BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy588
(903 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MZK|A Chain A, Nmr Structure Of Kinase-Interacting Fha Domain Of Kinase
Associated Protein Phosphatase, Kapp In Arabidopsis
Length = 139
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 23 LENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFY--LQDTKSSNG 80
+ +T++ VK+GR V+PS+ +S HA I + + KF L D S NG
Sbjct: 24 VNSTSSSKLPVKLGR------VSPSDLALKDSEVSGKHAQITWNSTKFKWELVDMGSLNG 77
Query: 81 TFVNNQRLSKTNEESA----PHELCSGDVVQFG 109
T VN+ +S + S P EL S D++ G
Sbjct: 78 TLVNSHSISHPDLGSRKWGNPVELASDDIITLG 110
>pdb|2KKL|A Chain A, Solution Nmr Structure Of Fha Domain Of Mb1858 From
Mycobacterium Bovis. Northeast Structural Genomics
Consortium Target Mbr243c (24-155)
Length = 140
Score = 36.2 bits (82), Expect = 0.076, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 21 LILENTANKNAAVKIGRCIARAKVAPSNGIF-DCKVLSRNHALIWYYNGKFYLQDTKSSN 79
L+++ N + + + I A P + IF D +SR HA N +F + D S N
Sbjct: 35 LVVKRGPNAGSRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLENNEFNVVDVGSLN 94
Query: 80 GTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
GT+VN + + L +GD VQ G
Sbjct: 95 GTYVNREPVDSA-------VLANGDEVQIG 117
>pdb|2KFU|A Chain A, Pknb-Phosphorylated Rv1827
Length = 162
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 2 AGTAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIF-DCKVLSRNH 60
AGT P L+++ N + + + I A P + IF D +SR H
Sbjct: 39 AGTESAVSGVEGLPPGSALLVVKRGPNAGSRFLLDQAITSAGRHPDSDIFLDDVTVSRRH 98
Query: 61 ALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
A N +F + D S NGT+VN + + L +GD VQ G
Sbjct: 99 AEFRLENNEFNVVDVGSLNGTYVNREPVDSA-------VLANGDEVQIG 140
>pdb|2KB4|A Chain A, Nmr Structure Of The Unphosphorylated Form Of Odhi, Odhi
Length = 143
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 3 GTAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIF-DCKVLSRNHA 61
GTA + + P L+++ N A + + A P + IF D +SR HA
Sbjct: 31 GTAPASTGAENLPAGSALLVVKRGPNAGARFLLDQPTTTAGRHPESDIFLDDVTVSRRHA 90
Query: 62 LIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
G+F + D S NGT+VN E + +GD +Q G
Sbjct: 91 EFRINEGEFEVVDVGSLNGTYVN-------REPRNAQVMQTGDEIQIG 131
>pdb|2XT9|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 115
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 15 PFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIF-DCKVLSRNHALIWYYNGKFYLQ 73
P L+++ N + + + A P + IF D +SR HA G+F +
Sbjct: 8 PSGSALLVVKRGPNAGSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLEGGEFQVV 67
Query: 74 DTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
D S NGT+VN + + L +GD VQ G
Sbjct: 68 DVGSLNGTYVNREPVDSA-------VLANGDEVQIG 96
>pdb|2KB3|A Chain A, Nmr Structure Of The Phosphorylated Form Of Odhi, Podhi
Length = 143
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 3 GTAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIF-DCKVLSRNHA 61
GTA + + P L+++ N A + + A P + IF D +SR HA
Sbjct: 31 GTAPASTGAENLPAGSALLVVKRGPNAGARFLLDQPTTTAGRHPESDIFLDDVTVSRRHA 90
Query: 62 LIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
G+F + D S NGT+VN E + +GD +Q G
Sbjct: 91 EFRINEGEFEVVDVGSLNGTYVN-------REPRNAQVMQTGDEIQIG 131
>pdb|3O31|A Chain A, E81q Mutant Of Mtnas In Complex With A Reaction
Intermediate
pdb|3O31|B Chain B, E81q Mutant Of Mtnas In Complex With A Reaction
Intermediate
Length = 296
Score = 33.9 bits (76), Expect = 0.47, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 390 YFDDVHQILTQFDEYFLRFNESESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNR 449
Y+D + +I ++ + F+E ++SG+ + D ++ E H + ++ S + I++
Sbjct: 5 YWDKIKRIASRLEGMNYHFDEMDTSGVMPLLD------EIEEIAHDSTIDFESAKHILDD 58
Query: 450 NEEQLAF-LEQSKYLHLDKIGGLELQLEKLKQTYNSD 485
E A L + Y++L G++LQ+EK ++ SD
Sbjct: 59 AEMNHALSLIRKFYVNL----GMKLQMEKAQEVIESD 91
>pdb|3FPG|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPG|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPH|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPH|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPJ|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
pdb|3FPJ|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
Length = 298
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 390 YFDDVHQILTQFDEYFLRFNESESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNR 449
Y+D + +I ++ + F+E ++SG+ + D ++ E H + ++ S + I++
Sbjct: 6 YWDKIKRIASRLEGMNYHFDEMDTSGVMPLLD------EIEEIAHDSTIDFESAKHILDD 59
Query: 450 NEEQLAF-LEQSKYLHLDKIGGLELQLEKLKQTYNSD 485
E A L + Y++L G++LQ+EK ++ SD
Sbjct: 60 AEMNHALSLIRKFYVNL----GMKLQMEKAQEVIESD 92
>pdb|2CSW|A Chain A, Solution Structure Of The Fha Domain Of Human Ubiquitin
Ligase Protein Rnf8
Length = 145
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 55 VLSRNHALIWYY-NGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGV 110
++SRNH ++ G++ + D KS NG ++N RL E + + GD +Q GV
Sbjct: 58 MISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARL----EPLRVYSIHQGDYIQLGV 110
>pdb|3FPE|A Chain A, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPE|B Chain B, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPF|A Chain A, Crystal Structure Of Mtnas In Complex With Mta And Tna
pdb|3FPF|B Chain B, Crystal Structure Of Mtnas In Complex With Mta And Tna
Length = 298
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 390 YFDDVHQILTQFDEYFLRFNESESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNR 449
Y+D + +I ++ + F+E ++SG+ + D ++ E H + ++ S + I++
Sbjct: 6 YWDKIKRIASRLEGMNYHFDEMDTSGVMPLLD------EIEEIAHDSTIDFESAKHILDD 59
Query: 450 NEEQLAF-LEQSKYLHLDKIGGLELQLEKLKQTYNSD 485
E A L + Y++L G++L++EK ++ SD
Sbjct: 60 AEMNHALSLIRKFYVNL----GMKLEMEKAQEVIESD 92
>pdb|1UHT|A Chain A, Solution Structure Of The Fha Domain Of Arabidopsis
Thaliana Hypothetical Protein
Length = 118
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 31 AAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSK 90
+ +++GR + ++A I D + S H I +G + +QD SSNGT +N+ L
Sbjct: 33 STIRVGRIVRGNEIA----IKDAGI-STKHLRIESDSGNWVIQDLGSSNGTLLNSNALDP 87
Query: 91 TNEESAPHELCSGDVVQFG 109
E S L GDV++ G
Sbjct: 88 --ETSV--NLGDGDVIKLG 102
>pdb|2PIE|A Chain A, Crystal Structure Of The Fha Domain Of Rnf8 In Complex
With Its Optimal Phosphopeptide
Length = 138
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 55 VLSRNHALIWYY-NGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGV 110
++SRNH ++ G++ + D KS NG ++N RL E + + GD +Q GV
Sbjct: 50 MISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARL----EPLRVYSIHQGDYIQLGV 102
>pdb|3KH1|A Chain A, Crystal Structure Of Predicted Metal-Dependent
Phosphohydrolase (Zp_00055740.2) From Magnetospirillum
Magnetotacticum Ms-1 At 1.37 A Resolution
pdb|3KH1|B Chain B, Crystal Structure Of Predicted Metal-Dependent
Phosphohydrolase (Zp_00055740.2) From Magnetospirillum
Magnetotacticum Ms-1 At 1.37 A Resolution
Length = 200
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 136 DGKEAKASPTSMLISSMPLEELYQLNTCIQEALQRENM---LKNKLSKLQHIVIDLKKAA 192
D +E + + L +P ++ + + QE RE + L +LQ ++ + +
Sbjct: 95 DKEERERKAAARLFGLLPPDQAAEYSALWQEYEARETADARFADALDRLQPLLHNFETEG 154
Query: 193 DVSWK----ALIQEDRLLSRVEFLESQLAAYSKSFTDDKLR 229
+WK + D+LL R+E +L AY+++ D+ +R
Sbjct: 155 G-TWKPHGVTRAKVDKLLPRIEAGSKRLGAYARALVDEAVR 194
>pdb|3W0K|A Chain A, Crystal Structure Of A Glycoside Hydrolase
pdb|3W0K|B Chain B, Crystal Structure Of A Glycoside Hydrolase
Length = 330
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 353 DKLKNYYMNFHIIKEKMTNIK-NELGLETKVDQNILVKYFDDVHQILTQFDEYFLRFNES 411
D L+ YY + +++K N+ E G K ++ +++F+DV + +F+ + +N
Sbjct: 235 DTLREYYKPWRDLQQKGVNVHIGEFGCFNKTSNDVAIRWFEDVLSLYKEFEWGYSLWNFK 294
Query: 412 ESSGL 416
G+
Sbjct: 295 GPFGI 299
>pdb|2FEZ|A Chain A, Mycobacterium Tuberculosis Embr
pdb|2FF4|A Chain A, Mycobacterium Tuberculosis Embr In Complex With Low
Affinity Phosphopeptide
pdb|2FF4|B Chain B, Mycobacterium Tuberculosis Embr In Complex With Low
Affinity Phosphopeptide
Length = 388
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 29 KNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRL 88
+ AA +IGR + ++ + D +SR+HA+I + + D +SSNG V ++R+
Sbjct: 304 QAAATRIGR------LHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERI 357
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,337,816
Number of Sequences: 62578
Number of extensions: 897611
Number of successful extensions: 2460
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 2425
Number of HSP's gapped (non-prelim): 87
length of query: 903
length of database: 14,973,337
effective HSP length: 108
effective length of query: 795
effective length of database: 8,214,913
effective search space: 6530855835
effective search space used: 6530855835
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)