RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5878
(565 letters)
>1m15_A Arginine kinase, AK; creatine kinase, phosphagen kinase, transition
state analog, adenosine triphosphate, transferas; HET:
ARG ADP; 1.20A {Limulus polyphemus} SCOP: a.83.1.1
d.128.1.2 PDB: 1m80_A 3m10_A 1bg0_A* 1p50_A* 1sd0_A*
1p52_A* 1rl9_A* 2j1q_A
Length = 357
Score = 288 bits (737), Expect = 4e-93
Identities = 196/255 (76%), Positives = 221/255 (86%)
Query: 311 RMGFENPDSGVGIYAPDAEAYIVFADLFDPIIEDYHKGFKKTDKHPPKNWGDVDSFANLD 370
+ G EN DSGVGIYAPDAE+Y F LFDPII+DYH GFK TDKHPPK WGD+++ LD
Sbjct: 55 QSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLD 114
Query: 371 PNGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMT 430
P G+F+ISTRVRCGRSLQGYPFNPCLT QYKEMEEKVSSTLS +E ELKG +YPLTGM+
Sbjct: 115 PAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMS 174
Query: 431 KEVQQKLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQ 490
K QQ+LIDDHFLFKEGDRFLQ ANACR+WPTGRGI+HND KTFLVW NEEDHLR+ISMQ
Sbjct: 175 KATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQ 234
Query: 491 MGGDLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNLGTTVRASVHIKLPKLAADL 550
GGDL VY+RLV+AV++IE +LPFSHDDR GFLTFCPTNLGTT+RASVHI+LPKLA D
Sbjct: 235 KGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDR 294
Query: 551 SKLEEIAGRYNLQVR 565
LE+IA ++NLQVR
Sbjct: 295 KVLEDIASKFNLQVR 309
Score = 262 bits (671), Expect = 4e-83
Identities = 179/237 (75%), Positives = 202/237 (85%)
Query: 53 LKVKKTSFGSSLLDGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGE 112
+ G+F+ISTRVRCGRSLQGYPFNPCLT QYKEMEEKVSSTLS +E E
Sbjct: 103 QWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDE 162
Query: 113 LKGQFYPLTGMTKEVQQKLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWC 172
LKG +YPLTGM+K QQ+LIDDHFLFKEGDRFLQ ANACR+WPTGRGI+HND KTFLVW
Sbjct: 163 LKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWV 222
Query: 173 NEEDHLRLISMQMGGDLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNLGTTVRAS 232
NEEDHLR+ISMQ GGDL VY+RLV+AV++IE +LPFSHDDR GFLTFCPTNLGTT+RAS
Sbjct: 223 NEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRAS 282
Query: 233 VHIKLPKLAADLSKLEEIAGRYNLQVRGTAGEHTESVGGVYDISNKRRMGLTEFEAV 289
VHI+LPKLA D LE+IA ++NLQVRGT GEHTES GGVYDISNKRR+GLTE++AV
Sbjct: 283 VHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAV 339
Score = 67.2 bits (163), Expect = 3e-12
Identities = 36/52 (69%), Positives = 45/52 (86%), Gaps = 1/52 (1%)
Query: 16 MVDQATLDKLEAGFAKFQ-ATESKSLLKKYLTKEIFDALKVKKTSFGSSLLD 66
MVDQATLDKLEAGF K Q A++ KSLLKK+LTK++FD++K KKT G++LLD
Sbjct: 1 MVDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLD 52
>3ju5_A Arginine kinase, AK; reciprocating mechanism, negative
cooperativity, phosphagen kinase, ATP-binding,
nucleotide-binding, transferase; HET: MSE; 1.75A
{Apostichopus japonicus} PDB: 3ju6_A*
Length = 370
Score = 282 bits (722), Expect = 1e-90
Identities = 118/260 (45%), Positives = 162/260 (62%), Gaps = 10/260 (3%)
Query: 313 GFENPDSGVGIYAPDAEAYIVFADLFDPIIEDYHKGFKKTDKHPPKNWGDVDSFANLDPN 372
G +NPD +G+ A D E Y VFADLFDP+IE+YH GFKKTD H +
Sbjct: 55 GVDNPDFHLGLLAGDEETYTVFADLFDPVIEEYHNGFKKTDNHKTDLDASKILDD--VLD 112
Query: 373 GEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTKE 432
+VIS+RVR GR+++G +P + ++ + +E+ VS L+ L +LKG++Y L M ++
Sbjct: 113 PAYVISSRVRTGRNIRGMALSPHVCRSERRAIEKMVSEALNSLAADLKGKYYSLMKMDEK 172
Query: 433 VQQKLIDDHFLF-KEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQM 491
QQ+LIDDHFLF + R + R +P GRGI+HND K FLVW NEEDH R+ISMQM
Sbjct: 173 TQQQLIDDHFLFDRPVSRHFTSGGMARDFPDGRGIWHNDKKNFLVWINEEDHTRIISMQM 232
Query: 492 GGDLGQVYRRLVSAVNDIEKRLP------FSHDDRLGFLTFCPTNLGTTVRASVHIKLPK 545
GG++ +V+ R + ++EK + F +D LGF+ CP+NLGT VR SVH KLP
Sbjct: 233 GGNMKEVFERFTRGLTEVEKHIKDKTGKEFMKNDHLGFVLTCPSNLGTGVRCSVHAKLPH 292
Query: 546 LAADLSKLEEIAGRYNLQVR 565
+A D + EEI + LQ R
Sbjct: 293 MAKD-KRFEEICTKMRLQKR 311
Score = 256 bits (654), Expect = 2e-80
Identities = 112/232 (48%), Positives = 153/232 (65%), Gaps = 8/232 (3%)
Query: 66 DGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTK 125
D +VIS+RVR GR+++G +P + ++ + +E+ VS L+ L +LKG++Y L M +
Sbjct: 112 DPAYVISSRVRTGRNIRGMALSPHVCRSERRAIEKMVSEALNSLAADLKGKYYSLMKMDE 171
Query: 126 EVQQKLIDDHFLF-KEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQ 184
+ QQ+LIDDHFLF + R + R +P GRGI+HND K FLVW NEEDH R+ISMQ
Sbjct: 172 KTQQQLIDDHFLFDRPVSRHFTSGGMARDFPDGRGIWHNDKKNFLVWINEEDHTRIISMQ 231
Query: 185 MGGDLGQVYRRLVSAVNDIEKRLP------FSHDDRLGFLTFCPTNLGTTVRASVHIKLP 238
MGG++ +V+ R + ++EK + F +D LGF+ CP+NLGT VR SVH KLP
Sbjct: 232 MGGNMKEVFERFTRGLTEVEKHIKDKTGKEFMKNDHLGFVLTCPSNLGTGVRCSVHAKLP 291
Query: 239 KLAADLSKLEEIAGRYNLQVRGTAGEHTESVGGVYDISNKRRMGLTEFEAVR 290
+A D + EEI + LQ RGT+GE TESVGGVYDISN R+G +E E V
Sbjct: 292 HMAKD-KRFEEICTKMRLQKRGTSGEFTESVGGVYDISNLDRLGSSEVEQVN 342
Score = 43.3 bits (101), Expect = 1e-04
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 35 TESKSLLKKYLTKEIFDALKVKKTSFGSSLLD 66
KSLL KYLT +++ L+ T G +L
Sbjct: 19 EGHKSLLSKYLTADMYAKLRDVATPSGYTLDR 50
>3jpz_A Lombricine kinase; mixed alpha / beta, transferase; 1.95A {Urechis
caupo} PDB: 3jq3_A*
Length = 366
Score = 270 bits (692), Expect = 4e-86
Identities = 101/259 (38%), Positives = 156/259 (60%), Gaps = 8/259 (3%)
Query: 313 GFENPDSGVGIYAPDAEAYIVFADLFDPIIEDYHKGFKKTDKHPPKNWGDVDSFANLDPN 372
+N + +G+ A D E+Y VF +LFD +I + HKGF D P + D +
Sbjct: 51 SVDNFGNCIGLIAGDEESYEVFKELFDAVINEKHKGFGPNDSQPAPDL-DASKLVGGQFD 109
Query: 373 GEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTKE 432
++V S R+R GR ++G + P T + +E+E +++ L+GL G+L G +YPL+ MT E
Sbjct: 110 EKYVKSCRIRTGRGIRGLCYPPSCTRGERREVERVITTALAGLSGDLSGTYYPLSKMTPE 169
Query: 433 VQQKLIDDHFLFKEGD-RFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQM 491
+ +LI DHFLF++ + + + R WP RGI+HN+ KTFL+W NEEDH+R+ISMQ
Sbjct: 170 QENQLIADHFLFQKPTGHLMVNSASVRDWPDARGIWHNNEKTFLIWINEEDHMRVISMQK 229
Query: 492 GGDLGQVYRRLVSAVNDIEKRLP-----FSHDDRLGFLTFCPTNLGTTVRASVHIKLPKL 546
GG++ V+ R +N I +++ + + RLG+L CP+NLGT +RASVH++L +L
Sbjct: 230 GGNVKAVFERFGRGLNAIAEQMKKNGREYMWNQRLGYLCACPSNLGTGLRASVHVQLHQL 289
Query: 547 AADLSKLEEIAGRYNLQVR 565
+ K E+I LQ R
Sbjct: 290 SKH-PKFEDIVVALQLQKR 307
Score = 242 bits (617), Expect = 4e-75
Identities = 100/237 (42%), Positives = 149/237 (62%), Gaps = 7/237 (2%)
Query: 60 FGSSLLDGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYP 119
D ++V S R+R GR ++G + P T + +E+E +++ L+GL G+L G +YP
Sbjct: 103 LVGGQFDEKYVKSCRIRTGRGIRGLCYPPSCTRGERREVERVITTALAGLSGDLSGTYYP 162
Query: 120 LTGMTKEVQQKLIDDHFLFKEGD-RFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHL 178
L+ MT E + +LI DHFLF++ + + + R WP RGI+HN+ KTFL+W NEEDH+
Sbjct: 163 LSKMTPEQENQLIADHFLFQKPTGHLMVNSASVRDWPDARGIWHNNEKTFLIWINEEDHM 222
Query: 179 RLISMQMGGDLGQVYRRLVSAVNDIEKRLP-----FSHDDRLGFLTFCPTNLGTTVRASV 233
R+ISMQ GG++ V+ R +N I +++ + + RLG+L CP+NLGT +RASV
Sbjct: 223 RVISMQKGGNVKAVFERFGRGLNAIAEQMKKNGREYMWNQRLGYLCACPSNLGTGLRASV 282
Query: 234 HIKLPKLAADLSKLEEIAGRYNLQVRGTAGEHTESVGGVYDISNKRRMGLTEFEAVR 290
H++L +L+ K E+I LQ RGT GEHT +V VYDISN R+ +E E V+
Sbjct: 283 HVQLHQLSKH-PKFEDIVVALQLQKRGTGGEHTAAVDDVYDISNAARLKKSEREFVQ 338
Score = 47.1 bits (111), Expect = 8e-06
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 23 DKLEAGFAKFQATESKSLLKKYLTKEIFDALKVKKTSFGSSLLDGEFVISTRVRCGRSLQ 82
+ +A F + ++ ++L E++ L KKT+ G ++ VI V +
Sbjct: 5 NDAKANFPDY--ANHGCVVGRHLNFEMYQRLFGKKTAHGVTVDK---VIQPSVDNFGNCI 59
Query: 83 G 83
G
Sbjct: 60 G 60
>1qh4_A Creatine kinase; cancer, cellular energy metabolism, guanidino
kinase, neurodegenerative disorders, transferase; 1.41A
{Gallus gallus} SCOP: a.83.1.1 d.128.1.2 PDB: 3b6r_A*
3drb_A* 3dre_A 1g0w_A 1i0e_A 1u6r_A* 1vrp_A* 2crk_A
Length = 380
Score = 269 bits (688), Expect = 2e-85
Identities = 117/263 (44%), Positives = 156/263 (59%), Gaps = 12/263 (4%)
Query: 313 GFENPDS----GVGIYAPDAEAYIVFADLFDPIIEDYHKGFKKTDKHPPKNWGDVDSFAN 368
G +NP VG A D E+Y VF +LFDP+IED H G+K TD+H + +
Sbjct: 59 GVDNPGHPFIMTVGCVAGDEESYEVFKELFDPVIEDRHGGYKPTDEHKT-DLNADNLQGG 117
Query: 369 LDPNGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTG 428
D + +V+S+RVR GRS++G+ P + + + +E+ L L G+LKG++Y L
Sbjct: 118 DDLDPNYVLSSRVRTGRSIRGFCLPPHCSRGERRAIEKLSVEALGSLGGDLKGKYYALRN 177
Query: 429 MTKEVQQKLIDDHFLF-KEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLI 487
MT QQ+LIDDHFLF K L A+ R WP RGI+HNDNKTFLVW NEEDHLR+I
Sbjct: 178 MTDAEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWINEEDHLRVI 237
Query: 488 SMQMGGDLGQVYRRLVSAVNDIE-----KRLPFSHDDRLGFLTFCPTNLGTTVRASVHIK 542
SMQ GG++ +V+ R + + IE K F + LG++ CP+NLGT +RA VHIK
Sbjct: 238 SMQKGGNMKEVFTRFCTGLTQIETLFKSKNYEFMWNPHLGYILTCPSNLGTGLRAGVHIK 297
Query: 543 LPKLAADLSKLEEIAGRYNLQVR 565
LP L K E+ R LQ R
Sbjct: 298 LPNLGKH-EKFGEVLKRLRLQKR 319
Score = 247 bits (631), Expect = 6e-77
Identities = 110/231 (47%), Positives = 145/231 (62%), Gaps = 7/231 (3%)
Query: 65 LDGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMT 124
LD +V+S+RVR GRS++G+ P + + + +E+ L L G+LKG++Y L MT
Sbjct: 120 LDPNYVLSSRVRTGRSIRGFCLPPHCSRGERRAIEKLSVEALGSLGGDLKGKYYALRNMT 179
Query: 125 KEVQQKLIDDHFLF-KEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISM 183
QQ+LIDDHFLF K L A+ R WP RGI+HNDNKTFLVW NEEDHLR+ISM
Sbjct: 180 DAEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWINEEDHLRVISM 239
Query: 184 QMGGDLGQVYRRLVSAVNDIE-----KRLPFSHDDRLGFLTFCPTNLGTTVRASVHIKLP 238
Q GG++ +V+ R + + IE K F + LG++ CP+NLGT +RA VHIKLP
Sbjct: 240 QKGGNMKEVFTRFCTGLTQIETLFKSKNYEFMWNPHLGYILTCPSNLGTGLRAGVHIKLP 299
Query: 239 KLAADLSKLEEIAGRYNLQVRGTAGEHTESVGGVYDISNKRRMGLTEFEAV 289
L K E+ R LQ RGT G T +VGGV+D+SN R+G +E E V
Sbjct: 300 NLGKH-EKFGEVLKRLRLQKRGTGGVDTAAVGGVFDVSNADRLGFSEVELV 349
Score = 43.7 bits (102), Expect = 1e-04
Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 24 KLEAGFAKFQATESKSLLKKYLTKEIFDALKVKKTSFGSSLLD 66
++ + + + + K LT +++ L+ ++TS G +L D
Sbjct: 14 SVDDEYPDL--SVHNNHMAKVLTLDLYKKLRDRQTSSGFTLDD 54
>3l2f_A Glycocyamine kinase beta chain; phosphagen kinase, transition state
ANA kinase, transferase; HET: ADP; 2.30A {Namalycastis
SP} PDB: 3l2e_B 3l2d_A* 3l2g_A* 3l2e_A
Length = 390
Score = 268 bits (685), Expect = 9e-85
Identities = 107/264 (40%), Positives = 159/264 (60%), Gaps = 14/264 (5%)
Query: 313 GFENPDS-----GVGIYAPDAEAYIVFADLFDPIIEDYHKGFKKTDKHPPKNWGDVDSFA 367
G +NP + G D +Y + + FD IE+ H FK +DKHP + D +
Sbjct: 71 GVDNPGNKFYGKKTGCVFGDEYSYECYKEFFDKCIEEIH-HFKPSDKHPAPDL-DHNKLV 128
Query: 368 NLDPNGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLT 427
++V S R+RCGRS++G P ++ A+ + +E+ VS L GL+G+L G++YPLT
Sbjct: 129 GGVFEDKYVKSCRIRCGRSVKGVCLPPAMSRAERRLVEKVVSDALGGLKGDLAGKYYPLT 188
Query: 428 GMTKEVQQKLIDDHFLFKEGDRFLQAANAC-RFWPTGRGIYHNDNKTFLVWCNEEDHLRL 486
M ++ Q++LI+DHFLF++ L + C R WP GRGI+HN+ K FLVW NEEDH+R+
Sbjct: 189 TMNEKDQEQLIEDHFLFEKPTGALLTTSGCARDWPDGRGIWHNNEKNFLVWINEEDHIRV 248
Query: 487 ISMQMGGDLGQVYRRLVSAVNDIEKRLP-----FSHDDRLGFLTFCPTNLGTTVRASVHI 541
ISMQ GGDL V+ R + ++E+ + H+DRLG++ CPTN+GT VRASVH+
Sbjct: 249 ISMQKGGDLKAVFSRFARGLLEVERLMKECGHGLMHNDRLGYICTCPTNMGTVVRASVHL 308
Query: 542 KLPKLAADLSKLEEIAGRYNLQVR 565
+L L + +E+ G+ L R
Sbjct: 309 RLAFLEKH-PRFDEMLGKLRLGKR 331
Score = 252 bits (645), Expect = 8e-79
Identities = 103/231 (44%), Positives = 152/231 (65%), Gaps = 7/231 (3%)
Query: 66 DGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTK 125
+ ++V S R+RCGRS++G P ++ A+ + +E+ VS L GL+G+L G++YPLT M +
Sbjct: 133 EDKYVKSCRIRCGRSVKGVCLPPAMSRAERRLVEKVVSDALGGLKGDLAGKYYPLTTMNE 192
Query: 126 EVQQKLIDDHFLFKEGDRFLQAANAC-RFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQ 184
+ Q++LI+DHFLF++ L + C R WP GRGI+HN+ K FLVW NEEDH+R+ISMQ
Sbjct: 193 KDQEQLIEDHFLFEKPTGALLTTSGCARDWPDGRGIWHNNEKNFLVWINEEDHIRVISMQ 252
Query: 185 MGGDLGQVYRRLVSAVNDIEKRLP-----FSHDDRLGFLTFCPTNLGTTVRASVHIKLPK 239
GGDL V+ R + ++E+ + H+DRLG++ CPTN+GT VRASVH++L
Sbjct: 253 KGGDLKAVFSRFARGLLEVERLMKECGHGLMHNDRLGYICTCPTNMGTVVRASVHLRLAF 312
Query: 240 LAADLSKLEEIAGRYNLQVRGTAGEHTESVGGVYDISNKRRMGLTEFEAVR 290
L + +E+ G+ L RGT GE + + YDISN R+G +E E V+
Sbjct: 313 LEKH-PRFDEMLGKLRLGKRGTGGESSLATDSTYDISNWARLGKSERELVQ 362
Score = 48.7 bits (115), Expect = 3e-06
Identities = 9/53 (16%), Positives = 19/53 (35%)
Query: 14 TKMVDQATLDKLEAGFAKFQATESKSLLKKYLTKEIFDALKVKKTSFGSSLLD 66
K +A ++ +++ LTKE+++ K T G +
Sbjct: 14 VGHSKPWESGKFKAADNFPDLSKHNNVMASQLTKELYEKYWDKVTPNGVTFDK 66
>2gl6_A Creatine kinase; non-protein kinase, ADP, structural genomics,
structural genomics consortium, SGC, transferase; HET:
ADP; 2.30A {Homo sapiens} PDB: 1crk_A 1qk1_A
Length = 392
Score = 260 bits (665), Expect = 6e-82
Identities = 107/263 (40%), Positives = 158/263 (60%), Gaps = 12/263 (4%)
Query: 313 GFENPD----SGVGIYAPDAEAYIVFADLFDPIIEDYHKGFKKTDKHPPKNWGDVDSFAN 368
G +NP VG+ A D E+Y VFADLFDP+I+ H G+ + D
Sbjct: 70 GVDNPGHPFIKTVGMVAGDEESYEVFADLFDPVIKLRHNGYDPRVMKHTTDL-DASKITQ 128
Query: 369 LDPNGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTG 428
+ +V+S+RVR GRS++G P T A+ +E+E + L GL+G+L G++Y L+
Sbjct: 129 GQFDEHYVLSSRVRTGRSIRGLSLPPACTRAERREVENVAITALEGLKGDLAGRYYKLSE 188
Query: 429 MTKEVQQKLIDDHFLF-KEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLI 487
MT++ QQ+LIDDHFLF K L A R WP RGI+HN +KTFL+W NEEDH R+I
Sbjct: 189 MTEQDQQRLIDDHFLFDKPVSPLLTCAGMARDWPDARGIWHNYDKTFLIWINEEDHTRVI 248
Query: 488 SMQMGGDLGQVYRRLVSAVNDIEKRL-----PFSHDDRLGFLTFCPTNLGTTVRASVHIK 542
SM+ GG++ +V+ R + ++E+ + F ++RLG++ CP+NLGT +RA VH++
Sbjct: 249 SMEKGGNMKRVFERFCRGLKEVERLIQERGWEFMWNERLGYILTCPSNLGTGLRAGVHVR 308
Query: 543 LPKLAADLSKLEEIAGRYNLQVR 565
+PKL+ D + +I LQ R
Sbjct: 309 IPKLSKD-PRFSKILENLRLQKR 330
Score = 240 bits (613), Expect = 3e-74
Identities = 103/230 (44%), Positives = 149/230 (64%), Gaps = 7/230 (3%)
Query: 66 DGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTK 125
D +V+S+RVR GRS++G P T A+ +E+E + L GL+G+L G++Y L+ MT+
Sbjct: 132 DEHYVLSSRVRTGRSIRGLSLPPACTRAERREVENVAITALEGLKGDLAGRYYKLSEMTE 191
Query: 126 EVQQKLIDDHFLF-KEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQ 184
+ QQ+LIDDHFLF K L A R WP RGI+HN +KTFL+W NEEDH R+ISM+
Sbjct: 192 QDQQRLIDDHFLFDKPVSPLLTCAGMARDWPDARGIWHNYDKTFLIWINEEDHTRVISME 251
Query: 185 MGGDLGQVYRRLVSAVNDIEKRL-----PFSHDDRLGFLTFCPTNLGTTVRASVHIKLPK 239
GG++ +V+ R + ++E+ + F ++RLG++ CP+NLGT +RA VH+++PK
Sbjct: 252 KGGNMKRVFERFCRGLKEVERLIQERGWEFMWNERLGYILTCPSNLGTGLRAGVHVRIPK 311
Query: 240 LAADLSKLEEIAGRYNLQVRGTAGEHTESVGGVYDISNKRRMGLTEFEAV 289
L+ D + +I LQ RGT G T +V VYDISN R+G +E E V
Sbjct: 312 LSKD-PRFSKILENLRLQKRGTGGVDTAAVADVYDISNIDRIGRSEVELV 360
Score = 49.5 bits (117), Expect = 1e-06
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 10 KPYLTKMVDQATLDKLEAGFAKFQATESKSLLKKYLTKEIFDALKVKKTSFGSSLLD 66
+ ++ +Q L A + + + + + + LT I+ L+ K T G +L
Sbjct: 11 QKVCAEVREQPRLFPPSADYPDLR--KHNNCMAECLTPAIYAKLRNKVTPNGYTLDQ 65
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 2e-10
Identities = 79/500 (15%), Positives = 145/500 (29%), Gaps = 178/500 (35%)
Query: 200 VNDIEKRLPF--SHDD-RLGFLTFCPTNL---GTTVRASVHIKLP----KLAAD--LSKL 247
++ R P SH L PT + ++ + LP AAD +
Sbjct: 1 MDAYSTR-PLTLSHGSLEHVLLV--PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 248 EEIAGRY-----NLQVRGTAGEHTESVGGVYDISNKRRMGLTEFE-----------AVRG 291
E+ G++ +L G+ + + + LTEFE
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVL----------NLCLTEFENCYLEGNDIHALAAK 107
Query: 292 TAGEHTESVGGVYDI----------SNKRRMG------FENPDSG-VGIYAP-----DAE 329
E+ ++ ++ + + F G + A + +
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 330 AYIVF---ADLFD---PIIEDYHKGFKKTDKHPPKNWGDVDSF--ANLD----------- 370
Y F DL+ ++ D K +T + D + L+
Sbjct: 168 DY--FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 371 PNGEFVISTRVRCGRSLQGYPFNPCLTE-AQYKEMEEKVSSTLSGLE-GELKGQFYPLTG 428
P+ ++++S + C P + + A Y V++ L G GEL+ TG
Sbjct: 226 PDKDYLLSIPISC-------PLI-GVIQLAHYV-----VTAKLLGFTPGELRSYLKGATG 272
Query: 429 MTKEVQ------------------QKLIDDHFLFKEGDRFLQAANACRFWPT-------- 462
++ + +K I LF G R +A P+
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAI--TVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 463 --G--------RGIYHNDNKTFLVWCN----EEDHLRLISMQMG-------G---DLGQV 498
G + + ++ N + IS+ G G L +
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE-ISLVNGAKNLVVSGPPQSLYGL 389
Query: 499 YRRL--VSAVNDIEK-RLPFSHDDR-----LGFL-TFCPTNLGTTVRASVHIKL-----P 544
L A + +++ R+PFS +R FL P H L
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFS--ERKLKFSNRFLPVASP----------FHSHLLVPASD 437
Query: 545 KLAADLSKLEEIAGRYNLQV 564
+ DL K ++Q+
Sbjct: 438 LINKDLVKNNVSFNAKDIQI 457
Score = 53.5 bits (128), Expect = 2e-07
Identities = 60/379 (15%), Positives = 112/379 (29%), Gaps = 142/379 (37%)
Query: 82 QGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTKEVQQKLIDDHFLFKEG 141
QG +Q + M G++ Y T + Q + +
Sbjct: 1624 QG---------SQEQGM---------GMD------LYK----TSKAAQDV------WNRA 1649
Query: 142 DRFLQAA------NACRFWPT----------GRGIYHNDNKTFLVWCNEEDHLRLISMQM 185
D + + P G+ I N + + +
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA--------------MIFET 1695
Query: 186 GGDLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLT-FCPTNLGTTVRASVHIKLPKLAADL 244
D ++ +N+ F + L T F T A +
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF-------TQPAL-------TLMEK 1741
Query: 245 SKLEEIAGRYNLQVRGT-AGEHTESVG---------GVYDISN-----KRRMGLTEFEAV 289
+ E++ + + T AG H S+G V I + R G+T AV
Sbjct: 1742 AAFEDLKSKGLIPADATFAG-H--SLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAV 1797
Query: 290 RGTAGEHTESVGGVYDISNKRRMGFENPDSGVGIYAPDAEAYIVFADLFDPIIEDYHKGF 349
E S G+ I NP ++ +A Y+V + +
Sbjct: 1798 --PRDELGRSNYGMIAI---------NPGRVAASFSQEALQYVV-----ERVG------- 1834
Query: 350 KKTDKHPPKNWGDVDSFANLD-PNGEFVISTRVRCG--RSLQGYPFNPCLTEAQYKEME- 405
K+T G + N + N ++V + G R+L L + ++++
Sbjct: 1835 KRT--------GWLVEIVNYNVENQQYVAA-----GDLRALD--TVTNVLNFIKLQKIDI 1879
Query: 406 EKVSSTLSGLEGELKGQFY 424
++ +LS LE E++G +
Sbjct: 1880 IELQKSLS-LE-EVEGHLF 1896
Score = 43.1 bits (101), Expect = 2e-04
Identities = 62/332 (18%), Positives = 109/332 (32%), Gaps = 123/332 (37%)
Query: 281 MGL---TEFEAVRG---TAGEHTESVGGVYDISNKRRMGFENPDS---------GVGIYA 325
MG+ +A + A H + G + I + NP + G I
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYG-FSILDIVI---NNPVNLTIHFGGEKGKRIR- 1685
Query: 326 PDAEAY--IVFADLFDPIIEDYHKGFKKTDKHPPKNWGDVDSFANLDPNG-----EFVIS 378
E Y ++F + D ++ K FK+ ++H +F G +F
Sbjct: 1686 ---ENYSAMIFETIVDGKLKTE-KIFKEINEHSTSY-----TFR--SEKGLLSATQF--- 1731
Query: 379 TRVRCGRSLQGYPFNPCL--TE-AQYKEMEEK----VSSTLSG--LEGELKGQFYP-LTG 428
T Q P L E A +++++ K +T +G L GE Y L
Sbjct: 1732 T--------Q-----PALTLMEKAAFEDLKSKGLIPADATFAGHSL-GE-----YAALAS 1772
Query: 429 MTKEVQQKL-IDD--HFLFKEGDRFLQAANACRFWPTGRGIYH----NDNKTFLVWCNEE 481
+ +V + I+ +F G +Q A GR Y N + ++E
Sbjct: 1773 LA-DV---MSIESLVEVVFYRG-MTMQ--VAVPRDELGRSNYGMIAINPGRVAAS-FSQE 1824
Query: 482 DHLRLISMQMGGDLGQVYRRLVSAVND---------------IEKRLPFSHDDRLGFLTF 526
L+ + ++G G + V VN ++ +T
Sbjct: 1825 A-LQYVVERVGKRTGWL----VEIVNYNVENQQYVAAGDLRALDT------------VTN 1867
Query: 527 CPTNLGTTVRASVHIKLPKLAADLSKLEEIAG 558
+ ++ I + +L LS LEE+ G
Sbjct: 1868 VLNFIK--LQK---IDIIELQKSLS-LEEVEG 1893
Score = 38.5 bits (89), Expect = 0.007
Identities = 73/446 (16%), Positives = 139/446 (31%), Gaps = 157/446 (35%)
Query: 6 DDFIKPYLTKMVDQATLDKLEAGFAKFQATESK-SLLKKYL-----------TKEIFDAL 53
+ F L + GFA + L+ K+L + L
Sbjct: 35 EQF----------NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL 84
Query: 54 KVKKTSFGSSLLDGE----FVIS-------TRVRCGRSLQGYPFNPCLTEAQYKEMEEKV 102
+ T F + L+G T V+ ++ Y + + ++K
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY-ITARIMAK--RPFDKKS 141
Query: 103 SSTL--SGLEGELK------GQFYPLTGMT----KEVQ------QKLIDDHFLFKEGDRF 144
+S L + EG + GQ G T +E++ L+ D L K
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQ-----GNTDDYFEELRDLYQTYHVLVGD--LIKFSAET 194
Query: 145 LQ-----AANACRFWPTGRGIYHNDNKTFLVWCNE------EDHLR--LISM------QM 185
L +A + + G I W +D+L IS Q+
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILE--------WLENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 186 ----------GGDLGQVYRRL----------VSAV-----NDIEK---------RLPF-- 209
G G++ L V+AV + E + F
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 210 ---SHDDRLGFLTFCPTNLGTTVRASVHIKLPKLA-ADLSK--LEEIAGRYNLQVRGTAG 263
++ + P+ L ++ + + P L+ ++L++ +++ + N + AG
Sbjct: 307 GVRCYE-AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP--AG 363
Query: 264 EHTESVGGVYDIS--NKRRMGLTEFEAVRGTAGEHTESVGGVYDISNKRRMGFENPDSGV 321
+ V IS N + V +G +S+ G+ R+ SG+
Sbjct: 364 KQ------VE-ISLVNGAKN----L--V--VSG-PPQSLYGL--NLTLRKAK---APSGL 402
Query: 322 GIY-APDAEAYIVFADLFDPIIEDYH 346
P +E + F++ F P+ +H
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFH 428
Score = 34.3 bits (78), Expect = 0.16
Identities = 18/154 (11%), Positives = 36/154 (23%), Gaps = 64/154 (41%)
Query: 388 QGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTKEVQQKLIDDHFLFKEG 447
QG +Q + M G++ Y T + Q + +
Sbjct: 1624 QG---------SQEQGM---------GMD------LYK----TSKAAQDV------WNRA 1649
Query: 448 DRFLQAA------NACRFWPT----------GRGIYHNDNKTFLVWCNEEDHLRLISMQM 491
D + + P G+ I N + + +
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA--------------MIFET 1695
Query: 492 GGDLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLT 525
D ++ +N+ F + L T
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 6e-07
Identities = 57/367 (15%), Positives = 110/367 (29%), Gaps = 95/367 (25%)
Query: 3 RKIDDFIKPYLTKMVDQATLDKLEAGFAKFQATESKSLLKKYLTKEIFD-ALKVKKTSFG 61
+++ DF+ T + +LD E KSLL KYL D +V T+
Sbjct: 275 KQVTDFLSAATTTHI---SLDHHSMTLTP---DEVKSLLLKYLDCRPQDLPREVLTTN-- 326
Query: 62 SSLLDGEFVISTRVRCGRSLQGYP--FNPCLTEAQYKEMEEKVSSTLSGLE-GELKGQFY 118
+S S++ ++ ++ + S+L+ LE E + F
Sbjct: 327 ------PRRLSI---IAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 119 PLTGMTKEVQQKLIDDHFLFKEGDRFLQAANACRFWPTG-----RGIYHNDNKTFLVWCN 173
L+ I L W + + +K LV
Sbjct: 377 RLSVFPPSAH---IPTILL-------------SLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 174 -EEDHLRLISMQM-----GGDLGQVYRRLVSAVNDIEKRLPFSHDDRLG------FLTFC 221
+E + + S+ + + ++R +V N + F DD + F +
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT---FDSDDLIPPYLDQYFYSHI 477
Query: 222 PTNLGTTVRASVHIKLPKLAADLSKLEEIAGRYNLQVRGTAGEHTESVGGV------Y-- 273
+L + D LE+ ++ TA + S+ Y
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQ-----KIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 274 -----DISNKRRMG-LTEFEAVRGTA---GEHTESVGGVYDISNKRRMGFENPDSGVGIY 324
D +R + + +F ++T+ + R+ D I+
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL----------RIALMAEDE--AIF 580
Query: 325 APDAEAY 331
EA+
Sbjct: 581 ---EEAH 584
Score = 41.0 bits (95), Expect = 0.001
Identities = 78/642 (12%), Positives = 160/642 (24%), Gaps = 229/642 (35%)
Query: 2 IRKIDDFIKPYLTKMVDQATLDKLEAGFAKFQATESKSLLKKYLTKEIFDALKVKKTS-- 59
+ + D K L+K +D + ++ +F L K+
Sbjct: 35 CKDVQDMPKSILSK----EEIDHI--------IMSKDAVSGTLR---LFWTLLSKQEEMV 79
Query: 60 ---FGSSL-LDGEFVIST-RVRC-GRSLQGYPFNPCLTE--------AQY----KEMEEK 101
L ++ +F++S + S+ + A+Y + K
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 102 VSSTLSGLEGELKGQFYPLTGMT---KEVQQKLIDDHFLFKEGDRFLQAANACRFWPTGR 158
+ L L + + G+ K + A + C +
Sbjct: 140 LRQALLELR---PAKNVLIDGVLGSGKTW---V---------------ALDVCLSYKVQC 178
Query: 159 GIYHNDNKTFLVW-----CNEED----HLRLISMQMGGDLGQV---YRRLVSAVNDIEKR 206
D K F W CN + L+ + Q+ + + ++ I+
Sbjct: 179 ---KMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 207 L-------PFSH-----DD----RL--GFLTFCPTNLGTTVRASVHIKLPKLAADLSKLE 248
L P+ + + + F C L TT V D
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQV--------TD----- 279
Query: 249 EIAGRYNLQVRGTAGEHTESVGGVYDISNKRRMGLTEFEAVRGTAGEHTESVGGVYDISN 308
+ H M LT E +S+ +
Sbjct: 280 --------FLSAATTTHISLD--------HHSMTLTPDE---------VKSL-----LLK 309
Query: 309 KRRMGFEN-PDSGVGIYAPDAEAYIVFADLFDPIIEDYHKGFKKTDKHPPKNWGDVD--- 364
++ P + P + + A+ + NW V+
Sbjct: 310 YLDCRPQDLPREVLTT-NPRRLS--IIAESI------------RDGLATWDNWKHVNCDK 354
Query: 365 -------SFANLDPNG------EFV-------ISTRVRCGRSLQGYPFNPCLTEAQYKEM 404
S L+P I T + L F+ ++ +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-----LSLIWFDVIKSDVM-VVV 408
Query: 405 EEKVSSTLSGLEGELKGQFYPLTGMT----------KEVQQKLID----------DHFLF 444
+ +L +E + K + + + + ++D D +
Sbjct: 409 NKLHKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 445 KEGDRF--------LQAANACRFWPTGRGIYHN----DNK---TFLVWCNEEDHLRLISM 489
D++ L+ R ++ + + K W L +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ- 525
Query: 490 QMGGDLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNL 531
L + Y+ + + +RL + L FL NL
Sbjct: 526 ----QL-KFYKPYICDNDPKYERLV---NAILDFLPKIEENL 559
Score = 36.4 bits (83), Expect = 0.029
Identities = 65/515 (12%), Positives = 138/515 (26%), Gaps = 156/515 (30%)
Query: 97 EMEEKVSSTLSGLEGELKGQF--YPLTGMTKEVQQKLIDDHFLFKEGDRFLQAANACRFW 154
E + + LS E F + M K + K DH + D
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVSGT------- 64
Query: 155 PTGRGIYHNDNKTFLVWCNEEDHLRLISMQMGGDLGQVYRRLVSAVND------------ 202
L W ++ + L Y+ L+S +
Sbjct: 65 ------------LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 203 IEKRLPFSHDDRLGFLTFCPTNLGTTVRASVHIKLPKLAADLSKLEEIAGRYNLQVRGTA 262
IE+R +D+++ F N+ R ++KL + L E+ N+ + G
Sbjct: 113 IEQRDRLYNDNQV----FAKYNV---SRLQPYLKLRQ------ALLELRPAKNVLIDGVL 159
Query: 263 G---------------EHTESVGGVY--DISNKRRMG---------LTEFEAVRGTAGEH 296
G + ++ ++ N L + + + +H
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 297 TESVG-GVYDISNKRRMGFENPDSGVGIYAPDAEAYIVFADLFDP-IIE----------- 343
+ ++ ++ I + R ++ Y +V ++ +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKP-----Y---ENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 344 -------DYHKGFKKTD---KHPPKNWGDVDS------FANLDPNGE---------FVIS 378
D+ T H + + + P +S
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 379 TRVRCGRSLQGYP--FNPCLTEAQYKEMEEKVSSTLSGLE-GELKGQFYPLTGMTKEVQQ 435
S++ ++ ++ + S+L+ LE E + F L+
Sbjct: 332 I---IAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH- 386
Query: 436 KLIDDHFLFKEGDRFLQAANACRFWPTG-----RGIYHNDNKTFLVWCN-EEDHLRLISM 489
I L W + + +K LV +E + + S+
Sbjct: 387 --IPTILL-------------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 490 QM-----GGDLGQVYRRLVSAVNDIEKRLPFSHDD 519
+ + ++R +V N + F DD
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKT---FDSDD 463
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.51
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 318 DSGVGIYAPD-AEAYIVFADLFDPIIE 343
+ + +YA D A A + A +E
Sbjct: 26 QASLKLYADDSAPALAIKAT-----ME 47
Score = 30.7 bits (68), Expect = 0.62
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 19/44 (43%)
Query: 18 DQATLDKLEAGFAKFQATESKSLLKKYLTKEIFD---ALKVKKT 58
++ L KL+A LK Y D AL +K T
Sbjct: 18 EKQALKKLQAS------------LKLYAD----DSAPALAIKAT 45
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding,
tripartite motif (TRIM) protein, SPRY systemic lupus
erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB:
2vol_B* 2iwg_B*
Length = 188
Score = 28.3 bits (64), Expect = 5.1
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 369 LDPN---GEFVIS---TRVRCGRSLQGYPFNP 394
LD N +IS +VR G + Q N
Sbjct: 13 LDRNTANSWLIISKDRRQVRMGDTHQNVSDNK 44
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD,
antiparallel coil, motor protein, DSH; NMR
{Chlamydomonas reinhardtii}
Length = 155
Score = 28.0 bits (63), Expect = 5.9
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 3 RKIDDFIKPYLTKMVDQATLDKLEAGFAKFQATESK-SLLKKYLTKEIFDALKVKKTS 59
R +DD+ + +++ LD L F K ++ + F ++K S
Sbjct: 66 RMVDDYWEASKKMLMEFDFLDSLR-KFDKDHIPPEVIVKIRPFAQDPEFQPKVIEKQS 122
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll
beta-sandwich fold, unknown function; 2.52A {Homo
sapiens} SCOP: b.29.1.22
Length = 201
Score = 27.6 bits (62), Expect = 8.3
Identities = 6/32 (18%), Positives = 8/32 (25%), Gaps = 6/32 (18%)
Query: 369 LDPN---GEFVIS---TRVRCGRSLQGYPFNP 394
D + +IS R G Q
Sbjct: 14 FDVDTANNYLIISEDLRSFRSGDLSQNRKEQA 45
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton,
actin-binding inflammatory response, metal-binding,
signaling protein; 1.35A {Homo sapiens}
Length = 191
Score = 27.5 bits (62), Expect = 9.5
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 6/32 (18%)
Query: 369 LDP---NGEFVIS---TRVRCGRSLQGYPFNP 394
LD + S VR G + P P
Sbjct: 17 LDAETAYPNLIFSDDLKSVRLGNKWERLPDGP 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.413
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,821,856
Number of extensions: 548105
Number of successful extensions: 1142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1104
Number of HSP's successfully gapped: 42
Length of query: 565
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 466
Effective length of database: 3,937,614
Effective search space: 1834928124
Effective search space used: 1834928124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.1 bits)