RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5878
(565 letters)
>d1m15a2 d.128.1.2 (A:96-357) Arginine kinase, C-terminal domain
{Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Length = 262
Score = 312 bits (801), Expect = e-104
Identities = 179/224 (79%), Positives = 201/224 (89%)
Query: 66 DGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTK 125
G+F+ISTRVRCGRSLQGYPFNPCLT QYKEMEEKVSSTLS +E ELKG +YPLTGM+K
Sbjct: 21 AGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSK 80
Query: 126 EVQQKLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQM 185
QQ+LIDDHFLFKEGDRFLQ ANACR+WPTGRGI+HND KTFLVW NEEDHLR+ISMQ
Sbjct: 81 ATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQK 140
Query: 186 GGDLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNLGTTVRASVHIKLPKLAADLS 245
GGDL VY+RLV+AV++IE +LPFSHDDR GFLTFCPTNLGTT+RASVHI+LPKLA D
Sbjct: 141 GGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRK 200
Query: 246 KLEEIAGRYNLQVRGTAGEHTESVGGVYDISNKRRMGLTEFEAV 289
LE+IA ++NLQVRGT GEHTES GGVYDISNKRR+GLTE++AV
Sbjct: 201 VLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAV 244
Score = 298 bits (763), Expect = 1e-98
Identities = 167/214 (78%), Positives = 189/214 (88%)
Query: 352 TDKHPPKNWGDVDSFANLDPNGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSST 411
TDKHPPK WGD+++ LDP G+F+ISTRVRCGRSLQGYPFNPCLT QYKEMEEKVSST
Sbjct: 1 TDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSST 60
Query: 412 LSGLEGELKGQFYPLTGMTKEVQQKLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDN 471
LS +E ELKG +YPLTGM+K QQ+LIDDHFLFKEGDRFLQ ANACR+WPTGRGI+HND
Sbjct: 61 LSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDA 120
Query: 472 KTFLVWCNEEDHLRLISMQMGGDLGQVYRRLVSAVNDIEKRLPFSHDDRLGFLTFCPTNL 531
KTFLVW NEEDHLR+ISMQ GGDL VY+RLV+AV++IE +LPFSHDDR GFLTFCPTNL
Sbjct: 121 KTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNL 180
Query: 532 GTTVRASVHIKLPKLAADLSKLEEIAGRYNLQVR 565
GTT+RASVHI+LPKLA D LE+IA ++NLQVR
Sbjct: 181 GTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVR 214
>d1qh4a2 d.128.1.2 (A:103-381) Creatine kinase, C-terminal domain
{Chicken (Gallus gallus), brain-type [TaxId: 9031]}
Length = 279
Score = 294 bits (753), Expect = 8e-97
Identities = 110/232 (47%), Positives = 146/232 (62%), Gaps = 7/232 (3%)
Query: 65 LDGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMT 124
LD +V+S+RVR GRS++G+ P + + + +E+ L L G+LKG++Y L MT
Sbjct: 19 LDPNYVLSSRVRTGRSIRGFCLPPHCSRGERRAIEKLSVEALGSLGGDLKGKYYALRNMT 78
Query: 125 KEVQQKLIDDHFLF-KEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISM 183
QQ+LIDDHFLF K L A+ R WP RGI+HNDNKTFLVW NEEDHLR+ISM
Sbjct: 79 DAEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWINEEDHLRVISM 138
Query: 184 QMGGDLGQVYRRLVSAVNDIE-----KRLPFSHDDRLGFLTFCPTNLGTTVRASVHIKLP 238
Q GG++ +V+ R + + IE K F + LG++ CP+NLGT +RA VHIKLP
Sbjct: 139 QKGGNMKEVFTRFCTGLTQIETLFKSKNYEFMWNPHLGYILTCPSNLGTGLRAGVHIKLP 198
Query: 239 KLAADLSKLEEIAGRYNLQVRGTAGEHTESVGGVYDISNKRRMGLTEFEAVR 290
L K E+ R LQ RGT G T +VGGV+D+SN R+G +E E V+
Sbjct: 199 NLGKH-EKFGEVLKRLRLQKRGTGGVDTAAVGGVFDVSNADRLGFSEVELVQ 249
Score = 257 bits (657), Expect = 1e-82
Identities = 100/221 (45%), Positives = 134/221 (60%), Gaps = 10/221 (4%)
Query: 352 TDKHPPK-NWGDVDSFANLDPNGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSS 410
TD+H N ++ +LDPN +V+S+RVR GRS++G+ P + + + +E+
Sbjct: 1 TDEHKTDLNADNLQGGDDLDPN--YVLSSRVRTGRSIRGFCLPPHCSRGERRAIEKLSVE 58
Query: 411 TLSGLEGELKGQFYPLTGMTKEVQQKLIDDHFLF-KEGDRFLQAANACRFWPTGRGIYHN 469
L L G+LKG++Y L MT QQ+LIDDHFLF K L A+ R WP RGI+HN
Sbjct: 59 ALGSLGGDLKGKYYALRNMTDAEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHN 118
Query: 470 DNKTFLVWCNEEDHLRLISMQMGGDLGQVYRRLVSAVNDIE-----KRLPFSHDDRLGFL 524
DNKTFLVW NEEDHLR+ISMQ GG++ +V+ R + + IE K F + LG++
Sbjct: 119 DNKTFLVWINEEDHLRVISMQKGGNMKEVFTRFCTGLTQIETLFKSKNYEFMWNPHLGYI 178
Query: 525 TFCPTNLGTTVRASVHIKLPKLAADLSKLEEIAGRYNLQVR 565
CP+NLGT +RA VHIKLP L K E+ R LQ R
Sbjct: 179 LTCPSNLGTGLRAGVHIKLPNLGKH-EKFGEVLKRLRLQKR 218
>d1qk1a2 d.128.1.2 (A:103-379) Creatine kinase, C-terminal domain
{Human (Homo sapiens), mitochondria [TaxId: 9606]}
Length = 277
Score = 290 bits (743), Expect = 3e-95
Identities = 108/231 (46%), Positives = 150/231 (64%), Gaps = 7/231 (3%)
Query: 65 LDGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMT 124
D +V+S+RVR GRS++G P T A+ +E+E V LSGL+G+L G++Y L+ MT
Sbjct: 14 FDERYVLSSRVRTGRSIRGLSLPPACTRAERREVERVVVDALSGLKGDLAGRYYRLSEMT 73
Query: 125 KEVQQKLIDDHFLF-KEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISM 183
+ QQ+LIDDHFLF K L AA R WP RGI+HN+ K+FL+W NEEDH R+ISM
Sbjct: 74 EAEQQQLIDDHFLFDKPVSPLLTAAGMARDWPDARGIWHNNEKSFLIWVNEEDHTRVISM 133
Query: 184 QMGGDLGQVYRRLVSAVNDIE-----KRLPFSHDDRLGFLTFCPTNLGTTVRASVHIKLP 238
+ GG++ +V+ R + ++E + F ++RLG++ CP+NLGT +RA VHIKLP
Sbjct: 134 EKGGNMKRVFERFCRGLKEVERLIQERGWEFMWNERLGYILTCPSNLGTGLRAGVHIKLP 193
Query: 239 KLAADLSKLEEIAGRYNLQVRGTAGEHTESVGGVYDISNKRRMGLTEFEAV 289
L+ D S+ +I LQ RGT G T + GGV+DISN R+G +E E V
Sbjct: 194 LLSKD-SRFPKILENLRLQKRGTGGVDTAATGGVFDISNLDRLGKSEVELV 243
Score = 247 bits (631), Expect = 1e-78
Identities = 92/210 (43%), Positives = 132/210 (62%), Gaps = 7/210 (3%)
Query: 362 DVDSFANLDPNGEFVISTRVRCGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKG 421
D + + +V+S+RVR GRS++G P T A+ +E+E V LSGL+G+L G
Sbjct: 5 DASKIRSGYFDERYVLSSRVRTGRSIRGLSLPPACTRAERREVERVVVDALSGLKGDLAG 64
Query: 422 QFYPLTGMTKEVQQKLIDDHFLF-KEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNE 480
++Y L+ MT+ QQ+LIDDHFLF K L AA R WP RGI+HN+ K+FL+W NE
Sbjct: 65 RYYRLSEMTEAEQQQLIDDHFLFDKPVSPLLTAAGMARDWPDARGIWHNNEKSFLIWVNE 124
Query: 481 EDHLRLISMQMGGDLGQVYRRLVSAVNDIE-----KRLPFSHDDRLGFLTFCPTNLGTTV 535
EDH R+ISM+ GG++ +V+ R + ++E + F ++RLG++ CP+NLGT +
Sbjct: 125 EDHTRVISMEKGGNMKRVFERFCRGLKEVERLIQERGWEFMWNERLGYILTCPSNLGTGL 184
Query: 536 RASVHIKLPKLAADLSKLEEIAGRYNLQVR 565
RA VHIKLP L+ D S+ +I LQ R
Sbjct: 185 RAGVHIKLPLLSKD-SRFPKILENLRLQKR 213
>d1qk1a1 a.83.1.1 (A:1-102) Creatine kinase, N-domain {Human (Homo
sapiens), mitochondria [TaxId: 9606]}
Length = 102
Score = 74.4 bits (183), Expect = 4e-17
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 313 GFENP----DSGVGIYAPDAEAYIVFADLFDPIIEDYHKGFK-KTDKH 355
G +NP VG+ A D E Y VFADLFDP+I++ H G+ +T KH
Sbjct: 55 GVDNPGHPFIKTVGMVAGDEETYEVFADLFDPVIQERHNGYDPRTMKH 102
Score = 44.0 bits (104), Expect = 2e-06
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 35 TESKSLLKKYLTKEIFDALKVKKTSFGSSLLD 66
+ + + +LT ++ L K T G +L
Sbjct: 19 RKHNNCMASHLTPAVYARLCDKTTPTGWTLDQ 50
>d1m15a1 a.83.1.1 (A:2-95) Arginine kinase, N-domain {Horseshoe crab
(Limulus polyphemus) [TaxId: 6850]}
Length = 94
Score = 74.0 bits (182), Expect = 6e-17
Identities = 29/38 (76%), Positives = 31/38 (81%)
Query: 313 GFENPDSGVGIYAPDAEAYIVFADLFDPIIEDYHKGFK 350
G EN DSGVGIYAPDAE+Y F LFDPII+DYH GFK
Sbjct: 56 GVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFK 93
Score = 73.2 bits (180), Expect = 1e-16
Identities = 35/51 (68%), Positives = 44/51 (86%), Gaps = 1/51 (1%)
Query: 17 VDQATLDKLEAGFAKFQ-ATESKSLLKKYLTKEIFDALKVKKTSFGSSLLD 66
VDQATLDKLEAGF K Q A++ KSLLKK+LTK++FD++K KKT G++LLD
Sbjct: 1 VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLD 51
>d1qh4a1 a.83.1.1 (A:2-102) Creatine kinase, N-domain {Chicken
(Gallus gallus), brain-type [TaxId: 9031]}
Length = 101
Score = 69.4 bits (170), Expect = 3e-15
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 313 GFENP----DSGVGIYAPDAEAYIVFADLFDPIIEDYHKGFK 350
G +NP VG A D E+Y VF +LFDP+IED H G+K
Sbjct: 59 GVDNPGHPFIMTVGCVAGDEESYEVFKELFDPVIEDRHGGYK 100
Score = 43.6 bits (103), Expect = 4e-06
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 35 TESKSLLKKYLTKEIFDALKVKKTSFGSSLLD 66
+ + + K LT +++ L+ ++TS G +L D
Sbjct: 23 SVHNNHMAKVLTLDLYKKLRDRQTSSGFTLDD 54
>d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB
{Thermotoga maritima [TaxId: 2336]}
Length = 228
Score = 31.7 bits (71), Expect = 0.18
Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 5/134 (3%)
Query: 58 TSFGSSLLDGEFVISTRVRCGR-SLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQ 116
T D + V ++R G + + E + EE++ + GE Q
Sbjct: 54 TRILEFYKDLKKVYWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIFSFVGEYD-Q 112
Query: 117 FYPLTGMTKEVQQKLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEED 176
P K ++L L +EG + + + +F V +
Sbjct: 113 VPPAYSAKKYKGERLYK---LAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGT 169
Query: 177 HLRLISMQMGGDLG 190
++R + M +G LG
Sbjct: 170 YIRSLCMDIGYKLG 183
Score = 30.5 bits (68), Expect = 0.47
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 4/114 (3%)
Query: 383 CGRSLQGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGQFYPLTGMTKEVQQKLIDDHF 442
+ + E + EE++ + GE Q P K ++L
Sbjct: 74 GLITETFDITGEVVEERECNVTEEEIREAIFSFVGEYD-QVPPAYSAKKYKGERLYK--- 129
Query: 443 LFKEGDRFLQAANACRFWPTGRGIYHNDNKTFLVWCNEEDHLRLISMQMGGDLG 496
L +EG + + + +F V + ++R + M +G LG
Sbjct: 130 LAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYKLG 183
>d1no7a_ e.48.1.1 (A:) Major capsid protein VP5 {Herpes simplex
virus 1 [TaxId: 10298]}
Length = 562
Score = 28.2 bits (63), Expect = 2.8
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 164 DNKTFLVWCNEEDHLRLISMQMGGDLG----QVYRRLVSAVNDIEK 205
+N + N+ + + +GGDL VYR LV+ V + +
Sbjct: 174 NNTRCAAFVNDYSLVSYVVTYLGGDLPEECMAVYRDLVAHVEALAQ 219
Score = 28.2 bits (63), Expect = 2.8
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 470 DNKTFLVWCNEEDHLRLISMQMGGDLG----QVYRRLVSAVNDIEK 511
+N + N+ + + +GGDL VYR LV+ V + +
Sbjct: 174 NNTRCAAFVNDYSLVSYVVTYLGGDLPEECMAVYRDLVAHVEALAQ 219
>d1vkra_ c.44.2.1 (A:) PTS system mannitol-specific EIICBA component
{Escherichia coli [TaxId: 562]}
Length = 97
Score = 25.5 bits (56), Expect = 6.4
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 38 KSLLKKYLTKEIFDALKVKKTSFGSSLLDGEFVISTRVRCGRSLQGYP------FNPCLT 91
+L+K + + V ++ + D + VI+ R R+++ P L
Sbjct: 21 AGVLRKKIQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLTNFLD 80
Query: 92 EAQYKEMEEKV 102
Y + E++
Sbjct: 81 SGLYTSLTERL 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.413
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,142,536
Number of extensions: 103277
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 21
Length of query: 565
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 475
Effective length of database: 1,171,896
Effective search space: 556650600
Effective search space used: 556650600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)