RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5876
(143 letters)
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia
coli [TaxId: 562]}
Length = 60
Score = 27.1 bits (60), Expect = 0.24
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 39 QATDVEWDPTGRYVMSGVSL 58
QAT E+D G + G++L
Sbjct: 39 QATSTEYDKDGNIIGYGLTL 58
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 26.7 bits (58), Expect = 1.1
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 15 LRDTGSLEFVDTGDFSVMNAAEHHQAT---DVEWDPTGRYVMSGVSLWKTKADTGYWQW 70
+++TG + VD D + + E D D + RY ++ + +
Sbjct: 181 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239
>d2fika2 d.19.1.1 (A:8-185) CD1, alpha-1 and alpha-2 domains {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 178
Score = 24.9 bits (54), Expect = 3.7
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 52 VMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPT 84
+ +G ++ A + +FQGK + RF +
Sbjct: 93 LSAGCEMYPGNASESFLHVAFQGKYVVRFWGTS 125
>d1onqa2 d.19.1.1 (A:7-183) CD1, alpha-1 and alpha-2 domains {Human
(Homo sapiens), CD1a [TaxId: 9606]}
Length = 177
Score = 24.6 bits (53), Expect = 4.1
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 52 VMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPTFCQLRWRPRPA 95
V G L K + Q ++QG F + + W P P
Sbjct: 92 VTGGCELHSGKVSGSFLQLAYQGSDFVSFQNNS-----WLPYPV 130
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 24.7 bits (52), Expect = 4.6
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 17 DTGSLEFVDTGDFSVMNAAEHHQA--TDVEWDPTGRYVMSG-----VSLWK 60
D +L D + M H+ T +++ T YV++G V +W+
Sbjct: 267 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 24.8 bits (52), Expect = 4.8
Identities = 4/48 (8%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 19 GSLEFVDTGDFSVMNAAEHHQA-TDVEWDPTGRYVMSG-----VSLWK 60
L T + + ++ + + +Y+++G ++++
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle
domain {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Length = 78
Score = 23.7 bits (51), Expect = 5.5
Identities = 5/22 (22%), Positives = 14/22 (63%)
Query: 93 RPASLLSKEQVDKIKKSLKKYT 114
+ L++E++ ++ ++ KKY
Sbjct: 55 KKVKNLTEEEITRLVETFKKYE 76
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 24.2 bits (52), Expect = 7.9
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 64 DTGYWQWSFQGKIIKRFNSPTFC 86
GY W ++ F++P +C
Sbjct: 240 MEGY-NWCHDRNVVTIFSAPNYC 261
>d2po6a2 d.19.1.1 (A:6-183) CD1, alpha-1 and alpha-2 domains {Human
(Homo sapiens), CD1d [TaxId: 9606]}
Length = 178
Score = 23.7 bits (51), Expect = 8.3
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 51 YVMSGVSLWKTKADTGYWQWSFQGKIIKRFN 81
V +G + A ++ +FQGK I F
Sbjct: 92 QVSAGCEVHPGNASNNFFHVAFQGKDILSFQ 122
>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus
amyloliquefaciens [TaxId: 1390]}
Length = 353
Score = 24.2 bits (52), Expect = 8.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 55 GVSLWKTKADTGYWQWSFQGK 75
G++++ GY S QG
Sbjct: 233 GLTIYYAADGKGYLLASSQGN 253
>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 439
Score = 24.1 bits (52), Expect = 8.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 87 QLRWRPRPASLLSKEQVD 104
QLRW+P S+++VD
Sbjct: 93 QLRWKPFEIPKASQKKVD 110
>d1kcgc_ d.19.1.1 (C:) Class I MHC-related molecule Ulbp3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 23.8 bits (51), Expect = 9.2
Identities = 11/69 (15%), Positives = 18/69 (26%)
Query: 13 AELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSF 72
+ + G + A+ P V G WQ+SF
Sbjct: 56 TDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPLTLQVRMSCECEADGYIRGSWQFSF 115
Query: 73 QGKIIKRFN 81
G+ F+
Sbjct: 116 DGRKFLLFD 124
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg)
{Thermus thermophilus [TaxId: 274]}
Length = 89
Score = 22.9 bits (49), Expect = 9.8
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 93 RPASLLSKEQVDKIKKSLKK 112
RPA L++E+ ++ ++L++
Sbjct: 56 RPARSLTEEEARRLYRALRE 75
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.132 0.411
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 546,732
Number of extensions: 23439
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 33
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.7 bits)