RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5878
(565 letters)
>gnl|CDD|153079 cd07932, arginine_kinase_like, Phosphagen (guanidino) kinases such
as arginine kinase and similar enzymes. Eukaryotic
arginine kinase-like phosphagen (guanidino) kinases are
enzymes that transphosphorylate a high energy
phosphoguanidino compound, like phosphoarginine in the
case of arginine kinase (AK), which is used as an
energy-storage and -transport metabolite, to ADP,
thereby creating ATP. The substrate binding site is
located in the cleft between the N and C-terminal
domains, but most of the catalytic residues are found in
the larger C-terminal domain. Besides AK, one of the
most studied members of this family, this model also
represents a phosphagen kinase with different substrate
specificity, hypotaurocyamine kinase (HTK).
Length = 350
Score = 507 bits (1308), Expect = e-179
Identities = 187/257 (72%), Positives = 215/257 (83%), Gaps = 2/257 (0%)
Query: 311 RMGFENPDSGVGIYAPDAEAYIVFADLFDPIIEDYHKGFKKTDKHPPKNWGDVD--SFAN 368
+ G EN DSGVGIYA D EAY VFADLFDP+IEDYH GFK DKHP ++GD+ N
Sbjct: 47 QSGAENLDSGVGIYACDPEAYTVFADLFDPVIEDYHGGFKPEDKHPAPDFGDLKNLELGN 106
Query: 369 LDPNGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTG 428
LDP G++VISTRVRCGRS++GYPFNPCLT+ QY EMEEKV S L L GEL G +YPLTG
Sbjct: 107 LDPEGKYVISTRVRCGRSVEGYPFNPCLTKEQYIEMEEKVKSALETLTGELAGTYYPLTG 166
Query: 429 MTKEVQQKLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLIS 488
M KE QQ+LIDDHFLFKEGDRFLQAA RFWPTGRGI+HND+KTFLVW NEEDHLR+IS
Sbjct: 167 MDKETQQQLIDDHFLFKEGDRFLQAAGGYRFWPTGRGIFHNDDKTFLVWVNEEDHLRIIS 226
Query: 489 MQMGGDLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNLGTTVRASVHIKLPKLAA 548
MQ GGDLG VY+RLV+A+ ++EK+LPF+ DDRLG+LTFCPTNLGTT+RASVHIKLPKL+
Sbjct: 227 MQKGGDLGAVYKRLVTALKELEKKLPFARDDRLGYLTFCPTNLGTTLRASVHIKLPKLSK 286
Query: 549 DLSKLEEIAGRYNLQVR 565
D +L+EI +YNLQVR
Sbjct: 287 DPPRLKEICEKYNLQVR 303
Score = 470 bits (1212), Expect = e-164
Identities = 192/319 (60%), Positives = 221/319 (69%), Gaps = 42/319 (13%)
Query: 10 KPYLTKMVDQATLDKLEAGFAKFQAT-----------------------ESKSLLKKYLT 46
K YLT V L KL+ K T E+ ++
Sbjct: 20 KKYLTPEV----LKKLKDKKTKLGGTLADCIQSGAENLDSGVGIYACDPEAYTVFADLFD 75
Query: 47 KEIFDALKVKK-------TSFGS------SLLD--GEFVISTRVRCGRSLQGYPFNPCLT 91
I D K FG LD G++VISTRVRCGRS++GYPFNPCLT
Sbjct: 76 PVIEDYHGGFKPEDKHPAPDFGDLKNLELGNLDPEGKYVISTRVRCGRSVEGYPFNPCLT 135
Query: 92 EAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTKEVQQKLIDDHFLFKEGDRFLQAANAC 151
+ QY EMEEKV S L L GEL G +YPLTGM KE QQ+LIDDHFLFKEGDRFLQAA
Sbjct: 136 KEQYIEMEEKVKSALETLTGELAGTYYPLTGMDKETQQQLIDDHFLFKEGDRFLQAAGGY 195
Query: 152 RFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQMGGDLGQVYRRLVSAVNDIEKRLPFSH 211
RFWPTGRGI+HND+KTFLVW NEEDHLR+ISMQ GGDLG VY+RLV+A+ ++EK+LPF+
Sbjct: 196 RFWPTGRGIFHNDDKTFLVWVNEEDHLRIISMQKGGDLGAVYKRLVTALKELEKKLPFAR 255
Query: 212 DDRLGFLTFCPTNLGTTVRASVHIKLPKLAADLSKLEEIAGRYNLQVRGTAGEHTESVGG 271
DDRLG+LTFCPTNLGTT+RASVHIKLPKL+ D +L+EI +YNLQVRGT GEHTESVGG
Sbjct: 256 DDRLGYLTFCPTNLGTTLRASVHIKLPKLSKDPPRLKEICEKYNLQVRGTHGEHTESVGG 315
Query: 272 VYDISNKRRMGLTEFEAVR 290
VYDISNKRR+GLTEFEAV+
Sbjct: 316 VYDISNKRRLGLTEFEAVK 334
Score = 64.3 bits (157), Expect = 4e-11
Identities = 25/44 (56%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 24 KLEAGFAKFQ-ATESKSLLKKYLTKEIFDALKVKKTSFGSSLLD 66
KLE AK Q A + KSLLKKYLT E+ LK KKT G +L D
Sbjct: 1 KLEEELAKLQDAEDCKSLLKKYLTPEVLKKLKDKKTKLGGTLAD 44
>gnl|CDD|215797 pfam00217, ATP-gua_Ptrans, ATP:guanido phosphotransferase,
C-terminal catalytic domain. The substrate binding site
is located in the cleft between N and C-terminal
domains, but most of the catalytic residues are found in
the larger C-terminal domain.
Length = 243
Score = 397 bits (1022), Expect = e-137
Identities = 133/225 (59%), Positives = 172/225 (76%)
Query: 65 LDGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMT 124
DG++V+S+R+R R+L+GYPF P L+ + +E+EE V S LS LEGELKG++YPLT MT
Sbjct: 2 PDGDYVLSSRIRLARNLKGYPFPPLLSREERREVEELVVSALSSLEGELKGKYYPLTDMT 61
Query: 125 KEVQQKLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQ 184
E QQ+LI+DH LF + DR L AA R WP GRGI+HN++KTFLVW NEEDHLR+ISMQ
Sbjct: 62 PEEQQQLIEDHLLFPDVDRLLTAAGMARDWPDGRGIFHNEDKTFLVWVNEEDHLRIISMQ 121
Query: 185 MGGDLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNLGTTVRASVHIKLPKLAADL 244
GGDL +VY RLV +++E++L F+ D+RLG+LT CPTNLGT +RASVHI LP L+
Sbjct: 122 KGGDLKEVYERLVRGDDELEEKLEFAFDERLGYLTSCPTNLGTGLRASVHIHLPALSKTN 181
Query: 245 SKLEEIAGRYNLQVRGTAGEHTESVGGVYDISNKRRMGLTEFEAV 289
+ EI + LQVRG GE +E+VGG+YDISN+RR+GL+E E V
Sbjct: 182 PRFLEILKKLGLQVRGIYGEGSEAVGGIYDISNQRRLGLSEEEIV 226
Score = 340 bits (875), Expect = e-115
Identities = 115/196 (58%), Positives = 149/196 (76%)
Query: 370 DPNGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGM 429
DP+G++V+S+R+R R+L+GYPF P L+ + +E+EE V S LS LEGELKG++YPLT M
Sbjct: 1 DPDGDYVLSSRIRLARNLKGYPFPPLLSREERREVEELVVSALSSLEGELKGKYYPLTDM 60
Query: 430 TKEVQQKLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISM 489
T E QQ+LI+DH LF + DR L AA R WP GRGI+HN++KTFLVW NEEDHLR+ISM
Sbjct: 61 TPEEQQQLIEDHLLFPDVDRLLTAAGMARDWPDGRGIFHNEDKTFLVWVNEEDHLRIISM 120
Query: 490 QMGGDLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNLGTTVRASVHIKLPKLAAD 549
Q GGDL +VY RLV +++E++L F+ D+RLG+LT CPTNLGT +RASVHI LP L+
Sbjct: 121 QKGGDLKEVYERLVRGDDELEEKLEFAFDERLGYLTSCPTNLGTGLRASVHIHLPALSKT 180
Query: 550 LSKLEEIAGRYNLQVR 565
+ EI + LQVR
Sbjct: 181 NPRFLEILKKLGLQVR 196
>gnl|CDD|153078 cd07931, eukaryotic_phosphagen_kinases, Phosphagen (guanidino)
kinases mostly found in eukaryotes. Phosphagen
(guanidino) kinases are enzymes that transphosphorylate
a high energy phosphoguanidino compound, like
phosphocreatine (PCr) in the case of creatine kinase
(CK) or phosphoarginine in the case of arginine kinase,
which is used as an energy-storage and -transport
metabolite, to ADP, thereby creating ATP. The substrate
binding site is located in the cleft between the N and
C-terminal domains, but most of the catalytic residues
are found in the larger C-terminal domain. In higher
eukaryotes, CK exists in tissue-specific (muscle,
brain), as well as compartment-specific (mitochondrial
and cytosolic) isoforms. They are either coupled to
glycolysis (cytosolic form) or oxidative phosphorylation
(mitochondrial form). Besides CK and AK, the most
studied members of this family are also other phosphagen
kinases with different substrate specificities, like
glycocyamine kinase (GK), lombricine kinase (LK),
taurocyamine kinase (TK) and hypotaurocyamine kinase
(HTK).
Length = 338
Score = 384 bits (989), Expect = e-130
Identities = 147/256 (57%), Positives = 187/256 (73%), Gaps = 4/256 (1%)
Query: 313 GFENPDSGVGIYAPDAEAYIVFADLFDPIIEDYHKGFKKTDKHPPKNWGDVDS-FANLDP 371
G +NPDSGVG+YA D E+Y VFA LFDP+IEDYH G+K DKH + +LDP
Sbjct: 38 GVDNPDSGVGVYAGDEESYDVFAPLFDPVIEDYHGGYKPEDKHTS-DLDPEKPGLEDLDP 96
Query: 372 NGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTK 431
+++ISTR+R R+L G+P P +T+ Q +++E + S LS LEG+LKG +Y LT MT+
Sbjct: 97 RKKYIISTRIRVARNLDGFPLPPGMTKEQRRQIERLMVSALSSLEGDLKGTYYSLTEMTE 156
Query: 432 EVQQKLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQM 491
E QQ+LIDDHFLFK+GDRFL+AA R WP GRGI+HN +KTFLVW NEEDHLR+ISMQ
Sbjct: 157 EQQQQLIDDHFLFKDGDRFLEAAGENRDWPDGRGIFHNSDKTFLVWVNEEDHLRIISMQK 216
Query: 492 GGDLGQVYRRLVSAVNDIEKRLP--FSHDDRLGFLTFCPTNLGTTVRASVHIKLPKLAAD 549
GGDL V+ RL A+ +IEK L F+HD LG++T CPTNLGT +RASVH+KLP L D
Sbjct: 217 GGDLKAVFTRLSRALTEIEKSLKEEFAHDPHLGYITSCPTNLGTGMRASVHVKLPNLIKD 276
Query: 550 LSKLEEIAGRYNLQVR 565
+ KL+ IA + LQ+R
Sbjct: 277 MDKLKAIARKLGLQIR 292
Score = 354 bits (910), Expect = e-119
Identities = 133/224 (59%), Positives = 170/224 (75%), Gaps = 2/224 (0%)
Query: 69 FVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTKEVQ 128
++ISTR+R R+L G+P P +T+ Q +++E + S LS LEG+LKG +Y LT MT+E Q
Sbjct: 100 YIISTRIRVARNLDGFPLPPGMTKEQRRQIERLMVSALSSLEGDLKGTYYSLTEMTEEQQ 159
Query: 129 QKLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQMGGD 188
Q+LIDDHFLFK+GDRFL+AA R WP GRGI+HN +KTFLVW NEEDHLR+ISMQ GGD
Sbjct: 160 QQLIDDHFLFKDGDRFLEAAGENRDWPDGRGIFHNSDKTFLVWVNEEDHLRIISMQKGGD 219
Query: 189 LGQVYRRLVSAVNDIEKRLP--FSHDDRLGFLTFCPTNLGTTVRASVHIKLPKLAADLSK 246
L V+ RL A+ +IEK L F+HD LG++T CPTNLGT +RASVH+KLP L D+ K
Sbjct: 220 LKAVFTRLSRALTEIEKSLKEEFAHDPHLGYITSCPTNLGTGMRASVHVKLPNLIKDMDK 279
Query: 247 LEEIAGRYNLQVRGTAGEHTESVGGVYDISNKRRMGLTEFEAVR 290
L+ IA + LQ+RG GEH+ES GGV DISNKRR+G +E + V+
Sbjct: 280 LKAIARKLGLQIRGIGGEHSESEGGVVDISNKRRLGFSEVQLVQ 323
Score = 43.8 bits (104), Expect = 2e-04
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 34 ATESKSLLKKYLTKEIFDALKVKKTSFGSSLLDGEFVISTRVRCGRS 80
+KSLL KYLT E+++ LK +KT+ G +L D VI + V S
Sbjct: 1 LESNKSLLAKYLTPEVYEKLKNRKTASGFTLAD---VIQSGVDNPDS 44
>gnl|CDD|153075 cd00330, phosphagen_kinases, Phosphagen (guanidino) kinases.
Phosphagen (guanidino) kinases are enzymes that
transphosphorylate a high energy phosphoguanidino
compound, like phosphocreatine (PCr) in the case of
creatine kinase (CK) or phosphoarginine in the case of
arginine kinase, which is used as an energy-storage and
-transport metabolite, to ADP, thereby creating ATP. The
substrate binding site is located in the cleft between
the N and C-terminal domains, but most of the catalytic
residues are found in the larger C-terminal domain. In
higher eukaryotes, CK exists in tissue-specific (muscle,
brain), as well as compartment-specific (mitochondrial
and cytosolic) isoforms. They are either coupled to
glycolysis (cytosolic form) or oxidative phosphorylation
(mitochondrial form). Besides CK and AK, the most
studied members of this family are also other phosphagen
kinases with different substrate specificities, like
glycocyamine kinase (GK), lombricine kinase (LK),
taurocyamine kinase (TK) and hypotaurocyamine kinase
(HTK). The majority of bacterial phosphagen kinases
appear to lack the N-terminal domain and have not been
functionally characterized.
Length = 236
Score = 348 bits (893), Expect = e-118
Identities = 114/221 (51%), Positives = 150/221 (67%)
Query: 70 VISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTKEVQQ 129
V+S+RVR GRS +G F P + + +E++ LS E L G++Y L M QQ
Sbjct: 1 VLSSRVRLGRSFEGIRFPPRYSNEEASSIEQQFEDQLSSQEIPLIGKYYLLRMMDPAEQQ 60
Query: 130 KLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQMGGDL 189
+LIDDHFLF RFLQ ANACR WP GRGI HND KTFLVW NEEDHLR+ISMQ GG L
Sbjct: 61 QLIDDHFLFPNLTRFLQTANACREWPFGRGILHNDEKTFLVWVNEEDHLRIISMQKGGQL 120
Query: 190 GQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNLGTTVRASVHIKLPKLAADLSKLEE 249
+V +R + + IE+++ F+ +++ G+LT CPTNLGT +RASVHI LP L ++++
Sbjct: 121 KEVMKRANTVDDWIEEKVDFAFNEQRGYLTSCPTNLGTGLRASVHIHLPALVKTINRIIP 180
Query: 250 IAGRYNLQVRGTAGEHTESVGGVYDISNKRRMGLTEFEAVR 290
+ LQVRGT GE TE+VGGV+DISN+ R+G +E + V
Sbjct: 181 AINQLGLQVRGTYGEGTEAVGGVFDISNQIRLGKSEQDIVE 221
Score = 296 bits (759), Expect = 1e-97
Identities = 96/190 (50%), Positives = 126/190 (66%)
Query: 376 VISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTKEVQQ 435
V+S+RVR GRS +G F P + + +E++ LS E L G++Y L M QQ
Sbjct: 1 VLSSRVRLGRSFEGIRFPPRYSNEEASSIEQQFEDQLSSQEIPLIGKYYLLRMMDPAEQQ 60
Query: 436 KLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQMGGDL 495
+LIDDHFLF RFLQ ANACR WP GRGI HND KTFLVW NEEDHLR+ISMQ GG L
Sbjct: 61 QLIDDHFLFPNLTRFLQTANACREWPFGRGILHNDEKTFLVWVNEEDHLRIISMQKGGQL 120
Query: 496 GQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNLGTTVRASVHIKLPKLAADLSKLEE 555
+V +R + + IE+++ F+ +++ G+LT CPTNLGT +RASVHI LP L ++++
Sbjct: 121 KEVMKRANTVDDWIEEKVDFAFNEQRGYLTSCPTNLGTGLRASVHIHLPALVKTINRIIP 180
Query: 556 IAGRYNLQVR 565
+ LQVR
Sbjct: 181 AINQLGLQVR 190
>gnl|CDD|153076 cd00716, creatine_kinase_like, Phosphagen (guanidino) kinases such
as creatine kinase and similar enzymes. Eukaryotic
creatine kinase-like phosphagen (guanidino) kinases are
enzymes that transphosphorylate a high energy
phosphoguanidino compound, like phosphocreatine (PCr) in
the case of creatine kinase (CK), which is used as an
energy-storage and -transport metabolite, to ADP,
thereby creating ATP. The substrate binding site is
located in the cleft between the N and C-terminal
domains, but most of the catalytic residues are found in
the larger C-terminal domain. In higher eukaryotes, CKs
are found as tissue-specific (muscle, brain), as well as
compartment-specific (mitochondrial, cytosolic, and
flagellar) isoforms. Mitochondrial and cytoplasmic CKs
are dimeric or octameric, while the flagellar isoforms
are trimers with three CD domains fused as a single
protein chain. CKs are either coupled to glycolysis
(cytosolic form) or oxidative phosphorylation
(mitochondrial form). Besides CK, one of the most
studied members of this family, this model also
represents other phosphagen kinases with different
substrate specificities, like glycocyamine kinase (GK),
lombricine kinase (LK), taurocyamine kinase (TK), and
echinoderm arginine kinase (AK).
Length = 357
Score = 295 bits (757), Expect = 1e-95
Identities = 121/267 (45%), Positives = 171/267 (64%), Gaps = 21/267 (7%)
Query: 313 GFENPDSG----VGIYAPDAEAYIVFADLFDPIIEDYHKGFKKTDKHPPKNWGDVDSF-- 366
G +NP VG A D E+Y VF DLFDP+I++ H G+K T KHP D+D
Sbjct: 45 GVDNPGHPFIKTVGCVAGDEESYEVFKDLFDPVIDERHGGYKPTAKHPT----DLDPTKL 100
Query: 367 --ANLDPNGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFY 424
DP +V+S+RVR GRS++G+ P + A+ +E+E+ L+ L+G+LKG++Y
Sbjct: 101 KGGQFDPK--YVLSSRVRTGRSIRGFCLPPHCSRAERREVEKIAVEALASLDGDLKGKYY 158
Query: 425 PLTGMTKEVQQKLIDDHFLFKEGD-RFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDH 483
PL+GMT+E QQ+LI+DHFLF + L ++ R WP RGI+HND+KTFLVW NEEDH
Sbjct: 159 PLSGMTEEEQQQLIEDHFLFDKPVSPLLLSSGMARDWPDARGIWHNDDKTFLVWVNEEDH 218
Query: 484 LRLISMQMGGDLGQVYRRLVSAVNDIEKRLP-----FSHDDRLGFLTFCPTNLGTTVRAS 538
LR+ISMQ GGD+ V+ R + ++EK + F ++ LG++ CP+NLGT +RAS
Sbjct: 219 LRVISMQKGGDMKAVFARFCRGLTEVEKLMKKKGYEFMWNEHLGYVLTCPSNLGTGLRAS 278
Query: 539 VHIKLPKLAADLSKLEEIAGRYNLQVR 565
VH+KLP L+ D + +EI + LQ R
Sbjct: 279 VHVKLPNLSKD-PRFDEILRKLRLQKR 304
Score = 285 bits (731), Expect = 9e-92
Identities = 115/245 (46%), Positives = 163/245 (66%), Gaps = 12/245 (4%)
Query: 51 DALKVKKTSFGSSLLDGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLE 110
D K+K F D ++V+S+RVR GRS++G+ P + A+ +E+E+ L+ L+
Sbjct: 96 DPTKLKGGQF-----DPKYVLSSRVRTGRSIRGFCLPPHCSRAERREVEKIAVEALASLD 150
Query: 111 GELKGQFYPLTGMTKEVQQKLIDDHFLFKEGD-RFLQAANACRFWPTGRGIYHNDNKTFL 169
G+LKG++YPL+GMT+E QQ+LI+DHFLF + L ++ R WP RGI+HND+KTFL
Sbjct: 151 GDLKGKYYPLSGMTEEEQQQLIEDHFLFDKPVSPLLLSSGMARDWPDARGIWHNDDKTFL 210
Query: 170 VWCNEEDHLRLISMQMGGDLGQVYRRLVSAVNDIEKRLP-----FSHDDRLGFLTFCPTN 224
VW NEEDHLR+ISMQ GGD+ V+ R + ++EK + F ++ LG++ CP+N
Sbjct: 211 VWVNEEDHLRVISMQKGGDMKAVFARFCRGLTEVEKLMKKKGYEFMWNEHLGYVLTCPSN 270
Query: 225 LGTTVRASVHIKLPKLAADLSKLEEIAGRYNLQVRGTAGEHTESVGGVYDISNKRRMGLT 284
LGT +RASVH+KLP L+ D + +EI + LQ RGT G T +VGG YDISN R+G +
Sbjct: 271 LGTGLRASVHVKLPNLSKD-PRFDEILRKLRLQKRGTGGVDTAAVGGTYDISNADRLGKS 329
Query: 285 EFEAV 289
E E V
Sbjct: 330 EVELV 334
>gnl|CDD|153077 cd07930, bacterial_phosphagen_kinase, Phosphagen (guanidino)
kinases found in bacteria. Phosphagen (guanidino)
kinases are enzymes that transphosphorylate a high
energy phosphoguanidino compound, such as
phosphocreatine (PCr) or phosphoarginine, which is used
as an energy-storage and -transport metabolite, to ADP,
thereby creating ATP. This subfamily is specific to
bacteria and lacks an N-terminal domain, which otherwise
forms part of the substrate binding site. Most of the
catalytic residues are found in the larger C-terminal
domain, however, which appears conserved in these
bacterial proteins. Their functions have not been
characterized.
Length = 232
Score = 158 bits (402), Expect = 5e-45
Identities = 76/218 (34%), Positives = 124/218 (56%), Gaps = 12/218 (5%)
Query: 70 VISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTKEVQQ 129
VIS+R+R R+L+GYPF L+E Q ++ EKV LS +E + + + L + +Q
Sbjct: 4 VISSRIRLARNLKGYPFPNKLSEEQAADVLEKVEKALSNIEDKDEFELLKLKDLDPLERQ 63
Query: 130 KLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQMGGDL 189
L++ H + E A N G + N+++T + NEEDHLR+ + G L
Sbjct: 64 VLVEKHLISPE-----LAEN-----KEGGAVIVNEDETVSIMINEEDHLRIQCLLPGLQL 113
Query: 190 GQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNLGTTVRASVHIKLPKLAA--DLSKL 247
+ Y R + +E++L ++ D++LG+LT CPTN+GT +RASV + LP L ++++
Sbjct: 114 EEAYERADKIDDLLEEKLDYAFDEKLGYLTACPTNVGTGLRASVMLHLPALVLTGQINRI 173
Query: 248 EEIAGRYNLQVRGTAGEHTESVGGVYDISNKRRMGLTE 285
+ L VRG GE +E++G +Y ISN+ +GL+E
Sbjct: 174 LNALSQLGLAVRGLYGEGSEALGNIYQISNQVTLGLSE 211
Score = 130 bits (329), Expect = 1e-34
Identities = 64/192 (33%), Positives = 105/192 (54%), Gaps = 12/192 (6%)
Query: 376 VISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTKEVQQ 435
VIS+R+R R+L+GYPF L+E Q ++ EKV LS +E + + + L + +Q
Sbjct: 4 VISSRIRLARNLKGYPFPNKLSEEQAADVLEKVEKALSNIEDKDEFELLKLKDLDPLERQ 63
Query: 436 KLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQMGGDL 495
L++ H + E A N G + N+++T + NEEDHLR+ + G L
Sbjct: 64 VLVEKHLISPE-----LAEN-----KEGGAVIVNEDETVSIMINEEDHLRIQCLLPGLQL 113
Query: 496 GQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNLGTTVRASVHIKLPKLAA--DLSKL 553
+ Y R + +E++L ++ D++LG+LT CPTN+GT +RASV + LP L ++++
Sbjct: 114 EEAYERADKIDDLLEEKLDYAFDEKLGYLTACPTNVGTGLRASVMLHLPALVLTGQINRI 173
Query: 554 EEIAGRYNLQVR 565
+ L VR
Sbjct: 174 LNALSQLGLAVR 185
>gnl|CDD|234894 PRK01059, PRK01059, ATP:guanido phosphotransferase; Provisional.
Length = 346
Score = 146 bits (372), Expect = 2e-39
Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 18/222 (8%)
Query: 70 VISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQF--YPLTGMTKEV 127
V+S+R+R R+L+ PF L+E + +++ E V E E G+F L +
Sbjct: 22 VLSSRIRLARNLKDIPFPNKLSEEEARDIIELVEKAFLNNEIEGFGEFELLKLKDLDPLE 81
Query: 128 QQKLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQMGG 187
++ L++ H + + + P G + N+++T + NEEDHLR+ + G
Sbjct: 82 KEVLVEKHLISPD---LAEN-------PEGGAVLLNEDETISIMINEEDHLRIQCIDPGL 131
Query: 188 DLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNLGTTVRASVHIKLPKLAADLSK- 246
L + + + +E++L ++ D++LG+LT CPTN+GT +RASV + LP L L+K
Sbjct: 132 QLEEALEKANQIDDLLEEKLDYAFDEKLGYLTSCPTNVGTGLRASVMLHLPALV--LTKR 189
Query: 247 LEEIAGRYN---LQVRGTAGEHTESVGGVYDISNKRRMGLTE 285
+ I N L VRG GE +E++G +Y ISN+ +G +E
Sbjct: 190 INRILQAINQLGLTVRGIYGEGSEALGNIYQISNQITLGKSE 231
Score = 125 bits (316), Expect = 8e-32
Identities = 56/190 (29%), Positives = 98/190 (51%), Gaps = 17/190 (8%)
Query: 359 NWGDVDSFANLDPNGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGE 418
NW D P+ + V+S+R+R R+L+ PF L+E + +++ E V E E
Sbjct: 10 NWMKGDG-----PDSDIVLSSRIRLARNLKDIPFPNKLSEEEARDIIELVEKAFLNNEIE 64
Query: 419 LKGQF--YPLTGMTKEVQQKLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLV 476
G+F L + ++ L++ H + + + P G + N+++T +
Sbjct: 65 GFGEFELLKLKDLDPLEKEVLVEKHLISPD---LAEN-------PEGGAVLLNEDETISI 114
Query: 477 WCNEEDHLRLISMQMGGDLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNLGTTVR 536
NEEDHLR+ + G L + + + +E++L ++ D++LG+LT CPTN+GT +R
Sbjct: 115 MINEEDHLRIQCIDPGLQLEEALEKANQIDDLLEEKLDYAFDEKLGYLTSCPTNVGTGLR 174
Query: 537 ASVHIKLPKL 546
ASV + LP L
Sbjct: 175 ASVMLHLPAL 184
>gnl|CDD|226387 COG3869, COG3869, Arginine kinase [Amino acid transport and
metabolism].
Length = 352
Score = 130 bits (328), Expect = 2e-33
Identities = 71/249 (28%), Positives = 129/249 (51%), Gaps = 17/249 (6%)
Query: 45 LTKEIFDALKVKKTSFGSSLLDGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSS 104
L I +A+ S G D + V+S+R+R R+L F PCL++ + +++ E +
Sbjct: 2 LPNFILEAISSWMKSDGP---DNDIVLSSRIRLARNLSVSKFPPCLSKEEKRDVVETIKD 58
Query: 105 TLSGLEGELKGQFY--PLTGMTKEVQQKLIDDHFLFKEGDRFLQAANACRFWPTGRGIYH 162
+ +E E +F PL M ++ L++ H + N G +
Sbjct: 59 QFNEIEDEGPNEFTLLPLKDMPPWQKEVLVEKHLISPH-----LIEN-----SEGGAVLL 108
Query: 163 NDNKTFLVWCNEEDHLRLISMQMGGDLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCP 222
N+++T V NEEDHLR+ + G L + + + +E++L ++ D++ G+LT CP
Sbjct: 109 NEDETLSVMINEEDHLRIQCIDPGLQLEEALEQASQIDDYLEEKLDYAFDEQFGYLTSCP 168
Query: 223 TNLGTTVRASVHIKLPKLA--ADLSKLEEIAGRYNLQVRGTAGEHTESVGGVYDISNKRR 280
TN+GT +RASV + LP L +++++ + + VRG GE +E++G ++ ISN+
Sbjct: 169 TNIGTGLRASVMLHLPALVYTKEITRILLAINQLGIVVRGIYGEGSEALGNIFQISNQCT 228
Query: 281 MGLTEFEAV 289
+G +E + V
Sbjct: 229 LGKSEEDIV 237
Score = 105 bits (264), Expect = 7e-25
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 12/181 (6%)
Query: 368 NLDPNGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFY--P 425
+ P+ + V+S+R+R R+L F PCL++ + +++ E + + +E E +F P
Sbjct: 16 SDGPDNDIVLSSRIRLARNLSVSKFPPCLSKEEKRDVVETIKDQFNEIEDEGPNEFTLLP 75
Query: 426 LTGMTKEVQQKLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLR 485
L M ++ L++ H + N G + N+++T V NEEDHLR
Sbjct: 76 LKDMPPWQKEVLVEKHLISPH-----LIEN-----SEGGAVLLNEDETLSVMINEEDHLR 125
Query: 486 LISMQMGGDLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNLGTTVRASVHIKLPK 545
+ + G L + + + +E++L ++ D++ G+LT CPTN+GT +RASV + LP
Sbjct: 126 IQCIDPGLQLEEALEQASQIDDYLEEKLDYAFDEQFGYLTSCPTNIGTGLRASVMLHLPA 185
Query: 546 L 546
L
Sbjct: 186 L 186
>gnl|CDD|202405 pfam02807, ATP-gua_PtransN, ATP:guanido phosphotransferase,
N-terminal domain. The N-terminal domain has an
all-alpha fold.
Length = 76
Score = 81.4 bits (202), Expect = 4e-19
Identities = 28/37 (75%), Positives = 32/37 (86%)
Query: 313 GFENPDSGVGIYAPDAEAYIVFADLFDPIIEDYHKGF 349
G +NPDSGVGIYA D E+Y VFADLFDP+IEDYH G+
Sbjct: 40 GVDNPDSGVGIYAGDEESYEVFADLFDPVIEDYHGGY 76
Score = 53.3 bits (129), Expect = 4e-09
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 34 ATESKSLLKKYLTKEIFDALKVKKTSFGSSLLD 66
++ KSLLKK+LT E+++ LK KKT G +L D
Sbjct: 3 LSKHKSLLKKHLTPEVYEKLKDKKTPLGGTLDD 35
>gnl|CDD|205938 pfam13765, PRY, SPRY-associated domain. SPRY and PRY domains occur
on PYRIN proteins. Their function is not known.
Length = 49
Score = 27.8 bits (63), Expect = 1.8
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 369 LDPN---GEFVIS---TRVRCGRSLQGYPFNP 394
LDPN V+S VR G + Q YP NP
Sbjct: 3 LDPNTAHPNLVLSEDLKSVRYGETRQNYPDNP 34
>gnl|CDD|226368 COG3850, NarQ, Signal transduction histidine kinase,
nitrate/nitrite-specific [Signal transduction
mechanisms].
Length = 574
Score = 29.6 bits (67), Expect = 5.4
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 184 QMGGDLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNLGTT 228
QM G+L ++Y L V + + L + RL FL L T+
Sbjct: 215 QMSGELKKLYADLEQRVEEKTRDLEQKN-QRLSFLYQSSRRLHTS 258
Score = 29.6 bits (67), Expect = 5.4
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 490 QMGGDLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNLGTT 534
QM G+L ++Y L V + + L + RL FL L T+
Sbjct: 215 QMSGELKKLYADLEQRVEEKTRDLEQKN-QRLSFLYQSSRRLHTS 258
>gnl|CDD|226697 COG4246, COG4246, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 340
Score = 29.4 bits (66), Expect = 5.8
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 326 PDAEAYIVFAD--------LFDPIIEDYHKGFKKTDKHPPKNWGDVDSFANLDPNGEFVI 377
P A A +V ++ L I+E KG + P + D +F P+G+ ++
Sbjct: 200 PLAGALVVVSEKSEDKAGNLSAAILEGPPKGVFTVKRGPDFDVTD-GAFL---PDGDLLL 255
Query: 378 STR 380
R
Sbjct: 256 LER 258
>gnl|CDD|131440 TIGR02387, rpoC1_cyan, DNA-directed RNA polymerase, gamma subunit.
The RNA polymerase gamma subunit, encoded by the rpoC1
gene, is found in cyanobacteria and corresponds to the
N-terminal region the beta' subunit, encoded by rpoC, in
other bacteria. The equivalent subunit in plastids and
chloroplasts is designated beta', while the product of
the rpoC2 gene is designated beta''.
Length = 619
Score = 29.2 bits (65), Expect = 6.9
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 90 LTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTKEVQQKLIDDHFLFKEGDRFLQAAN 149
LTE Q+ E+E+++ + S LE E + G+ E ++L+ D L + ++ + N
Sbjct: 155 LTEDQWLEIEDQIYAEDSELENE------EVVGIGAEALKQLLADLNLEEVAEQLREEIN 208
Query: 150 ACR 152
+
Sbjct: 209 GSK 211
Score = 29.2 bits (65), Expect = 6.9
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 396 LTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTKEVQQKLIDDHFLFKEGDRFLQAAN 455
LTE Q+ E+E+++ + S LE E + G+ E ++L+ D L + ++ + N
Sbjct: 155 LTEDQWLEIEDQIYAEDSELENE------EVVGIGAEALKQLLADLNLEEVAEQLREEIN 208
Query: 456 ACR 458
+
Sbjct: 209 GSK 211
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.413
Gapped
Lambda K H
0.267 0.0865 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,120,095
Number of extensions: 2884517
Number of successful extensions: 2497
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2476
Number of HSP's successfully gapped: 35
Length of query: 565
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 463
Effective length of database: 6,413,494
Effective search space: 2969447722
Effective search space used: 2969447722
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.4 bits)