 (312)
T ss_pred EEeccCCceEEEeec--CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee------ccceEEEeecC
Confidence 589999 99999999 699999999884 4554433 345799999999999999999 79999999874
Q ss_pred -Cc--EEEec--cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 74 -GK--IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 74 -g~--~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
|. ++... |.+.|.+++|+++|.+|+|++.|+.+
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSV 129 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSV 129 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeE
Confidence 33 55544 57899999999999999999999876
No 15
>KOG0293|consensus
Probab=99.64 E-value=5.9e-16 Score=125.89 Aligned_cols=99 Identities=13% Similarity=0.266 Sum_probs=82.2
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC---ceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-C
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD---FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-G 74 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~---~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g 74 (143)
+.|||||+|||+|+ .|.+.-||++.. .++.++. ++.+|.-|.||||.|||++|+ .|..+.+||++ |
T Consensus 230 l~FS~nGkyLAsaS--kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg------~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 230 LQFSHNGKYLASAS--KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG------FDEVLSLWDVDTG 301 (519)
T ss_pred EEEcCCCeeEeecc--CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC------chHheeeccCCcc
Confidence 47999999999999 699999999652 3445554 457899999999999999999 57789999995 7
Q ss_pred cEEEecc---CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 75 KIIKRFN---SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 75 ~~l~~~~---~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.+.+... ...+.+.+|-|||..+++|+.|.+|-
T Consensus 302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 7776654 35789999999999999999987653
No 16
>KOG0266|consensus
Probab=99.64 E-value=2.2e-15 Score=126.01 Aligned_cols=99 Identities=17% Similarity=0.337 Sum_probs=85.2
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc--
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK-- 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~-- 75 (143)
++|+|+|++|++|+ .|++|+|||+.+++++..+. ...|+.++|+|||++|++++ .|+.++|||+. |.
T Consensus 252 ~~f~p~g~~i~Sgs--~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s------~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 252 VAFSPDGNLLVSGS--DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS------YDGTIRVWDLETGSKL 323 (456)
T ss_pred EEecCCCCEEEEec--CCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC------CCccEEEEECCCCcee
Confidence 47999999999999 59999999999998887763 45899999999999999998 69999999995 55
Q ss_pred EEEecc---CC-cEEEEEEeeCCCeeeecCchhhHH
Q psy5876 76 IIKRFN---SP-TFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 76 ~l~~~~---~~-~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
++.... .. .+..+.|+|+|..++++..|+.++
T Consensus 324 ~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 324 CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 233332 23 699999999999999999998887
No 17
>KOG0275|consensus
Probab=99.62 E-value=1.9e-16 Score=126.07 Aligned_cols=105 Identities=16% Similarity=0.277 Sum_probs=90.0
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeee----------ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA----------EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS 71 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~----------~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~ 71 (143)
.|||||+||++|+ .||-|++||.-+|++-.-. ....|.+++||.|...+|+|+ .|+.|++|.
T Consensus 220 ~FSPDgqyLvsgS--vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs------qDGkIKvWr 291 (508)
T KOG0275|consen 220 RFSPDGQYLVSGS--VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS------QDGKIKVWR 291 (508)
T ss_pred eeCCCCceEeecc--ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC------cCCcEEEEE
Confidence 6999999999999 6999999998877653211 124799999999999999999 699999999
Q ss_pred e-cCcEEEec---cCCcEEEEEEeeCCCeeeecCchhhHH-------hhhhhhc
Q psy5876 72 F-QGKIIKRF---NSPTFCQLRWRPRPASLLSKEQVDKIK-------KSLKKYT 114 (143)
Q Consensus 72 ~-~g~~l~~~---~~~~v~~l~wsP~~~~l~s~s~d~~i~-------~~~~~~~ 114 (143)
+ +|.|++++ |...|.++.|+.|+..++|++-|.++| |.+|++-
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr 345 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR 345 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc
Confidence 9 59999875 467999999999999999999999988 6666554
No 18
>KOG0293|consensus
Probab=99.62 E-value=5.6e-16 Score=126.02 Aligned_cols=99 Identities=15% Similarity=0.258 Sum_probs=88.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc---CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH---HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~---~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l 77 (143)
|.||||.+||++|++ +..+.+||+.+|.+...+++ ..+++++|-|||..+++|+ .|.++..||.+|+.+
T Consensus 275 i~wSPDdryLlaCg~--~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs------~dr~i~~wdlDgn~~ 346 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGF--DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGS------PDRTIIMWDLDGNIL 346 (519)
T ss_pred EEECCCCCeEEecCc--hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecC------CCCcEEEecCCcchh
Confidence 579999999999995 67799999999988776643 5789999999999999999 599999999999999
Q ss_pred Eecc---CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRFN---SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~~---~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
..+. ...|++++.+|||+++++...|+.|+
T Consensus 347 ~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~ 379 (519)
T KOG0293|consen 347 GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIR 379 (519)
T ss_pred hcccccccceeEEEEEcCCCcEEEEEeccccee
Confidence 8876 45699999999999999999998885
No 19
>KOG0284|consensus
Probab=99.60 E-value=2.2e-15 Score=122.15 Aligned_cols=99 Identities=17% Similarity=0.303 Sum_probs=87.1
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCc--eEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF--SVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~--~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l 77 (143)
++|||+...+++|+ +||+|+|||.... +.+...|+-.|.++.|+|.-..||++| .|+.|++||. .|.+|
T Consensus 186 lafSpnDskF~t~S--dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgs------kDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 186 LAFSPNDSKFLTCS--DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGS------KDNLVKLWDPRSGSCL 257 (464)
T ss_pred eccCCCCceeEEec--CCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEcc------CCceeEeecCCCcchh
Confidence 58999999999999 7999999997643 344566666899999999999999999 6999999999 59999
Q ss_pred Eecc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRFN--SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.+.+ .+.|..+.|+|++++|+|+|.|+.+|
T Consensus 258 ~tlh~HKntVl~~~f~~n~N~Llt~skD~~~k 289 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCK 289 (464)
T ss_pred hhhhhccceEEEEEEcCCCCeeEEccCCceEE
Confidence 8764 78999999999999999999999764
No 20
>PTZ00420 coronin; Provisional
Probab=99.60 E-value=1e-14 Score=124.83 Aligned_cols=99 Identities=10% Similarity=0.192 Sum_probs=79.3
Q ss_pred CeEecC-CCEEEEEecCCCCeEEEEECCCce--------EEee--eccCceEEEEECCCCCEE-EEeecCcceecCCcEE
Q psy5876 1 MKLRMR-GTHIVLAELRDTGSLEFVDTGDFS--------VMNA--AEHHQATDVEWDPTGRYV-MSGVSLWKTKADTGYW 68 (143)
Q Consensus 1 i~~SPd-G~~las~~~~~dg~i~iWd~~~~~--------~~~~--~~~~~v~~i~wsPdG~~l-at~s~~~~~~~D~~i~ 68 (143)
++|+|+ +++||+|+ .||+|++||+.+.. .+.. .|...|.+++|+|++.++ |+++ .|+.++
T Consensus 80 lafsP~~~~lLASgS--~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS------~DgtIr 151 (568)
T PTZ00420 80 LQFNPCFSEILASGS--EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG------FDSFVN 151 (568)
T ss_pred EEEcCCCCCEEEEEe--CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe------CCCeEE
Confidence 579997 89999999 69999999987531 1122 233579999999999875 6777 699999
Q ss_pred EEeec-CcEEEec-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 69 QWSFQ-GKIIKRF-NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 69 iW~~~-g~~l~~~-~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
|||+. ++.+... +...|.+++|+|+|..|++++.|+.|+
T Consensus 152 IWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~Ir 192 (568)
T PTZ00420 152 IWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMH 192 (568)
T ss_pred EEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEE
Confidence 99995 6655544 356899999999999999999888776
No 21
>KOG0263|consensus
Probab=99.59 E-value=3.3e-15 Score=128.10 Aligned_cols=99 Identities=19% Similarity=0.301 Sum_probs=87.2
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l 77 (143)
+.|+|.|=|+|+|+ .|++.++|..+..+.+..+ |...|.++.|+|++.|+|||| .|.++++||+ +|..+
T Consensus 499 V~F~P~GyYFatas--~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGS------sD~tVRlWDv~~G~~V 570 (707)
T KOG0263|consen 499 VQFAPRGYYFATAS--HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGS------SDRTVRLWDVSTGNSV 570 (707)
T ss_pred EEecCCceEEEecC--CCceeeeeecccCCchhhhcccccccceEEECCcccccccCC------CCceEEEEEcCCCcEE
Confidence 47999999999998 6999999999876655443 446899999999999999999 6999999999 68877
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+.+ |..+|.+++|+|+|.+|+||++|+.|+
T Consensus 571 RiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 571 RIFTGHKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred EEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence 655 688999999999999999999999886
No 22
>KOG0273|consensus
Probab=99.56 E-value=1.8e-14 Score=118.53 Aligned_cols=99 Identities=18% Similarity=0.343 Sum_probs=84.5
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCC---------EEEEeecCcceecCCcEEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGR---------YVMSGVSLWKTKADTGYWQ 69 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~---------~lat~s~~~~~~~D~~i~i 69 (143)
|.|.|.|..|++++ +|++++||..........++ ...|+.+.|||+|. .+++++ .|+++++
T Consensus 365 lk~n~tg~LLaS~S--dD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas------~dstV~l 436 (524)
T KOG0273|consen 365 LKWNPTGSLLASCS--DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS------FDSTVKL 436 (524)
T ss_pred EEECCCCceEEEec--CCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee------cCCeEEE
Confidence 46999999999999 79999999987655555443 35799999999865 577777 6999999
Q ss_pred Eee-cCcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 70 WSF-QGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 70 W~~-~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
||+ .|.+++.+ |..+|++++|+|+|.+|++|+-|+-|.
T Consensus 437 wdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~ 477 (524)
T KOG0273|consen 437 WDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVH 477 (524)
T ss_pred EEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeE
Confidence 999 59999876 578999999999999999999998765
No 23
>KOG1273|consensus
Probab=99.56 E-value=1.2e-14 Score=115.24 Aligned_cols=92 Identities=17% Similarity=0.368 Sum_probs=78.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l 77 (143)
+.|||.|.+||+|. .||.|.|||..|+..-..+ |-.+|++++||||||.|+|+| .|+.+++||+ .|.++
T Consensus 29 ~~Fs~~G~~lAvGc--~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS------~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGC--ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSS------RDWSIKLWDLLKGSPL 100 (405)
T ss_pred EEeccCcceeeeec--cCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeec------CCceeEEEeccCCCce
Confidence 46999999999998 6999999999987643333 346899999999999999999 6999999999 69999
Q ss_pred Eecc-CCcEEEEEEeeCCCeeeec
Q psy5876 78 KRFN-SPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 78 ~~~~-~~~v~~l~wsP~~~~l~s~ 100 (143)
++.. ..+|+...|+|.....+-+
T Consensus 101 ~rirf~spv~~~q~hp~k~n~~va 124 (405)
T KOG1273|consen 101 KRIRFDSPVWGAQWHPRKRNKCVA 124 (405)
T ss_pred eEEEccCccceeeeccccCCeEEE
Confidence 8876 6799999999987654433
No 24
>KOG0291|consensus
Probab=99.55 E-value=2.8e-14 Score=122.67 Aligned_cols=105 Identities=17% Similarity=0.270 Sum_probs=86.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcc------------------
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWK------------------ 60 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~------------------ 60 (143)
+++||||++||+|+ .||+|++||+.++-|+.++. | ..|+.+.|+.+|+.++++|-+.+
T Consensus 356 l~YSpDgq~iaTG~--eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P 433 (893)
T KOG0291|consen 356 LAYSPDGQLIATGA--EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP 433 (893)
T ss_pred EEECCCCcEEEecc--CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC
Confidence 47899999999999 79999999999999999883 3 57999999999999999984210
Q ss_pred -------eecC------------C-cEEEEeec-CcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 61 -------TKAD------------T-GYWQWSFQ-GKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 61 -------~~~D------------~-~i~iW~~~-g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
...| . .|.+|+++ |+++... |..+|.+++|+|+|..|+|+|-|++||
T Consensus 434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEE
Confidence 0111 1 35678884 7877654 577999999999999999999999998
No 25
>KOG0273|consensus
Probab=99.55 E-value=4.4e-14 Score=116.25 Aligned_cols=98 Identities=20% Similarity=0.382 Sum_probs=82.0
Q ss_pred CeEecCCC---------EEEEEecCCCCeEEEEECCCceEEeee-c-cCceEEEEECCCCCEEEEeecCcceecCCcEEE
Q psy5876 1 MKLRMRGT---------HIVLAELRDTGSLEFVDTGDFSVMNAA-E-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ 69 (143)
Q Consensus 1 i~~SPdG~---------~las~~~~~dg~i~iWd~~~~~~~~~~-~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i 69 (143)
+.|||+|. .|+++++ |++|++||+..+.++.++ . ..+|++++|||+|+|+|+|+ .|+.|.|
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~--dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs------~dg~V~i 478 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASF--DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS------LDGCVHI 478 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeec--CCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC------CCCeeEe
Confidence 46888764 7888884 899999999999999987 3 35899999999999999999 6999999
Q ss_pred Eeec-CcEEEecc-CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 70 WSFQ-GKIIKRFN-SPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 70 W~~~-g~~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
|+.+ |++.+... .+.|+.++|+-+|..|..+-.|+.+
T Consensus 479 ws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~v 517 (524)
T KOG0273|consen 479 WSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSV 517 (524)
T ss_pred ccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCc
Confidence 9995 77777766 5678999999999877655445443
No 26
>KOG0295|consensus
Probab=99.55 E-value=5.1e-14 Score=112.98 Aligned_cols=93 Identities=13% Similarity=0.259 Sum_probs=82.0
Q ss_pred CCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEecc--
Q psy5876 7 GTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRFN-- 81 (143)
Q Consensus 7 G~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~~-- 81 (143)
|+++++++ .|++|++||+.++.++.++ +...|.+++|+|-|+||+++. .|+++++||++ +++++.+.
T Consensus 304 ~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca------DDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 304 GQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA------DDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred ccEEEeec--ccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe------cCCcEEEEEeccceeeeccCCC
Confidence 56999998 6999999999999999886 336799999999999999999 59999999996 66777654
Q ss_pred CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 82 SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 82 ~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
...|.++.|+-+-++++||+-|++++
T Consensus 376 ~hfvt~lDfh~~~p~VvTGsVdqt~K 401 (406)
T KOG0295|consen 376 EHFVTSLDFHKTAPYVVTGSVDQTVK 401 (406)
T ss_pred cceeEEEecCCCCceEEeccccceee
Confidence 66799999999999999999998775
No 27
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.54 E-value=1.7e-14 Score=119.66 Aligned_cols=134 Identities=21% Similarity=0.359 Sum_probs=113.8
Q ss_pred CeEecCCCEEEEEecC-CCCeEEEEECC-CceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876 1 MKLRMRGTHIVLAELR-DTGSLEFVDTG-DFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK 78 (143)
Q Consensus 1 i~~SPdG~~las~~~~-~dg~i~iWd~~-~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~ 78 (143)
+.|||.+++++.+||+ ..|.+.|||.. ..+++.++....++-+.|||||+|+.+....++.+.|+.++|||+.|..+.
T Consensus 321 ~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 321 IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 3589999999999997 67999999965 455666777778999999999999999998888889999999999886543
Q ss_pred e-----cc-----------------------------------CCcEEEEEEeeCCCeeeecCchhhHHhhhhhhchhcc
Q psy5876 79 R-----FN-----------------------------------SPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFE 118 (143)
Q Consensus 79 ~-----~~-----------------------------------~~~v~~l~wsP~~~~l~s~s~d~~i~~~~~~~~~~~e 118 (143)
. +. ..+...++|+|.++.++|.+..++++++++++...||
T Consensus 401 el~~~~W~p~~~~~ttsSs~~~h~~~~~~~~~k~~Ga~~~e~~rg~~k~Fa~r~~~p~~lt~~~~~K~~~~~~~~~~~~~ 480 (561)
T COG5354 401 ELTNITWDPSGQYVTTSSSCPKHKVEHGYKIFKIAGALYPEEARGGFKNFAWRPEPPSKLTIESAKKYVKPSRHRFVPFE 480 (561)
T ss_pred hhhhccccCCcccceeeccCCCCccccccccccccccccChhhhcccceeEEecCCCccCChhhhhhcccchhhhccccc
Confidence 1 00 1134568999999999999999999999999999999
Q ss_pred HHhHHHHhhcccccee
Q psy5876 119 AKDRQRMNKASKYADL 134 (143)
Q Consensus 119 ~~~~~~~~~~~~~~~~ 134 (143)
..+.+++++|.|+...
T Consensus 481 k~~~~~~dsa~r~s~p 496 (561)
T COG5354 481 KAVIMEADSANRSSAP 496 (561)
T ss_pred cccccccccccccccc
Confidence 9999999999887654
No 28
>KOG0283|consensus
Probab=99.53 E-value=2.2e-14 Score=123.59 Aligned_cols=98 Identities=15% Similarity=0.264 Sum_probs=87.2
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccC-ceEEEEECC-CCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHH-QATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSFQGKIIK 78 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~-~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~~g~~l~ 78 (143)
|+||-++ +|++++ .|.||++|++..-+++..|.|. .|++|+|+| |.+||++|| .|+.++||++..+.+.
T Consensus 375 lSWSKn~-fLLSSS--MDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGS------LD~KvRiWsI~d~~Vv 445 (712)
T KOG0283|consen 375 LSWSKNN-FLLSSS--MDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGS------LDGKVRLWSISDKKVV 445 (712)
T ss_pred cccccCC-eeEecc--ccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecc------cccceEEeecCcCeeE
Confidence 5798875 888988 5999999999999999999775 699999999 889999999 8999999999888877
Q ss_pred ecc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 79 RFN--SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 79 ~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.+. ...|.+++|+|||+..+-|+..+..+
T Consensus 446 ~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 446 DWNDLRDLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred eehhhhhhheeEEeccCCceEEEEEeccEEE
Confidence 664 67899999999999999998888665
No 29
>KOG2394|consensus
Probab=99.53 E-value=1.8e-14 Score=120.19 Aligned_cols=92 Identities=20% Similarity=0.362 Sum_probs=75.8
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
++|||||++||+.+ .||.+||+|.++.+++..++. ....+++|||||+||+||+ .|.-|.||++. ++.+
T Consensus 296 f~FS~DG~~LA~VS--qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG------EDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 296 FAFSPDGKYLATVS--QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG------EDDLVTVWSFEERRVV 367 (636)
T ss_pred eeEcCCCceEEEEe--cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC------CcceEEEEEeccceEE
Confidence 47999999999999 799999999999877655442 4789999999999999999 79999999995 6666
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCch
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQV 103 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d 103 (143)
..- |...|..++|-| +.-+.++.
T Consensus 368 ARGqGHkSWVs~VaFDp---ytt~~ee~ 392 (636)
T KOG2394|consen 368 ARGQGHKSWVSVVAFDP---YTTSTEEW 392 (636)
T ss_pred EeccccccceeeEeecc---cccccccc
Confidence 654 477899999988 44444433
No 30
>KOG0279|consensus
Probab=99.50 E-value=1.7e-13 Score=106.96 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=82.2
Q ss_pred CeEecC--CCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876 1 MKLRMR--GTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK 75 (143)
Q Consensus 1 i~~SPd--G~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~ 75 (143)
+.|||+ ..+|++++ -|++|++||+++.++...+. .+.++.+++||||..+++|+ .|+.+.+||+ +|+
T Consensus 154 vrfsP~~~~p~Ivs~s--~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg------kdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSAS--WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG------KDGEAMLWDLNEGK 225 (315)
T ss_pred EEEcCCCCCcEEEEcc--CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC------CCceEEEEEccCCc
Confidence 479999 67999999 59999999999988777653 35799999999999999999 7999999999 588
Q ss_pred EEEecc-CCcEEEEEEeeCCCeeeecCch
Q psy5876 76 IIKRFN-SPTFCQLRWRPRPASLLSKEQV 103 (143)
Q Consensus 76 ~l~~~~-~~~v~~l~wsP~~~~l~s~s~d 103 (143)
.++.+. ...|.+++|+|+-..|..+-..
T Consensus 226 ~lysl~a~~~v~sl~fspnrywL~~at~~ 254 (315)
T KOG0279|consen 226 NLYSLEAFDIVNSLCFSPNRYWLCAATAT 254 (315)
T ss_pred eeEeccCCCeEeeEEecCCceeEeeccCC
Confidence 888764 7899999999999988876544
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.50 E-value=4e-13 Score=99.68 Aligned_cols=99 Identities=18% Similarity=0.416 Sum_probs=83.7
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee-cc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-EH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
+.|+|+|+.|++++ .+|.|++||+.+++.+..+ .+ ..+.+++|+|++.++++++ .|+.+++|++. ++.+
T Consensus 183 ~~~~~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 183 VAFSPDGEKLLSSS--SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS------EDGTIRVWDLRTGECV 254 (289)
T ss_pred EEECCCcCEEEEec--CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc------CCCcEEEEEcCCceeE
Confidence 47999999999988 5899999999988777765 33 4799999999999999888 58999999996 6666
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
... +...+.+++|+|+++.|++++.|+.++
T Consensus 255 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 255 QTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred EEccccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence 554 356799999999999999999988663
No 32
>PTZ00421 coronin; Provisional
Probab=99.49 E-value=3.4e-13 Score=114.02 Aligned_cols=99 Identities=14% Similarity=0.196 Sum_probs=79.6
Q ss_pred CeEecCC-CEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876 1 MKLRMRG-THIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKI 76 (143)
Q Consensus 1 i~~SPdG-~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~ 76 (143)
++|+|++ ++|++++ .|++|+|||+.+++.+..+. ...|.+++|+|||++|++++ .|+.++|||+ +|+.
T Consensus 131 l~f~P~~~~iLaSgs--~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs------~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 131 VSFHPSAMNVLASAG--ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS------KDKKLNIIDPRDGTI 202 (493)
T ss_pred EEeCcCCCCEEEEEe--CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEec------CCCEEEEEECCCCcE
Confidence 4799986 6899998 59999999999988776653 35799999999999999999 6999999999 5777
Q ss_pred EEecc--C-CcEEEEEEeeCCCeeeecC----chhhHH
Q psy5876 77 IKRFN--S-PTFCQLRWRPRPASLLSKE----QVDKIK 107 (143)
Q Consensus 77 l~~~~--~-~~v~~l~wsP~~~~l~s~s----~d~~i~ 107 (143)
+.... . ..+..+.|.|++..+++.+ .|++|+
T Consensus 203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk 240 (493)
T PTZ00421 203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIM 240 (493)
T ss_pred EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence 76543 2 2355788999999888764 355554
No 33
>KOG1407|consensus
Probab=99.49 E-value=8.1e-14 Score=108.09 Aligned_cols=97 Identities=10% Similarity=0.139 Sum_probs=83.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l 77 (143)
|.|+|+|+|+|+|+ .|..+.+||++..-+...+. .-+|..++||-||+|||+|| .|.-|-|=++ +|..+
T Consensus 195 I~f~p~GryfA~Gs--ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS------EDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 195 IEFDPDGRYFATGS--ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS------EDHFIDIAEVETGDRV 266 (313)
T ss_pred EEECCCCceEeecc--ccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC------ccceEEeEecccCCeE
Confidence 57999999999999 69999999999876655543 35899999999999999999 6888888888 69999
Q ss_pred Eecc-CCcEEEEEEeeCCCeeeecCchhh
Q psy5876 78 KRFN-SPTFCQLRWRPRPASLLSKEQVDK 105 (143)
Q Consensus 78 ~~~~-~~~v~~l~wsP~~~~l~s~s~d~~ 105 (143)
.+.+ ..+-+.++|+|.-+.|+=+.+|+.
T Consensus 267 ~eI~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 267 WEIPCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred EEeeccCCceeEEecCCCceeeEEecCCC
Confidence 8876 678999999999999997776654
No 34
>KOG0973|consensus
Probab=99.49 E-value=8.2e-14 Score=122.83 Aligned_cols=99 Identities=15% Similarity=0.325 Sum_probs=83.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC------------------ceEEeee--ccCceEEEEECCCCCEEEEeecCcc
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD------------------FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWK 60 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~------------------~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~ 60 (143)
+.|||||+|||+|+ +|+.|.||.... .+.+..+ |...|.+++|+||+.+||++|
T Consensus 75 VR~S~dG~~lAsGS--DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s---- 148 (942)
T KOG0973|consen 75 VRFSPDGSYLASGS--DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS---- 148 (942)
T ss_pred EEECCCCCeEeecc--CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec----
Confidence 47999999999999 799999999661 1233333 345799999999999999999
Q ss_pred eecCCcEEEEee-cCcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 61 TKADTGYWQWSF-QGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 61 ~~~D~~i~iW~~-~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.|+.|.||+. +.+++... |...|..+.|-|-|++++|.++|++|+
T Consensus 149 --~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtik 196 (942)
T KOG0973|consen 149 --LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLK 196 (942)
T ss_pred --ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEE
Confidence 7999999998 46666554 577899999999999999999999987
No 35
>KOG0318|consensus
Probab=99.49 E-value=3.1e-13 Score=112.64 Aligned_cols=96 Identities=15% Similarity=0.288 Sum_probs=80.5
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec----c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-C
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE----H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-G 74 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~----~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g 74 (143)
+.|||||.++|++| .||++.+||-.+++.+..++ | ..|..++||||++.|+|+| .|++++|||+. +
T Consensus 196 VRysPDG~~Fat~g--sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S------aDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 196 VRYSPDGSRFATAG--SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS------ADKTIKIWDVSTN 267 (603)
T ss_pred EEECCCCCeEEEec--CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec------CCceEEEEEeecc
Confidence 47999999999999 69999999999999888764 3 4799999999999999999 79999999995 7
Q ss_pred cEEEecc-----CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 75 KIIKRFN-----SPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 75 ~~l~~~~-----~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
+++.++. .++...+.|. ...|+|.+-.+.|
T Consensus 268 slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~i 302 (603)
T KOG0318|consen 268 SLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTI 302 (603)
T ss_pred ceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEE
Confidence 7777764 2566777888 5578887766655
No 36
>KOG0291|consensus
Probab=99.48 E-value=2.5e-13 Score=116.89 Aligned_cols=107 Identities=18% Similarity=0.327 Sum_probs=90.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEee--eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
++|+..|.+||.|+. .=|.+-+|+-.+..-+.+ .|...++++++||||++||||+ .|+.|+|||.+ |-|+
T Consensus 313 ~~~N~tGDWiA~g~~-klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~------eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCS-KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA------EDGKVKVWNTQSGFCF 385 (893)
T ss_pred EEecccCCEEEEcCC-ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc------CCCcEEEEeccCceEE
Confidence 468889999999985 357999999665443333 3446799999999999999999 69999999996 7788
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH-------hhhhhhc
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK-------KSLKKYT 114 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~-------~~~~~~~ 114 (143)
.++ |...|..+.|+-+|+.|+|.|-|++|| +|+|+|+
T Consensus 386 vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft 431 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT 431 (893)
T ss_pred EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec
Confidence 775 578999999999999999999999999 7777776
No 37
>KOG0315|consensus
Probab=99.47 E-value=5e-13 Score=103.29 Aligned_cols=98 Identities=8% Similarity=0.079 Sum_probs=79.4
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCC------ceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGD------FSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~------~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
...|||++|+.+. ..|++.+|++-+ .+.+.++. ...+..+.+|||++||||+| .|++++||+.+
T Consensus 174 ~v~~dgsml~a~n--nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s------sdktv~iwn~~ 245 (311)
T KOG0315|consen 174 TVMPDGSMLAAAN--NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS------SDKTVKIWNTD 245 (311)
T ss_pred EEcCCCcEEEEec--CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec------CCceEEEEecC
Confidence 4569999999998 579999999653 33444443 24699999999999999999 69999999998
Q ss_pred CcEE----EeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 74 GKII----KRFNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 74 g~~l----~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+-.. .+.+..-+++.+||-||++|+|+|.|..+|
T Consensus 246 ~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 246 DFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTAR 283 (311)
T ss_pred CceeeEEEeecCCceEEeeeeccCccEEEecCCCCcee
Confidence 7621 122356899999999999999999998876
No 38
>KOG1407|consensus
Probab=99.47 E-value=1.8e-13 Score=106.12 Aligned_cols=99 Identities=19% Similarity=0.315 Sum_probs=76.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC-----------------------------------------ceEEeeec-c-
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-----------------------------------------FSVMNAAE-H- 37 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~-----------------------------------------~~~~~~~~-~- 37 (143)
+.|||+|++++.++ .|..|.+.|..+ .+.+.+.. |
T Consensus 112 i~wsp~g~~~~~~~--kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~ 189 (313)
T KOG1407|consen 112 ITWSPDGEYIAVGN--KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP 189 (313)
T ss_pred EEEcCCCCEEEEec--CcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC
Confidence 47999999999998 466777777541 11122221 2
Q ss_pred CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EEEecc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-IIKRFN--SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
..+.+|.|+|+|||||+|+ .|-.+-+||++.- +++.+. .-+|..++|+-+|++|+|+|+|..|-
T Consensus 190 snCicI~f~p~GryfA~Gs------ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 190 SNCICIEFDPDGRYFATGS------ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFID 256 (313)
T ss_pred cceEEEEECCCCceEeecc------ccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEE
Confidence 3688999999999999999 6999999999754 444443 45899999999999999999998653
No 39
>KOG0318|consensus
Probab=99.47 E-value=4e-13 Score=111.93 Aligned_cols=98 Identities=14% Similarity=0.307 Sum_probs=81.7
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEE----eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVM----NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~----~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~ 76 (143)
++.+|+|+++|.|+ .||.|++|.+...++. ...+...++++++||||.|||++. ..+.+.+||+..+.
T Consensus 449 vAv~~~~~~vaVGG--~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D------a~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGG--QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD------ASRKVVLYDVASRE 520 (603)
T ss_pred EEEcCCCCEEEEec--ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec------cCCcEEEEEcccCc
Confidence 47899999999999 7999999998864432 222346899999999999999998 57789999997665
Q ss_pred EEe----ccCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 77 IKR----FNSPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 77 l~~----~~~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
.+. +|...|.+++|+|+.++++|||.|-.|
T Consensus 521 ~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 521 VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred eecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence 542 368899999999999999999988755
No 40
>KOG0286|consensus
Probab=99.47 E-value=4.1e-13 Score=105.49 Aligned_cols=101 Identities=13% Similarity=0.224 Sum_probs=84.8
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECC-CCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSF-QGKII 77 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~-~g~~l 77 (143)
.|-+|++ |++++ .|.++-+||+++++++..++. ..|.+++.+| +++.|++|+ .|+..++||+ .|.+.
T Consensus 152 ~f~dD~~-ilT~S--GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~------cD~~aklWD~R~~~c~ 222 (343)
T KOG0286|consen 152 RFLDDNH-ILTGS--GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG------CDKSAKLWDVRSGQCV 222 (343)
T ss_pred EEcCCCc-eEecC--CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc------cccceeeeeccCccee
Confidence 3556654 45554 499999999999999888753 4699999999 999999999 5999999999 58888
Q ss_pred Eecc--CCcEEEEEEeeCCCeeeecCchhhHH-hhhh
Q psy5876 78 KRFN--SPTFCQLRWRPRPASLLSKEQVDKIK-KSLK 111 (143)
Q Consensus 78 ~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~-~~~~ 111 (143)
+.+. ...|+++.|.|+|..++|||+|++.| .++|
T Consensus 223 qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 223 QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred EeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence 8764 56899999999999999999999987 4444
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.46 E-value=6.2e-13 Score=117.53 Aligned_cols=99 Identities=10% Similarity=0.220 Sum_probs=79.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCc----e----EEeee-ccCceEEEEECC-CCCEEEEeecCcceecCCcEEEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF----S----VMNAA-EHHQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQW 70 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~----~----~~~~~-~~~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW 70 (143)
++|+|+|++||+|+ .||+|+|||..+. . ..... .+..+.+++|+| ++++||+++ .|+.|++|
T Consensus 489 i~fs~dg~~latgg--~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~------~Dg~v~lW 560 (793)
T PLN00181 489 IGFDRDGEFFATAG--VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSN------FEGVVQVW 560 (793)
T ss_pred EEECCCCCEEEEEe--CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEe------CCCeEEEE
Confidence 57999999999999 6999999997531 1 11122 245789999997 478999999 69999999
Q ss_pred eec-CcEEEec--cCCcEEEEEEee-CCCeeeecCchhhHH
Q psy5876 71 SFQ-GKIIKRF--NSPTFCQLRWRP-RPASLLSKEQVDKIK 107 (143)
Q Consensus 71 ~~~-g~~l~~~--~~~~v~~l~wsP-~~~~l~s~s~d~~i~ 107 (143)
|+. ++.+... |...|++++|+| ++..|+|++.|++|+
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~ 601 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVK 601 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEE
Confidence 995 6666554 567899999997 788999999999887
No 42
>PTZ00420 coronin; Provisional
Probab=99.45 E-value=1.4e-12 Score=111.85 Aligned_cols=96 Identities=8% Similarity=0.023 Sum_probs=75.4
Q ss_pred CeEecCCCEE-EEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHI-VLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~l-as~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
++|+|+|..+ ++++ .||+|+|||+.+++.+.... +..|.+++|+|||++|++++ .|+.++|||+. |+.+
T Consensus 131 Vaf~P~g~~iLaSgS--~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s------~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 131 IDWNPMNYYIMCSSG--FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC------VGKHMHIIDPRKQEIA 202 (568)
T ss_pred EEECCCCCeEEEEEe--CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe------cCCEEEEEECCCCcEE
Confidence 5799999875 6777 59999999999887665553 35799999999999999988 69999999995 7666
Q ss_pred Eec--cCCc-----EEEEEEeeCCCeeeecCchh
Q psy5876 78 KRF--NSPT-----FCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 78 ~~~--~~~~-----v~~l~wsP~~~~l~s~s~d~ 104 (143)
... |... ++...|+|++..|+|++.++
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~ 236 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK 236 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC
Confidence 654 3332 34445679999999987664
No 43
>KOG0319|consensus
Probab=99.45 E-value=3.7e-13 Score=115.38 Aligned_cols=99 Identities=11% Similarity=0.156 Sum_probs=89.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
+.|||+.+.+|+++ .|++|+||.++++.++.++++ ..|..++|-.+|++|++|+ .|+-++||++. +.|+
T Consensus 511 V~Fs~~dq~laT~S--gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~------adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 511 VSFSKNDQLLATCS--GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG------ADGLIKLWNIKTNECE 582 (775)
T ss_pred EEeccccceeEecc--CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc------CCCcEEEEeccchhhh
Confidence 57999999999998 799999999999999999873 3689999999999999999 69999999994 7788
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
... |.+.||+++-+|+..+++||+.|+.|.
T Consensus 583 ~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 583 MTLDAHNDRVWALSVSPLLDMFVTGGGDGRII 614 (775)
T ss_pred hhhhhccceeEEEeecCccceeEecCCCeEEE
Confidence 775 588999999999999999999998765
No 44
>KOG0973|consensus
Probab=99.45 E-value=2.7e-13 Score=119.59 Aligned_cols=92 Identities=22% Similarity=0.383 Sum_probs=76.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l 77 (143)
+.||||+.+||+++ .|++|.|||..+++++..+ |+..|..++|+|-|+||||-+ .|++++||.... .+.
T Consensus 135 v~Wsp~~~~lvS~s--~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqs------dDrtikvwrt~dw~i~ 206 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVS--LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQS------DDRTLKVWRTSDWGIE 206 (942)
T ss_pred eccCCCccEEEEec--ccceEEEEccccceeeeeeecccccccceEECCccCeeeeec------CCceEEEEEcccceee
Confidence 57999999999999 5999999999999887765 345799999999999999999 599999999743 222
Q ss_pred Eec--c------CCcEEEEEEeeCCCeeeec
Q psy5876 78 KRF--N------SPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 78 ~~~--~------~~~v~~l~wsP~~~~l~s~ 100 (143)
+.. + ...+..+.|||||++|++.
T Consensus 207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 207 KSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred EeeccchhhCCCcceeeecccCCCcCeecch
Confidence 221 1 4578999999999999986
No 45
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.45 E-value=1.4e-12 Score=96.71 Aligned_cols=99 Identities=16% Similarity=0.311 Sum_probs=80.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l 77 (143)
++|+|+|++|++++ .+|.+++||..+++..... +...+..+.|+|++++|++++ .|+.+++|+++. +.+
T Consensus 15 ~~~~~~~~~l~~~~--~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 15 VAFSPDGKLLATGS--GDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS------SDKTIRLWDLETGECV 86 (289)
T ss_pred EEEcCCCCEEEEee--cCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc------CCCeEEEEEcCcccce
Confidence 47999999999998 5899999999877654443 335688999999999999999 599999999964 555
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
... +...+.++.|+|+++.+++++.++.++
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~ 118 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118 (289)
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEecCCCeEE
Confidence 544 355899999999999999988677654
No 46
>KOG0283|consensus
Probab=99.44 E-value=1.8e-13 Score=118.05 Aligned_cols=98 Identities=15% Similarity=0.286 Sum_probs=78.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC------------------------------------------------c---
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD------------------------------------------------F--- 29 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~------------------------------------------------~--- 29 (143)
+.|||||+|||+|| .||.|+||.+-. .
T Consensus 273 mKFS~DGKyLAsaG--eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~ 350 (712)
T KOG0283|consen 273 MKFSHDGKYLASAG--EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLL 350 (712)
T ss_pred EEeCCCCceeeecC--CCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccC
Confidence 46999999999999 799999998532 0
Q ss_pred ---------eEEee--eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec-cCCcEEEEEEeeCC-C
Q psy5876 30 ---------SVMNA--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF-NSPTFCQLRWRPRP-A 95 (143)
Q Consensus 30 ---------~~~~~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~-~~~~v~~l~wsP~~-~ 95 (143)
+++.. .|...|.+++||-++ +|+++| +|+++++|++. ..+|..+ |.+-|++++|+|.. .
T Consensus 351 p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSS------MDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 351 PLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSS------MDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDR 423 (712)
T ss_pred CCccccccccchhhhhccchhheecccccCC-eeEecc------ccccEEeecCCCcceeeEEecCCeeEEEEecccCCC
Confidence 00111 122468999999765 889999 89999999995 5688776 57899999999976 6
Q ss_pred eeeecCchhhHH
Q psy5876 96 SLLSKEQVDKIK 107 (143)
Q Consensus 96 ~l~s~s~d~~i~ 107 (143)
+++||+-|+++|
T Consensus 424 yFiSGSLD~KvR 435 (712)
T KOG0283|consen 424 YFISGSLDGKVR 435 (712)
T ss_pred cEeecccccceE
Confidence 899999999998
No 47
>KOG0772|consensus
Probab=99.43 E-value=3.9e-13 Score=111.97 Aligned_cols=98 Identities=16% Similarity=0.274 Sum_probs=76.1
Q ss_pred eEecCCC-EEEEEecCCCCeEEEEECCCce----EEeeec-c---CceEEEEECCCCCEEEEeecCcceecCCcEEEEee
Q psy5876 2 KLRMRGT-HIVLAELRDTGSLEFVDTGDFS----VMNAAE-H---HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF 72 (143)
Q Consensus 2 ~~SPdG~-~las~~~~~dg~i~iWd~~~~~----~~~~~~-~---~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~ 72 (143)
+|.|+.+ .+++++ .||++||||+++.+ .+.+-. . -++++|+|+|||+.||+|. .|+.|.+|+.
T Consensus 275 ~whP~~k~~FlT~s--~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc------~DGSIQ~W~~ 346 (641)
T KOG0772|consen 275 CWHPDNKEEFLTCS--YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC------LDGSIQIWDK 346 (641)
T ss_pred ccccCcccceEEec--CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc------cCCceeeeec
Confidence 6899866 455666 59999999988533 222211 1 2689999999999999999 6999999997
Q ss_pred cCc------EEEeccC--CcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 73 QGK------IIKRFNS--PTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 73 ~g~------~l~~~~~--~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
-+. ++...|. ..|.++.||+||++|+|-+.|.++|
T Consensus 347 ~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 347 GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 432 3334453 3899999999999999999999887
No 48
>KOG0286|consensus
Probab=99.43 E-value=1.7e-12 Score=101.98 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=86.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc----CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH----HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~----~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~ 75 (143)
|+|.|+|.-+++|+ +|+++|+||+...+.+..+++ .+|++++||-.||+|.+|. .|.++.+||. .|+
T Consensus 235 v~ffP~G~afatGS--DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy------~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 235 VRFFPSGDAFATGS--DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY------DDFTCNVWDTLKGE 306 (343)
T ss_pred EEEccCCCeeeecC--CCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee------cCCceeEeeccccc
Confidence 57999999999999 799999999998666665543 4799999999999999998 5999999998 677
Q ss_pred EEEe--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 76 IIKR--FNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 76 ~l~~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.+-. -|.++|.++..+|||..+.|+|=|..+|
T Consensus 307 ~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lr 340 (343)
T KOG0286|consen 307 RVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLR 340 (343)
T ss_pred eEEEeeccCCeeEEEEECCCCcEEEecchhHhee
Confidence 6554 3688999999999999999999998775
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.42 E-value=2.1e-12 Score=114.22 Aligned_cols=99 Identities=13% Similarity=0.226 Sum_probs=82.0
Q ss_pred CeEec-CCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECC-CCCEEEEeecCcceecCCcEEEEeec-Cc
Q psy5876 1 MKLRM-RGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSFQ-GK 75 (143)
Q Consensus 1 i~~SP-dG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~~-g~ 75 (143)
++|+| ++++||+++ .||+|++||+.+++.+..+. ...|++++|+| +|.+|+||+ .|+.|++||+. +.
T Consensus 538 l~~~~~~~~~las~~--~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs------~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 538 ICWNSYIKSQVASSN--FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS------DDGSVKLWSINQGV 609 (793)
T ss_pred EEeccCCCCEEEEEe--CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc------CCCEEEEEECCCCc
Confidence 46776 588999999 59999999999888776653 35799999997 899999999 69999999995 77
Q ss_pred EEEecc-CCcEEEEEEe-eCCCeeeecCchhhHH
Q psy5876 76 IIKRFN-SPTFCQLRWR-PRPASLLSKEQVDKIK 107 (143)
Q Consensus 76 ~l~~~~-~~~v~~l~ws-P~~~~l~s~s~d~~i~ 107 (143)
.+.... ...+.++.|+ |+|..|++++.|+.|+
T Consensus 610 ~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~ 643 (793)
T PLN00181 610 SIGTIKTKANICCVQFPSESGRSLAFGSADHKVY 643 (793)
T ss_pred EEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEE
Confidence 666543 4679999995 5799999999998876
No 50
>KOG0265|consensus
Probab=99.42 E-value=1e-12 Score=103.44 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=79.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECC-CceEEe--eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTG-DFSVMN--AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~-~~~~~~--~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~ 76 (143)
+.|+|+|.+||+||+ |..|.+|++. ..+... +.|...|..+.|.+||..|++++ .|++++.||+ +|++
T Consensus 53 ~~F~P~gs~~aSgG~--Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~g------tDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGS--DRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCG------TDKTVRGWDAETGKR 124 (338)
T ss_pred EEECCCCCeEeecCC--cceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEec------CCceEEEEeccccee
Confidence 369999999999994 8999999965 333322 34556799999999999999999 5999999999 5999
Q ss_pred EEec--cCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876 77 IKRF--NSPTFCQLRWRPRPA-SLLSKEQVDKIK 107 (143)
Q Consensus 77 l~~~--~~~~v~~l~wsP~~~-~l~s~s~d~~i~ 107 (143)
+++. +...|+.+.=+-.|+ ++.|+++|+++|
T Consensus 125 ~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~k 158 (338)
T KOG0265|consen 125 IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLK 158 (338)
T ss_pred eehhccccceeeecCccccCCeEEEecCCCceEE
Confidence 8875 466788887655565 555889999987
No 51
>KOG0640|consensus
Probab=99.42 E-value=7e-13 Score=105.27 Aligned_cols=121 Identities=17% Similarity=0.328 Sum_probs=100.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee-----ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cC
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-----EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QG 74 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-----~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g 74 (143)
|+|.|.|.+|++|. +-.++++||+++.++...- +...|+++.+|+.|+..+|+| .|+.|+|||- .+
T Consensus 222 iSfHPsGefllvgT--dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS------kDG~IklwDGVS~ 293 (430)
T KOG0640|consen 222 ISFHPSGEFLLVGT--DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS------KDGAIKLWDGVSN 293 (430)
T ss_pred EeecCCCceEEEec--CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec------cCCcEEeeccccH
Confidence 58999999999998 4689999999998886542 235799999999999999999 7999999997 68
Q ss_pred cEEEec---c-CCcEEEEEEeeCCCeeeecCchhhHH-------hhhhhhchhccHHhHHHHhhcc
Q psy5876 75 KIIKRF---N-SPTFCQLRWRPRPASLLSKEQVDKIK-------KSLKKYTPAFEAKDRQRMNKAS 129 (143)
Q Consensus 75 ~~l~~~---~-~~~v~~l~wsP~~~~l~s~s~d~~i~-------~~~~~~~~~~e~~~~~~~~~~~ 129 (143)
+|+..+ | ...|++..|..+|++++|.+.|..++ +.+++|+..=-..-++.+..|+
T Consensus 294 rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAv 359 (430)
T KOG0640|consen 294 RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAV 359 (430)
T ss_pred HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhh
Confidence 888764 3 56899999999999999999999988 7788888654444555555554
No 52
>KOG0282|consensus
Probab=99.42 E-value=3.3e-13 Score=111.28 Aligned_cols=99 Identities=17% Similarity=0.317 Sum_probs=86.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCC-CEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
++||++|+.+++++| |+.|++||++||+++..++. ..++++.|.||+ ..|++|+ .|+.|+.||.. |+.+
T Consensus 264 ~~~s~~g~~fLS~sf--D~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~------sd~ki~~wDiRs~kvv 335 (503)
T KOG0282|consen 264 ASFNNCGTSFLSASF--DRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGG------SDKKIRQWDIRSGKVV 335 (503)
T ss_pred hhccccCCeeeeeec--ceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEec------CCCcEEEEeccchHHH
Confidence 579999999999996 89999999999999999875 468999999999 5666666 59999999994 7766
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+.. +-..|.++.|.|+|.+.+|.++|+.++
T Consensus 336 qeYd~hLg~i~~i~F~~~g~rFissSDdks~r 367 (503)
T KOG0282|consen 336 QEYDRHLGAILDITFVDEGRRFISSSDDKSVR 367 (503)
T ss_pred HHHHhhhhheeeeEEccCCceEeeeccCccEE
Confidence 664 356899999999999999999999776
No 53
>KOG0282|consensus
Probab=99.41 E-value=2.2e-13 Score=112.29 Aligned_cols=99 Identities=15% Similarity=0.265 Sum_probs=86.3
Q ss_pred CeEec-CCCEEEEEecCCCCeEEEEECCC-ceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876 1 MKLRM-RGTHIVLAELRDTGSLEFVDTGD-FSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK 75 (143)
Q Consensus 1 i~~SP-dG~~las~~~~~dg~i~iWd~~~-~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~ 75 (143)
+.|.| .|.+|++++ .|+.|+||++-. ++++.++. ..+|.+++|+++|+.|+|+| .|..+++||+ +|+
T Consensus 220 i~~fp~~~hLlLS~g--mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s------fD~~lKlwDtETG~ 291 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGG--MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSAS------FDRFLKLWDTETGQ 291 (503)
T ss_pred hhhccceeeEEEecC--CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeee------cceeeeeeccccce
Confidence 46888 899999999 599999999764 88888874 35799999999999999999 7999999999 699
Q ss_pred EEEeccC-CcEEEEEEeeCC-CeeeecCchhhHH
Q psy5876 76 IIKRFNS-PTFCQLRWRPRP-ASLLSKEQVDKIK 107 (143)
Q Consensus 76 ~l~~~~~-~~v~~l~wsP~~-~~l~s~s~d~~i~ 107 (143)
++.+++. ..++++.|+|++ +.++.|+.|+.|+
T Consensus 292 ~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~ 325 (503)
T KOG0282|consen 292 VLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIR 325 (503)
T ss_pred EEEEEecCCCceeeecCCCCCcEEEEecCCCcEE
Confidence 9998874 578899999999 7788898888876
No 54
>KOG0647|consensus
Probab=99.40 E-value=2e-12 Score=101.98 Aligned_cols=99 Identities=14% Similarity=0.270 Sum_probs=79.0
Q ss_pred CeEec-CCCEEEEEecCCCCeEEEEECCC-ceEEee---eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876 1 MKLRM-RGTHIVLAELRDTGSLEFVDTGD-FSVMNA---AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK 75 (143)
Q Consensus 1 i~~SP-dG~~las~~~~~dg~i~iWd~~~-~~~~~~---~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~ 75 (143)
|+||| ...++++++. ||+||+|+++. +..+-+ .+..++.+++|+-||..+++|+ .|+.+++||+...
T Consensus 33 l~FSP~~~~~~~A~SW--D~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~------~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSW--DGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG------CDKQAKLWDLASG 104 (347)
T ss_pred eEeccccCceEEeccc--CCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec------cCCceEEEEccCC
Confidence 58999 4555557775 89999999875 443322 1246899999999999999999 5999999999644
Q ss_pred EEEe--ccCCcEEEEEEeeCCC--eeeecCchhhHH
Q psy5876 76 IIKR--FNSPTFCQLRWRPRPA--SLLSKEQVDKIK 107 (143)
Q Consensus 76 ~l~~--~~~~~v~~l~wsP~~~--~l~s~s~d~~i~ 107 (143)
++.+ .|..+|..++|-+... .|+|||=|++||
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlK 140 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLK 140 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEeccccccee
Confidence 4443 4688999999988776 899999999998
No 55
>KOG0316|consensus
Probab=99.39 E-value=1.6e-12 Score=99.89 Aligned_cols=99 Identities=12% Similarity=0.215 Sum_probs=90.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l 77 (143)
+.|+-||+|.+++| .|.+|++|+...+.+++++. ...|.+++-+.|+..|++|+ .|+.+.+||+ +|+.+
T Consensus 23 vryN~dGnY~ltcG--sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~G------gDk~v~vwDV~TGkv~ 94 (307)
T KOG0316|consen 23 VRYNVDGNYCLTCG--SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCG------GDKAVQVWDVNTGKVD 94 (307)
T ss_pred EEEccCCCEEEEcC--CCceEEeecccccceeeeecCCCceeeeccccccccccccCC------CCceEEEEEcccCeee
Confidence 36889999999999 69999999999999998863 46899999999999999999 6999999999 59999
Q ss_pred Eecc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRFN--SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+++. ...|+.+.|+.....++|++.|.++|
T Consensus 95 Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r 126 (307)
T KOG0316|consen 95 RRFRGHLAQVNTVRFNEESSVVASGSFDSSVR 126 (307)
T ss_pred eecccccceeeEEEecCcceEEEeccccceeE
Confidence 9875 67899999999999999999999987
No 56
>KOG0284|consensus
Probab=99.38 E-value=2.6e-13 Score=110.24 Aligned_cols=99 Identities=15% Similarity=0.319 Sum_probs=82.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC--ceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD--FSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK 78 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~--~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~ 78 (143)
|.|.|+|+.|++|+ ..|.+.+|+..+ ++.+..-|...|.++.||++|.++++|. .++.|++|+..-.-++
T Consensus 102 v~WtPeGRRLltgs--~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD------~gG~iKyWqpnmnnVk 173 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGS--QSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGD------KGGMIKYWQPNMNNVK 173 (464)
T ss_pred EEEcCCCceeEeec--ccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcC------CCceEEecccchhhhH
Confidence 57999999999999 689999999754 3334333456899999999999999999 6999999999644333
Q ss_pred e--cc-CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 79 R--FN-SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 79 ~--~~-~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
. .+ ...|.+++|+|....++|+|+|++|+
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ik 205 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIK 205 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEE
Confidence 2 23 47899999999999999999999997
No 57
>KOG0295|consensus
Probab=99.36 E-value=2.7e-12 Score=103.16 Aligned_cols=98 Identities=15% Similarity=0.254 Sum_probs=82.3
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEee--eccCceEEEEECCCC---------------CEEEEeecCcceecC
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA--AEHHQATDVEWDPTG---------------RYVMSGVSLWKTKAD 64 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~--~~~~~v~~i~wsPdG---------------~~lat~s~~~~~~~D 64 (143)
+-+-||+.+|+++ .|.++++|-+.+.++... .+.++|-+++|.|.. ++++++| -|
T Consensus 242 ~v~~DGti~As~s--~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S------rD 313 (406)
T KOG0295|consen 242 RVNQDGTIIASCS--NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS------RD 313 (406)
T ss_pred EecCCeeEEEecC--CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec------cc
Confidence 4467999999999 589999999998855443 344689999998853 4666666 69
Q ss_pred CcEEEEee-cCcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 65 TGYWQWSF-QGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 65 ~~i~iW~~-~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
++|++||+ .|.+|.+. +.+.|.+++|+|.|++|+|+.+|+++|
T Consensus 314 ktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlr 359 (406)
T KOG0295|consen 314 KTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLR 359 (406)
T ss_pred ceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEE
Confidence 99999999 59999886 478999999999999999999999998
No 58
>KOG0772|consensus
Probab=99.36 E-value=7.2e-13 Score=110.43 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=73.5
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCce-----EEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS-----VMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ- 73 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~-----~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~- 73 (143)
+|+|||+.||+|. .||.|++||..+.. ++..-|. ..|++|+||+||++|++-+ .|+++++||+.
T Consensus 324 ~~nrdg~~iAagc--~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg------~D~tLKvWDLrq 395 (641)
T KOG0772|consen 324 AWNRDGKLIAAGC--LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG------FDDTLKVWDLRQ 395 (641)
T ss_pred ecCCCcchhhhcc--cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc------CCCceeeeeccc
Confidence 7999999999998 69999999976421 2222232 3799999999999999999 79999999994
Q ss_pred -CcEEEecc----CCcEEEEEEeeCCCeeeecCc
Q psy5876 74 -GKIIKRFN----SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 74 -g~~l~~~~----~~~v~~l~wsP~~~~l~s~s~ 102 (143)
.+.|+... .-.-.+++|||+.+.|+||+-
T Consensus 396 ~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 396 FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 45665432 234568899999999999863
No 59
>KOG1063|consensus
Probab=99.36 E-value=1.4e-12 Score=111.40 Aligned_cols=101 Identities=17% Similarity=0.303 Sum_probs=81.6
Q ss_pred CeEecCCCEEEEEecC---CCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876 1 MKLRMRGTHIVLAELR---DTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~---~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~ 75 (143)
++.||+|++||++... .-..|++|++.+...+... |.-.|+.++|||||+||+++| .|.++.+|..+..
T Consensus 531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs------RDRt~sl~~~~~~ 604 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVS------RDRTVSLYEVQED 604 (764)
T ss_pred EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEee------cCceEEeeeeecc
Confidence 3679999999998753 2357999999987666543 345799999999999999999 6999999998533
Q ss_pred EEE-------eccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 76 IIK-------RFNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 76 ~l~-------~~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
... +.|..-|++..|+|++..++|+|.|++++
T Consensus 605 ~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~Vk 643 (764)
T KOG1063|consen 605 IKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVK 643 (764)
T ss_pred cchhhhhccccccceEEEEcccCcccceeEEecCCceEE
Confidence 221 22456799999999999999999999985
No 60
>KOG0319|consensus
Probab=99.34 E-value=8.1e-12 Score=107.29 Aligned_cols=99 Identities=12% Similarity=0.160 Sum_probs=88.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
++.+|+.+.||+|+ .|.+.+||+++.+.+..++ |..++.++.|+|..+.+||+| .|.+|+||.++ ..++
T Consensus 469 Vaia~ndkLiAT~S--qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S------gD~TvKIW~is~fSCl 540 (775)
T KOG0319|consen 469 VAIAPNDKLIATGS--QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS------GDKTVKIWSISTFSCL 540 (775)
T ss_pred eEecCCCceEEecc--cccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc------CCceEEEEEeccceee
Confidence 57899999999999 6999999999988777665 345899999999999999999 69999999994 7788
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.++ |...|....|-.+|+.|+|++.|+.+|
T Consensus 541 kT~eGH~~aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 541 KTFEGHTSAVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred eeecCccceeEeeeeeeCCcEEEeccCCCcEE
Confidence 876 466899999999999999999999888
No 61
>KOG0275|consensus
Probab=99.34 E-value=2.8e-13 Score=108.20 Aligned_cols=111 Identities=11% Similarity=0.171 Sum_probs=96.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec---cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~---~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~ 76 (143)
|.||-|..+||+|+ .||.|++|.+.+|.|+..++ ..+|+++.||.|+..++++| .|.+++|--+ .|++
T Consensus 269 i~FSRDsEMlAsGs--qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s------fD~tvRiHGlKSGK~ 340 (508)
T KOG0275|consen 269 ISFSRDSEMLASGS--QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS------FDQTVRIHGLKSGKC 340 (508)
T ss_pred EeecccHHHhhccC--cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccc------ccceEEEeccccchh
Confidence 57999999999999 79999999999999998875 36899999999999999999 7999999988 5888
Q ss_pred EEecc--CCcEEEEEEeeCCCeeeecCchhhHH---hhhhhhchhccH
Q psy5876 77 IKRFN--SPTFCQLRWRPRPASLLSKEQVDKIK---KSLKKYTPAFEA 119 (143)
Q Consensus 77 l~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~---~~~~~~~~~~e~ 119 (143)
+..+. ..-|+...|.|+|..++|+|.|++|| -...++...|..
T Consensus 341 LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~ 388 (508)
T KOG0275|consen 341 LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP 388 (508)
T ss_pred HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC
Confidence 88764 66899999999999999999999998 333445555544
No 62
>KOG1274|consensus
Probab=99.32 E-value=6.1e-12 Score=110.02 Aligned_cols=98 Identities=17% Similarity=0.339 Sum_probs=78.5
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec----------cCceEEEEECCCCCEEEEeecCcceecCCcEEEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE----------HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW 70 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~----------~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW 70 (143)
|.|+|+|++||+++ -||+|+|||+.++.+..+.. ...++.++|+|+|..||... .|+.|+++
T Consensus 144 l~~~p~~~fLAvss--~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~------~d~~Vkvy 215 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSS--CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP------VDNTVKVY 215 (933)
T ss_pred eeEcCCCCEEEEEe--cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec------cCCeEEEE
Confidence 57899999999998 69999999999876654431 23478899999988777777 59999999
Q ss_pred eecC-cEEEec----cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 71 SFQG-KIIKRF----NSPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 71 ~~~g-~~l~~~----~~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
+..| ..++.+ +...+..+.|+|.|++|+++..++.|
T Consensus 216 ~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I 256 (933)
T KOG1274|consen 216 SRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQI 256 (933)
T ss_pred ccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcE
Confidence 8864 344443 23459999999999999999988876
No 63
>KOG2110|consensus
Probab=99.31 E-value=1.9e-11 Score=98.37 Aligned_cols=99 Identities=13% Similarity=0.267 Sum_probs=80.1
Q ss_pred ecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEec
Q psy5876 4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRF 80 (143)
Q Consensus 4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~ 80 (143)
++++.|||--+-...|.|.+||+.+.+.+.+.+ ...+-+++|||||.+|||+|. ...-|+++++ +|+.++++
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASe-----KGTVIRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASE-----KGTVIRVFSVPEGQKLYEF 212 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEecc-----CceEEEEEEcCCccEeeee
Confidence 444558887432146999999999988877764 357999999999999999994 3445789999 69999987
Q ss_pred c----CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 81 N----SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 81 ~----~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+ .-.|++++|+|+++.|.+.|..++|+
T Consensus 213 RRG~~~~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred eCCceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence 6 34799999999999999999888886
No 64
>KOG0306|consensus
Probab=99.30 E-value=1.2e-11 Score=106.71 Aligned_cols=99 Identities=12% Similarity=0.283 Sum_probs=87.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
+++||||++||++= .|+++++|=+++.+....+ |.-+|.++..|||++.++||| .|+.|+||-++ |.|-
T Consensus 514 v~~Spdgk~LaVsL--LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS------ADKnVKiWGLdFGDCH 585 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSL--LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS------ADKNVKIWGLDFGDCH 585 (888)
T ss_pred EEEcCCCcEEEEEe--ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc------CCCceEEeccccchhh
Confidence 47899999999997 6999999999998865543 345899999999999999999 79999999997 8776
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
..+ |.+.|-++.|-|+...+.|+|.|+.||
T Consensus 586 KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvK 617 (888)
T KOG0306|consen 586 KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVK 617 (888)
T ss_pred hhhhcccCceeEEEEcccceeEEEecCcceEE
Confidence 654 568999999999999999999999987
No 65
>KOG0302|consensus
Probab=99.30 E-value=2.1e-11 Score=98.59 Aligned_cols=98 Identities=13% Similarity=0.343 Sum_probs=74.8
Q ss_pred CeEecCCC-EEEEEecCCCCeEEEEECCCc---eEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--
Q psy5876 1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDF---SVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-- 73 (143)
Q Consensus 1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~---~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-- 73 (143)
++|||.-+ .||+|+ .||+|+|||+..+ .++.+- +...|+-|+|+-.-.+||+|+ .|++++|||+.
T Consensus 263 LqWSptE~~vfaScS--~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~------DdGt~~iwDLR~~ 334 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCS--CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGG------DDGTLSIWDLRQF 334 (440)
T ss_pred hccCCccCceEEeee--cCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecC------CCceEEEEEhhhc
Confidence 57999865 777788 7999999999876 244433 335799999999988999999 58999999993
Q ss_pred --CcEEE--eccCCcEEEEEEeeCCCe-eeecCchhhH
Q psy5876 74 --GKIIK--RFNSPTFCQLRWRPRPAS-LLSKEQVDKI 106 (143)
Q Consensus 74 --g~~l~--~~~~~~v~~l~wsP~~~~-l~s~s~d~~i 106 (143)
|+.+. +.|..+|+++.|+|.... ++.++.|..|
T Consensus 335 ~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 335 KSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred cCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence 55554 457899999999998753 4444555443
No 66
>KOG0288|consensus
Probab=99.28 E-value=2.1e-11 Score=99.32 Aligned_cols=98 Identities=27% Similarity=0.493 Sum_probs=80.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec------cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE------HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ- 73 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~------~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~- 73 (143)
+..|++|..|.+++ .|.++.+.|+.+.+....+. ....+.+.|||||+|+|+|| .|+.++||++.
T Consensus 347 l~ls~~g~~lLsss--RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS------~dgsv~iW~v~t 418 (459)
T KOG0288|consen 347 LDLSMDGLELLSSS--RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS------ADGSVYIWSVFT 418 (459)
T ss_pred EeeccCCeEEeeec--CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc------CCCcEEEEEccC
Confidence 35789999999998 68999999999877666553 23578899999999999999 69999999995
Q ss_pred CcEEEecc---CC-cEEEEEEeeCCCeeeecCchhhH
Q psy5876 74 GKIIKRFN---SP-TFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 74 g~~l~~~~---~~-~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
|++-.... .+ .|.+++|.|-|..|++++.++.+
T Consensus 419 gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 419 GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence 55544432 23 69999999999999999886543
No 67
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.28 E-value=4.9e-11 Score=91.47 Aligned_cols=101 Identities=11% Similarity=0.190 Sum_probs=73.7
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc---------CceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH---------HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS 71 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~---------~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~ 71 (143)
++|+|||++|++++. .+|.|.+||+.+++.+..... .....++|+|||++++.+.. .++.+.+||
T Consensus 162 ~~~s~dg~~l~~~~~-~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-----~~~~i~v~d 235 (300)
T TIGR03866 162 AEFTADGKELWVSSE-IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-----PANRVAVVD 235 (300)
T ss_pred EEECCCCCEEEEEcC-CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-----CCCeEEEEE
Confidence 369999999866543 479999999998876554321 12457899999998655542 366899999
Q ss_pred ec-CcEEEec-cCCcEEEEEEeeCCCeeeec-CchhhHH
Q psy5876 72 FQ-GKIIKRF-NSPTFCQLRWRPRPASLLSK-EQVDKIK 107 (143)
Q Consensus 72 ~~-g~~l~~~-~~~~v~~l~wsP~~~~l~s~-s~d~~i~ 107 (143)
.. ++.+... ....+.+++|+|+|+.|+++ +.+++|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 236 AKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred CCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEE
Confidence 95 5555443 35678999999999999876 4466553
No 68
>KOG0289|consensus
Probab=99.28 E-value=2.6e-11 Score=99.43 Aligned_cols=105 Identities=17% Similarity=0.272 Sum_probs=88.8
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc----CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH----HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI 76 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~----~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~ 76 (143)
...|.|.||++++ .||+.-|.|..++.++....+ -.+++++|+|||-.|++|. .|+.++|||+. +..
T Consensus 310 s~h~tgeYllsAs--~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt------~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 310 SLHPTGEYLLSAS--NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT------PDGVVKIWDLKSQTN 381 (506)
T ss_pred eeccCCcEEEEec--CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC------CCceEEEEEcCCccc
Confidence 4579999999999 699999999999988776533 2479999999999999999 69999999995 445
Q ss_pred EEecc--CCcEEEEEEeeCCCeeeecCchhhHH-------hhhhhhc
Q psy5876 77 IKRFN--SPTFCQLRWRPRPASLLSKEQVDKIK-------KSLKKYT 114 (143)
Q Consensus 77 l~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~-------~~~~~~~ 114 (143)
+.+++ ..+|..++|+-+|=+|+++++|..|+ +|+++|.
T Consensus 382 ~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 382 VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence 66664 67999999999999999999999766 5666654
No 69
>KOG2139|consensus
Probab=99.28 E-value=1.7e-11 Score=98.85 Aligned_cols=122 Identities=19% Similarity=0.282 Sum_probs=89.8
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEE--eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--E
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVM--NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--I 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~--~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--~ 76 (143)
++|.|||..|+++++ .|..|.|||.+++..+ ......+++-+.|||||.+|.+++ .|..+++|+.... .
T Consensus 201 mqwn~dgt~l~tAS~-gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt------~davfrlw~e~q~wt~ 273 (445)
T KOG2139|consen 201 MQWNEDGTILVTASF-GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT------CDAVFRLWQENQSWTK 273 (445)
T ss_pred EEEcCCCCEEeeccc-CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec------ccceeeeehhccccee
Confidence 579999999999999 4899999999987643 323446799999999999999999 5999999966322 1
Q ss_pred EE-eccCCcEEEEEEeeCCCeee-ecCchhhHHhhhhhhchhccHHhHHHHhhccccceeE
Q psy5876 77 IK-RFNSPTFCQLRWRPRPASLL-SKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKYADLL 135 (143)
Q Consensus 77 l~-~~~~~~v~~l~wsP~~~~l~-s~s~d~~i~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (143)
.. ......|....|+|.|..|+ +.+....+ |+-+|..++-.....+.-+..++
T Consensus 274 erw~lgsgrvqtacWspcGsfLLf~~sgsp~l------ysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 274 ERWILGSGRVQTACWSPCGSFLLFACSGSPRL------YSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred cceeccCCceeeeeecCCCCEEEEEEcCCceE------EEEeecCCCccccCcccceeeee
Confidence 11 12355899999999998776 55555555 77788777665543333333333
No 70
>KOG0276|consensus
Probab=99.27 E-value=8.2e-12 Score=106.08 Aligned_cols=99 Identities=14% Similarity=0.253 Sum_probs=84.0
Q ss_pred CeEecC-CCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCC--CEEEEeecCcceecCCcEEEEeecCc
Q psy5876 1 MKLRMR-GTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTG--RYVMSGVSLWKTKADTGYWQWSFQGK 75 (143)
Q Consensus 1 i~~SPd-G~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG--~~lat~s~~~~~~~D~~i~iW~~~g~ 75 (143)
|+|.|. -+.+|+++ .|++|++|.+.+..+..+++ ..+|+++.+-|-| -||+||+ .|.+++|||+|.+
T Consensus 146 v~fnPkD~ntFaS~s--LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga------DD~tiKvWDyQtk 217 (794)
T KOG0276|consen 146 VAFNPKDPNTFASAS--LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA------DDLTIKVWDYQTK 217 (794)
T ss_pred EEecCCCccceeeee--ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC------CCceEEEeecchH
Confidence 467775 45899999 69999999999877666654 3589999999866 4999999 5999999999755
Q ss_pred -EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 76 -IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 76 -~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
|+.++ |.+.|..+.|+|.-+.++|||+|+++|
T Consensus 218 ~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 218 SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVR 252 (794)
T ss_pred HHHHHhhcccccceEEEecCCCcEEEEecCCccEE
Confidence 66665 578999999999999999999999998
No 71
>KOG0296|consensus
Probab=99.26 E-value=5.9e-11 Score=95.47 Aligned_cols=98 Identities=12% Similarity=0.163 Sum_probs=83.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
++.+|+.+++|+|| .|..-.+|++.+++.+... |...|+++.||.||.|||||. .++.++||..+ |...
T Consensus 70 vsl~P~~~l~aTGG--gDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGd------msG~v~v~~~stg~~~ 141 (399)
T KOG0296|consen 70 VSLHPNNNLVATGG--GDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGD------MSGKVLVFKVSTGGEQ 141 (399)
T ss_pred EEeCCCCceEEecC--CCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecC------CCccEEEEEcccCceE
Confidence 46789999999998 6888999999998866554 345799999999999999999 79999999995 6655
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
... ..+.+--+.|+|.+..|+.|+.|+.+
T Consensus 142 ~~~~~e~~dieWl~WHp~a~illAG~~DGsv 172 (399)
T KOG0296|consen 142 WKLDQEVEDIEWLKWHPRAHILLAGSTDGSV 172 (399)
T ss_pred EEeecccCceEEEEecccccEEEeecCCCcE
Confidence 544 46677789999999999999999865
No 72
>KOG0278|consensus
Probab=99.26 E-value=3e-11 Score=93.67 Aligned_cols=96 Identities=16% Similarity=0.291 Sum_probs=75.2
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEe-
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKR- 79 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~- 79 (143)
.|+||++|.++- -+.|.|||..++.+++.+.. ..|.+.+.+|+...+++|+ .|..++-||+ +|..+-.
T Consensus 192 vs~dG~ilTia~---gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGg------ed~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 192 VSQDGRILTIAY---GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGG------EDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred eccCCCEEEEec---CceeEEeccccccceeeccCccccccccccCCCceEEecC------cceEEEEEeccCCceeeec
Confidence 577787777764 35677888887777776643 3577778888877777777 6778888999 4776644
Q ss_pred --ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 80 --FNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 80 --~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.+..+|.++.|+|+|...++||+|++||
T Consensus 263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred ccCCCCceEEEEECCCCceeeccCCCceEE
Confidence 3578999999999999999999999998
No 73
>KOG0285|consensus
Probab=99.25 E-value=2e-11 Score=98.31 Aligned_cols=99 Identities=13% Similarity=0.208 Sum_probs=87.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
+++-|-.+++++|+ .|+++.|||+.++++..+.. | ..|..+++|+---|+.+++ .|+.|++||+. .+.|
T Consensus 157 vavdP~n~wf~tgs--~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g------edk~VKCwDLe~nkvI 228 (460)
T KOG0285|consen 157 VAVDPGNEWFATGS--ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG------EDKQVKCWDLEYNKVI 228 (460)
T ss_pred EeeCCCceeEEecC--CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec------CCCeeEEEechhhhhH
Confidence 46779999999999 69999999999999887764 3 4689999999999999999 69999999995 6667
Q ss_pred Eecc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRFN--SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+..+ -..|++++.+|.-..|+|++.|.++|
T Consensus 229 R~YhGHlS~V~~L~lhPTldvl~t~grDst~R 260 (460)
T KOG0285|consen 229 RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIR 260 (460)
T ss_pred HHhccccceeEEEeccccceeEEecCCcceEE
Confidence 7665 56899999999999999999999887
No 74
>KOG0292|consensus
Probab=99.25 E-value=9.3e-12 Score=109.05 Aligned_cols=99 Identities=14% Similarity=0.242 Sum_probs=88.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
++|.|...+|+++-. .|.|++||...+.++.+|. | ++|..++|+|++-+|++|+ .|-.|++|++. -+++
T Consensus 15 lsFHP~rPwILtslH--sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGG------DDykIkVWnYk~rrcl 86 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLH--SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGG------DDYKIKVWNYKTRRCL 86 (1202)
T ss_pred eecCCCCCEEEEeec--CceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecC------CccEEEEEecccceeh
Confidence 589999999999863 7999999999888888873 3 6899999999999999999 58899999995 5677
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
++. |-+-|..+.|++.-++|+|+|+|++||
T Consensus 87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIr 118 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIR 118 (1202)
T ss_pred hhhccccceeEEeeccCCCceEEEccCCCeEE
Confidence 775 467899999999999999999999998
No 75
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.25 E-value=1.8e-10 Score=88.32 Aligned_cols=98 Identities=10% Similarity=0.153 Sum_probs=74.7
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK 78 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~ 78 (143)
++|+|||+.+++++. .++.|++||..+++.+..+. +..+..++|+|+|+++++++. .|+.+++||+. ++.+.
T Consensus 36 l~~~~dg~~l~~~~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-----~~~~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 36 ITLSKDGKLLYVCAS-DSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANE-----DDNLVTVIDIETRKVLA 109 (300)
T ss_pred eEECCCCCEEEEEEC-CCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcC-----CCCeEEEEECCCCeEEe
Confidence 479999998754432 58999999999887766543 345678999999998876653 47899999996 45555
Q ss_pred ecc-CCcEEEEEEeeCCCeeeecCchh
Q psy5876 79 RFN-SPTFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 79 ~~~-~~~v~~l~wsP~~~~l~s~s~d~ 104 (143)
... ...+..++|+|+|..+++++.+.
T Consensus 110 ~~~~~~~~~~~~~~~dg~~l~~~~~~~ 136 (300)
T TIGR03866 110 EIPVGVEPEGMAVSPDGKIVVNTSETT 136 (300)
T ss_pred EeeCCCCcceEEECCCCCEEEEEecCC
Confidence 543 34578899999999999887654
No 76
>KOG0315|consensus
Probab=99.24 E-value=2.3e-11 Score=94.18 Aligned_cols=98 Identities=15% Similarity=0.305 Sum_probs=82.8
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCce--EEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~ 76 (143)
+...||+++||+|+ ...||+||+++.. .+.+++ ...|+.+.|.-|||++.||| .|++++|||+..-.
T Consensus 46 LeiTpdk~~LAaa~---~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs------eDgt~kIWdlR~~~ 116 (311)
T KOG0315|consen 46 LEITPDKKDLAAAG---NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGS------EDGTVKIWDLRSLS 116 (311)
T ss_pred EEEcCCcchhhhcc---CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecC------CCceEEEEeccCcc
Confidence 35789999999998 5799999998754 466664 36899999999999999999 69999999997643
Q ss_pred EE-ec-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 77 IK-RF-NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 77 l~-~~-~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+. .+ +..+|+++..+|+...|+++-+.+.|+
T Consensus 117 ~qR~~~~~spVn~vvlhpnQteLis~dqsg~ir 149 (311)
T KOG0315|consen 117 CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIR 149 (311)
T ss_pred cchhccCCCCcceEEecCCcceEEeecCCCcEE
Confidence 33 33 368999999999999999999999887
No 77
>KOG0310|consensus
Probab=99.24 E-value=6.3e-11 Score=97.91 Aligned_cols=97 Identities=21% Similarity=0.282 Sum_probs=80.3
Q ss_pred eEecCCC-EEEEEecCCCCeEEEEECCCc-eEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 2 KLRMRGT-HIVLAELRDTGSLEFVDTGDF-SVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 2 ~~SPdG~-~las~~~~~dg~i~iWd~~~~-~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
+|+|-.. .+++||. ||+|++||+.+. ..+.++.| .+|.++.+=|.|..||+|+ .+.|++||+. |.++
T Consensus 160 ~~~~~~~hivvtGsY--Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-------Gn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 160 DISPANDHIVVTGSY--DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-------GNSVKVWDLTTGGQL 230 (487)
T ss_pred ccccCCCeEEEecCC--CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-------CCeEEEEEecCCcee
Confidence 5777755 7778885 999999998864 55666644 6899999999999999999 6899999996 6544
Q ss_pred -Ee-c-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 -KR-F-NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 -~~-~-~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.. . |...|+++.+..++.+|+|++-|+.+|
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK 263 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK 263 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceE
Confidence 33 2 567899999999999999999999886
No 78
>KOG0305|consensus
Probab=99.24 E-value=4.1e-11 Score=100.63 Aligned_cols=94 Identities=20% Similarity=0.315 Sum_probs=78.1
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee-cc-CceEEEEECC-CCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-EH-HQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSF-QGKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-~~-~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~-~g~~ 76 (143)
+.|+|||++||+|| .|+.+.|||....+++.++ +| ..|..++|+| ....||+|+.. .|+.|++||. +|..
T Consensus 307 Lkws~d~~~lASGg--nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs----~D~~i~fwn~~~g~~ 380 (484)
T KOG0305|consen 307 LKWSPDGNQLASGG--NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS----ADRCIKFWNTNTGAR 380 (484)
T ss_pred eEECCCCCeeccCC--CccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCC----cccEEEEEEcCCCcE
Confidence 57999999999999 5999999999766655554 33 5799999999 45588998864 7999999999 5888
Q ss_pred EEecc-CCcEEEEEEeeCCCeeeec
Q psy5876 77 IKRFN-SPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 77 l~~~~-~~~v~~l~wsP~~~~l~s~ 100 (143)
+.... ...|+++.|+|..+-|++.
T Consensus 381 i~~vdtgsQVcsL~Wsk~~kEi~st 405 (484)
T KOG0305|consen 381 IDSVDTGSQVCSLIWSKKYKELLST 405 (484)
T ss_pred ecccccCCceeeEEEcCCCCEEEEe
Confidence 88764 6799999999999777765
No 79
>KOG0265|consensus
Probab=99.23 E-value=4.6e-11 Score=94.21 Aligned_cols=98 Identities=16% Similarity=0.345 Sum_probs=81.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECC----CceEEeeec---c---CceEEEEECCCCCEEEEeecCcceecCCcEEEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTG----DFSVMNAAE---H---HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW 70 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~----~~~~~~~~~---~---~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW 70 (143)
|+.||+|.++.+-+ .|.++++||+. ...++..+. | .....++|||+++++..++ .|+.+++|
T Consensus 222 lsls~~gs~llsns--Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags------~dr~vyvw 293 (338)
T KOG0265|consen 222 LSLSRYGSFLLSNS--MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS------ADRFVYVW 293 (338)
T ss_pred EEeccCCCcccccc--ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccc------ccceEEEe
Confidence 46789999999988 58999999976 334455442 2 2467899999999999999 69999999
Q ss_pred eecC-cEEEecc--CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 71 SFQG-KIIKRFN--SPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 71 ~~~g-~~l~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
|..+ +.+++++ ...|+++.|+|..+.|++++-|++|
T Consensus 294 d~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 294 DTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred ecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence 9987 4777875 5679999999999999999999877
No 80
>KOG0305|consensus
Probab=99.23 E-value=9.3e-11 Score=98.46 Aligned_cols=103 Identities=9% Similarity=0.210 Sum_probs=83.8
Q ss_pred CeEecCCC-EEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
++|+|-.. .||+||=..|+.|+|||+.+++.+.... ...|+++.|+|..+-|+++... .++.|.||++- -+++
T Consensus 349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~----s~n~i~lw~~ps~~~~ 424 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGY----SENQITLWKYPSMKLV 424 (484)
T ss_pred eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCC----CCCcEEEEecccccee
Confidence 57888655 6666542279999999999999988764 4679999999999888887754 57899999994 4444
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
... |..+|..++|+|||..+++++.|+++|
T Consensus 425 ~~l~gH~~RVl~la~SPdg~~i~t~a~DETlr 456 (484)
T KOG0305|consen 425 AELLGHTSRVLYLALSPDGETIVTGAADETLR 456 (484)
T ss_pred eeecCCcceeEEEEECCCCCEEEEecccCcEE
Confidence 443 577899999999999999999999997
No 81
>KOG1009|consensus
Probab=99.23 E-value=2e-11 Score=99.20 Aligned_cols=96 Identities=18% Similarity=0.413 Sum_probs=80.1
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECC--------C--------ceEEe--eeccCceEEEEECCCCCEEEEeecCccee
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTG--------D--------FSVMN--AAEHHQATDVEWDPTGRYVMSGVSLWKTK 62 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~--------~--------~~~~~--~~~~~~v~~i~wsPdG~~lat~s~~~~~~ 62 (143)
+.|+|+|..||+|+ ++|.|.+|-.. + ..... ..+...+++++|+||+.++++++
T Consensus 71 vRf~p~gelLASg~--D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s------ 142 (434)
T KOG1009|consen 71 VRFSPDGELLASGG--DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS------ 142 (434)
T ss_pred EEEcCCcCeeeecC--CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee------
Confidence 47999999999999 78999999865 2 11111 23346799999999999999999
Q ss_pred cCCcEEEEee-cCcEEEec--cCCcEEEEEEeeCCCeeeecCchh
Q psy5876 63 ADTGYWQWSF-QGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 63 ~D~~i~iW~~-~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~ 104 (143)
.|+.+++||+ .|+++... |..-+..++|-|-++++++-+.|+
T Consensus 143 ~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 143 VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 7999999999 58877664 467899999999999999999887
No 82
>KOG0289|consensus
Probab=99.22 E-value=7e-11 Score=96.95 Aligned_cols=99 Identities=10% Similarity=0.109 Sum_probs=82.2
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
.+|.|||..+++|. .||.|+|||+.++..+..|+ ..+|..|+|+-+|-|||++. .|+.|++||+. -+..
T Consensus 353 ~~fHpDgLifgtgt--~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a------dd~~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 353 AAFHPDGLIFGTGT--PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA------DDGSVKLWDLRKLKNF 424 (506)
T ss_pred eeEcCCceEEeccC--CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe------cCCeEEEEEehhhccc
Confidence 36999999999998 69999999999888777774 35899999999999999999 57789999995 3333
Q ss_pred Eecc---CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRFN---SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~~---~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.++. ..++.++.|-+.|++|+.++.+=.|.
T Consensus 425 kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 425 KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred ceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence 3333 33699999999999999998776554
No 83
>KOG0292|consensus
Probab=99.21 E-value=7.2e-11 Score=103.58 Aligned_cols=98 Identities=13% Similarity=0.196 Sum_probs=82.6
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEee--eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc----
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK---- 75 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~---- 75 (143)
.|.|.=.+|++++ +|.+|+||+-.+++++.. .|.+.|.+..|+|....++++| .|.+|++||+.|=
T Consensus 100 ~FHheyPWIlSAS--DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaS------LDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 100 FFHHEYPWILSAS--DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSAS------LDQTVRVWDISGLRKKN 171 (1202)
T ss_pred eccCCCceEEEcc--CCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEec------ccceEEEEeecchhccC
Confidence 5788888999999 799999999998887765 4557899999999999999999 7999999998651
Q ss_pred ------------------------EEEe----ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 76 ------------------------IIKR----FNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 76 ------------------------~l~~----~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.+.+ -|..+|+-++|+|.-+.++||++|..||
T Consensus 172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVK 231 (1202)
T KOG0292|consen 172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 231 (1202)
T ss_pred CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceee
Confidence 1111 1345799999999999999999999987
No 84
>KOG1446|consensus
Probab=99.21 E-value=1.1e-10 Score=92.23 Aligned_cols=94 Identities=20% Similarity=0.374 Sum_probs=78.8
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccC-----ceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cC
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHH-----QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QG 74 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~-----~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g 74 (143)
|.|||||++|+.+. ..+.+.+-|.-+|..+.++... --.+.+|+|||+++++|+ .|+.+.+|++ +|
T Consensus 193 l~FS~dGK~iLlsT--~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs------~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 193 LEFSPDGKSILLST--NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS------DDGTIHVWNLETG 264 (311)
T ss_pred eEEcCCCCEEEEEe--CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEec------CCCcEEEEEcCCC
Confidence 57999999999998 5789999999988887776421 125889999999999999 5999999999 58
Q ss_pred cEEEecc---CCcEEEEEEeeCCCeeeecCc
Q psy5876 75 KIIKRFN---SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 75 ~~l~~~~---~~~v~~l~wsP~~~~l~s~s~ 102 (143)
+.+..+. ..++.++.|+|.-.+++|++.
T Consensus 265 ~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 265 KKVAVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred cEeeEecCCCCCCccccccCCceeeeeecCc
Confidence 8887754 457889999999999999863
No 85
>KOG1445|consensus
Probab=99.19 E-value=1.4e-11 Score=105.15 Aligned_cols=98 Identities=11% Similarity=0.232 Sum_probs=77.9
Q ss_pred eEec-CCCEEEEEecCCCCeEEEEECCC---------ceEEeeeccCceEEEEECCCC-CEEEEeecCcceecCCcEEEE
Q psy5876 2 KLRM-RGTHIVLAELRDTGSLEFVDTGD---------FSVMNAAEHHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQW 70 (143)
Q Consensus 2 ~~SP-dG~~las~~~~~dg~i~iWd~~~---------~~~~~~~~~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~iW 70 (143)
.|.| |...||+++ +||.|++|.+.. .+.+.+.|...|+++.|+|=. ..||+++ .|.+|++|
T Consensus 634 ~WdPFD~~rLAVa~--ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as------yd~Ti~lW 705 (1012)
T KOG1445|consen 634 HWDPFDDERLAVAT--DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS------YDSTIELW 705 (1012)
T ss_pred ccCCCChHHeeecc--cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh------ccceeeee
Confidence 4555 566899998 799999999763 334455556789999999954 4678888 59999999
Q ss_pred eec-CcEEEe--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 71 SFQ-GKIIKR--FNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 71 ~~~-g~~l~~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
|+. ++.-.+ -|.+.|.+++|+|+|+.++|.+.|++||
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 995 443323 3588999999999999999999999987
No 86
>KOG1274|consensus
Probab=99.19 E-value=1.1e-10 Score=102.20 Aligned_cols=88 Identities=13% Similarity=0.387 Sum_probs=70.1
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee----ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA----EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~----~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~ 76 (143)
++|+|+|..+|..+ .|+.|.+|+..+++....+ .+..++.++|||+|+|||+++ .|+.|-|||++.+.
T Consensus 194 ~aW~Pk~g~la~~~--~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~------~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 194 LAWHPKGGTLAVPP--VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST------LDGQILVWNVDTHE 265 (933)
T ss_pred eeecCCCCeEEeec--cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeec------cCCcEEEEecccch
Confidence 48999977776666 4899999999988766554 234589999999999999999 79999999997632
Q ss_pred EEeccCCcEEEEEEeeCCCee
Q psy5876 77 IKRFNSPTFCQLRWRPRPASL 97 (143)
Q Consensus 77 l~~~~~~~v~~l~wsP~~~~l 97 (143)
. +.....|++++|.|+...|
T Consensus 266 ~-~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 266 R-HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred h-ccccceeEEEecCCCCCee
Confidence 2 2235689999999997643
No 87
>KOG0641|consensus
Probab=99.18 E-value=2.1e-10 Score=88.21 Aligned_cols=97 Identities=27% Similarity=0.403 Sum_probs=80.4
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCceEEeee----c-----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA----E-----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~----~-----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
+|=+|-++|+|+ +|.+|+|||+.-..++.+. + ...|..++-.|.||.|++|- .|....+||+.
T Consensus 190 yswn~~m~~sgs--qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~------~dssc~lydir 261 (350)
T KOG0641|consen 190 YSWNGAMFASGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH------ADSSCMLYDIR 261 (350)
T ss_pred EEecCcEEEccC--CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc------CCCceEEEEee
Confidence 345678999998 7999999997754555442 1 24689999999999999998 69999999997
Q ss_pred -CcEEEecc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 74 -GKIIKRFN--SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 74 -g~~l~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
|+.++.++ ...|.++.|+|...+|++++.|-.||
T Consensus 262 g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ik 298 (350)
T KOG0641|consen 262 GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIK 298 (350)
T ss_pred CCceeeeeCCCccceeEEEeCCCceEEEEecccceEE
Confidence 55677764 67899999999999999999999887
No 88
>KOG0640|consensus
Probab=99.16 E-value=7.4e-11 Score=93.85 Aligned_cols=103 Identities=16% Similarity=0.311 Sum_probs=81.8
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCC-----------------c-eEEeee--ccCceEEEEECCCCCEEEEeecCcce
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGD-----------------F-SVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKT 61 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~-----------------~-~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~ 61 (143)
+|||||.++|+|+ .|..|+|.|++. + -.+.++ |..+|+++.|+|-...|++++
T Consensus 119 afs~DG~lvATGs--aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s----- 191 (430)
T KOG0640|consen 119 AFSPDGSLVATGS--ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS----- 191 (430)
T ss_pred eeCCCCcEEEccC--CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc-----
Confidence 6999999999999 699999999871 1 123333 235799999999999999999
Q ss_pred ecCCcEEEEeecCcEEEe----cc-CCcEEEEEEeeCCCeeeecCchhhHH-hhhhh
Q psy5876 62 KADTGYWQWSFQGKIIKR----FN-SPTFCQLRWRPRPASLLSKEQVDKIK-KSLKK 112 (143)
Q Consensus 62 ~~D~~i~iW~~~g~~l~~----~~-~~~v~~l~wsP~~~~l~s~s~d~~i~-~~~~~ 112 (143)
.|+++++||+...-..+ ++ ..+|.+++|+|.|..|+.|.+-.++| ++..+
T Consensus 192 -rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 192 -RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred -CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence 79999999996443322 22 56899999999999999999888887 44433
No 89
>KOG0296|consensus
Probab=99.15 E-value=2.4e-10 Score=91.98 Aligned_cols=106 Identities=14% Similarity=0.234 Sum_probs=87.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l 77 (143)
+.||.||.+||+|+ .+|.|++|+..++.....+ +...+.=+.|+|-++.|+.|+ .|+.+.+|.+.. ...
T Consensus 112 ~~FshdgtlLATGd--msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~------~DGsvWmw~ip~~~~~ 183 (399)
T KOG0296|consen 112 CSFSHDGTLLATGD--MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGS------TDGSVWMWQIPSQALC 183 (399)
T ss_pred EEEccCceEEEecC--CCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeec------CCCcEEEEECCCccee
Confidence 47999999999999 5899999999988766655 345677789999999999999 699999999954 443
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH-hhhhhhc
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK-KSLKKYT 114 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~-~~~~~~~ 114 (143)
+.+ +..++.+=.|.|+|++++++..|++|+ =|+++..
T Consensus 184 kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 184 KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence 333 567899999999999999999999988 3555543
No 90
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=4.7e-10 Score=93.09 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=66.5
Q ss_pred CeEecCCCEEEEEecC-CCCeEEEEECCCceE--EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEE--EeecCc
Q psy5876 1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSV--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ--WSFQGK 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i--W~~~g~ 75 (143)
.+|||||++||.++.+ .+..|.+||+.+++. +..+. .....++|||||++|+.++. .++...| ||..+.
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~~La~~~~-----~~g~~~Iy~~d~~~~ 282 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGSRLAFASS-----KDGVLNIYVMGANGG 282 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCCEEEEEEe-----cCCcEEEEEEECCCC
Confidence 4799999999988753 234799999987653 33332 23457899999999998763 3555555 466555
Q ss_pred EEEecc--CCcEEEEEEeeCCCeeeecC
Q psy5876 76 IIKRFN--SPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 76 ~l~~~~--~~~v~~l~wsP~~~~l~s~s 101 (143)
.+.... ...+....|+|||+.|+..+
T Consensus 283 ~~~~lt~~~~~~~~~~wSpDG~~i~f~s 310 (429)
T PRK01742 283 TPSQLTSGAGNNTEPSWSPDGQSILFTS 310 (429)
T ss_pred CeEeeccCCCCcCCEEECCCCCEEEEEE
Confidence 444432 34577899999999887654
No 91
>KOG1539|consensus
Probab=99.14 E-value=1.7e-10 Score=100.44 Aligned_cols=65 Identities=15% Similarity=0.320 Sum_probs=57.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF 72 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~ 72 (143)
++|||||++|++++ .|++|++||+.++.++..+. ..++++++|||+|.||||+.- ..++|++|.-
T Consensus 582 ~~FS~DgrWlisas--mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hv-----d~~gIylWsN 647 (910)
T KOG1539|consen 582 MTFSPDGRWLISAS--MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHV-----DQNGIYLWSN 647 (910)
T ss_pred eEeCCCCcEEEEee--cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEe-----cCceEEEEEc
Confidence 47999999999999 59999999999999988764 357999999999999999993 2389999974
No 92
>KOG1539|consensus
Probab=99.13 E-value=9e-11 Score=102.11 Aligned_cols=88 Identities=22% Similarity=0.349 Sum_probs=75.7
Q ss_pred EEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-CCc
Q psy5876 9 HIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-SPT 84 (143)
Q Consensus 9 ~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-~~~ 84 (143)
.+|++. .|-.|+++|+.+.+.+..+. ...+++++||||||+|++++ .|.+|++||+ +|.+|.... ..+
T Consensus 548 l~a~~~--ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas------mD~tIr~wDlpt~~lID~~~vd~~ 619 (910)
T KOG1539|consen 548 LLAIAL--DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS------MDSTIRTWDLPTGTLIDGLLVDSP 619 (910)
T ss_pred hhhhhc--CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee------cCCcEEEEeccCcceeeeEecCCc
Confidence 445544 47789999999988877763 45799999999999999999 7999999999 799998876 568
Q ss_pred EEEEEEeeCCCeeeecCchh
Q psy5876 85 FCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 85 v~~l~wsP~~~~l~s~s~d~ 104 (143)
..++.|+|+|..|+|...|+
T Consensus 620 ~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 620 CTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred ceeeEECCCCCEEEEEEecC
Confidence 89999999999999998774
No 93
>KOG1538|consensus
Probab=99.13 E-value=1.7e-10 Score=99.10 Aligned_cols=92 Identities=22% Similarity=0.323 Sum_probs=73.7
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-II 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l 77 (143)
++|.|||..|+.+. +..+.+||++.|.++.+.. ...|++++||.||+.+|+|+ .|+.+.+|+.+-+ .+
T Consensus 18 ~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~------aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGS------ADKSVIIWTSKLEGIL 88 (1081)
T ss_pred eEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCC------CceeEEEeccccccee
Confidence 58999999999885 6789999999998887763 35799999999999999999 6999999988633 33
Q ss_pred EeccCCcEEEEEEeeCCCeeeecC
Q psy5876 78 KRFNSPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 78 ~~~~~~~v~~l~wsP~~~~l~s~s 101 (143)
.-.|.+.|.+++|+|-.+.|+|++
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCs 112 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCS 112 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcc
Confidence 334566777777777777777764
No 94
>KOG0771|consensus
Probab=99.12 E-value=1.6e-10 Score=94.04 Aligned_cols=63 Identities=17% Similarity=0.385 Sum_probs=50.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF 72 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~ 72 (143)
++|++||..|++++ .||++|+|+..+...+... ++..|.++.|||||++||+-+. | ...||++
T Consensus 150 vaf~~~gs~latgg--~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~------d-~~~VW~~ 214 (398)
T KOG0771|consen 150 VAFNGDGSKLATGG--TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA------D-SARVWSV 214 (398)
T ss_pred EEEcCCCCEeeecc--ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC------C-ceEEEEe
Confidence 58999999999999 6999999996665544432 4578999999999999999984 3 4555555
No 95
>KOG0267|consensus
Probab=99.11 E-value=3.6e-11 Score=103.39 Aligned_cols=99 Identities=16% Similarity=0.309 Sum_probs=83.8
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
|.|+++...|++|+ .+|+|++||+++.+.+.++ +...+.++.|+|-|.|+|+|+ .|..+++||.. -.|.
T Consensus 76 l~f~~~E~Llaags--asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gS------tdtd~~iwD~Rk~Gc~ 147 (825)
T KOG0267|consen 76 LTFDTSERLLAAGS--ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGS------TDTDLKIWDIRKKGCS 147 (825)
T ss_pred eecCcchhhhcccc--cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccc------ccccceehhhhccCce
Confidence 46788888888888 6999999999988877665 335799999999999999999 58999999996 5576
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+.. +...|..+.|+|+|.+++++++|.+++
T Consensus 148 ~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 148 HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred eeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 655 355788999999999999999988877
No 96
>KOG2394|consensus
Probab=99.10 E-value=2.8e-10 Score=95.47 Aligned_cols=100 Identities=14% Similarity=0.253 Sum_probs=72.5
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECC--------------Cc---eEEe-----------ee--ccCceEEEEECCCCC
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTG--------------DF---SVMN-----------AA--EHHQATDVEWDPTGR 50 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~--------------~~---~~~~-----------~~--~~~~v~~i~wsPdG~ 50 (143)
|.|=|.+.-+.++.. .+|.++++|.+ .+ .+.. .. ....|...+|||||+
T Consensus 225 ikWvpg~~~~Fl~a~-~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~ 303 (636)
T KOG2394|consen 225 IKWVPGSDSLFLVAH-ASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK 303 (636)
T ss_pred EEEEeCCCceEEEEE-ecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc
Confidence 356666665544444 58999999754 01 1100 00 113678899999999
Q ss_pred EEEEeecCcceecCCcEEEEeecCcEEEe-cc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 51 YVMSGVSLWKTKADTGYWQWSFQGKIIKR-FN--SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 51 ~lat~s~~~~~~~D~~i~iW~~~g~~l~~-~~--~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
|||+.| .|+.++|||++.+.|.- .+ ...+.+++|||||++|++|++|..|.
T Consensus 304 ~LA~VS------qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVt 357 (636)
T KOG2394|consen 304 YLATVS------QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVT 357 (636)
T ss_pred eEEEEe------cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEE
Confidence 999999 59999999998765542 22 67899999999999999999998653
No 97
>KOG0267|consensus
Probab=99.09 E-value=6.1e-11 Score=101.97 Aligned_cols=103 Identities=19% Similarity=0.315 Sum_probs=86.8
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l 77 (143)
+.|+|=|.|.|+++ .|+.+.+||+...-+.+.+. | ..|..+.|+|||++++.++ .|+.++|||. .|+.+
T Consensus 118 v~f~P~~~~~a~gS--tdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~------ed~tvki~d~~agk~~ 189 (825)
T KOG0267|consen 118 VDFHPYGEFFASGS--TDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG------EDNTVKIWDLTAGKLS 189 (825)
T ss_pred eeeccceEEecccc--ccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC------Ccceeeeecccccccc
Confidence 47999999999988 69999999998655666653 3 3578899999999999999 5899999999 58888
Q ss_pred Eecc--CCcEEEEEEeeCCCeeeecCchhhHH-hhhh
Q psy5876 78 KRFN--SPTFCQLRWRPRPASLLSKEQVDKIK-KSLK 111 (143)
Q Consensus 78 ~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~-~~~~ 111 (143)
..+. ...+..+.|+|..-.|.+||.|++++ .+++
T Consensus 190 ~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 190 KEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred cccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 7664 56788899999999999999999987 4444
No 98
>KOG0268|consensus
Probab=99.09 E-value=1.2e-10 Score=93.91 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=80.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceE-E--eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV-M--NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~-~--~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~ 76 (143)
|+|+|.+--+++|+ .|..+..+|+...+. + ...+...|.++.|||.|+-|++|| -|++|+||.+. |+.
T Consensus 235 IswnPeafnF~~a~--ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs------yDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 235 ICWNPEAFNFVAAN--EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS------YDKSIRIFPVNHGHS 306 (433)
T ss_pred eecCccccceeecc--ccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc------ccceEEEeecCCCcc
Confidence 68999887788887 689999999876543 2 223345799999999999999999 69999999996 432
Q ss_pred --EE-eccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 77 --IK-RFNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 77 --l~-~~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
++ +..-..|.++.||-|.++++|||+|..||
T Consensus 307 RdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 307 RDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred hhhhhHhhhheeeEEEEeccccEEEecCCCccee
Confidence 22 22356899999999999999999999887
No 99
>KOG0303|consensus
Probab=99.08 E-value=4.7e-10 Score=91.33 Aligned_cols=99 Identities=11% Similarity=0.168 Sum_probs=77.8
Q ss_pred CeEecCCC-EEEEEecCCCCeEEEEECCCce-------EEe--eeccCceEEEEECCCCC-EEEEeecCcceecCCcEEE
Q psy5876 1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFS-------VMN--AAEHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQ 69 (143)
Q Consensus 1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~-------~~~--~~~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~i 69 (143)
+.|.|-.. .||+|+ .|.+|.||++...- .+. .+|...|..++|+|.-. .|++++ .|+.|.|
T Consensus 87 i~w~PfnD~vIASgS--eD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag------~Dn~v~i 158 (472)
T KOG0303|consen 87 IDWCPFNDCVIASGS--EDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG------SDNTVSI 158 (472)
T ss_pred cccCccCCceeecCC--CCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc------CCceEEE
Confidence 46888655 667777 69999999987422 122 23345799999999877 567777 5999999
Q ss_pred Eee-cCcEEEe-ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 70 WSF-QGKIIKR-FNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 70 W~~-~g~~l~~-~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
|++ +|.-+.+ .|.+.|++++|+-||..|+|.+.|++||
T Consensus 159 Wnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvR 198 (472)
T KOG0303|consen 159 WNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVR 198 (472)
T ss_pred EeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeE
Confidence 999 5875544 4788999999999999999999999987
No 100
>KOG0308|consensus
Probab=99.08 E-value=5.5e-10 Score=95.27 Aligned_cols=104 Identities=15% Similarity=0.221 Sum_probs=87.7
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIK 78 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~ 78 (143)
+-+|+|..|++|| ..+.++|||-.+.+.+.++ |...|..+.-++||+.++++| .|++|++||+ +-++++
T Consensus 178 A~N~t~t~ivsGg--tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s------SDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 178 AMNQTGTIIVSGG--TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS------SDGTIRLWDLGQQRCLA 249 (735)
T ss_pred ecCCcceEEEecC--cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC------CCceEEeeeccccceee
Confidence 4568898999998 5899999999988776654 346899999999999999999 5999999999 567887
Q ss_pred ec--cCCcEEEEEEeeCCCeeeecCchhhH-Hhhhhhh
Q psy5876 79 RF--NSPTFCQLRWRPRPASLLSKEQVDKI-KKSLKKY 113 (143)
Q Consensus 79 ~~--~~~~v~~l~wsP~~~~l~s~s~d~~i-~~~~~~~ 113 (143)
++ |...||++.-+|.=..+.+|+.|+.| +.+++++
T Consensus 250 T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 250 TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 75 57789999999999999999999865 4555554
No 101
>KOG0269|consensus
Probab=99.06 E-value=3.2e-10 Score=98.15 Aligned_cols=132 Identities=17% Similarity=0.291 Sum_probs=88.3
Q ss_pred CeEecC-CCEEEEEecCCCCeEEEEECCCce-EEee--eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876 1 MKLRMR-GTHIVLAELRDTGSLEFVDTGDFS-VMNA--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI 76 (143)
Q Consensus 1 i~~SPd-G~~las~~~~~dg~i~iWd~~~~~-~~~~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~ 76 (143)
|.|||. +.+++++. +.|.+++||+.... +..+ -|.++|.++.|+|++.+||||+ .|+.++||+.++..
T Consensus 182 V~fsp~~~~~F~s~~--dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG------RDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIH--DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG------RDKMVKIWDMTDSR 253 (839)
T ss_pred eeeccCCCceEEEec--CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC------CCccEEEEeccCCC
Confidence 468875 55666665 68999999988543 2222 2446899999999999999999 69999999998543
Q ss_pred ---EEecc-CCcEEEEEEeeCCCee-eecCc--hhhHH--hhhhhhc--hhccHHhHHHHhhccccceeEEEEee
Q psy5876 77 ---IKRFN-SPTFCQLRWRPRPASL-LSKEQ--VDKIK--KSLKKYT--PAFEAKDRQRMNKASKYADLLVVLSC 140 (143)
Q Consensus 77 ---l~~~~-~~~v~~l~wsP~~~~l-~s~s~--d~~i~--~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~ 140 (143)
++..+ ..+|..+.|+|.-+.. +|++. |-.|+ +--|-|. +.|++.+.-.-.-|=++.+-.+.+||
T Consensus 254 ~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~ 328 (839)
T KOG0269|consen 254 AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSC 328 (839)
T ss_pred ccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEee
Confidence 33333 6799999999998754 45543 33333 2222233 45555554444445555566666665
No 102
>KOG0285|consensus
Probab=99.06 E-value=6.6e-10 Score=89.72 Aligned_cols=99 Identities=10% Similarity=0.196 Sum_probs=87.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-II 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l 77 (143)
+++|+.-.||.+++ .|+.|+-||++..+.+..++. ..|.+++..|.-+.|+||+ .|..++|||+.-+ .+
T Consensus 199 vavS~rHpYlFs~g--edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g------rDst~RvWDiRtr~~V 270 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAG--EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG------RDSTIRVWDIRTRASV 270 (460)
T ss_pred eeecccCceEEEec--CCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecC------CcceEEEeeecccceE
Confidence 57899999999999 699999999998888876543 5799999999999999999 5999999999644 45
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+.+ |.++|..+.++|-.+.++|+|.|.+||
T Consensus 271 ~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 271 HVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred EEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 543 578999999999999999999999998
No 103
>KOG0306|consensus
Probab=99.05 E-value=4.8e-10 Score=96.98 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=85.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
+..|||++.|++|+ .|.+|++|.++=|.|-..+. | ..|.++.|-|+...+.||+ .|+.|+-||.. =.++
T Consensus 556 mDIS~DSklivTgS--ADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~g------KD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 556 MDISPDSKLIVTGS--ADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCG------KDGKVKQWDGEKFEEI 627 (888)
T ss_pred EeccCCcCeEEecc--CCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEec------CcceEEeechhhhhhh
Confidence 35799999999999 79999999999887766652 3 5799999999999999999 79999999975 3345
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
++. |...|++++-+|+|..++|+|.|..||
T Consensus 628 q~L~~H~~ev~cLav~~~G~~vvs~shD~sIR 659 (888)
T KOG0306|consen 628 QKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIR 659 (888)
T ss_pred eeeccchheeeeeEEcCCCCeEEeccCCceeE
Confidence 544 466899999999999999999999998
No 104
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=2.3e-09 Score=89.15 Aligned_cols=99 Identities=10% Similarity=0.167 Sum_probs=68.7
Q ss_pred CeEecCCCEEEEEecC-CCCeEEEEECCCceE--EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876 1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSV--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l 77 (143)
.+|||||+.||..+.. .+..|.+||+.+++. +..+. ..+..++|||||++|+...... .+..+++||+++..+
T Consensus 204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SPDG~~La~~~~~~---g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 204 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGSKLAFALSKT---GSLNLYVMDLASGQI 279 (429)
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-CCcCCeEECCCCCEEEEEEcCC---CCcEEEEEECCCCCE
Confidence 3799999999976542 245799999987753 33332 3456789999999998765310 123588899975544
Q ss_pred Eecc--CCcEEEEEEeeCCCeeeecCch
Q psy5876 78 KRFN--SPTFCQLRWRPRPASLLSKEQV 103 (143)
Q Consensus 78 ~~~~--~~~v~~l~wsP~~~~l~s~s~d 103 (143)
.... ...+....|+|||+.|+..+++
T Consensus 280 ~~lt~~~~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 280 RQVTDGRSNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred EEccCCCCCcCceEECCCCCEEEEEeCC
Confidence 4332 3467789999999999876654
No 105
>KOG2096|consensus
Probab=99.05 E-value=7.8e-10 Score=88.28 Aligned_cols=96 Identities=10% Similarity=0.155 Sum_probs=76.5
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEee----cCcE
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF----QGKI 76 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~----~g~~ 76 (143)
..-++++|++++ .|.+|.+|+.. |+.+..... ...+.++-|||||+||+++ .-.-+++|.+ +|..
T Consensus 195 iA~~~k~imsas--~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~g------FTpDVkVwE~~f~kdG~f 265 (420)
T KOG2096|consen 195 IAGNAKYIMSAS--LDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSG------FTPDVKVWEPIFTKDGTF 265 (420)
T ss_pred ecCCceEEEEec--CCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEec------CCCCceEEEEEeccCcch
Confidence 346789999999 58999999998 777766543 3567899999999999998 4556899987 3431
Q ss_pred --E---Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 77 --I---KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 77 --l---~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+ .++ |...|..++|+|+..+++|.|.|+++|
T Consensus 266 qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr 303 (420)
T KOG2096|consen 266 QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR 303 (420)
T ss_pred hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEE
Confidence 1 222 356899999999999999999999887
No 106
>KOG0643|consensus
Probab=99.04 E-value=7.5e-10 Score=86.50 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=83.7
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEe-e--eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN-A--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~-~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
-|+|-|++|++|. .||.|.+||+.+++.+. . .|...|+++.+|||..|++|+| .|++-++||+. =.++
T Consensus 154 ~Wg~l~~~ii~Gh--e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s------~Dttakl~D~~tl~v~ 225 (327)
T KOG0643|consen 154 LWGPLGETIIAGH--EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS------KDTTAKLVDVRTLEVL 225 (327)
T ss_pred eecccCCEEEEec--CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc------cCccceeeeccceeeE
Confidence 5999999999998 69999999999975443 3 2345899999999999999999 69999999996 4456
Q ss_pred Eecc-CCcEEEEEEeeCCCeeeec-CchhhHHhhhhhhchhccH
Q psy5876 78 KRFN-SPTFCQLRWRPRPASLLSK-EQVDKIKKSLKKYTPAFEA 119 (143)
Q Consensus 78 ~~~~-~~~v~~l~wsP~~~~l~s~-s~d~~i~~~~~~~~~~~e~ 119 (143)
.+.. ..+|++.+++|....++-+ +++..-.....+-..+||+
T Consensus 226 Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEA 269 (327)
T KOG0643|consen 226 KTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEA 269 (327)
T ss_pred EEeeecccccceecccccceEEecCCceeeeeeeecccccchhh
Confidence 6655 6799999999988776665 4444333333333344443
No 107
>KOG1007|consensus
Probab=99.04 E-value=6.5e-10 Score=87.70 Aligned_cols=97 Identities=14% Similarity=0.254 Sum_probs=76.7
Q ss_pred eEec--CCCEEEEEecCCCCeEEEEECCCceEEeee---ccCceEEEEECCCCCE-EEEeecCcceecCCcEEEEeec--
Q psy5876 2 KLRM--RGTHIVLAELRDTGSLEFVDTGDFSVMNAA---EHHQATDVEWDPTGRY-VMSGVSLWKTKADTGYWQWSFQ-- 73 (143)
Q Consensus 2 ~~SP--dG~~las~~~~~dg~i~iWd~~~~~~~~~~---~~~~v~~i~wsPdG~~-lat~s~~~~~~~D~~i~iW~~~-- 73 (143)
+||| ||+.+++.+ |+++++||+.+.++.... |...+.++.|+|+-++ ||||+ .|+.++|||..
T Consensus 177 ~WspHHdgnqv~tt~---d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g------DdgyvriWD~R~t 247 (370)
T KOG1007|consen 177 AWSPHHDGNQVATTS---DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG------DDGYVRIWDTRKT 247 (370)
T ss_pred ccCCCCccceEEEeC---CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC------CCccEEEEeccCC
Confidence 5888 899999986 899999999987765554 3357999999999985 56666 59999999995
Q ss_pred CcEEEecc--CCcEEEEEEeeCC-CeeeecCchhhHH
Q psy5876 74 GKIIKRFN--SPTFCQLRWRPRP-ASLLSKEQVDKIK 107 (143)
Q Consensus 74 g~~l~~~~--~~~v~~l~wsP~~-~~l~s~s~d~~i~ 107 (143)
...+...+ ...|+++.|+|-- +.|+|++-|..|-
T Consensus 248 k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~ 284 (370)
T KOG1007|consen 248 KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVN 284 (370)
T ss_pred CccccccCCCceEEEEEEecCccceEEEecCCCceeE
Confidence 33566654 5689999999975 6777888776543
No 108
>KOG0269|consensus
Probab=99.03 E-value=5.4e-10 Score=96.74 Aligned_cols=98 Identities=14% Similarity=0.226 Sum_probs=74.8
Q ss_pred eEecCCC-EEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCC-CCEEEEeecCcceecCCcEEEEeec--Cc
Q psy5876 2 KLRMRGT-HIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPT-GRYVMSGVSLWKTKADTGYWQWSFQ--GK 75 (143)
Q Consensus 2 ~~SPdG~-~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPd-G~~lat~s~~~~~~~D~~i~iW~~~--g~ 75 (143)
.|++--. +|++|+ +||+|++||+..-+-..++ ....|.++.|+|- +.+|+++. ..+.+.+||+. .+
T Consensus 140 dfh~tep~iliSGS--QDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~------dsG~lqlWDlRqp~r 211 (839)
T KOG0269|consen 140 DFHSTEPNILISGS--QDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH------DSGYLQLWDLRQPDR 211 (839)
T ss_pred eeccCCccEEEecC--CCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec------CCceEEEeeccCchh
Confidence 4554433 667777 7999999998865544444 2357999999995 66777777 35678899994 44
Q ss_pred EEEe--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 76 IIKR--FNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 76 ~l~~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+..+ .|..+|.++.|+|++.+|+|||.|++||
T Consensus 212 ~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vk 245 (839)
T KOG0269|consen 212 CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVK 245 (839)
T ss_pred HHHHhhcccCceEEEeecCCCceeeecCCCccEE
Confidence 4444 3678999999999999999999999987
No 109
>KOG0643|consensus
Probab=99.03 E-value=4.1e-09 Score=82.39 Aligned_cols=96 Identities=10% Similarity=0.137 Sum_probs=84.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l 77 (143)
|.++-+|.+|.+++ .|.+..+|=..+|+.+-++. ...|.+|.-+-+.++++||+ .|+++++||+ +|+++
T Consensus 16 iKyN~eGDLlFsca--KD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGS------AD~t~kLWDv~tGk~l 87 (327)
T KOG0643|consen 16 IKYNREGDLLFSCA--KDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGS------ADQTAKLWDVETGKQL 87 (327)
T ss_pred EEecCCCcEEEEec--CCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeecc------ccceeEEEEcCCCcEE
Confidence 46789999999999 69999999998999988764 35799999999999999999 7999999999 69999
Q ss_pred Eecc-CCcEEEEEEeeCCCeeeecCchh
Q psy5876 78 KRFN-SPTFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 78 ~~~~-~~~v~~l~wsP~~~~l~s~s~d~ 104 (143)
..+. ...|..+.|+++|..++-..++.
T Consensus 88 a~~k~~~~Vk~~~F~~~gn~~l~~tD~~ 115 (327)
T KOG0643|consen 88 ATWKTNSPVKRVDFSFGGNLILASTDKQ 115 (327)
T ss_pred EEeecCCeeEEEeeccCCcEEEEEehhh
Confidence 9987 66899999999999877665443
No 110
>KOG1034|consensus
Probab=99.02 E-value=1.3e-09 Score=87.06 Aligned_cols=92 Identities=12% Similarity=0.196 Sum_probs=77.7
Q ss_pred CEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCC-CEEEEeecCcceecCCcEEEEeec-CcEEEec---
Q psy5876 8 THIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF--- 80 (143)
Q Consensus 8 ~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~--- 80 (143)
-+||++| .-|.|++.|+.++++...+ |+..|+.|.+.|+. ++++++| .|..+++|+++ +.++.-+
T Consensus 106 p~la~~G--~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S------kD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 106 PFLAAGG--YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS------KDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred eeEEeec--ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec------CCceEEEEeccCCeEEEEeccc
Confidence 3788888 4799999999988776553 45679999999986 6888888 79999999996 5666543
Q ss_pred --cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 81 --NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 81 --~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
|.+.|.++.|+++|.+|+|++.|..++
T Consensus 178 egHrdeVLSvD~~~~gd~i~ScGmDhslk 206 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDGDRIASCGMDHSLK 206 (385)
T ss_pred ccccCcEEEEEEcCCCCeeeccCCcceEE
Confidence 467899999999999999999999887
No 111
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=3.4e-09 Score=87.95 Aligned_cols=99 Identities=10% Similarity=0.120 Sum_probs=68.3
Q ss_pred CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876 1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK 78 (143)
Q Consensus 1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~ 78 (143)
.+|||||+.|+..+.. .+..|.+||+.+++..... ....+...+|||||+.|+..... .....+++||..+..+.
T Consensus 207 p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~---~g~~~Iy~~d~~~~~~~ 283 (435)
T PRK05137 207 PRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQ---GGNTDIYTMDLRSGTTT 283 (435)
T ss_pred eEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEec---CCCceEEEEECCCCceE
Confidence 3799999999987642 3468999999887643222 12456788999999988755431 01234777788765554
Q ss_pred ecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876 79 RFN--SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 79 ~~~--~~~v~~l~wsP~~~~l~s~s~ 102 (143)
... ........|+|||+.|+..++
T Consensus 284 ~Lt~~~~~~~~~~~spDG~~i~f~s~ 309 (435)
T PRK05137 284 RLTDSPAIDTSPSYSPDGSQIVFESD 309 (435)
T ss_pred EccCCCCccCceeEcCCCCEEEEEEC
Confidence 443 334567899999999987654
No 112
>KOG0313|consensus
Probab=99.02 E-value=1.2e-09 Score=88.53 Aligned_cols=98 Identities=15% Similarity=0.324 Sum_probs=77.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCc--eEE-eee--ccCceEEEEECCCCCE-EEEeecCcceecCCcEEEEeecC
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF--SVM-NAA--EHHQATDVEWDPTGRY-VMSGVSLWKTKADTGYWQWSFQG 74 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~--~~~-~~~--~~~~v~~i~wsPdG~~-lat~s~~~~~~~D~~i~iW~~~g 74 (143)
|..+|..++||+|+ .|..+++||..++ ..+ +++ |...|+++.|+|...| |+++| .||++++||+..
T Consensus 306 i~~~~~~~Ll~~gs--sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S------~D~t~klWDvRS 377 (423)
T KOG0313|consen 306 ISYSPLSKLLASGS--SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS------YDNTVKLWDVRS 377 (423)
T ss_pred eecccccceeeecC--CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe------cCCeEEEEEecc
Confidence 45689999999998 6999999997653 332 222 3457999999999886 56666 699999999952
Q ss_pred -c-EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 75 -K-IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 75 -~-~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+ .|+.. +.+.|.++.|+ +|..|+||+.|.+||
T Consensus 378 ~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 378 TKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR 413 (423)
T ss_pred CCCcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence 2 56654 46789999999 788999999999886
No 113
>KOG0294|consensus
Probab=99.01 E-value=1.4e-09 Score=86.41 Aligned_cols=96 Identities=14% Similarity=0.197 Sum_probs=80.2
Q ss_pred ecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCC--EEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876 4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGR--YVMSGVSLWKTKADTGYWQWSFQ-GKIIK 78 (143)
Q Consensus 4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~--~lat~s~~~~~~~D~~i~iW~~~-g~~l~ 78 (143)
.=+|+|+|+|| .|-+|+|||+.+.+.+... |...|+.+.|.|+-. +|++|+ .|+.|.+|++. -.++.
T Consensus 50 AVs~~~~aSGs--sDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~s------dDG~i~iw~~~~W~~~~ 121 (362)
T KOG0294|consen 50 AVSGPYVASGS--SDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGS------DDGHIIIWRVGSWELLK 121 (362)
T ss_pred EecceeEeccC--CCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeec------CCCcEEEEEcCCeEEee
Confidence 35799999999 6899999999876554432 346799999999886 899999 69999999995 55666
Q ss_pred ec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 79 RF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 79 ~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.+ |...|++++.+|.|+.-+|.+.|+.+|
T Consensus 122 slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr 152 (362)
T KOG0294|consen 122 SLKAHKGQVTDLSIHPSGKLALSVGGDQVLR 152 (362)
T ss_pred eecccccccceeEecCCCceEEEEcCCceee
Confidence 54 466799999999999999999999887
No 114
>KOG2096|consensus
Probab=99.00 E-value=1.6e-09 Score=86.53 Aligned_cols=94 Identities=14% Similarity=0.207 Sum_probs=73.5
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECC-------CceEEeeec------cCceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTG-------DFSVMNAAE------HHQATDVEWDPTGRYVMSGVSLWKTKADTGY 67 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~-------~~~~~~~~~------~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i 67 (143)
++|||+.+.+++.+ .||+++|||++ ..+.+.++. ......++.||.|+-||.+. ...+
T Consensus 284 ~aFsn~S~r~vtvS--kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-------gs~l 354 (420)
T KOG2096|consen 284 AAFSNSSTRAVTVS--KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-------GSDL 354 (420)
T ss_pred eeeCCCcceeEEEe--cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-------CCce
Confidence 48999999999999 69999999987 223333331 12345899999999999887 5678
Q ss_pred EEEee-cCcEEEe---ccCCcEEEEEEeeCCCeeeecCch
Q psy5876 68 WQWSF-QGKIIKR---FNSPTFCQLRWRPRPASLLSKEQV 103 (143)
Q Consensus 68 ~iW~~-~g~~l~~---~~~~~v~~l~wsP~~~~l~s~s~d 103 (143)
+++.. +|+.... .+...|.+++|+|+|+.++|+++.
T Consensus 355 ~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 355 KVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred EEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce
Confidence 88887 5765443 457899999999999999999764
No 115
>KOG0316|consensus
Probab=99.00 E-value=2.7e-09 Score=82.31 Aligned_cols=104 Identities=11% Similarity=0.112 Sum_probs=78.8
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcc-------------------
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWK------------------- 60 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~------------------- 60 (143)
+-+.|...+++|| .|..+.+||+++|+.+.++. ...|+.+.|+.+..-+++||-+..
T Consensus 66 ~~s~Dnskf~s~G--gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde 143 (307)
T KOG0316|consen 66 ALSSDNSKFASCG--GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE 143 (307)
T ss_pred cccccccccccCC--CCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh
Confidence 3467788899988 69999999999999998874 357999999999999999983100
Q ss_pred -----------------eecCCcEEEEeec-CcEEEeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 61 -----------------TKADTGYWQWSFQ-GKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 61 -----------------~~~D~~i~iW~~~-g~~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
-+.|++++.||+. |++..-.-..+|++++|+|+++..+.++.+.++|
T Consensus 144 a~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlr 208 (307)
T KOG0316|consen 144 AKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLR 208 (307)
T ss_pred hcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceee
Confidence 0234444455542 3333333356899999999999999999998887
No 116
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=2e-09 Score=89.29 Aligned_cols=103 Identities=12% Similarity=0.168 Sum_probs=67.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEE--ECCCceEEee-eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--Cc
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFV--DTGDFSVMNA-AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GK 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iW--d~~~~~~~~~-~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~ 75 (143)
++|||||++|+.+.. .+|.+.|| |+++++.... .+...+...+|||||++|+.++. .++...||+++ +.
T Consensus 253 ~~wSPDG~~La~~~~-~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~-----~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 253 PAFSPDGSRLAFASS-KDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSD-----RSGSPQVYRMSASGG 326 (429)
T ss_pred eeECCCCCEEEEEEe-cCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEEC-----CCCCceEEEEECCCC
Confidence 479999999998753 36766655 6655543322 22345788999999999988774 35667788763 43
Q ss_pred EEEeccCCcEEEEEEeeCCCeeeecCchhhHHhhh
Q psy5876 76 IIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSL 110 (143)
Q Consensus 76 ~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~~~~ 110 (143)
......... +...|+|+|+.|+..+.+..++-++
T Consensus 327 ~~~~l~~~~-~~~~~SpDG~~ia~~~~~~i~~~Dl 360 (429)
T PRK01742 327 GASLVGGRG-YSAQISADGKTLVMINGDNVVKQDL 360 (429)
T ss_pred CeEEecCCC-CCccCCCCCCEEEEEcCCCEEEEEC
Confidence 332222222 5678999999998877665444333
No 117
>KOG0639|consensus
Probab=98.98 E-value=6.2e-10 Score=93.10 Aligned_cols=97 Identities=12% Similarity=0.223 Sum_probs=82.8
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l 77 (143)
++.|||.+...++. .||.|.|||+.+...+..+. ..++++|..|+||..|=||+ .|++++.||+ +|+++
T Consensus 515 La~spDakvcFscc--sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGG------lDntvRcWDlregrql 586 (705)
T KOG0639|consen 515 LAISPDAKVCFSCC--SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGG------LDNTVRCWDLREGRQL 586 (705)
T ss_pred hhcCCccceeeeec--cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCC------Cccceeehhhhhhhhh
Confidence 46799999888886 59999999999988887764 35799999999999999999 7999999999 68877
Q ss_pred Eecc-CCcEEEEEEeeCCCeeeecCchhh
Q psy5876 78 KRFN-SPTFCQLRWRPRPASLLSKEQVDK 105 (143)
Q Consensus 78 ~~~~-~~~v~~l~wsP~~~~l~s~s~d~~ 105 (143)
.+.. ...|.++...|.+.+|+-|=+...
T Consensus 587 qqhdF~SQIfSLg~cP~~dWlavGMens~ 615 (705)
T KOG0639|consen 587 QQHDFSSQIFSLGYCPTGDWLAVGMENSN 615 (705)
T ss_pred hhhhhhhhheecccCCCccceeeecccCc
Confidence 6654 678999999999999998755443
No 118
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=6.5e-09 Score=86.30 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=66.0
Q ss_pred CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEe--ecCcE
Q psy5876 1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS--FQGKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~--~~g~~ 76 (143)
.+|||||+.|+..+.. ....|.+||+.+++...... ...+...+|||||+.|+.... .++...||. .++..
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~-----~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALS-----RDGNSQIYTVNADGSG 275 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEc-----cCCCceEEEEECCCCC
Confidence 3799999999987642 23469999998876433221 235678999999999986543 355555554 45555
Q ss_pred EEecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876 77 IKRFN--SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 77 l~~~~--~~~v~~l~wsP~~~~l~s~s~ 102 (143)
+.... ........|+|||+.|+..++
T Consensus 276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~ 303 (427)
T PRK02889 276 LRRLTQSSGIDTEPFFSPDGRSIYFTSD 303 (427)
T ss_pred cEECCCCCCCCcCeEEcCCCCEEEEEec
Confidence 54432 234567889999999886554
No 119
>KOG0288|consensus
Probab=98.97 E-value=1.1e-09 Score=89.33 Aligned_cols=63 Identities=14% Similarity=0.263 Sum_probs=54.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--c--CceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--H--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS 71 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~ 71 (143)
+.|||+|.|+|+|+ .||.|.||++.++++-.... + ..|++++|+|.|.++++++ .+..+.+|.
T Consensus 393 vvfSpd~~YvaAGS--~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad------k~~~v~lW~ 459 (459)
T KOG0288|consen 393 VVFSPDGSYVAAGS--ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD------KQKAVTLWT 459 (459)
T ss_pred eEECCCCceeeecc--CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc------CCcceEecC
Confidence 46999999999999 69999999999998766542 2 3699999999999999999 688888883
No 120
>KOG0641|consensus
Probab=98.96 E-value=5.6e-09 Score=80.43 Aligned_cols=97 Identities=16% Similarity=0.249 Sum_probs=84.3
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR 79 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~ 79 (143)
+-.|.|+.||+|- .|....+||+..++.++.++ | ..|.++.|||...|++||| -|+.|++=|++|.+-++
T Consensus 238 ~vdpsgrll~sg~--~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s------yd~~ikltdlqgdla~e 309 (350)
T KOG0641|consen 238 AVDPSGRLLASGH--ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS------YDMKIKLTDLQGDLAHE 309 (350)
T ss_pred EECCCcceeeecc--CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec------ccceEEEeecccchhhc
Confidence 5579999999997 68999999999999888874 3 4799999999999999999 69999999999876544
Q ss_pred c-------cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 80 F-------NSPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 80 ~-------~~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
. +.+.+..+.|+|..-.++|.+.|+++
T Consensus 310 l~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~ 343 (350)
T KOG0641|consen 310 LPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTA 343 (350)
T ss_pred CceEEEEeccCceEEEEecCccceeeeccCcceE
Confidence 2 46788899999999999999988764
No 121
>KOG0264|consensus
Probab=98.96 E-value=2.6e-09 Score=87.58 Aligned_cols=100 Identities=13% Similarity=0.291 Sum_probs=73.0
Q ss_pred CeEecCCCE-EEEEecCCCCeEEEEECCCce-EEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--C
Q psy5876 1 MKLRMRGTH-IVLAELRDTGSLEFVDTGDFS-VMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--G 74 (143)
Q Consensus 1 i~~SPdG~~-las~~~~~dg~i~iWd~~~~~-~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g 74 (143)
++|+|-+.+ ||+|+ .|++|.+||+.+.. ++.+++. ..|..+.|||.-..++..|. .|+.+.+||+. |
T Consensus 278 ~~fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-----~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 278 VAFNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-----TDRRLNVWDLSRIG 350 (422)
T ss_pred EEeCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-----cCCcEEEEeccccc
Confidence 478887665 45566 69999999988754 4556542 47999999999886555543 69999999994 4
Q ss_pred cE-------------EEe--ccCCcEEEEEEeeCCCee-eecCchhhHH
Q psy5876 75 KI-------------IKR--FNSPTFCQLRWRPRPASL-LSKEQVDKIK 107 (143)
Q Consensus 75 ~~-------------l~~--~~~~~v~~l~wsP~~~~l-~s~s~d~~i~ 107 (143)
.. ++. -|...|.+++|+|.-+++ +|+++|..++
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 32 222 246689999999998765 5778886554
No 122
>KOG2106|consensus
Probab=98.94 E-value=1.5e-08 Score=84.90 Aligned_cols=96 Identities=19% Similarity=0.373 Sum_probs=69.8
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee--cCcEEE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--QGKIIK 78 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g~~l~ 78 (143)
.|.|.| .||.|. ..|..-+.|+++...+... +..+++.++|||||.+||.|| .|+.|+||-+ +|+...
T Consensus 414 ~fhpsg-~va~Gt--~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs------~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 414 DFHPSG-VVAVGT--ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS------HDNHIYIYRVSANGRKYS 484 (626)
T ss_pred eccCcc-eEEEee--ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec------CCCeEEEEEECCCCcEEE
Confidence 355555 555554 3455555555553333322 245799999999999999999 6999999988 366655
Q ss_pred ec---cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 79 RF---NSPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 79 ~~---~~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
+. +..+|.++.|++|++.|.+.+.|-+|
T Consensus 485 r~~k~~gs~ithLDwS~Ds~~~~~~S~d~ei 515 (626)
T KOG2106|consen 485 RVGKCSGSPITHLDWSSDSQFLVSNSGDYEI 515 (626)
T ss_pred EeeeecCceeEEeeecCCCceEEeccCceEE
Confidence 43 46799999999999999998877654
No 123
>KOG0299|consensus
Probab=98.93 E-value=3.1e-09 Score=87.66 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=81.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEE----ee----------------eccCceEEEEECCCCCEEEEeecCcc
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVM----NA----------------AEHHQATDVEWDPTGRYVMSGVSLWK 60 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~----~~----------------~~~~~v~~i~wsPdG~~lat~s~~~~ 60 (143)
+++|||++++.+++ .+|+|.=|++.+++.. .+ .|...+.+++-||||+|||||+
T Consensus 148 vals~d~~~~fsas--k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg---- 221 (479)
T KOG0299|consen 148 VALSPDDKRVFSAS--KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGG---- 221 (479)
T ss_pred EEeeccccceeecC--CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecC----
Confidence 46899999999999 6999999998876532 11 1113588999999999999999
Q ss_pred eecCCcEEEEeec-CcEEEe--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 61 TKADTGYWQWSFQ-GKIIKR--FNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 61 ~~~D~~i~iW~~~-g~~l~~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.|+.|.||+++ .+.++. -|.+.|.+++|+-....|.+++.|..++
T Consensus 222 --~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvk 269 (479)
T KOG0299|consen 222 --RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVK 269 (479)
T ss_pred --CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceE
Confidence 69999999995 555554 3578999999999999999999999887
No 124
>KOG4497|consensus
Probab=98.92 E-value=1.4e-08 Score=81.62 Aligned_cols=114 Identities=11% Similarity=0.145 Sum_probs=80.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEee-eccCceEEEEECCCCCEEEEeecC-------------c-------
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA-AEHHQATDVEWDPTGRYVMSGVSL-------------W------- 59 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~-~~~~~v~~i~wsPdG~~lat~s~~-------------~------- 59 (143)
++|||||+.|+.-+. .+-.|.+|.+.+.+.... .....+..++|+|||+|.|.++.- |
T Consensus 97 ~~WSPdgrhiL~tse-F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~ 175 (447)
T KOG4497|consen 97 ISWSPDGRHILLTSE-FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFK 175 (447)
T ss_pred eeECCCcceEeeeec-ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcC
Confidence 479999987766543 478999999998766543 234568999999999999988741 1
Q ss_pred ---------cee-cCCcEEEEeec-CcEEEecc-CCcEEEEEEeeCCCeeeecCchhhHH-------hhhhhhch
Q psy5876 60 ---------KTK-ADTGYWQWSFQ-GKIIKRFN-SPTFCQLRWRPRPASLLSKEQVDKIK-------KSLKKYTP 115 (143)
Q Consensus 60 ---------~~~-~D~~i~iW~~~-g~~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i~-------~~~~~~~~ 115 (143)
.|. .++.+.+||-- ...+...+ ..++..++|+|-++.|+-|+.|+.+| |.+.+|..
T Consensus 176 ~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflh 250 (447)
T KOG4497|consen 176 LDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLH 250 (447)
T ss_pred CCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhcc
Confidence 011 23345555541 12222223 46899999999999999999999998 55556553
No 125
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1.1e-08 Score=84.98 Aligned_cols=99 Identities=11% Similarity=0.150 Sum_probs=67.0
Q ss_pred CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876 1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK 78 (143)
Q Consensus 1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~ 78 (143)
.+|||||+.|+..+.. .+..|.+||+.+++...... .......+|||||++|+...+. ..+..+++||+.+..+.
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~---~g~~~Iy~~d~~~g~~~ 285 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSR---DGNPEIYVMDLGSRQLT 285 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeC---CCCceEEEEECCCCCeE
Confidence 3699999999987643 23479999998776432221 2345578999999988754321 02336889999655444
Q ss_pred ecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876 79 RFN--SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 79 ~~~--~~~v~~l~wsP~~~~l~s~s~ 102 (143)
... .......+|+|||+.|+..++
T Consensus 286 ~lt~~~~~~~~~~~spDG~~l~f~sd 311 (433)
T PRK04922 286 RLTNHFGIDTEPTWAPDGKSIYFTSD 311 (433)
T ss_pred ECccCCCCccceEECCCCCEEEEEEC
Confidence 432 234567899999999887654
No 126
>KOG1063|consensus
Probab=98.92 E-value=3.4e-09 Score=91.01 Aligned_cols=98 Identities=15% Similarity=0.245 Sum_probs=70.8
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceE-Eee---e-ccC-ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV-MNA---A-EHH-QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ- 73 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~-~~~---~-~~~-~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~- 73 (143)
|+|||||+||++.+ .|.++.+|....... -.. . .|. -|.++.|+||+.||||+| .|+.|++|...
T Consensus 578 l~FSpdg~~LLsvs--RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaS------RDK~VkVW~~~~ 649 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVS--RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATAS------RDKKVKVWEEPD 649 (764)
T ss_pred EEECCCCcEEEEee--cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEec------CCceEEEEeccC
Confidence 58999999999999 699999999653211 111 1 233 479999999999999999 69999999984
Q ss_pred C--cEEEec----cCCcEEEEEEeeCCCe----eeecC-chhhH
Q psy5876 74 G--KIIKRF----NSPTFCQLRWRPRPAS----LLSKE-QVDKI 106 (143)
Q Consensus 74 g--~~l~~~----~~~~v~~l~wsP~~~~----l~s~s-~d~~i 106 (143)
+ +.+.+. ....|..++|.|--.. +++.+ +-++|
T Consensus 650 ~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI 693 (764)
T KOG1063|consen 650 LRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEI 693 (764)
T ss_pred chhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEE
Confidence 4 344331 2568999999876543 55544 34444
No 127
>KOG1524|consensus
Probab=98.92 E-value=6e-09 Score=87.84 Aligned_cols=96 Identities=14% Similarity=0.268 Sum_probs=68.2
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCC------------------------------ceEE-eee----------cc-Cc
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGD------------------------------FSVM-NAA----------EH-HQ 39 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~------------------------------~~~~-~~~----------~~-~~ 39 (143)
.|||||.=|+++| .||.|++|.... +.+. +.+ .| +-
T Consensus 111 RW~~dGtgLlt~G--EDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGi 188 (737)
T KOG1524|consen 111 RWSPDGAGLLTAG--EDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGL 188 (737)
T ss_pred ccCCCCceeeeec--CCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcE
Confidence 5999999999999 699999999540 1111 000 13 24
Q ss_pred eEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec--c-----------------------------CCcEEEE
Q psy5876 40 ATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF--N-----------------------------SPTFCQL 88 (143)
Q Consensus 40 v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~--~-----------------------------~~~v~~l 88 (143)
|.++.|+|.+..|++|+ .|=.++|||.+|+.++.. + ...|..+
T Consensus 189 iL~~~W~~~s~lI~sgG------ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnl 262 (737)
T KOG1524|consen 189 VLSLSWSTQSNIIASGG------EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNL 262 (737)
T ss_pred EEEeecCccccceeecC------CceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEE
Confidence 78899999999999998 688899999998766431 1 1246777
Q ss_pred EEeeCCCeeeecCchhh
Q psy5876 89 RWRPRPASLLSKEQVDK 105 (143)
Q Consensus 89 ~wsP~~~~l~s~s~d~~ 105 (143)
+|||||..++.|...+.
T Consensus 263 sWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 263 SWSADGTQATCGTSTGQ 279 (737)
T ss_pred EEcCCCceeeccccCce
Confidence 78888877777655543
No 128
>KOG0646|consensus
Probab=98.92 E-value=4.3e-09 Score=86.87 Aligned_cols=98 Identities=16% Similarity=0.244 Sum_probs=80.6
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-----
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG----- 74 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g----- 74 (143)
+=+|+|.||+.|+ ..|.|++|.+.+|+++..+. ...|+++.|+-||.+|+||| .|+.|.+|++..
T Consensus 88 ~s~n~G~~l~ag~--i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs------kDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 88 ASSNLGYFLLAGT--ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS------KDGAVLVWLLTDLVSAD 159 (476)
T ss_pred ecCCCceEEEeec--ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC------CCccEEEEEEEeecccc
Confidence 4479999999997 57999999999999887663 35799999999999999999 799999998731
Q ss_pred -----cEEEec--cCCcEEEEEEeeCC--CeeeecCchhhHH
Q psy5876 75 -----KIIKRF--NSPTFCQLRWRPRP--ASLLSKEQVDKIK 107 (143)
Q Consensus 75 -----~~l~~~--~~~~v~~l~wsP~~--~~l~s~s~d~~i~ 107 (143)
..++.+ |.-.|.++...+.| .+|+|+|+|.++|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k 201 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK 201 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence 134444 35578888887764 6899999999986
No 129
>KOG0310|consensus
Probab=98.92 E-value=9.7e-09 Score=85.13 Aligned_cols=96 Identities=11% Similarity=0.111 Sum_probs=79.7
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCce-EEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS-VMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~-~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
.+=|.|..||+|| -+.|++||+-+|. .+... |+..|+++++..||+.|++++ .|+.+++||.+ =+.+
T Consensus 203 l~lpsgs~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s------LD~~VKVfd~t~~Kvv 273 (487)
T KOG0310|consen 203 LALPSGSLIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS------LDRHVKVFDTTNYKVV 273 (487)
T ss_pred EEcCCCCEEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc------cccceEEEEccceEEE
Confidence 4569999999997 4689999988654 44332 456899999999999999999 79999999975 4567
Q ss_pred Eecc-CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 78 KRFN-SPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 78 ~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
+.+. .++|.+++.+|+++.++-|-.++.+
T Consensus 274 ~s~~~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 274 HSWKYPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred EeeecccceeeEEecCCCceEEEeccccee
Confidence 7776 7899999999999999998777654
No 130
>KOG0281|consensus
Probab=98.91 E-value=9.2e-10 Score=88.79 Aligned_cols=90 Identities=18% Similarity=0.289 Sum_probs=74.8
Q ss_pred CCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEecc-
Q psy5876 6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRFN- 81 (143)
Q Consensus 6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~~- 81 (143)
|.+||++++ .|.+|++|++.+++.+.+.+. .+|-++.+ .||++++|| .|++|++||+. |.+++...
T Consensus 329 d~kyIVsAS--gDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGS------SDntIRlwdi~~G~cLRvLeG 398 (499)
T KOG0281|consen 329 DDKYIVSAS--GDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS------SDNTIRLWDIECGACLRVLEG 398 (499)
T ss_pred ccceEEEec--CCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecC------CCceEEEEeccccHHHHHHhc
Confidence 567999998 699999999999999988753 35666655 589999999 59999999995 88887653
Q ss_pred -CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 82 -SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 82 -~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
..-|.++.| |.+.++||+.|++||
T Consensus 399 HEeLvRciRF--d~krIVSGaYDGkik 423 (499)
T KOG0281|consen 399 HEELVRCIRF--DNKRIVSGAYDGKIK 423 (499)
T ss_pred hHHhhhheee--cCceeeeccccceEE
Confidence 556887766 678999999999988
No 131
>KOG0277|consensus
Probab=98.91 E-value=1.3e-08 Score=79.27 Aligned_cols=102 Identities=12% Similarity=0.225 Sum_probs=78.4
Q ss_pred EecC-CCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECC-CCCEEEEeecCcceecCCcEEEEeec--CcE
Q psy5876 3 LRMR-GTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSFQ--GKI 76 (143)
Q Consensus 3 ~SPd-G~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~~--g~~ 76 (143)
|++- ++.+++++. ||+|++|+.+...-+.++. | .-|+...||| .+..++++| .|+..++||+. |+.
T Consensus 112 wn~~~r~~~ltsSW--D~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S------gd~~l~lwdvr~~gk~ 183 (311)
T KOG0277|consen 112 WNTVRRRIFLTSSW--DGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS------GDGTLRLWDVRSPGKF 183 (311)
T ss_pred cccccceeEEeecc--CCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc------CCceEEEEEecCCCce
Confidence 4544 345566665 8999999999887777774 3 3589999999 466889999 69999999995 776
Q ss_pred EEe-ccCCcEEEEEEeeC-CCeeeecCchhhHH----hhhhh
Q psy5876 77 IKR-FNSPTFCQLRWRPR-PASLLSKEQVDKIK----KSLKK 112 (143)
Q Consensus 77 l~~-~~~~~v~~l~wsP~-~~~l~s~s~d~~i~----~~~~~ 112 (143)
+.. .|...+.++.|+-- ...|+|++-|..|| .|+|+
T Consensus 184 ~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 184 MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT 225 (311)
T ss_pred eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc
Confidence 553 35668999999655 46778999999998 66664
No 132
>KOG0313|consensus
Probab=98.90 E-value=3.5e-09 Score=85.79 Aligned_cols=98 Identities=14% Similarity=0.249 Sum_probs=80.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec---CcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ---GKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~---g~~ 76 (143)
|-|+| ...+.+++ -|.+|+.||+.++.++.+.. ....++++.+|..++||+|+ .|..+++||.. |..
T Consensus 266 V~w~d-~~v~yS~S--wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gs------sdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 266 VVWSD-ATVIYSVS--WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGS------SDRHIRLWDPRTGDGSV 336 (423)
T ss_pred EEEcC-CCceEeec--ccceEEEEEeecccceeeeecCcceeEeecccccceeeecC------CCCceeecCCCCCCCce
Confidence 35777 56777888 59999999999998877653 46799999999999999999 59999999993 444
Q ss_pred EEe---ccCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876 77 IKR---FNSPTFCQLRWRPRPA-SLLSKEQVDKIK 107 (143)
Q Consensus 77 l~~---~~~~~v~~l~wsP~~~-~l~s~s~d~~i~ 107 (143)
+.. -|.+.|.++.|+|-.. .|+|++.|+++|
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k 371 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK 371 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence 432 3577899999999885 677999999987
No 133
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=1.6e-08 Score=84.11 Aligned_cols=96 Identities=11% Similarity=0.163 Sum_probs=65.2
Q ss_pred CeEecCCCEEEEEecCCCC--eEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCC--cEEEEeecCc
Q psy5876 1 MKLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADT--GYWQWSFQGK 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~--~i~iW~~~g~ 75 (143)
+.|||||++|+.... .+| .|.+||+++++...... ...+...+|||||++|+..+. .++ .++++++.+.
T Consensus 248 ~~~SPDG~~La~~~~-~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~-----~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 248 PAFSPDGSKLAFALS-KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSD-----QAGRPQVYKVNINGG 321 (429)
T ss_pred eEECCCCCEEEEEEc-CCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeC-----CCCCceEEEEECCCC
Confidence 379999999987632 244 58889998776543322 245788999999999998884 223 3444466554
Q ss_pred EEEec--cCCcEEEEEEeeCCCeeeecCc
Q psy5876 76 IIKRF--NSPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 76 ~l~~~--~~~~v~~l~wsP~~~~l~s~s~ 102 (143)
..... .........|+|||+.|+..+.
T Consensus 322 ~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 322 APQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred CeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 33332 2334567899999999987654
No 134
>KOG0276|consensus
Probab=98.89 E-value=1.5e-08 Score=86.66 Aligned_cols=97 Identities=15% Similarity=0.215 Sum_probs=83.2
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--EEE
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--IIK 78 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--~l~ 78 (143)
|=+.-+++++|+ +|..|++++.+|++.+..|+. ..+.+|+-+|.--|++|+| .|-+|++|+.++. +.+
T Consensus 63 fiaRknWiv~Gs--DD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS------DDm~iKlW~we~~wa~~q 134 (794)
T KOG0276|consen 63 FIARKNWIVTGS--DDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS------DDMTIKLWDWENEWACEQ 134 (794)
T ss_pred eeeccceEEEec--CCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC------CccEEEEeeccCceeeee
Confidence 445667999998 799999999999999999864 3699999999999999999 5899999999876 333
Q ss_pred --eccCCcEEEEEEeeCC-CeeeecCchhhHH
Q psy5876 79 --RFNSPTFCQLRWRPRP-ASLLSKEQVDKIK 107 (143)
Q Consensus 79 --~~~~~~v~~l~wsP~~-~~l~s~s~d~~i~ 107 (143)
+-|..-|-+++|+|.. ...+|++-|++||
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 3356779999999976 6899999999998
No 135
>KOG0771|consensus
Probab=98.89 E-value=1.2e-08 Score=83.27 Aligned_cols=98 Identities=10% Similarity=0.136 Sum_probs=75.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceE----------------------------Eee--e---------------
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV----------------------------MNA--A--------------- 35 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~----------------------------~~~--~--------------- 35 (143)
+.|||||++||+-+ .| ..++|+++++.. +.. .
T Consensus 192 L~FS~dgk~lasig--~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~ 268 (398)
T KOG0771|consen 192 LDFSPDGKFLASIG--AD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG 268 (398)
T ss_pred ceeCCCCcEEEEec--CC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc
Confidence 57999999999988 46 899999886510 000 0
Q ss_pred -----------ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEEE---eccCCcEEEEEEeeCCCeeeec
Q psy5876 36 -----------EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KIIK---RFNSPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 36 -----------~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l~---~~~~~~v~~l~wsP~~~~l~s~ 100 (143)
.+..+++++-|+||+++|-|+ +|+.|-|++... ++++ +.|...|..+.|+|+...+++.
T Consensus 269 ~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT------~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 269 SNFLRLRKKIKRFKSISSLAVSDDGKFLALGT------MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred ccccchhhhhhccCcceeEEEcCCCcEEEEec------cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc
Confidence 023688999999999999999 799999999853 3333 2355689999999999999998
Q ss_pred CchhhHH
Q psy5876 101 EQVDKIK 107 (143)
Q Consensus 101 s~d~~i~ 107 (143)
+.+.+++
T Consensus 343 Ss~~~~~ 349 (398)
T KOG0771|consen 343 SSDNEAA 349 (398)
T ss_pred ccCCcee
Confidence 8776654
No 136
>KOG0308|consensus
Probab=98.89 E-value=6e-09 Score=89.09 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=83.7
Q ss_pred ecCCCEEEEEecCCCCeEEEEECCCc--eEEeee-----------ccCceEEEEECCCCCEEEEeecCcceecCCcEEEE
Q psy5876 4 RMRGTHIVLAELRDTGSLEFVDTGDF--SVMNAA-----------EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW 70 (143)
Q Consensus 4 SPdG~~las~~~~~dg~i~iWd~~~~--~~~~~~-----------~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW 70 (143)
.++...+|+|| .|+.|.+||++++ +.+.++ +..++++++-+|.|..|++|+ .++-+++|
T Consensus 127 ak~~~lvaSgG--LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGg------tek~lr~w 198 (735)
T KOG0308|consen 127 AKNNELVASGG--LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGG------TEKDLRLW 198 (735)
T ss_pred ccCceeEEecC--CCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecC------cccceEEe
Confidence 56888899999 5899999999976 233222 124689999999999999998 48899999
Q ss_pred ee-cCcEEEec--cCCcEEEEEEeeCCCeeeecCchhhHH-------hhhhhhchh
Q psy5876 71 SF-QGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK-------KSLKKYTPA 116 (143)
Q Consensus 71 ~~-~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~-------~~~~~~~~~ 116 (143)
|. .++.+.+. |.+.|..+..++||.+++|+|.|++|| +.+.+|..+
T Consensus 199 Dprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH 254 (735)
T KOG0308|consen 199 DPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH 254 (735)
T ss_pred ccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec
Confidence 99 46655543 588999999999999999999999998 555555444
No 137
>KOG0264|consensus
Probab=98.87 E-value=1.1e-08 Score=83.91 Aligned_cols=99 Identities=18% Similarity=0.291 Sum_probs=71.6
Q ss_pred CeEecCCC-EEEEEecCCCCeEEEEECCCc--eEEeee--ccCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeec-
Q psy5876 1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDF--SVMNAA--EHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQ- 73 (143)
Q Consensus 1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~--~~~~~~--~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~- 73 (143)
++|+|--. .+++++ .|+.+.|||+.+. +..... +...+.+++|+|-+. .||||| .|+++++||+.
T Consensus 233 V~~h~~h~~lF~sv~--dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S------~D~tV~LwDlRn 304 (422)
T KOG0264|consen 233 VAWHPLHEDLFGSVG--DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS------ADKTVALWDLRN 304 (422)
T ss_pred hhccccchhhheeec--CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEecc------CCCcEEEeechh
Confidence 35666544 566677 6999999999852 222222 236899999999666 567777 69999999995
Q ss_pred -CcEEEec--cCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876 74 -GKIIKRF--NSPTFCQLRWRPRPA-SLLSKEQVDKIK 107 (143)
Q Consensus 74 -g~~l~~~--~~~~v~~l~wsP~~~-~l~s~s~d~~i~ 107 (143)
.+.++.+ |.+.|..+.|+|+.. .|+|.+.|+.+.
T Consensus 305 L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 305 LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN 342 (422)
T ss_pred cccCceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence 4466654 478999999999986 555777776543
No 138
>KOG0294|consensus
Probab=98.86 E-value=2.2e-08 Score=79.75 Aligned_cols=95 Identities=18% Similarity=0.388 Sum_probs=74.0
Q ss_pred eEecCCC--EEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876 2 KLRMRGT--HIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKI 76 (143)
Q Consensus 2 ~~SPdG~--~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~ 76 (143)
.|.|+-. .|++|+ .||.|.+|++..++++.++. ...|+.++.+|.|+.-++.+ .|..+++|++ .|+.
T Consensus 90 ~F~~~~S~shLlS~s--dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg------~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 90 KFYPPLSKSHLLSGS--DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVG------GDQVLRTWNLVRGRV 161 (362)
T ss_pred EecCCcchhheeeec--CCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEc------CCceeeeehhhcCcc
Confidence 5667765 888888 79999999999999888763 34699999999999988888 5999999999 6775
Q ss_pred EEecc-CCcEEEEEEeeCCCeeeecCchh
Q psy5876 77 IKRFN-SPTFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 77 l~~~~-~~~v~~l~wsP~~~~l~s~s~d~ 104 (143)
-+..+ .+.-..+.|+|.|.+.+-.+.++
T Consensus 162 a~v~~L~~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 162 AFVLNLKNKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred ceeeccCCcceeeEEcCCCCEEEEEeccE
Confidence 44332 22333389999999777665553
No 139
>KOG0302|consensus
Probab=98.85 E-value=1.5e-08 Score=82.24 Aligned_cols=96 Identities=17% Similarity=0.329 Sum_probs=68.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCc---eEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF---SVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-- 73 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~---~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-- 73 (143)
|+|+-+-.+||+|+ +||+++|||+... +.+.++ |..+|++|.|+|...-++.++. .|+.|.|||+.
T Consensus 308 ISWnr~~~lLasG~--DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-----~D~QitiWDlsvE 380 (440)
T KOG0302|consen 308 ISWNRREPLLASGG--DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-----EDNQITIWDLSVE 380 (440)
T ss_pred EEccCCcceeeecC--CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-----CCCcEEEEEeecc
Confidence 57888888999998 7999999998853 344444 4568999999997654443332 59999999982
Q ss_pred -C----------c-------EEEecc--CCcEEEEEEeeCCC-eeeecCchh
Q psy5876 74 -G----------K-------IIKRFN--SPTFCQLRWRPRPA-SLLSKEQVD 104 (143)
Q Consensus 74 -g----------~-------~l~~~~--~~~v~~l~wsP~~~-~l~s~s~d~ 104 (143)
. . +++ .| ...|..++|+|+-+ .|+|.+.|+
T Consensus 381 ~D~ee~~~~a~~~L~dlPpQLLF-VHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 381 ADEEEIDQEAAEGLQDLPPQLLF-VHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred CChhhhccccccchhcCCceeEE-EecchhHhhhheeccCCCCeEEEecccc
Confidence 1 1 111 12 45688999999865 666776665
No 140
>KOG1446|consensus
Probab=98.85 E-value=4.6e-08 Score=77.49 Aligned_cols=101 Identities=14% Similarity=0.199 Sum_probs=86.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l 77 (143)
|.||++|.+|++++ .|.+++|||..+++++.+.+. .++..++|......++.++. +.|.+|+.-++ +.+.|
T Consensus 20 l~fs~~G~~litss--~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt----k~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 20 LDFSDDGLLLITSS--EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST----KEDDTIRYLSLHDNKYL 93 (311)
T ss_pred EEecCCCCEEEEec--CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC----CCCCceEEEEeecCceE
Confidence 57999999999988 578999999999998887754 47999999888777777774 25899999999 57778
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+-+ |...|.+++-+|-+...+|++.|++||
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvr 125 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVR 125 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEE
Confidence 765 577999999999999999999999987
No 141
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=3.5e-08 Score=81.94 Aligned_cols=98 Identities=13% Similarity=0.226 Sum_probs=66.3
Q ss_pred CeEecCCCEEEEEecCCCC--eEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l 77 (143)
.+|||||+.|+.... .+| .|.+||+.+++...-..+ ......+|||||++|+..+... ....++++|.+|...
T Consensus 251 ~~~SPDG~~la~~~~-~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~---g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 251 PRFSPDGRKVVMSLS-QGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS---GSPQLYVMNADGSNP 326 (435)
T ss_pred cEECCCCCEEEEEEe-cCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCC---CCCeEEEEECCCCCe
Confidence 379999998875432 344 477778887654332222 3456799999999999887410 134688888877654
Q ss_pred Eecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876 78 KRFN--SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 78 ~~~~--~~~v~~l~wsP~~~~l~s~s~ 102 (143)
.... ...+....|+|+|+.|+-.+.
T Consensus 327 ~~lt~~~~~~~~~~~SpdG~~ia~~~~ 353 (435)
T PRK05137 327 RRISFGGGRYSTPVWSPRGDLIAFTKQ 353 (435)
T ss_pred EEeecCCCcccCeEECCCCCEEEEEEc
Confidence 4432 345667899999999986543
No 142
>KOG2055|consensus
Probab=98.84 E-value=1.4e-08 Score=83.97 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=74.7
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-C--ceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-H--QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-- 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~--~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-- 75 (143)
++||.||+.|.+++ .+|.|.+||++...++.++.. . .-++++-|++|+|||+|| ..+-|.|||.+.-
T Consensus 350 ~~fsSdsk~l~~~~--~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS------~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 350 FTFSSDSKELLASG--GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS------DSGIVNIYDGNSCFA 421 (514)
T ss_pred EEEecCCcEEEEEc--CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc------CcceEEEeccchhhc
Confidence 47999999998887 589999999999888888743 2 347899999999999999 4677889996432
Q ss_pred -----EEEecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876 76 -----IIKRFN--SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 76 -----~l~~~~--~~~v~~l~wsP~~~~l~s~s~ 102 (143)
.+.... ...|.++.|+|+++.|+-+|.
T Consensus 422 s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 422 STNPKPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 233221 457999999999999887664
No 143
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.83 E-value=4.5e-08 Score=79.94 Aligned_cols=98 Identities=12% Similarity=0.177 Sum_probs=66.0
Q ss_pred eEecCCCEEEEEecC-CCCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876 2 KLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR 79 (143)
Q Consensus 2 ~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~ 79 (143)
+|||||++||.+... ....|.+||+.+++..... ....+..++|+|||+.|+..... ..+..+++|++.+.....
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~---~~~~~i~~~d~~~~~~~~ 272 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSK---DGNPDIYVMDLDGKQLTR 272 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECC---CCCccEEEEECCCCCEEE
Confidence 699999999987642 1257999999887543322 22346679999999988765421 023468888986554433
Q ss_pred cc--CCcEEEEEEeeCCCeeeecCc
Q psy5876 80 FN--SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 80 ~~--~~~v~~l~wsP~~~~l~s~s~ 102 (143)
.. ........|+|+|+.|+..++
T Consensus 273 l~~~~~~~~~~~~s~dg~~l~~~s~ 297 (417)
T TIGR02800 273 LTNGPGIDTEPSWSPDGKSIAFTSD 297 (417)
T ss_pred CCCCCCCCCCEEECCCCCEEEEEEC
Confidence 32 233456789999999886554
No 144
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=4.9e-08 Score=81.68 Aligned_cols=95 Identities=13% Similarity=0.174 Sum_probs=64.6
Q ss_pred eEecCCCEEEEEecC-CCCeEEEEECCCceE--EeeeccCceEEEEECCCCCEEEEeecCcceecCC--cEEEEeecCcE
Q psy5876 2 KLRMRGTHIVLAELR-DTGSLEFVDTGDFSV--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT--GYWQWSFQGKI 76 (143)
Q Consensus 2 ~~SPdG~~las~~~~-~dg~i~iWd~~~~~~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~--~i~iW~~~g~~ 76 (143)
.|||||++|+..+.. ....|.+||+.+++. +.... ......+|||||++|+.... .++ .++++|+++..
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~La~~~~-----~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKKLALVLS-----KDGQPEIYVVDIATKA 297 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCEEEEEEe-----CCCCeEEEEEECCCCC
Confidence 799999999987642 123688899887654 22222 23457899999999987653 233 47777886555
Q ss_pred EEecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876 77 IKRFN--SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 77 l~~~~--~~~v~~l~wsP~~~~l~s~s~ 102 (143)
+.... .......+|+|||+.|+..++
T Consensus 298 ~~~lt~~~~~~~~p~wSpDG~~I~f~s~ 325 (448)
T PRK04792 298 LTRITRHRAIDTEPSWHPDGKSLIFTSE 325 (448)
T ss_pred eEECccCCCCccceEECCCCCEEEEEEC
Confidence 44432 334667899999998876543
No 145
>KOG1445|consensus
Probab=98.82 E-value=7.6e-09 Score=88.72 Aligned_cols=104 Identities=11% Similarity=0.211 Sum_probs=77.8
Q ss_pred eEecC-CCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--E
Q psy5876 2 KLRMR-GTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--I 76 (143)
Q Consensus 2 ~~SPd-G~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--~ 76 (143)
.|.|= ...||+++. |-+|++||+.+++....+ |...|.+++||||||.+||.+ .|+++++|....+ .
T Consensus 684 RfHPLAadvLa~asy--d~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc------KDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 684 RFHPLAADVLAVASY--DSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC------KDGTLRVYEPRSREQP 755 (1012)
T ss_pred EecchhhhHhhhhhc--cceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeee------cCceEEEeCCCCCCCc
Confidence 45553 346777774 899999999987765544 446899999999999999999 7999999999533 4
Q ss_pred EEecc---CCcEEEEEEeeCCCeeeecCchhhHHhhhhhh
Q psy5876 77 IKRFN---SPTFCQLRWRPRPASLLSKEQVDKIKKSLKKY 113 (143)
Q Consensus 77 l~~~~---~~~v~~l~wsP~~~~l~s~s~d~~i~~~~~~~ 113 (143)
+++-. ..+--.+.|-=+|.+++..+.|+.-.+.+.-|
T Consensus 756 v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y 795 (1012)
T KOG1445|consen 756 VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMY 795 (1012)
T ss_pred cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhh
Confidence 55432 23445678888999999998887766655544
No 146
>KOG4497|consensus
Probab=98.82 E-value=6.5e-08 Score=77.78 Aligned_cols=81 Identities=10% Similarity=0.106 Sum_probs=60.6
Q ss_pred CCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE--eccCCcEEEEEEee
Q psy5876 17 DTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK--RFNSPTFCQLRWRP 92 (143)
Q Consensus 17 ~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~--~~~~~~v~~l~wsP 92 (143)
.++.|.+|++...+-..+. ...+++.++||||||+|...+. .|-.|.+|++..+... ...+..+..++|+|
T Consensus 69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tse-----F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~ 143 (447)
T KOG4497|consen 69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSE-----FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP 143 (447)
T ss_pred ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeec-----ceeEEEEEEeccceeEEecccccCceeEEECC
Confidence 3677788887655433333 2357999999999999999885 6888999999654333 23467889999999
Q ss_pred CCCeeeecCc
Q psy5876 93 RPASLLSKEQ 102 (143)
Q Consensus 93 ~~~~l~s~s~ 102 (143)
||+..+-.+.
T Consensus 144 dg~f~ai~sR 153 (447)
T KOG4497|consen 144 DGQFCAILSR 153 (447)
T ss_pred CCceeeeeec
Confidence 9998877654
No 147
>KOG0278|consensus
Probab=98.82 E-value=2.2e-08 Score=77.97 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=77.1
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEEEec
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KIIKRF 80 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l~~~ 80 (143)
|=-..+.|+++. .|++||+||..+++.+++++. .+|+++..|+||++|.++- .++|+.||... .+|...
T Consensus 151 wc~eD~~iLSSa--dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-------gssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 151 WCHEDKCILSSA--DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-------GSSVKFWDAKSFGLLKSY 221 (334)
T ss_pred EeccCceEEeec--cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-------CceeEEeccccccceeec
Confidence 333345667765 699999999999998888754 5799999999999998877 56899999963 355554
Q ss_pred c-CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 81 N-SPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 81 ~-~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
. +-.|.+.+.+|+-..++.|++|-.+
T Consensus 222 k~P~nV~SASL~P~k~~fVaGged~~~ 248 (334)
T KOG0278|consen 222 KMPCNVESASLHPKKEFFVAGGEDFKV 248 (334)
T ss_pred cCccccccccccCCCceEEecCcceEE
Confidence 4 6689999999999999999998765
No 148
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.81 E-value=5.7e-08 Score=77.36 Aligned_cols=100 Identities=8% Similarity=0.153 Sum_probs=71.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC-c---eEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-F---SVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-- 73 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~---~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-- 73 (143)
|+|+|+|++|.+++. .++.|.+|++++ + +.+...++ ..+..++++|||+++++++. .++.|.+||++
T Consensus 85 i~~~~~g~~l~v~~~-~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~ 158 (330)
T PRK11028 85 ISTDHQGRFLFSASY-NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL-----KEDRIRLFTLSDD 158 (330)
T ss_pred EEECCCCCEEEEEEc-CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC-----CCCEEEEEEECCC
Confidence 478999999999987 489999999863 2 22333322 45778899999999977774 57899999995
Q ss_pred CcEEE------ec-cCCcEEEEEEeeCCCeeeecCc-hhhH
Q psy5876 74 GKIIK------RF-NSPTFCQLRWRPRPASLLSKEQ-VDKI 106 (143)
Q Consensus 74 g~~l~------~~-~~~~v~~l~wsP~~~~l~s~s~-d~~i 106 (143)
|.+.. .. ......+++|+|+|+++....+ +.+|
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v 199 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSV 199 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEE
Confidence 33221 11 1335678999999999876654 4444
No 149
>KOG0639|consensus
Probab=98.81 E-value=9.6e-09 Score=86.09 Aligned_cols=98 Identities=11% Similarity=0.208 Sum_probs=79.4
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceE--Eeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-E
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSV--MNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-I 76 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~--~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~ 76 (143)
..+|||+.|++||. -.++.|||+.+... ..... ...|+.++.|||.+...++. .|+.|.|||+..+ +
T Consensus 472 kL~pdgrtLivGGe--astlsiWDLAapTprikaeltssapaCyALa~spDakvcFscc------sdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGE--ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCC------SDGNIAVWDLHNQTL 543 (705)
T ss_pred EecCCCceEEeccc--cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeec------cCCcEEEEEccccee
Confidence 46899999999994 68999999775432 22222 24689999999999877776 4999999999766 4
Q ss_pred EEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 77 IKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 77 l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
++.+ +.+.+.+|..++||..|-||+-|.++|
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvR 576 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVR 576 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCcccee
Confidence 5555 478999999999999999999999988
No 150
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=5.6e-08 Score=80.28 Aligned_cols=98 Identities=9% Similarity=0.138 Sum_probs=65.3
Q ss_pred eEecCCCEEEEEecC-CCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876 2 KLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR 79 (143)
Q Consensus 2 ~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~ 79 (143)
+|||||++|+..+.. ....|.+||+.+++...... ...+...+|||||++|+..... ..+..+++||+.+..+..
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~---~g~~~Iy~~d~~~~~~~~ 281 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSK---DGNPEIYVMDLASRQLSR 281 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEcc---CCCceEEEEECCCCCeEE
Confidence 799999999887642 12468899998775433221 2345578999999999855421 022367888987655444
Q ss_pred cc--CCcEEEEEEeeCCCeeeecCc
Q psy5876 80 FN--SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 80 ~~--~~~v~~l~wsP~~~~l~s~s~ 102 (143)
.. ........|+|||+.|+-.++
T Consensus 282 lt~~~~~~~~~~~spDg~~i~f~s~ 306 (430)
T PRK00178 282 VTNHPAIDTEPFWGKDGRTLYFTSD 306 (430)
T ss_pred cccCCCCcCCeEECCCCCEEEEEEC
Confidence 32 334567899999998875543
No 151
>KOG2055|consensus
Probab=98.81 E-value=2.1e-08 Score=82.94 Aligned_cols=96 Identities=9% Similarity=0.234 Sum_probs=80.1
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF 80 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~ 80 (143)
.||+|++||..| ..|.|.+--..|++.+.++.- ..+++++|+.||+.|..++ .++.|++||+. ..+++++
T Consensus 311 VShd~~fia~~G--~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~------~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 311 VSHDSNFIAIAG--NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASG------GTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred ecCCCCeEEEcc--cCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc------CCceEEEEecCCcceEEEE
Confidence 489999999999 589999999999988887753 5689999999999988887 58899999994 6678877
Q ss_pred c-CCcE--EEEEEeeCCCeeeecCchhhH
Q psy5876 81 N-SPTF--CQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 81 ~-~~~v--~~l~wsP~~~~l~s~s~d~~i 106 (143)
. .+.| .+++-+++|.+|++||+.+.|
T Consensus 383 ~D~G~v~gts~~~S~ng~ylA~GS~~GiV 411 (514)
T KOG2055|consen 383 VDDGSVHGTSLCISLNGSYLATGSDSGIV 411 (514)
T ss_pred eecCccceeeeeecCCCceEEeccCcceE
Confidence 5 3444 467778999999999987754
No 152
>KOG1009|consensus
Probab=98.80 E-value=9.9e-09 Score=83.70 Aligned_cols=98 Identities=14% Similarity=0.296 Sum_probs=73.6
Q ss_pred eEecCCC-EEEEEecCCCCeEEEEECCCce------EEe---e--eccCceEEEEECCCCCEEEEeecCcceecCCcEEE
Q psy5876 2 KLRMRGT-HIVLAELRDTGSLEFVDTGDFS------VMN---A--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ 69 (143)
Q Consensus 2 ~~SPdG~-~las~~~~~dg~i~iWd~~~~~------~~~---~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i 69 (143)
.|.+++. .||+|| .|..|+||-++..+ .+. . .|+..|+.|.|+|+|..||+|+ .++.+.+
T Consensus 20 dfq~n~~~~laT~G--~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~------D~g~v~l 91 (434)
T KOG1009|consen 20 DFQKNSLNKLATAG--GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG------DGGEVFL 91 (434)
T ss_pred EeccCcccceeccc--CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC------CCceEEE
Confidence 3556666 999999 69999999976321 111 1 2346799999999999999999 4788889
Q ss_pred Eeec--------C-----c---EEEe---ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 70 WSFQ--------G-----K---IIKR---FNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 70 W~~~--------g-----~---~l~~---~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
|-.. . + .+.+ .+...+++++|+|++..+++++.|..++
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~ 148 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVR 148 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEE
Confidence 9654 2 1 1222 1346899999999999999999988765
No 153
>KOG1963|consensus
Probab=98.80 E-value=2.9e-08 Score=86.77 Aligned_cols=99 Identities=12% Similarity=0.152 Sum_probs=74.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC--ce--EEee--eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-c
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD--FS--VMNA--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-Q 73 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~--~~--~~~~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~ 73 (143)
.++||+|+++|+|. .||.|.+|.--. .. .... .|+.+|++++||+||.||.+|+ .++-+.+|.. +
T Consensus 211 ~~~spn~~~~Aa~d--~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG------~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 211 VALSPNERYLAAGD--SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG------REGVLVLWQLET 282 (792)
T ss_pred EEeccccceEEEec--cCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc------cceEEEEEeecC
Confidence 36899999999998 689999998321 11 1122 3467999999999999999999 5778889999 4
Q ss_pred CcEEEecc-CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 74 GKIIKRFN-SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 74 g~~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
++...--+ ..+|.++.|+||+......-+|..|+
T Consensus 283 ~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~ 317 (792)
T KOG1963|consen 283 GKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIH 317 (792)
T ss_pred CCcccccccCCeeEEEEEcCCCCeEEEEecCceEE
Confidence 55222112 67899999999998777666665543
No 154
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.80 E-value=5.8e-08 Score=77.30 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=69.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC--c--eEEeeec---c-----CceEEEEECCCCCEEEEeecCcceecCCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD--F--SVMNAAE---H-----HQATDVEWDPTGRYVMSGVSLWKTKADTGYW 68 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~--~--~~~~~~~---~-----~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~ 68 (143)
+.|+|||++|.++.. .+++|.+||++. + +.+.+.. . .....+.++|||++++++.. .++.|.
T Consensus 180 ~~~~pdg~~lyv~~~-~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-----~~~~I~ 253 (330)
T PRK11028 180 MVFHPNQQYAYCVNE-LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-----TASLIS 253 (330)
T ss_pred EEECCCCCEEEEEec-CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-----CCCeEE
Confidence 479999999988875 489999999862 2 3333321 1 12346899999999999863 578999
Q ss_pred EEeec--CcEE---Eecc-CCcEEEEEEeeCCCeeeecCc-hhhH
Q psy5876 69 QWSFQ--GKII---KRFN-SPTFCQLRWRPRPASLLSKEQ-VDKI 106 (143)
Q Consensus 69 iW~~~--g~~l---~~~~-~~~v~~l~wsP~~~~l~s~s~-d~~i 106 (143)
+|+++ +..+ .... ......++++|+|+.|+++.+ +.+|
T Consensus 254 v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 254 VFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred EEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcE
Confidence 99983 4322 2222 224557899999999997664 4444
No 155
>KOG0277|consensus
Probab=98.79 E-value=2.4e-08 Score=77.74 Aligned_cols=100 Identities=17% Similarity=0.278 Sum_probs=72.7
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC-ceEEeee-cc-CceEEEEECCCCC-EEEEeecCcceecCCcEEEEeec-Cc
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FSVMNAA-EH-HQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQ-GK 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~~~~~~-~~-~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~-g~ 75 (143)
++|||+-.-++.+.. .||+++|||+.. -.++..+ +| ..|.++.|++--+ .++++| -|++||+|+.+ ++
T Consensus 66 V~Wse~~e~~~~~a~-GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS------WD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 66 VAWSENHENQVIAAS-GDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS------WDGTIKLWDPNRPN 138 (311)
T ss_pred eeecCCCcceEEEEe-cCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeec------cCCceEeecCCCCc
Confidence 578887654333322 499999999553 2345544 33 5899999999655 556665 69999999995 66
Q ss_pred EEEec--cCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876 76 IIKRF--NSPTFCQLRWRPRPA-SLLSKEQVDKIK 107 (143)
Q Consensus 76 ~l~~~--~~~~v~~l~wsP~~~-~l~s~s~d~~i~ 107 (143)
.+.++ +.+.|+...|+|.-+ .++++|.|++++
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~ 173 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLR 173 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEE
Confidence 66665 467899999999865 566889998775
No 156
>KOG1332|consensus
Probab=98.79 E-value=2.6e-08 Score=77.19 Aligned_cols=93 Identities=14% Similarity=0.242 Sum_probs=74.7
Q ss_pred CCEEEEEecCCCCeEEEEECCC-c--eEEeee--ccCceEEEEECC--CCCEEEEeecCcceecCCcEEEEeecCcEE--
Q psy5876 7 GTHIVLAELRDTGSLEFVDTGD-F--SVMNAA--EHHQATDVEWDP--TGRYVMSGVSLWKTKADTGYWQWSFQGKII-- 77 (143)
Q Consensus 7 G~~las~~~~~dg~i~iWd~~~-~--~~~~~~--~~~~v~~i~wsP--dG~~lat~s~~~~~~~D~~i~iW~~~g~~l-- 77 (143)
|++||+|+ .|++|+|+.+.. + +++.++ |..+|..++|.. -|..||+++ -|+.|.||.-++..-
T Consensus 23 gkrlATcs--SD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs------YDgkVIiWke~~g~w~k 94 (299)
T KOG1332|consen 23 GKRLATCS--SDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS------YDGKVIIWKEENGRWTK 94 (299)
T ss_pred cceeeeec--CCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee------cCceEEEEecCCCchhh
Confidence 88999999 699999999774 2 344444 446899999998 899999999 699999999864422
Q ss_pred -E--eccCCcEEEEEEeeCC--CeeeecCchhhHH
Q psy5876 78 -K--RFNSPTFCQLRWRPRP--ASLLSKEQVDKIK 107 (143)
Q Consensus 78 -~--~~~~~~v~~l~wsP~~--~~l~s~s~d~~i~ 107 (143)
+ ..|...|++++|.|.+ -.|++++.|+.|.
T Consensus 95 ~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs 129 (299)
T KOG1332|consen 95 AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS 129 (299)
T ss_pred hhhhhhhcccceeecccccccceEEEEeeCCCcEE
Confidence 2 2346789999999985 6888999999885
No 157
>KOG1408|consensus
Probab=98.78 E-value=1.7e-08 Score=87.59 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=75.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee-cc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE-
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-EH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII- 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l- 77 (143)
++|||+|+|+|+|--+....+++|++...-.+..+ +| ..+++++|||.++|+++.+. ..|--|.+|+-.-...
T Consensus 84 vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGs----QHDMIVnv~dWr~N~~~ 159 (1080)
T KOG1408|consen 84 VAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGS----QHDMIVNVNDWRVNSSG 159 (1080)
T ss_pred EEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeecc----ccceEEEhhhhhhcccc
Confidence 58999999999985334567999999876666665 33 57999999999999998874 2577778887643322
Q ss_pred Eec-cCCcEEEEEEeeCCCeeeecCch
Q psy5876 78 KRF-NSPTFCQLRWRPRPASLLSKEQV 103 (143)
Q Consensus 78 ~~~-~~~~v~~l~wsP~~~~l~s~s~d 103 (143)
..- -...|..++|+-||.+.+|.+..
T Consensus 160 asnkiss~Vsav~fsEdgSYfvT~gnr 186 (1080)
T KOG1408|consen 160 ASNKISSVVSAVAFSEDGSYFVTSGNR 186 (1080)
T ss_pred cccccceeEEEEEEccCCceeeeeeee
Confidence 111 24579999999999999998654
No 158
>KOG0270|consensus
Probab=98.78 E-value=7.9e-09 Score=84.98 Aligned_cols=98 Identities=19% Similarity=0.332 Sum_probs=73.2
Q ss_pred CCCEEEEEecCCCCeEEEEECC---CceE--------------E--e----eeccCceEEEEECCCCCE-EEEeecCcce
Q psy5876 6 RGTHIVLAELRDTGSLEFVDTG---DFSV--------------M--N----AAEHHQATDVEWDPTGRY-VMSGVSLWKT 61 (143)
Q Consensus 6 dG~~las~~~~~dg~i~iWd~~---~~~~--------------~--~----~~~~~~v~~i~wsPdG~~-lat~s~~~~~ 61 (143)
.|+|+|.|++ |..|+|||++ ...+ . . +.|...|..++|.-.-+. ||+||
T Consensus 191 ~gNyvAiGtm--dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgs----- 263 (463)
T KOG0270|consen 191 AGNYVAIGTM--DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGS----- 263 (463)
T ss_pred CcceEEEecc--CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecC-----
Confidence 4789999995 7899999976 1000 0 0 012234678899988885 45666
Q ss_pred ecCCcEEEEee-cCcEEEec--cCCcEEEEEEeeCC-CeeeecCchhhHH-hhhh
Q psy5876 62 KADTGYWQWSF-QGKIIKRF--NSPTFCQLRWRPRP-ASLLSKEQVDKIK-KSLK 111 (143)
Q Consensus 62 ~~D~~i~iW~~-~g~~l~~~--~~~~v~~l~wsP~~-~~l~s~s~d~~i~-~~~~ 111 (143)
.|++|++||+ .|++-... +...|.++.|+|.. +.|++|+.|++++ +++|
T Consensus 264 -aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 264 -ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred -CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 7999999999 58876654 47799999999985 6889999999887 5555
No 159
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=5.1e-08 Score=80.95 Aligned_cols=99 Identities=9% Similarity=0.038 Sum_probs=64.5
Q ss_pred eEecCCCEEEEEecCCCCeEEEEEC--CCceEE-eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDT--GDFSVM-NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK 78 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~--~~~~~~-~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~ 78 (143)
.|||||++|+..+. .+|...||.+ ++++.. .+++.......+|||||++|+..+... .+..+.+||+.+....
T Consensus 290 ~wSpDG~~l~f~s~-~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~---g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 290 FFSPDGRSIYFTSD-RGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG---GAFKLYVQDLATGQVT 365 (427)
T ss_pred EEcCCCCEEEEEec-CCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC---CcEEEEEEECCCCCeE
Confidence 69999999987653 3466677764 444321 123333455689999999999877310 1225889999644333
Q ss_pred ec-cCCcEEEEEEeeCCCeeeecCchh
Q psy5876 79 RF-NSPTFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 79 ~~-~~~~v~~l~wsP~~~~l~s~s~d~ 104 (143)
.. ........+|+|||+.|+..++++
T Consensus 366 ~lt~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 366 ALTDTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred EccCCCCccCceECCCCCEEEEEEecC
Confidence 32 223346789999999999877654
No 160
>KOG0300|consensus
Probab=98.77 E-value=2.2e-08 Score=80.24 Aligned_cols=105 Identities=17% Similarity=0.262 Sum_probs=84.4
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc----E
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK----I 76 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~----~ 76 (143)
|=.-|+.++++++ |.+..+||+++++++..+ |....+.++=+|.-|+++|+| .|.++++||+... -
T Consensus 280 WL~gg~Q~vTaSW--DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsS------rDtTFRLWDFReaI~sV~ 351 (481)
T KOG0300|consen 280 WLAGGQQMVTASW--DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSS------RDTTFRLWDFREAIQSVA 351 (481)
T ss_pred hhcCcceeeeeec--cccceeeeeccCceeccccCcchhccccccCCcceEEEEec------cCceeEeccchhhcceee
Confidence 4456889999996 899999999999988765 345799999999999999999 6999999999622 2
Q ss_pred EEeccCCcEEEEEEeeCCCeeeecCchhhHH----hhhhhhchh
Q psy5876 77 IKRFNSPTFCQLRWRPRPASLLSKEQVDKIK----KSLKKYTPA 116 (143)
Q Consensus 77 l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~----~~~~~~~~~ 116 (143)
+++-|.+.|.+..|.-+. .++|+++|.+|| +|.+.-.+.
T Consensus 352 VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplAT 394 (481)
T KOG0300|consen 352 VFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLAT 394 (481)
T ss_pred eecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCccee
Confidence 344567899999999655 599999999998 555544433
No 161
>KOG2048|consensus
Probab=98.77 E-value=6.4e-08 Score=82.98 Aligned_cols=98 Identities=14% Similarity=0.209 Sum_probs=77.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
++|++.| +|.+.+ .+|.|..||+.+++++...+ ...+.+++-+|.+..++.|+ .|+-++.++.. +++.
T Consensus 75 L~W~e~~-RLFS~g--~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc------ddGvl~~~s~~p~~I~ 145 (691)
T KOG2048|consen 75 LAWAEGG-RLFSSG--LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGC------DDGVLYDFSIGPDKIT 145 (691)
T ss_pred EEEccCC-eEEeec--CCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeec------CCceEEEEecCCceEE
Confidence 5899655 555666 48999999999999888765 35799999999999999998 46655555553 4454
Q ss_pred Eec----cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF----NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~----~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
++. +..+|.+++|+|++..|++|+.|+-||
T Consensus 146 ~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred EEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 442 257999999999999999999999776
No 162
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=9.6e-08 Score=79.35 Aligned_cols=95 Identities=15% Similarity=0.243 Sum_probs=62.7
Q ss_pred CeEecCCCEEEEEecCCCC--eEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCC--cEEEEeecCc
Q psy5876 1 MKLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADT--GYWQWSFQGK 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~--~i~iW~~~g~ 75 (143)
.+|||||+.|+.... .+| .|.+||+.+++......+ ......+|||||++|+..+. .++ .++++++.+.
T Consensus 253 ~~~SpDG~~l~~~~s-~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd-----~~g~~~iy~~dl~~g 326 (433)
T PRK04922 253 PSFSPDGRRLALTLS-RDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSD-----RGGRPQIYRVAASGG 326 (433)
T ss_pred ceECCCCCEEEEEEe-CCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEEC-----CCCCceEEEEECCCC
Confidence 379999998875432 234 699999988765432222 23567899999999998874 233 3566666543
Q ss_pred EEEe--ccCCcEEEEEEeeCCCeeeecC
Q psy5876 76 IIKR--FNSPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 76 ~l~~--~~~~~v~~l~wsP~~~~l~s~s 101 (143)
.... .........+|+|+|+.|+-.+
T Consensus 327 ~~~~lt~~g~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 327 SAERLTFQGNYNARASVSPDGKKIAMVH 354 (433)
T ss_pred CeEEeecCCCCccCEEECCCCCEEEEEE
Confidence 3332 2233344689999999988644
No 163
>KOG0274|consensus
Probab=98.77 E-value=7.3e-08 Score=82.54 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=74.8
Q ss_pred CCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec--cC
Q psy5876 6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF--NS 82 (143)
Q Consensus 6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~--~~ 82 (143)
-+.+|++|+ .|.++++||..+++++..+..+.-+..+.+-++-++++|| .|++|++|+++ |.+++.. +.
T Consensus 260 ~~~~lvsgS--~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs------~D~tVkVW~v~n~~~l~l~~~h~ 331 (537)
T KOG0274|consen 260 GGDKLVSGS--TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGS------RDNTVKVWDVTNGACLNLLRGHT 331 (537)
T ss_pred CCCEEEEEe--cCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeecc------CCceEEEEeccCcceEEEecccc
Confidence 377899998 6999999999999999988644433344455666788888 79999999996 7777754 57
Q ss_pred CcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 83 PTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 83 ~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
..|+++... +..+++++.|++|+
T Consensus 332 ~~V~~v~~~--~~~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 332 GPVNCVQLD--EPLLVSGSYDGTVK 354 (537)
T ss_pred ccEEEEEec--CCEEEEEecCceEE
Confidence 899999887 88999999999876
No 164
>KOG0268|consensus
Probab=98.76 E-value=6.5e-09 Score=84.01 Aligned_cols=100 Identities=12% Similarity=0.242 Sum_probs=77.7
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--CcE-
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GKI- 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~~- 76 (143)
+.|+|--+.|+.++. .|+.|.+||+.+..++.+.- ....+.|+|+|.+--|++|+ .|..++.+|.. .+.
T Consensus 193 vkfNpvETsILas~~-sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~------ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 193 VKFNPVETSILASCA-SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAAN------EDHNLYTYDMRNLSRPL 265 (433)
T ss_pred EecCCCcchheeeec-cCCceEEEecccCCccceeeeeccccceecCccccceeecc------ccccceehhhhhhcccc
Confidence 467888775544433 59999999999877766542 24578899999776677777 68899999884 332
Q ss_pred -EEeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 77 -IKRFNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 77 -l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+++.+...|.++.|+|.|+-++|||-|++||
T Consensus 266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR 297 (433)
T KOG0268|consen 266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR 297 (433)
T ss_pred hhhcccceeEEEeccCCCcchhccccccceEE
Confidence 3455688899999999999999999999998
No 165
>KOG2110|consensus
Probab=98.76 E-value=5e-08 Score=78.89 Aligned_cols=65 Identities=8% Similarity=0.220 Sum_probs=54.6
Q ss_pred CeEecCCCEEEEEecCCCCe-EEEEECCCceEEeeecc----CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 1 MKLRMRGTHIVLAELRDTGS-LEFVDTGDFSVMNAAEH----HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~-i~iWd~~~~~~~~~~~~----~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
++|||+|.+||+|+ ..|+ ||++.+.+|+.+..|.- -.|.+++||||+++|++.| ...+|.||.++
T Consensus 179 lafs~~G~llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS------~TeTVHiFKL~ 248 (391)
T KOG2110|consen 179 LAFSPDGTLLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS------NTETVHIFKLE 248 (391)
T ss_pred EEECCCCCEEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec------CCCeEEEEEec
Confidence 58999999999999 5675 89999999999988742 2588999999999999888 46678777653
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.75 E-value=1.5e-07 Score=72.21 Aligned_cols=99 Identities=16% Similarity=0.326 Sum_probs=75.5
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeec-CcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQ-GKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~-g~~ 76 (143)
++|+|+|+++++++. .++.+++|++.+++.+.... ...+.+++|+|+|+ ++++++ .|+.+.+|+.. +..
T Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~d~~i~~wd~~~~~~ 233 (466)
T COG2319 161 LAFSPDGKLLASGSS-LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS------SDGTIRLWDLSTGKL 233 (466)
T ss_pred EEECCCCCEEEecCC-CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec------CCCcEEEEECCCCcE
Confidence 479999998888862 28999999999766665543 45799999999999 555545 69999999885 666
Q ss_pred EE-ec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 77 IK-RF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 77 l~-~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+. .. +.... -..|+|++..+++++.|..++
T Consensus 234 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~ 266 (466)
T COG2319 234 LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIR 266 (466)
T ss_pred EeeecCCCCcce-eEeECCCCCEEEEecCCCcEE
Confidence 65 23 23333 228999998899999998876
No 167
>KOG0303|consensus
Probab=98.75 E-value=4.7e-08 Score=79.85 Aligned_cols=92 Identities=7% Similarity=0.132 Sum_probs=71.1
Q ss_pred CeEecCCC-EEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876 1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII 77 (143)
Q Consensus 1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l 77 (143)
|+|.|.-. .|+++| .|.+|.+||+.+++.+.+..| ..|++++|+-||.+|+|.+ .|+.|+|||. .|+.+
T Consensus 137 V~wHPtA~NVLlsag--~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~Ttc------kDKkvRv~dpr~~~~v 208 (472)
T KOG0303|consen 137 VQWHPTAPNVLLSAG--SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTC------KDKKVRVIDPRRGTVV 208 (472)
T ss_pred EeecccchhhHhhcc--CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeec------ccceeEEEcCCCCcEe
Confidence 46777654 667777 599999999999997777655 4699999999999999999 7999999999 58887
Q ss_pred Eec--c-CCcEEEEEEeeCCCeeeecC
Q psy5876 78 KRF--N-SPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 78 ~~~--~-~~~v~~l~wsP~~~~l~s~s 101 (143)
... | ...-..+.|--+|. ++|.+
T Consensus 209 ~e~~~heG~k~~Raifl~~g~-i~tTG 234 (472)
T KOG0303|consen 209 SEGVAHEGAKPARAIFLASGK-IFTTG 234 (472)
T ss_pred eecccccCCCcceeEEeccCc-eeeec
Confidence 764 3 22334456777888 55543
No 168
>KOG0274|consensus
Probab=98.75 E-value=9.2e-08 Score=81.94 Aligned_cols=92 Identities=21% Similarity=0.232 Sum_probs=76.8
Q ss_pred cCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEec-
Q psy5876 5 MRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRF- 80 (143)
Q Consensus 5 PdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~- 80 (143)
-.+.++++|+ .|.+|++|+++++.++..+. | ..|.++..+ +.++++|+ .|+.|++|++ .+++++..
T Consensus 299 ~~~~~~~sgs--~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs------~d~~v~VW~~~~~~cl~sl~ 368 (537)
T KOG0274|consen 299 IDPFLLVSGS--RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGS------YDGTVKVWDPRTGKCLKSLS 368 (537)
T ss_pred ccCceEeecc--CCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEe------cCceEEEEEhhhceeeeeec
Confidence 3455677777 59999999999999888764 4 579999998 88999999 5899999999 69999876
Q ss_pred -cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 81 -NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 81 -~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
|...|+++.+.+. +.+++|+.|.+||
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D~~Ik 395 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLDTTIK 395 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeeccceE
Confidence 4778999976655 8999999998886
No 169
>KOG1034|consensus
Probab=98.74 E-value=4.5e-08 Score=78.40 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=55.4
Q ss_pred CeEecCC-CEEEEEecCCCCeEEEEECCCceEEeeec-----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876 1 MKLRMRG-THIVLAELRDTGSLEFVDTGDFSVMNAAE-----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG 74 (143)
Q Consensus 1 i~~SPdG-~~las~~~~~dg~i~iWd~~~~~~~~~~~-----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g 74 (143)
|.|.|+. ++|++++ .|..|++|++.+..++..+. ...|.++.||+||++|++++ .|..+++|++.-
T Consensus 141 ik~~p~~~qlvls~S--kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScG------mDhslk~W~l~~ 212 (385)
T KOG1034|consen 141 IKFHPDRPQLVLSAS--KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCG------MDHSLKLWRLNV 212 (385)
T ss_pred hhcCCCCCcEEEEec--CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccC------CcceEEEEecCh
Confidence 3466776 4777777 69999999999999887653 25799999999999999999 799999999863
No 170
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.74 E-value=1.6e-07 Score=76.98 Aligned_cols=94 Identities=13% Similarity=0.174 Sum_probs=67.2
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEe
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKR 79 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~ 79 (143)
.|||||+++.+++ .||.|.++|+.+.+.+.+.. .....++++||||+|++++.. .++.+.|+|.+ .+.+..
T Consensus 43 ~~s~Dgr~~yv~~--rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~-----~~~~v~v~D~~tle~v~~ 115 (369)
T PF02239_consen 43 KFSPDGRYLYVAN--RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANY-----EPGTVSVIDAETLEPVKT 115 (369)
T ss_dssp E-TT-SSEEEEEE--TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEE-----ETTEEEEEETTT--EEEE
T ss_pred EecCCCCEEEEEc--CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEec-----CCCceeEeccccccceee
Confidence 5899999999998 58999999999999888765 346889999999999998875 58899999984 666665
Q ss_pred cc---------CCcEEEEEEeeCCC-eeeecCc
Q psy5876 80 FN---------SPTFCQLRWRPRPA-SLLSKEQ 102 (143)
Q Consensus 80 ~~---------~~~v~~l~wsP~~~-~l~s~s~ 102 (143)
.. ..++..+--+|..+ .+++-.+
T Consensus 116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred cccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence 32 23677887788887 4444433
No 171
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=1.1e-07 Score=79.35 Aligned_cols=94 Identities=11% Similarity=0.119 Sum_probs=62.3
Q ss_pred eEecCCCEEEEEecCCCCeEEEEE--CCC--ceE-EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVD--TGD--FSV-MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI 76 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd--~~~--~~~-~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~ 76 (143)
+|||||++|+..+. .+|..++|. ++. ++. ..+.....+...+|||||++|+..+... ....+.+||+.+..
T Consensus 287 ~wSPDG~~Laf~s~-~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~---g~~~I~v~dl~~g~ 362 (428)
T PRK01029 287 SFSPDGTRLVFVSN-KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK---GVRQICVYDLATGR 362 (428)
T ss_pred EECCCCCEEEEEEC-CCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC---CCcEEEEEECCCCC
Confidence 79999999987763 356555664 431 211 1222234567899999999999877421 12468899997554
Q ss_pred EEecc--CCcEEEEEEeeCCCeeee
Q psy5876 77 IKRFN--SPTFCQLRWRPRPASLLS 99 (143)
Q Consensus 77 l~~~~--~~~v~~l~wsP~~~~l~s 99 (143)
..... ...+....|+|||+.|+-
T Consensus 363 ~~~Lt~~~~~~~~p~wSpDG~~L~f 387 (428)
T PRK01029 363 DYQLTTSPENKESPSWAIDSLHLVY 387 (428)
T ss_pred eEEccCCCCCccceEECCCCCEEEE
Confidence 44332 235678999999998874
No 172
>KOG1332|consensus
Probab=98.72 E-value=4.1e-08 Score=76.09 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=75.2
Q ss_pred eEec--CCCEEEEEecCCCCeEEEEECCCceE--Eeee--ccCceEEEEECCC--CCEEEEeecCcceecCCcEEEEeec
Q psy5876 2 KLRM--RGTHIVLAELRDTGSLEFVDTGDFSV--MNAA--EHHQATDVEWDPT--GRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 2 ~~SP--dG~~las~~~~~dg~i~iWd~~~~~~--~~~~--~~~~v~~i~wsPd--G~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
+|.. -|.+||++++ ||.|-||.-.+++= ...+ |...|++|+|.|. |-.||+++ .|+.|.|.+++
T Consensus 63 ~wahPk~G~iLAScsY--DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lacas------SDG~vsvl~~~ 134 (299)
T KOG1332|consen 63 AWAHPKFGTILASCSY--DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS------SDGKVSVLTYD 134 (299)
T ss_pred eecccccCcEeeEeec--CceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEee------CCCcEEEEEEc
Confidence 4544 6999999996 89999999877632 2222 2357999999997 45788888 59999999885
Q ss_pred Cc------EEEeccCCcEEEEEEeeC---C-----------CeeeecCchhhHH
Q psy5876 74 GK------IIKRFNSPTFCQLRWRPR---P-----------ASLLSKEQVDKIK 107 (143)
Q Consensus 74 g~------~l~~~~~~~v~~l~wsP~---~-----------~~l~s~s~d~~i~ 107 (143)
+. .+...|.-.|++++|.|- | ++|+|++.|..||
T Consensus 135 ~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vk 188 (299)
T KOG1332|consen 135 SSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVK 188 (299)
T ss_pred CCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcccee
Confidence 32 334456778999999998 4 5699999998886
No 173
>KOG0647|consensus
Probab=98.72 E-value=6.4e-08 Score=76.74 Aligned_cols=104 Identities=11% Similarity=0.136 Sum_probs=78.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee-ccCceEEEEECCCCC--EEEEeecCcceecCCcEEEEeec-CcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGR--YVMSGVSLWKTKADTGYWQWSFQ-GKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~--~lat~s~~~~~~~D~~i~iW~~~-g~~ 76 (143)
++||-||..+++|+ .|+.+++||+.+++...-. |..+|..+.|-+... .|+||| -|++++.||.. ...
T Consensus 78 v~WsddgskVf~g~--~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGS------WDKTlKfWD~R~~~p 149 (347)
T KOG0647|consen 78 VCWSDDGSKVFSGG--CDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGS------WDKTLKFWDTRSSNP 149 (347)
T ss_pred EEEccCCceEEeec--cCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecc------cccceeecccCCCCe
Confidence 48999999999999 6999999999998665543 446899999998877 799999 69999999995 567
Q ss_pred EEecc-CCcEEEEEEeeCCCeeeecCchhhHHhhhhhh
Q psy5876 77 IKRFN-SPTFCQLRWRPRPASLLSKEQVDKIKKSLKKY 113 (143)
Q Consensus 77 l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i~~~~~~~ 113 (143)
+.... ..+++++..- .+-..+..++...+..||++-
T Consensus 150 v~t~~LPeRvYa~Dv~-~pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 150 VATLQLPERVYAADVL-YPMAVVATAERHIAVYNLENP 186 (347)
T ss_pred eeeeeccceeeehhcc-CceeEEEecCCcEEEEEcCCC
Confidence 77654 7788877553 222333444455555666553
No 174
>KOG1036|consensus
Probab=98.72 E-value=9.7e-08 Score=75.66 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=80.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-IIK 78 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l~ 78 (143)
|.|+|.++.|+++++ ||++++||+........+.+ .++.+++|.++ ..+++|+ .|+.|+.+|+.+. ...
T Consensus 19 v~f~~~~~~LLvssW--DgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~------~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSW--DGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGG------LDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred EEEcCcCCcEEEEec--cCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEec------cCceEEEEEecCCccee
Confidence 479999999999997 89999999997765555543 68999999985 4678888 6999999999643 332
Q ss_pred -eccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 79 -RFNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 79 -~~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
--|...+.++...|--..++|||=|++|+
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik 119 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIK 119 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEE
Confidence 23577899999999999999999999987
No 175
>KOG0301|consensus
Probab=98.71 E-value=4.8e-08 Score=84.05 Aligned_cols=94 Identities=7% Similarity=0.130 Sum_probs=75.6
Q ss_pred ecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc--
Q psy5876 4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN-- 81 (143)
Q Consensus 4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~-- 81 (143)
=|++ .+++|+ .|.+|++|.-++.......|...|..++.=|++. |++|+ .|+.|+.|+.+|.+|.+.+
T Consensus 149 l~e~-~~vTgs--aDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~-flScs------NDg~Ir~w~~~ge~l~~~~gh 218 (745)
T KOG0301|consen 149 LPEN-TYVTGS--ADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSH-FLSCS------NDGSIRLWDLDGEVLLEMHGH 218 (745)
T ss_pred cCCC-cEEecc--CcceeeeccCCchhhhhccchhheeeeEEecCCC-eEeec------CCceEEEEeccCceeeeeecc
Confidence 3666 667887 6999999997653333334445799999998875 56777 6999999999999887764
Q ss_pred CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 82 SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 82 ~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.+.|++++-.+++..++|+++|+++|
T Consensus 219 tn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 219 TNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred ceEEEEEEecCCCCeEEEecCCceEE
Confidence 67899999888889999999999987
No 176
>KOG2111|consensus
Probab=98.71 E-value=9.9e-08 Score=76.01 Aligned_cols=93 Identities=13% Similarity=0.219 Sum_probs=73.3
Q ss_pred EEEEEecCCCCeEEEEECCCceE---Ee-eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc--
Q psy5876 9 HIVLAELRDTGSLEFVDTGDFSV---MN-AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-- 81 (143)
Q Consensus 9 ~las~~~~~dg~i~iWd~~~~~~---~~-~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-- 81 (143)
+||--|+ .-|.|+|-|+...+. .. .-|...|.+++.+-+|..+||+|. ...-|+|||. +|.++.+++
T Consensus 150 ~LafPg~-k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt-----kGTLIRIFdt~~g~~l~E~RRG 223 (346)
T KOG2111|consen 150 LLAFPGF-KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST-----KGTLIRIFDTEDGTLLQELRRG 223 (346)
T ss_pred EEEcCCC-ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc-----CcEEEEEEEcCCCcEeeeeecC
Confidence 4444455 479999999764332 22 223468999999999999999995 4556899999 698888765
Q ss_pred --CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 82 --SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 82 --~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
...|++++|||+..+|+..|+-++++
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSdKgTlH 251 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSDKGTLH 251 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcCCCeEE
Confidence 45899999999999999999999876
No 177
>KOG0281|consensus
Probab=98.71 E-value=1.3e-08 Score=82.23 Aligned_cols=91 Identities=13% Similarity=0.289 Sum_probs=71.7
Q ss_pred cCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec-
Q psy5876 5 MRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF- 80 (143)
Q Consensus 5 PdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~- 80 (143)
-|...+++|. .|++|.|||.++..++..+ |.+.|.++.| |.|.|++|| .|.+|+|||++ |+.+...
T Consensus 205 YDD~kiVSGl--rDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGS------SDsTvrvWDv~tge~l~tli 274 (499)
T KOG0281|consen 205 YDDEKIVSGL--RDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGS------SDSTVRVWDVNTGEPLNTLI 274 (499)
T ss_pred ecchhhhccc--ccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecC------CCceEEEEeccCCchhhHHh
Confidence 3556778887 6999999999998877654 3456776666 567999999 59999999995 8887764
Q ss_pred -cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 81 -NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 81 -~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
|...|.++.|+. .+++|+|.|.+|+
T Consensus 275 hHceaVLhlrf~n--g~mvtcSkDrsia 300 (499)
T KOG0281|consen 275 HHCEAVLHLRFSN--GYMVTCSKDRSIA 300 (499)
T ss_pred hhcceeEEEEEeC--CEEEEecCCceeE
Confidence 477899998874 4899999998775
No 178
>KOG2111|consensus
Probab=98.70 E-value=1.1e-07 Score=75.82 Aligned_cols=65 Identities=15% Similarity=0.332 Sum_probs=55.6
Q ss_pred CeEecCCCEEEEEecCCCCe-EEEEECCCceEEeeec----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 1 MKLRMRGTHIVLAELRDTGS-LEFVDTGDFSVMNAAE----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~-i~iWd~~~~~~~~~~~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
++.+-+|..||+++ ..|+ |||||+.+++++..+. +..+++++||||+.+||.+| ..+++.||.+.
T Consensus 187 v~Ln~~Gt~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS------dKgTlHiF~l~ 256 (346)
T KOG2111|consen 187 VALNLQGTLVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS------DKGTLHIFSLR 256 (346)
T ss_pred EEEcCCccEEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc------CCCeEEEEEee
Confidence 35678999999999 4676 8999999999988763 45799999999999999999 47788888774
No 179
>KOG2445|consensus
Probab=98.68 E-value=2.8e-07 Score=73.41 Aligned_cols=111 Identities=14% Similarity=0.287 Sum_probs=83.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECC----CceEEeee--ccCceEEEEECCC--CCEEEEeecCcceecCCcEEEEee
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTG----DFSVMNAA--EHHQATDVEWDPT--GRYVMSGVSLWKTKADTGYWQWSF 72 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~----~~~~~~~~--~~~~v~~i~wsPd--G~~lat~s~~~~~~~D~~i~iW~~ 72 (143)
+.|.+-|+++|+|+ .|++|.|||.+ +..+.... +...|..|.|.|- |+-+|++| .|+++.||.-
T Consensus 19 Vs~D~~GRRmAtCS--sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS------~Drtv~iWEE 90 (361)
T KOG2445|consen 19 VSFDFYGRRMATCS--SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS------YDRTVSIWEE 90 (361)
T ss_pred eeecccCceeeecc--CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe------cCCceeeeee
Confidence 47899999999999 69999999944 34454433 3467999999874 99999999 7999999975
Q ss_pred c-------CcE-E--Eec--cCCcEEEEEEeeC--CCeeeecCchhhHH-------hhhhhhchhccH
Q psy5876 73 Q-------GKI-I--KRF--NSPTFCQLRWRPR--PASLLSKEQVDKIK-------KSLKKYTPAFEA 119 (143)
Q Consensus 73 ~-------g~~-l--~~~--~~~~v~~l~wsP~--~~~l~s~s~d~~i~-------~~~~~~~~~~e~ 119 (143)
+ |+. + .+. ....|+++.|.|. |-.|++++.|+.+| -|+++++-+-|.
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 2 221 1 112 2457999999997 66899999999998 566666655554
No 180
>KOG2919|consensus
Probab=98.68 E-value=1.9e-07 Score=74.84 Aligned_cols=92 Identities=16% Similarity=0.238 Sum_probs=70.2
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCC-------ce-------E-EeeeccCceEEEEEC-------CCCCEEEEeecCc
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGD-------FS-------V-MNAAEHHQATDVEWD-------PTGRYVMSGVSLW 59 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~-------~~-------~-~~~~~~~~v~~i~ws-------PdG~~lat~s~~~ 59 (143)
.|||||..|++-+ .|..+++|++.. .. . +...+...|.+.+|= |+..++|+.+
T Consensus 56 kWSPDGSciL~~s--edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss--- 130 (406)
T KOG2919|consen 56 KWSPDGSCILSLS--EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS--- 130 (406)
T ss_pred eeCCCCceEEeec--ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc---
Confidence 6999999999988 589999999761 10 1 111234568888887 8888999888
Q ss_pred ceecCCcEEEEee-cCcEEEecc----C---CcEEEEEEeeCCCeeeecC
Q psy5876 60 KTKADTGYWQWSF-QGKIIKRFN----S---PTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 60 ~~~~D~~i~iW~~-~g~~l~~~~----~---~~v~~l~wsP~~~~l~s~s 101 (143)
.|+.|.+||. +|++-...+ . ....+++|+|||..|+.|-
T Consensus 131 ---r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy 177 (406)
T KOG2919|consen 131 ---RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY 177 (406)
T ss_pred ---ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc
Confidence 5999999999 687665543 2 2457899999999999874
No 181
>KOG0974|consensus
Probab=98.67 E-value=1.3e-07 Score=84.19 Aligned_cols=97 Identities=11% Similarity=0.160 Sum_probs=83.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEe--eecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN--AAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~--~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l 77 (143)
+.||-||+++++.+ +|.++|+|++++.+... -+.| ..+..++++|. +|+|++ .|-+.++|+.+|..+
T Consensus 181 i~~s~dg~~i~s~S--dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~g------edctcrvW~~~~~~l 250 (967)
T KOG0974|consen 181 IVTSLDGRYIASVS--DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVG------EDCTCRVWGVNGTQL 250 (967)
T ss_pred EEEccCCcEEEEEe--cCcceeeeecccccccCcccccccceeEEEEeccc--eeEEec------cceEEEEEeccccee
Confidence 35789999999999 79999999999877654 2333 57999999999 999999 799999999999987
Q ss_pred Eec--c-CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--N-SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~-~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
... | ...++.++..++...++|++.|+.+|
T Consensus 251 ~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 251 EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK 283 (967)
T ss_pred hhhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence 654 3 56899999999999999999999988
No 182
>KOG1408|consensus
Probab=98.67 E-value=1.3e-07 Score=82.13 Aligned_cols=97 Identities=15% Similarity=0.221 Sum_probs=83.7
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeec----c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE----H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK 75 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~----~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~ 75 (143)
.--|+.+++++++ +|..|+|+|+.++++...|. + ...-.+..+|.|-||||.. .|+++.++|+ .|+
T Consensus 603 ~Vdp~~k~v~t~c--QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc------sdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVC--QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC------SDKTLCFVDFVSGE 674 (1080)
T ss_pred eeCCCcceEEEEe--cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee------cCCceEEEEeccch
Confidence 3468899999999 79999999999999888763 2 3577889999999999998 5999999999 699
Q ss_pred EEEec--cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 76 IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 76 ~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
++.+. |..-|..+.|.||=+.|+|.+.|+=|
T Consensus 675 cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCI 707 (1080)
T KOG1408|consen 675 CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCI 707 (1080)
T ss_pred hhhhhcCcchheeeeeecccchhheeecCCceE
Confidence 98764 46789999999999999999988743
No 183
>KOG0299|consensus
Probab=98.66 E-value=4.3e-08 Score=81.00 Aligned_cols=99 Identities=8% Similarity=0.132 Sum_probs=74.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE-E
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI-I 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~-l 77 (143)
++.||||+|||+|+ .|..|.||+.++++.++.+. -..|.+++|--.-..+.+++ .|.++++|+++-.- +
T Consensus 208 ~avS~Dgkylatgg--~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s------~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 208 LAVSSDGKYLATGG--RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS------ADRSVKVWSIDQLSYV 279 (479)
T ss_pred EEEcCCCcEEEecC--CCceEEEecCcccchhhcccccccceeeeeeecCccceeeee------cCCceEEEehhHhHHH
Confidence 46799999999999 58999999999998877653 35799999998777888888 59999999996443 3
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.++ |.+.|.++.-...+..+-.|+.|.++|
T Consensus 280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~r 311 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVR 311 (479)
T ss_pred HHHhCCccceeeechhcccceEEeccccceeE
Confidence 232 466777776665555333344777765
No 184
>KOG2139|consensus
Probab=98.64 E-value=2e-07 Score=75.66 Aligned_cols=99 Identities=14% Similarity=0.300 Sum_probs=74.5
Q ss_pred CeEecCCC-EEEEEecCCCCeEEEEECCC----ce-----------EEeeeccCceEEEEECCCCCEEEEeecCcceecC
Q psy5876 1 MKLRMRGT-HIVLAELRDTGSLEFVDTGD----FS-----------VMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKAD 64 (143)
Q Consensus 1 i~~SPdG~-~las~~~~~dg~i~iWd~~~----~~-----------~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D 64 (143)
++|-|.+. .|++|. .+-|.||..+. .. .+....|.+|+++.|.+||..++++|- .|
T Consensus 146 lawRPlsaselavgC---r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~-----gs 217 (445)
T KOG2139|consen 146 LAWRPLSASELAVGC---RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF-----GS 217 (445)
T ss_pred EEeccCCcceeeeee---cceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc-----Cc
Confidence 47878765 666666 46789999662 11 111112468999999999999999996 68
Q ss_pred CcEEEEeec-CcEEEe--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 65 TGYWQWSFQ-GKIIKR--FNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 65 ~~i~iW~~~-g~~l~~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
..|.|||++ |..+.- .....+.-+.|||||..|+.+.-|...+
T Consensus 218 ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfr 263 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFR 263 (445)
T ss_pred ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceee
Confidence 899999994 665443 3467899999999999999998887665
No 185
>KOG0646|consensus
Probab=98.61 E-value=3.9e-07 Score=75.48 Aligned_cols=99 Identities=14% Similarity=0.226 Sum_probs=80.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC---------ceEEeeecc--CceEEEEECCC--CCEEEEeecCcceecCCcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD---------FSVMNAAEH--HQATDVEWDPT--GRYVMSGVSLWKTKADTGY 67 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~---------~~~~~~~~~--~~v~~i~wsPd--G~~lat~s~~~~~~~D~~i 67 (143)
+.||-||.+|++|| .||.|.+|++.+ .+.+..+++ -+|+++.-.+. .-+|+|+| .|.++
T Consensus 129 L~fs~dgs~iiTgs--kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS------~D~t~ 200 (476)
T KOG0646|consen 129 LKFSDDGSHIITGS--KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS------EDRTI 200 (476)
T ss_pred EEEeCCCcEEEecC--CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec------CCceE
Confidence 46999999999999 699999999542 344555532 47888766655 45899999 79999
Q ss_pred EEEeec-CcEEEecc-CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 68 WQWSFQ-GKIIKRFN-SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 68 ~iW~~~-g~~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
++||+. |.+|.+.. ...+.+++..|-...+..|++++.|-
T Consensus 201 k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 201 KLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIF 242 (476)
T ss_pred EEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEE
Confidence 999995 88887765 66899999999999999999999875
No 186
>KOG2314|consensus
Probab=98.61 E-value=1.1e-07 Score=80.50 Aligned_cols=101 Identities=13% Similarity=0.259 Sum_probs=79.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcce----e-cCCcEEEEee-cC
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKT----K-ADTGYWQWSF-QG 74 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~----~-~D~~i~iW~~-~g 74 (143)
+.|||.|+||++-- ..| |.+|.-.+...+..+.|..|.-+.|||+.+||+|-|..+.. . ....+.|||+ +|
T Consensus 216 v~wSP~GTYL~t~H--k~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFH--KQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred EEecCCceEEEEEe--ccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 47999999999965 455 77999999988999989999999999999999999975532 1 1257899999 68
Q ss_pred cEEEeccC--C---cEEEEEEeeCCCeeeecCchh
Q psy5876 75 KIIKRFNS--P---TFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 75 ~~l~~~~~--~---~v~~l~wsP~~~~l~s~s~d~ 104 (143)
.+.+.++. . .-.=+.||-|+++++-...+.
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s 327 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS 327 (698)
T ss_pred chhcceeccCCCccccceEEeccCCceeEEeccce
Confidence 87776542 2 233579999999999766543
No 187
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=4.6e-07 Score=75.85 Aligned_cols=97 Identities=12% Similarity=0.220 Sum_probs=62.3
Q ss_pred eEecCCCEEEEEecCCCC--eEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876 2 KLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK 78 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~ 78 (143)
+|||||+.|+.... .+| .|.++|+++++...... .......+|||||++|+..+... ....++++++.+....
T Consensus 268 ~wSPDG~~La~~~~-~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~---g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 268 RFSPDGKKLALVLS-KDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG---GKPQIYRVNLASGKVS 343 (448)
T ss_pred eECCCCCEEEEEEe-CCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC---CCceEEEEECCCCCEE
Confidence 79999999987542 355 47777887765433222 23467889999999998877410 1235666677543333
Q ss_pred ec--cCCcEEEEEEeeCCCeeeecCc
Q psy5876 79 RF--NSPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 79 ~~--~~~~v~~l~wsP~~~~l~s~s~ 102 (143)
.. ........+|+|||+.|+-.+.
T Consensus 344 ~Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 344 RLTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred EEecCCCCCcCeeECCCCCEEEEEEe
Confidence 22 2223345799999998876544
No 188
>KOG1273|consensus
Probab=98.60 E-value=5.9e-08 Score=77.57 Aligned_cols=68 Identities=21% Similarity=0.264 Sum_probs=56.8
Q ss_pred eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe---ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 34 AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR---FNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 34 ~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~---~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+.++....++.|||.|.|||.|. .|+.+.|||+.-..+.+ .|..+|.+++|||+|..|+|+|.|-.|+
T Consensus 20 tld~~~a~~~~Fs~~G~~lAvGc------~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~ 90 (405)
T KOG1273|consen 20 TLDNPLAECCQFSRWGDYLAVGC------ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIK 90 (405)
T ss_pred eccCCccceEEeccCcceeeeec------cCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeE
Confidence 34444578999999999999999 69999999996554443 4678999999999999999999987765
No 189
>KOG1523|consensus
Probab=98.59 E-value=1.9e-07 Score=74.58 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=80.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEEC-CCce--E--EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDT-GDFS--V--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~-~~~~--~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~ 75 (143)
|.|+|.++.|++++ .|..-++|.. +.++ . +..-.....+++.|+|.+..||+|| .-..|.||-++++
T Consensus 61 vdWap~snrIvtcs--~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgS------gar~isVcy~E~E 132 (361)
T KOG1523|consen 61 VDWAPKSNRIVTCS--HDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGS------GARLISVCYYEQE 132 (361)
T ss_pred EeecCCCCceeEcc--CCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEecc------CccEEEEEEEecc
Confidence 57999999999999 5888899997 3322 2 1111235689999999999999999 4677888888654
Q ss_pred -------EEEeccCCcEEEEEEeeCCCeeeecCchhhHHhhhhhhchhccH
Q psy5876 76 -------IIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEA 119 (143)
Q Consensus 76 -------~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~~~~~~~~~~~e~ 119 (143)
.+.+-....|.++.|+|++-.|+.||-|.+.| -|..|.+.-|+
T Consensus 133 NdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~r-VfSayIK~Vde 182 (361)
T KOG1523|consen 133 NDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCR-VFSAYIKGVDE 182 (361)
T ss_pred cceehhhhhCCccccceeeeeccCCcceecccccCccee-EEEEeeecccc
Confidence 12222356899999999999999999888765 23334444333
No 190
>KOG0301|consensus
Probab=98.59 E-value=7.5e-07 Score=76.86 Aligned_cols=107 Identities=13% Similarity=0.194 Sum_probs=77.6
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCceEEeeec-c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF 80 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~ 80 (143)
+=|++ .+++|+ .||.|++|++ +++++.+++ | ..+++++..++++.|+|++ .|++++||+.. .+.+..
T Consensus 187 vl~~~-~flScs--NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g------EDrtlriW~~~-e~~q~I 255 (745)
T KOG0301|consen 187 VLDDS-HFLSCS--NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG------EDRTLRIWKKD-ECVQVI 255 (745)
T ss_pred EecCC-CeEeec--CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec------CCceEEEeecC-ceEEEE
Confidence 33554 455666 4999999999 567766654 3 4699999999999999999 79999999986 554433
Q ss_pred --cCCcEEEEEEeeCCCeeeecCchhhHH--------hhhhhhchhccHHh
Q psy5876 81 --NSPTFCQLRWRPRPASLLSKEQVDKIK--------KSLKKYTPAFEAKD 121 (143)
Q Consensus 81 --~~~~v~~l~wsP~~~~l~s~s~d~~i~--------~~~~~~~~~~e~~~ 121 (143)
+...+|++..=++|. |++|+-|+-|| +.-.+-++.||.+.
T Consensus 256 ~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~As~evl~afd~~v 305 (745)
T KOG0301|consen 256 TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKASDEVLKAFDAEV 305 (745)
T ss_pred ecCccceEEEEEeeCCC-EEEeccCceEEEEEecccccCCHHHHHHHHHHH
Confidence 355899999999998 67777777666 22224445565555
No 191
>KOG1524|consensus
Probab=98.59 E-value=1.2e-07 Score=80.06 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=54.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCc-cee---cCCcEE-EEeecC
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLW-KTK---ADTGYW-QWSFQG 74 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~-~~~---~D~~i~-iW~~~g 74 (143)
+.|||..+.|++|| .|-..++||....-+...- |..+|++++|.|| +.++.+|.+. |+. ...-+. -|+.+|
T Consensus 192 ~~W~~~s~lI~sgG--ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 192 LSWSTQSNIIASGG--EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSPRVGSIFNLSWSADG 268 (737)
T ss_pred eecCccccceeecC--CceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeeeeeeecCCCccceEEEEEcCCC
Confidence 47999999999999 6899999997643333332 3468999999999 7777787532 221 122223 389999
Q ss_pred cEEEec
Q psy5876 75 KIIKRF 80 (143)
Q Consensus 75 ~~l~~~ 80 (143)
.++.--
T Consensus 269 TQ~a~g 274 (737)
T KOG1524|consen 269 TQATCG 274 (737)
T ss_pred ceeecc
Confidence 887643
No 192
>KOG0650|consensus
Probab=98.59 E-value=5.6e-07 Score=76.81 Aligned_cols=103 Identities=15% Similarity=0.276 Sum_probs=76.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCE--EEEeecCc------------------
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRY--VMSGVSLW------------------ 59 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~--lat~s~~~------------------ 59 (143)
|+-.|.|.+||+|+ .||+|+||.+.||.++.+... ..|.+|+|+|.+.. ||.+...-
T Consensus 406 iSvdp~G~wlasGs--dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ 483 (733)
T KOG0650|consen 406 ISVDPSGEWLASGS--DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTK 483 (733)
T ss_pred EEecCCcceeeecC--CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchh
Confidence 35579999999999 799999999999999988753 56999999999884 44443210
Q ss_pred -----c---eecCCcEEEEeec-------CcEEEeccCCcEEEEEEeeCCCeeeecCchhh
Q psy5876 60 -----K---TKADTGYWQWSFQ-------GKIIKRFNSPTFCQLRWRPRPASLLSKEQVDK 105 (143)
Q Consensus 60 -----~---~~~D~~i~iW~~~-------g~~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~ 105 (143)
. ...+..+..|.-. |-++...+...|.++.|+-+|.+|++...++.
T Consensus 484 ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 484 ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 0 1234567788653 21344456789999999999999999876543
No 193
>KOG1310|consensus
Probab=98.58 E-value=1.3e-07 Score=80.21 Aligned_cols=104 Identities=13% Similarity=0.250 Sum_probs=82.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEe---eeccCceEEEEECC--CCCEEEEeecCcceecCCcEEEEeecC-
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN---AAEHHQATDVEWDP--TGRYVMSGVSLWKTKADTGYWQWSFQG- 74 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~---~~~~~~v~~i~wsP--dG~~lat~s~~~~~~~D~~i~iW~~~g- 74 (143)
+.|+.||.+|++|+ +|-.+.|||.-..|++. +.|...|.++.|-| ..+.++||. .|+.|+++|++.
T Consensus 56 LeWn~dG~lL~SGS--DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA------gDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 56 LEWNADGELLASGS--DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA------GDKLIKLFDLDSS 127 (758)
T ss_pred eeecCCCCEEeecC--CcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc------CcceEEEEecccc
Confidence 57999999999999 78899999988766654 44456899999998 567888888 699999999962
Q ss_pred --c--------EEE--eccCCcEEEEEEeeCC-CeeeecCchhhHH-hhhhh
Q psy5876 75 --K--------IIK--RFNSPTFCQLRWRPRP-ASLLSKEQVDKIK-KSLKK 112 (143)
Q Consensus 75 --~--------~l~--~~~~~~v~~l~wsP~~-~~l~s~s~d~~i~-~~~~~ 112 (143)
. .++ ..+.+.|..++--|++ ..+.++++|++|| .++||
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 1 112 2357789999999998 5777999999997 45554
No 194
>KOG2315|consensus
Probab=98.58 E-value=5.6e-07 Score=76.00 Aligned_cols=99 Identities=10% Similarity=0.180 Sum_probs=75.9
Q ss_pred CeEecCCCEEEEE-ecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEEE
Q psy5876 1 MKLRMRGTHIVLA-ELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KIIK 78 (143)
Q Consensus 1 i~~SPdG~~las~-~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l~ 78 (143)
+.|||+|+.++++ |+ ...++.|+|.+ +..+..+...+=+.+-|+|.|++|+-++-.- .-+.+-|||+.. ++|.
T Consensus 276 v~W~~s~~EF~VvyGf-MPAkvtifnlr-~~~v~df~egpRN~~~fnp~g~ii~lAGFGN---L~G~mEvwDv~n~K~i~ 350 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGF-MPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNIILLAGFGN---LPGDMEVWDVPNRKLIA 350 (566)
T ss_pred EEECCCCCEEEEEEec-ccceEEEEcCC-CCEeEeCCCCCccceEECCCCCEEEEeecCC---CCCceEEEeccchhhcc
Confidence 4799999977664 55 67899999977 4677777666778899999999999888311 245789999954 4666
Q ss_pred eccCCcEEEEEEeeCCCeeeecCchh
Q psy5876 79 RFNSPTFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 79 ~~~~~~v~~l~wsP~~~~l~s~s~d~ 104 (143)
+.....-.-+.|+|||++++|+.-..
T Consensus 351 ~~~a~~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 351 KFKAANTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred ccccCCceEEEEcCCCcEEEEEeccc
Confidence 66655556689999999999986443
No 195
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.58 E-value=2.9e-07 Score=50.95 Aligned_cols=36 Identities=19% Similarity=0.570 Sum_probs=30.4
Q ss_pred eEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876 30 SVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS 71 (143)
Q Consensus 30 ~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~ 71 (143)
+++.++. ...|++++|+|++++|+|++ .|+.+++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~------~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGS------SDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEE------TTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeC------CCCEEEEEC
Confidence 4555543 36899999999999999999 699999997
No 196
>KOG0270|consensus
Probab=98.57 E-value=2.8e-07 Score=76.03 Aligned_cols=92 Identities=12% Similarity=0.204 Sum_probs=71.9
Q ss_pred CEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCC-CCEEEEeecCcceecCCcEEEEeecC--cEEEecc-
Q psy5876 8 THIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPT-GRYVMSGVSLWKTKADTGYWQWSFQG--KIIKRFN- 81 (143)
Q Consensus 8 ~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPd-G~~lat~s~~~~~~~D~~i~iW~~~g--~~l~~~~- 81 (143)
+.||+|| .|.+|.+||++++++..++. ...|.+++|+|. ..+|++|| .|+++.+.|+.. ..=..+.
T Consensus 257 nVLaSgs--aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs------~D~~V~l~D~R~~~~s~~~wk~ 328 (463)
T KOG0270|consen 257 NVLASGS--ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGS------YDGTVALKDCRDPSNSGKEWKF 328 (463)
T ss_pred eeEEecC--CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecc------ccceEEeeeccCccccCceEEe
Confidence 4788888 69999999999999877664 357999999995 66889999 699999999852 2222344
Q ss_pred CCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876 82 SPTFCQLRWRPRPA-SLLSKEQVDKIK 107 (143)
Q Consensus 82 ~~~v~~l~wsP~~~-~l~s~s~d~~i~ 107 (143)
...|-.++|.|..+ ..+.+.+|+.++
T Consensus 329 ~g~VEkv~w~~~se~~f~~~tddG~v~ 355 (463)
T KOG0270|consen 329 DGEVEKVAWDPHSENSFFVSTDDGTVY 355 (463)
T ss_pred ccceEEEEecCCCceeEEEecCCceEE
Confidence 56789999999886 455677888776
No 197
>KOG0322|consensus
Probab=98.56 E-value=2.8e-07 Score=72.14 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=52.9
Q ss_pred ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE--eccCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 39 QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK--RFNSPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 39 ~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~--~~~~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
++..+..-||++.+||++ -|+.++||+.+ ++.|. +.|.+.|++++|+|+-+.++.+|+|..|
T Consensus 253 Gv~gvrIRpD~KIlATAG------WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAG------WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred CccceEEccCCcEEeecc------cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence 456677779999999999 69999999994 77654 5678999999999999999999999866
No 198
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.56 E-value=8e-07 Score=72.56 Aligned_cols=96 Identities=11% Similarity=0.113 Sum_probs=65.0
Q ss_pred eEecCCCEEEEEecCCCC--eEEEEECCCceEEe-eeccCceEEEEECCCCCEEEEeecCcceecCC---cEEEEeecCc
Q psy5876 2 KLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMN-AAEHHQATDVEWDPTGRYVMSGVSLWKTKADT---GYWQWSFQGK 75 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~-~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~---~i~iW~~~g~ 75 (143)
.|+|||++|+.++. ..| .|.++|..+++... ..+...+..++|||||++|+.++. ++ .+.+||+.+.
T Consensus 284 ~~s~dg~~l~~~s~-~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~------~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 284 SWSPDGKSIAFTSD-RGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHR------EGGGFNIAVMDLDGG 356 (417)
T ss_pred EECCCCCEEEEEEC-CCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEc------cCCceEEEEEeCCCC
Confidence 69999999987663 233 57778877665332 223356778899999999998884 32 5777887654
Q ss_pred EEEecc-CCcEEEEEEeeCCCeeeecCchh
Q psy5876 76 IIKRFN-SPTFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 76 ~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~ 104 (143)
...... ........|+|+|..|+..+.+.
T Consensus 357 ~~~~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 357 GERVLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CeEEccCCCCCCCceECCCCCEEEEEEeCC
Confidence 333222 22334568999999998776544
No 199
>KOG4378|consensus
Probab=98.55 E-value=2.4e-07 Score=77.72 Aligned_cols=99 Identities=11% Similarity=0.167 Sum_probs=75.5
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee---ccCceEEEEECCCCCE-EEEeecCcceecCCcEEEEeecCcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA---EHHQATDVEWDPTGRY-VMSGVSLWKTKADTGYWQWSFQGKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~---~~~~v~~i~wsPdG~~-lat~s~~~~~~~D~~i~iW~~~g~~ 76 (143)
+.|||-.++|++..- .+|.|.+||+.....+... |..++..|+|||.... |++.+ .|+.|.+||...+.
T Consensus 170 l~ys~skr~lL~~as-d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG------~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIAS-DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG------YDKKINIYDIRSQA 242 (673)
T ss_pred eecccccceeeEeec-cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec------ccceEEEeeccccc
Confidence 467888887765332 6899999999876666543 3468999999998875 55556 79999999997554
Q ss_pred EE-ecc-CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 77 IK-RFN-SPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 77 l~-~~~-~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
.. ... ..++..++|.|+|.+|+.|.-.++|
T Consensus 243 s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 243 STDRLTYSHPLSTVAFSECGTYLCAGNSKGEL 274 (673)
T ss_pred ccceeeecCCcceeeecCCceEEEeecCCceE
Confidence 33 222 6789999999999999999776654
No 200
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.55 E-value=1.4e-06 Score=66.81 Aligned_cols=98 Identities=17% Similarity=0.334 Sum_probs=74.8
Q ss_pred ecCCC-EEEEEecCCCCeEEEEECCC-ceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876 4 RMRGT-HIVLAELRDTGSLEFVDTGD-FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK 78 (143)
Q Consensus 4 SPdG~-~las~~~~~dg~i~iWd~~~-~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~ 78 (143)
+|++. +++..+. .|+.+.+||... ....... +...+..++|+|+++++++++. .|+.+++|+.. +..+.
T Consensus 119 ~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 192 (466)
T COG2319 119 SPDGNSILLASSS-LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS-----LDGTIKLWDLRTGKPLS 192 (466)
T ss_pred CCCcceEEeccCC-CCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC-----CCCceEEEEcCCCceEE
Confidence 78888 5554442 489999999987 5544433 3357899999999998888872 38999999996 56555
Q ss_pred ec--cCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876 79 RF--NSPTFCQLRWRPRPA-SLLSKEQVDKIK 107 (143)
Q Consensus 79 ~~--~~~~v~~l~wsP~~~-~l~s~s~d~~i~ 107 (143)
.. +...|..++|+|++. .+++++.|..|+
T Consensus 193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred eeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 44 467899999999998 666668888887
No 201
>KOG2048|consensus
Probab=98.54 E-value=8.8e-07 Score=76.17 Aligned_cols=95 Identities=13% Similarity=0.247 Sum_probs=76.2
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCce-EEeee---ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS-VMNAA---EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~-~~~~~---~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~ 75 (143)
++||.+.+.||++- .+|+|+||++...- +...+ +...|-+++|++.||+|-++. ++.|.-||+ +++
T Consensus 31 lA~s~kS~~lAvsR--t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~-------sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSR--TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGL-------SGSITEWDLHTLK 101 (691)
T ss_pred EEEeccCCceeeec--cCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecC-------CceEEEEecccCc
Confidence 58899999999986 69999999987532 22222 234699999998888765554 889999999 688
Q ss_pred EEEecc--CCcEEEEEEeeCCCeeeecCchh
Q psy5876 76 IIKRFN--SPTFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 76 ~l~~~~--~~~v~~l~wsP~~~~l~s~s~d~ 104 (143)
+++... ...||+++-+|-+..++-+++|+
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddG 132 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDG 132 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCc
Confidence 877654 66899999999999999999998
No 202
>KOG1538|consensus
Probab=98.54 E-value=4.3e-08 Score=84.61 Aligned_cols=98 Identities=11% Similarity=0.125 Sum_probs=79.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF 80 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~ 80 (143)
++||.||+.+|+|+ .|..|-+|+-.-.-.+...|...|.++.|+|-.+.|+|++ -+-+-+|+...+-+.+.
T Consensus 59 VAys~dGkrFASG~--aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCs-------LsdFglWS~~qK~V~K~ 129 (1081)
T KOG1538|consen 59 VAYAKDGKRFASGS--ADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCS-------LSDFGLWSPEQKSVSKH 129 (1081)
T ss_pred EEEccCCceeccCC--CceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcc-------hhhccccChhhhhHHhh
Confidence 58999999999999 6999999996532333333456799999999999999999 34678999976655544
Q ss_pred -cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 81 -NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 81 -~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
...++.+.+|..||++++-|-.+++|-
T Consensus 130 kss~R~~~CsWtnDGqylalG~~nGTIs 157 (1081)
T KOG1538|consen 130 KSSSRIICCSWTNDGQYLALGMFNGTIS 157 (1081)
T ss_pred hhheeEEEeeecCCCcEEEEeccCceEE
Confidence 477899999999999999998888763
No 203
>KOG1007|consensus
Probab=98.53 E-value=2e-07 Score=73.85 Aligned_cols=97 Identities=14% Similarity=0.255 Sum_probs=75.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceE-Eeee------c-cCceEEEEECC--CCCEEEEeecCcceecCCcEEEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV-MNAA------E-HHQATDVEWDP--TGRYVMSGVSLWKTKADTGYWQW 70 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~-~~~~------~-~~~v~~i~wsP--dG~~lat~s~~~~~~~D~~i~iW 70 (143)
|-|-||+..|++-. |..|.+|+++.... +... + ....++-+||| ||..+++.+ |+++..|
T Consensus 129 vew~Pns~klasm~---dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-------d~tl~~~ 198 (370)
T KOG1007|consen 129 VEWEPNSDKLASMD---DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-------DSTLQFW 198 (370)
T ss_pred EEEcCCCCeeEEec---cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-------CCcEEEE
Confidence 35999999999864 88999999886443 2211 1 24688999999 999999998 8999999
Q ss_pred eec-CcEEE---eccCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876 71 SFQ-GKIIK---RFNSPTFCQLRWRPRPA-SLLSKEQVDKIK 107 (143)
Q Consensus 71 ~~~-g~~l~---~~~~~~v~~l~wsP~~~-~l~s~s~d~~i~ 107 (143)
|+. -++.. ..|...|.++.|+|+-+ .|+|+++|+.||
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvr 240 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVR 240 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEE
Confidence 995 33333 34566899999999986 577999999988
No 204
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=1.1e-06 Score=73.26 Aligned_cols=98 Identities=4% Similarity=0.001 Sum_probs=60.8
Q ss_pred eEecCCCEEEEEecC-CCCeEEEEECCCceEEeeeccC-ceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876 2 KLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAEHH-QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR 79 (143)
Q Consensus 2 ~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~~~-~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~ 79 (143)
.|||||+.|+..... .+..|.++|+.+++...-..+. ......|||||+.|+-.+... ....|++.++.|....+
T Consensus 239 ~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~---g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 239 DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL---GYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred EECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCC---CCceEEEEECCCCCeEe
Confidence 699999988765421 2456888888776533211122 234568999999998887421 12367777886544433
Q ss_pred ccCCcEEEEEEeeCCCeeeecCc
Q psy5876 80 FNSPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 80 ~~~~~v~~l~wsP~~~~l~s~s~ 102 (143)
......+...|+|||+.|+-.+.
T Consensus 316 lt~~g~~~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 316 VVFHGKNNSSVSTYKNYIVYSSR 338 (419)
T ss_pred CccCCCcCceECCCCCEEEEEEc
Confidence 22111123599999998886543
No 205
>KOG1963|consensus
Probab=98.51 E-value=7.5e-07 Score=78.14 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=75.5
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceE-Ee-----eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV-MN-----AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG 74 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~-~~-----~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g 74 (143)
|.++|-|++.+..- +..+.+|+..+... .. ..|...+++.++||+++++|+|- .|+.|.+|.--|
T Consensus 166 I~~~~~ge~~~i~~---~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d------~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVH---MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGD------SDGRILVWRDFG 236 (792)
T ss_pred EEEcCCceEEEEEE---eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEec------cCCcEEEEeccc
Confidence 45678888887775 56788999886331 11 12234689999999999999999 689999997644
Q ss_pred -------cEEEeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 75 -------KIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 75 -------~~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
..+.++|.+.|.+++|+++|.+|+||+.++.+.
T Consensus 237 ~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv 276 (792)
T KOG1963|consen 237 SSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLV 276 (792)
T ss_pred cccccccceEEEecccccceeEEecCCceEeecccceEEE
Confidence 134567899999999999999999999887543
No 206
>KOG4283|consensus
Probab=98.50 E-value=6.9e-07 Score=71.07 Aligned_cols=97 Identities=10% Similarity=0.140 Sum_probs=75.0
Q ss_pred EecCC-CEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCC---EEEEeecCcceecCCcEEEEeec-CcE
Q psy5876 3 LRMRG-THIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGR---YVMSGVSLWKTKADTGYWQWSFQ-GKI 76 (143)
Q Consensus 3 ~SPdG-~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~---~lat~s~~~~~~~D~~i~iW~~~-g~~ 76 (143)
|=|-. -++.+++| |.++++||++|.+....|.. ..|++-+|||-.- +||+|. .|..|++-|+. |..
T Consensus 109 WyP~DtGmFtssSF--DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gt------r~~~VrLCDi~SGs~ 180 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSF--DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGT------RDVQVRLCDIASGSF 180 (397)
T ss_pred EeeecCceeecccc--cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEec------CCCcEEEEeccCCcc
Confidence 44433 36667775 89999999999887666643 5799999999654 456665 58899999995 777
Q ss_pred EEec--cCCcEEEEEEeeCCCee-eecCchhhHH
Q psy5876 77 IKRF--NSPTFCQLRWRPRPASL-LSKEQVDKIK 107 (143)
Q Consensus 77 l~~~--~~~~v~~l~wsP~~~~l-~s~s~d~~i~ 107 (143)
-+.+ |.+.|.++.|+|...++ +|++.|+.||
T Consensus 181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir 214 (397)
T KOG4283|consen 181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR 214 (397)
T ss_pred eeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence 7765 47799999999999865 5889999877
No 207
>KOG2106|consensus
Probab=98.50 E-value=9.1e-07 Score=74.34 Aligned_cols=95 Identities=12% Similarity=0.206 Sum_probs=74.0
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN 81 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~ 81 (143)
+-.|+...+++++ .|+.+++|+-...+-...+ ..++.++.|+|.| .+|.|+ ..+.-.+.|.+.+.+...+
T Consensus 375 a~hps~~q~~T~g--qdk~v~lW~~~k~~wt~~~-~d~~~~~~fhpsg-~va~Gt------~~G~w~V~d~e~~~lv~~~ 444 (626)
T KOG2106|consen 375 ATHPSKNQLLTCG--QDKHVRLWNDHKLEWTKII-EDPAECADFHPSG-VVAVGT------ATGRWFVLDTETQDLVTIH 444 (626)
T ss_pred EcCCChhheeecc--CcceEEEccCCceeEEEEe-cCceeEeeccCcc-eEEEee------ccceEEEEecccceeEEEE
Confidence 4578889999999 7999999993332222223 3688999999999 899998 4555668888766544433
Q ss_pred --CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 82 --SPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 82 --~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
..++..++|+|+|..|+-++.|..|
T Consensus 445 ~d~~~ls~v~ysp~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 445 TDNEQLSVVRYSPDGAFLAVGSHDNHI 471 (626)
T ss_pred ecCCceEEEEEcCCCCEEEEecCCCeE
Confidence 6789999999999999999999876
No 208
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=1.8e-06 Score=71.35 Aligned_cols=98 Identities=11% Similarity=0.128 Sum_probs=62.6
Q ss_pred CeEecCCCEEEEEecCCCC--eEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l 77 (143)
.+|||||++|+.... .+| .|.+||+.+++...-.. ........|||||+.|+..+... ....++++++.+...
T Consensus 248 ~~~SpDG~~la~~~~-~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~---g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 248 PAWSPDGSKLAFVLS-KDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG---GKPQIYKVNVNGGRA 323 (430)
T ss_pred eEECCCCCEEEEEEc-cCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCC---CCceEEEEECCCCCE
Confidence 379999999985432 234 68888988765432222 23456789999999998877310 123577777754333
Q ss_pred Eec--cCCcEEEEEEeeCCCeeeecCc
Q psy5876 78 KRF--NSPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 78 ~~~--~~~~v~~l~wsP~~~~l~s~s~ 102 (143)
... .........|+|+|+.|+-.+.
T Consensus 324 ~~lt~~~~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 324 ERVTFVGNYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred EEeecCCCCccceEECCCCCEEEEEEc
Confidence 322 2223345789999999886554
No 209
>KOG4283|consensus
Probab=98.49 E-value=8.8e-07 Score=70.49 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=73.0
Q ss_pred eEecCCC---EEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEE-EEeecCcceecCCcEEEEeec--
Q psy5876 2 KLRMRGT---HIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYV-MSGVSLWKTKADTGYWQWSFQ-- 73 (143)
Q Consensus 2 ~~SPdG~---~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~l-at~s~~~~~~~D~~i~iW~~~-- 73 (143)
+|||=.. .||+|. .+-.|++-|+.+|..-+++ |..+|..+.|||...|+ |||| .|+.+++||+.
T Consensus 150 amSp~a~sHcLiA~gt--r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgs------aDg~irlWDiRra 221 (397)
T KOG4283|consen 150 AMSPMAMSHCLIAAGT--RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGS------ADGAIRLWDIRRA 221 (397)
T ss_pred hcChhhhcceEEEEec--CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecC------CCceEEEEEeecc
Confidence 3455433 455555 5789999999998876665 34689999999999985 6666 69999999994
Q ss_pred CcEEEe----------------ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 74 GKIIKR----------------FNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 74 g~~l~~----------------~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
..++.. .+...|+.++|+.+|..+++.+-|..++
T Consensus 222 sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 222 SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR 271 (397)
T ss_pred cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence 222211 0123699999999999999998887776
No 210
>KOG0642|consensus
Probab=98.47 E-value=5.9e-07 Score=75.90 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=78.5
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECC--------CceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTG--------DFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS 71 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~--------~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~ 71 (143)
+|.|-..-|++|+ .||++.+|++. ..+++.++. ..+|.+++.++.|+++.+|+ .|++|+.|+
T Consensus 301 ~~~~sep~lit~s--ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg------~Dg~I~~w~ 372 (577)
T KOG0642|consen 301 AFHPSEPVLITAS--EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG------IDGTIRCWN 372 (577)
T ss_pred hcCCCCCeEEEec--cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec------cCceeeeec
Confidence 4667777899999 58999999983 245666663 36899999999999999999 699999994
Q ss_pred e-------cCc---EE---EeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 72 F-------QGK---II---KRFNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 72 ~-------~g~---~l---~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+ ++. .+ ..-+.+.||.+++|+....|++++.|+++|
T Consensus 373 ~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr 421 (577)
T KOG0642|consen 373 LPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVR 421 (577)
T ss_pred cCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEE
Confidence 4 122 11 122477899999999999999999999988
No 211
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=3.2e-06 Score=70.43 Aligned_cols=98 Identities=6% Similarity=-0.010 Sum_probs=63.6
Q ss_pred eEecCCCE-EEEEecC-CCCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876 2 KLRMRGTH-IVLAELR-DTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK 78 (143)
Q Consensus 2 ~~SPdG~~-las~~~~-~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~ 78 (143)
.|||||+. ++..++. .+..|.++|+.+++...-. .........|||||+.|+..... ..+..++++++.+....
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~---~g~~~Iy~~dl~~g~~~ 270 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAP---KGQPDIYLYDTNTKTLT 270 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEcc---CCCcEEEEEECCCCcEE
Confidence 69999996 6655543 2467999998887643322 22345678899999988766531 12456777787655444
Q ss_pred ecc--CCcEEEEEEeeCCCeeeecCc
Q psy5876 79 RFN--SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 79 ~~~--~~~v~~l~wsP~~~~l~s~s~ 102 (143)
... ........|+|||+.|+=.++
T Consensus 271 ~LT~~~~~d~~p~~SPDG~~I~F~Sd 296 (419)
T PRK04043 271 QITNYPGIDVNGNFVEDDKRIVFVSD 296 (419)
T ss_pred EcccCCCccCccEECCCCCEEEEEEC
Confidence 432 222345689999998875553
No 212
>KOG0322|consensus
Probab=98.47 E-value=2.3e-07 Score=72.60 Aligned_cols=64 Identities=11% Similarity=0.221 Sum_probs=55.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEe--eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN--AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF 72 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~--~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~ 72 (143)
+.+-|||+.+|++|. ||.||+|.-.++..+. ++|...|++++||||...+|.+| .|..|-+|++
T Consensus 257 vrIRpD~KIlATAGW--D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas------kD~rISLWkL 322 (323)
T KOG0322|consen 257 VRIRPDGKILATAGW--DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS------KDARISLWKL 322 (323)
T ss_pred eEEccCCcEEeeccc--CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc------CCceEEeeec
Confidence 356799999999997 8999999988877654 45567899999999999999999 7999999985
No 213
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=1.9e-06 Score=71.91 Aligned_cols=91 Identities=10% Similarity=0.110 Sum_probs=61.9
Q ss_pred eEecCCCEEEEEecC-CCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876 2 KLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR 79 (143)
Q Consensus 2 ~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~ 79 (143)
.|||||++|+..+.. ....|.+||+.+++...... ...+....|+|||++|+..+.. .....+++++++|.....
T Consensus 333 ~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~---~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 333 AWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGN---SNESELYLISLITKKTRK 409 (428)
T ss_pred eECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECC---CCCceEEEEECCCCCEEE
Confidence 699999999987642 12478999998776533222 2356789999999998865531 124568888987654443
Q ss_pred c--cCCcEEEEEEeeCCC
Q psy5876 80 F--NSPTFCQLRWRPRPA 95 (143)
Q Consensus 80 ~--~~~~v~~l~wsP~~~ 95 (143)
. ....+...+|+|.+.
T Consensus 410 Lt~~~g~~~~p~Ws~~~~ 427 (428)
T PRK01029 410 IVIGSGEKRFPSWGAFPS 427 (428)
T ss_pred eecCCCcccCceecCCCC
Confidence 3 234577889998764
No 214
>KOG0307|consensus
Probab=98.43 E-value=4.1e-07 Score=81.64 Aligned_cols=101 Identities=14% Similarity=0.269 Sum_probs=75.9
Q ss_pred CeEecCCC-EEEEEecC-CCCeEEEEECC---CceEEeeeccCceEEEEECCCC-CEEEEeecCcceecCCcEEEEee-c
Q psy5876 1 MKLRMRGT-HIVLAELR-DTGSLEFVDTG---DFSVMNAAEHHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQWSF-Q 73 (143)
Q Consensus 1 i~~SPdG~-~las~~~~-~dg~i~iWd~~---~~~~~~~~~~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~iW~~-~ 73 (143)
|+|+||+- .|++++-+ ..-.|.+||+. +...+.+.|..+|.+++|.|.+ ++++|++ .|+.+.+|+. +
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg------kD~~ii~wN~~t 285 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG------KDNRIICWNPNT 285 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc------CCCCeeEecCCC
Confidence 57999975 45555432 23489999965 2223334445689999999988 8888888 6999999999 5
Q ss_pred CcEEEecc--CCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876 74 GKIIKRFN--SPTFCQLRWRPRPA-SLLSKEQVDKIK 107 (143)
Q Consensus 74 g~~l~~~~--~~~v~~l~wsP~~~-~l~s~s~d~~i~ 107 (143)
|+.+..+. .+.+.++.|.|..+ .++..+-|+.|.
T Consensus 286 gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 286 GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred ceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 88898876 57899999999998 445556677765
No 215
>KOG4378|consensus
Probab=98.41 E-value=3e-06 Score=71.31 Aligned_cols=91 Identities=12% Similarity=0.290 Sum_probs=70.5
Q ss_pred CeEecCCC-EEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--E
Q psy5876 1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--I 76 (143)
Q Consensus 1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--~ 76 (143)
|+|||-.. .||+.| .|..|.+||+...+...... ..+.+.++|+|+|.||+.|+ ..+.+..||+.+. .
T Consensus 214 icfspsne~l~vsVG--~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~------s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 214 ICFSPSNEALLVSVG--YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN------SKGELIAYDMRSTKAP 285 (673)
T ss_pred ceecCCccceEEEec--ccceEEEeecccccccceeeecCCcceeeecCCceEEEeec------CCceEEEEecccCCCC
Confidence 68999766 556667 58999999998766554442 36889999999999999999 4788999999765 2
Q ss_pred E--EeccCCcEEEEEEeeCCCeeeec
Q psy5876 77 I--KRFNSPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 77 l--~~~~~~~v~~l~wsP~~~~l~s~ 100 (143)
+ ...+.+.|.+++|.|-+ .+++.
T Consensus 286 v~v~sah~~sVt~vafq~s~-tvltk 310 (673)
T KOG4378|consen 286 VAVRSAHDASVTRVAFQPSP-TVLTK 310 (673)
T ss_pred ceEeeecccceeEEEeeecc-eeeec
Confidence 3 34457789999999987 56553
No 216
>KOG2919|consensus
Probab=98.36 E-value=2.7e-06 Score=68.40 Aligned_cols=93 Identities=12% Similarity=0.198 Sum_probs=66.8
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC-ce---EEeeec------cCceEEEEECCCCC-EEEEeecCcceecCCcEEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FS---VMNAAE------HHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQ 69 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~---~~~~~~------~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~i 69 (143)
++|||||.+|.+|- ...|+++|+.. |. ...+.. ..-+++++|||-.. .+|.++- .+.+-|
T Consensus 164 L~Fs~DGeqlfaGy---krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY------~q~~gi 234 (406)
T KOG2919|consen 164 LQFSPDGEQLFAGY---KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY------GQRVGI 234 (406)
T ss_pred EEecCCCCeEeecc---cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecc------cceeee
Confidence 58999999999874 68999999852 22 111221 12468999999655 7888873 555556
Q ss_pred EeecC-cEEEec--cCCcEEEEEEeeCCCeeeecCc
Q psy5876 70 WSFQG-KIIKRF--NSPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 70 W~~~g-~~l~~~--~~~~v~~l~wsP~~~~l~s~s~ 102 (143)
+.-.+ +.++.. +.+.|.++.|.|+|+.|.+|+.
T Consensus 235 y~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR 270 (406)
T KOG2919|consen 235 YNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR 270 (406)
T ss_pred EecCCCCceeeecccCCCeeeEEeccCcCeeccccc
Confidence 65543 345443 5789999999999999999975
No 217
>KOG1272|consensus
Probab=98.35 E-value=9.2e-07 Score=73.60 Aligned_cols=91 Identities=13% Similarity=0.183 Sum_probs=69.9
Q ss_pred ecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EEEec
Q psy5876 4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-IIKRF 80 (143)
Q Consensus 4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l~~~ 80 (143)
+|-.-.+-+|. .+|+|.+|..+..+.+.+. |..+|++|++.|+|+|+||.+ .|+.++|||+.+- .++..
T Consensus 260 NP~NaVih~Gh--snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG------~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 260 NPYNAVIHLGH--SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG------LDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred CCccceEEEcC--CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc------cccceeEeeecccccccee
Confidence 45555666666 5899999998887765543 346899999999999999999 7999999999643 45544
Q ss_pred c-CCcEEEEEEeeCCCeeeecCc
Q psy5876 81 N-SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 81 ~-~~~v~~l~wsP~~~~l~s~s~ 102 (143)
. ..+...+++|..|-.-++.+.
T Consensus 332 ~tp~~a~~ls~SqkglLA~~~G~ 354 (545)
T KOG1272|consen 332 RTPHPASNLSLSQKGLLALSYGD 354 (545)
T ss_pred ecCCCccccccccccceeeecCC
Confidence 3 567888899988776666554
No 218
>KOG1523|consensus
Probab=98.34 E-value=3.8e-06 Score=67.20 Aligned_cols=97 Identities=12% Similarity=0.289 Sum_probs=75.8
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCC---ceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCc
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGD---FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGK 75 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~---~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~ 75 (143)
+|++|++.+|++- .+..|.||.... .+...++ |...++.|.|+|-+..|+||+ .|..-++|.. .|.
T Consensus 17 Awn~drt~iAv~~--~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs------~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 17 AWNSDRTQIAVSP--NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS------HDRNAYVWTQPSGG 88 (361)
T ss_pred eecCCCceEEecc--CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEcc------CCCCccccccCCCC
Confidence 7999999999987 467899999664 3455554 235799999999999999999 4888889998 543
Q ss_pred E----EEec-cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 76 I----IKRF-NSPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 76 ~----l~~~-~~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
. +... ....+..+.|+|....++.+|.-+.|
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~i 124 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLI 124 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEE
Confidence 2 2222 35578999999999999998876655
No 219
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.32 E-value=2.6e-06 Score=69.07 Aligned_cols=94 Identities=14% Similarity=0.210 Sum_probs=63.3
Q ss_pred ecCCCEEEEEecC-------CCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876 4 RMRGTHIVLAELR-------DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK 75 (143)
Q Consensus 4 SPdG~~las~~~~-------~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~ 75 (143)
||||++++..... ..+.+.++|+++++...... ...+....|||||+++|-.. ++.+++++..+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-------~~nly~~~~~~~ 73 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-------DNNLYLRDLATG 73 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-------TTEEEEESSTTS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-------cCceEEEECCCC
Confidence 8999999984210 14789999999976654433 35688999999999999988 778888887433
Q ss_pred EEEecc--------------------CCcEEEEEEeeCCCeeeecCchh
Q psy5876 76 IIKRFN--------------------SPTFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 76 ~l~~~~--------------------~~~v~~l~wsP~~~~l~s~s~d~ 104 (143)
...... ...-..+.|||||+.|+....|.
T Consensus 74 ~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~ 122 (353)
T PF00930_consen 74 QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE 122 (353)
T ss_dssp EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC
Confidence 222211 11235688999999999876544
No 220
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.31 E-value=1.7e-05 Score=64.12 Aligned_cols=97 Identities=11% Similarity=0.195 Sum_probs=68.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECC--Cce--EEeeec-------c-CceEEEEECCCCCEEEEeecCcceecCCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTG--DFS--VMNAAE-------H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYW 68 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~--~~~--~~~~~~-------~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~ 68 (143)
+.|+|||+++.+... .+++|.+++.+ +++ .+.... . .....|+.||||++|.++.. ..+.|.
T Consensus 197 ~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr-----~~~sI~ 270 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR-----GSNSIS 270 (345)
T ss_dssp EEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-----TTTEEE
T ss_pred EEEcCCcCEEEEecC-CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-----cCCEEE
Confidence 479999999987765 58999999977 443 222221 1 25789999999999988774 588999
Q ss_pred EEeec---CcEE--Eecc--CCcEEEEEEeeCCCeeeecCch
Q psy5876 69 QWSFQ---GKII--KRFN--SPTFCQLRWRPRPASLLSKEQV 103 (143)
Q Consensus 69 iW~~~---g~~l--~~~~--~~~v~~l~wsP~~~~l~s~s~d 103 (143)
+|+++ |++- .... ...=.+++++|+|++|+.+.++
T Consensus 271 vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred EEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 99993 4432 2222 3457899999999999977643
No 221
>KOG4227|consensus
Probab=98.30 E-value=2.9e-06 Score=69.82 Aligned_cols=98 Identities=11% Similarity=0.146 Sum_probs=78.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC------ceEEe--eecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD------FSVMN--AAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS 71 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~------~~~~~--~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~ 71 (143)
|.||.+|++||+|| +|-.+++|.++. .+.+. ..+| ..|.+++|....+++.+|. .+++|..-|
T Consensus 62 lqFS~N~~~L~SGG--DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~------~~~~VI~HD 133 (609)
T KOG4227|consen 62 LQFSHNDRFLASGG--DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE------RWGTVIKHD 133 (609)
T ss_pred eeeccCCeEEeecC--CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC------CcceeEeee
Confidence 57999999999999 789999999772 34443 2334 5799999999999999999 689998899
Q ss_pred ecC-cEEEecc----CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 72 FQG-KIIKRFN----SPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 72 ~~g-~~l~~~~----~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
+.. +.|.-.. ...|+.+.-+|....+++.++++.|
T Consensus 134 iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V 173 (609)
T KOG4227|consen 134 IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLV 173 (609)
T ss_pred cccceeeeeecccCcccceeecccCCCCceEEEEecCceE
Confidence 954 4454332 3479999999999999999888754
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.30 E-value=9.3e-06 Score=66.66 Aligned_cols=88 Identities=16% Similarity=0.266 Sum_probs=64.8
Q ss_pred CCEEEEEecCCCCeEEEEECCCceEEeeecc-Cce-EEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-C
Q psy5876 7 GTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQA-TDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-S 82 (143)
Q Consensus 7 G~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v-~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-~ 82 (143)
++++++... .+|.|.+.|..+.+.+.+++. ..+ ..+.++|||||+.+++ .|+.+.++|+ +++.+.+.. .
T Consensus 5 ~~l~~V~~~-~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~------rdg~vsviD~~~~~~v~~i~~G 77 (369)
T PF02239_consen 5 GNLFYVVER-GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN------RDGTVSVIDLATGKVVATIKVG 77 (369)
T ss_dssp GGEEEEEEG-GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE------TTSEEEEEETTSSSEEEEEE-S
T ss_pred ccEEEEEec-CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc------CCCeEEEEECCcccEEEEEecC
Confidence 345555544 479999999999988888753 333 5678999999999988 5899999999 577787765 5
Q ss_pred CcEEEEEEeeCCCeeeecC
Q psy5876 83 PTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 83 ~~v~~l~wsP~~~~l~s~s 101 (143)
..-..++++|||++++.+.
T Consensus 78 ~~~~~i~~s~DG~~~~v~n 96 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVAN 96 (369)
T ss_dssp SEEEEEEE--TTTEEEEEE
T ss_pred CCcceEEEcCCCCEEEEEe
Confidence 5678899999999999765
No 223
>KOG4328|consensus
Probab=98.29 E-value=2e-06 Score=71.33 Aligned_cols=97 Identities=14% Similarity=0.335 Sum_probs=72.8
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCceE-Ee--eeccCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeec---Cc
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDFSV-MN--AAEHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQ---GK 75 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~-~~--~~~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~---g~ 75 (143)
|+.+.+.++.++ .=|.+.+||..+... .. ..+...|++++++|.-. +||||| .|.+.+|||.. ++
T Consensus 287 ~~~e~~~vl~~~--~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s------~D~T~kIWD~R~l~~K 358 (498)
T KOG4328|consen 287 FSAESRSVLFGD--NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS------LDQTAKIWDLRQLRGK 358 (498)
T ss_pred ccCCCccEEEee--cccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc------cCcceeeeehhhhcCC
Confidence 455555555555 247899999876432 11 22345899999999876 678888 79999999983 44
Q ss_pred E---EEec-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 76 I---IKRF-NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 76 ~---l~~~-~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
. |+.. |...|.+..|||.+-.|+|.++|.+||
T Consensus 359 ~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR 394 (498)
T KOG4328|consen 359 ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR 394 (498)
T ss_pred CCcceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence 3 5554 467899999999999999999999887
No 224
>KOG0307|consensus
Probab=98.28 E-value=7.1e-07 Score=80.16 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=69.3
Q ss_pred CeEecCCC-EEEEEecCCCCeEEEEECCCceEEeeec----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876 1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFSVMNAAE----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK 75 (143)
Q Consensus 1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~~~~~~~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~ 75 (143)
+.|+|.+. .||+|+ .||.|.|||+++.+.-.+.. ...|.+++|+..-++|.+..+ .++..-|||+..+
T Consensus 122 LDfN~~q~nlLASGa--~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s-----~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGA--DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGS-----PSGRAVIWDLRKK 194 (1049)
T ss_pred eeccccCCceeeccC--CCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccC-----CCCCceeccccCC
Confidence 35788777 888888 69999999999765544432 246999999998776544442 4668889999755
Q ss_pred -EEEec--cC--CcEEEEEEeeCCC-eeeecCchh
Q psy5876 76 -IIKRF--NS--PTFCQLRWRPRPA-SLLSKEQVD 104 (143)
Q Consensus 76 -~l~~~--~~--~~v~~l~wsP~~~-~l~s~s~d~ 104 (143)
.+-++ +. -.+..++|+|+.. .|+.+++|.
T Consensus 195 ~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd 229 (1049)
T KOG0307|consen 195 KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD 229 (1049)
T ss_pred CcccccccCCCccceeeeeeCCCCceeeeeecCCC
Confidence 34333 22 3588999999984 566666655
No 225
>KOG4328|consensus
Probab=98.22 E-value=4.4e-06 Score=69.40 Aligned_cols=96 Identities=10% Similarity=0.156 Sum_probs=67.7
Q ss_pred CeEecCCC-EEEEEecCCCCeEEEEECCCce-----EEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFS-----VMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~-----~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
|+++|-.. +||+|| .|++.+|||+.... .+.+.+| ..|.++.|||+|-.|+|.+ .|+.|+|||..
T Consensus 328 v~~NP~~p~~laT~s--~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~------~D~~IRv~dss 399 (498)
T KOG4328|consen 328 VALNPVCPWFLATAS--LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC------QDNEIRVFDSS 399 (498)
T ss_pred eecCCCCchheeecc--cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec------cCCceEEeecc
Confidence 35566554 678888 69999999987421 3555555 5799999999999999998 69999999983
Q ss_pred --Cc---EEEe-cc---C-C--cEEEEEEeeCCCeeeecCchh
Q psy5876 74 --GK---IIKR-FN---S-P--TFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 74 --g~---~l~~-~~---~-~--~v~~l~wsP~~~~l~s~s~d~ 104 (143)
+. .+.. .| . . .....+|.|+-..++.+-.-.
T Consensus 400 ~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r 442 (498)
T KOG4328|consen 400 CISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPR 442 (498)
T ss_pred cccccCCccceeeccCcccccccchhheeCCCccEEEEeccCc
Confidence 11 1111 12 1 1 245679999999888875433
No 226
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.22 E-value=8.1e-06 Score=69.48 Aligned_cols=89 Identities=18% Similarity=0.309 Sum_probs=65.5
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc----E
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK----I 76 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~----~ 76 (143)
++||+.+.|+.|. .||.|.+||..++.....-.....+.++|+|+|..|++|+ .-+.+.+||.. +- +
T Consensus 266 a~sp~E~kLvlGC--~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s------~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 266 ARSPSEDKLVLGC--EDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGS------EQGELQCFDMALSPIKMQL 337 (545)
T ss_pred ecCcccceEEEEe--cCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEc------CCceEEEEEeecCccceee
Confidence 6899999999999 6999999998876433332235678999999999999999 47899999984 21 1
Q ss_pred EEec--------------cCCcEEEEEEeeCCCeee
Q psy5876 77 IKRF--------------NSPTFCQLRWRPRPASLL 98 (143)
Q Consensus 77 l~~~--------------~~~~v~~l~wsP~~~~l~ 98 (143)
+... +...+-.+.|.|.++..-
T Consensus 338 lsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~ 373 (545)
T PF11768_consen 338 LSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSS 373 (545)
T ss_pred ccccCCCccEEeeehhccCcchhheeEeccCCCccc
Confidence 1110 123567888887777543
No 227
>KOG2445|consensus
Probab=98.21 E-value=1.2e-05 Score=64.29 Aligned_cols=99 Identities=11% Similarity=0.211 Sum_probs=69.3
Q ss_pred eEecC---CCEEEEEecC---CCCeEEEEECCC-c-e--EEeeec--cCceEEEEECCC-CC---EEEEeecCcceecCC
Q psy5876 2 KLRMR---GTHIVLAELR---DTGSLEFVDTGD-F-S--VMNAAE--HHQATDVEWDPT-GR---YVMSGVSLWKTKADT 65 (143)
Q Consensus 2 ~~SPd---G~~las~~~~---~dg~i~iWd~~~-~-~--~~~~~~--~~~v~~i~wsPd-G~---~lat~s~~~~~~~D~ 65 (143)
+|+|. ..+||+|+.+ .-+.+.||..+. + + .+.++. ..+|++|+|+|+ || .||+++ .|+
T Consensus 176 sWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~------kDg 249 (361)
T KOG2445|consen 176 SWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT------KDG 249 (361)
T ss_pred eeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee------cCc
Confidence 45543 3578888732 014889998653 2 2 333332 358999999996 44 578888 576
Q ss_pred cEEEEeecCcE---------------------EEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 66 GYWQWSFQGKI---------------------IKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 66 ~i~iW~~~g~~---------------------l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
|+||++.+.+ +..+ |...|+.+.|+--|..|.|.++|+.+|
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence 9999986411 1112 244899999999999999999999998
No 228
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.19 E-value=3.5e-06 Score=70.82 Aligned_cols=95 Identities=14% Similarity=0.193 Sum_probs=72.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcce---------ecCCcEEEEe
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKT---------KADTGYWQWS 71 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~---------~~D~~i~iW~ 71 (143)
++|||.|++|++.. -..|.+|+...+..+..+.|..|..+.|||.|+||.|.+..++. ..++.+.+||
T Consensus 38 ~~~SP~G~~l~~~~---~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd 114 (561)
T COG5354 38 VSESPLGTYLFSEH---AAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWD 114 (561)
T ss_pred eeecCcchheehhh---ccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEe
Confidence 47999999999976 34689999887766777778899999999999999999986641 2355789999
Q ss_pred ec-CcEEEecc--CCc--EE-EEEEeeCCCeee
Q psy5876 72 FQ-GKIIKRFN--SPT--FC-QLRWRPRPASLL 98 (143)
Q Consensus 72 ~~-g~~l~~~~--~~~--v~-~l~wsP~~~~l~ 98 (143)
.. |.++..+. ..+ .+ -+.|+-+..+++
T Consensus 115 ~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A 147 (561)
T COG5354 115 IASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA 147 (561)
T ss_pred ccCceeEeeccccCCcccccceeeeeecchhhh
Confidence 95 66676653 222 34 677887776554
No 229
>KOG1188|consensus
Probab=98.19 E-value=8.9e-06 Score=65.57 Aligned_cols=96 Identities=15% Similarity=0.249 Sum_probs=65.1
Q ss_pred CCEEEEEecCCCCeEEEEECCCceEEee--e-ccC--ceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cE-EEe
Q psy5876 7 GTHIVLAELRDTGSLEFVDTGDFSVMNA--A-EHH--QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KI-IKR 79 (143)
Q Consensus 7 G~~las~~~~~dg~i~iWd~~~~~~~~~--~-~~~--~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~-l~~ 79 (143)
+.-+.+|+ .||+|++||+.+...... . .+. +..+++-.-.++.+++|+.- .+.+-.+.+||+.. ++ +..
T Consensus 84 ~h~v~s~s--sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~--~~s~A~v~lwDvR~~qq~l~~ 159 (376)
T KOG1188|consen 84 PHGVISCS--SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTEL--TRSDASVVLWDVRSEQQLLRQ 159 (376)
T ss_pred CCeeEEec--cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccc--ccCceEEEEEEeccccchhhh
Confidence 33566676 599999999886543222 1 222 45555555577788887531 12466889999953 33 443
Q ss_pred ---ccCCcEEEEEEeeCC-CeeeecCchhhH
Q psy5876 80 ---FNSPTFCQLRWRPRP-ASLLSKEQVDKI 106 (143)
Q Consensus 80 ---~~~~~v~~l~wsP~~-~~l~s~s~d~~i 106 (143)
.|.+.|.++.|+|.. ..|+|||-|+.|
T Consensus 160 ~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 160 LNESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred hhhhccCcceeEEecCCCCCeEEeecccceE
Confidence 357899999999976 578899999866
No 230
>KOG0650|consensus
Probab=98.17 E-value=7.8e-06 Score=69.99 Aligned_cols=60 Identities=17% Similarity=0.448 Sum_probs=51.8
Q ss_pred EEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-CCcEEEEEEeeCCCe
Q psy5876 31 VMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-SPTFCQLRWRPRPAS 96 (143)
Q Consensus 31 ~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-~~~v~~l~wsP~~~~ 96 (143)
.+..+|..-|.+|+-+|.|.+||+|+ .|++++||.+ +|+|+.... ...|.+++|+|.+..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGs------dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~ 455 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGS------DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDL 455 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecC------CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCc
Confidence 34455556799999999999999999 6999999999 799999887 568999999999863
No 231
>KOG3914|consensus
Probab=98.12 E-value=7.1e-06 Score=66.99 Aligned_cols=72 Identities=13% Similarity=0.261 Sum_probs=56.2
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee---ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA---EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~---~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~ 76 (143)
|+||||+++|.++. .|+.|++=.....-.+..+ |..-|+.++.-| ++.|+++| .|+++++||+ +|++
T Consensus 157 VavS~D~~~IitaD--RDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~s------GD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 157 VAVSPDDQFIITAD--RDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGS------GDKTLRLWDITSGKL 227 (390)
T ss_pred eeecCCCCEEEEec--CCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecC------CCCcEEEEecccCCc
Confidence 58999999999998 6999999776654444443 335688888885 45689998 6999999999 6988
Q ss_pred EEecc
Q psy5876 77 IKRFN 81 (143)
Q Consensus 77 l~~~~ 81 (143)
++.++
T Consensus 228 L~t~d 232 (390)
T KOG3914|consen 228 LDTCD 232 (390)
T ss_pred ccccc
Confidence 87654
No 232
>KOG0974|consensus
Probab=98.10 E-value=1.2e-05 Score=72.01 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=75.2
Q ss_pred EecCCCEEEEEecCCCCeEEEEECC-CceEE-eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE-
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTG-DFSVM-NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK- 78 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~-~~~~~-~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~- 78 (143)
+|++--++++|+ .-|.|.+|+.. +.+.. ...|...|.++.||-||+|+++.| .|.++++|+++ ++.+.
T Consensus 141 ~s~~~~~i~~gs--v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~S------dDRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 141 DSAEELYIASGS--VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVS------DDRSIRLWPIDSREVLGC 212 (967)
T ss_pred ccCcEEEEEecc--ccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEe------cCcceeeeecccccccCc
Confidence 567777889887 46889999965 22333 334446799999999999999999 69999999996 33333
Q ss_pred e--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 79 R--FNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 79 ~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
. -|..+|+.+.|.|. .++|+++|.+-+
T Consensus 213 ~~fgHsaRvw~~~~~~n--~i~t~gedctcr 241 (967)
T KOG0974|consen 213 TGFGHSARVWACCFLPN--RIITVGEDCTCR 241 (967)
T ss_pred ccccccceeEEEEeccc--eeEEeccceEEE
Confidence 1 25789999999999 999999998876
No 233
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.10 E-value=2.5e-05 Score=65.64 Aligned_cols=92 Identities=20% Similarity=0.269 Sum_probs=61.0
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceE--EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSV--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR 79 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~ 79 (143)
.-||||++++++. ....+.+.|++++.. +.+.+...|+...|||++|+||=+-...- .-..|+++|..|..+..
T Consensus 408 ~vs~dGK~~vvaN--dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy--~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 408 KVSPDGKKVVVAN--DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY--YTQSIKLYDMDGGKIYD 483 (668)
T ss_pred EEcCCCcEEEEEc--CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcce--eeeeEEEEecCCCeEEE
Confidence 5689999999997 467777778887754 33444467999999999999998763211 12367788887765544
Q ss_pred cc--CCcEEEEEEeeCCCee
Q psy5876 80 FN--SPTFCQLRWRPRPASL 97 (143)
Q Consensus 80 ~~--~~~v~~l~wsP~~~~l 97 (143)
.. ...=++=+|-|++..|
T Consensus 484 vTT~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 484 VTTPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred ecCCcccccCcccCCCCcEE
Confidence 32 2222334555665544
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.08 E-value=0.00011 Score=59.40 Aligned_cols=94 Identities=15% Similarity=0.229 Sum_probs=65.2
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC-ceEEee---e------------ccCceEEEEECCCCCEEEEeecCcceecC
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FSVMNA---A------------EHHQATDVEWDPTGRYVMSGVSLWKTKAD 64 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~~~~~---~------------~~~~v~~i~wsPdG~~lat~s~~~~~~~D 64 (143)
++.+|+|++|+++.. .+|.|.+++++. +.+... . ......++.|+|||+++++..- ..
T Consensus 92 i~~~~~g~~l~vany-~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-----G~ 165 (345)
T PF10282_consen 92 IAVDPDGRFLYVANY-GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-----GA 165 (345)
T ss_dssp EEECTTSSEEEEEET-TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-----TT
T ss_pred EEEecCCCEEEEEEc-cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-----CC
Confidence 467999999999988 489999999875 432211 1 1134678999999999988763 35
Q ss_pred CcEEEEeecCc---EEE----ecc-CCcEEEEEEeeCCCeeeec
Q psy5876 65 TGYWQWSFQGK---IIK----RFN-SPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 65 ~~i~iW~~~g~---~l~----~~~-~~~v~~l~wsP~~~~l~s~ 100 (143)
..|.+|+++.. +.. ... ...=.++.|+|+++++...
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~ 209 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVV 209 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEE
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEe
Confidence 68999999532 322 122 4577899999999987544
No 235
>KOG0321|consensus
Probab=98.06 E-value=1.3e-05 Score=68.89 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=67.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEee----eccCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeec--
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA----AEHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQ-- 73 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~----~~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~-- 73 (143)
+.|.|-...|++++ .|.++++||+++.+++-. .|...+.++||.|+.. .|++|+ .|+.|.|||+.
T Consensus 106 l~wapge~~lVsas--GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg------RDg~illWD~R~n 177 (720)
T KOG0321|consen 106 LKWAPGESLLVSAS--GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGG------RDGEILLWDCRCN 177 (720)
T ss_pred eccCCCceeEEEcc--CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeecc------CCCcEEEEEEecc
Confidence 46889333555555 599999999997665443 3445799999999888 567777 69999999984
Q ss_pred Cc--------EE------------------Eec--cCCcEEE---EEEeeCCCeeeecCc-hhhHH
Q psy5876 74 GK--------II------------------KRF--NSPTFCQ---LRWRPRPASLLSKEQ-VDKIK 107 (143)
Q Consensus 74 g~--------~l------------------~~~--~~~~v~~---l~wsP~~~~l~s~s~-d~~i~ 107 (143)
+. ++ ++. +...|.+ +-+.-|...|+|++. |+.||
T Consensus 178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iK 243 (720)
T KOG0321|consen 178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIK 243 (720)
T ss_pred chhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceE
Confidence 30 00 000 0122333 445558889999888 88776
No 236
>KOG0290|consensus
Probab=98.05 E-value=3.2e-05 Score=61.51 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=65.5
Q ss_pred CCEEEEEecCCCCeEEEEECCCceE--Eee---eccCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeec----CcE
Q psy5876 7 GTHIVLAELRDTGSLEFVDTGDFSV--MNA---AEHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQ----GKI 76 (143)
Q Consensus 7 G~~las~~~~~dg~i~iWd~~~~~~--~~~---~~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~----g~~ 76 (143)
=++|.+++ .|-++.|||++++.. +.+ -|..+|.+|+|+.+|+ .||+.+ .|+.+++||+. ...
T Consensus 163 p~~igtSS--iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvg------aDGSvRmFDLR~leHSTI 234 (364)
T KOG0290|consen 163 PNLIGTSS--IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVG------ADGSVRMFDLRSLEHSTI 234 (364)
T ss_pred cceeEeec--ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEec------CCCcEEEEEecccccceE
Confidence 35888888 699999999987521 221 2447899999999887 567777 79999999995 235
Q ss_pred EEecc--CCcEEEEEEeeCCC-eeeecCch
Q psy5876 77 IKRFN--SPTFCQLRWRPRPA-SLLSKEQV 103 (143)
Q Consensus 77 l~~~~--~~~v~~l~wsP~~~-~l~s~s~d 103 (143)
+++.. ..++..++|+++.+ +++|-.+|
T Consensus 235 IYE~p~~~~pLlRLswnkqDpnymATf~~d 264 (364)
T KOG0290|consen 235 IYEDPSPSTPLLRLSWNKQDPNYMATFAMD 264 (364)
T ss_pred EecCCCCCCcceeeccCcCCchHHhhhhcC
Confidence 66653 56899999988764 55565444
No 237
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.05 E-value=1.3e-05 Score=67.12 Aligned_cols=96 Identities=13% Similarity=0.275 Sum_probs=61.7
Q ss_pred eEecCCCEEEEEecCCCCeEEEE--ECCCceEEeeeccC-ceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFV--DTGDFSVMNAAEHH-QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK 78 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iW--d~~~~~~~~~~~~~-~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~ 78 (143)
+|||||++||.+.. .||...|| |+.+.....-.+.. .-+.-.|||||++|+-.|+-. .-..|.+.+.+|....
T Consensus 244 ~fspDG~~l~f~~~-rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~---G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 244 AFSPDGSKLAFSSS-RDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRG---GRPQIYLYDLEGSQVT 319 (425)
T ss_pred cCCCCCCEEEEEEC-CCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCC---CCcceEEECCCCCcee
Confidence 69999999999876 46765555 55443322211222 234779999999999998521 1124666777777554
Q ss_pred ec--cCCcEEEEEEeeCCCeeeecC
Q psy5876 79 RF--NSPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 79 ~~--~~~~v~~l~wsP~~~~l~s~s 101 (143)
.. ....-..-.|+|||..|+-.+
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEe
Confidence 33 222222678999999999766
No 238
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.04 E-value=2.2e-05 Score=71.29 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=45.2
Q ss_pred eEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc-CC-cEEEEEEeeCCCeeeecC
Q psy5876 40 ATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN-SP-TFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 40 v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~-~~-~v~~l~wsP~~~~l~s~s 101 (143)
-..|+|-.||+|||+.+-...-..-..++||+-+|.+..... .+ --..++|+|.|..|++.-
T Consensus 212 ~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q 275 (928)
T PF04762_consen 212 RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQ 275 (928)
T ss_pred ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence 457899999999999984211001247899999998776543 33 345899999999888864
No 239
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.03 E-value=6.4e-05 Score=69.21 Aligned_cols=100 Identities=10% Similarity=0.037 Sum_probs=71.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEe-e------------ec----------cCceEEEEECCCCCEEEEeec
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN-A------------AE----------HHQATDVEWDPTGRYVMSGVS 57 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~-~------------~~----------~~~v~~i~wsPdG~~lat~s~ 57 (143)
|+|+|||++|.++.. .++.|++||++++.... . +. ......++++|+|+.+++-+
T Consensus 745 IavspdG~~LYVADs-~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs- 822 (1057)
T PLN02919 745 ISLSPDLKELYIADS-ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS- 822 (1057)
T ss_pred EEEeCCCCEEEEEEC-CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC-
Confidence 578999997776654 47899999988654211 1 00 01246899999999777776
Q ss_pred CcceecCCcEEEEeecCcEEEecc----------------CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 58 LWKTKADTGYWQWSFQGKIIKRFN----------------SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 58 ~~~~~~D~~i~iW~~~g~~l~~~~----------------~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.++.|++||.++..+.... .+.-..++++|+|+.+++.+.+..|+
T Consensus 823 -----~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 823 -----YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred -----CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 5889999999765443211 12456899999999999988777776
No 240
>KOG3881|consensus
Probab=98.01 E-value=4.3e-05 Score=62.52 Aligned_cols=98 Identities=9% Similarity=0.193 Sum_probs=77.5
Q ss_pred eEecC--CCEEEEEecCCCCeEEEEECCCce-EEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-
Q psy5876 2 KLRMR--GTHIVLAELRDTGSLEFVDTGDFS-VMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK- 75 (143)
Q Consensus 2 ~~SPd--G~~las~~~~~dg~i~iWd~~~~~-~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~- 75 (143)
.|=|. .+.||+++ .-+.+++||+..++ ++..+. ..+++++.-.|+|.+|.+|. .-+.+..||..++
T Consensus 209 ~Fl~g~~~~~fat~T--~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn------~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 209 RFLEGSPNYKFATIT--RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN------TKGQLAKFDLRGGK 280 (412)
T ss_pred eecCCCCCceEEEEe--cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec------ccchhheecccCce
Confidence 45444 67888887 57999999998654 455553 46899999999999999998 4678889999655
Q ss_pred EEEe-cc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 76 IIKR-FN--SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 76 ~l~~-~~--~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
++.. +. ...+.++.-+|.++.|++++-|..+|
T Consensus 281 l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 281 LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred eeccccCCccCCcceEEEcCCCceEEeeccceeEE
Confidence 4433 22 56899999999999999999998766
No 241
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.97 E-value=0.00014 Score=59.54 Aligned_cols=75 Identities=9% Similarity=0.060 Sum_probs=57.4
Q ss_pred EecCCCEEEEEecC--------CCCeEEEEECCCceEEeeecc---------CceEEEEECCCCCEEEEeecCcceecCC
Q psy5876 3 LRMRGTHIVLAELR--------DTGSLEFVDTGDFSVMNAAEH---------HQATDVEWDPTGRYVMSGVSLWKTKADT 65 (143)
Q Consensus 3 ~SPdG~~las~~~~--------~dg~i~iWd~~~~~~~~~~~~---------~~v~~i~wsPdG~~lat~s~~~~~~~D~ 65 (143)
+||||+.|.++... .+..|.+||+.+++.+.+.+. ......++||||++|....-. .++
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~----p~~ 128 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS----PSP 128 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC----CCC
Confidence 79999999888740 268999999999988876542 123488999999999877631 378
Q ss_pred cEEEEeec-CcEEEecc
Q psy5876 66 GYWQWSFQ-GKIIKRFN 81 (143)
Q Consensus 66 ~i~iW~~~-g~~l~~~~ 81 (143)
.+-+.|+. ++.+.+..
T Consensus 129 ~V~VvD~~~~kvv~ei~ 145 (352)
T TIGR02658 129 AVGVVDLEGKAFVRMMD 145 (352)
T ss_pred EEEEEECCCCcEEEEEe
Confidence 99999995 66666554
No 242
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.96 E-value=1.3e-05 Score=44.09 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=21.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVD 25 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd 25 (143)
|+|+|++++|++++ .|++|++||
T Consensus 17 i~~~~~~~~~~s~~--~D~~i~vwd 39 (39)
T PF00400_consen 17 IAWSPDGNFLASGS--SDGTIRVWD 39 (39)
T ss_dssp EEEETTSSEEEEEE--TTSEEEEEE
T ss_pred EEEecccccceeeC--CCCEEEEEC
Confidence 57999999999999 699999998
No 243
>KOG0300|consensus
Probab=97.93 E-value=6.1e-05 Score=60.75 Aligned_cols=95 Identities=11% Similarity=0.172 Sum_probs=70.3
Q ss_pred ecCCCEEEEEecCCCCeEEEEECCC-ceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--EEE
Q psy5876 4 RMRGTHIVLAELRDTGSLEFVDTGD-FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--IIK 78 (143)
Q Consensus 4 SPdG~~las~~~~~dg~i~iWd~~~-~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--~l~ 78 (143)
.|+.+.+++++ .|.+.++||... ..-+..| |...|+++.|..|.+ +++|| .|.+|+|||+... .|.
T Consensus 323 HptQrLVvTsS--rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgS------DDrTvKvWdLrNMRsplA 393 (481)
T KOG0300|consen 323 HPTQRLVVTSS--RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGS------DDRTVKVWDLRNMRSPLA 393 (481)
T ss_pred CCcceEEEEec--cCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecC------CCceEEEeeeccccCcce
Confidence 58888888888 699999999763 2333333 446799999998875 78888 5999999999643 455
Q ss_pred ecc-CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 79 RFN-SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 79 ~~~-~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
... ...++.++.+-.++.|+-.-+...||
T Consensus 394 TIRtdS~~NRvavs~g~~iIAiPhDNRqvR 423 (481)
T KOG0300|consen 394 TIRTDSPANRVAVSKGHPIIAIPHDNRQVR 423 (481)
T ss_pred eeecCCccceeEeecCCceEEeccCCceEE
Confidence 554 55788888887777777666665553
No 244
>KOG0290|consensus
Probab=97.91 E-value=4.5e-05 Score=60.72 Aligned_cols=97 Identities=13% Similarity=0.226 Sum_probs=69.5
Q ss_pred CeEecCCC-----EEEEEecCCCCeEEEEECCC--ce--E---Eeee---c-cCceEEEEECC-CCCEEEEeecCcceec
Q psy5876 1 MKLRMRGT-----HIVLAELRDTGSLEFVDTGD--FS--V---MNAA---E-HHQATDVEWDP-TGRYVMSGVSLWKTKA 63 (143)
Q Consensus 1 i~~SPdG~-----~las~~~~~dg~i~iWd~~~--~~--~---~~~~---~-~~~v~~i~wsP-dG~~lat~s~~~~~~~ 63 (143)
+.|.|+.. .||+++ -.+|+|.+.. .+ + +... + ..++++..|.- |=++|.++| .
T Consensus 102 ~~wiPd~~g~~pdlLATs~----D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS------i 171 (364)
T KOG0290|consen 102 LMWIPDSKGVYPDLLATSS----DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS------I 171 (364)
T ss_pred eEecCCccccCcchhhccc----CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec------c
Confidence 45888763 677765 4799999873 11 1 1111 1 24789999986 566788877 7
Q ss_pred CCcEEEEeec-Cc--EEEe---ccCCcEEEEEEeeCC-CeeeecCchhhHH
Q psy5876 64 DTGYWQWSFQ-GK--IIKR---FNSPTFCQLRWRPRP-ASLLSKEQVDKIK 107 (143)
Q Consensus 64 D~~i~iW~~~-g~--~l~~---~~~~~v~~l~wsP~~-~~l~s~s~d~~i~ 107 (143)
|.+..|||++ |. .+.+ .|..+|++++|.-.+ ..++|.+.|+.+|
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvR 222 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVR 222 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEE
Confidence 9999999995 41 1222 357799999999876 5678999999998
No 245
>KOG0321|consensus
Probab=97.86 E-value=8.4e-05 Score=64.11 Aligned_cols=97 Identities=15% Similarity=0.230 Sum_probs=68.3
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCceEEee--------ec-----cCceEEEEECCCCCEEEEeecCcceecCCcEEE
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA--------AE-----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ 69 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~--------~~-----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i 69 (143)
+.-|...||++|. .|+.|++||+.+...... ++ ..+++++..+..|.||.+.+ .|+.|+.
T Consensus 225 ~fkDe~tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC------tD~sIy~ 297 (720)
T KOG0321|consen 225 LFKDESTLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC------TDNSIYF 297 (720)
T ss_pred EEeccceeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe------cCCcEEE
Confidence 4578889999986 599999999885433221 11 13577888888889877666 4999999
Q ss_pred EeecCcEE---Eecc----CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 70 WSFQGKII---KRFN----SPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 70 W~~~g~~l---~~~~----~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
|++.+.-+ ..+. ......-..+||+..|+|++-|+.+
T Consensus 298 ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~a 341 (720)
T KOG0321|consen 298 YNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQA 341 (720)
T ss_pred EeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcce
Confidence 99964422 2211 2223345679999999999988754
No 246
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.85 E-value=0.00023 Score=60.07 Aligned_cols=97 Identities=14% Similarity=0.243 Sum_probs=69.1
Q ss_pred EecCCCEEEEEecCCCC-eEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE--E
Q psy5876 3 LRMRGTHIVLAELRDTG-SLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI--I 77 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg-~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~--l 77 (143)
++-+++-++.|. .|| .+.|+|.++++.....+ -..|-.+.-+|||++++.+-+ ...+.+.|++ |+. +
T Consensus 367 ~~~~~e~~vigt--~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd------r~el~vididngnv~~i 438 (668)
T COG4946 367 IQVDPEGDVIGT--NDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND------RFELWVIDIDNGNVRLI 438 (668)
T ss_pred EccCCcceEEec--cCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC------ceEEEEEEecCCCeeEe
Confidence 445566677776 477 89999999887544333 367999999999999998772 2344455664 553 3
Q ss_pred EeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRFNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.+.....|.++.|||++.+++=+-.++-+.
T Consensus 439 dkS~~~lItdf~~~~nsr~iAYafP~gy~t 468 (668)
T COG4946 439 DKSEYGLITDFDWHPNSRWIAYAFPEGYYT 468 (668)
T ss_pred cccccceeEEEEEcCCceeEEEecCcceee
Confidence 334467899999999999999766555443
No 247
>KOG0649|consensus
Probab=97.84 E-value=0.00014 Score=56.90 Aligned_cols=102 Identities=11% Similarity=0.201 Sum_probs=72.5
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCC---------ce-EEeee--ccCceEEEEECCCCCEEEEeecC------c----
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGD---------FS-VMNAA--EHHQATDVEWDPTGRYVMSGVSL------W---- 59 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~---------~~-~~~~~--~~~~v~~i~wsPdG~~lat~s~~------~---- 59 (143)
+|||-+++|++|+ .+|+|-|..+++ ++ .+..+ +..+++.++|. .++|++|++. |
T Consensus 17 a~sp~~~~l~agn--~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 17 AISPSKQYLFAGN--LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEE 92 (325)
T ss_pred hhCCcceEEEEec--CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhh
Confidence 5899999999988 589998888662 22 12221 23567888887 4566666541 0
Q ss_pred ---------c-----------------------------eecCCcEEEEee-cCcEEEec--cCCcEEEEEEeeCCCeee
Q psy5876 60 ---------K-----------------------------TKADTGYWQWSF-QGKIIKRF--NSPTFCQLRWRPRPASLL 98 (143)
Q Consensus 60 ---------~-----------------------------~~~D~~i~iW~~-~g~~l~~~--~~~~v~~l~wsP~~~~l~ 98 (143)
+ ...|..++.||+ +|+..+.+ |.+-|.++.-+.....++
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL 172 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee
Confidence 0 024778888999 47765554 577899999988888899
Q ss_pred ecCchhhHH
Q psy5876 99 SKEQVDKIK 107 (143)
Q Consensus 99 s~s~d~~i~ 107 (143)
||++|+++|
T Consensus 173 sG~EDGtvR 181 (325)
T KOG0649|consen 173 SGAEDGTVR 181 (325)
T ss_pred ecCCCccEE
Confidence 999999998
No 248
>KOG4547|consensus
Probab=97.84 E-value=0.00023 Score=60.61 Aligned_cols=89 Identities=9% Similarity=0.103 Sum_probs=71.1
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEe
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKR 79 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~ 79 (143)
|+.+-..|-+++ .|+.+..|+..+...+.... ...+.+++.+|||+.+++||. .|++|++. ++.+.+
T Consensus 110 ~~~~~~ciyS~~--ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~--------~ik~~~~~~kevv~~ 179 (541)
T KOG4547|consen 110 DAQRLGCIYSVG--ADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR--------QIKVLDIETKEVVIT 179 (541)
T ss_pred cccccCceEecC--CceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc--------eEEEEEccCceEEEE
Confidence 455556777777 68999999999887777653 346899999999999999994 79999995 556655
Q ss_pred c--cCCcEEEEEEeeC-----CCeeeecC
Q psy5876 80 F--NSPTFCQLRWRPR-----PASLLSKE 101 (143)
Q Consensus 80 ~--~~~~v~~l~wsP~-----~~~l~s~s 101 (143)
+ |..+|..++|--+ |.++++.-
T Consensus 180 ftgh~s~v~t~~f~~~~~g~~G~~vLssa 208 (541)
T KOG4547|consen 180 FTGHGSPVRTLSFTTLIDGIIGKYVLSSA 208 (541)
T ss_pred ecCCCcceEEEEEEEeccccccceeeecc
Confidence 5 4779999999988 78888753
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.00039 Score=56.32 Aligned_cols=98 Identities=11% Similarity=0.163 Sum_probs=70.8
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC--c--eEEeee---c-----cCceEEEEECCCCCEEEEeecCcceecCCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD--F--SVMNAA---E-----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYW 68 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~--~--~~~~~~---~-----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~ 68 (143)
|.|+|+|++.-+.+. .+++|.+|..+. + +.+++. + ......|..+||||||.++-. ..+.|.
T Consensus 196 i~FHpn~k~aY~v~E-L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR-----g~dsI~ 269 (346)
T COG2706 196 IVFHPNGKYAYLVNE-LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR-----GHDSIA 269 (346)
T ss_pred EEEcCCCcEEEEEec-cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC-----CCCeEE
Confidence 579999998877655 789999999775 2 233332 2 136889999999999988763 466888
Q ss_pred EEeec--CcEEEe---ccCCc--EEEEEEeeCCCeeeecCchh
Q psy5876 69 QWSFQ--GKIIKR---FNSPT--FCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 69 iW~~~--g~~l~~---~~~~~--v~~l~wsP~~~~l~s~s~d~ 104 (143)
+|.++ |..|.. ..... =.++.++|.|..|+.+.++.
T Consensus 270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred EEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence 99884 444432 22222 36889999999999887754
No 250
>KOG1036|consensus
Probab=97.82 E-value=0.00013 Score=58.06 Aligned_cols=93 Identities=16% Similarity=0.265 Sum_probs=67.6
Q ss_pred CeEecCCCEEEEEecCCCCeE--EEEECC----C----ceEEeeec-----cCceEEEEECCCCCEEEEeecCcceecCC
Q psy5876 1 MKLRMRGTHIVLAELRDTGSL--EFVDTG----D----FSVMNAAE-----HHQATDVEWDPTGRYVMSGVSLWKTKADT 65 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i--~iWd~~----~----~~~~~~~~-----~~~v~~i~wsPdG~~lat~s~~~~~~~D~ 65 (143)
|++-|++.=.|+++ .+|.| ++.|.. + +++-...+ ..+|++|+|+|--++||||+ .|+
T Consensus 183 v~~~pn~eGy~~sS--ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG------sDG 254 (323)
T KOG1036|consen 183 VALVPNGEGYVVSS--IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG------SDG 254 (323)
T ss_pred EEEecCCCceEEEe--ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC------CCc
Confidence 35668777677777 58865 445544 1 22211111 14799999999999999999 599
Q ss_pred cEEEEeecCc-EEEecc--CCcEEEEEEeeCCCeeeecC
Q psy5876 66 GYWQWSFQGK-IIKRFN--SPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 66 ~i~iW~~~g~-~l~~~~--~~~v~~l~wsP~~~~l~s~s 101 (143)
-|.+||...+ .+..++ ...|..++|+-+|..|+.++
T Consensus 255 ~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 255 IVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred eEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 9999999654 566555 45699999999999999875
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.81 E-value=0.00042 Score=56.74 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=57.9
Q ss_pred CeEecCCCEEEEEecC--------CCCeEEEEECCCceEEeeec-cCceEEEEECCCCC-EEEEeecCcceecCCcEEEE
Q psy5876 1 MKLRMRGTHIVLAELR--------DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQW 70 (143)
Q Consensus 1 i~~SPdG~~las~~~~--------~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW 70 (143)
++++|||++|.++..+ ..+.|.++|+.+++.+.+.. ...+..+++||||+ +|.+... .++.+.+.
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~-----~s~~VsVi 327 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST-----GDKTLYIF 327 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC-----CCCcEEEE
Confidence 4789999988874311 12579999999999988765 45799999999999 7766663 47789999
Q ss_pred ee-cCcEEEec
Q psy5876 71 SF-QGKIIKRF 80 (143)
Q Consensus 71 ~~-~g~~l~~~ 80 (143)
|. +++.+.+.
T Consensus 328 D~~t~k~i~~i 338 (352)
T TIGR02658 328 DAETGKELSSV 338 (352)
T ss_pred ECcCCeEEeee
Confidence 99 47777765
No 252
>KOG1272|consensus
Probab=97.81 E-value=6.3e-05 Score=62.91 Aligned_cols=123 Identities=12% Similarity=0.128 Sum_probs=81.1
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee--cCc--
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--QGK-- 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g~-- 75 (143)
|++.|+|+|+|++| .|..++|||+.+...+.+... .+.+.+++|.-|-. |.+- ...+.||.= .|.
T Consensus 299 iAv~~~G~YMaTtG--~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglL-A~~~-------G~~v~iw~d~~~~s~~ 368 (545)
T KOG1272|consen 299 IAVDRGGRYMATTG--LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLL-ALSY-------GDHVQIWKDALKGSGH 368 (545)
T ss_pred EEECCCCcEEeecc--cccceeEeeeccccccceeecCCCccccccccccce-eeec-------CCeeeeehhhhcCCCC
Confidence 57889999999999 699999999998776666543 57888999987743 3333 346889943 221
Q ss_pred --EEEecc--CCcEEEEEEeeC------------CCeeeecCchhhH----HhhhhhhchhccHHhHHHHhhccccce
Q psy5876 76 --IIKRFN--SPTFCQLRWRPR------------PASLLSKEQVDKI----KKSLKKYTPAFEAKDRQRMNKASKYAD 133 (143)
Q Consensus 76 --~l~~~~--~~~v~~l~wsP~------------~~~l~s~s~d~~i----~~~~~~~~~~~e~~~~~~~~~~~~~~~ 133 (143)
..+..| ...|.++.|.|. ..+||+|+.+... -..|.+....-|-|.+...++-=-|.|
T Consensus 369 ~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfetrKQRqE~EVr~LLeKippElI 446 (545)
T KOG1272|consen 369 GETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFETRKQRQEKEVRSLLEKIPPELI 446 (545)
T ss_pred CCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcchhhhHHhHHHHHHHHhhCChHhE
Confidence 122222 458889999887 2467777765432 244555555556666555555444443
No 253
>KOG1517|consensus
Probab=97.80 E-value=5.4e-05 Score=68.57 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=72.4
Q ss_pred eEecCCC-EEEEEecCCCCeEEEEECCCceE-----Eee-eccC-ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 2 KLRMRGT-HIVLAELRDTGSLEFVDTGDFSV-----MNA-AEHH-QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 2 ~~SPdG~-~las~~~~~dg~i~iWd~~~~~~-----~~~-~~~~-~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
++.++|- .|++|+ .+|.|++||+..... +.. .+.+ ..+++.-+++...+|||+ . ..++||+..
T Consensus 1263 slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs------~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS------A-QLIKIYSLS 1333 (1387)
T ss_pred EeecCCCcceeeec--cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC------c-ceEEEEecC
Confidence 3445454 488888 699999999875211 111 1213 489999999999999999 4 789999999
Q ss_pred CcEEEecc---------CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 74 GKIIKRFN---------SPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 74 g~~l~~~~---------~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
|+++.... ...+.+++|+|.-..|+.|+.|..|
T Consensus 1334 G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1334 GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 99775431 3467899999999999999888765
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.79 E-value=0.00054 Score=55.55 Aligned_cols=93 Identities=12% Similarity=0.165 Sum_probs=69.8
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeee-----ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC--
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA-----EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-- 74 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~-----~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-- 74 (143)
.+.|+|++|++...+.| .|.+|+.+.+++.... +..+...|.|+|+|++...... .+++|-+|..++
T Consensus 151 ~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E-----L~stV~v~~y~~~~ 224 (346)
T COG2706 151 NFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE-----LNSTVDVLEYNPAV 224 (346)
T ss_pred eeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec-----cCCEEEEEEEcCCC
Confidence 47899999999987544 6889999877654322 2357899999999999887774 689999999964
Q ss_pred c---EEEe---cc-----CCcEEEEEEeeCCCeeeec
Q psy5876 75 K---IIKR---FN-----SPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 75 ~---~l~~---~~-----~~~v~~l~wsP~~~~l~s~ 100 (143)
. .++. .+ ....-++..+|||+.|...
T Consensus 225 g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas 261 (346)
T COG2706 225 GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS 261 (346)
T ss_pred ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEe
Confidence 2 2222 11 3467899999999988764
No 255
>KOG2321|consensus
Probab=97.77 E-value=0.00016 Score=61.87 Aligned_cols=91 Identities=15% Similarity=0.265 Sum_probs=65.4
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeee---------c----cCceEEEEECCCCCEEEEeecCcceecCCcEE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA---------E----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYW 68 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~---------~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~ 68 (143)
..+|--..|++|+ .+|.|++||..+-..+.+. . ...|+++.|+-||-.+++|+ .++.+.
T Consensus 182 ~in~~hgLla~Gt--~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt------s~G~v~ 253 (703)
T KOG2321|consen 182 SINEEHGLLACGT--EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT------STGSVL 253 (703)
T ss_pred eecCccceEEecc--cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec------cCCcEE
Confidence 3456667888888 6999999997643222211 1 12599999999999999999 589999
Q ss_pred EEeec-Cc-EEEecc--CCcEEEEEEeeC--CCeeeec
Q psy5876 69 QWSFQ-GK-IIKRFN--SPTFCQLRWRPR--PASLLSK 100 (143)
Q Consensus 69 iW~~~-g~-~l~~~~--~~~v~~l~wsP~--~~~l~s~ 100 (143)
|+|+. .+ ++.+.| .-+|..+.|.+. ++.++|.
T Consensus 254 iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~ 291 (703)
T KOG2321|consen 254 IYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM 291 (703)
T ss_pred EEEcccCCceeecccCCccceeeecccccCCCceEEec
Confidence 99995 44 344445 448999999887 4456553
No 256
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.75 E-value=0.0012 Score=50.50 Aligned_cols=91 Identities=13% Similarity=0.161 Sum_probs=64.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECC--Cc-----eEEeeeccC--ceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTG--DF-----SVMNAAEHH--QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS 71 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~--~~-----~~~~~~~~~--~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~ 71 (143)
|+|||||+.|..+.. ..+.|.-++.+ +. +.+..+... ..-.++.+++|+..++.. ..+.|.+++
T Consensus 139 i~~s~dg~~lyv~ds-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~------~~~~I~~~~ 211 (246)
T PF08450_consen 139 IAFSPDGKTLYVADS-FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW------GGGRIVVFD 211 (246)
T ss_dssp EEEETTSSEEEEEET-TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE------TTTEEEEEE
T ss_pred eEECCcchheeeccc-ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc------CCCEEEEEC
Confidence 589999998876554 46788888865 22 122223322 377899999999877765 477999999
Q ss_pred ecCcEEEecc--CCcEEEEEEe-eCCCeee
Q psy5876 72 FQGKIIKRFN--SPTFCQLRWR-PRPASLL 98 (143)
Q Consensus 72 ~~g~~l~~~~--~~~v~~l~ws-P~~~~l~ 98 (143)
.+|+++.... ...+.+++|. |+...|.
T Consensus 212 p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 212 PDGKLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp TTSCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred CCccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 9999887654 4689999994 6765554
No 257
>KOG0642|consensus
Probab=97.75 E-value=0.0001 Score=62.69 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=74.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceE--------------------------------------------Eeeec
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV--------------------------------------------MNAAE 36 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~--------------------------------------------~~~~~ 36 (143)
+++|+.-.+|++++ .||++++|+...... +..++
T Consensus 402 l~~s~~~~~Llscs--~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~ 479 (577)
T KOG0642|consen 402 LALSSTKDRLLSCS--SDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE 479 (577)
T ss_pred eeecccccceeeec--CCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeecc
Confidence 46788889999999 599999999542111 00011
Q ss_pred ---------cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEec--cCCcEEEEEEeeCCCeeeecCchh
Q psy5876 37 ---------HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRF--NSPTFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 37 ---------~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~ 104 (143)
...+..+.|.|.+-...++. .|..|+++|. .|..++.. +...|.++++-|+|..|++++.|.
T Consensus 480 s~~~~~~~~~~~in~vVs~~~~~~~~~~h------ed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~ 553 (577)
T KOG0642|consen 480 SSASPGPRRYPQINKVVSHPTADITFTAH------EDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDG 553 (577)
T ss_pred ccCCCcccccCccceEEecCCCCeeEecc------cCCceecccccccccchheeeccceecceeecCCCceEEeecCCc
Confidence 01245667777777777766 6889999998 58888864 578899999999999999999999
Q ss_pred hHH
Q psy5876 105 KIK 107 (143)
Q Consensus 105 ~i~ 107 (143)
.++
T Consensus 554 sv~ 556 (577)
T KOG0642|consen 554 SVR 556 (577)
T ss_pred eee
Confidence 876
No 258
>KOG0649|consensus
Probab=97.74 E-value=0.00048 Score=53.89 Aligned_cols=93 Identities=14% Similarity=0.072 Sum_probs=62.6
Q ss_pred ecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEec
Q psy5876 4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRF 80 (143)
Q Consensus 4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~ 80 (143)
-|..+-|..++ .|+.++-||+++|+...++ |...+-++.--...-.|.||+ .|++++|||. +++++...
T Consensus 123 dP~enSi~~Ag--GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~------EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 123 DPSENSILFAG--GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGA------EDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred ccCCCcEEEec--CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecC------CCccEEEEeccccceeEEe
Confidence 46655555555 4999999999999877665 445788887744445688999 7999999999 57776543
Q ss_pred c----CC------cEEEEEEeeCCCeeeecCchh
Q psy5876 81 N----SP------TFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 81 ~----~~------~v~~l~wsP~~~~l~s~s~d~ 104 (143)
. .+ .=+-.+..-+..+|++|+.-+
T Consensus 195 e~yk~~~~lRp~~g~wigala~~edWlvCGgGp~ 228 (325)
T KOG0649|consen 195 EPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK 228 (325)
T ss_pred ccccChhhcCcccCceeEEEeccCceEEecCCCc
Confidence 2 11 111133344556888876543
No 259
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.74 E-value=0.00071 Score=54.31 Aligned_cols=99 Identities=9% Similarity=0.126 Sum_probs=71.9
Q ss_pred eEecCCCEEEEEecC---CCCeEEEEECC-CceEEeeeccCc--eEEEEECCCCCEEEEeecCc-------c--e---ec
Q psy5876 2 KLRMRGTHIVLAELR---DTGSLEFVDTG-DFSVMNAAEHHQ--ATDVEWDPTGRYVMSGVSLW-------K--T---KA 63 (143)
Q Consensus 2 ~~SPdG~~las~~~~---~dg~i~iWd~~-~~~~~~~~~~~~--v~~i~wsPdG~~lat~s~~~-------~--~---~~ 63 (143)
.|||||++|.+.-.+ ..|.|-+||.. +.+.+.++..+. .-.+.|.|||+.|+.+-..- | + .+
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 599999999987433 36899999988 778888876544 46889999999888875421 1 1 24
Q ss_pred CCcEEEEee-cCcEEEec------cCCcEEEEEEeeCCCeeeec
Q psy5876 64 DTGYWQWSF-QGKIIKRF------NSPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 64 D~~i~iW~~-~g~~l~~~------~~~~v~~l~wsP~~~~l~s~ 100 (143)
+..+-.-|. +|+++.+. +...+.++++.++|..++-.
T Consensus 137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEE
Confidence 556656655 68887663 23469999999998866543
No 260
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.00015 Score=60.81 Aligned_cols=97 Identities=11% Similarity=0.180 Sum_probs=66.2
Q ss_pred eEecCCCEEEEEecC-CC-CeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCC--cEEEEeecCcE
Q psy5876 2 KLRMRGTHIVLAELR-DT-GSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADT--GYWQWSFQGKI 76 (143)
Q Consensus 2 ~~SPdG~~las~~~~-~d-g~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~--~i~iW~~~g~~ 76 (143)
.|||+|+.++-..+. .. ..+.++|+++++...... ...-..-+|||||++||-++. .|+ .+++.|++++.
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~-----rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSS-----RDGSPDIYLMDLDGKN 273 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEEC-----CCCCccEEEEcCCCCc
Confidence 599999998877664 22 358899998765433222 234456789999999998885 344 45566777776
Q ss_pred EEecc--CCcEEEEEEeeCCCeeeecCch
Q psy5876 77 IKRFN--SPTFCQLRWRPRPASLLSKEQV 103 (143)
Q Consensus 77 l~~~~--~~~v~~l~wsP~~~~l~s~s~d 103 (143)
+.++. ...-.+=.|+|||+.|+=.++.
T Consensus 274 ~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr 302 (425)
T COG0823 274 LPRLTNGFGINTSPSWSPDGSKIVFTSDR 302 (425)
T ss_pred ceecccCCccccCccCCCCCCEEEEEeCC
Confidence 65542 2222367899999999966543
No 261
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.69 E-value=0.001 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.2
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECC
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTG 27 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~ 27 (143)
++||||+..||.+. ..|+|+++|+-
T Consensus 49 l~WSpD~tlLa~a~--S~G~i~vfdl~ 73 (282)
T PF15492_consen 49 LAWSPDCTLLAYAE--STGTIRVFDLM 73 (282)
T ss_pred EEECCCCcEEEEEc--CCCeEEEEecc
Confidence 58999999999997 58999999954
No 262
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.69 E-value=0.00028 Score=64.24 Aligned_cols=110 Identities=13% Similarity=0.217 Sum_probs=75.7
Q ss_pred CeEecCCCEEEEEecC--C--CCeEEEEECCCceEEeeecc-Cc-eEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876 1 MKLRMRGTHIVLAELR--D--TGSLEFVDTGDFSVMNAAEH-HQ-ATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG 74 (143)
Q Consensus 1 i~~SPdG~~las~~~~--~--dg~i~iWd~~~~~~~~~~~~-~~-v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g 74 (143)
|+|-.||+|+|+++.. . ...+++|+.+ |++..+.+. .+ -..++|-|.|.+||+.... .....|.+|.-+|
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~---~~~~~VvFfErNG 290 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL---PDRHDVVFFERNG 290 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc---CCCcEEEEEecCC
Confidence 5899999999998763 1 2589999987 666555442 12 3578999999999998731 1234566787777
Q ss_pred cEEEec--c----CCcEEEEEEeeCCCeeeecCchhhHH----hhhhhhch
Q psy5876 75 KIIKRF--N----SPTFCQLRWRPRPASLLSKEQVDKIK----KSLKKYTP 115 (143)
Q Consensus 75 ~~l~~~--~----~~~v~~l~wsP~~~~l~s~s~d~~i~----~~~~~~~~ 115 (143)
-.-..+ + ...|..+.|++++..|+-.-.|. |+ +|+.=|.|
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK 340 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK 340 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE
Confidence 443332 1 34799999999999998765443 44 55554443
No 263
>KOG1310|consensus
Probab=97.69 E-value=5.7e-05 Score=64.45 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=53.9
Q ss_pred cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEe---ccCCcEEEEEEeeCC--CeeeecCchhhHH
Q psy5876 37 HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKR---FNSPTFCQLRWRPRP--ASLLSKEQVDKIK 107 (143)
Q Consensus 37 ~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~---~~~~~v~~l~wsP~~--~~l~s~s~d~~i~ 107 (143)
.+-|++++|+.||.+||+|| .|..+.|||+- -++++. .|...|+++.|-|.- ..++|++.|+.|+
T Consensus 50 ~GCVN~LeWn~dG~lL~SGS------DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 50 TGCVNCLEWNADGELLASGS------DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred cceecceeecCCCCEEeecC------CcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 34589999999999999999 48889999995 445554 357789999998864 6888999999986
No 264
>KOG4640|consensus
Probab=97.65 E-value=0.00022 Score=61.48 Aligned_cols=84 Identities=14% Similarity=0.250 Sum_probs=67.2
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceE-EEEECCCCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQAT-DVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~-~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~ 76 (143)
+-|+|.-..||.+. .+|.|-+...+ .+.+-+++ ..+++ +++|.|||+.||.|- .|++|++-|+ .|..
T Consensus 26 ~ewnP~~dLiA~~t--~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~------kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 26 IEWNPKMDLIATRT--EKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGF------KDGTIRLHDVEKGGR 96 (665)
T ss_pred EEEcCccchhheec--cCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEe------cCCeEEEEEccCCCc
Confidence 35899999999998 58999999888 55665554 34566 999999999999999 6999999999 4777
Q ss_pred EEecc---CCcEEEEEEeeC
Q psy5876 77 IKRFN---SPTFCQLRWRPR 93 (143)
Q Consensus 77 l~~~~---~~~v~~l~wsP~ 93 (143)
+.... ...|....|.|.
T Consensus 97 l~~~~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDRI 116 (665)
T ss_pred eeccccccccchheeecccc
Confidence 77632 567888888743
No 265
>KOG0644|consensus
Probab=97.65 E-value=1.9e-05 Score=69.92 Aligned_cols=94 Identities=12% Similarity=0.205 Sum_probs=78.0
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIK 78 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~ 78 (143)
.|--.|++|.+|+ +|..++||.+++..++... |...+++++-+...-++|++| .|.-|++|-+ +|..+.
T Consensus 197 ~fDrtg~~Iitgs--dd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS------~D~vIrvWrl~~~~pvs 268 (1113)
T KOG0644|consen 197 IFDRTGRYIITGS--DDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAAS------NDKVIRVWRLPDGAPVS 268 (1113)
T ss_pred eeccccceEeecC--ccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcc------cCceEEEEecCCCchHH
Confidence 4667899999998 7899999999998888765 335799999999999999999 6999999999 476654
Q ss_pred e--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 79 R--FNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 79 ~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
- .+...|.+++|+|.. +.++|++.+
T Consensus 269 vLrghtgavtaiafsP~~----sss~dgt~~ 295 (1113)
T KOG0644|consen 269 VLRGHTGAVTAIAFSPRA----SSSDDGTCR 295 (1113)
T ss_pred HHhccccceeeeccCccc----cCCCCCceE
Confidence 3 357789999999987 666777665
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.64 E-value=0.00071 Score=57.00 Aligned_cols=105 Identities=14% Similarity=0.230 Sum_probs=61.8
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecC------------------c---
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSL------------------W--- 59 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~------------------~--- 59 (143)
++++|+|+++++++ +|.-.|+.....+.... +...+.+|++.|+|.+--+.. +
T Consensus 38 ls~npngr~v~V~g---~geY~iyt~~~~r~k~~---G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~ 111 (443)
T PF04053_consen 38 LSHNPNGRFVLVCG---DGEYEIYTALAWRNKAF---GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSV 111 (443)
T ss_dssp EEE-TTSSEEEEEE---TTEEEEEETTTTEEEEE---EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-E
T ss_pred EEECCCCCEEEEEc---CCEEEEEEccCCccccc---CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCccc
Confidence 47899999999988 88888998554433322 234456677766654333210 0
Q ss_pred ---------ceecCCcEEEEeec-CcEEEeccCCcEEEEEEeeCCCeeeecCchhh--HHhhhh
Q psy5876 60 ---------KTKADTGYWQWSFQ-GKIIKRFNSPTFCQLRWRPRPASLLSKEQVDK--IKKSLK 111 (143)
Q Consensus 60 ---------~~~~D~~i~iW~~~-g~~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~--i~~~~~ 111 (143)
....++.+.+||.+ ++.+++.....|..+.|+|+|..++-.+.+.. .++++.
T Consensus 112 ~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 112 EKIFGGNLLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp EEEE-SSSEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred ceEEcCcEEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 01234568899995 78888888777999999999998887766542 234444
No 267
>KOG3914|consensus
Probab=97.61 E-value=0.00018 Score=58.98 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=60.0
Q ss_pred CCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEEEec---cCCcEEEEEEee
Q psy5876 18 TGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KIIKRF---NSPTFCQLRWRP 92 (143)
Q Consensus 18 dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l~~~---~~~~v~~l~wsP 92 (143)
...+.+|....+.+.....| ..+++++||||+++|+|+. .|..|+|=.+-+ ..+..+ |...|..++.-|
T Consensus 131 ~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaD------RDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~ 204 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITAD------RDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD 204 (390)
T ss_pred ceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEec------CCceEEEEecCcccchhhhccccHhheeeeeecc
Confidence 34555555555554444434 5789999999999999999 688899855533 234332 466788999886
Q ss_pred CCCeeeecCchhhHH
Q psy5876 93 RPASLLSKEQVDKIK 107 (143)
Q Consensus 93 ~~~~l~s~s~d~~i~ 107 (143)
+.. |+|+|.|++++
T Consensus 205 ~~~-LlS~sGD~tlr 218 (390)
T KOG3914|consen 205 NYL-LLSGSGDKTLR 218 (390)
T ss_pred Cce-eeecCCCCcEE
Confidence 655 99999999998
No 268
>KOG0280|consensus
Probab=97.60 E-value=0.00044 Score=55.13 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=62.9
Q ss_pred CEEEEEecCCCCeEEEEECCC-ceEEee---eccCceEEEEECC-CCCEEEEeecCcceecCCcEEEEeec--CcEEEec
Q psy5876 8 THIVLAELRDTGSLEFVDTGD-FSVMNA---AEHHQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSFQ--GKIIKRF 80 (143)
Q Consensus 8 ~~las~~~~~dg~i~iWd~~~-~~~~~~---~~~~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~~--g~~l~~~ 80 (143)
+.+-+|| +||.+..||+.- .+.+.. .|+.+|.+|.=|| .+.+|+||+ -|..+++||.. |+.+...
T Consensus 179 nlvytGg--DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs------YDe~i~~~DtRnm~kPl~~~ 250 (339)
T KOG0280|consen 179 NLVYTGG--DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS------YDECIRVLDTRNMGKPLFKA 250 (339)
T ss_pred ceEEecC--CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec------cccceeeeehhcccCccccC
Confidence 4777888 799999999882 233332 3456888887775 588999999 58999999995 8888876
Q ss_pred c-CCcEEEEEEeeCCC
Q psy5876 81 N-SPTFCQLRWRPRPA 95 (143)
Q Consensus 81 ~-~~~v~~l~wsP~~~ 95 (143)
. ..+||.+.|+|--.
T Consensus 251 ~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 251 KVGGGVWRIKHHPEIF 266 (339)
T ss_pred ccccceEEEEecchhh
Confidence 5 67999999999755
No 269
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.60 E-value=0.00051 Score=59.78 Aligned_cols=98 Identities=14% Similarity=0.034 Sum_probs=57.6
Q ss_pred eEecCCCEEEEEecC----CCC--eEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcc------eecCCcEEE
Q psy5876 2 KLRMRGTHIVLAELR----DTG--SLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWK------TKADTGYWQ 69 (143)
Q Consensus 2 ~~SPdG~~las~~~~----~dg--~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~------~~~D~~i~i 69 (143)
+.||||+.+|..... .|. .|.+++........+ .....+.-.|||||+.|++.+...+ ....+.+.+
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~ 434 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-EGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLAR 434 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-cCCCCCCceECCCCCceEEEecCcceEEEeccCCCceEEE
Confidence 689999998776410 133 455555433221112 2234788999999999988873200 001223333
Q ss_pred EeecCcEEEeccCCcEEEEEEeeCCCeeeec
Q psy5876 70 WSFQGKIIKRFNSPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 70 W~~~g~~l~~~~~~~v~~l~wsP~~~~l~s~ 100 (143)
..+++..........|.++.|||||.+++-.
T Consensus 435 ~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i 465 (591)
T PRK13616 435 TPVDASAVASRVPGPISELQLSRDGVRAAMI 465 (591)
T ss_pred EeccCchhhhccCCCcCeEEECCCCCEEEEE
Confidence 3554433332224579999999999988753
No 270
>KOG2321|consensus
Probab=97.54 E-value=0.00025 Score=60.76 Aligned_cols=98 Identities=18% Similarity=0.329 Sum_probs=76.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc---CceEEEEECCCCC--EEEEeecCcceecCCcEEEEee-cC
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH---HQATDVEWDPTGR--YVMSGVSLWKTKADTGYWQWSF-QG 74 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~---~~v~~i~wsPdG~--~lat~s~~~~~~~D~~i~iW~~-~g 74 (143)
+.|+.||-.+++|. .+|.+.|||+.+-+.+..-.| .+|..+.|-+.+. .++|.. ...++|||- +|
T Consensus 234 l~F~d~gL~~aVGt--s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-------k~~~kiWd~~~G 304 (703)
T KOG2321|consen 234 LKFRDDGLHVAVGT--STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-------KRILKIWDECTG 304 (703)
T ss_pred EEecCCceeEEeec--cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-------hHHhhhcccccC
Confidence 47888999999998 689999999987665543322 4799999988744 455544 457899998 58
Q ss_pred cEEEec-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 75 KIIKRF-NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 75 ~~l~~~-~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
+..... +...++++++-|++-+++++-+...+.
T Consensus 305 k~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~ 338 (703)
T KOG2321|consen 305 KPMASIEPTSDLNDFCFVPGSGMFFTANESSKMH 338 (703)
T ss_pred CceeeccccCCcCceeeecCCceEEEecCCCcce
Confidence 877665 456799999999999999987777655
No 271
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.51 E-value=0.0018 Score=53.22 Aligned_cols=99 Identities=10% Similarity=0.102 Sum_probs=62.9
Q ss_pred eEecCCCEEEEEe-cC--CCCeEEEEECCCceEEee-eccCceEEEEECCCCCEEEEeecCccee-----cCCcEEEEee
Q psy5876 2 KLRMRGTHIVLAE-LR--DTGSLEFVDTGDFSVMNA-AEHHQATDVEWDPTGRYVMSGVSLWKTK-----ADTGYWQWSF 72 (143)
Q Consensus 2 ~~SPdG~~las~~-~~--~dg~i~iWd~~~~~~~~~-~~~~~v~~i~wsPdG~~lat~s~~~~~~-----~D~~i~iW~~ 72 (143)
++||||++||.+- .+ ...++++.|+.+++.+.. +.......++|++||+.|.-........ ....++.|.+
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~ 209 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL 209 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence 6899999999762 11 123699999999987653 2322334499999999876665332111 1345677776
Q ss_pred c-C----cEEEeccC-Cc-EEEEEEeeCCCeeeec
Q psy5876 73 Q-G----KIIKRFNS-PT-FCQLRWRPRPASLLSK 100 (143)
Q Consensus 73 ~-g----~~l~~~~~-~~-v~~l~wsP~~~~l~s~ 100 (143)
. + .+++.... .. ...+..+++++.|+-.
T Consensus 210 gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~ 244 (414)
T PF02897_consen 210 GTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFIS 244 (414)
T ss_dssp TS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEE
T ss_pred CCChHhCeeEEeecCCCcEEEEEEecCcccEEEEE
Confidence 2 2 25665543 33 6789999999987743
No 272
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.50 E-value=0.00097 Score=58.13 Aligned_cols=93 Identities=11% Similarity=0.138 Sum_probs=63.5
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceE------------Eeeec-cCceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV------------MNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGY 67 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~------------~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i 67 (143)
+.+||||+++.+++. .++++.+.|+.+.+. +.+.+ .......+|+++|.-+.|-. .|+.+
T Consensus 326 V~vSPDGkylyVank-lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf------~dsqv 398 (635)
T PRK02888 326 VNTSPDGKYFIANGK-LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLF------LDSQI 398 (635)
T ss_pred eEECCCCCEEEEeCC-CCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEe------eccee
Confidence 578999999999876 689999999987542 22222 23567889999998666666 79999
Q ss_pred EEEeecC-----------cEEEecc-CCcEEEEEE------eeCCCeeeec
Q psy5876 68 WQWSFQG-----------KIIKRFN-SPTFCQLRW------RPRPASLLSK 100 (143)
Q Consensus 68 ~iW~~~g-----------~~l~~~~-~~~v~~l~w------sP~~~~l~s~ 100 (143)
..|+++. ..+.+.. ....-++.= .|||++|++.
T Consensus 399 ~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 399 VKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSL 449 (635)
T ss_pred EEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEc
Confidence 9999853 2334332 122333333 6777777774
No 273
>KOG1587|consensus
Probab=97.50 E-value=0.00025 Score=61.14 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=67.8
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECC-CceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc---
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTG-DFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--- 75 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~-~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--- 75 (143)
.++|=+..+.+++ .|-+++||... .-..+..+. ...+++++|||.---+....+ .|+.+.|||+.-+
T Consensus 405 ~~nPF~~k~fls~--gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d-----~~G~l~iWDLl~~~~~ 477 (555)
T KOG1587|consen 405 SRNPFYPKNFLSV--GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD-----GDGNLDIWDLLQDDEE 477 (555)
T ss_pred ecCCCccceeeee--ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc-----CCCceehhhhhccccC
Confidence 4566666555544 38999999977 444444432 245999999998764444443 6999999999422
Q ss_pred EEEec--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 76 IIKRF--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 76 ~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.+.+. .....+.+.|+|.|+.|+.|...+.++
T Consensus 478 Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 478 PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred CcccccccccccceeecCCCCcEEEEecCCCcEE
Confidence 22222 245677889999999999998888554
No 274
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.46 E-value=0.0013 Score=52.05 Aligned_cols=71 Identities=13% Similarity=0.233 Sum_probs=53.1
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC-c-----eEEe-eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-F-----SVMN-AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~-----~~~~-~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
++-++||+.||+-- |..|+|-...+ + ++.. +-....=..++||||+..||.+. ..++|+++|+.
T Consensus 3 ~~~~~~Gk~lAi~q---d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~------S~G~i~vfdl~ 73 (282)
T PF15492_consen 3 LALSSDGKLLAILQ---DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAE------STGTIRVFDLM 73 (282)
T ss_pred eeecCCCcEEEEEe---ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEc------CCCeEEEEecc
Confidence 35689999999974 89999988653 2 2211 11123457899999999999998 47899999999
Q ss_pred CcEEEec
Q psy5876 74 GKIIKRF 80 (143)
Q Consensus 74 g~~l~~~ 80 (143)
|..++..
T Consensus 74 g~~lf~I 80 (282)
T PF15492_consen 74 GSELFVI 80 (282)
T ss_pred cceeEEc
Confidence 8877654
No 275
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.42 E-value=0.0031 Score=48.19 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=59.6
Q ss_pred eEe-cCCCEEEEEecCCCCeEEEEECCCceE--Eeee-----ccCceEEEEECCCCCEEEEeecCcceecC--CcEEEEe
Q psy5876 2 KLR-MRGTHIVLAELRDTGSLEFVDTGDFSV--MNAA-----EHHQATDVEWDPTGRYVMSGVSLWKTKAD--TGYWQWS 71 (143)
Q Consensus 2 ~~S-PdG~~las~~~~~dg~i~iWd~~~~~~--~~~~-----~~~~v~~i~wsPdG~~lat~s~~~~~~~D--~~i~iW~ 71 (143)
.+. |+|+++++.. +.+.++|..+++. +... .....++++++|+|++.+|.......... +.+..++
T Consensus 46 ~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~ 121 (246)
T PF08450_consen 46 AFDRPDGRLYVADS----GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRID 121 (246)
T ss_dssp EEECTTSEEEEEET----TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEE
T ss_pred EEEccCCEEEEEEc----CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEEC
Confidence 455 6766666543 4456669887653 3332 12358999999999988887643211111 4466666
Q ss_pred ecCcEEEec-cCCcEEEEEEeeCCCeee-ecCchhhH
Q psy5876 72 FQGKIIKRF-NSPTFCQLRWRPRPASLL-SKEQVDKI 106 (143)
Q Consensus 72 ~~g~~l~~~-~~~~v~~l~wsP~~~~l~-s~s~d~~i 106 (143)
.+|+..... ....-+.++|+|+++.|. +.+..+.|
T Consensus 122 ~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i 158 (246)
T PF08450_consen 122 PDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRI 158 (246)
T ss_dssp TTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred CCCeEEEEecCcccccceEECCcchheeeccccccee
Confidence 665432222 245678999999998765 55544443
No 276
>KOG3881|consensus
Probab=97.41 E-value=0.0011 Score=54.44 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=71.5
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEee-ec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA-AE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KII 77 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~-~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l 77 (143)
..-|+|++|.+|. .-|.+-.+|..+++++.. +. .+.+++|.-+|.++++|+++ .|.-++|+|++. +++
T Consensus 254 ~l~p~gn~Iy~gn--~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G------LDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 254 GLTPSGNFIYTGN--TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG------LDRYVRIHDIKTRKLL 325 (412)
T ss_pred eecCCCcEEEEec--ccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec------cceeEEEeecccchhh
Confidence 3469999999998 479999999999887654 33 35799999999999999999 799999999976 566
Q ss_pred Eec-cCCcEEEEEEeeCCCee
Q psy5876 78 KRF-NSPTFCQLRWRPRPASL 97 (143)
Q Consensus 78 ~~~-~~~~v~~l~wsP~~~~l 97 (143)
++. -...++.+-++|+-...
T Consensus 326 ~kvYvKs~lt~il~~~~~n~e 346 (412)
T KOG3881|consen 326 HKVYVKSRLTFILLRDDVNIE 346 (412)
T ss_pred hhhhhhccccEEEecCCcccc
Confidence 654 36788888888776543
No 277
>KOG4714|consensus
Probab=97.40 E-value=0.00042 Score=54.53 Aligned_cols=67 Identities=16% Similarity=0.366 Sum_probs=51.2
Q ss_pred ecCCCEEEEEecCCCCeEEEEECCCceEEee---eccCceEEEEECC-CCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876 4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNA---AEHHQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSFQGKII 77 (143)
Q Consensus 4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~---~~~~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~~g~~l 77 (143)
.|..+.++.+|. .||.+-+||.....-... -+..++..+-|+| ++..|.|++ .|+.+.-||..+..|
T Consensus 188 hp~qq~~v~cgt-~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s------edGslw~wdas~~~l 258 (319)
T KOG4714|consen 188 HPAQQHLVCCGT-DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS------EDGSLWHWDASTTFL 258 (319)
T ss_pred CcccccEEEEec-CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec------CCCcEEEEcCCCceE
Confidence 577777777665 699999999887632221 2346799999999 677999999 799999999886654
No 278
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.39 E-value=0.00043 Score=59.19 Aligned_cols=64 Identities=11% Similarity=0.170 Sum_probs=51.5
Q ss_pred CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE-EEeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI-IKRFNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~-l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
..+.+++++|+...++.|. .|+.+.+||..-+. ......-....++|+|+|..++.+++.++++
T Consensus 260 s~v~~ca~sp~E~kLvlGC------~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ 324 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGC------EDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQ 324 (545)
T ss_pred CcceEEecCcccceEEEEe------cCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEE
Confidence 4789999999999999999 69999999985332 2222233457899999999999999988876
No 279
>KOG1517|consensus
Probab=97.38 E-value=0.0008 Score=61.28 Aligned_cols=98 Identities=17% Similarity=0.213 Sum_probs=68.2
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc---CceEEEEEC-CCCCEEEEeecCcceecCCcEEEEeec--C-
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH---HQATDVEWD-PTGRYVMSGVSLWKTKADTGYWQWSFQ--G- 74 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~---~~v~~i~ws-PdG~~lat~s~~~~~~~D~~i~iW~~~--g- 74 (143)
.|-....+|.++| .-..|+|||+++.++....+. ..++.++=+ +.|..||.|- .|+.+++||.. -
T Consensus 1172 dWqQ~~G~Ll~tG--d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf------aDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTG--DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF------ADGSVRVYDRRMAPP 1243 (1387)
T ss_pred ehhhhCCeEEecC--CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee------cCCceEEeecccCCc
Confidence 4555555666665 357899999998766655432 235555333 3468888888 69999999984 1
Q ss_pred ---cEEEeccCC--cEEEEEEeeCCCe-eeecCchhhHH
Q psy5876 75 ---KIIKRFNSP--TFCQLRWRPRPAS-LLSKEQVDKIK 107 (143)
Q Consensus 75 ---~~l~~~~~~--~v~~l~wsP~~~~-l~s~s~d~~i~ 107 (143)
-+..+.+.+ +|..+.++++|-. |+|++.++.|+
T Consensus 1244 ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1244 DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred cccceeecccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence 123344444 4999999998865 99999999886
No 280
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.37 E-value=0.0012 Score=55.69 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=40.8
Q ss_pred CCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 7 GTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 7 G~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
|..|...+ ++.|.|||..+++.+.+.+..+|..+.|||+|.++|-.+ +.++.|.+.+
T Consensus 117 G~LL~~~~---~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t-------~~~i~il~~~ 173 (443)
T PF04053_consen 117 GNLLGVKS---SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVT-------KDSIYILKYN 173 (443)
T ss_dssp SSSEEEEE---TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE--------S-SEEEEEE-
T ss_pred CcEEEEEC---CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEe-------CCeEEEEEec
Confidence 78888876 568999999999999998766799999999999999998 4566676654
No 281
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.33 E-value=0.0012 Score=33.45 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=25.7
Q ss_pred cCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876 37 HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS 71 (143)
Q Consensus 37 ~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~ 71 (143)
...+.+++|+|+++++++++ .|+.+++|+
T Consensus 12 ~~~i~~~~~~~~~~~~~~~~------~d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSPDGKYLASAS------DDGTIKLWD 40 (40)
T ss_pred CCceeEEEECCCCCEEEEec------CCCeEEEcC
Confidence 35799999999999999999 689999996
No 282
>KOG4547|consensus
Probab=97.29 E-value=0.003 Score=53.94 Aligned_cols=89 Identities=17% Similarity=0.128 Sum_probs=72.3
Q ss_pred CCCEEEEEecCCCCeEEEEECCCceEEeeec---c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec
Q psy5876 6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF 80 (143)
Q Consensus 6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~---~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~ 80 (143)
|-..||.|. ..|.|.++++..+++..++. | ..|+.+.|+.+-..|-+++ .|..+..|++. ++.+.++
T Consensus 69 ~t~~lvlgt--~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~------ad~~v~~~~~~~~~~~~~~ 140 (541)
T KOG4547|consen 69 DTSMLVLGT--PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVG------ADLKVVYILEKEKVIIRIW 140 (541)
T ss_pred CceEEEeec--CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecC------CceeEEEEecccceeeeee
Confidence 334566665 58999999999988766653 3 5799999999999999999 69999999995 5666665
Q ss_pred c--CCcEEEEEEeeCCCeeeecCc
Q psy5876 81 N--SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 81 ~--~~~v~~l~wsP~~~~l~s~s~ 102 (143)
. ...+.+++.+|||..|++++.
T Consensus 141 ~~~~~~~~sl~is~D~~~l~~as~ 164 (541)
T KOG4547|consen 141 KEQKPLVSSLCISPDGKILLTASR 164 (541)
T ss_pred ccCCCccceEEEcCCCCEEEeccc
Confidence 4 667999999999999998874
No 283
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.15 E-value=0.0014 Score=53.10 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=36.8
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEe-eecc------------------CceEEEEECCCCCEEEEeec
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN-AAEH------------------HQATDVEWDPTGRYVMSGVS 57 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~-~~~~------------------~~v~~i~wsPdG~~lat~s~ 57 (143)
.|||||++||-.. ++.|.+++..+++... +... ..-..+-|||||++||....
T Consensus 49 ~~sP~g~~~~~v~---~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 49 KWSPDGKYIAFVR---DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp EE-SSSTEEEEEE---TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred eeecCCCeeEEEe---cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 6999999999986 7899999977654332 2111 11246789999999999864
No 284
>KOG3621|consensus
Probab=97.14 E-value=0.0018 Score=56.58 Aligned_cols=98 Identities=10% Similarity=0.072 Sum_probs=73.0
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceE-Eeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC----
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSV-MNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG---- 74 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~-~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g---- 74 (143)
+++-.+++|+.|+ ..|.+.+++...++. +.+. .+..+..++.|++..++|.|+ ..+.|.++-++.
T Consensus 40 c~dst~~~l~~Gs--S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt------~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 40 CVDATEEYLAMGS--SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGT------ASGRVSVFQLNKELPR 111 (726)
T ss_pred EeecCCceEEEec--ccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhc------CCceEEeehhhccCCC
Confidence 4567899999998 589999999887653 3333 234567889999998888888 355666776642
Q ss_pred cEEEe--c---cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 75 KIIKR--F---NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 75 ~~l~~--~---~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.+++- . |...|.+++|++++..+.+|-..++|.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~ 149 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVV 149 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEE
Confidence 23321 1 356899999999999999998877775
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.11 E-value=0.0034 Score=58.04 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=50.1
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec---------------cCceEEEEECCCCCEEEEeecCcceecCC
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---------------HHQATDVEWDPTGRYVMSGVSLWKTKADT 65 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~---------------~~~v~~i~wsPdG~~lat~s~~~~~~~D~ 65 (143)
|+++|+|+.+++-. .++.|++||..++....... ......++++|+|+.+++-+ .++
T Consensus 809 vavd~dG~LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt------~Nn 880 (1057)
T PLN02919 809 VLCAKDGQIYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT------NNS 880 (1057)
T ss_pred eeEeCCCcEEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC------CCC
Confidence 46899999777765 48999999998766543211 12467899999999877766 588
Q ss_pred cEEEEeecC
Q psy5876 66 GYWQWSFQG 74 (143)
Q Consensus 66 ~i~iW~~~g 74 (143)
.|++||+..
T Consensus 881 ~Irvid~~~ 889 (1057)
T PLN02919 881 LIRYLDLNK 889 (1057)
T ss_pred EEEEEECCC
Confidence 999999953
No 286
>KOG1920|consensus
Probab=97.06 E-value=0.0031 Score=58.05 Aligned_cols=58 Identities=14% Similarity=0.273 Sum_probs=42.6
Q ss_pred EEEEECCCCCEEEEeecCcceecC-CcEEEEeecCcEEEec-c-CCcEEEEEEeeCCCeeeec
Q psy5876 41 TDVEWDPTGRYVMSGVSLWKTKAD-TGYWQWSFQGKIIKRF-N-SPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 41 ~~i~wsPdG~~lat~s~~~~~~~D-~~i~iW~~~g~~l~~~-~-~~~v~~l~wsP~~~~l~s~ 100 (143)
++|+|--||+|+|+..-.. ..+ ..|++||-+|.+-..- + ...=.+++|.|.|..+++-
T Consensus 199 ~~IsWRgDg~~fAVs~~~~--~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~i 259 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVES--ETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAI 259 (1265)
T ss_pred ceEEEccCCcEEEEEEEec--cCCceeEEEecccchhhcccCcccccccceeecCCCCeEeee
Confidence 3599999999999965211 124 7899999997765543 2 3345689999999999875
No 287
>KOG1587|consensus
Probab=96.99 E-value=0.0042 Score=53.75 Aligned_cols=110 Identities=19% Similarity=0.205 Sum_probs=77.7
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceE--E---ee--e-ccCceEEEEECCCCCE--EEEeecCcceecCCcEEEEe
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSV--M---NA--A-EHHQATDVEWDPTGRY--VMSGVSLWKTKADTGYWQWS 71 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~--~---~~--~-~~~~v~~i~wsPdG~~--lat~s~~~~~~~D~~i~iW~ 71 (143)
.|+|.-..+++||. -+|.|.+||+..+.. . .. . |..+|+.+.|-.+-.- |+++| .|++|..|+
T Consensus 249 ~f~p~~p~ll~gG~-y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s------sDG~i~~W~ 321 (555)
T KOG1587|consen 249 KFCPFDPNLLAGGC-YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS------SDGSICSWD 321 (555)
T ss_pred EeccCCcceEEeec-cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe------cCCcEeeee
Confidence 57787777777776 599999999886543 1 11 1 2257999999887666 89998 599999998
Q ss_pred ecCcEE-------Ee-c-------cCCcEEEEEEeeCC-CeeeecCchhhHHh-hhhhhchhcc
Q psy5876 72 FQGKII-------KR-F-------NSPTFCQLRWRPRP-ASLLSKEQVDKIKK-SLKKYTPAFE 118 (143)
Q Consensus 72 ~~g~~l-------~~-~-------~~~~v~~l~wsP~~-~~l~s~s~d~~i~~-~~~~~~~~~e 118 (143)
++.-.+ .. . ....+..+.|.|.. ..++-|++++.|-+ +-+.|...++
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence 863211 11 1 12368899998765 57788999999988 5555555554
No 288
>KOG3617|consensus
Probab=96.97 E-value=0.00094 Score=59.86 Aligned_cols=97 Identities=11% Similarity=0.090 Sum_probs=71.2
Q ss_pred CeEecCCCEEEEEecC--CCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876 1 MKLRMRGTHIVLAELR--DTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~--~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l 77 (143)
++|.|--.++|+++++ ..|.|.|+- ++|++-...+ ...+++++|+|.--.||.|= .-+-+-+|..+.+..
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gw------e~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGW------EMGVSDVQKTNTTET 93 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhcc------ccceeEEEecCCcee
Confidence 4799999999999987 568888874 4444322111 13467899999987777665 345677898877766
Q ss_pred Eec---cCCcEEEEEEeeCCCeeeecCchh
Q psy5876 78 KRF---NSPTFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 78 ~~~---~~~~v~~l~wsP~~~~l~s~s~d~ 104 (143)
++. ++.++..+.|||+|..|+|+-.-+
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g 123 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPG 123 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCc
Confidence 654 467899999999999999975443
No 289
>KOG1188|consensus
Probab=96.93 E-value=0.0065 Score=49.33 Aligned_cols=86 Identities=13% Similarity=0.185 Sum_probs=60.5
Q ss_pred EEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECC--CCCEEEEeecCcceecCCcEEEEeec--CcE-EE--e
Q psy5876 9 HIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDP--TGRYVMSGVSLWKTKADTGYWQWSFQ--GKI-IK--R 79 (143)
Q Consensus 9 ~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsP--dG~~lat~s~~~~~~~D~~i~iW~~~--g~~-l~--~ 79 (143)
.+|++- .+|.|++||..+++.+..+.. ..++.+.|.. .+.-+.+|+ .|++|++||+. ++. .. +
T Consensus 42 ~vav~l--Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~s------sDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 42 AVAVSL--SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCS------SDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eEEEEe--cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEec------cCCeEEEEEeecchhhhheecc
Confidence 355543 489999999999887776642 3577888877 355677787 59999999994 332 11 2
Q ss_pred cc-CCcEEEEEEeeCCCeeeecCc
Q psy5876 80 FN-SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 80 ~~-~~~v~~l~wsP~~~~l~s~s~ 102 (143)
.+ ..++.+++-.-+++.+++|.+
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE 137 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTE 137 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccc
Confidence 22 357888888778888888754
No 290
>KOG4532|consensus
Probab=96.92 E-value=0.013 Score=46.57 Aligned_cols=87 Identities=8% Similarity=-0.015 Sum_probs=63.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC-ce-EEeeec---cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FS-VMNAAE---HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-- 73 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~-~~~~~~---~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-- 73 (143)
+++|||++++++.| +...|-+|.++. .+ ...+.. ...-.+.+||.....+|+++ -|+.+.|||+.
T Consensus 164 ~~~snd~~~~~~Vg--ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~------Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVG--DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF------QDGTCAIYDVRNM 235 (344)
T ss_pred eEEcCCCceEEEec--CCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe------cCCcEEEEEeccc
Confidence 36899999999998 567888998874 22 222221 12345678999999999999 59999999995
Q ss_pred CcEEEec------cCCcEEEEEEeeCCC
Q psy5876 74 GKIIKRF------NSPTFCQLRWRPRPA 95 (143)
Q Consensus 74 g~~l~~~------~~~~v~~l~wsP~~~ 95 (143)
+...... +...+..+.|+|.|.
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCc
Confidence 5444322 245689999998775
No 291
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.88 E-value=0.0088 Score=52.20 Aligned_cols=89 Identities=11% Similarity=0.133 Sum_probs=51.7
Q ss_pred eEecCCCEEEEEecC----------CCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEE--
Q psy5876 2 KLRMRGTHIVLAELR----------DTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ-- 69 (143)
Q Consensus 2 ~~SPdG~~las~~~~----------~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i-- 69 (143)
+|||||+.|+....+ ..+.+.+.+++.++....+ ...|+.+.|||||+.||.-. ++.+++
T Consensus 403 sWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~-~g~Issl~wSpDG~RiA~i~-------~g~v~Va~ 474 (591)
T PRK13616 403 SWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRV-PGPISELQLSRDGVRAAMII-------GGKVYLAV 474 (591)
T ss_pred eECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhcc-CCCcCeEEECCCCCEEEEEE-------CCEEEEEE
Confidence 699999988877511 0112222233333322211 24699999999999998876 345554
Q ss_pred -Eee-cCc-EEE---ec---cCCcEEEEEEeeCCCeee
Q psy5876 70 -WSF-QGK-IIK---RF---NSPTFCQLRWRPRPASLL 98 (143)
Q Consensus 70 -W~~-~g~-~l~---~~---~~~~v~~l~wsP~~~~l~ 98 (143)
=.- .|. .+. .. ..+.+.++.|.+++..++
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V 512 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVV 512 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCEEEE
Confidence 222 243 121 11 123468899999998554
No 292
>KOG1240|consensus
Probab=96.86 E-value=0.0054 Score=56.70 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=45.8
Q ss_pred ecCCCEEEEEecCCCCeEEEEECCC-------ceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee
Q psy5876 4 RMRGTHIVLAELRDTGSLEFVDTGD-------FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF 72 (143)
Q Consensus 4 SPdG~~las~~~~~dg~i~iWd~~~-------~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~ 72 (143)
+|++.++++|+ .||+|++||... .+...+. +...+..+..-+.|.++|.++ .||.|.+.++
T Consensus 1058 ~~~~s~FvsgS--~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t------~DG~v~~~~i 1127 (1431)
T KOG1240|consen 1058 SEHTSLFVSGS--DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST------KDGSVRVLRI 1127 (1431)
T ss_pred CCCCceEEEec--CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc------CCCeEEEEEc
Confidence 57779999999 799999999663 1122222 346788999999999999998 4777766554
No 293
>KOG2066|consensus
Probab=96.83 E-value=0.0095 Score=52.95 Aligned_cols=88 Identities=11% Similarity=0.126 Sum_probs=62.5
Q ss_pred CCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCC-----CCEEEEeecCcceecCCcEEEEeec--CcEE
Q psy5876 6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPT-----GRYVMSGVSLWKTKADTGYWQWSFQ--GKII 77 (143)
Q Consensus 6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPd-----G~~lat~s~~~~~~~D~~i~iW~~~--g~~l 77 (143)
+|.|+++|+ .||+|.|-.+.+.+...++. +-++.+|+++|| .+.+++|+ +.++.++.-. |+..
T Consensus 82 ~Gey~asCS--~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG-------~aglvL~er~wlgnk~ 152 (846)
T KOG2066|consen 82 EGEYVASCS--DDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGG-------MAGLVLSERNWLGNKD 152 (846)
T ss_pred CCceEEEec--CCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecC-------cceEEEehhhhhcCcc
Confidence 699999999 69999999988776655543 358999999999 77888888 3346665432 3321
Q ss_pred ---EeccCCcEEEEEEeeCCCeeeecCchh
Q psy5876 78 ---KRFNSPTFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 78 ---~~~~~~~v~~l~wsP~~~~l~s~s~d~ 104 (143)
-....++|.++.|+ |..++=+++++
T Consensus 153 ~v~l~~~eG~I~~i~W~--g~lIAWand~G 180 (846)
T KOG2066|consen 153 SVVLSEGEGPIHSIKWR--GNLIAWANDDG 180 (846)
T ss_pred ceeeecCccceEEEEec--CcEEEEecCCC
Confidence 12235688888886 55666665554
No 294
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.79 E-value=0.0044 Score=36.24 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=30.3
Q ss_pred CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876 38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII 77 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l 77 (143)
..|..++|+|....||.++ .++.+.|+.++|+.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t------~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGT------EDGEVLVYRLNWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEE------CCCeEEEEECCCcCc
Confidence 4699999999999999999 689999999987765
No 295
>PRK10115 protease 2; Provisional
Probab=96.73 E-value=0.028 Score=49.83 Aligned_cols=96 Identities=10% Similarity=0.056 Sum_probs=56.5
Q ss_pred eEecCCCEEEEEecCCCC----eEEEEECCCceEEee-eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cC-
Q psy5876 2 KLRMRGTHIVLAELRDTG----SLEFVDTGDFSVMNA-AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QG- 74 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg----~i~iWd~~~~~~~~~-~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g- 74 (143)
.|||||++||.+.- .+| +|++-|+.+++.+.. ..... ..++|+|||+.|+-............++.+++ ++
T Consensus 133 ~~Spdg~~la~~~d-~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 133 AITPDNTIMALAED-FLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred EECCCCCEEEEEec-CCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence 68999999998742 223 688889888764322 22222 56999999997776664211001245666776 34
Q ss_pred ---cEEEeccCCcEEEEEEee-CCCeeee
Q psy5876 75 ---KIIKRFNSPTFCQLRWRP-RPASLLS 99 (143)
Q Consensus 75 ---~~l~~~~~~~v~~l~wsP-~~~~l~s 99 (143)
.++........+-..|.+ +++.++-
T Consensus 211 ~~d~lv~~e~~~~~~~~~~~s~d~~~l~i 239 (686)
T PRK10115 211 SQDELVYEEKDDTFYVSLHKTTSKHYVVI 239 (686)
T ss_pred hHCeEEEeeCCCCEEEEEEEcCCCCEEEE
Confidence 245543333344344555 7776653
No 296
>KOG1064|consensus
Probab=96.67 E-value=0.0011 Score=63.18 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=52.0
Q ss_pred CEEEEEecC-CCCeEEEEECCC---ceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC-cEEEecc
Q psy5876 8 THIVLAELR-DTGSLEFVDTGD---FSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG-KIIKRFN 81 (143)
Q Consensus 8 ~~las~~~~-~dg~i~iWd~~~---~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g-~~l~~~~ 81 (143)
..++++|.+ +++.+.+||+.- .-++.+-|..+++.+++-|.-+.|++|+ .++.+++||+.- ++++.++
T Consensus 2303 s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg------r~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2303 SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG------RKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC------CcCcEEEeehHHHHHHHHhh
Confidence 445666655 678999999652 3356666667899999999999999999 699999999954 4455443
No 297
>KOG2066|consensus
Probab=96.60 E-value=0.011 Score=52.67 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=62.8
Q ss_pred CCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-CCc
Q psy5876 7 GTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN-SPT 84 (143)
Q Consensus 7 G~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~-~~~ 84 (143)
+++|+.|+. +|.|++.+.+-.- ...+.|... .-+|.|+|||| .|+.+.|-.+ +++...+.. ..+
T Consensus 49 ~~~~~~GtH--~g~v~~~~~~~~~-~~~~~~s~~-----~~~Gey~asCS------~DGkv~I~sl~~~~~~~~~df~rp 114 (846)
T KOG2066|consen 49 DKFFALGTH--RGAVYLTTCQGNP-KTNFDHSSS-----ILEGEYVASCS------DDGKVVIGSLFTDDEITQYDFKRP 114 (846)
T ss_pred cceeeeccc--cceEEEEecCCcc-ccccccccc-----ccCCceEEEec------CCCcEEEeeccCCccceeEecCCc
Confidence 678888884 7999999865321 222222222 77999999999 6999999988 566666554 678
Q ss_pred EEEEEEeeC-----CCeeeecCchh
Q psy5876 85 FCQLRWRPR-----PASLLSKEQVD 104 (143)
Q Consensus 85 v~~l~wsP~-----~~~l~s~s~d~ 104 (143)
+.+++++|+ ..+.++|++.+
T Consensus 115 iksial~Pd~~~~~sk~fv~GG~ag 139 (846)
T KOG2066|consen 115 IKSIALHPDFSRQQSKQFVSGGMAG 139 (846)
T ss_pred ceeEEeccchhhhhhhheeecCcce
Confidence 999999999 56889998876
No 298
>KOG1354|consensus
Probab=96.57 E-value=0.01 Score=48.57 Aligned_cols=63 Identities=16% Similarity=0.312 Sum_probs=45.7
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC-ceEEeee--------------ccC---ceEEEEECCCCCEEEEeecCccee
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FSVMNAA--------------EHH---QATDVEWDPTGRYVMSGVSLWKTK 62 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~~~~~~--------------~~~---~v~~i~wsPdG~~lat~s~~~~~~ 62 (143)
+.||++|+||++=. --+|.+||++. .+.+.+. +.. .-..|+||-++.+++|||
T Consensus 278 vKFs~sGryilsRD---yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGs------ 348 (433)
T KOG1354|consen 278 VKFSHSGRYILSRD---YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGS------ 348 (433)
T ss_pred eEEccCCcEEEEec---cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccc------
Confidence 57999999999854 37999999862 2222221 111 234789999999999999
Q ss_pred cCCcEEEEee
Q psy5876 63 ADTGYWQWSF 72 (143)
Q Consensus 63 ~D~~i~iW~~ 72 (143)
-.+-+++++.
T Consensus 349 y~n~frvf~~ 358 (433)
T KOG1354|consen 349 YNNVFRVFNL 358 (433)
T ss_pred ccceEEEecC
Confidence 4778888875
No 299
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.55 E-value=0.0028 Score=32.03 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.1
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVD 25 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd 25 (143)
+.|+|+++++++++ .||.+++||
T Consensus 18 ~~~~~~~~~~~~~~--~d~~~~~~~ 40 (40)
T smart00320 18 VAFSPDGKYLASAS--DDGTIKLWD 40 (40)
T ss_pred EEECCCCCEEEEec--CCCeEEEcC
Confidence 46899999999998 689999996
No 300
>KOG1920|consensus
Probab=96.50 E-value=0.0081 Score=55.43 Aligned_cols=113 Identities=12% Similarity=0.182 Sum_probs=76.1
Q ss_pred CeEecCCCEEEEEecC--CC-CeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876 1 MKLRMRGTHIVLAELR--DT-GSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~--~d-g~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~ 75 (143)
|+|-=||+|+|+.... .+ .+|++||.+ |.+-.+.+ ...=.+++|-|.|..+|+-.+.+ .|+.|.+|.-+|-
T Consensus 201 IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~---sd~~IvffErNGL 276 (1265)
T KOG1920|consen 201 ISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT---SDSDIVFFERNGL 276 (1265)
T ss_pred EEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecC---CCCcEEEEecCCc
Confidence 5788999999995432 23 689999988 54433332 12346789999999999886532 4667989988774
Q ss_pred EEEe----cc--CCcEEEEEEeeCCCeeee---cCchhhHH----hhhhhhchhc
Q psy5876 76 IIKR----FN--SPTFCQLRWRPRPASLLS---KEQVDKIK----KSLKKYTPAF 117 (143)
Q Consensus 76 ~l~~----~~--~~~v~~l~wsP~~~~l~s---~s~d~~i~----~~~~~~~~~~ 117 (143)
.-.. ++ ...|..++|+.++..|+. ..+...|+ +|+.=|.|++
T Consensus 277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~ 331 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE 331 (1265)
T ss_pred cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE
Confidence 3322 22 224899999999998887 33333344 5665555543
No 301
>KOG4714|consensus
Probab=96.46 E-value=0.0022 Score=50.55 Aligned_cols=96 Identities=9% Similarity=0.148 Sum_probs=63.3
Q ss_pred CCCEEEEEecC---CCCeEEEEECCCceEEe--eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-EE--
Q psy5876 6 RGTHIVLAELR---DTGSLEFVDTGDFSVMN--AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-II-- 77 (143)
Q Consensus 6 dG~~las~~~~---~dg~i~iWd~~~~~~~~--~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-~l-- 77 (143)
.|++|.+++.+ .-+....|+.+-.+.+. ......|+.++=+|.-+++++++. .|+.+-+||.... ..
T Consensus 143 ~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt-----~dg~~~l~d~rn~~~p~S 217 (319)
T KOG4714|consen 143 HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGT-----DDGIVGLWDARNVAMPVS 217 (319)
T ss_pred cccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEec-----CCCeEEEEEcccccchHH
Confidence 45666665432 22345556654322211 112245999999998888777775 5888999999533 21
Q ss_pred -EeccCCcEEEEEEeeC-CCeeeecCchhhH
Q psy5876 78 -KRFNSPTFCQLRWRPR-PASLLSKEQVDKI 106 (143)
Q Consensus 78 -~~~~~~~v~~l~wsP~-~~~l~s~s~d~~i 106 (143)
.+.+...++.+.|+|. |..|+++++|+.+
T Consensus 218 ~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl 248 (319)
T KOG4714|consen 218 LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL 248 (319)
T ss_pred HHHHhhhhhhheeccCCCchheeEecCCCcE
Confidence 2345789999999997 4689999999865
No 302
>KOG4227|consensus
Probab=96.46 E-value=0.022 Score=47.42 Aligned_cols=90 Identities=11% Similarity=0.123 Sum_probs=70.0
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc----CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE-
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH----HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI- 76 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~----~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~- 76 (143)
+|....++|.+|+ .+|+|..-|+++-+.+..+.+ ..|+.+.-+|....|++.+ .++.|-+||...++
T Consensus 112 ~F~~~N~~~~SG~--~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t------~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 112 EFDLENRFLYSGE--RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT------RAKLVSFIDNRDRQN 183 (609)
T ss_pred EEccCCeeEecCC--CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe------cCceEEEEeccCCCC
Confidence 5666778888888 699999999998877766533 3699999999999999998 58899999995332
Q ss_pred ----EEecc-CCcEEEEEEeeCCCeeee
Q psy5876 77 ----IKRFN-SPTFCQLRWRPRPASLLS 99 (143)
Q Consensus 77 ----l~~~~-~~~v~~l~wsP~~~~l~s 99 (143)
+.-.. ...++.+.|+|--+.|+.
T Consensus 184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~ 211 (609)
T KOG4227|consen 184 PISLVLPANSGKNFYTAEFHPETPALIL 211 (609)
T ss_pred CCceeeecCCCccceeeeecCCCceeEE
Confidence 22122 557899999999876663
No 303
>KOG1334|consensus
Probab=96.40 E-value=0.0017 Score=54.83 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=55.1
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG 74 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g 74 (143)
|-|...|+++|+ +-|.|-||+-.+++++.-++ ..-|+++.=+|---.|||++ .|.-||||...+
T Consensus 402 fGPrsEyVvSGS--DCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG------id~DVKIWTP~~ 467 (559)
T KOG1334|consen 402 FGPRSEYVVSGS--DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG------IDHDVKIWTPLT 467 (559)
T ss_pred ccCccceEEecC--ccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC------CccceeeecCCc
Confidence 679999999998 67999999999998877554 34689999999999999999 799999999854
No 304
>KOG0644|consensus
Probab=96.40 E-value=0.0012 Score=58.84 Aligned_cols=64 Identities=19% Similarity=0.302 Sum_probs=57.2
Q ss_pred CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc--CCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN--SPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
..|+++.|+..|+||+||+ .|..++||+. ++.++.... ...+.+++.+.+..+++++|.|..||
T Consensus 191 naVyca~fDrtg~~Iitgs------dd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 191 NAVYCAIFDRTGRYIITGS------DDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred hheeeeeeccccceEeecC------ccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 4699999999999999999 5889999998 578888764 67899999999999999999998877
No 305
>KOG1064|consensus
Probab=96.38 E-value=0.0075 Score=57.87 Aligned_cols=99 Identities=9% Similarity=0.180 Sum_probs=74.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--C--
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--G-- 74 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g-- 74 (143)
+.|+.+|+....+. .||.+-+|.+.. +..... |....++..|-- ..+++++... .++.+.+||.. +
T Consensus 2257 ~~f~~qGnk~~i~d--~dg~l~l~q~~p-k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~---d~~n~~lwDtl~~~~~ 2328 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVD--GDGDLSLWQASP-KPYTSWQCHNKALSDFRFIG--SLLATAGRSS---DNRNVCLWDTLLPPMN 2328 (2439)
T ss_pred hhhcccCCceeeec--cCCceeecccCC-cceeccccCCccccceeeee--hhhhccccCC---CCCcccchhcccCccc
Confidence 35888999998887 599999999883 444333 223456666654 5577776432 46689999983 3
Q ss_pred cEEEeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 75 KIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 75 ~~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
-++++.|...+..+++-|+-+.|+||+.+++|.
T Consensus 2329 s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2329 SLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred ceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 277888889999999999999999999999874
No 306
>KOG1354|consensus
Probab=96.36 E-value=0.02 Score=46.91 Aligned_cols=94 Identities=11% Similarity=0.269 Sum_probs=63.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC-ce----EEeee-----c---------cCceEEEEECCCCC--EEEEeecCc
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FS----VMNAA-----E---------HHQATDVEWDPTGR--YVMSGVSLW 59 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~----~~~~~-----~---------~~~v~~i~wsPdG~--~lat~s~~~ 59 (143)
|-|.-.|.+||+|. .+|.|.++.-+. .+ ....+ + ...|+.|.|-++|. +++..+
T Consensus 31 vef~~~Ge~LatGd--kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst--- 105 (433)
T KOG1354|consen 31 VEFDHYGERLATGD--KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST--- 105 (433)
T ss_pred EEeecccceEeecC--CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec---
Confidence 35788999999998 579999988542 11 11111 1 12578999999887 334334
Q ss_pred ceecCCcEEEEeecCcEEEe---------------------------------------ccCCcEEEEEEeeCCCeeeec
Q psy5876 60 KTKADTGYWQWSFQGKIIKR---------------------------------------FNSPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 60 ~~~~D~~i~iW~~~g~~l~~---------------------------------------~~~~~v~~l~wsP~~~~l~s~ 100 (143)
.|+++++|-+..+.... .|.-.|++++++.|++.++|+
T Consensus 106 ---NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 106 ---NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred ---CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 49999999874211100 112368999999999999998
Q ss_pred Cc
Q psy5876 101 EQ 102 (143)
Q Consensus 101 s~ 102 (143)
-+
T Consensus 183 Dd 184 (433)
T KOG1354|consen 183 DD 184 (433)
T ss_pred cc
Confidence 54
No 307
>KOG0280|consensus
Probab=96.30 E-value=0.06 Score=43.22 Aligned_cols=99 Identities=15% Similarity=0.290 Sum_probs=69.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceE--Eeee--ccCceEEEEECCCC-CEEEEeecCcceecCCcEEEEeec--
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSV--MNAA--EHHQATDVEWDPTG-RYVMSGVSLWKTKADTGYWQWSFQ-- 73 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~--~~~~--~~~~v~~i~wsPdG-~~lat~s~~~~~~~D~~i~iW~~~-- 73 (143)
+.|++-|..++++- .+|.+.+-+.....+ +++. |..++..+.|+-.. ..+.+|+ .|+.+..||..
T Consensus 127 lD~~~~~~~i~vs~--s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGg------DD~~l~~~D~R~p 198 (339)
T KOG0280|consen 127 LDISTSGTKIFVSD--SRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGG------DDGSLSCWDIRIP 198 (339)
T ss_pred EEeeccCceEEEEc--CCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecC------CCceEEEEEecCC
Confidence 35899999988876 589888555443222 2222 23567777777433 4778888 59999999996
Q ss_pred CcEEEe---ccCCcEEEEEEee-CCCeeeecCchhhHH
Q psy5876 74 GKIIKR---FNSPTFCQLRWRP-RPASLLSKEQVDKIK 107 (143)
Q Consensus 74 g~~l~~---~~~~~v~~l~wsP-~~~~l~s~s~d~~i~ 107 (143)
++.+.+ .|..+|.++.=+| +|..|+||+.|..|+
T Consensus 199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~ 236 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIR 236 (339)
T ss_pred cceeeecceeeecceEEEecCCCCCceEEEecccccee
Confidence 555543 3466888887765 478999999999887
No 308
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.29 E-value=0.057 Score=43.50 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=59.7
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC--ceE-------EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD--FSV-------MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS 71 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~--~~~-------~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~ 71 (143)
|+|||||+.|-.+.. ..+.|.-++.+. +.. ....+....-.++-..+|.+-+++.. ..+.|.+|+
T Consensus 168 la~SpDg~tly~aDT-~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~-----~g~~v~~~~ 241 (307)
T COG3386 168 LAFSPDGKTLYVADT-PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW-----GGGRVVRFN 241 (307)
T ss_pred eEECCCCCEEEEEeC-CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc-----CCceEEEEC
Confidence 689999988877764 356777777652 111 11112233456677778877754441 123899999
Q ss_pred ecCcEEEecc--CCcEEEEEE-eeCCCeeeec
Q psy5876 72 FQGKIIKRFN--SPTFCQLRW-RPRPASLLSK 100 (143)
Q Consensus 72 ~~g~~l~~~~--~~~v~~l~w-sP~~~~l~s~ 100 (143)
.+|+++.... ...+.+++| .|+...|.-.
T Consensus 242 pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 242 PDGKLLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred CCCcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence 9999887653 467777888 5666666543
No 309
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.28 E-value=0.05 Score=42.37 Aligned_cols=94 Identities=15% Similarity=0.072 Sum_probs=57.8
Q ss_pred CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEe--ecCcEE
Q psy5876 1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS--FQGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~--~~g~~l 77 (143)
.++||||+.+|....+ ....+.++..+...... .....++.-+|+|+|...+... .+....++. .+|...
T Consensus 29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~~g~~l~~PS~d~~g~~W~v~~------~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 29 PAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-LTGGSLTRPSWDPDGWVWTVDD------GSGGVRVVRDSASGTGE 101 (253)
T ss_pred eEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-ccCCccccccccCCCCEEEEEc------CCCceEEEEecCCCcce
Confidence 3689999988775521 23455555544322211 1335788899999988766655 355555553 344422
Q ss_pred E---ecc-CC-cEEEEEEeeCCCeeeecC
Q psy5876 78 K---RFN-SP-TFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 78 ~---~~~-~~-~v~~l~wsP~~~~l~s~s 101 (143)
. ... .. .|.+|.+||||.+++-..
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEE
Confidence 1 122 22 899999999999887543
No 310
>KOG1645|consensus
Probab=96.26 E-value=0.019 Score=47.66 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=53.5
Q ss_pred CeEecCCC-EEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 1 MKLRMRGT-HIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 1 i~~SPdG~-~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
++|||..+ .|..++ .+.+|.|.|+.+.-++..+. +..+.+++|.-|.++++=|+. ..+.|.|||+.
T Consensus 199 lafSp~~~GLl~~as--l~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl-----~nG~VlvyD~R 266 (463)
T KOG1645|consen 199 LAFSPFNEGLLGLAS--LGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL-----QNGMVLVYDMR 266 (463)
T ss_pred hccCccccceeeeec--cCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec-----cCceEEEEEcc
Confidence 57999988 677777 57899999999877666653 468999999999998777775 57789999983
No 311
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.22 E-value=0.029 Score=49.15 Aligned_cols=101 Identities=10% Similarity=0.057 Sum_probs=67.7
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCC-----ceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGD-----FSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI 76 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~-----~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~ 76 (143)
+.+||++...+ +++|.+.|..+ .+.+.... ......+..||||+|+++++. .++.+-|.|+....
T Consensus 284 ~vkdGK~~~V~----gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank-----lS~tVSVIDv~k~k 354 (635)
T PRK02888 284 AVKAGKFKTIG----GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK-----LSPTVTVIDVRKLD 354 (635)
T ss_pred hhhCCCEEEEC----CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC-----CCCcEEEEEChhhh
Confidence 45788877764 46899999887 45555543 356788999999999999885 68899999985321
Q ss_pred -------------EEecc-CCcEEEEEEeeCCCeeeecCchhhH-Hhhhhh
Q psy5876 77 -------------IKRFN-SPTFCQLRWRPRPASLLSKEQVDKI-KKSLKK 112 (143)
Q Consensus 77 -------------l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i-~~~~~~ 112 (143)
..+.. ...=.+.+|.++|....|-.-|..| |=|+.+
T Consensus 355 ~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 355 DLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 12222 2223467899999877666554433 334443
No 312
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.059 Score=43.35 Aligned_cols=98 Identities=12% Similarity=0.168 Sum_probs=67.1
Q ss_pred eEecCCCEEEEEecC---CCCeEEEEECCC-ceEEeeeccC--ceEEEEECCCCCEEEEeecCc-------c--e---ec
Q psy5876 2 KLRMRGTHIVLAELR---DTGSLEFVDTGD-FSVMNAAEHH--QATDVEWDPTGRYVMSGVSLW-------K--T---KA 63 (143)
Q Consensus 2 ~~SPdG~~las~~~~---~dg~i~iWd~~~-~~~~~~~~~~--~v~~i~wsPdG~~lat~s~~~-------~--~---~~ 63 (143)
.|||||++|-..-.+ ..|.|=+||... ++.+-.+..+ ..-.+.|.+|||.++.+.... | + .+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 489999999876432 348899999774 3444444333 457899999999998886511 1 1 24
Q ss_pred CCcEEEEe-ecCcEEEec--c----CCcEEEEEEeeCCCeeee
Q psy5876 64 DTGYWQWS-FQGKIIKRF--N----SPTFCQLRWRPRPASLLS 99 (143)
Q Consensus 64 D~~i~iW~-~~g~~l~~~--~----~~~v~~l~wsP~~~~l~s 99 (143)
...+.+-| .+|.+|.+. . ...+.+++.-+||....-
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEE
Confidence 55677778 589888653 1 346888888888875553
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.21 E-value=0.17 Score=40.87 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=50.9
Q ss_pred CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEeccCCcEEEEEEeeCCCeeeecCchhh
Q psy5876 38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDK 105 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~~~~v~~l~wsP~~~~l~s~s~d~~ 105 (143)
..+-+|+++++|+++++.|. ..+.+.+||. +|+++....-..++.++-.+++ .++|.+.-+.
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsP-----rGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG~G~~ 279 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSP-----RGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSGQGQL 279 (305)
T ss_pred CceEEEEEeCCCCEEEEECC-----CCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCCCccE
Confidence 57999999999999988884 5788999988 5888887777888889888888 7777665443
No 314
>KOG2041|consensus
Probab=96.10 E-value=0.022 Score=50.68 Aligned_cols=98 Identities=10% Similarity=0.191 Sum_probs=70.9
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCc----eE--------E---eee--ccCceEEEEECCCCCEEEEeecCcceec
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDF----SV--------M---NAA--EHHQATDVEWDPTGRYVMSGVSLWKTKA 63 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~----~~--------~---~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~ 63 (143)
+.|+.+..|||.|| .||.+++-.+++. +. + +++ |...|.-+.|+-+.+.|-|.. .
T Consensus 20 ~~WNke~gyIAcgG--~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD------t 91 (1189)
T KOG2041|consen 20 AEWNKESGYIACGG--ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD------T 91 (1189)
T ss_pred EEEcccCCeEEecc--ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC------C
Confidence 47899999999999 6999999876531 10 0 112 234689999999888876665 5
Q ss_pred CCcEEEEee-cCcEEEe----ccCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 64 DTGYWQWSF-QGKIIKR----FNSPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 64 D~~i~iW~~-~g~~l~~----~~~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
++-|.+|=+ .|.-+-. -....|.+++|+.+|+.+.-.-+|+.|
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV 139 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence 788889987 5654332 235679999999999988776666644
No 315
>KOG2041|consensus
Probab=96.08 E-value=0.0073 Score=53.54 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=72.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEE----eeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVM----NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~----~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~ 76 (143)
+.|+-+.+.|.++. .+|.|-+|-+-++.=. ..-...-|.+++|..||..|+..- .|+.|.+=+++|..
T Consensus 77 vTWNe~~QKLTtSD--t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvY------eDGavIVGsvdGNR 148 (1189)
T KOG2041|consen 77 VTWNENNQKLTTSD--TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVY------EDGAVIVGSVDGNR 148 (1189)
T ss_pred EEeccccccccccC--CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEE------ccCCEEEEeeccce
Confidence 36888888888877 5899999997765321 111234588999999999999998 68999888888887
Q ss_pred EEec--cCCcEEEEEEeeCCCeeeecCchhh
Q psy5876 77 IKRF--NSPTFCQLRWRPRPASLLSKEQVDK 105 (143)
Q Consensus 77 l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~ 105 (143)
+... ....+.++.|+||.+.++-+-..++
T Consensus 149 IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange 179 (1189)
T KOG2041|consen 149 IWGKELKGQLLAHVLWSEDLEQALFKKANGE 179 (1189)
T ss_pred ecchhcchheccceeecccHHHHHhhhcCCc
Confidence 7543 2446778999999987776654443
No 316
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.99 E-value=0.073 Score=40.76 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=47.6
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCceEEeee----------------ccCceEEEEECCCCCEEEEeecCcceecCCc
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA----------------EHHQATDVEWDPTGRYVMSGVSLWKTKADTG 66 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~----------------~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~ 66 (143)
+..+|++|++-+ .+|.+++||+.+++.+... ....|..+..+.+|.=|++-+ ++.
T Consensus 18 l~~~~~~Ll~iT--~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-------ng~ 88 (219)
T PF07569_consen 18 LECNGSYLLAIT--SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-------NGD 88 (219)
T ss_pred EEeCCCEEEEEe--CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-------CCC
Confidence 467889988887 6899999999987765432 224688899999999888877 455
Q ss_pred EEEEeec
Q psy5876 67 YWQWSFQ 73 (143)
Q Consensus 67 i~iW~~~ 73 (143)
.+.|+.+
T Consensus 89 ~y~y~~~ 95 (219)
T PF07569_consen 89 SYSYSPD 95 (219)
T ss_pred EEEeccc
Confidence 6677775
No 317
>KOG2695|consensus
Probab=95.98 E-value=0.022 Score=46.58 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=54.6
Q ss_pred CCCEEEEEecCCCCeEEEEECCCceE---EeeeccC----ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEE
Q psy5876 6 RGTHIVLAELRDTGSLEFVDTGDFSV---MNAAEHH----QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKII 77 (143)
Q Consensus 6 dG~~las~~~~~dg~i~iWd~~~~~~---~~~~~~~----~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l 77 (143)
++++|.+++ .+|+|.+||....++ +.+++.+ .-.-+--.|....|++++ .|=--+||+++ |+++
T Consensus 310 s~q~LmaS~--M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G------dDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 310 SQQKLMASD--MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG------DDCYTRIWSLDSGHLL 381 (425)
T ss_pred ccceEeecc--CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc------CeeEEEEEecccCcee
Confidence 567888888 589999999875555 6665422 122345567888899888 36677899995 8888
Q ss_pred Eecc------CCcEEEEEEee
Q psy5876 78 KRFN------SPTFCQLRWRP 92 (143)
Q Consensus 78 ~~~~------~~~v~~l~wsP 92 (143)
.+.+ ...+++++|+.
T Consensus 382 ~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 382 CTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eccCCCCccccccccceehhc
Confidence 7754 22466666643
No 318
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.85 E-value=0.016 Score=33.86 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=22.5
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECC
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTG 27 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~ 27 (143)
++|+|+...||.+. .+|.|.++.++
T Consensus 17 ~~w~P~mdLiA~~t--~~g~v~v~Rl~ 41 (47)
T PF12894_consen 17 MSWCPTMDLIALGT--EDGEVLVYRLN 41 (47)
T ss_pred EEECCCCCEEEEEE--CCCeEEEEECC
Confidence 47999999999998 69999999983
No 319
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.21 Score=41.07 Aligned_cols=95 Identities=16% Similarity=0.180 Sum_probs=68.7
Q ss_pred CeEecCCCEEEEEecC-CCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876 1 MKLRMRGTHIVLAELR-DTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK 78 (143)
Q Consensus 1 i~~SPdG~~las~~~~-~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~ 78 (143)
++++|+|+++-.+..+ .++++.+-|..+.+.+.+..- ..-..++++|+|.++..+.. .++.+.+.+.++..+.
T Consensus 121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~-----~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNS-----DDNTVSVIDTSGNSVV 195 (381)
T ss_pred EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEec-----CCCeEEEEeCCCccee
Confidence 4789999988887642 268899999888887766432 22389999999997776663 5889999998776555
Q ss_pred e------cc-CCcEEEEEEeeCCCeeeec
Q psy5876 79 R------FN-SPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 79 ~------~~-~~~v~~l~wsP~~~~l~s~ 100 (143)
. .. ...=..+.++|+|..+...
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEE
Confidence 3 11 2234678999999955543
No 320
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.76 E-value=0.029 Score=45.58 Aligned_cols=92 Identities=14% Similarity=0.227 Sum_probs=58.9
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCc------eEEe-----e-----ec--cCceEEEEECCCCCEEEEeecCcceecC
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDF------SVMN-----A-----AE--HHQATDVEWDPTGRYVMSGVSLWKTKAD 64 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~------~~~~-----~-----~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D 64 (143)
|+|.-..+.--+. ..|.|++-|+..- +.+. . ++ ...|+++.|+|+||||++-+ =
T Consensus 229 Fhp~~cn~fmYSs-SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-------y 300 (460)
T COG5170 229 FHPEMCNVFMYSS-SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-------Y 300 (460)
T ss_pred cCHhHcceEEEec-CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-------c
Confidence 5666554443222 4799999997621 1110 0 11 13688999999999999876 4
Q ss_pred CcEEEEeec--CcEEEecc--------------CCcE---EEEEEeeCCCeeeecCc
Q psy5876 65 TGYWQWSFQ--GKIIKRFN--------------SPTF---CQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 65 ~~i~iW~~~--g~~l~~~~--------------~~~v---~~l~wsP~~~~l~s~s~ 102 (143)
.+++|||+. ..++.+.+ .+.| ..+.|+-|.+.++||+.
T Consensus 301 ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 301 LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc
Confidence 689999995 44555431 2233 46888988888888753
No 321
>KOG3617|consensus
Probab=95.56 E-value=0.024 Score=51.29 Aligned_cols=87 Identities=11% Similarity=0.207 Sum_probs=60.1
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEe--eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--CcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMN--AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GKI 76 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~--~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~~ 76 (143)
++|.|..-.|+.| . .-|.+.+|..++.+.-. ..+..++..+.|||||..++|+. .-+.+.+|.++ |+.
T Consensus 65 LCWHpe~~vLa~g-w-e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d------~~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 65 LCWHPEEFVLAQG-W-EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLD------NPGSVHLWRYDVIGEI 136 (1416)
T ss_pred hccChHHHHHhhc-c-ccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcC------CCceeEEEEeeecccc
Confidence 5788886666665 4 47999999988754322 22346899999999999999998 46778899886 664
Q ss_pred EEe--c-c--CC--cEEEEEEeeCCC
Q psy5876 77 IKR--F-N--SP--TFCQLRWRPRPA 95 (143)
Q Consensus 77 l~~--~-~--~~--~v~~l~wsP~~~ 95 (143)
... . + .. ..+++..+|++.
T Consensus 137 q~~~~~~hel~~~ltl~cfRL~~~~E 162 (1416)
T KOG3617|consen 137 QTSNIMQHELNDQLTLWCFRLSYDRE 162 (1416)
T ss_pred ccchhhhhHhhceeeEEEEecCCChH
Confidence 332 1 1 22 355666677743
No 322
>KOG1240|consensus
Probab=95.53 E-value=0.11 Score=48.50 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=61.7
Q ss_pred EEEEEecCCCCeEEEEECCCceEEe----eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEecc--
Q psy5876 9 HIVLAELRDTGSLEFVDTGDFSVMN----AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRFN-- 81 (143)
Q Consensus 9 ~las~~~~~dg~i~iWd~~~~~~~~----~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~~-- 81 (143)
.|+.+. ..+.|..||+.+...+. ...|+.|++++-+|.+.++++|+ ..|.+-+||+. +..+..++
T Consensus 1165 ~lvy~T--~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGt------s~G~l~lWDLRF~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1165 VLVYAT--DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGT------SRGQLVLWDLRFRVPILSWEHP 1236 (1431)
T ss_pred eEEEEE--eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEec------CCceEEEEEeecCceeecccCc
Confidence 455555 46889999988654332 33467899999999999999999 47788899996 66777764
Q ss_pred -CCcEEEEEEeeCC---CeeeecCc
Q psy5876 82 -SPTFCQLRWRPRP---ASLLSKEQ 102 (143)
Q Consensus 82 -~~~v~~l~wsP~~---~~l~s~s~ 102 (143)
..++..+...|-. ...++++.
T Consensus 1237 ~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred ccCCcceEEeeccCCCCceEEEecc
Confidence 3356666665554 46666654
No 323
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=95.46 E-value=0.04 Score=30.13 Aligned_cols=20 Identities=20% Similarity=0.586 Sum_probs=16.0
Q ss_pred CceEEEEECCCCCEEEEeec
Q psy5876 38 HQATDVEWDPTGRYVMSGVS 57 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~ 57 (143)
..-...+|||||++|+-++.
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEE
T ss_pred ccccCEEEecCCCEEEEEec
Confidence 45678899999999998885
No 324
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.41 E-value=0.17 Score=41.30 Aligned_cols=99 Identities=12% Similarity=0.185 Sum_probs=57.1
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECC-------CceEEee-ec------cCceEEEEECCCCCEEEEeecCcc------
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTG-------DFSVMNA-AE------HHQATDVEWDPTGRYVMSGVSLWK------ 60 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~-------~~~~~~~-~~------~~~v~~i~wsPdG~~lat~s~~~~------ 60 (143)
|+|.|+| .+++.. ....++.|.+ ..+.+.. +. ++....++|.|||+..++-+....
T Consensus 77 i~~~~~G-lyV~~~---~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~ 152 (367)
T TIGR02604 77 LAVAVGG-VYVATP---PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRP 152 (367)
T ss_pred eeEecCC-EEEeCC---CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccC
Confidence 4678898 555432 3333454654 1223322 21 345789999999997665552100
Q ss_pred -------eecCCcEEEEeecCcEEEecc--CCcEEEEEEeeCCCeeeecCch
Q psy5876 61 -------TKADTGYWQWSFQGKIIKRFN--SPTFCQLRWRPRPASLLSKEQV 103 (143)
Q Consensus 61 -------~~~D~~i~iW~~~g~~l~~~~--~~~v~~l~wsP~~~~l~s~s~d 103 (143)
....+.+.-++.+|..+.... ...-+.++|+|+|..+++...+
T Consensus 153 ~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 153 GTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 001134555666665544332 4456789999999988876543
No 325
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.40 E-value=0.25 Score=43.60 Aligned_cols=78 Identities=14% Similarity=0.272 Sum_probs=54.2
Q ss_pred CCeEEEEECCCceEEee--e-ccCceEEEEEC--CCCCEEEEeecCcceecCCcEEEEe-----ec--C---cEEEec--
Q psy5876 18 TGSLEFVDTGDFSVMNA--A-EHHQATDVEWD--PTGRYVMSGVSLWKTKADTGYWQWS-----FQ--G---KIIKRF-- 80 (143)
Q Consensus 18 dg~i~iWd~~~~~~~~~--~-~~~~v~~i~ws--PdG~~lat~s~~~~~~~D~~i~iW~-----~~--g---~~l~~~-- 80 (143)
...+.|||+..+.+-.. + ++..|.++.|. |||+.+++.+ ..+.|.++. .. + ..+.+.
T Consensus 50 ~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG------f~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i 123 (631)
T PF12234_consen 50 RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG------FPHHVLLYTQLRYDYTNKGPSWAPIRKIDI 123 (631)
T ss_pred CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE------cCcEEEEEEccchhhhcCCcccceeEEEEe
Confidence 45899999998765443 3 23578988886 7999988888 466777653 21 1 123222
Q ss_pred ---cCCcEEEEEEeeCCCeeeecC
Q psy5876 81 ---NSPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 81 ---~~~~v~~l~wsP~~~~l~s~s 101 (143)
...+|.+..|.++|..++..+
T Consensus 124 ~~~T~h~Igds~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 124 SSHTPHPIGDSIWLKDGTLVVGSG 147 (631)
T ss_pred ecCCCCCccceeEecCCeEEEEeC
Confidence 256899999999999887654
No 326
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.37 E-value=0.34 Score=39.02 Aligned_cols=95 Identities=14% Similarity=0.160 Sum_probs=51.5
Q ss_pred EecCCCEEEEEecCCCCeE-EEEECC--CceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee--cCcEE
Q psy5876 3 LRMRGTHIVLAELRDTGSL-EFVDTG--DFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--QGKII 77 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i-~iWd~~--~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g~~l 77 (143)
-+|||++++++. .|.+ .-||-. ..+...+.....+..+.|+|||...+.+. .+.++.=+. ++...
T Consensus 152 r~~dG~~vavs~---~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~-------Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 152 RSSDGRYVAVSS---RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLAR-------GGQIQFSDDPDDGETW 221 (302)
T ss_dssp E-TTS-EEEEET---TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEET-------TTEEEEEE-TTEEEEE
T ss_pred ECCCCcEEEEEC---cccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeC-------CcEEEEccCCCCcccc
Confidence 479999999986 4654 568855 24555554456899999999999866554 334433331 12221
Q ss_pred Ee----c--cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KR----F--NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~----~--~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
.+ . ..-.+.+++|+|+++..+.++.-..++
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV 257 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence 11 1 123589999999998888776554443
No 327
>KOG4532|consensus
Probab=95.26 E-value=0.13 Score=41.12 Aligned_cols=83 Identities=7% Similarity=-0.054 Sum_probs=56.5
Q ss_pred CCeEEEEECCCceEEeeecc--CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--CcEEEe---cc-CCcEEEEE
Q psy5876 18 TGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GKIIKR---FN-SPTFCQLR 89 (143)
Q Consensus 18 dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~~l~~---~~-~~~v~~l~ 89 (143)
|.++++.+++-+..-...+. -.+.+++.|||++++++.++ -+.|..|.++ +..+.+ .. .+.=...+
T Consensus 137 dht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgd------s~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 137 DHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGD------SRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred CcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecC------CCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 56666666553222112221 24889999999999999994 5677788884 444332 12 44556689
Q ss_pred EeeCCCeeeecCchhhH
Q psy5876 90 WRPRPASLLSKEQVDKI 106 (143)
Q Consensus 90 wsP~~~~l~s~s~d~~i 106 (143)
|+......+.+.+|+++
T Consensus 211 ~s~~~~~FAv~~Qdg~~ 227 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTC 227 (344)
T ss_pred eccCcceEEEEecCCcE
Confidence 99999999999999875
No 328
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=95.25 E-value=0.034 Score=30.42 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=16.6
Q ss_pred eEecCCCEEEEEecCCC--CeEEEE
Q psy5876 2 KLRMRGTHIVLAELRDT--GSLEFV 24 (143)
Q Consensus 2 ~~SPdG~~las~~~~~d--g~i~iW 24 (143)
+|||||++|+-++. .+ |...||
T Consensus 15 ~~SpDGk~i~f~s~-~~~~g~~diy 38 (39)
T PF07676_consen 15 AWSPDGKYIYFTSN-RNDRGSFDIY 38 (39)
T ss_dssp EE-TTSSEEEEEEE-CT--SSEEEE
T ss_pred EEecCCCEEEEEec-CCCCCCcCEE
Confidence 69999999998875 45 777776
No 329
>KOG4640|consensus
Probab=95.25 E-value=0.038 Score=48.13 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=51.6
Q ss_pred CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc--CCcEE-EEEEeeCCCeeeecCchhhHH
Q psy5876 38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN--SPTFC-QLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~--~~~v~-~l~wsP~~~~l~s~s~d~~i~ 107 (143)
..+.-+.|+|-=..||++. .++.+-|.-++-+.+-..+ ..++. +++|+|||+.|+-|-.|++|+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t------~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~ 87 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRT------EKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIR 87 (665)
T ss_pred cceEEEEEcCccchhheec------cCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEE
Confidence 3578899999999999999 4777777777766665554 33555 999999999999999999886
No 330
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.08 E-value=0.16 Score=27.74 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=28.8
Q ss_pred cCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEE
Q psy5876 5 MRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEW 45 (143)
Q Consensus 5 PdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~w 45 (143)
|||++|.++.. .+++|.++|..+++.+....- .....++|
T Consensus 1 pd~~~lyv~~~-~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNS-GSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeC-CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 89999988876 478999999998877766532 23344444
No 331
>KOG1334|consensus
Probab=95.03 E-value=0.044 Score=46.52 Aligned_cols=99 Identities=15% Similarity=0.120 Sum_probs=73.1
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--c-CceEEEEECC--CCCEEEEeecCcceecCCcEEEEee--c
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--H-HQATDVEWDP--TGRYVMSGVSLWKTKADTGYWQWSF--Q 73 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~-~~v~~i~wsP--dG~~lat~s~~~~~~~D~~i~iW~~--~ 73 (143)
|.|...|..|++++ +|-.|.+||=.+++....++ | ..|....|-| +.+.|++++ .|+.+++=.+ .
T Consensus 148 V~FN~~Gd~l~SgS--DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s------~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 148 VHFNQRGDVLASGS--DDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS------RDGQVRVSEILET 219 (559)
T ss_pred eeecccCceeeccC--ccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc------ccCceeeeeeccc
Confidence 46888999999999 78999999977776666654 2 3566666777 456888888 6999987655 4
Q ss_pred CcEEEe----ccCCcEEEEEEeeCCC-eeeecCchhhHH
Q psy5876 74 GKIIKR----FNSPTFCQLRWRPRPA-SLLSKEQVDKIK 107 (143)
Q Consensus 74 g~~l~~----~~~~~v~~l~wsP~~~-~l~s~s~d~~i~ 107 (143)
|.+... .+.++|..++.-|+.+ .+.|+++|..+.
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~ 258 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVF 258 (559)
T ss_pred cceecceecccccCccceeeecCCCCCccccccccccee
Confidence 544422 2467899999988864 677888887654
No 332
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=94.97 E-value=0.079 Score=43.11 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=39.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCce-EEeee--------------ccCce---EEEEECCCCCEEEEeec
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS-VMNAA--------------EHHQA---TDVEWDPTGRYVMSGVS 57 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~-~~~~~--------------~~~~v---~~i~wsPdG~~lat~s~ 57 (143)
+.|||+|+||++-. --++.|||++.-+ ++.+. +...| ..|.||-|.+++.+||-
T Consensus 286 ~kFs~ngryIlsRd---yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 286 FKFSDNGRYILSRD---YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred eEEcCCCcEEEEec---cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc
Confidence 47999999999865 4799999987432 33332 11122 46899999999999984
No 333
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.86 E-value=0.63 Score=37.56 Aligned_cols=102 Identities=12% Similarity=0.151 Sum_probs=54.7
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC-c-eEEeee------ccCceEEEEECCC----CCEEEEeecC--cceecCCc
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-F-SVMNAA------EHHQATDVEWDPT----GRYVMSGVSL--WKTKADTG 66 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~-~~~~~~------~~~~v~~i~wsPd----G~~lat~s~~--~~~~~D~~ 66 (143)
|+|.|||+.+++- ..|.|++.+.+. . ..+... .......++++|+ +...++.+.. .....++.
T Consensus 7 ~a~~pdG~l~v~e---~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~ 83 (331)
T PF07995_consen 7 MAFLPDGRLLVAE---RSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNR 83 (331)
T ss_dssp EEEETTSCEEEEE---TTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEE
T ss_pred EEEeCCCcEEEEe---CCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCccee
Confidence 5899999888764 479999999332 1 122222 1246899999995 5544444421 00001123
Q ss_pred EEEEeecCc--------EE-Eecc-----CCcEEEEEEeeCCCeeeecCchhh
Q psy5876 67 YWQWSFQGK--------II-KRFN-----SPTFCQLRWRPRPASLLSKEQVDK 105 (143)
Q Consensus 67 i~iW~~~g~--------~l-~~~~-----~~~v~~l~wsP~~~~l~s~s~d~~ 105 (143)
+.-|..+.. .| .... .+.-..|.|.|||...++.++...
T Consensus 84 v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 84 VVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred eEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 333444321 11 1111 345678999999988888776544
No 334
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.84 E-value=0.35 Score=40.21 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=48.2
Q ss_pred eEecCCCEEEEEecC---CCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecC-cc---------eecCCcEE
Q psy5876 2 KLRMRGTHIVLAELR---DTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSL-WK---------TKADTGYW 68 (143)
Q Consensus 2 ~~SPdG~~las~~~~---~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~-~~---------~~~D~~i~ 68 (143)
-|+|||..|.--+.- .+..|.-.|..+++...-.+...+...--||||+++|-=+++ +. ...+..++
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 389999987653321 233566677777754332333467888899999998765542 21 12334666
Q ss_pred EEeecCcEE---Ee----cc------CCcEEEEEEeeCCCeeeecCc
Q psy5876 69 QWSFQGKII---KR----FN------SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 69 iW~~~g~~l---~~----~~------~~~v~~l~wsP~~~~l~s~s~ 102 (143)
++++..... .. +. ...=.+.+|+|||+.++=.|+
T Consensus 324 ~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 324 LFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp EEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred EeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 788753322 11 10 112367899999999986554
No 335
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.42 E-value=1.1 Score=30.95 Aligned_cols=86 Identities=8% Similarity=0.084 Sum_probs=54.3
Q ss_pred CEEEEEecCCCCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEeccCCcEE
Q psy5876 8 THIVLAELRDTGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPTFC 86 (143)
Q Consensus 8 ~~las~~~~~dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~~~~v~ 86 (143)
+.|++|+ .|..||+|+-+. .+... +...|+.++-.+.++ |+-+- .+++|-+|+-.-++-+....+.+.
T Consensus 16 ~eLlvGs--~D~~IRvf~~~e--~~~Ei~e~~~v~~L~~~~~~~-F~Y~l------~NGTVGvY~~~~RlWRiKSK~~~~ 84 (111)
T PF14783_consen 16 NELLVGS--DDFEIRVFKGDE--IVAEITETDKVTSLCSLGGGR-FAYAL------ANGTVGVYDRSQRLWRIKSKNQVT 84 (111)
T ss_pred ceEEEec--CCcEEEEEeCCc--EEEEEecccceEEEEEcCCCE-EEEEe------cCCEEEEEeCcceeeeeccCCCeE
Confidence 4788887 699999999774 44443 456788888877755 66666 477888877654444434445555
Q ss_pred EEEEeeCC----CeeeecCchh
Q psy5876 87 QLRWRPRP----ASLLSKEQVD 104 (143)
Q Consensus 87 ~l~wsP~~----~~l~s~s~d~ 104 (143)
++++-.-. +-|++|=.++
T Consensus 85 ~~~~~D~~gdG~~eLI~GwsnG 106 (111)
T PF14783_consen 85 SMAFYDINGDGVPELIVGWSNG 106 (111)
T ss_pred EEEEEcCCCCCceEEEEEecCC
Confidence 55554332 2466654333
No 336
>KOG2079|consensus
Probab=94.38 E-value=0.12 Score=47.66 Aligned_cols=89 Identities=18% Similarity=0.345 Sum_probs=61.5
Q ss_pred CEEEEEecCCCCeEEEEECCC-ceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec--c
Q psy5876 8 THIVLAELRDTGSLEFVDTGD-FSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF--N 81 (143)
Q Consensus 8 ~~las~~~~~dg~i~iWd~~~-~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~--~ 81 (143)
..+|.|+ +-|.+-..|... .......+ ..+|++++|+.||+.++.|- .+|.|.+||.. ++.++.. +
T Consensus 100 ~~ivi~T--s~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~------~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 100 VPIVIGT--SHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGL------GDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeEEEEc--CchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceecccc------CCCcEEEEEccCCcceeeeeec
Confidence 3566665 356676666443 33233332 35899999999999999888 58999999995 6666543 2
Q ss_pred ---CCcEEEEEEeeCCCeeeecCchh
Q psy5876 82 ---SPTFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 82 ---~~~v~~l~wsP~~~~l~s~s~d~ 104 (143)
...|..+.|..++..++++-.-+
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt~D~~G 197 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLTSDTGG 197 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEEccCCC
Confidence 44677778887888888875555
No 337
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.32 E-value=0.87 Score=35.37 Aligned_cols=95 Identities=11% Similarity=0.125 Sum_probs=56.8
Q ss_pred eEecCCCEEEEEecCCCCeEEEEE-CCCc--eEEe--eeccC-ceEEEEECCCCCEEEEeecCcceecCCcEEEEee---
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVD-TGDF--SVMN--AAEHH-QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--- 72 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd-~~~~--~~~~--~~~~~-~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--- 72 (143)
+|+|+|...+... .++..+++. ..++ ..+. ..... .|+.+.+||||..+|.-.... .++.+.+=-+
T Consensus 72 S~d~~g~~W~v~~--~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~---~~~~v~va~V~r~ 146 (253)
T PF10647_consen 72 SWDPDGWVWTVDD--GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDG---GGGRVYVAGVVRD 146 (253)
T ss_pred cccCCCCEEEEEc--CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecC---CCCeEEEEEEEeC
Confidence 6899987777654 355566663 2222 2222 11112 799999999999988777310 2344554333
Q ss_pred -cC--cEEEe---cc---CCcEEEEEEeeCCCeeeecC
Q psy5876 73 -QG--KIIKR---FN---SPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 73 -~g--~~l~~---~~---~~~v~~l~wsP~~~~l~s~s 101 (143)
+| ..+.. .. ...+.+++|.+++..++-+.
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 35 12211 11 35789999999998777544
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.24 E-value=0.16 Score=45.90 Aligned_cols=45 Identities=11% Similarity=0.239 Sum_probs=33.9
Q ss_pred EEEEEecCCCCeEEEEECCCceEEe-eec--cCceEEEEECCCCCEEEEee
Q psy5876 9 HIVLAELRDTGSLEFVDTGDFSVMN-AAE--HHQATDVEWDPTGRYVMSGV 56 (143)
Q Consensus 9 ~las~~~~~dg~i~iWd~~~~~~~~-~~~--~~~v~~i~wsPdG~~lat~s 56 (143)
+||+|+ .+|.||+||.- ++.-. .++ +.+|.+|.-+.||++|++.+
T Consensus 590 ~iavgs--~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 590 YIAVGS--NKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC 637 (794)
T ss_pred eEEEEe--CCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee
Confidence 888888 68999999943 22222 222 36899999999999987766
No 339
>KOG4190|consensus
Probab=94.06 E-value=0.14 Score=44.66 Aligned_cols=63 Identities=13% Similarity=0.205 Sum_probs=46.7
Q ss_pred CCEEEEEecCCCCeEEEEECCC-------ceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcE
Q psy5876 7 GTHIVLAELRDTGSLEFVDTGD-------FSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKI 76 (143)
Q Consensus 7 G~~las~~~~~dg~i~iWd~~~-------~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~ 76 (143)
.+-+++++ .|.+|++|.+.. -.+..++ |..+|.++.|-.|-|+++++ |+++.+||. .|++
T Consensus 747 ENSFiSAS--kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--------D~giHlWDPFigr~ 816 (1034)
T KOG4190|consen 747 ENSFISAS--KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--------DGGIHLWDPFIGRL 816 (1034)
T ss_pred ccceeecc--CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--------cCcceeecccccch
Confidence 34456666 599999999762 2244443 34689999999999999864 678999998 6887
Q ss_pred EEe
Q psy5876 77 IKR 79 (143)
Q Consensus 77 l~~ 79 (143)
+.+
T Consensus 817 Laq 819 (1034)
T KOG4190|consen 817 LAQ 819 (1034)
T ss_pred hHh
Confidence 764
No 340
>KOG1912|consensus
Probab=94.02 E-value=0.17 Score=45.55 Aligned_cols=83 Identities=18% Similarity=0.328 Sum_probs=55.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCC-----------E-EEEeecCcceecCCc
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGR-----------Y-VMSGVSLWKTKADTG 66 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~-----------~-lat~s~~~~~~~D~~ 66 (143)
+.|+|.| .||-|+ -..|.+-|..+.+.+...++ ..|+.+.|+|--- . ||++. ..+.
T Consensus 21 ~Dw~~~G-LiAygs---hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD------~~Gr 90 (1062)
T KOG1912|consen 21 ADWSPSG-LIAYGS---HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD------ISGR 90 (1062)
T ss_pred cccCccc-eEEEec---CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc------ccCc
Confidence 3588888 677665 36788999888888877653 4699999997422 2 22222 5688
Q ss_pred EEEEeec-CcEEEec--cCCcEEEEEEeeC
Q psy5876 67 YWQWSFQ-GKIIKRF--NSPTFCQLRWRPR 93 (143)
Q Consensus 67 i~iW~~~-g~~l~~~--~~~~v~~l~wsP~ 93 (143)
|.+||+- +..+... +.+.+.+++|-|.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~ 120 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPA 120 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeec
Confidence 9999994 5444433 3456666766443
No 341
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.02 E-value=1.3 Score=37.01 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=57.1
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCce-----EEeeec----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS-----VMNAAE----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS 71 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~-----~~~~~~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~ 71 (143)
+.|.++|..++++. .|.+ +|..+.++ ...... ...++++.|.+|+..+++|. .+.+....
T Consensus 286 v~~~~dg~l~l~g~---~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-------~G~v~~s~ 354 (398)
T PLN00033 286 MGWRADGGLWLLTR---GGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG-------SGILLRST 354 (398)
T ss_pred eeEcCCCCEEEEeC---CceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEEC-------CCcEEEeC
Confidence 35778888887764 5665 56655543 222221 13589999999999888776 34443333
Q ss_pred ecCcEEEec---c--CCcEEEEEEeeCCCeeeecCc
Q psy5876 72 FQGKIIKRF---N--SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 72 ~~g~~l~~~---~--~~~v~~l~wsP~~~~l~s~s~ 102 (143)
-.|+.-... . ..+++.+.|.++++-.+++.+
T Consensus 355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 355 DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCC
Confidence 234432221 1 457899999988888887743
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.86 E-value=0.33 Score=38.00 Aligned_cols=64 Identities=13% Similarity=0.304 Sum_probs=45.9
Q ss_pred CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc---CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN---SPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~---~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
..++.++|+||.+.|++... ..+.|...+.+|+.+.+.+ ....-.+++--++..+++.+.++.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d-----~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L 88 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQD-----EPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRL 88 (248)
T ss_dssp S-EEEEEEETTTTEEEEEET-----TTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEE
T ss_pred CCccccEEcCCCCeEEEEEC-----CCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcE
Confidence 46999999999888887774 4567777788899988764 3457788888888888887766644
No 343
>KOG1275|consensus
Probab=93.82 E-value=0.36 Score=44.10 Aligned_cols=66 Identities=11% Similarity=0.230 Sum_probs=49.0
Q ss_pred cCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcce---ecCCcEEEEee
Q psy5876 5 MRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKT---KADTGYWQWSF 72 (143)
Q Consensus 5 PdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~---~~D~~i~iW~~ 72 (143)
.+++++.+|. ..|+|-+-|.++.+.++++..+.-+--+|+-.|..|+||+-..|. -.|.-+++||+
T Consensus 185 ~Nnr~lf~G~--t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 185 YNNRNLFCGD--TRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred ecCcEEEeec--ccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhh
Confidence 4678888887 589999999999999999865544445688899999999864332 24566666654
No 344
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=1.3 Score=36.34 Aligned_cols=95 Identities=13% Similarity=0.192 Sum_probs=65.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK 78 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~ 78 (143)
++.+|+|+.+..... .++.|.+.|+.+.+...... ......++++|+|+++..+.... .++.+.+.|.+ ++.+.
T Consensus 79 i~v~~~~~~vyv~~~-~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~---~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 79 VAVNPAGNKVYVTTG-DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN---GNNTVSVIDAATNKVTA 154 (381)
T ss_pred eeeCCCCCeEEEecC-CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc---CCceEEEEeCCCCeEEE
Confidence 356788886666554 36899999987766655443 23678899999999887776411 25777788875 55555
Q ss_pred ecc--CCcEEEEEEeeCCCeeeec
Q psy5876 79 RFN--SPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 79 ~~~--~~~v~~l~wsP~~~~l~s~ 100 (143)
... ..+ ..+++.|+|+.+...
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~ 177 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVT 177 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEE
Confidence 543 235 889999999955543
No 345
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.52 E-value=1.5 Score=36.55 Aligned_cols=89 Identities=12% Similarity=0.194 Sum_probs=56.1
Q ss_pred EecCCCEEEEEecCCCCeE-EEEECCC--ceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-Cc---
Q psy5876 3 LRMRGTHIVLAELRDTGSL-EFVDTGD--FSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GK--- 75 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i-~iWd~~~--~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~--- 75 (143)
-+|||++++.+. .|.+ +-||-.. .+.+.......++.+.|.+||..++++. ++++ +|+.+ |+
T Consensus 246 ~~~dG~~~~vg~---~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-------~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 246 RSPDGDYVAVSS---RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTR-------GGGL-YVSKGTGLTEE 314 (398)
T ss_pred EcCCCCEEEEEC---CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeC-------CceE-EEecCCCCccc
Confidence 368888888775 4654 2355332 2444444456789999999999888766 4444 55553 43
Q ss_pred --EEEecc----CCcEEEEEEeeCCCeeeecCc
Q psy5876 76 --IIKRFN----SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 76 --~l~~~~----~~~v~~l~wsP~~~~l~s~s~ 102 (143)
.+.... ...+.++.|.++++.++++..
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~ 347 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS 347 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEEECC
Confidence 223222 235899999999887776643
No 346
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.30 E-value=1.2 Score=35.86 Aligned_cols=96 Identities=11% Similarity=0.235 Sum_probs=66.8
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc---CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--Cc
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH---HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GK 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~---~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~ 75 (143)
+.|+|+.+.|.+.. ..+.--+|=..+|.++.+.+. +..-.|+|.-+|+|.++-- .++.+.++.++ +.
T Consensus 91 LTynp~~rtLFav~--n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dE------R~~~l~~~~vd~~t~ 162 (316)
T COG3204 91 LTYNPDTRTLFAVT--NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDE------RDRALYLFTVDADTT 162 (316)
T ss_pred eeeCCCcceEEEec--CCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEeh------hcceEEEEEEcCCcc
Confidence 57999999998876 244444666667888877653 2455789999999888755 57888888774 33
Q ss_pred EEE----ec-----c--CCcEEEEEEeeCCCeeeecCchh
Q psy5876 76 IIK----RF-----N--SPTFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 76 ~l~----~~-----~--~~~v~~l~wsP~~~~l~s~s~d~ 104 (143)
.+. +. . ..++-.++|.|..++|.-+.+..
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~ 202 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN 202 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC
Confidence 322 11 1 23688999999999888765433
No 347
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.28 E-value=0.74 Score=41.70 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=54.9
Q ss_pred CCeEEEEECC--CceEEeeec-----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec-c--CCcEEE
Q psy5876 18 TGSLEFVDTG--DFSVMNAAE-----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF-N--SPTFCQ 87 (143)
Q Consensus 18 dg~i~iWd~~--~~~~~~~~~-----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~-~--~~~v~~ 87 (143)
+..+..||.. ..+++.... ....++++=+.+| +||.|| .++-|++||-.|+.-.+. + ..+|.+
T Consensus 551 ~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs------~~G~IRLyd~~g~~AKT~lp~lG~pI~~ 623 (794)
T PF08553_consen 551 DNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGS------NKGDIRLYDRLGKRAKTALPGLGDPIIG 623 (794)
T ss_pred CCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEe------CCCcEEeecccchhhhhcCCCCCCCeeE
Confidence 5678889965 223443211 2356788888777 688899 699999999777543222 2 579999
Q ss_pred EEEeeCCCeeeecC
Q psy5876 88 LRWRPRPASLLSKE 101 (143)
Q Consensus 88 l~wsP~~~~l~s~s 101 (143)
+.-+.||++||..+
T Consensus 624 iDvt~DGkwilaTc 637 (794)
T PF08553_consen 624 IDVTADGKWILATC 637 (794)
T ss_pred EEecCCCcEEEEee
Confidence 99999999998654
No 348
>KOG1409|consensus
Probab=93.26 E-value=0.15 Score=41.77 Aligned_cols=64 Identities=22% Similarity=0.377 Sum_probs=51.2
Q ss_pred CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE--EEe--ccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI--IKR--FNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~--l~~--~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
..+++++|.|..+.|.+|. .|..+.+||+-|+. .+. .+.+.|..+..-+.-+.|+|.++|+.|.
T Consensus 198 ~~~~~l~Wd~~~~~LfSg~------~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 198 GEVTCLKWDPGQRLLFSGA------SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred cceEEEEEcCCCcEEEecc------ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence 5799999999999999999 59999999996542 222 2456777777777888899999988765
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.19 E-value=3.1 Score=32.55 Aligned_cols=94 Identities=13% Similarity=0.250 Sum_probs=59.7
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec--c-CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--Cc
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--H-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GK 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~ 75 (143)
|+|.|+.+.|++..- ..+.|.-.+.+ ++.+.+.+ . ...-.|++.-+|+|+++.- .++.+.++++. ++
T Consensus 27 LTy~pd~~tLfaV~d-~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~E------r~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 27 LTYNPDTGTLFAVQD-EPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEE------RDQRLYIFTIDDDTT 98 (248)
T ss_dssp EEEETTTTEEEEEET-TTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEET------TTTEEEEEEE----T
T ss_pred cEEcCCCCeEEEEEC-CCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEc------CCCcEEEEEEecccc
Confidence 579998777766653 46777777764 67766643 2 4578899999998887654 46788888882 22
Q ss_pred EE-----Eec----c---CCcEEEEEEeeCCCeeeecCc
Q psy5876 76 II-----KRF----N---SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 76 ~l-----~~~----~---~~~v~~l~wsP~~~~l~s~s~ 102 (143)
.+ .+. . ...+-.++|.|.++.|+.+.+
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE 137 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE 137 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC
Confidence 11 111 1 236899999999988887644
No 350
>KOG2695|consensus
Probab=92.79 E-value=0.36 Score=39.74 Aligned_cols=95 Identities=7% Similarity=-0.005 Sum_probs=60.7
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCC-----ceEEeee-ccCceEEEEECC-CCCEEEEeecCcceecCCcEEEEeec--
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGD-----FSVMNAA-EHHQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSFQ-- 73 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~-----~~~~~~~-~~~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~~-- 73 (143)
|.-.++.+..|. .+|.|-..|+.. +.+...+ |...|+++.--. ++++|++.+ +++.|++||..
T Consensus 260 f~~s~nLv~~Gc--RngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~------M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 260 FAGSDNLVFNGC--RNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASD------MTGKIKLYDLRAT 331 (425)
T ss_pred hcccCCeeEecc--cCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeecc------CcCceeEeeehhh
Confidence 444566777776 589999999764 3344433 445677776555 788888877 79999999984
Q ss_pred --CcEEEe--ccCC--cEEEEEEeeCCCeeeecCchhh
Q psy5876 74 --GKIIKR--FNSP--TFCQLRWRPRPASLLSKEQVDK 105 (143)
Q Consensus 74 --g~~l~~--~~~~--~v~~l~wsP~~~~l~s~s~d~~ 105 (143)
++-+.+ -|.+ .-.-+...|..-.++++++|--
T Consensus 332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy 369 (425)
T KOG2695|consen 332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY 369 (425)
T ss_pred hcccceeeeecccccccccccccccccceEEEccCeeE
Confidence 222433 2322 2223445666667777777754
No 351
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=92.65 E-value=0.76 Score=30.20 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=36.1
Q ss_pred CCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 18 TGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 18 dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
-|.|..||..+.+.+... -...+.|..|||+++|..++. ..+.|.++..+
T Consensus 35 ~~~Vvyyd~~~~~~va~g-~~~aNGI~~s~~~k~lyVa~~-----~~~~I~vy~~~ 84 (86)
T PF01731_consen 35 WGNVVYYDGKEVKVVASG-FSFANGIAISPDKKYLYVASS-----LAHSIHVYKRH 84 (86)
T ss_pred CceEEEEeCCEeEEeecc-CCCCceEEEcCCCCEEEEEec-----cCCeEEEEEec
Confidence 467888887654433322 245789999999999998886 57788888753
No 352
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.61 E-value=1.5 Score=39.46 Aligned_cols=63 Identities=17% Similarity=0.325 Sum_probs=40.2
Q ss_pred CceEEEEECCCCCEEEEeecCcceecCCcEEE------Eeec-----------------CcEEEec-cCCcEEEEEEeeC
Q psy5876 38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQ------WSFQ-----------------GKIIKRF-NSPTFCQLRWRPR 93 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~i------W~~~-----------------g~~l~~~-~~~~v~~l~wsP~ 93 (143)
+.|..|..||+|+++|-.+. .++.| |-.. |..++.. ....|..+.|+|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~-------~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~ 157 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGP-------RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPW 157 (717)
T ss_pred eeEEEEEECCCCCEEEEEcC-------CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCC
Confidence 46889999999999998884 23332 2111 1111111 2347999999999
Q ss_pred C---CeeeecCchhhHH
Q psy5876 94 P---ASLLSKEQVDKIK 107 (143)
Q Consensus 94 ~---~~l~s~s~d~~i~ 107 (143)
+ ..|+-=..|.++|
T Consensus 158 s~~~~~l~vLtsdn~lR 174 (717)
T PF10168_consen 158 SESDSHLVVLTSDNTLR 174 (717)
T ss_pred CCCCCeEEEEecCCEEE
Confidence 5 6676655666665
No 353
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.54 E-value=0.36 Score=39.56 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=39.6
Q ss_pred eEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec-cCCcEEEEEEeeCCCeeeecCch
Q psy5876 40 ATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF-NSPTFCQLRWRPRPASLLSKEQV 103 (143)
Q Consensus 40 v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~-~~~~v~~l~wsP~~~~l~s~s~d 103 (143)
+...++||||+++|-+-+.... ....++++|+. |+.+... .......+.|.++++.++-...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~-e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~ 190 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGS-EWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFD 190 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTS-SEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECS
T ss_pred eeeeeECCCCCEEEEEecCCCC-ceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeC
Confidence 3468999999999877531100 11258899994 6555432 21122239999999988755433
No 354
>KOG1912|consensus
Probab=92.44 E-value=0.61 Score=42.10 Aligned_cols=80 Identities=23% Similarity=0.352 Sum_probs=51.6
Q ss_pred EEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECC---CCCEEEEeecCcceecCCcEEEEee-cCcEEEecc-
Q psy5876 9 HIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDP---TGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN- 81 (143)
Q Consensus 9 ~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsP---dG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~- 81 (143)
.||++. ..|.|-+||...+..+..+.+ .++.+++|=| ++|++..+-+ ..+.+.+|+. +|+++-+..
T Consensus 81 liAsaD--~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh-----~ss~lvLwntdtG~k~Wk~~y 153 (1062)
T KOG1912|consen 81 LIASAD--ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIH-----GSSTLVLWNTDTGEKFWKYDY 153 (1062)
T ss_pred eEEecc--ccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEec-----CCcEEEEEEccCCceeecccc
Confidence 445555 579999999887766665543 4678887764 7776655543 3567888876 477665543
Q ss_pred -CCcEEEEEEeeCCC
Q psy5876 82 -SPTFCQLRWRPRPA 95 (143)
Q Consensus 82 -~~~v~~l~wsP~~~ 95 (143)
...+.++.+-|-..
T Consensus 154 s~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 154 SHEILSCFRVDPFDS 168 (1062)
T ss_pred CCcceeeeeeCCCCc
Confidence 33455566655543
No 355
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.35 E-value=0.36 Score=35.90 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=42.2
Q ss_pred ecCCCEEEEEecCCCCeEEEEECCCceEEeeecc-CceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEe
Q psy5876 4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKR 79 (143)
Q Consensus 4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~ 79 (143)
.+++.++.+++ .++.|..||..+|+.+-+... ..+...- ..++..++.++ .++.++.+|. +|+.+.+
T Consensus 33 ~~~~~~v~~~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~------~~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 33 VPDGGRVYVAS--GDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGT------SDGSLYALDAKTGKVLWS 101 (238)
T ss_dssp EEETTEEEEEE--TTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEE------TTSEEEEEETTTSCEEEE
T ss_pred EEeCCEEEEEc--CCCEEEEEECCCCCEEEEeecccccccee-eeccccccccc------ceeeeEecccCCcceeee
Confidence 34667777776 489999999999988765532 1111111 22334444444 3678888885 6887765
No 356
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.30 E-value=0.73 Score=37.23 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=51.3
Q ss_pred CCCEEEEEecCCCCeEEEEECCCceEEeeec---cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc
Q psy5876 6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN 81 (143)
Q Consensus 6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~---~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~ 81 (143)
++..|..++ .+|.+..+|..+++.+-+.+ .....+... .|.+|++++ .++.+.++|. +|+.+.+..
T Consensus 278 ~~~~vyv~~--~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~------~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 278 DDNRLYVTD--ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD------FEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred eCCEEEEEC--CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe------CCCEEEEEECCCCCEEEEEE
Confidence 455666655 47888888888877664432 111122111 456777776 5788999998 488876654
Q ss_pred --CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 82 --SPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 82 --~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
...+..----.++ .|+-++.|+.|
T Consensus 348 ~~~~~~~~sp~~~~~-~l~v~~~dG~l 373 (377)
T TIGR03300 348 TDGSGIASPPVVVGD-GLLVQTRDGDL 373 (377)
T ss_pred cCCCccccCCEEECC-EEEEEeCCceE
Confidence 2233222122233 46666666554
No 357
>PRK13684 Ycf48-like protein; Provisional
Probab=92.28 E-value=2 Score=34.69 Aligned_cols=89 Identities=9% Similarity=0.156 Sum_probs=52.6
Q ss_pred eEecCCCEEEEEecCCCCeEEE-EECC--CceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEE-eec-CcE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEF-VDTG--DFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW-SFQ-GKI 76 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~i-Wd~~--~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW-~~~-g~~ 76 (143)
.+.|+|.+++++. .|.+.- +|-. +.+.+.......++.+.+.|+|+.++.+. .+.+ +. +.+ |..
T Consensus 179 ~~~~~g~~v~~g~---~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-------~G~~-~~~s~d~G~s 247 (334)
T PRK13684 179 RRSPDGKYVAVSS---RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-------GGQI-RFNDPDDLES 247 (334)
T ss_pred EECCCCeEEEEeC---CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-------CCEE-EEccCCCCCc
Confidence 4678888887775 565532 2211 23444433346789999999999887766 2222 33 233 322
Q ss_pred EEe--cc----CCcEEEEEEeeCCCeeeecC
Q psy5876 77 IKR--FN----SPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 77 l~~--~~----~~~v~~l~wsP~~~~l~s~s 101 (143)
-.. .+ ...+.++.++|++..++.+.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 111 11 23578899999887666553
No 358
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.83 E-value=1.9 Score=34.76 Aligned_cols=83 Identities=13% Similarity=0.249 Sum_probs=47.0
Q ss_pred eEEEEECCCceEEee---ec----cCceEEEEECCCCCEEEEeecC----cce-ecCCcEEEEeecCcEEEeccC--CcE
Q psy5876 20 SLEFVDTGDFSVMNA---AE----HHQATDVEWDPTGRYVMSGVSL----WKT-KADTGYWQWSFQGKIIKRFNS--PTF 85 (143)
Q Consensus 20 ~i~iWd~~~~~~~~~---~~----~~~v~~i~wsPdG~~lat~s~~----~~~-~~D~~i~iW~~~g~~l~~~~~--~~v 85 (143)
.+.+++.+++..+.. .+ ....+++.-.|||++-++-... ... +.-+.++-.+..|+.+..... ..=
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP 165 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence 466777765544222 11 1346799999999988776641 111 112234444444555544332 234
Q ss_pred EEEEEeeCCCeee-ecCc
Q psy5876 86 CQLRWRPRPASLL-SKEQ 102 (143)
Q Consensus 86 ~~l~wsP~~~~l~-s~s~ 102 (143)
+.++||||++.|. +-+.
T Consensus 166 NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 166 NGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CceEECCCCCEEEEEeCC
Confidence 6899999997655 4443
No 359
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.71 E-value=2.5 Score=37.18 Aligned_cols=91 Identities=11% Similarity=0.094 Sum_probs=57.5
Q ss_pred CeEecCCC-----EEEEEecCCCCeEEEEECC-----CceEEee--e---ccCce--EEEEECCCCCEEEEeecCcceec
Q psy5876 1 MKLRMRGT-----HIVLAELRDTGSLEFVDTG-----DFSVMNA--A---EHHQA--TDVEWDPTGRYVMSGVSLWKTKA 63 (143)
Q Consensus 1 i~~SPdG~-----~las~~~~~dg~i~iWd~~-----~~~~~~~--~---~~~~v--~~i~wsPdG~~lat~s~~~~~~~ 63 (143)
++|+|-+. +||+-- ...|.+|.+. +.+.+.. - +..++ ..+.|+|....|+.=.. .
T Consensus 62 lsW~P~~~~~~paLLAVQH---kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~-----~ 133 (671)
T PF15390_consen 62 LSWAPPCTADTPALLAVQH---KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA-----R 133 (671)
T ss_pred eeecCcccCCCCceEEEec---cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec-----C
Confidence 47888753 666654 4689999965 2333221 1 22343 57889999997766552 1
Q ss_pred CCcEEEEee--cCcEEEe--ccCCcEEEEEEeeCCCeeeec
Q psy5876 64 DTGYWQWSF--QGKIIKR--FNSPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 64 D~~i~iW~~--~g~~l~~--~~~~~v~~l~wsP~~~~l~s~ 100 (143)
|-.| +.++ ++..+.- .....|.+.+|.+||++|+-+
T Consensus 134 dvSV-~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVA 173 (671)
T PF15390_consen 134 DVSV-LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVA 173 (671)
T ss_pred ceeE-eeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEE
Confidence 3222 5665 4444432 236689999999999999864
No 360
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.64 E-value=1.6 Score=31.86 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=20.0
Q ss_pred ceEEEEECCCC-----C-EEEEeecCcceecCCcEEEEeecC
Q psy5876 39 QATDVEWDPTG-----R-YVMSGVSLWKTKADTGYWQWSFQG 74 (143)
Q Consensus 39 ~v~~i~wsPdG-----~-~lat~s~~~~~~~D~~i~iW~~~g 74 (143)
.+..++|||-| + .||+-+ .++.+.||...+
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLT------s~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLT------SNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEc------CCCeEEEEecCC
Confidence 57789999954 3 344444 577788887643
No 361
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.48 E-value=0.87 Score=40.85 Aligned_cols=64 Identities=14% Similarity=0.254 Sum_probs=41.8
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECC----------Cce--EEee-e----------ccCceEEEEECCCC---CEEEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTG----------DFS--VMNA-A----------EHHQATDVEWDPTG---RYVMS 54 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~----------~~~--~~~~-~----------~~~~v~~i~wsPdG---~~lat 54 (143)
|..||+|++||..| ..| |.|-.+. .++ .... . ....|..+.|+|.| .+|+.
T Consensus 90 i~~n~~g~~lal~G--~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~v 166 (717)
T PF10168_consen 90 ISLNPTGSLLALVG--PRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVV 166 (717)
T ss_pred EEECCCCCEEEEEc--CCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEE
Confidence 46799999999998 345 3332221 111 1111 1 11368899999984 67776
Q ss_pred eecCcceecCCcEEEEeec
Q psy5876 55 GVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 55 ~s~~~~~~~D~~i~iW~~~ 73 (143)
=. .||.+++||+.
T Consensus 167 Lt------sdn~lR~y~~~ 179 (717)
T PF10168_consen 167 LT------SDNTLRLYDIS 179 (717)
T ss_pred Ee------cCCEEEEEecC
Confidence 66 59999999994
No 362
>PRK10115 protease 2; Provisional
Probab=91.38 E-value=0.89 Score=40.46 Aligned_cols=64 Identities=6% Similarity=0.067 Sum_probs=39.9
Q ss_pred ceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEeccCCcEEEEEEeeCCCeeeecCch
Q psy5876 39 QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRFNSPTFCQLRWRPRPASLLSKEQV 103 (143)
Q Consensus 39 ~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~~~~~v~~l~wsP~~~~l~s~s~d 103 (143)
.+..+.|||||++||-+.+...- ....+++-|+. |..+.......-..++|+||++.++=...+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~-E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSR-RQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCc-EEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEec
Confidence 47788999999999988742110 11246677774 553322211112569999999977755443
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.20 E-value=3.4 Score=34.47 Aligned_cols=64 Identities=11% Similarity=0.238 Sum_probs=46.4
Q ss_pred eEecCCCEEEEEecCCCC------------eEEEEECCCceEEeee--ccCceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876 2 KLRMRGTHIVLAELRDTG------------SLEFVDTGDFSVMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGY 67 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg------------~i~iWd~~~~~~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i 67 (143)
+-+|.|..||... |. .|+||+.. |+++.+. ....+-++.|+.+.+.++... |+.+
T Consensus 35 a~a~~gGpIAi~~---d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~-------dG~v 103 (410)
T PF04841_consen 35 AVAPYGGPIAIIR---DESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQS-------DGTV 103 (410)
T ss_pred EEcCCCceEEEEe---cCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEc-------CCEE
Confidence 4578888888864 22 58888855 3444443 346799999998776665555 8999
Q ss_pred EEEeecCcE
Q psy5876 68 WQWSFQGKI 76 (143)
Q Consensus 68 ~iW~~~g~~ 76 (143)
+++|+.|+.
T Consensus 104 ~vy~~~G~~ 112 (410)
T PF04841_consen 104 RVYDLFGEF 112 (410)
T ss_pred EEEeCCCce
Confidence 999998887
No 364
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.91 E-value=6.4 Score=33.55 Aligned_cols=101 Identities=12% Similarity=0.084 Sum_probs=56.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCce--EEeee-------ccCceEEEEECCCC------CEEEEeecCccee---
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAA-------EHHQATDVEWDPTG------RYVMSGVSLWKTK--- 62 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~-------~~~~v~~i~wsPdG------~~lat~s~~~~~~--- 62 (143)
|+|.|||++|++-- ..|.|++++..++. .+... .......|+++||= ++|....+...-.
T Consensus 35 maflPDG~llVtER--~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~ 112 (454)
T TIGR03606 35 LLWGPDNQLWVTER--ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL 112 (454)
T ss_pred EEEcCCCeEEEEEe--cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc
Confidence 57899998887753 25999999865432 22111 13568999999984 2333332110000
Q ss_pred -cCCcEEEEeecC--------cEEEe-cc---CCcEEEEEEeeCCCeeeecCch
Q psy5876 63 -ADTGYWQWSFQG--------KIIKR-FN---SPTFCQLRWRPRPASLLSKEQV 103 (143)
Q Consensus 63 -~D~~i~iW~~~g--------~~l~~-~~---~~~v~~l~wsP~~~~l~s~s~d 103 (143)
....|.-|.++. +.|.. .. .+.-..|+|.|||...++.++.
T Consensus 113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred cCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 022333344431 12221 21 1234578899999988877765
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.88 E-value=2.7 Score=35.10 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=32.8
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec---cCceEEEEECCCCCEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---HHQATDVEWDPTGRYV 52 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~---~~~v~~i~wsPdG~~l 52 (143)
|+.||+|++||.-. .+|++.+...+-.+.+..+. ......+.|--+.--+
T Consensus 222 iavSpng~~iAl~t--~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 222 IAVSPNGKFIALFT--DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred EEECCCCCEEEEEE--CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence 47899999999987 68999888876444444432 1244566665544333
No 366
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.64 E-value=3.4 Score=33.68 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=53.0
Q ss_pred CeEecCCCEEEEEecC---------CCC-eEEEEEC-C-Cce--EEeee--ccCceEEEEECCCCCEEEEeecCcceecC
Q psy5876 1 MKLRMRGTHIVLAELR---------DTG-SLEFVDT-G-DFS--VMNAA--EHHQATDVEWDPTGRYVMSGVSLWKTKAD 64 (143)
Q Consensus 1 i~~SPdG~~las~~~~---------~dg-~i~iWd~-~-~~~--~~~~~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D 64 (143)
|+|.|+|+.+++-..+ ..+ .|.+.+- + +++ ....+ .......+++.++| .+++.. .
T Consensus 19 ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~-------~ 90 (367)
T TIGR02604 19 VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATP-------P 90 (367)
T ss_pred eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCC-------C
Confidence 5799999988875210 123 6766653 2 232 12222 12356889999999 555433 2
Q ss_pred CcEEEEeecC------c--EEEe-cc------CCcEEEEEEeeCCCeeeecCc
Q psy5876 65 TGYWQWSFQG------K--IIKR-FN------SPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 65 ~~i~iW~~~g------~--~l~~-~~------~~~v~~l~wsP~~~~l~s~s~ 102 (143)
.-.++.+.+| + .+.. +. ......+.|.|||...++.+.
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence 2222334432 1 2222 22 234778999999998887663
No 367
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.45 E-value=5.2 Score=32.24 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=49.3
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEE-CCCceEEee----e--ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVD-TGDFSVMNA----A--EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd-~~~~~~~~~----~--~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
|.|+|||...+++. .|.|++=+ .+..+.-.. . ....+.+++|.|++...|+|+ .+++ +.+.+
T Consensus 192 ~gf~~~~~lw~~~~---Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-------~G~l-~~S~D 260 (302)
T PF14870_consen 192 MGFSPDGNLWMLAR---GGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-------SGTL-LVSTD 260 (302)
T ss_dssp EEE-TTS-EEEEET---TTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-------TT-E-EEESS
T ss_pred ceecCCCCEEEEeC---CcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-------CccE-EEeCC
Confidence 46899988776652 58888777 333332222 1 124589999999999999887 3333 55554
Q ss_pred -CcEEEecc-----CCcEEEEEEeeCCCeeeecC
Q psy5876 74 -GKIIKRFN-----SPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 74 -g~~l~~~~-----~~~v~~l~wsP~~~~l~s~s 101 (143)
|+-=.+.+ ...++.+.|.+..+-++-+.
T Consensus 261 gGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 261 GGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp TTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred CCccceECccccCCCCceEEEEEcCCCceEEECC
Confidence 44333321 45789999987766666554
No 368
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.36 E-value=8.2 Score=31.02 Aligned_cols=95 Identities=11% Similarity=0.141 Sum_probs=56.8
Q ss_pred CeEecCCCEEEEEecCCC------CeEEEEECCCceEEeee-----------------ccCceEEEEECCCCCEEEEeec
Q psy5876 1 MKLRMRGTHIVLAELRDT------GSLEFVDTGDFSVMNAA-----------------EHHQATDVEWDPTGRYVMSGVS 57 (143)
Q Consensus 1 i~~SPdG~~las~~~~~d------g~i~iWd~~~~~~~~~~-----------------~~~~v~~i~wsPdG~~lat~s~ 57 (143)
|++.++|.++++.- .+ ..|.-++.+ ++.+..+ .....-.++++|||+.|.++..
T Consensus 90 i~~~~~g~~~is~E--~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 90 IAVPPDGSFWISSE--GGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred eEEecCCCEEEEeC--CccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 46678898888864 24 567667755 3332211 1235779999999997777764
Q ss_pred Cccee-c-------CCcEEEEeec----CcE----EEecc-------CCcEEEEEEeeCCCeee
Q psy5876 58 LWKTK-A-------DTGYWQWSFQ----GKI----IKRFN-------SPTFCQLRWRPRPASLL 98 (143)
Q Consensus 58 ~~~~~-~-------D~~i~iW~~~----g~~----l~~~~-------~~~v~~l~wsP~~~~l~ 98 (143)
.+... . ...++|+.++ |.. .+... ...+.++.+-|+++.|+
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 32110 1 1126666553 322 22222 35789999999999555
No 369
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.22 E-value=2.2 Score=35.91 Aligned_cols=86 Identities=12% Similarity=0.186 Sum_probs=56.1
Q ss_pred CeEecCCCEEEEEecCCCCeEEE---EECC-------CceEEee--ecc---CceEEEEEC-----------CCCCEEEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEF---VDTG-------DFSVMNA--AEH---HQATDVEWD-----------PTGRYVMS 54 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~i---Wd~~-------~~~~~~~--~~~---~~v~~i~ws-----------PdG~~lat 54 (143)
++.||+|..||.|. .+.-+-+ |+.+ +...... .++ ..|+++.|= ||...|+.
T Consensus 7 isls~~~d~laiA~--~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V 84 (415)
T PF14655_consen 7 ISLSPDGDLLAIAR--GQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV 84 (415)
T ss_pred EEecCCCCEEEEEc--CCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Confidence 46799999999996 2333333 7542 1112111 122 357766554 45677787
Q ss_pred eecCcceecCCcEEEEeecCcEEEe--ccCCcEEEEEEeeCC
Q psy5876 55 GVSLWKTKADTGYWQWSFQGKIIKR--FNSPTFCQLRWRPRP 94 (143)
Q Consensus 55 ~s~~~~~~~D~~i~iW~~~g~~l~~--~~~~~v~~l~wsP~~ 94 (143)
|. .++-+++|+-+|.+|+. +|..+|..+..+...
T Consensus 85 G~------ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~~~ 120 (415)
T PF14655_consen 85 GT------SSGYVRFYTENGVLLLSQLLHEEPVLKIKCRSTK 120 (415)
T ss_pred Ee------cccEEEEEeccchHHHHHhcCccceEEEEecccC
Confidence 77 58899999999998875 467788888886543
No 370
>KOG1645|consensus
Probab=90.15 E-value=0.72 Score=38.62 Aligned_cols=76 Identities=7% Similarity=0.101 Sum_probs=53.3
Q ss_pred EEEEECCCceEEeeec--cCceEEEEECCCCC-EEEEeecCcceecCCcEEEEeecCcEEE-ec-cCCcEEEEEEeeCCC
Q psy5876 21 LEFVDTGDFSVMNAAE--HHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSFQGKIIK-RF-NSPTFCQLRWRPRPA 95 (143)
Q Consensus 21 i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~~g~~l~-~~-~~~~v~~l~wsP~~~ 95 (143)
+++.+..+++...-.+ ..-|.+++|||..+ .+..++ .++.++|.|+..+++. .. ..+.+|+++|--|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~as------l~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLAS------LGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeec------cCceEEEEecccceeeeheeccCCceeeeeccCCc
Confidence 5555555554433222 24589999999999 677777 6999999999766554 33 368999999987776
Q ss_pred eeeecCc
Q psy5876 96 SLLSKEQ 102 (143)
Q Consensus 96 ~l~s~s~ 102 (143)
..+=++.
T Consensus 249 h~IYaGl 255 (463)
T KOG1645|consen 249 HVIYAGL 255 (463)
T ss_pred ceeEEec
Confidence 6655543
No 371
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=89.86 E-value=2.2 Score=34.46 Aligned_cols=88 Identities=9% Similarity=-0.017 Sum_probs=51.0
Q ss_pred CCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEecc--CC
Q psy5876 7 GTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN--SP 83 (143)
Q Consensus 7 G~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~--~~ 83 (143)
+.++.+++ .+|.+..+|..+++.+-..+....... ..++.++..++ .|+.+..+|. +|+.+-+.. ..
T Consensus 241 ~~~vy~~~--~~g~l~a~d~~tG~~~W~~~~~~~~~p--~~~~~~vyv~~------~~G~l~~~d~~tG~~~W~~~~~~~ 310 (377)
T TIGR03300 241 GGQVYAVS--YQGRVAALDLRSGRVLWKRDASSYQGP--AVDDNRLYVTD------ADGVVVALDRRSGSELWKNDELKY 310 (377)
T ss_pred CCEEEEEE--cCCEEEEEECCCCcEEEeeccCCccCc--eEeCCEEEEEC------CCCeEEEEECCCCcEEEccccccC
Confidence 34555655 479999999999887765542222222 23566666666 4788889998 577665431 11
Q ss_pred c-EEEEEEeeCCCeeeecCchhhH
Q psy5876 84 T-FCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 84 ~-v~~l~wsP~~~~l~s~s~d~~i 106 (143)
. +.... ..+..|+.++.++.+
T Consensus 311 ~~~ssp~--i~g~~l~~~~~~G~l 332 (377)
T TIGR03300 311 RQLTAPA--VVGGYLVVGDFEGYL 332 (377)
T ss_pred CccccCE--EECCEEEEEeCCCEE
Confidence 1 11111 134566666666554
No 372
>KOG1409|consensus
Probab=89.50 E-value=0.51 Score=38.79 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=50.5
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC--ceEEe-eeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD--FSVMN-AAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG 74 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~--~~~~~-~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g 74 (143)
++|-|..+.|.+|. .|..+-+||+.- +.... .+++..|..++.-+--+.+.+++ .|+.|.+|+.+-
T Consensus 203 l~Wd~~~~~LfSg~--~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~------edg~i~~w~mn~ 271 (404)
T KOG1409|consen 203 LKWDPGQRLLFSGA--SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG------EDGGIVVWNMNV 271 (404)
T ss_pred EEEcCCCcEEEecc--ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc------CCCeEEEEeccc
Confidence 36889988999987 689999999773 33222 23446788888888888899888 699999998754
No 373
>KOG1832|consensus
Probab=89.42 E-value=0.2 Score=45.93 Aligned_cols=81 Identities=14% Similarity=0.200 Sum_probs=56.7
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceE-EEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEe
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQAT-DVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKR 79 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~-~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~ 79 (143)
.|||+.+.|.- || .+||+...+.++.|....++ .-.|+|.|..++..+ .|||+ +=++++.
T Consensus 1237 ~FsP~D~LIln-----dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----------EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1237 HFSPCDTLILN-----DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----------EIWDMRTFKLLHS 1298 (1516)
T ss_pred ccCCCcceEee-----Cc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----------hhhhhHHHHHHhc
Confidence 68999888863 55 48999877777776544433 446999999999988 47887 3556666
Q ss_pred ccCCcEEEEEEeeCCCeeeec
Q psy5876 80 FNSPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 80 ~~~~~v~~l~wsP~~~~l~s~ 100 (143)
.+.-.-+.+.|+..|..+-..
T Consensus 1299 VP~Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1299 VPSLDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred CccccceEEEeccCccchhhh
Confidence 554455667777777655443
No 374
>KOG3621|consensus
Probab=88.91 E-value=0.71 Score=40.94 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=39.3
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCce-----EEeeec---cCceEEEEECCCCCEEEEeec
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS-----VMNAAE---HHQATDVEWDPTGRYVMSGVS 57 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~-----~~~~~~---~~~v~~i~wsPdG~~lat~s~ 57 (143)
+.|++..++|.|+ +.|.|.++.++... .+...+ ...|++++||+||..+.+|.+
T Consensus 83 ~vs~~e~lvAagt--~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~ 144 (726)
T KOG3621|consen 83 SVSSVEYLVAAGT--ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS 144 (726)
T ss_pred EecchhHhhhhhc--CCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCC
Confidence 4578877778777 67999999877421 122222 236999999999999999984
No 375
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=88.81 E-value=5.5 Score=33.26 Aligned_cols=93 Identities=11% Similarity=0.089 Sum_probs=49.1
Q ss_pred eEecCCCEEEEEecCCCC--eEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC---
Q psy5876 2 KLRMRGTHIVLAELRDTG--SLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG--- 74 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg--~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g--- 74 (143)
+|.+||+.|+-++. .+| .+.+-|+.+++..+--+ ........++|+++.++=.. ....++--|++.
T Consensus 42 ~ft~dG~kllF~s~-~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~------~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASD-FDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK------NGRSLRRVDLDTLEE 114 (386)
T ss_dssp -B-TTS-EEEEEE--TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE------TTTEEEEEETTT--E
T ss_pred CcCCCCCEEEEEec-cCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE------CCCeEEEEECCcCcE
Confidence 58999988877663 344 56677788887654322 23334677899999876443 244565566643
Q ss_pred cEEEeccCCcEEEEEEee--CCCeeeecC
Q psy5876 75 KIIKRFNSPTFCQLRWRP--RPASLLSKE 101 (143)
Q Consensus 75 ~~l~~~~~~~v~~l~wsP--~~~~l~s~s 101 (143)
+.|+..+..-+-...|.+ ++..++-..
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e 143 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIE 143 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEE
Confidence 255666666665577753 355554443
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.67 E-value=5.7 Score=32.23 Aligned_cols=99 Identities=9% Similarity=0.045 Sum_probs=53.8
Q ss_pred CeEecCCCEEEEEecCCCCe-EEEEECCCceEEeeecc----CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876 1 MKLRMRGTHIVLAELRDTGS-LEFVDTGDFSVMNAAEH----HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK 75 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~-i~iWd~~~~~~~~~~~~----~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~ 75 (143)
|.|+|.-..-+.-.. ..|+ ..++|.+..+.+.+... +---.=.|||||++|...-.+.. ..-+-|-|||...+
T Consensus 73 i~~~p~~~ravafAR-rPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd-~~rGViGvYd~r~~ 150 (366)
T COG3490 73 IAFHPALPRAVAFAR-RPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD-PNRGVIGVYDAREG 150 (366)
T ss_pred eecCCCCcceEEEEe-cCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCC-CCCceEEEEecccc
Confidence 345555443333222 3454 45677665543333211 11223469999999876542210 01235669999754
Q ss_pred EEE--eccCC--cEEEEEEeeCCCeeeecC
Q psy5876 76 IIK--RFNSP--TFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 76 ~l~--~~~~~--~v~~l~wsP~~~~l~s~s 101 (143)
..+ ++... .=..+.|.+||..|+-+.
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeC
Confidence 333 34333 345789999999888653
No 377
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.50 E-value=5.5 Score=32.71 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=47.6
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee--cCcEE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--QGKII 77 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g~~l 77 (143)
++|+||+++....+..-..|.+-|+...+.+.+.+...|..+-=++..++..-|+ |+++.-..+ +|+..
T Consensus 101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~-------DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 101 ALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCG-------DGSLLTVTLDADGKEA 171 (342)
T ss_dssp EE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEET-------TSCEEEEEETSTSSEE
T ss_pred EEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEec-------CCceEEEEECCCCCEe
Confidence 6799999999988754468999999999888887767777765444444544444 666665555 35543
No 378
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.37 E-value=2.7 Score=32.27 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=31.8
Q ss_pred CCeEEEEECC--CceEEeeecc-CceEEEEECCCCCEEEEee
Q psy5876 18 TGSLEFVDTG--DFSVMNAAEH-HQATDVEWDPTGRYVMSGV 56 (143)
Q Consensus 18 dg~i~iWd~~--~~~~~~~~~~-~~v~~i~wsPdG~~lat~s 56 (143)
.+.|+.|++. ..+.+.++.. ..|..+.++.-|.||+|=-
T Consensus 37 g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 37 GCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred CCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEE
Confidence 4789999987 3456677754 5799999999999999875
No 379
>KOG4460|consensus
Probab=88.15 E-value=1.9 Score=37.56 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=44.7
Q ss_pred CeEecCCCEEEEEecCCCCeEEE-----EECC----CceE--Ee----------e-eccCceEEEEECCCC---CEEEEe
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEF-----VDTG----DFSV--MN----------A-AEHHQATDVEWDPTG---RYVMSG 55 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~i-----Wd~~----~~~~--~~----------~-~~~~~v~~i~wsPdG---~~lat~ 55 (143)
|..||.|..+|.+| .+|.+.+ |..+ +++. +. + ..+-.+..++|+|++ .+|..=
T Consensus 109 vl~s~~GS~VaL~G--~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL 186 (741)
T KOG4460|consen 109 VLLSPTGSHVALIG--IKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLL 186 (741)
T ss_pred EEecCCCceEEEec--CCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEE
Confidence 35689999999998 5785533 5533 2321 11 1 123357789999987 455555
Q ss_pred ecCcceecCCcEEEEeec-CcEEE
Q psy5876 56 VSLWKTKADTGYWQWSFQ-GKIIK 78 (143)
Q Consensus 56 s~~~~~~~D~~i~iW~~~-g~~l~ 78 (143)
+ .|+.|+|||.. -+.++
T Consensus 187 ~------sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 187 T------SDNVIRIYSLSEPTELY 204 (741)
T ss_pred e------cCcEEEEEecCCcchhh
Confidence 5 49999999984 33443
No 380
>KOG4190|consensus
Probab=88.14 E-value=0.91 Score=39.77 Aligned_cols=122 Identities=9% Similarity=0.007 Sum_probs=70.2
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCceEEeeec----cCceEEEEECCC-CCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE----HHQATDVEWDPT-GRYVMSGVSLWKTKADTGYWQWSFQ-GKI 76 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~----~~~v~~i~wsPd-G~~lat~s~~~~~~~D~~i~iW~~~-g~~ 76 (143)
|=.+-++++++ ||.|++||.--++++...+ +..+..+.--|+ .+.|+.+++. ...+++++|.. +..
T Consensus 792 fL~~lr~i~Sc----D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcs----aeSTVKl~DaRsce~ 863 (1034)
T KOG4190|consen 792 FLADLRSIASC----DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCS----AESTVKLFDARSCEW 863 (1034)
T ss_pred eeeccceeeec----cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeecc----chhhheeeecccccc
Confidence 34456677775 6899999976555554321 233333333344 4555544432 68899999984 443
Q ss_pred EEec-------cCCcEEEEEEeeCCCeeeecCchhhHH----------hhhh----hhchhccHHhHHHHhhccccc
Q psy5876 77 IKRF-------NSPTFCQLRWRPRPASLLSKEQVDKIK----------KSLK----KYTPAFEAKDRQRMNKASKYA 132 (143)
Q Consensus 77 l~~~-------~~~~v~~l~wsP~~~~l~s~s~d~~i~----------~~~~----~~~~~~e~~~~~~~~~~~~~~ 132 (143)
...+ +...+.+++..|.|++|+.+=..+.|. ...+ ....--...|+..+.+|+++.
T Consensus 864 ~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHs 940 (1034)
T KOG4190|consen 864 TCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHS 940 (1034)
T ss_pred eeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccce
Confidence 3222 134688999999999998764333322 1111 112223345666777777664
No 381
>KOG2079|consensus
Probab=87.65 E-value=2.1 Score=39.94 Aligned_cols=54 Identities=7% Similarity=0.105 Sum_probs=40.7
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee--c---cCceEEEEECCCCCEEEEee
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--E---HHQATDVEWDPTGRYVMSGV 56 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~---~~~v~~i~wsPdG~~lat~s 56 (143)
++|+-||++++.|= .+|.|.+||+.+.+.++.+ + +.++-.+-|..++..+.|+.
T Consensus 136 vafn~dg~~l~~G~--~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D 194 (1206)
T KOG2079|consen 136 VAFNQDGSLLLAGL--GDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSD 194 (1206)
T ss_pred eEecCCCceecccc--CCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEcc
Confidence 58999999988774 6899999999987765543 1 23566777888888777765
No 382
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=87.64 E-value=2.9 Score=36.77 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=40.8
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCC-ceEEe-ee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGD-FSVMN-AA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK 75 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~-~~~~~-~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~ 75 (143)
-|.|....|++=.. .|-. .+.++.. ...+. -. ..+-|.+.+|.+||+.|+.+-.. --..+|||-.-+
T Consensus 119 VWHPk~~iL~VLT~-~dvS-V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGS-----sLHSyiWd~~qK 188 (671)
T PF15390_consen 119 VWHPKKAILTVLTA-RDVS-VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGS-----SLHSYIWDSAQK 188 (671)
T ss_pred cccCCCceEEEEec-Ccee-EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCC-----eEEEEEecCchh
Confidence 48899888887553 2333 3666542 12222 22 23569999999999998877631 123457776433
No 383
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.94 E-value=3 Score=22.42 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=21.1
Q ss_pred CCCCEEEEeecCcceecCCcEEEEeec-CcEEEec
Q psy5876 47 PTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF 80 (143)
Q Consensus 47 PdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~ 80 (143)
|||++|.++.. .++.+.++|.. ++.+.+.
T Consensus 1 pd~~~lyv~~~-----~~~~v~~id~~~~~~~~~i 30 (42)
T TIGR02276 1 PDGTKLYVTNS-----GSNTVSVIDTATNKVIATI 30 (42)
T ss_pred CCCCEEEEEeC-----CCCEEEEEECCCCeEEEEE
Confidence 78998877663 57899999984 5555544
No 384
>KOG1916|consensus
Probab=86.59 E-value=1.1 Score=41.33 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.5
Q ss_pred EecCCCEEEEEecCCCCeEEEEECC
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTG 27 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~ 27 (143)
.||||+.+|.+. .||.++||.+.
T Consensus 243 lSpDGtv~a~a~--~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 243 LSPDGTVFAWAI--SDGSVGFYQIY 265 (1283)
T ss_pred eCCCCcEEEEee--cCCccceeeee
Confidence 699999999998 69999999955
No 385
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=86.38 E-value=3.5 Score=33.84 Aligned_cols=57 Identities=9% Similarity=0.123 Sum_probs=40.9
Q ss_pred eEEEEECCCceEEeeecc-CceEEEEECCCCC-EEEEeecCcceecCCcEEEEee-cCcEEEecc
Q psy5876 20 SLEFVDTGDFSVMNAAEH-HQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSF-QGKIIKRFN 81 (143)
Q Consensus 20 ~i~iWd~~~~~~~~~~~~-~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~ 81 (143)
.|-++|+.+++.+.+.+. .++.+|+-|.|.+ +|.+.+. .++.+.+||. +|+++++..
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~-----~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA-----GDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET-----TTTEEEEEETTT--EEEEE-
T ss_pred EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC-----CCCeEEEEeCcCCcEEeehh
Confidence 455567889999988763 4677999999998 5555442 4788999999 699888653
No 386
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=86.02 E-value=3.5 Score=36.55 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=41.3
Q ss_pred EecCCCEEEEEecCCCCeEEEEECC---------CceEEee-----eccCceEEEEECCCCCEEEEeecCcceecCCcEE
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTG---------DFSVMNA-----AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYW 68 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~---------~~~~~~~-----~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~ 68 (143)
..|||+.+++.|| .+.|.++.-. +...+.+ +..++|.+..|-+||..++.++ |.+.
T Consensus 82 st~d~qsiLaVGf--~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--------Nqlf 151 (631)
T PF12234_consen 82 STPDGQSILAVGF--PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--------NQLF 151 (631)
T ss_pred ecCCCCEEEEEEc--CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--------CEEE
Confidence 3699999999996 6888887632 2222322 2236899999999997766544 4666
Q ss_pred EEee
Q psy5876 69 QWSF 72 (143)
Q Consensus 69 iW~~ 72 (143)
|++-
T Consensus 152 v~dk 155 (631)
T PF12234_consen 152 VFDK 155 (631)
T ss_pred EECC
Confidence 7654
No 387
>KOG0309|consensus
Probab=85.84 E-value=0.82 Score=41.19 Aligned_cols=97 Identities=9% Similarity=0.202 Sum_probs=62.6
Q ss_pred EecCCC-EEEEEecCCCCeEEEEECCCce-EEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-C-cE
Q psy5876 3 LRMRGT-HIVLAELRDTGSLEFVDTGDFS-VMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-G-KI 76 (143)
Q Consensus 3 ~SPdG~-~las~~~~~dg~i~iWd~~~~~-~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g-~~ 76 (143)
|.|+-. .||+++ .|..++.||+.+.. .+.... +...+.+.|+--.-.+...+ ..+-+.+||.. | ..
T Consensus 122 ~~~q~pdVlatcs--vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass------hg~~i~vwd~r~gs~p 193 (1081)
T KOG0309|consen 122 FNPQHPDVLATCS--VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS------HGNDIFVWDLRKGSTP 193 (1081)
T ss_pred cCCCCCcceeecc--ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc------cCCceEEEeccCCCcc
Confidence 444433 677787 68999999988754 333332 35678899996444444444 37789999994 4 44
Q ss_pred EEec--cCCcEEEEEEeeC-CCeeeecCchhhHH
Q psy5876 77 IKRF--NSPTFCQLRWRPR-PASLLSKEQVDKIK 107 (143)
Q Consensus 77 l~~~--~~~~v~~l~wsP~-~~~l~s~s~d~~i~ 107 (143)
+... +...|+.+.|..- -..+.+.+.|++++
T Consensus 194 l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 194 LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred eEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 4433 4556777777433 34566777777776
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.84 E-value=2 Score=34.63 Aligned_cols=64 Identities=8% Similarity=0.143 Sum_probs=44.2
Q ss_pred cCceEEEEECCCCCEEEEeecCcceecCCcEEEE-eecCcEEEeccC---CcEEEEEEeeCCCeeeecCchhhH
Q psy5876 37 HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW-SFQGKIIKRFNS---PTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 37 ~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW-~~~g~~l~~~~~---~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
+..++++.|+||.+.|.+... ...-.+| +.+|+++...+- ...-.+.|--+|+..++.+.+..+
T Consensus 85 ~~nvS~LTynp~~rtLFav~n------~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l 152 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTN------KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRAL 152 (316)
T ss_pred cccccceeeCCCcceEEEecC------CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceE
Confidence 346999999999999988873 2223243 557998887652 233467777777777777666654
No 389
>KOG4649|consensus
Probab=85.84 E-value=6.3 Score=31.64 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=49.1
Q ss_pred CCEEEEEecCCCCeEEEEECCCceEEeeecc-Cce-EEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec
Q psy5876 7 GTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQA-TDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF 80 (143)
Q Consensus 7 G~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v-~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~ 80 (143)
|++++.|.. .|.+.|-+.++|.++..+.. ..| ....-.|||..|-+++ .|+.++.-|.. -.++++.
T Consensus 63 gdfVV~GCy--~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgs------hd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 63 GDFVVLGCY--SGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGS------HDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred CCEEEEEEc--cCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEec------CCCcEEEecccccceEEec
Confidence 678888884 78999999999977665532 233 3456789999999999 58888888885 3356654
No 390
>KOG2395|consensus
Probab=85.54 E-value=2.2 Score=37.12 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=34.4
Q ss_pred EEEEEecCCCCeEEEEECCCceEEe-eec--cCceEEEEECCCCCEEEEee
Q psy5876 9 HIVLAELRDTGSLEFVDTGDFSVMN-AAE--HHQATDVEWDPTGRYVMSGV 56 (143)
Q Consensus 9 ~las~~~~~dg~i~iWd~~~~~~~~-~~~--~~~v~~i~wsPdG~~lat~s 56 (143)
+||+|+ .+|.||+||. .+.... .++ +.+|..|.-+.||++|++.+
T Consensus 443 ~IvvgS--~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 443 YIVVGS--LKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred eEEEee--cCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 889998 5899999996 333222 233 35799999999999988766
No 391
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=85.38 E-value=3.1 Score=30.76 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=38.1
Q ss_pred CCeEEEEECCCceEEeeeccC-ceEEEE--ECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEec
Q psy5876 18 TGSLEFVDTGDFSVMNAAEHH-QATDVE--WDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRF 80 (143)
Q Consensus 18 dg~i~iWd~~~~~~~~~~~~~-~v~~i~--wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~ 80 (143)
+|+|..||..+++.+-+.... ...... -.+++.++.+++ .++.+..||. +|+.+-+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~l~~~d~~tG~~~W~~ 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS------GDGNLYALDAKTGKVLWRF 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE------TTSEEEEEETTTSEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc------CCCEEEEEECCCCCEEEEe
Confidence 689999999999887665321 122222 344666777776 4788899997 78876543
No 392
>KOG3630|consensus
Probab=85.17 E-value=2.4 Score=39.88 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=53.8
Q ss_pred CCCeEEEEECCCce-EEeeec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc------CCcEEEE
Q psy5876 17 DTGSLEFVDTGDFS-VMNAAE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN------SPTFCQL 88 (143)
Q Consensus 17 ~dg~i~iWd~~~~~-~~~~~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~------~~~v~~l 88 (143)
.|+.|++..+.-.. ...++. ....++++|||-|+.++.|- ..+++.-|...+......+ ..+|.++
T Consensus 176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~------nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v 249 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGR------NNGTEVQYEPSLEIKSEIPEPPVEENYRVLSV 249 (1405)
T ss_pred cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEec------CCCeEEEeecccceeecccCCCcCCCcceeEE
Confidence 36666666554322 222333 24679999999999999998 5778888888776544432 3478999
Q ss_pred EEeeCCCeeeec
Q psy5876 89 RWRPRPASLLSK 100 (143)
Q Consensus 89 ~wsP~~~~l~s~ 100 (143)
.|--.-..|+..
T Consensus 250 ~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 250 TWLSTQEFLVVY 261 (1405)
T ss_pred EEecceeEEEEe
Confidence 998777777754
No 393
>KOG1832|consensus
Probab=83.73 E-value=0.81 Score=42.13 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=50.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEee--eccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA--AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~--~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
++||-+-++|++|++ .|.|+++++.+|.-... .|...++.+.=|-||..+++.+... ..-..+|+..
T Consensus 1107 ~afs~~~~hL~vG~~--~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S----~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSH--AGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS----SPLSALWDAS 1175 (1516)
T ss_pred EEeecCCceEEeeec--cceEEEEEccCccccccccccccccccccccCCcceeeeecccc----CchHHHhccc
Confidence 478999999999995 79999999998754432 2345799999999999988887521 1133467763
No 394
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=83.71 E-value=20 Score=28.77 Aligned_cols=63 Identities=17% Similarity=0.325 Sum_probs=40.2
Q ss_pred EEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec----------------c-CCcEEEEEEeeCCCeeeecCch
Q psy5876 41 TDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF----------------N-SPTFCQLRWRPRPASLLSKEQV 103 (143)
Q Consensus 41 ~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~----------------~-~~~v~~l~wsP~~~~l~s~s~d 103 (143)
-+|++.++|.++++.-....-.....|.-++.+|+.+... + ...+-+++++|+|+.|++.-+.
T Consensus 88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred hHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 3788888998888765210000116676777777764432 0 2357899999999977765443
No 395
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=83.45 E-value=11 Score=33.07 Aligned_cols=103 Identities=12% Similarity=0.136 Sum_probs=56.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC-ceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCc-------EEEE-e
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD-FSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTG-------YWQW-S 71 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~-~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~-------i~iW-~ 71 (143)
+.|||||+.++..+.......++|-+.. + ........+....|+|+|+.++.-........|+. +.+| +
T Consensus 65 ~~~spdg~~~~~~~~~~~~~~~l~l~~~~g--~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (620)
T COG1506 65 LRWSPDGSVLAFVSTDGGRVAQLYLVDVGG--LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFD 142 (620)
T ss_pred cccCCCCCEEEEEeccCCCcceEEEEecCC--ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeec
Confidence 3689999999987621111234444332 3 22223467899999999999988321111111222 2233 2
Q ss_pred ecC-c-----------EEEec--cCCcEEEEEEeeCCCeeeecCchhh
Q psy5876 72 FQG-K-----------IIKRF--NSPTFCQLRWRPRPASLLSKEQVDK 105 (143)
Q Consensus 72 ~~g-~-----------~l~~~--~~~~v~~l~wsP~~~~l~s~s~d~~ 105 (143)
..| . ..... ....+...++.+++..++....+..
T Consensus 143 ~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (620)
T COG1506 143 GRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDD 190 (620)
T ss_pred CCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccc
Confidence 233 1 11111 1346777777777787777665544
No 396
>PRK13684 Ycf48-like protein; Provisional
Probab=83.29 E-value=22 Score=28.65 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=53.3
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCce---EEeee---ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-C
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS---VMNAA---EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-G 74 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~---~~~~~---~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g 74 (143)
.+.|+|+.++++. .|.+.+=..+.++ .+... ....+.++.+.|+++.++++. ++.+ +...+ |
T Consensus 221 ~~~~~g~~~~vg~---~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-------~G~v-~~S~d~G 289 (334)
T PRK13684 221 GFQPDGNLWMLAR---GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG-------NGTL-LVSKDGG 289 (334)
T ss_pred eEcCCCCEEEEec---CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcC-------CCeE-EEeCCCC
Confidence 5678888877765 5776543344332 22211 123578899999999777665 3434 45554 3
Q ss_pred cEEEec----c-CCcEEEEEEeeCCCeeeecC
Q psy5876 75 KIIKRF----N-SPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 75 ~~l~~~----~-~~~v~~l~wsP~~~~l~s~s 101 (143)
+.-... . ...++.+.|..++..++.+.
T Consensus 290 ~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 290 KTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 322211 1 34688899987777776654
No 397
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=83.20 E-value=11 Score=34.78 Aligned_cols=80 Identities=10% Similarity=0.188 Sum_probs=46.5
Q ss_pred CeEEEEECCCce--EEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec--CcEEEecc--CCcEEEEEEee
Q psy5876 19 GSLEFVDTGDFS--VMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ--GKIIKRFN--SPTFCQLRWRP 92 (143)
Q Consensus 19 g~i~iWd~~~~~--~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~--g~~l~~~~--~~~v~~l~wsP 92 (143)
|.|.+-|.+... .+......++.+-+|||||++||=+.+..+......|++-++. |.-+.++. ...|..-...+
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e 408 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLE 408 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecC
Confidence 567777766432 2212224578899999999999985543221113357777773 44444443 34455555566
Q ss_pred CCCeee
Q psy5876 93 RPASLL 98 (143)
Q Consensus 93 ~~~~l~ 98 (143)
+|...+
T Consensus 409 ~gdt~i 414 (912)
T TIGR02171 409 NGDTVI 414 (912)
T ss_pred CCCeEE
Confidence 665544
No 398
>KOG2100|consensus
Probab=83.16 E-value=6.6 Score=35.53 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=35.7
Q ss_pred EecCCCEEEEEecC-------CCCeEEEEECCCceEEe--eeccCceEEEEECCCCCEEEEeec
Q psy5876 3 LRMRGTHIVLAELR-------DTGSLEFVDTGDFSVMN--AAEHHQATDVEWDPTGRYVMSGVS 57 (143)
Q Consensus 3 ~SPdG~~las~~~~-------~dg~i~iWd~~~~~~~~--~~~~~~v~~i~wsPdG~~lat~s~ 57 (143)
.|||.++++.+... .-+...++++.++.... ..+...+..+.|||.|..++-.-.
T Consensus 104 ~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~~ 167 (755)
T KOG2100|consen 104 ISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVLH 167 (755)
T ss_pred cChhhhhheeccCcccccceeeEEEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEEe
Confidence 57888888776421 12456677777765222 122345689999999988887763
No 399
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=83.12 E-value=2.6 Score=24.09 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=20.2
Q ss_pred CeEecCCC---EEEEEecCCCCeEEEEECCC
Q psy5876 1 MKLRMRGT---HIVLAELRDTGSLEFVDTGD 28 (143)
Q Consensus 1 i~~SPdG~---~las~~~~~dg~i~iWd~~~ 28 (143)
+.|||+.. +|+-+. ..|.|.|+|+.+
T Consensus 6 ~kFsP~~~~~DLL~~~E--~~g~vhi~D~R~ 34 (43)
T PF10313_consen 6 CKFSPEPGGNDLLAWAE--HQGRVHIVDTRS 34 (43)
T ss_pred EEeCCCCCcccEEEEEc--cCCeEEEEEccc
Confidence 47998544 787776 579999999884
No 400
>KOG2114|consensus
Probab=83.05 E-value=6.3 Score=36.04 Aligned_cols=100 Identities=8% Similarity=0.128 Sum_probs=62.8
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeecc--CceEEEEECCCCC-EEEEeecCcceecCC-cEEEEeec---C
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEH--HQATDVEWDPTGR-YVMSGVSLWKTKADT-GYWQWSFQ---G 74 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~--~~v~~i~wsPdG~-~lat~s~~~~~~~D~-~i~iW~~~---g 74 (143)
+|+|.|..+|.|+ .+|.|.+.+-. .+.+..+.. ..+...-|.-+++ +|++.+.+.. ... .++||+++ +
T Consensus 30 c~~s~~~~vvigt--~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~--~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGT--ADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQ--GNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEee--ccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCC--CCceEEEEecccccCC
Confidence 5899999999998 58988777733 233343321 2344455777774 5666653110 011 58899983 2
Q ss_pred -c---EEE--e-c----c--CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 75 -K---IIK--R-F----N--SPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 75 -~---~l~--~-~----~--~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
+ +++ . . + ..++..++.+-+-+.+|.|-.++.|
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V 149 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLV 149 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEE
Confidence 2 331 1 1 1 3468899999999999998777765
No 401
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=82.86 E-value=7 Score=34.32 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=39.5
Q ss_pred cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee--cCcEEEeccCCcEEEEEEeeCCCeeee
Q psy5876 37 HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--QGKIIKRFNSPTFCQLRWRPRPASLLS 99 (143)
Q Consensus 37 ~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g~~l~~~~~~~v~~l~wsP~~~~l~s 99 (143)
...+..+.|+|||+.++..+.. .+....+|-+ .| ........+....|+|+|+.++.
T Consensus 59 ~~~~~~~~~spdg~~~~~~~~~----~~~~~~l~l~~~~g--~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 59 GGGVSELRWSPDGSVLAFVSTD----GGRVAQLYLVDVGG--LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred CCcccccccCCCCCEEEEEecc----CCCcceEEEEecCC--ceeeeecccccceeCCCCCeEEE
Confidence 3568899999999999988821 1222334433 43 33334567888999999999888
No 402
>KOG2377|consensus
Probab=82.61 E-value=5.6 Score=34.31 Aligned_cols=88 Identities=9% Similarity=0.172 Sum_probs=61.0
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECC--CceEEeee----ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTG--DFSVMNAA----EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG 74 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~--~~~~~~~~----~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g 74 (143)
|.||||.+.||+-- .+.+|.|.+.. ..++.... ....|....|+.+ +-+|--+ +.++-+|.+..
T Consensus 72 IkFSlDnkilAVQR--~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~-------~~G~e~y~v~p 141 (657)
T KOG2377|consen 72 IKFSLDNKILAVQR--TSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT-------DQGIEFYQVLP 141 (657)
T ss_pred EEeccCcceEEEEe--cCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe-------cCCeEEEEEch
Confidence 57999999999975 58999999962 11222221 1235889999966 6677766 67888998853
Q ss_pred --cEEEe--ccCCcEEEEEEeeCCCeee
Q psy5876 75 --KIIKR--FNSPTFCQLRWRPRPASLL 98 (143)
Q Consensus 75 --~~l~~--~~~~~v~~l~wsP~~~~l~ 98 (143)
+.++. .+..+|+-.+|.|+-..++
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEe
Confidence 33332 3466888899999987544
No 403
>KOG0882|consensus
Probab=81.89 E-value=5.7 Score=34.00 Aligned_cols=92 Identities=14% Similarity=0.205 Sum_probs=65.3
Q ss_pred EEEEEecCCCCeEEEEECCC-c-eE--EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc-------EE
Q psy5876 9 HIVLAELRDTGSLEFVDTGD-F-SV--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK-------II 77 (143)
Q Consensus 9 ~las~~~~~dg~i~iWd~~~-~-~~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~-------~l 77 (143)
.||++.+ .+|.+.|+|-.. + +. ...+|..+|..+.++|-|.-+++.- ..+-|.-|+..|. +.
T Consensus 113 ~IAVs~~-~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD------~~gmVEyWs~e~~~qfPr~~l~ 185 (558)
T KOG0882|consen 113 LIAVSLF-KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID------ISGMVEYWSAEGPFQFPRTNLN 185 (558)
T ss_pred eEEeecc-cCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc------ccceeEeecCCCcccCcccccc
Confidence 5666666 589999999542 2 22 2234557899999999999887766 4567888988761 11
Q ss_pred Eec-----------cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRF-----------NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~-----------~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
... ......++.|+|+|..+.+-++|..||
T Consensus 186 ~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR 226 (558)
T KOG0882|consen 186 FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVR 226 (558)
T ss_pred ccccccchhhcccccccCccceEEccccCcccccCcccEEE
Confidence 111 133567899999999999988888777
No 404
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.54 E-value=7.5 Score=29.67 Aligned_cols=52 Identities=13% Similarity=0.330 Sum_probs=38.3
Q ss_pred ECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec----------------cCCcEEEEEEeeCCCeeeecCc
Q psy5876 45 WDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF----------------NSPTFCQLRWRPRPASLLSKEQ 102 (143)
Q Consensus 45 wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~----------------~~~~v~~l~wsP~~~~l~s~s~ 102 (143)
...+|.|+++-+ .++.+++||+. ++.+... ....|..+..+.+|..|++-+.
T Consensus 18 l~~~~~~Ll~iT------~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn 86 (219)
T PF07569_consen 18 LECNGSYLLAIT------SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN 86 (219)
T ss_pred EEeCCCEEEEEe------CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence 556889988888 58999999995 5544332 1246888899999988887543
No 405
>KOG4499|consensus
Probab=81.39 E-value=15 Score=29.12 Aligned_cols=84 Identities=11% Similarity=0.086 Sum_probs=48.4
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEE--CCCce-----EEee------eccCceEEEEECCCCCEEEEeecCcceecCCcE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVD--TGDFS-----VMNA------AEHHQATDVEWDPTGRYVMSGVSLWKTKADTGY 67 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd--~~~~~-----~~~~------~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i 67 (143)
++|+.|-+.+---.. .+-+|.-|| ..+|. .+.. +++...-.++..-+|...+++- ..++|
T Consensus 163 l~Wd~d~K~fY~iDs-ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~------ng~~V 235 (310)
T KOG4499|consen 163 LAWDSDAKKFYYIDS-LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF------NGGTV 235 (310)
T ss_pred ccccccCcEEEEEcc-CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe------cCcEE
Confidence 456666664433221 244565587 33432 2221 1222223444566777555544 36678
Q ss_pred EEEee-cCcEEEec--cCCcEEEEEEe
Q psy5876 68 WQWSF-QGKIIKRF--NSPTFCQLRWR 91 (143)
Q Consensus 68 ~iW~~-~g~~l~~~--~~~~v~~l~ws 91 (143)
.-.|. +|++|.+. +...+.+++|-
T Consensus 236 ~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred EEECCCCCcEEEEEEcCCCceEEEEec
Confidence 88888 69988754 58899999995
No 406
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.24 E-value=3 Score=35.68 Aligned_cols=27 Identities=7% Similarity=0.026 Sum_probs=22.3
Q ss_pred CCCEEEEEecCCCCeEEEEECCCceEEee
Q psy5876 6 RGTHIVLAELRDTGSLEFVDTGDFSVMNA 34 (143)
Q Consensus 6 dG~~las~~~~~dg~i~iWd~~~~~~~~~ 34 (143)
+..+|++-+ .|+++|+||+.+++++.+
T Consensus 229 ~~~~l~tl~--~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 229 DDTFLFTLS--RDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp TTTEEEEEE--TTSEEEEEETTTTCEEEE
T ss_pred CCCEEEEEe--CCCeEEEEECCCCeEEEE
Confidence 567887877 699999999999888554
No 407
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=81.05 E-value=14 Score=29.29 Aligned_cols=89 Identities=9% Similarity=0.106 Sum_probs=54.1
Q ss_pred CCEEEEEecCCCCeEEEEECCCce-EEee--ec-cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee--cCcEEEec
Q psy5876 7 GTHIVLAELRDTGSLEFVDTGDFS-VMNA--AE-HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--QGKIIKRF 80 (143)
Q Consensus 7 G~~las~~~~~dg~i~iWd~~~~~-~~~~--~~-~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g~~l~~~ 80 (143)
+.+|+++. .+.|.+|+.+..+ .... .+ ...++++... +.+|+.|. .-+++.++.+ +++.+...
T Consensus 98 ~~~lv~~~---g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD------~~~sv~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 98 NGRLVVAV---GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGD------AMKSVSLLRYDEENNKLILV 166 (321)
T ss_dssp TTEEEEEE---TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEE------SSSSEEEEEEETTTE-EEEE
T ss_pred CCEEEEee---cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEE------cccCEEEEEEEccCCEEEEE
Confidence 44566654 5899999977655 4332 22 2346666555 55888887 5677887755 45534322
Q ss_pred ----cCCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 81 ----NSPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 81 ----~~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
....+.++.+-+++..++.+..++.+
T Consensus 167 a~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 167 ARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp EEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred EecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 24468889998787767766556544
No 408
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.67 E-value=12 Score=31.95 Aligned_cols=34 Identities=15% Similarity=0.360 Sum_probs=25.1
Q ss_pred eEEEEECC----CCCEEEEeecCcceecCCcEEEEeec-CcEEEe
Q psy5876 40 ATDVEWDP----TGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKR 79 (143)
Q Consensus 40 v~~i~wsP----dG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~ 79 (143)
...++.++ +..++++-+ .|+.+|+||+. +++++.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~------~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLS------RDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp EEEEEE-----ETTTEEEEEE------TTSEEEEEETTTTCEEEE
T ss_pred cceEEEecceeCCCCEEEEEe------CCCeEEEEECCCCeEEEE
Confidence 56677777 778898888 69999999995 666443
No 409
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=78.32 E-value=18 Score=27.63 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=42.1
Q ss_pred ecCCCEEEEEecCCCCeEEEEEC-CCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee
Q psy5876 4 RMRGTHIVLAELRDTGSLEFVDT-GDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF 72 (143)
Q Consensus 4 SPdG~~las~~~~~dg~i~iWd~-~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~ 72 (143)
...|+.|+.|. .+| +.+++. +..+.....+...|..+.--|+-+.|++=+ |+.+.++++
T Consensus 4 ~~~~~~L~vGt--~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-------d~~l~~~~L 63 (275)
T PF00780_consen 4 DSWGDRLLVGT--EDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-------DGQLYVYDL 63 (275)
T ss_pred ccCCCEEEEEE--CCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-------CCccEEEEc
Confidence 35688999997 577 889998 333333333344699999999888877776 677777776
No 410
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=78.25 E-value=4.6 Score=35.93 Aligned_cols=55 Identities=9% Similarity=0.127 Sum_probs=38.5
Q ss_pred eEecCCCEEEEEecC---CCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEee
Q psy5876 2 KLRMRGTHIVLAELR---DTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGV 56 (143)
Q Consensus 2 ~~SPdG~~las~~~~---~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s 56 (143)
+.|||++++|-+--. ..=+++|-|+.+++.+-..-.....+++|.+||+.|.=..
T Consensus 135 ~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~ 192 (682)
T COG1770 135 SISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTR 192 (682)
T ss_pred eeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEE
Confidence 569999999987311 1127899999988765433234467899999999765544
No 411
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=77.60 E-value=29 Score=26.43 Aligned_cols=85 Identities=8% Similarity=0.097 Sum_probs=49.9
Q ss_pred cCCCEEEEEecCCCCeEEEEECCCceEEe---------------eec-cCceEEEE---ECCCCCEEEEeecCcceecCC
Q psy5876 5 MRGTHIVLAELRDTGSLEFVDTGDFSVMN---------------AAE-HHQATDVE---WDPTGRYVMSGVSLWKTKADT 65 (143)
Q Consensus 5 PdG~~las~~~~~dg~i~iWd~~~~~~~~---------------~~~-~~~v~~i~---wsPdG~~lat~s~~~~~~~D~ 65 (143)
|+-+.|++-+ |+.+.+++++...... ..+ ..++...+ -...+++|+.+. .+
T Consensus 45 ~~~~~llvLs---d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-------kk 114 (275)
T PF00780_consen 45 PELNLLLVLS---DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-------KK 114 (275)
T ss_pred cccCEEEEEc---CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-------CC
Confidence 4445555543 6999999988544322 111 23455444 334455666555 66
Q ss_pred cEEEEeecC------cEEEecc-CCcEEEEEEeeCCCeeeecC
Q psy5876 66 GYWQWSFQG------KIIKRFN-SPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 66 ~i~iW~~~g------~~l~~~~-~~~v~~l~wsP~~~~l~s~s 101 (143)
.+.||...+ +.+.+.. ...+.+++|. +..++-+.
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred EEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence 888888753 2344443 6788999999 44555443
No 412
>KOG0882|consensus
Probab=76.82 E-value=3.5 Score=35.20 Aligned_cols=69 Identities=19% Similarity=0.350 Sum_probs=48.4
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCC-ce-----EEee---------ec--cCceEEEEECCCCCEEEEeecCcceecC
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGD-FS-----VMNA---------AE--HHQATDVEWDPTGRYVMSGVSLWKTKAD 64 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~-~~-----~~~~---------~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D 64 (143)
.++|-|.-+++.. ..|-|+-|..+. ++ .... +. ....+++.|||+|..+++-+ .|
T Consensus 151 ~y~qa~Ds~vSiD--~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~------~D 222 (558)
T KOG0882|consen 151 RYNQAGDSAVSID--ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN------PD 222 (558)
T ss_pred Eeeccccceeecc--ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC------cc
Confidence 4577788787776 469999999772 11 1111 11 12468999999999999988 58
Q ss_pred CcEEEEeec-CcEEE
Q psy5876 65 TGYWQWSFQ-GKIIK 78 (143)
Q Consensus 65 ~~i~iW~~~-g~~l~ 78 (143)
..|+++.+. |++++
T Consensus 223 rkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 223 RKVRGFVFKTGKLVQ 237 (558)
T ss_pred cEEEEEEeccchhhh
Confidence 899999885 55444
No 413
>KOG0309|consensus
Probab=75.80 E-value=5.5 Score=36.16 Aligned_cols=63 Identities=13% Similarity=0.205 Sum_probs=38.8
Q ss_pred eEecCCC---EEEEEecCCCCeEEEEECCC-----ceEEeeeccCceEEEEECCCCC-EEEEeecCcceecCCcEEEEee
Q psy5876 2 KLRMRGT---HIVLAELRDTGSLEFVDTGD-----FSVMNAAEHHQATDVEWDPTGR-YVMSGVSLWKTKADTGYWQWSF 72 (143)
Q Consensus 2 ~~SPdG~---~las~~~~~dg~i~iWd~~~-----~~~~~~~~~~~v~~i~wsPdG~-~lat~s~~~~~~~D~~i~iW~~ 72 (143)
.|||.-. ++++-+ ...--+|++.. .+.+.-.|...++++.|.|+-. .+|+++ .|..+..||.
T Consensus 74 qws~h~a~~~wiVsts---~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcs------vdt~vh~wd~ 144 (1081)
T KOG0309|consen 74 QWSPHPAKPYWIVSTS---NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCS------VDTYVHAWDM 144 (1081)
T ss_pred ecccCCCCceeEEecC---cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecc------ccccceeeec
Confidence 5776643 455544 34455899652 1222222345799999999887 567777 5666666666
Q ss_pred c
Q psy5876 73 Q 73 (143)
Q Consensus 73 ~ 73 (143)
.
T Consensus 145 r 145 (1081)
T KOG0309|consen 145 R 145 (1081)
T ss_pred c
Confidence 4
No 414
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=74.75 E-value=21 Score=23.45 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=27.4
Q ss_pred CCeEEEEECCCceEEeee-ccCceEEEEECCCCCEEEEeec
Q psy5876 18 TGSLEFVDTGDFSVMNAA-EHHQATDVEWDPTGRYVMSGVS 57 (143)
Q Consensus 18 dg~i~iWd~~~~~~~~~~-~~~~v~~i~wsPdG~~lat~s~ 57 (143)
+|.+--||..+++...-. .-...+.|+.|||+.+++.+-.
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 577777888876642222 2356789999999999988864
No 415
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=74.45 E-value=14 Score=29.70 Aligned_cols=57 Identities=11% Similarity=0.270 Sum_probs=37.6
Q ss_pred ceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE---EEecc------CCcEEEEEEeeC----CCeeeecCc
Q psy5876 39 QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI---IKRFN------SPTFCQLRWRPR----PASLLSKEQ 102 (143)
Q Consensus 39 ~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~---l~~~~------~~~v~~l~wsP~----~~~l~s~s~ 102 (143)
....++|.|||+.|++-- .+.|++.+.+|.. +.... ...+..++++|+ +...+..+.
T Consensus 3 ~P~~~a~~pdG~l~v~e~-------~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAER-------SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp SEEEEEEETTSCEEEEET-------TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred CceEEEEeCCCcEEEEeC-------CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEc
Confidence 357899999999888643 6788888865654 22221 347899999995 555555543
No 416
>PRK13615 lipoprotein LpqB; Provisional
Probab=74.34 E-value=39 Score=29.69 Aligned_cols=89 Identities=16% Similarity=0.121 Sum_probs=55.0
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEee--cCcEEEe
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF--QGKIIKR 79 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g~~l~~ 79 (143)
+.|+||+.+|... .++.+.++....... .......++.-+|+++| .+=+.-. ++...+... +|.....
T Consensus 340 avS~dg~~~A~v~--~~~~l~vg~~~~~~~-~~~~~~~Lt~PS~d~~g-~vWtv~~------g~~~~l~~~~~~G~~~~v 409 (557)
T PRK13615 340 TLSADGRQAAVRN--ASGVWSVGDGDRDAV-LLDTRPGLVAPSLDAQG-YVWSTPA------SDPRGLVAWGPDGVGHPV 409 (557)
T ss_pred eEcCCCceEEEEc--CCceEEEecCCCcce-eeccCCccccCcCcCCC-CEEEEeC------CCceEEEEecCCCceEEe
Confidence 5689999988876 467777776662211 11233457788899998 4444432 223444433 3543221
Q ss_pred ---cc-CCcEEEEEEeeCCCeeeec
Q psy5876 80 ---FN-SPTFCQLRWRPRPASLLSK 100 (143)
Q Consensus 80 ---~~-~~~v~~l~wsP~~~~l~s~ 100 (143)
+. ...|..+..|+||-+++--
T Consensus 410 ~v~~~~~~~I~~lrvSrDG~R~Avi 434 (557)
T PRK13615 410 AVSWTATGRVVSLEVARDGARVLVQ 434 (557)
T ss_pred eccccCCCeeEEEEeCCCccEEEEE
Confidence 12 3579999999999887753
No 417
>KOG1008|consensus
Probab=74.30 E-value=0.84 Score=40.37 Aligned_cols=89 Identities=13% Similarity=0.234 Sum_probs=54.5
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECC-CceEEeeeccCceEEEEECC-CCCEEEEeecCcceecCCcEEEEee--c-CcE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTG-DFSVMNAAEHHQATDVEWDP-TGRYVMSGVSLWKTKADTGYWQWSF--Q-GKI 76 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~-~~~~~~~~~~~~v~~i~wsP-dG~~lat~s~~~~~~~D~~i~iW~~--~-g~~ 76 (143)
+|--|-+.+.+|. ....+.+.|+. +......+....+..+.-+| .+.|+++.+ |+-+.+||. + ...
T Consensus 161 cwlrd~klvlaGm--~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-------dg~iAiwD~~rnienp 231 (783)
T KOG1008|consen 161 CWLRDTKLVLAGM--TSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-------DGDIAIWDTYRNIENP 231 (783)
T ss_pred ccccCcchhhccc--ccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-------cCceeeccchhhhccH
Confidence 3443444444443 35677888865 22222233334567778888 888998877 888999993 2 223
Q ss_pred EEe-cc-----CCcEEEEEEeeCCCeeee
Q psy5876 77 IKR-FN-----SPTFCQLRWRPRPASLLS 99 (143)
Q Consensus 77 l~~-~~-----~~~v~~l~wsP~~~~l~s 99 (143)
+.. .+ ...+..++|.|.-+-++.
T Consensus 232 l~~i~~~~N~~~~~l~~~aycPtrtglla 260 (783)
T KOG1008|consen 232 LQIILRNENKKPKQLFALAYCPTRTGLLA 260 (783)
T ss_pred HHHHhhCCCCcccceeeEEeccCCcchhh
Confidence 322 12 235999999998765554
No 418
>KOG2395|consensus
Probab=73.81 E-value=25 Score=30.87 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=52.9
Q ss_pred CCCeEEEEECC-Cce-EEe--eec----cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec-c--CCcE
Q psy5876 17 DTGSLEFVDTG-DFS-VMN--AAE----HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF-N--SPTF 85 (143)
Q Consensus 17 ~dg~i~iWd~~-~~~-~~~--~~~----~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~-~--~~~v 85 (143)
.|..|.-||.. .++ .+. ..+ ....++.+=.-+| |||.|| .++-|++||-.|+.-.+. + ...|
T Consensus 402 s~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS------~~GdIRLYdri~~~AKTAlPgLG~~I 474 (644)
T KOG2395|consen 402 SDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGS------LKGDIRLYDRIGRRAKTALPGLGDAI 474 (644)
T ss_pred cCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEee------cCCcEEeehhhhhhhhhcccccCCce
Confidence 36778888855 222 111 111 1235556555555 899999 799999999877655543 2 5689
Q ss_pred EEEEEeeCCCeeeecC
Q psy5876 86 CQLRWRPRPASLLSKE 101 (143)
Q Consensus 86 ~~l~wsP~~~~l~s~s 101 (143)
.++.-+.+|++|+..+
T Consensus 475 ~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 475 KHVDVTADGKWILATC 490 (644)
T ss_pred eeEEeeccCcEEEEec
Confidence 9999999999988654
No 419
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=72.86 E-value=23 Score=29.84 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=24.5
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEee
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNA 34 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~ 34 (143)
|+.+|+|++.|+.. .=|.|.++|+.++..+.-
T Consensus 313 i~~sP~~~laA~tD--slGRV~LiD~~~~~vvrm 344 (415)
T PF14655_consen 313 ICLSPSGRLAAVTD--SLGRVLLIDVARGIVVRM 344 (415)
T ss_pred EEECCCCCEEEEEc--CCCcEEEEECCCChhhhh
Confidence 46799998888864 358999999998765543
No 420
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=71.17 E-value=66 Score=27.58 Aligned_cols=96 Identities=18% Similarity=0.275 Sum_probs=46.2
Q ss_pred cCCCEEEEEecCCCCeEEEEECCC----ceEEeeecc---------CceEEEEECCCCCEEEEeecCcceecCCcEEEEe
Q psy5876 5 MRGTHIVLAELRDTGSLEFVDTGD----FSVMNAAEH---------HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWS 71 (143)
Q Consensus 5 PdG~~las~~~~~dg~i~iWd~~~----~~~~~~~~~---------~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~ 71 (143)
.+.++|++.+. ..+.|.|.|+.+ .++.+..+. ...-.+-=-|+|+.++|+=.+..-..-+++.+.|
T Consensus 85 ~~Rr~Li~PgL-~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 85 KERRYLILPGL-RSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp --S-EEEEEBT-TT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-
T ss_pred ccCCcEEeeee-ccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEc
Confidence 35789999988 478999999873 334333331 1123444558999998885432212345677776
Q ss_pred ecC-cEEEecc-----CCcEEEEEEeeCCCeeeecC
Q psy5876 72 FQG-KIIKRFN-----SPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 72 ~~g-~~l~~~~-----~~~v~~l~wsP~~~~l~s~s 101 (143)
-++ ..+..+. ...-+++.|+|.-..++|.+
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSe 199 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSE 199 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEETTTTEEEE-B
T ss_pred CccccccceeccCCCCCCCCCCeEEcCCCCEEEEec
Confidence 653 3344443 22468999999999999974
No 421
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=70.97 E-value=1.6 Score=21.60 Aligned_cols=8 Identities=13% Similarity=0.156 Sum_probs=6.6
Q ss_pred eEecCCCE
Q psy5876 2 KLRMRGTH 9 (143)
Q Consensus 2 ~~SPdG~~ 9 (143)
.|||+|+.
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 48999985
No 422
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=70.35 E-value=14 Score=31.98 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=16.1
Q ss_pred CceEEEEECCCCCEEEEee
Q psy5876 38 HQATDVEWDPTGRYVMSGV 56 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s 56 (143)
..++.++|+|||++|...-
T Consensus 502 aE~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 502 AEITGPCFSPDGRTLFVNI 520 (524)
T ss_pred cccccceECCCCCEEEEEE
Confidence 5799999999999887654
No 423
>KOG1008|consensus
Probab=70.21 E-value=0.76 Score=40.63 Aligned_cols=94 Identities=14% Similarity=0.240 Sum_probs=59.3
Q ss_pred eEecC-CCEEEEEecC---CCCeEEEEECCCce--E-----EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEE
Q psy5876 2 KLRMR-GTHIVLAELR---DTGSLEFVDTGDFS--V-----MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQW 70 (143)
Q Consensus 2 ~~SPd-G~~las~~~~---~dg~i~iWd~~~~~--~-----~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW 70 (143)
+|+|- -+.||+| +. .|..+.|||..++- + +.........+++|-.|-+.+.+|. ....+.++
T Consensus 109 AwneLDtn~LAag-ldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm------~sr~~~if 181 (783)
T KOG1008|consen 109 AWNELDTNHLAAG-LDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGM------TSRSVHIF 181 (783)
T ss_pred ccccccHHHHHhh-hhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccc------ccchhhhh
Confidence 55554 3345544 43 46789999988651 1 1111123567999999999999988 36678899
Q ss_pred eecCcEEE--eccCCcEEEEEEee-CCCeeeecCc
Q psy5876 71 SFQGKIIK--RFNSPTFCQLRWRP-RPASLLSKEQ 102 (143)
Q Consensus 71 ~~~g~~l~--~~~~~~v~~l~wsP-~~~~l~s~s~ 102 (143)
|+.-.+.. .....-+..+...| .+.++.+..+
T Consensus 182 dlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~d 216 (783)
T KOG1008|consen 182 DLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSD 216 (783)
T ss_pred hhhhhhhhhhhhhhhhcccceecCCCCCceecccc
Confidence 88533322 22344566777788 6667777664
No 424
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=68.84 E-value=25 Score=30.04 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=32.6
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCC---ceEEeee---------cc---------CceEEEEECCCCCEEEEeec
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGD---FSVMNAA---------EH---------HQATDVEWDPTGRYVMSGVS 57 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~---~~~~~~~---------~~---------~~v~~i~wsPdG~~lat~s~ 57 (143)
|..|.|.++|-.+++ ..|.|+.||+.. .+++-+. ++ ....=+..|.||+.|...++
T Consensus 317 I~iSlDDrfLYvs~W-~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 317 ILISLDDRFLYVSNW-LHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp EEE-TTS-EEEEEET-TTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EEEccCCCEEEEEcc-cCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 457999999999999 699999999874 2332221 00 12356788999998766554
No 425
>KOG2114|consensus
Probab=67.30 E-value=1e+02 Score=28.64 Aligned_cols=91 Identities=12% Similarity=0.122 Sum_probs=55.5
Q ss_pred EecCCCEEEEEecCCCCeEEEEECC----CceEEe-ee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcE
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTG----DFSVMN-AA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKI 76 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~----~~~~~~-~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~ 76 (143)
.|.+=+.+|.| + .+|.|..+.-+ .+.... .. ...+|+.+++.-||+-++-+. .-+.|.+|.++|+-
T Consensus 133 Vs~~l~~Iv~G-f-~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~------Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 133 VSEDLKTIVCG-F-TNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA------TTEQVMLYSLSGRT 204 (933)
T ss_pred EEccccEEEEE-e-cCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE------ecceeEEEEecCCC
Confidence 44554555554 6 58999888744 222221 22 236899999999999732222 14578899998875
Q ss_pred --EEec--cCCcEEEEEEeeCCCeeeecC
Q psy5876 77 --IKRF--NSPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 77 --l~~~--~~~~v~~l~wsP~~~~l~s~s 101 (143)
+... +.-.+++-+++|.-..++.++
T Consensus 205 p~~~~ld~~G~~lnCss~~~~t~qfIca~ 233 (933)
T KOG2114|consen 205 PSLKVLDNNGISLNCSSFSDGTYQFICAG 233 (933)
T ss_pred cceeeeccCCccceeeecCCCCccEEEec
Confidence 2212 244677777877666455543
No 426
>KOG1916|consensus
Probab=64.71 E-value=2.7 Score=38.83 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=21.4
Q ss_pred EECCCCCEEEEeecCcceecCCcEEEEee--cCc
Q psy5876 44 EWDPTGRYVMSGVSLWKTKADTGYWQWSF--QGK 75 (143)
Q Consensus 44 ~wsPdG~~lat~s~~~~~~~D~~i~iW~~--~g~ 75 (143)
..||||+.||+++ .|+.++.|.+ .|+
T Consensus 242 ~lSpDGtv~a~a~------~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 242 SLSPDGTVFAWAI------SDGSVGFYQIYITGK 269 (1283)
T ss_pred eeCCCCcEEEEee------cCCccceeeeeeecc
Confidence 4899999999999 5888888876 365
No 427
>KOG2444|consensus
Probab=64.13 E-value=16 Score=28.50 Aligned_cols=50 Identities=10% Similarity=0.213 Sum_probs=30.2
Q ss_pred CCCeEEEEECCCceEEeee-cc--CceEEEEECCCCCEEEEe--ecCcceecCCcEEEEee
Q psy5876 17 DTGSLEFVDTGDFSVMNAA-EH--HQATDVEWDPTGRYVMSG--VSLWKTKADTGYWQWSF 72 (143)
Q Consensus 17 ~dg~i~iWd~~~~~~~~~~-~~--~~v~~i~wsPdG~~lat~--s~~~~~~~D~~i~iW~~ 72 (143)
.||.||.|++.-.+.+-.. +| .+.....-+-.+++|+.+ | .|..++.|++
T Consensus 122 ~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S------~d~~~k~W~v 176 (238)
T KOG2444|consen 122 QDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTS------HDRVLKKWNV 176 (238)
T ss_pred cCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccc------cchhhhhcch
Confidence 5899999998866554432 22 234444455555666655 4 4566666666
No 428
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=63.20 E-value=23 Score=31.18 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=32.9
Q ss_pred CEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEee
Q psy5876 8 THIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGV 56 (143)
Q Consensus 8 ~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s 56 (143)
-|||+|+ .-|.|++||.-........+ +..|..|.-+.+|+++++.+
T Consensus 574 GyIa~as--~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 574 GYIAAAS--RKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred ceEEEec--CCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee
Confidence 4899998 57999999943211111122 35788999999999887666
No 429
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=63.11 E-value=20 Score=30.18 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=15.8
Q ss_pred EeeeccCceEEEEECCC-CCEEEEe
Q psy5876 32 MNAAEHHQATDVEWDPT-GRYVMSG 55 (143)
Q Consensus 32 ~~~~~~~~v~~i~wsPd-G~~lat~ 55 (143)
+....|-+...++|+|- |++.++-
T Consensus 233 i~s~G~RN~qGl~w~P~tg~Lw~~e 257 (399)
T COG2133 233 IWSYGHRNPQGLAWHPVTGALWTTE 257 (399)
T ss_pred eEEeccCCccceeecCCCCcEEEEe
Confidence 33444567789999998 6655443
No 430
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=62.95 E-value=30 Score=20.65 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.7
Q ss_pred ceEEEEECCCCCEEEEeec
Q psy5876 39 QATDVEWDPTGRYVMSGVS 57 (143)
Q Consensus 39 ~v~~i~wsPdG~~lat~s~ 57 (143)
.+.+++.-||||.|+.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 3577889999999999973
No 431
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=62.49 E-value=44 Score=22.29 Aligned_cols=29 Identities=7% Similarity=0.038 Sum_probs=15.6
Q ss_pred EEEECCCceEEeeeccCceEEEEECCCCCEEEEe
Q psy5876 22 EFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSG 55 (143)
Q Consensus 22 ~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~ 55 (143)
-+|..++.... ... ..+.+.+||.+++..
T Consensus 42 ~vW~snt~~~~----~~~-~~l~l~~dGnLvl~~ 70 (114)
T smart00108 42 VVWVANRDNPV----SDS-CTLTLQSDGNLVLYD 70 (114)
T ss_pred EEEECCCCCCC----CCC-EEEEEeCCCCEEEEe
Confidence 47887653211 111 456667777766543
No 432
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=61.16 E-value=31 Score=29.46 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=35.2
Q ss_pred CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc---EEEec-------cCCcEEEEEEeeCC
Q psy5876 38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK---IIKRF-------NSPTFCQLRWRPRP 94 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~---~l~~~-------~~~~v~~l~wsP~~ 94 (143)
.....++|.|||+.|++-- ..+.|++++..+. .+... ....+..|+++|+=
T Consensus 30 ~~Pw~maflPDG~llVtER------~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTER------ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEe------cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4578999999999988865 2467877765432 22111 23578999999984
No 433
>KOG4659|consensus
Probab=61.02 E-value=14 Score=35.70 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=51.2
Q ss_pred eEEEEECCCCCEEEEeecCcc------eecCCcEEEEe-------e--cCcE-EEe--------ccCCcEEEEEEeeCCC
Q psy5876 40 ATDVEWDPTGRYVMSGVSLWK------TKADTGYWQWS-------F--QGKI-IKR--------FNSPTFCQLRWRPRPA 95 (143)
Q Consensus 40 v~~i~wsPdG~~lat~s~~~~------~~~D~~i~iW~-------~--~g~~-l~~--------~~~~~v~~l~wsP~~~ 95 (143)
-.+|+++|+|-..++=++..+ ...|+.|.+.- + .+.| .+. .+-+..++++.+|||.
T Consensus 595 ~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~ 674 (1899)
T KOG4659|consen 595 QRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD 674 (1899)
T ss_pred hhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc
Confidence 468999999998888886543 23566676641 1 1111 011 1234678999999999
Q ss_pred eeeecCchhhHH---hhhhhhc--hhccHHh
Q psy5876 96 SLLSKEQVDKIK---KSLKKYT--PAFEAKD 121 (143)
Q Consensus 96 ~l~s~s~d~~i~---~~~~~~~--~~~e~~~ 121 (143)
.++.....-.|| ++...|. ..||+-+
T Consensus 675 v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~~ 705 (1899)
T KOG4659|consen 675 VIIADSGNSRIRKVSARMAKYDGSRTYEITD 705 (1899)
T ss_pred EEEecCCchhhhhhhhcccccCCCceeeccC
Confidence 999876655555 4444443 5566543
No 434
>KOG2247|consensus
Probab=60.38 E-value=2.5 Score=36.57 Aligned_cols=98 Identities=9% Similarity=0.075 Sum_probs=62.1
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCce--EEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFS--VMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIK 78 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~--~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~ 78 (143)
+|.-+|..++.... ..+.+++||+++.. .+.........-+.|+|.+..++.+- ..+.+.|++-. .+.+.
T Consensus 81 ~wDkegdvlavlAe-k~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~------~~gn~viynhgtsR~ii 153 (615)
T KOG2247|consen 81 AWDKEGDVLAVLAE-KTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGN------NAGNIVIYNHGTSRRII 153 (615)
T ss_pred hhccccchhhhhhh-cCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccc------cccceEEEeccchhhhh
Confidence 45556666655433 46889999988531 11111112334478999999999886 57778888763 44332
Q ss_pred e-c-cCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 79 R-F-NSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 79 ~-~-~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
. - +..++..++|.|.+..++. +.|..+-
T Consensus 154 v~Gkh~RRgtq~av~lEd~vil~-dcd~~L~ 183 (615)
T KOG2247|consen 154 VMGKHQRRGTQIAVTLEDYVILC-DCDNTLS 183 (615)
T ss_pred hhcccccceeEEEecccceeeec-CcHHHHH
Confidence 2 2 4668999999999875554 4454443
No 435
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=60.15 E-value=21 Score=17.87 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=11.9
Q ss_pred eEEEEECCCCCEEEEee
Q psy5876 40 ATDVEWDPTGRYVMSGV 56 (143)
Q Consensus 40 v~~i~wsPdG~~lat~s 56 (143)
..+++.+++|+.+++=+
T Consensus 4 P~gvav~~~g~i~VaD~ 20 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADS 20 (28)
T ss_dssp EEEEEEETTSEEEEEEC
T ss_pred CcEEEEeCCCCEEEEEC
Confidence 46777788887766655
No 436
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=60.03 E-value=93 Score=25.29 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=21.1
Q ss_pred cCCcEEEEee-cCcEEEecc--CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 63 ADTGYWQWSF-QGKIIKRFN--SPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 63 ~D~~i~iW~~-~g~~l~~~~--~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
.|+.+.+.|. +|+.+.+.. ...+.+--.- .+..|+-+++++.+
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l~v~t~~G~l 388 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDKLLIQARDGTV 388 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCEEEEEeCCceE
Confidence 3666777777 577665443 2223221111 23355555666544
No 437
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=59.44 E-value=27 Score=23.14 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=33.8
Q ss_pred CCCEEEEeecCcceecCCcEE-EEeecCcEEEecc-CCcEEEEEEe--eC-CCeeeecCchhhHH
Q psy5876 48 TGRYVMSGVSLWKTKADTGYW-QWSFQGKIIKRFN-SPTFCQLRWR--PR-PASLLSKEQVDKIK 107 (143)
Q Consensus 48 dG~~lat~s~~~~~~~D~~i~-iW~~~g~~l~~~~-~~~v~~l~ws--P~-~~~l~s~s~d~~i~ 107 (143)
-|.+|++|.. -+.|+ +||..|+.+.+.. ..+|.=.-|+ |. |..++....++.++
T Consensus 29 ~Gd~iv~G~~------~gkVr~l~d~~g~~v~~a~Ps~~V~I~G~~~~P~aGd~~~~~~se~~Ak 87 (95)
T cd03702 29 VGDVLVAGTT------YGKVRAMFDENGKRVKEAGPSTPVEILGLKGVPQAGDKFLVVESEKEAK 87 (95)
T ss_pred CCCEEEEccc------ccEEEEEECCCCCCCCEECCCCcEEEcCCCCCCCCCCEEEEeCCHHHHH
Confidence 4678888883 55666 7999998887765 3444434555 54 55566555554444
No 438
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=59.03 E-value=44 Score=30.28 Aligned_cols=90 Identities=10% Similarity=0.115 Sum_probs=54.3
Q ss_pred CEEEEEecCCCCeEEEEECCC-------c----e---------EEeee-ccCceEEEEEC--CCCCEEEEeecCcceecC
Q psy5876 8 THIVLAELRDTGSLEFVDTGD-------F----S---------VMNAA-EHHQATDVEWD--PTGRYVMSGVSLWKTKAD 64 (143)
Q Consensus 8 ~~las~~~~~dg~i~iWd~~~-------~----~---------~~~~~-~~~~v~~i~ws--PdG~~lat~s~~~~~~~D 64 (143)
..|++|. +||.|.+|.+++ . + +...+ -...+.+++++ ...++||.++ ..
T Consensus 115 EVLl~c~--DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSs------Ns 186 (717)
T PF08728_consen 115 EVLLLCT--DDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSS------NS 186 (717)
T ss_pred eEEEEEe--cCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEec------CC
Confidence 4566666 799999998652 1 0 00111 12467889998 8888888887 45
Q ss_pred CcEEEEeec---CcEEEe---ccCCcEEEEEEeeCC---C---eeeecCchhh
Q psy5876 65 TGYWQWSFQ---GKIIKR---FNSPTFCQLRWRPRP---A---SLLSKEQVDK 105 (143)
Q Consensus 65 ~~i~iW~~~---g~~l~~---~~~~~v~~l~wsP~~---~---~l~s~s~d~~ 105 (143)
.+|.||-+. .+.-+. .+.+.|.+++|-++. . .+++++-.++
T Consensus 187 ~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~ 239 (717)
T PF08728_consen 187 QEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGE 239 (717)
T ss_pred ceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCc
Confidence 677776552 221111 135678888887664 1 5555554443
No 439
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=58.69 E-value=1e+02 Score=25.34 Aligned_cols=98 Identities=14% Similarity=0.227 Sum_probs=58.8
Q ss_pred CCCEEEEEecCCCCeEEEEECCCc--eEEeeeccCceEEEEECCCCCEEEEeecCcce--------------ecCCcEEE
Q psy5876 6 RGTHIVLAELRDTGSLEFVDTGDF--SVMNAAEHHQATDVEWDPTGRYVMSGVSLWKT--------------KADTGYWQ 69 (143)
Q Consensus 6 dG~~las~~~~~dg~i~iWd~~~~--~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~--------------~~D~~i~i 69 (143)
||+.-++-+ ..|.+.-+|.++| +.+...+ .....++|. |++++.+-+-.|. ...-++.+
T Consensus 212 dgrLwvlds--gtGev~~vD~~~G~~e~Va~vp-G~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~v 286 (335)
T TIGR03032 212 QGKLWLLNS--GRGELGYVDPQAGKFQPVAFLP-GFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAV 286 (335)
T ss_pred CCeEEEEEC--CCCEEEEEcCCCCcEEEEEECC-CCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEE
Confidence 344444433 2566666776554 3444443 457889999 9998877653331 11236777
Q ss_pred Eee-cCcEEEecc----CCcEEEEEEeeCC-CeeeecCchhhHHh
Q psy5876 70 WSF-QGKIIKRFN----SPTFCQLRWRPRP-ASLLSKEQVDKIKK 108 (143)
Q Consensus 70 W~~-~g~~l~~~~----~~~v~~l~wsP~~-~~l~s~s~d~~i~~ 108 (143)
-|+ +|..++... ...+++++.-|.= .-.+-+-++.+|+.
T Consensus 287 idl~tG~vv~~l~feg~v~EifdV~vLPg~r~P~~lg~~~~~i~~ 331 (335)
T TIGR03032 287 IDLNSGDVVHWLRFEGVIEEIYDVAVLPGVRRPEALGPDDDEIRR 331 (335)
T ss_pred EECCCCCEEEEEEeCCceeEEEEEEEecCCCCccccCCCcHHHhh
Confidence 788 588776543 5689999999983 22333444445554
No 440
>KOG1275|consensus
Probab=58.47 E-value=78 Score=29.73 Aligned_cols=103 Identities=10% Similarity=0.137 Sum_probs=67.9
Q ss_pred CCCEEEEEecCCCCeEEEEECCCceEEeeec--cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEec--
Q psy5876 6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAE--HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRF-- 80 (143)
Q Consensus 6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~--~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~-- 80 (143)
++..++-||+ ...+--.|.++.+.....+ ..+|+-+. -++|++.+|. ..++|.+-|.+ -+.++++
T Consensus 146 ~~~~~i~Gg~--Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~------t~G~V~LrD~~s~~~iht~~a 215 (1118)
T KOG1275|consen 146 GPSTLIMGGL--QEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGD------TRGTVFLRDPNSFETIHTFDA 215 (1118)
T ss_pred CCcceeecch--hhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeec------ccceEEeecCCcCceeeeeec
Confidence 3456677774 5566678888876655443 23455444 3689999988 47889999986 4566665
Q ss_pred cCCcEEEEEEeeCCCeeeecCchhhH-HhhhhhhchhccHH
Q psy5876 81 NSPTFCQLRWRPRPASLLSKEQVDKI-KKSLKKYTPAFEAK 120 (143)
Q Consensus 81 ~~~~v~~l~wsP~~~~l~s~s~d~~i-~~~~~~~~~~~e~~ 120 (143)
|.+.|.++ .-+|+.|+|++...-- -.+...|.+.|+..
T Consensus 216 Hs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 216 HSGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred cccceeee--eccCCeEEEeecccccccccccchhhhhhhh
Confidence 46677755 5568899998754322 24555677777763
No 441
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=58.47 E-value=16 Score=29.30 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=28.2
Q ss_pred eEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc
Q psy5876 40 ATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN 81 (143)
Q Consensus 40 v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~ 81 (143)
|.-=+=+|+-..+++.. ...++++||+.|++|+...
T Consensus 58 IwVh~t~P~kS~vItt~------Kk~Gl~VYDLsGkqLqs~~ 93 (364)
T COG4247 58 IWVHATNPDKSLVITTV------KKAGLRVYDLSGKQLQSVN 93 (364)
T ss_pred eEeccCCcCcceEEEee------ccCCeEEEecCCCeeeecC
Confidence 45445678888888777 5789999999999988764
No 442
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=58.13 E-value=5.8 Score=36.36 Aligned_cols=87 Identities=11% Similarity=0.234 Sum_probs=51.7
Q ss_pred CeEecCCCEEEEEecC---CCCeEEEEECCC---ceE-EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 1 MKLRMRGTHIVLAELR---DTGSLEFVDTGD---FSV-MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 1 i~~SPdG~~las~~~~---~dg~i~iWd~~~---~~~-~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
++|-|+|..+|+-+.+ ....|.|+..+. |+. +..........++|+-...-+|.+- .|.+++|...
T Consensus 252 LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-------~n~~~lwttk 324 (1243)
T COG5290 252 LSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-------GNLLKLWTTK 324 (1243)
T ss_pred cccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-------cceEEEEEcc
Confidence 5799999999997632 123677877553 222 1111223466778887776665544 6678888764
Q ss_pred CcE--EE-eccCCcEEEEEEeeCC
Q psy5876 74 GKI--IK-RFNSPTFCQLRWRPRP 94 (143)
Q Consensus 74 g~~--l~-~~~~~~v~~l~wsP~~ 94 (143)
.-. +. ...-..+.-+.|+|.-
T Consensus 325 NyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 325 NYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred ceEEEEEEeecCCCcceeeecccc
Confidence 332 22 1234455667777764
No 443
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=57.36 E-value=99 Score=28.04 Aligned_cols=84 Identities=7% Similarity=0.122 Sum_probs=49.2
Q ss_pred CeEecC-CCEEEEEecCCCCeEEEEECCCc------eE-Eee-------e---ccCceEEEEECCCCCEEEEeecCccee
Q psy5876 1 MKLRMR-GTHIVLAELRDTGSLEFVDTGDF------SV-MNA-------A---EHHQATDVEWDPTGRYVMSGVSLWKTK 62 (143)
Q Consensus 1 i~~SPd-G~~las~~~~~dg~i~iWd~~~~------~~-~~~-------~---~~~~v~~i~wsPdG~~lat~s~~~~~~ 62 (143)
++|+|. .+.||+.. ..|..-|||+... .. ... + ++..-..|.|.++-..|+.++
T Consensus 151 v~FnP~~~~q~AiVD--~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~------ 222 (765)
T PF10214_consen 151 VAFNPWDQRQFAIVD--EKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN------ 222 (765)
T ss_pred EEeccCccceEEEEe--ccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc------
Confidence 477775 34777777 5799999999210 00 000 0 112234789999988888887
Q ss_pred cCCcEEEEeecCcEEE----ec-cCCcEEEEEEeeC
Q psy5876 63 ADTGYWQWSFQGKIIK----RF-NSPTFCQLRWRPR 93 (143)
Q Consensus 63 ~D~~i~iW~~~g~~l~----~~-~~~~v~~l~wsP~ 93 (143)
-..+.++|+++.... .. ....|.++.=+|.
T Consensus 223 -r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 223 -RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred -CCceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 446677777544221 11 1334555555555
No 444
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=56.70 E-value=1.2e+02 Score=25.72 Aligned_cols=49 Identities=14% Similarity=0.061 Sum_probs=24.6
Q ss_pred EecCCCEEEEEecCCCCeEEEEECCCceEEeee--ccCc---eEEEEECCCCCEEEEee
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA--EHHQ---ATDVEWDPTGRYVMSGV 56 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~--~~~~---v~~i~wsPdG~~lat~s 56 (143)
.-|||.+++..+ +.+...|.- |+.+... +... =-++.+-|+|.+|+.+.
T Consensus 155 ~l~nG~ll~~~~----~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 155 QLPNGNLLIGSG----NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILAS 208 (477)
T ss_dssp E-TTS-EEEEEB----TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEE
T ss_pred EcCCCCEEEecC----CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEe
Confidence 458898887654 566777754 3333222 1100 12567889999998887
No 445
>KOG2280|consensus
Probab=55.97 E-value=47 Score=30.30 Aligned_cols=96 Identities=10% Similarity=0.130 Sum_probs=58.8
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeeec---cCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEE
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE---HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKII 77 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~---~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l 77 (143)
++.||++++||.-. ..|.|.+-+.+.-+++..+. +.+...++|--+..-+ .+ .+..+.+....|..+
T Consensus 222 i~VS~n~~~laLyt--~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVv--l~------~e~~l~lvgp~gd~V 291 (829)
T KOG2280|consen 222 ISVSPNRRFLALYT--ETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVV--LS------WEVNLMLVGPPGDSV 291 (829)
T ss_pred EEEcCCcceEEEEe--cCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceE--EE------EeeeEEEEcCCCCcc
Confidence 35799999999987 58999888888655555543 3344477776444211 11 233444454455555
Q ss_pred EeccCCcEEEEEEeeCCCeeeecCchhhHH
Q psy5876 78 KRFNSPTFCQLRWRPRPASLLSKEQVDKIK 107 (143)
Q Consensus 78 ~~~~~~~v~~l~wsP~~~~l~s~s~d~~i~ 107 (143)
..+-...+. +.=-+||-+++|.+.-.-++
T Consensus 292 ~f~yd~t~~-l~~E~DGVRI~t~t~~EFl~ 320 (829)
T KOG2280|consen 292 QFYYDETAI-LSAEVDGVRIITSTSHEFLQ 320 (829)
T ss_pred ccccCCCce-eeeccCeeEEeccchHHHHH
Confidence 443322333 66778888899876655544
No 446
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=55.79 E-value=55 Score=25.18 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=31.5
Q ss_pred CCcEEEEeecC---cEEEecc-CCcEEEEEEeeCCCeeeecCchh
Q psy5876 64 DTGYWQWSFQG---KIIKRFN-SPTFCQLRWRPRPASLLSKEQVD 104 (143)
Q Consensus 64 D~~i~iW~~~g---~~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~ 104 (143)
...|.+|++.+ +.+..+. .+.|..+..++-|.+|+|=+++.
T Consensus 37 g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~ 81 (215)
T PF14761_consen 37 GCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKN 81 (215)
T ss_pred CCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeec
Confidence 45799999962 2444554 68999999999999999976543
No 447
>PF13072 DUF3936: Protein of unknown function (DUF3936)
Probab=55.37 E-value=14 Score=20.55 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=21.0
Q ss_pred eeeecCchhhHHhhhhhhchhccHHhH
Q psy5876 96 SLLSKEQVDKIKKSLKKYTPAFEAKDR 122 (143)
Q Consensus 96 ~l~s~s~d~~i~~~~~~~~~~~e~~~~ 122 (143)
.++-.+..=+||..|++|.++|+...+
T Consensus 9 ~i~lvGKAWeIr~~Lkey~k~~~~v~e 35 (38)
T PF13072_consen 9 GIILVGKAWEIRAKLKEYGKQFGYVKE 35 (38)
T ss_pred eEEEEehHHHHHHHHHHHHHhhhhHHH
Confidence 444455677999999999999987543
No 448
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=54.57 E-value=12 Score=22.22 Aligned_cols=13 Identities=8% Similarity=0.202 Sum_probs=8.8
Q ss_pred eEecCCCEEEEEe
Q psy5876 2 KLRMRGTHIVLAE 14 (143)
Q Consensus 2 ~~SPdG~~las~~ 14 (143)
..+|||+||+.|.
T Consensus 37 Y~~~dg~yli~G~ 49 (57)
T PF10411_consen 37 YVDEDGRYLIQGQ 49 (57)
T ss_dssp EEETTSSEEEES-
T ss_pred EEcCCCCEEEEeE
Confidence 3578888887753
No 449
>KOG2377|consensus
Probab=54.31 E-value=1e+02 Score=26.96 Aligned_cols=50 Identities=4% Similarity=0.092 Sum_probs=38.3
Q ss_pred CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc---EEE--ecc--CCcEEEEEEeeC
Q psy5876 38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK---IIK--RFN--SPTFCQLRWRPR 93 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~---~l~--~~~--~~~v~~l~wsP~ 93 (143)
++|.+|.||||.+-||.-- .|+.|.++++.|. ++. +.. ...|..+.|+..
T Consensus 67 G~I~SIkFSlDnkilAVQR------~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s 123 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQR------TSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS 123 (657)
T ss_pred CceeEEEeccCcceEEEEe------cCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC
Confidence 5899999999999999887 5999999999653 222 222 346899999855
No 450
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=53.95 E-value=47 Score=25.93 Aligned_cols=79 Identities=9% Similarity=0.030 Sum_probs=48.1
Q ss_pred EEEECCCceE--EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecC---cE-EEe----cc-CCcEEEEEE
Q psy5876 22 EFVDTGDFSV--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQG---KI-IKR----FN-SPTFCQLRW 90 (143)
Q Consensus 22 ~iWd~~~~~~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g---~~-l~~----~~-~~~v~~l~w 90 (143)
.+||..+.+. +......-|.+-++-|||+.|.+|+... ..+.+++++... .+ ... .. ...-.+..-
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 4688776443 2222223577778999999999998632 235688887633 11 111 11 223445555
Q ss_pred eeCCCeeeecCch
Q psy5876 91 RPRPASLLSKEQV 103 (143)
Q Consensus 91 sP~~~~l~s~s~d 103 (143)
=|||+.|+-|+..
T Consensus 126 L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 126 LPDGRVLIVGGSN 138 (243)
T ss_pred CCCCCEEEEeCcC
Confidence 7899998888766
No 451
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=53.01 E-value=1.2e+02 Score=24.24 Aligned_cols=72 Identities=13% Similarity=0.227 Sum_probs=41.5
Q ss_pred CeEEEEECCCceE--EeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc-------CCcEEEEE
Q psy5876 19 GSLEFVDTGDFSV--MNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN-------SPTFCQLR 89 (143)
Q Consensus 19 g~i~iWd~~~~~~--~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~-------~~~v~~l~ 89 (143)
..|.+||..+.+= +-..=...|+++.|.-+.+.++.|.-...-.....+..||++++...... ..+|..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 4699999775332 21111257999999977777777652110002345667888766543322 24566665
Q ss_pred E
Q psy5876 90 W 90 (143)
Q Consensus 90 w 90 (143)
+
T Consensus 96 ~ 96 (281)
T PF12768_consen 96 F 96 (281)
T ss_pred e
Confidence 5
No 452
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=52.42 E-value=34 Score=28.80 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=17.1
Q ss_pred cCceEEEEECCCCCEEEEeec
Q psy5876 37 HHQATDVEWDPTGRYVMSGVS 57 (143)
Q Consensus 37 ~~~v~~i~wsPdG~~lat~s~ 57 (143)
++.-..|.|+|||+++++.++
T Consensus 176 ~H~g~~l~f~pDG~Lyvs~G~ 196 (399)
T COG2133 176 HHFGGRLVFGPDGKLYVTTGS 196 (399)
T ss_pred CcCcccEEECCCCcEEEEeCC
Confidence 456788999999998877775
No 453
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=52.18 E-value=75 Score=21.85 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=36.1
Q ss_pred ECCCCC-EEEEeecCcceecCCcEEEEeecCcEEEecc-CCcEEEEEEeeCCCeeeecCchhhH
Q psy5876 45 WDPTGR-YVMSGVSLWKTKADTGYWQWSFQGKIIKRFN-SPTFCQLRWRPRPASLLSKEQVDKI 106 (143)
Q Consensus 45 wsPdG~-~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~-~~~v~~l~wsP~~~~l~s~s~d~~i 106 (143)
|.-||+ .|+.|| .|..|++|+-+ ..+.+.. .+.|..++=.+. .+++-+-+.++|
T Consensus 10 ~d~dg~~eLlvGs------~D~~IRvf~~~-e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTV 65 (111)
T PF14783_consen 10 FDGDGENELLVGS------DDFEIRVFKGD-EIVAEITETDKVTSLCSLGG-GRFAYALANGTV 65 (111)
T ss_pred cCCCCcceEEEec------CCcEEEEEeCC-cEEEEEecccceEEEEEcCC-CEEEEEecCCEE
Confidence 344554 688888 58999999754 4555554 567777766655 557776677766
No 454
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=51.46 E-value=1.2e+02 Score=24.98 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=44.7
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECC------Cc-eEEeeec-------cCceEEEEECCCCCEEEEeecCc---c---
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTG------DF-SVMNAAE-------HHQATDVEWDPTGRYVMSGVSLW---K--- 60 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~------~~-~~~~~~~-------~~~v~~i~wsPdG~~lat~s~~~---~--- 60 (143)
|+|+|.|.+-++.. ..+...+||.+ .. .++-+.+ ....+.+.|+....+.++..... +
T Consensus 28 ia~~p~~~~WVadn--gT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 28 LSYRPGGPFWVANT--GTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred eEecCCCCEEEecC--CcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 57899998888765 47899999986 11 2222322 13578999998777766552211 0
Q ss_pred eecCCcEEEEee
Q psy5876 61 TKADTGYWQWSF 72 (143)
Q Consensus 61 ~~~D~~i~iW~~ 72 (143)
...|++|.=|..
T Consensus 106 ~tEdGTisaW~p 117 (336)
T TIGR03118 106 VTEDGTLSGWAP 117 (336)
T ss_pred EeCCceEEeecC
Confidence 125777777764
No 455
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=51.22 E-value=88 Score=22.35 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred ecCCCEEEEEecCCCCeEEEEECCCceEEeeec-cCceEEEEE----CCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876 4 RMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-HHQATDVEW----DPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK 78 (143)
Q Consensus 4 SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~-~~~v~~i~w----sPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~ 78 (143)
+.+...|+.|+ ..++..||+.....+..-+ ..+++.+.+ .-+...++.|+ .-.|.-||.+|..++
T Consensus 61 ~~~~D~LliGt---~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-------ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 61 DDGRDCLLIGT---QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-------NCSIQGFDYEGNEIF 130 (136)
T ss_pred CCCcCEEEEec---cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-------eEEEEEeCCCCcEEE
No 456
>KOG3630|consensus
Probab=50.24 E-value=33 Score=32.79 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=39.1
Q ss_pred CeEecCCCEEEEEecCCCCeEEEEECCCceEEeee------ccCceEEEEECCCCCEEEEeec
Q psy5876 1 MKLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAA------EHHQATDVEWDPTGRYVMSGVS 57 (143)
Q Consensus 1 i~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~------~~~~v~~i~wsPdG~~lat~s~ 57 (143)
++|||.|+.+++|- ..|++.-|--. ++..... +...|.+|+|--.-.+++.-+.
T Consensus 204 v~WSprGKQl~iG~--nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~n 263 (1405)
T KOG3630|consen 204 VLWSPRGKQLFIGR--NNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYGN 263 (1405)
T ss_pred EEeccccceeeEec--CCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEecc
Confidence 58999999999986 57998888744 2222221 2346999999988888877653
No 457
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=49.07 E-value=40 Score=29.77 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=17.8
Q ss_pred CceEEEEECCCCCEEEEeecC
Q psy5876 38 HQATDVEWDPTGRYVMSGVSL 58 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~~ 58 (143)
..++.++|||||+.+..+-+-
T Consensus 554 ~E~tG~~FspD~~TlFV~vQH 574 (616)
T COG3211 554 CEFTGPCFSPDGKTLFVNVQH 574 (616)
T ss_pred ceeecceeCCCCceEEEEecC
Confidence 478999999999998888753
No 458
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=48.93 E-value=24 Score=32.60 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=41.9
Q ss_pred EEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEe-cc-CCcEEEEEEeeCCCeeeecCch
Q psy5876 42 DVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKR-FN-SPTFCQLRWRPRPASLLSKEQV 103 (143)
Q Consensus 42 ~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~-~~-~~~v~~l~wsP~~~~l~s~s~d 103 (143)
-|+|--|.+|.+.+....+. -..+++|+-.|++=.. .+ ...-..++|.|+|..++|-+-|
T Consensus 206 ~i~wrgD~~y~~v~r~Ee~p--rra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td 267 (1243)
T COG5290 206 IIFWRGDTEYNLVGRSEERP--RRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTD 267 (1243)
T ss_pred EEEEccCcceeeecchhccc--ccceeeeccccccccccCCcccchhccccccCCceeeeeccC
Confidence 57898899998888864332 2468888877765332 22 3455679999999999986533
No 459
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=48.76 E-value=39 Score=17.58 Aligned_cols=33 Identities=6% Similarity=-0.199 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc
Q psy5876 38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK 75 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~ 75 (143)
..+..++|+|.++.|.-+.. ..+.|...+++|.
T Consensus 9 ~~~~~la~d~~~~~lYw~D~-----~~~~I~~~~~~g~ 41 (43)
T smart00135 9 GHPNGLAVDWIEGRLYWTDW-----GLDVIEVANLDGT 41 (43)
T ss_pred CCcCEEEEeecCCEEEEEeC-----CCCEEEEEeCCCC
Confidence 45678999999987665543 2456666666553
No 460
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=47.97 E-value=1.4e+02 Score=23.79 Aligned_cols=70 Identities=11% Similarity=0.165 Sum_probs=40.9
Q ss_pred ecCCCEEE-EEecCCC-CeEEEEECCCceEEeee--c--c----CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 4 RMRGTHIV-LAELRDT-GSLEFVDTGDFSVMNAA--E--H----HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 4 SPdG~~la-s~~~~~d-g~i~iWd~~~~~~~~~~--~--~----~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
+.+|+..+ --.. .. ..|.++|+++++++.+. + + ..+....-++|+.+|... . ...++.+.|.+
T Consensus 51 ~~~~~~yL~f~n~-~~~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~~~~Dsi~l~~~-~-----~~~~l~~~n~~ 123 (333)
T PF13970_consen 51 SSDGKKYLYFLNN-YKSHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFFQNLDSIFLFNS-Y-----AFPKLFLFNSQ 123 (333)
T ss_dssp EETTEEEEEEEE--ST--EEEEEETTTTEEEEEEE-BSSSTTB-TT---EEESSSTTSEEEE-G-----GGTEEEEE-TT
T ss_pred EcCCcEEEEEEcC-CCcceEEEEECCCCceeeeeeeeeECCCCccccccceEcCCceEEEec-C-----CcceEEEEcCC
Confidence 45555444 3331 33 68999999999887653 1 1 134555688899888876 1 24568888888
Q ss_pred CcEEEec
Q psy5876 74 GKIIKRF 80 (143)
Q Consensus 74 g~~l~~~ 80 (143)
|+.+.+.
T Consensus 124 G~~~~~~ 130 (333)
T PF13970_consen 124 GEVLKKI 130 (333)
T ss_dssp --EEEEE
T ss_pred CeEEEEE
Confidence 8877654
No 461
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=47.29 E-value=1.4e+02 Score=23.49 Aligned_cols=97 Identities=14% Similarity=0.248 Sum_probs=54.0
Q ss_pred EecCCCEEEEEecCCCCeEEEE--ECCC--ceEEeee-ccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec----
Q psy5876 3 LRMRGTHIVLAELRDTGSLEFV--DTGD--FSVMNAA-EHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ---- 73 (143)
Q Consensus 3 ~SPdG~~las~~~~~dg~i~iW--d~~~--~~~~~~~-~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~---- 73 (143)
.+..+++|++|.. ...+.++ +.+. ...+.+- ....++++.+-+|++.++.+. .++.+.++...
T Consensus 135 l~~~~~~I~vgD~--~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D------~~gnl~~l~~~~~~~ 206 (321)
T PF03178_consen 135 LSVFKNYILVGDA--MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD------KDGNLFVLRYNPEIP 206 (321)
T ss_dssp EEEETTEEEEEES--SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE------TTSEEEEEEE-SS-S
T ss_pred EeccccEEEEEEc--ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc------CCCeEEEEEECCCCc
Confidence 3455779999884 4556665 5432 3333332 234689999998888777777 58888888764
Q ss_pred ----Cc-EEE---ecc-CCcEEEE---EEeeC--CC------eeeecCchhhHH
Q psy5876 74 ----GK-IIK---RFN-SPTFCQL---RWRPR--PA------SLLSKEQVDKIK 107 (143)
Q Consensus 74 ----g~-~l~---~~~-~~~v~~l---~wsP~--~~------~l~s~s~d~~i~ 107 (143)
+. .+. .++ .+.|..+ +..|. +. .++-++.++.|-
T Consensus 207 ~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 207 NSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp STTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred ccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence 22 222 234 5667777 65662 22 255555555543
No 462
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=46.93 E-value=1.3e+02 Score=24.49 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=5.8
Q ss_pred CCeEEEEECCCceE
Q psy5876 18 TGSLEFVDTGDFSV 31 (143)
Q Consensus 18 dg~i~iWd~~~~~~ 31 (143)
+|.+...|..+++.
T Consensus 344 ~G~l~~ld~~tG~~ 357 (394)
T PRK11138 344 EGYLHWINREDGRF 357 (394)
T ss_pred CCEEEEEECCCCCE
Confidence 34444444444433
No 463
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=45.17 E-value=1.6e+02 Score=23.45 Aligned_cols=84 Identities=13% Similarity=0.309 Sum_probs=0.0
Q ss_pred CCCEEEEEecCCCCeEEEEECCCceEEeeec-------cCceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEE
Q psy5876 6 RGTHIVLAELRDTGSLEFVDTGDFSVMNAAE-------HHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKII 77 (143)
Q Consensus 6 dG~~las~~~~~dg~i~iWd~~~~~~~~~~~-------~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l 77 (143)
||+.|..+. ....++++|..+++.+.+.. -..++.+.|- +|...|-.= ..+.|..-|. +|+.+
T Consensus 138 dg~~Li~SD--GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW------~td~I~~Idp~tG~V~ 208 (264)
T PF05096_consen 138 DGKRLIMSD--GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW------QTDRIVRIDPETGKVV 208 (264)
T ss_dssp CSSCEEEE---SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET------TSSEEEEEETTT-BEE
T ss_pred CCCEEEEEC--CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC------CCCeEEEEeCCCCeEE
Q ss_pred Eec--------------c---CCcEEEEEEeeCCCeee
Q psy5876 78 KRF--------------N---SPTFCQLRWRPRPASLL 98 (143)
Q Consensus 78 ~~~--------------~---~~~v~~l~wsP~~~~l~ 98 (143)
... . .+-++.|||.|....+.
T Consensus 209 ~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~ 246 (264)
T PF05096_consen 209 GWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLF 246 (264)
T ss_dssp EEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEE
T ss_pred EEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEE
No 464
>PF13983 YsaB: YsaB-like lipoprotein
Probab=45.12 E-value=17 Score=23.04 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=10.6
Q ss_pred eEEEEECCCCCEE
Q psy5876 40 ATDVEWDPTGRYV 52 (143)
Q Consensus 40 v~~i~wsPdG~~l 52 (143)
-.-++|+|||++|
T Consensus 60 ~FvCSFD~dGqFL 72 (77)
T PF13983_consen 60 GFVCSFDADGQFL 72 (77)
T ss_pred ceEEeECCCCcEE
Confidence 3467899999987
No 465
>KOG2247|consensus
Probab=43.66 E-value=3.2 Score=35.92 Aligned_cols=91 Identities=15% Similarity=0.350 Sum_probs=58.5
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEec-
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF- 80 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~- 80 (143)
.|-|.|.-++.++ .+..+..||-...............+++|+-+|..++.... ..+.+.+|++..+.-.+.
T Consensus 41 ~w~~e~~nlavac--a~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAe-----k~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 41 RWRPEGHNLAVAC--ANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAE-----KTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred eEecCCCceehhh--hhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhh-----cCCCeeechhhhhhHHHHh
Confidence 5778888888877 47778888855433332223356788999999997766653 467899999964321111
Q ss_pred -c---CCcEEEEEEeeCCCeeeecC
Q psy5876 81 -N---SPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 81 -~---~~~v~~l~wsP~~~~l~s~s 101 (143)
. ...+ ++|+|.++.++-+.
T Consensus 114 ~gg~~s~sl--l~wsKg~~el~ig~ 136 (615)
T KOG2247|consen 114 SGGTSSKSL--LAWSKGTPELVIGN 136 (615)
T ss_pred ccCcchHHH--HhhccCCccccccc
Confidence 1 1222 67787777666653
No 466
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=43.36 E-value=58 Score=27.25 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=18.6
Q ss_pred cCCcEEEEeecCcEEEeccCCcEEEEEE
Q psy5876 63 ADTGYWQWSFQGKIIKRFNSPTFCQLRW 90 (143)
Q Consensus 63 ~D~~i~iW~~~g~~l~~~~~~~v~~l~w 90 (143)
.++++.+||++|+.+......+++.+..
T Consensus 76 K~~GL~VYdL~Gk~lq~~~~Gr~NNVDv 103 (381)
T PF02333_consen 76 KKGGLYVYDLDGKELQSLPVGRPNNVDV 103 (381)
T ss_dssp TTTEEEEEETTS-EEEEE-SS-EEEEEE
T ss_pred CCCCEEEEcCCCcEEEeecCCCcceeee
Confidence 6789999999999998775444444433
No 467
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=43.00 E-value=69 Score=28.80 Aligned_cols=64 Identities=9% Similarity=0.069 Sum_probs=43.0
Q ss_pred ceEEEEECCCCCEEEEeecCcceecCCcEEEEee-cCcEEEeccCCcEEEEEEeeCCCeeeecCch
Q psy5876 39 QATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF-QGKIIKRFNSPTFCQLRWRPRPASLLSKEQV 103 (143)
Q Consensus 39 ~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~-~g~~l~~~~~~~v~~l~wsP~~~~l~s~s~d 103 (143)
.+-.++-|||++++|=+-+..+- ..=++++-|+ +|..+-..-.+....++|.+|++.+.=...|
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~-e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d 194 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGD-EQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLD 194 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccc-cEEEEEEEecccccccchhhcccccceEEecCCCeEEEEEEc
Confidence 56788999999999887643210 1115667777 4655544445567889999999988754443
No 468
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=41.24 E-value=49 Score=20.82 Aligned_cols=35 Identities=9% Similarity=0.212 Sum_probs=21.2
Q ss_pred cEEEEeecCcEEEecc----CCcEEEEEEe---eCCCeeeec
Q psy5876 66 GYWQWSFQGKIIKRFN----SPTFCQLRWR---PRPASLLSK 100 (143)
Q Consensus 66 ~i~iW~~~g~~l~~~~----~~~v~~l~ws---P~~~~l~s~ 100 (143)
.+.|+|..|+.+++.. ......+.|. ++|..+..+
T Consensus 28 ~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G 69 (81)
T PF13860_consen 28 TVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDG 69 (81)
T ss_dssp EEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--SE
T ss_pred EEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCCCC
Confidence 6788888888887643 4467788887 556655544
No 469
>KOG1983|consensus
Probab=40.93 E-value=60 Score=30.57 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=24.7
Q ss_pred eEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcE
Q psy5876 40 ATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKI 76 (143)
Q Consensus 40 v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~ 76 (143)
+....++++|..++++. .|+.+..||++ |+.
T Consensus 237 ~~~~~~~~~~~~~v~~h------~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 237 PNGQLESRDGSHFVSYH------TDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccCccCCceEEEEE------ecCCEEeeecCCCce
Confidence 44444599999999999 69999999996 544
No 470
>KOG4499|consensus
Probab=40.33 E-value=1.3e+02 Score=24.00 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=24.4
Q ss_pred CCeEEEEECCCceEEeee--ccCceEEEEECC
Q psy5876 18 TGSLEFVDTGDFSVMNAA--EHHQATDVEWDP 47 (143)
Q Consensus 18 dg~i~iWd~~~~~~~~~~--~~~~v~~i~wsP 47 (143)
-|+|.-.|..+|+++.++ +...+++++|--
T Consensus 232 g~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 232 GGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 678888999999988765 456799999963
No 471
>KOG0673|consensus
Probab=38.71 E-value=6.2 Score=30.95 Aligned_cols=83 Identities=18% Similarity=0.180 Sum_probs=46.1
Q ss_pred EEEeecCcceecCCcEEEEeecCcE--EEec------c--CCcEEEEEEeeCCCeeeecCchhhHH--hhhhhhc--hhc
Q psy5876 52 VMSGVSLWKTKADTGYWQWSFQGKI--IKRF------N--SPTFCQLRWRPRPASLLSKEQVDKIK--KSLKKYT--PAF 117 (143)
Q Consensus 52 lat~s~~~~~~~D~~i~iW~~~g~~--l~~~------~--~~~v~~l~wsP~~~~l~s~s~d~~i~--~~~~~~~--~~~ 117 (143)
+++|+.+-+.-..++++|||-+|.. +.+. . -.+|+.+.|+--|....++..|=+.+ +.+.+-. -+-
T Consensus 71 fi~G~t~ak~l~~kgv~IWd~ngsrefLds~G~~~re~GDlgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI~~ik~ 150 (293)
T KOG0673|consen 71 FISGSTDAKVLEEKGVHIWDGNGSREFLDSVGFTAREEGDLGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVINKIKN 150 (293)
T ss_pred HHhCCCccchhhhcCceeecCCchHHHHHhcCCCccccCCcccccceeeeecCccccccccccccccHHHHHHHHHHHhc
Confidence 3444443333356799999998752 2221 1 34899999999998877654442222 1122111 112
Q ss_pred cHHhHHHHhhcccccee
Q psy5876 118 EAKDRQRMNKASKYADL 134 (143)
Q Consensus 118 e~~~~~~~~~~~~~~~~ 134 (143)
...|+++..+|-.-.|+
T Consensus 151 NP~drRIimsAwNP~dl 167 (293)
T KOG0673|consen 151 NPDDRRIIMSAWNPLDL 167 (293)
T ss_pred CCccceeeeeccCcccc
Confidence 33456666666665555
No 472
>KOG0184|consensus
Probab=38.39 E-value=39 Score=26.30 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=15.0
Q ss_pred cCceEEEEECCCCCEEEEee
Q psy5876 37 HHQATDVEWDPTGRYVMSGV 56 (143)
Q Consensus 37 ~~~v~~i~wsPdG~~lat~s 56 (143)
|-++-..-+.|||++|+...
T Consensus 73 ~iG~avaGl~~Dg~~l~~~a 92 (254)
T KOG0184|consen 73 HIGMAVAGLIPDGRHLVNRA 92 (254)
T ss_pred cccEEEeccccchHHHHHHH
Confidence 44667778899999987653
No 473
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=38.30 E-value=18 Score=25.22 Aligned_cols=21 Identities=5% Similarity=0.118 Sum_probs=14.2
Q ss_pred eEecCCCEEEEEecCCCCeEEEE
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFV 24 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iW 24 (143)
-|||||++|...- .|..+.=.
T Consensus 74 vfSpDG~~lSFTY--NDhVmhe~ 94 (122)
T PF12566_consen 74 VFSPDGSWLSFTY--NDHVMHEL 94 (122)
T ss_pred EECCCCCEEEEEe--cchhhccc
Confidence 4999999996653 36655433
No 474
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=37.70 E-value=1.6e+02 Score=24.26 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=38.6
Q ss_pred EEECCCceEEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEecc-CCcEEEEEEeeCCCeeee
Q psy5876 23 FVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKRFN-SPTFCQLRWRPRPASLLS 99 (143)
Q Consensus 23 iWd~~~~~~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~~~-~~~v~~l~wsP~~~~l~s 99 (143)
++|+.+++.+... ....-+..|. ||+.-++-+ ..+.+.-+|.+ |+...-.. ......++|. |..++.
T Consensus 189 vidv~s~evl~~G-LsmPhSPRWh-dgrLwvlds------gtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvV 257 (335)
T TIGR03032 189 VIDIPSGEVVASG-LSMPHSPRWY-QGKLWLLNS------GRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFV 257 (335)
T ss_pred EEEeCCCCEEEcC-ccCCcCCcEe-CCeEEEEEC------CCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEE
Confidence 4566666655432 1122334455 666666655 46777778885 76433222 4566788888 776654
No 475
>KOG2444|consensus
Probab=37.30 E-value=2e+02 Score=22.50 Aligned_cols=92 Identities=9% Similarity=0.015 Sum_probs=47.4
Q ss_pred CEEEEEecCCCCeEEEEECCCce----EEeeeccCceEEEEECCCCCEEEEeecCcceecCCcEEEEeec-CcEEEe--c
Q psy5876 8 THIVLAELRDTGSLEFVDTGDFS----VMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ-GKIIKR--F 80 (143)
Q Consensus 8 ~~las~~~~~dg~i~iWd~~~~~----~~~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~-g~~l~~--~ 80 (143)
..|+.|+ .+|.|.+|+.+-.- .+........+.|.=--++.+..+++ .|+.++.|+.. ++.+-. .
T Consensus 71 ~~~~vG~--~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~------~dg~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 71 AKLMVGT--SDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGA------QDGRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred ceEEeec--ccceEEEecCCccchHHHhhhcccccceeccccccccceeEEec------cCCceeeeccccCceeeeecc
Confidence 3566666 58999999876211 11111111112222222333444555 58889999885 544322 2
Q ss_pred cC-CcEEEEEEeeCCCeeeec--CchhhHH
Q psy5876 81 NS-PTFCQLRWRPRPASLLSK--EQVDKIK 107 (143)
Q Consensus 81 ~~-~~v~~l~wsP~~~~l~s~--s~d~~i~ 107 (143)
+. ..+..+.-+--+..|+.. |.+..++
T Consensus 143 h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k 172 (238)
T KOG2444|consen 143 HNFESGEELIVVGSDEFLKIADTSHDRVLK 172 (238)
T ss_pred ccCCCcceeEEecCCceEEeeccccchhhh
Confidence 22 344445555555666665 6666665
No 476
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=37.22 E-value=1e+02 Score=28.76 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=34.0
Q ss_pred eEecCCCEEEE-EecCC---CCeEEEEECCC-ce-EE-eeeccCceEEEEECCCCCEEEEeec
Q psy5876 2 KLRMRGTHIVL-AELRD---TGSLEFVDTGD-FS-VM-NAAEHHQATDVEWDPTGRYVMSGVS 57 (143)
Q Consensus 2 ~~SPdG~~las-~~~~~---dg~i~iWd~~~-~~-~~-~~~~~~~v~~i~wsPdG~~lat~s~ 57 (143)
.|||||++||= .++.. ...|.+-|+.+ +. ++ ...+...|-.-.-.++|...++-.+
T Consensus 356 ~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~ 418 (912)
T TIGR02171 356 DISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDTVIVYVS 418 (912)
T ss_pred cCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCCeEEEEEc
Confidence 59999999998 45431 22477777663 22 12 2234445666666778887665543
No 477
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=36.79 E-value=44 Score=19.86 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=8.1
Q ss_pred eEecCCCEEEEEe
Q psy5876 2 KLRMRGTHIVLAE 14 (143)
Q Consensus 2 ~~SPdG~~las~~ 14 (143)
.|.|||+.||...
T Consensus 31 a~~pdG~lvAL~~ 43 (56)
T PF09142_consen 31 AFAPDGRLVALLE 43 (56)
T ss_dssp EE-TTS-EEEEEE
T ss_pred EECCCCcEEEEEE
Confidence 4678888888764
No 478
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=36.20 E-value=60 Score=16.09 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=17.9
Q ss_pred cCCCEEEEEecCCCCeEEEEECCCceEEee
Q psy5876 5 MRGTHIVLAELRDTGSLEFVDTGDFSVMNA 34 (143)
Q Consensus 5 PdG~~las~~~~~dg~i~iWd~~~~~~~~~ 34 (143)
.+| .+..++ .+|.+.-.|..+++.+-+
T Consensus 5 ~~~-~v~~~~--~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 5 SDG-TVYVGS--TDGTLYALDAKTGEILWT 31 (33)
T ss_pred ECC-EEEEEc--CCCEEEEEEcccCcEEEE
Confidence 344 344555 478999999888876543
No 479
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=33.79 E-value=1.5e+02 Score=19.92 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCceEEee-ec-c-C-ceEEEEECCCCCEEEEee
Q psy5876 17 DTGSLEFVDTGDFSVMNA-AE-H-H-QATDVEWDPTGRYVMSGV 56 (143)
Q Consensus 17 ~dg~i~iWd~~~~~~~~~-~~-~-~-~v~~i~wsPdG~~lat~s 56 (143)
.||.+.|+|......=.+ .. . . ....+....||.+++-..
T Consensus 27 ~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~ 70 (114)
T PF01453_consen 27 SDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDS 70 (114)
T ss_dssp TTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEET
T ss_pred CCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEee
Confidence 478888888663222122 11 1 2 367788888998877643
No 480
>PRK13614 lipoprotein LpqB; Provisional
Probab=33.05 E-value=3.5e+02 Score=23.97 Aligned_cols=88 Identities=9% Similarity=0.050 Sum_probs=47.7
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCCceEE-eeeccCceEEEEECCCCCEEEEeecCcceecCC--cEEEEeecCc---
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGDFSVM-NAAEHHQATDVEWDPTGRYVMSGVSLWKTKADT--GYWQWSFQGK--- 75 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~~~~~-~~~~~~~v~~i~wsPdG~~lat~s~~~~~~~D~--~i~iW~~~g~--- 75 (143)
+.|++|+.+|..+ .++ -.+|-...+... .-.....++.-+|+++| .+=+.-. ++ .+....-.|.
T Consensus 349 avS~~g~~~A~~~--~~~-~~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~------g~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 349 AESPVSQTVAFLN--GSR-TTLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGP------GGNGRIVAYRPTGVAEG 418 (573)
T ss_pred eecCCCceEEEec--CCC-cEEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeC------CCCceEEEEecCCCccc
Confidence 5689999988875 355 234432222211 11233457778899988 4434331 22 3333333232
Q ss_pred ------EEE-ecc-CCcEEEEEEeeCCCeeee
Q psy5876 76 ------IIK-RFN-SPTFCQLRWRPRPASLLS 99 (143)
Q Consensus 76 ------~l~-~~~-~~~v~~l~wsP~~~~l~s 99 (143)
.+. .+. ...|..+..|+||-+++-
T Consensus 419 ~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Av 450 (573)
T PRK13614 419 AQAPTVTLTADWLAGRTVKELRVSREGVRALV 450 (573)
T ss_pred ccccceeecccccCCCeeEEEEECCCccEEEE
Confidence 111 112 235999999999987764
No 481
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=33.03 E-value=1.5e+02 Score=19.65 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=6.5
Q ss_pred CCCCCEEEEee
Q psy5876 46 DPTGRYVMSGV 56 (143)
Q Consensus 46 sPdG~~lat~s 56 (143)
.+||+..+...
T Consensus 51 ~~~G~v~~~~~ 61 (111)
T PF06268_consen 51 DSDGSVVADSE 61 (111)
T ss_dssp ETTSEEEEEES
T ss_pred cCCCeEEecCC
Confidence 46776555554
No 482
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=33.02 E-value=2.5e+02 Score=22.21 Aligned_cols=69 Identities=12% Similarity=0.247 Sum_probs=40.4
Q ss_pred eEecCCCEEEEEecCCCCeEEEEECCC------ceEEeeecc--CceEEEEECC--CCCEEEEeecCcce------ecCC
Q psy5876 2 KLRMRGTHIVLAELRDTGSLEFVDTGD------FSVMNAAEH--HQATDVEWDP--TGRYVMSGVSLWKT------KADT 65 (143)
Q Consensus 2 ~~SPdG~~las~~~~~dg~i~iWd~~~------~~~~~~~~~--~~v~~i~wsP--dG~~lat~s~~~~~------~~D~ 65 (143)
+.+++|....+-- ..+.|..||.++ .+.+..-+. ..+.++.+.+ +|...+.+....+. ..+.
T Consensus 192 ~~D~~G~ly~~~~--~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~~~~~~~~~~~e~ 269 (287)
T PF03022_consen 192 AIDPNGNLYFTDV--EQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQRFAYGNLNPDEV 269 (287)
T ss_dssp EEETTTEEEEEEC--CCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--SSTGGG---SS-
T ss_pred EECCCCcEEEecC--CCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcchHhhccCCCCCcc
Confidence 4677887666654 468899999875 334444332 4689999999 99877777653321 1234
Q ss_pred cEEEEee
Q psy5876 66 GYWQWSF 72 (143)
Q Consensus 66 ~i~iW~~ 72 (143)
.++||..
T Consensus 270 nfri~~~ 276 (287)
T PF03022_consen 270 NFRIWRA 276 (287)
T ss_dssp SEEEEES
T ss_pred EEeEEEe
Confidence 5666654
No 483
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=33.00 E-value=1.8e+02 Score=20.59 Aligned_cols=51 Identities=6% Similarity=0.085 Sum_probs=27.0
Q ss_pred CceEEEEECCCCCEEEEeecCcceecCCcEEEEeecCc--EEEe---cc-CCcEEEEEEeeC
Q psy5876 38 HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGK--IIKR---FN-SPTFCQLRWRPR 93 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~--~l~~---~~-~~~v~~l~wsP~ 93 (143)
.++.-.-|++|-..|..++. .|+.|+.|.+... .++. .. ......+++-|.
T Consensus 11 ~g~L~P~yD~dt~llyl~gK-----GD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lPK 67 (136)
T PF08954_consen 11 SGVLMPFYDEDTNLLYLAGK-----GDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLPK 67 (136)
T ss_dssp SS-EEEEE-TTT-EEEEEET-----T-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--G
T ss_pred CceeEeeEcCCCCEEEEEec-----cCcEEEEEEEcCCCCceEEccccccCCCeEeeEecCc
Confidence 45666778899888888774 6889999998644 3332 22 445667777664
No 484
>COG5497 Predicted secreted protein [Function unknown]
Probab=32.75 E-value=30 Score=26.84 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=13.0
Q ss_pred CeEecCCCEEEEEecC
Q psy5876 1 MKLRMRGTHIVLAELR 16 (143)
Q Consensus 1 i~~SPdG~~las~~~~ 16 (143)
+-|||||++++-+-.+
T Consensus 27 lGFS~dG~~Faf~~yG 42 (228)
T COG5497 27 LGFSPDGRYFAFAEYG 42 (228)
T ss_pred eeeccCCCEEeehhcc
Confidence 4699999999987544
No 485
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=32.10 E-value=27 Score=23.55 Aligned_cols=18 Identities=17% Similarity=0.632 Sum_probs=12.6
Q ss_pred ceEEEEECCCCCEEEEee
Q psy5876 39 QATDVEWDPTGRYVMSGV 56 (143)
Q Consensus 39 ~v~~i~wsPdG~~lat~s 56 (143)
..+...|.|.-.+.++|+
T Consensus 61 ~~sg~~w~P~~gwa~agg 78 (109)
T COG4831 61 ALSGMNWTPQNGWAVAGG 78 (109)
T ss_pred hhhcCccccccceEEecC
Confidence 456667888877766666
No 486
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=31.98 E-value=2.9e+02 Score=22.76 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=50.8
Q ss_pred CCCEEEEEecCCCCeEEEEECCCceEEee--e-----c----cCceEEEEECCCCCEEEEeec-Cc-ce-----ecCCcE
Q psy5876 6 RGTHIVLAELRDTGSLEFVDTGDFSVMNA--A-----E----HHQATDVEWDPTGRYVMSGVS-LW-KT-----KADTGY 67 (143)
Q Consensus 6 dG~~las~~~~~dg~i~iWd~~~~~~~~~--~-----~----~~~v~~i~wsPdG~~lat~s~-~~-~~-----~~D~~i 67 (143)
.+.+|-.+.| .+++|.++|..=.+.... + + ...|..| .|+.++|--. +. +. ..-+-|
T Consensus 150 ~~~~LYaadF-~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~V 224 (336)
T TIGR03118 150 GGDYLYAANF-RQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYV 224 (336)
T ss_pred CCceEEEecc-CCCceEEecCccccccCCCCccCCCCCCCCCCcceEEE----CCeEEEEEEecCCcccccccCCCcceE
Confidence 3678888888 589999999552111110 1 1 1122222 3555544432 00 00 012467
Q ss_pred EEEeecCcEEEeccCC----cEEEEEEee------CCCeeeecCchhhH
Q psy5876 68 WQWSFQGKIIKRFNSP----TFCQLRWRP------RPASLLSKEQVDKI 106 (143)
Q Consensus 68 ~iW~~~g~~l~~~~~~----~v~~l~wsP------~~~~l~s~s~d~~i 106 (143)
-+||.+|++++++... .=|.++..| -|..|+----|++|
T Consensus 225 dvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~I 273 (336)
T TIGR03118 225 NVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTI 273 (336)
T ss_pred EEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCcee
Confidence 8999999999876422 224444433 34555554456655
No 487
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=30.60 E-value=3.2e+02 Score=22.79 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=37.4
Q ss_pred CEEEEEecCCCCeEEEEECCCceEEeeec----------cCceEEEEECC-----CC---CEEEEeecCcceecCCcEEE
Q psy5876 8 THIVLAELRDTGSLEFVDTGDFSVMNAAE----------HHQATDVEWDP-----TG---RYVMSGVSLWKTKADTGYWQ 69 (143)
Q Consensus 8 ~~las~~~~~dg~i~iWd~~~~~~~~~~~----------~~~v~~i~wsP-----dG---~~lat~s~~~~~~~D~~i~i 69 (143)
-++|+|. .+|.+.|.|+.....+.... ...++++.|+. |+ -.+.+|. ..+.+.+
T Consensus 98 GFvaigy--~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT------n~G~v~~ 169 (395)
T PF08596_consen 98 GFVAIGY--ESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT------NSGNVLT 169 (395)
T ss_dssp SEEEEEE--TTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE------TTSEEEE
T ss_pred cEEEEEe--cCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe------CCCCEEE
Confidence 3888887 68999999998777766521 12577888872 33 3456666 3566777
Q ss_pred Eee
Q psy5876 70 WSF 72 (143)
Q Consensus 70 W~~ 72 (143)
|.+
T Consensus 170 fkI 172 (395)
T PF08596_consen 170 FKI 172 (395)
T ss_dssp EEE
T ss_pred EEE
Confidence 755
No 488
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=29.89 E-value=1.4e+02 Score=26.06 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=15.6
Q ss_pred CCcEEEEEEeeCCCeeee
Q psy5876 82 SPTFCQLRWRPRPASLLS 99 (143)
Q Consensus 82 ~~~v~~l~wsP~~~~l~s 99 (143)
...+..++|+||++.|..
T Consensus 501 gaE~tG~~fspDg~tlFv 518 (524)
T PF05787_consen 501 GAEITGPCFSPDGRTLFV 518 (524)
T ss_pred CcccccceECCCCCEEEE
Confidence 458999999999998875
No 489
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=29.48 E-value=67 Score=24.92 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=12.6
Q ss_pred EEEECCCCCEEEEee
Q psy5876 42 DVEWDPTGRYVMSGV 56 (143)
Q Consensus 42 ~i~wsPdG~~lat~s 56 (143)
-+-.+|||+|++.|.
T Consensus 60 i~Y~t~dg~y~i~G~ 74 (251)
T PRK11657 60 TIYLTPDGKHAISGY 74 (251)
T ss_pred EEEEcCCCCEEEEEE
Confidence 356889999999987
No 490
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=29.32 E-value=1.1e+02 Score=25.63 Aligned_cols=58 Identities=10% Similarity=0.089 Sum_probs=34.6
Q ss_pred CCEEEEEecCCCCeEEEEECCCceEEeeecc------CceEEEEECCCCCEEEEeecCcceecCCcEEEEeec
Q psy5876 7 GTHIVLAELRDTGSLEFVDTGDFSVMNAAEH------HQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQ 73 (143)
Q Consensus 7 G~~las~~~~~dg~i~iWd~~~~~~~~~~~~------~~v~~i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~ 73 (143)
+..|++-. .+|.++++.+...+.+..... ..+...+++++|..++-.+ ...+.++++-
T Consensus 272 ~~~Lv~l~--~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g-------psE~~l~sv~ 335 (395)
T PF08596_consen 272 GYCLVCLF--NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG-------PSEIQLFSVW 335 (395)
T ss_dssp EEEEEEEE--TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S-------SSEEEEEEEE
T ss_pred ceEEEEEE--CCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC-------cccEEEEEEE
Confidence 33444443 589999999998887765432 2356778899999777666 4456666664
No 491
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=29.01 E-value=1.4e+02 Score=27.16 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=31.3
Q ss_pred CCEEEEEecCCCCeEEEEECCCceEEeee----c-------------cCc----eEEEEECCCCCEEEEee
Q psy5876 7 GTHIVLAELRDTGSLEFVDTGDFSVMNAA----E-------------HHQ----ATDVEWDPTGRYVMSGV 56 (143)
Q Consensus 7 G~~las~~~~~dg~i~iWd~~~~~~~~~~----~-------------~~~----v~~i~wsPdG~~lat~s 56 (143)
|.+|+.+ + .||+|+++|..+.+.+... . +++ +..++|||++--++.-.
T Consensus 271 ~~~v~~~-~-~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 271 DIVVAFA-F-SDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CcEEEEE-E-cCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 4455555 4 6999999998876443222 1 112 23488999998777776
No 492
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=28.78 E-value=90 Score=17.28 Aligned_cols=25 Identities=16% Similarity=0.225 Sum_probs=16.5
Q ss_pred ecCCCEEEEEec---C---CCCeEEEEECCC
Q psy5876 4 RMRGTHIVLAEL---R---DTGSLEFVDTGD 28 (143)
Q Consensus 4 SPdG~~las~~~---~---~dg~i~iWd~~~ 28 (143)
.++++.++.||. + ....+.++|+++
T Consensus 9 ~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t 39 (49)
T PF07646_consen 9 VLDGKIYVFGGYGTDNGGSSSNDVWVFDTET 39 (49)
T ss_pred EECCEEEEECCcccCCCCcccceeEEEECCC
Confidence 467888888876 1 224677777665
No 493
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.77 E-value=1e+02 Score=24.95 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=35.7
Q ss_pred CceEEEEECCCCCEEEEeecCcce-------------e--cCCcEE-EEeecCcEEEeccCCcEEEEEEeeCCCeeeecC
Q psy5876 38 HQATDVEWDPTGRYVMSGVSLWKT-------------K--ADTGYW-QWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKE 101 (143)
Q Consensus 38 ~~v~~i~wsPdG~~lat~s~~~~~-------------~--~D~~i~-iW~~~g~~l~~~~~~~v~~l~wsP~~~~l~s~s 101 (143)
+.++++.|-|||+.|+...+...| . .|..+. +-|.+|+.+...-.-.--.++.+ +|..++|-+
T Consensus 74 galSairf~~dG~~fiav~DtG~wfeg~i~rDa~grl~Gl~dgr~~pm~d~~Gqpi~~K~e~DaEGLAvr-dG~~~VsfE 152 (340)
T COG4246 74 GALSAIRFLPDGSQFIAVTDTGHWFEGKIQRDANGRLAGLTDGRLTPMRDLDGQPIQEKWEVDAEGLAVR-DGDALVSFE 152 (340)
T ss_pred cchheeEeccCCceeEEEeecCceEEEEEEeccCCCcccccccceeecccCCCCCCcchhccccccceEe-cCceEEEee
Confidence 468899999999655544432111 0 122222 23444554432211122345555 888888877
Q ss_pred chhhH
Q psy5876 102 QVDKI 106 (143)
Q Consensus 102 ~d~~i 106 (143)
++.-|
T Consensus 153 r~hRI 157 (340)
T COG4246 153 RDHRI 157 (340)
T ss_pred cccee
Confidence 76654
No 494
>PF13313 DUF4082: Domain of unknown function (DUF4082)
Probab=28.35 E-value=1.4e+02 Score=21.71 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=8.3
Q ss_pred EecCCCEEEEEec
Q psy5876 3 LRMRGTHIVLAEL 15 (143)
Q Consensus 3 ~SPdG~~las~~~ 15 (143)
||.+|+.||++.+
T Consensus 53 Wsa~G~lLAt~tf 65 (149)
T PF13313_consen 53 WSADGTLLATATF 65 (149)
T ss_pred ECCCCCEEEEEEE
Confidence 6666666666654
No 495
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=28.19 E-value=53 Score=21.71 Aligned_cols=46 Identities=11% Similarity=-0.019 Sum_probs=28.6
Q ss_pred EEEEecCCCCeEEEEECCCc-e-EEeee------cc-CceEEEEECCCCCEEEEeec
Q psy5876 10 IVLAELRDTGSLEFVDTGDF-S-VMNAA------EH-HQATDVEWDPTGRYVMSGVS 57 (143)
Q Consensus 10 las~~~~~dg~i~iWd~~~~-~-~~~~~------~~-~~v~~i~wsPdG~~lat~s~ 57 (143)
...++ .|.+|+|.+.... + .+... ++ .....--|+++|+.+|++..
T Consensus 46 ~~~aS--ldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~~~G~LvAs~~Q 100 (104)
T cd03444 46 SASAS--LDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFTRDGELVASVAQ 100 (104)
T ss_pred cceEe--eeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEECCCCCEEEEEEE
Confidence 34555 5889999885431 1 22211 11 13556689999999999984
No 496
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=28.07 E-value=3.8e+02 Score=22.81 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=28.2
Q ss_pred EEECCCCCEEEEeecCcceecCCcEEEEeecCcEEEecc-CCcE----EEEEEeeCCCeeeecC
Q psy5876 43 VEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFN-SPTF----CQLRWRPRPASLLSKE 101 (143)
Q Consensus 43 i~wsPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~~~~-~~~v----~~l~wsP~~~~l~s~s 101 (143)
+..-|+|.+++..+ +.++..|..|+.+.... .... .++..-|+|..|+-+.
T Consensus 153 ~~~l~nG~ll~~~~--------~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--------NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILAS 208 (477)
T ss_dssp EEE-TTS-EEEEEB--------TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEE
T ss_pred eeEcCCCCEEEecC--------CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEe
Confidence 66789999887555 46777888888665543 2211 3667788888888665
No 497
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=28.05 E-value=10 Score=31.83 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=24.1
Q ss_pred CCCCCEEEEeecCcceecCCcEEEEeecCcEEE
Q psy5876 46 DPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIK 78 (143)
Q Consensus 46 sPdG~~lat~s~~~~~~~D~~i~iW~~~g~~l~ 78 (143)
..+|--++|+|+++. ..+++++++-.|..+.
T Consensus 88 ~~~gGI~iTaSHnP~--~~nGiK~~~~~G~~i~ 118 (443)
T TIGR01455 88 RADAGVMISASHNPY--EDNGIKFFGPGGFKLD 118 (443)
T ss_pred CCCeEEEEecCCCCc--ccCcEEEecCCCCcCC
Confidence 346777899998764 5789999998887664
No 498
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=27.92 E-value=59 Score=17.89 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=12.9
Q ss_pred cCCCEEEEEecCCCC----eEEEEECCCc
Q psy5876 5 MRGTHIVLAELRDTG----SLEFVDTGDF 29 (143)
Q Consensus 5 PdG~~las~~~~~dg----~i~iWd~~~~ 29 (143)
++++.++.||.+.++ .+.++|+.+.
T Consensus 11 ~~~~i~v~GG~~~~~~~~~d~~~~d~~~~ 39 (49)
T PF13418_consen 11 GDNSIYVFGGRDSSGSPLNDLWIFDIETN 39 (49)
T ss_dssp -TTEEEEE--EEE-TEE---EEEEETTTT
T ss_pred eCCeEEEECCCCCCCcccCCEEEEECCCC
Confidence 567777777754222 5677777654
No 499
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=27.18 E-value=2.8e+02 Score=21.96 Aligned_cols=26 Identities=15% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEEecCCCCeEEEEECCCceEEeeec
Q psy5876 9 HIVLAELRDTGSLEFVDTGDFSVMNAAE 36 (143)
Q Consensus 9 ~las~~~~~dg~i~iWd~~~~~~~~~~~ 36 (143)
.|+.|. .+|.|.|-|...+..+.+..
T Consensus 197 cLViGT--E~~~i~iLd~~af~il~~~~ 222 (257)
T PF14779_consen 197 CLVIGT--ESGEIYILDPQAFTILKQVQ 222 (257)
T ss_pred eEEEEe--cCCeEEEECchhheeEEEEe
Confidence 677777 58999999988877766653
No 500
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=27.15 E-value=1.8e+02 Score=25.23 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=26.5
Q ss_pred CCEEEEEecCCCCeEEEEECCCceEEeeecc-Cce--EEEEECCCCCEE
Q psy5876 7 GTHIVLAELRDTGSLEFVDTGDFSVMNAAEH-HQA--TDVEWDPTGRYV 52 (143)
Q Consensus 7 G~~las~~~~~dg~i~iWd~~~~~~~~~~~~-~~v--~~i~wsPdG~~l 52 (143)
|..+..++ .+|.++.+|..||+.+-++.. ..+ +=+.|.-||+..
T Consensus 472 g~lvf~g~--~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qY 518 (527)
T TIGR03075 472 GDLVFYGT--LEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQY 518 (527)
T ss_pred CcEEEEEC--CCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEE
Confidence 44555555 489999999999988766532 111 223344567643
Done!