Query psy588
Match_columns 903
No_of_seqs 304 out of 1571
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 20:25:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00498 FHA: FHA domain; Int 99.6 5.5E-16 1.2E-20 128.1 8.6 67 33-109 1-68 (68)
2 cd00060 FHA Forkhead associate 99.4 7.5E-12 1.6E-16 107.8 12.3 81 16-110 11-93 (102)
3 PLN02927 antheraxanthin epoxid 99.3 3.7E-12 8E-17 147.8 11.6 104 2-111 531-637 (668)
4 TIGR03354 VI_FHA type VI secre 99.3 5E-12 1.1E-16 139.0 11.8 91 11-117 9-103 (396)
5 COG1716 FOG: FHA domain [Signa 99.3 3.7E-12 8E-17 122.6 9.0 71 31-113 89-159 (191)
6 smart00240 FHA Forkhead associ 99.1 1.6E-10 3.6E-15 90.6 5.5 50 33-88 1-52 (52)
7 COG3456 Predicted component of 99.0 1.5E-09 3.3E-14 120.1 8.6 90 11-116 11-103 (430)
8 KOG1882|consensus 98.5 1.1E-07 2.4E-12 99.8 6.6 74 31-113 194-280 (293)
9 KOG1881|consensus 98.5 1.8E-07 3.9E-12 108.9 7.1 75 31-115 177-262 (793)
10 KOG0245|consensus 98.3 2.9E-05 6.3E-10 93.7 20.2 72 32-113 478-551 (1221)
11 KOG1880|consensus 97.7 3.6E-05 7.8E-10 83.4 4.0 77 31-116 38-116 (337)
12 TIGR02500 type_III_yscD type I 97.2 0.00095 2.1E-08 74.4 8.3 89 9-116 3-94 (410)
13 KOG0615|consensus 96.8 0.0016 3.5E-08 73.7 5.2 74 30-114 63-151 (475)
14 KOG4673|consensus 96.6 0.52 1.1E-05 56.7 23.9 77 402-484 843-922 (961)
15 PRK03918 chromosome segregatio 96.4 2.9 6.2E-05 50.4 28.9 12 389-400 432-443 (880)
16 KOG1892|consensus 96.0 0.013 2.9E-07 71.3 6.8 90 12-116 364-454 (1629)
17 PF09726 Macoilin: Transmembra 94.8 1.4 3.1E-05 53.4 18.6 150 155-318 425-580 (697)
18 KOG0241|consensus 94.3 2.1 4.6E-05 53.4 18.1 69 32-113 468-537 (1714)
19 TIGR01843 type_I_hlyD type I s 94.3 9.8 0.00021 41.4 24.0 19 98-116 57-75 (423)
20 PRK10698 phage shock protein P 94.1 5.2 0.00011 42.2 18.6 125 160-310 15-147 (222)
21 PRK11637 AmiB activator; Provi 93.9 11 0.00025 42.5 22.1 8 156-163 48-55 (428)
22 KOG0995|consensus 93.9 5.1 0.00011 47.8 19.8 88 203-294 238-326 (581)
23 KOG0979|consensus 93.8 5.2 0.00011 50.3 20.4 139 151-297 170-311 (1072)
24 KOG4643|consensus 93.8 4 8.7E-05 51.3 19.3 88 251-341 477-566 (1195)
25 TIGR00606 rad50 rad50. This fa 93.6 9.9 0.00022 48.9 23.4 61 417-482 984-1044(1311)
26 TIGR02169 SMC_prok_A chromosom 93.6 16 0.00034 45.1 24.1 10 80-89 109-118 (1164)
27 PF08317 Spc7: Spc7 kinetochor 93.4 8.7 0.00019 42.3 19.6 28 318-345 273-300 (325)
28 COG1842 PspA Phage shock prote 93.3 9.8 0.00021 40.6 19.1 73 229-301 58-138 (225)
29 KOG0933|consensus 93.1 8.7 0.00019 48.6 20.7 37 263-299 823-859 (1174)
30 PF04012 PspA_IM30: PspA/IM30 93.1 8 0.00017 39.7 17.8 118 161-304 15-140 (221)
31 KOG0980|consensus 93.0 15 0.00032 46.1 22.1 60 245-304 428-494 (980)
32 PRK03918 chromosome segregatio 92.8 25 0.00054 42.7 23.9 34 155-188 152-188 (880)
33 KOG0996|consensus 92.6 33 0.00071 44.4 24.6 20 203-222 830-849 (1293)
34 KOG2293|consensus 92.5 0.29 6.3E-06 57.2 7.1 77 30-116 447-530 (547)
35 PF07888 CALCOCO1: Calcium bin 92.4 30 0.00065 41.5 23.1 42 202-243 215-257 (546)
36 TIGR02977 phageshock_pspA phag 92.3 11 0.00024 39.3 17.7 74 231-304 60-141 (219)
37 TIGR02168 SMC_prok_B chromosom 92.0 37 0.00081 41.6 24.6 20 655-674 1034-1053(1179)
38 PF06785 UPF0242: Uncharacteri 91.5 15 0.00034 41.7 18.4 144 171-327 70-221 (401)
39 KOG0804|consensus 91.2 6.5 0.00014 45.9 15.7 91 233-329 347-443 (493)
40 KOG0161|consensus 91.1 24 0.00052 47.7 22.4 44 70-116 714-757 (1930)
41 COG1196 Smc Chromosome segrega 90.5 42 0.00091 43.0 23.4 36 156-191 675-710 (1163)
42 PF10473 CENP-F_leu_zip: Leuci 90.5 21 0.00046 36.0 18.3 84 202-305 19-102 (140)
43 TIGR01663 PNK-3'Pase polynucle 90.3 0.76 1.6E-05 54.0 7.6 75 19-111 25-101 (526)
44 TIGR00606 rad50 rad50. This fa 90.2 64 0.0014 42.0 24.8 74 228-301 392-465 (1311)
45 PF10211 Ax_dynein_light: Axon 89.9 22 0.00048 36.8 16.9 124 153-299 31-157 (189)
46 PRK02224 chromosome segregatio 89.7 28 0.0006 42.6 20.2 8 31-38 25-32 (880)
47 PF00261 Tropomyosin: Tropomyo 89.7 20 0.00043 37.8 16.8 33 164-196 80-112 (237)
48 COG1196 Smc Chromosome segrega 89.6 57 0.0012 41.9 23.4 25 508-534 1053-1077(1163)
49 KOG4643|consensus 89.5 61 0.0013 41.6 22.6 166 157-329 424-600 (1195)
50 KOG0161|consensus 89.5 57 0.0012 44.4 23.8 35 604-638 1332-1366(1930)
51 KOG0971|consensus 89.2 61 0.0013 41.3 22.1 86 198-284 330-439 (1243)
52 PHA02562 46 endonuclease subun 89.0 49 0.0011 38.0 23.1 41 228-272 239-279 (562)
53 TIGR01000 bacteriocin_acc bact 88.8 49 0.0011 37.9 23.2 19 98-116 73-91 (457)
54 PF15066 CAGE1: Cancer-associa 88.8 17 0.00036 42.9 16.4 65 226-301 365-429 (527)
55 PRK11637 AmiB activator; Provi 88.7 49 0.0011 37.6 25.1 15 499-513 379-393 (428)
56 PF08317 Spc7: Spc7 kinetochor 88.6 35 0.00077 37.7 18.4 106 226-334 152-264 (325)
57 KOG1029|consensus 88.4 25 0.00055 43.8 18.2 18 440-457 696-713 (1118)
58 PF07888 CALCOCO1: Calcium bin 87.8 19 0.0004 43.2 16.5 32 427-461 300-331 (546)
59 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.6 29 0.00062 33.8 15.4 95 231-338 25-122 (132)
60 COG4372 Uncharacterized protei 87.6 17 0.00037 42.2 15.4 64 245-308 106-169 (499)
61 PRK02224 chromosome segregatio 87.6 79 0.0017 38.8 24.8 19 688-706 728-746 (880)
62 KOG4807|consensus 86.9 70 0.0015 37.5 20.7 128 188-328 335-470 (593)
63 PF09726 Macoilin: Transmembra 86.7 33 0.00072 42.1 18.2 74 202-284 441-517 (697)
64 KOG0976|consensus 86.2 95 0.0021 39.3 21.1 61 267-327 314-385 (1265)
65 PRK04863 mukB cell division pr 86.1 1.1E+02 0.0024 40.9 23.4 76 198-276 433-527 (1486)
66 PF15070 GOLGA2L5: Putative go 85.8 35 0.00076 41.4 17.6 129 164-305 16-182 (617)
67 PF12325 TMF_TATA_bd: TATA ele 85.6 34 0.00073 33.6 14.3 47 280-326 65-111 (120)
68 PF04111 APG6: Autophagy prote 85.3 9.4 0.0002 42.3 11.8 54 246-299 48-101 (314)
69 PF04156 IncA: IncA protein; 85.2 32 0.00068 34.5 14.5 20 262-281 130-149 (191)
70 PF02841 GBP_C: Guanylate-bind 85.2 62 0.0013 35.2 19.1 95 210-305 133-233 (297)
71 KOG0996|consensus 84.9 1.4E+02 0.003 39.1 22.9 96 203-298 408-515 (1293)
72 PF15070 GOLGA2L5: Putative go 84.9 1E+02 0.0022 37.6 22.4 64 156-221 37-108 (617)
73 KOG1029|consensus 84.9 1.1E+02 0.0025 38.5 21.0 127 156-301 328-455 (1118)
74 PF05700 BCAS2: Breast carcino 84.4 56 0.0012 34.4 16.4 87 193-290 131-217 (221)
75 KOG1853|consensus 84.3 75 0.0016 35.5 19.3 81 245-335 105-185 (333)
76 PF12718 Tropomyosin_1: Tropom 83.8 50 0.0011 33.0 16.4 63 227-293 77-139 (143)
77 smart00787 Spc7 Spc7 kinetocho 83.7 81 0.0017 35.3 20.5 90 242-344 205-294 (312)
78 TIGR01843 type_I_hlyD type I s 83.5 74 0.0016 34.8 17.5 49 252-300 186-234 (423)
79 KOG0250|consensus 82.8 1.6E+02 0.0035 38.2 24.4 59 532-590 657-715 (1074)
80 TIGR03007 pepcterm_ChnLen poly 82.7 22 0.00049 40.5 13.8 26 202-227 249-274 (498)
81 PF10473 CENP-F_leu_zip: Leuci 82.7 19 0.00041 36.3 11.6 15 269-283 45-59 (140)
82 KOG0982|consensus 81.7 1E+02 0.0022 36.6 18.1 146 174-328 220-374 (502)
83 KOG4807|consensus 81.7 46 0.001 38.9 15.4 150 203-368 373-562 (593)
84 PF12325 TMF_TATA_bd: TATA ele 81.5 15 0.00032 36.0 10.2 70 262-331 16-85 (120)
85 PF10186 Atg14: UV radiation r 81.1 68 0.0015 33.6 15.6 70 229-298 26-99 (302)
86 KOG0980|consensus 80.9 1.8E+02 0.0038 37.3 23.7 36 409-444 671-706 (980)
87 PF15556 Zwint: ZW10 interacto 80.9 89 0.0019 33.9 17.8 113 224-338 53-172 (252)
88 PF15066 CAGE1: Cancer-associa 80.6 1.3E+02 0.0029 35.9 18.7 73 228-304 402-484 (527)
89 PF12128 DUF3584: Protein of u 80.5 1.9E+02 0.0042 37.6 23.2 29 606-634 983-1011(1201)
90 PF13851 GAS: Growth-arrest sp 80.3 74 0.0016 33.4 15.4 78 224-309 63-140 (201)
91 KOG0994|consensus 80.2 1.5E+02 0.0033 39.0 20.0 70 231-300 1567-1636(1758)
92 TIGR02680 conserved hypothetic 80.0 87 0.0019 41.2 19.0 10 804-813 1149-1159(1353)
93 KOG0978|consensus 79.8 1.5E+02 0.0032 37.0 19.6 116 187-305 408-525 (698)
94 KOG0976|consensus 79.6 1.2E+02 0.0027 38.4 18.7 50 260-309 422-471 (1265)
95 KOG0978|consensus 79.5 1.3E+02 0.0028 37.5 19.0 102 198-301 515-619 (698)
96 PF10146 zf-C4H2: Zinc finger- 79.2 71 0.0015 34.5 15.1 69 227-299 36-104 (230)
97 PF04912 Dynamitin: Dynamitin 79.1 31 0.00068 38.9 13.1 71 167-239 207-277 (388)
98 KOG2129|consensus 78.5 1.4E+02 0.003 35.4 17.9 38 203-242 161-198 (552)
99 PRK09039 hypothetical protein; 78.1 1.3E+02 0.0027 34.0 20.2 44 266-309 134-177 (343)
100 COG4942 Membrane-bound metallo 77.8 1.5E+02 0.0033 34.9 20.2 38 314-351 199-236 (420)
101 PF09755 DUF2046: Uncharacteri 77.5 1.3E+02 0.0029 34.1 23.0 145 173-329 45-200 (310)
102 PF09730 BicD: Microtubule-ass 77.2 1E+02 0.0022 38.4 17.4 64 146-220 256-320 (717)
103 PF10481 CENP-F_N: Cenp-F N-te 76.9 70 0.0015 35.9 14.4 120 203-338 14-133 (307)
104 TIGR01005 eps_transp_fam exopo 76.4 1.1E+02 0.0024 37.2 17.4 27 273-299 342-368 (754)
105 PRK04778 septation ring format 76.1 1.8E+02 0.0039 34.8 22.5 128 174-301 217-366 (569)
106 PF10168 Nup88: Nuclear pore c 75.8 36 0.00078 41.9 13.3 12 366-377 705-716 (717)
107 PF10498 IFT57: Intra-flagella 75.6 80 0.0017 36.1 15.1 99 228-326 246-347 (359)
108 COG1579 Zn-ribbon protein, pos 75.3 1.3E+02 0.0029 32.9 20.3 50 252-301 93-142 (239)
109 PF05667 DUF812: Protein of un 75.2 1.4E+02 0.003 36.4 17.6 16 204-219 339-354 (594)
110 KOG2129|consensus 75.2 97 0.0021 36.6 15.5 19 203-221 204-222 (552)
111 KOG1265|consensus 74.2 1.3E+02 0.0028 38.6 17.1 110 164-304 1051-1160(1189)
112 PF05010 TACC: Transforming ac 74.1 1.3E+02 0.0028 32.2 16.5 56 224-279 45-100 (207)
113 PF14662 CCDC155: Coiled-coil 73.9 49 0.0011 35.2 11.9 80 247-340 35-114 (193)
114 PF04508 Pox_A_type_inc: Viral 72.9 3.6 7.8E-05 30.3 2.5 21 202-222 3-23 (23)
115 PF12128 DUF3584: Protein of u 72.7 3E+02 0.0066 35.9 22.1 17 229-245 326-342 (1201)
116 KOG0250|consensus 72.1 88 0.0019 40.4 15.4 131 156-301 303-433 (1074)
117 KOG0994|consensus 72.0 3.4E+02 0.0074 36.1 21.0 105 227-331 1623-1741(1758)
118 KOG4674|consensus 70.8 4.2E+02 0.009 36.6 22.9 137 204-340 976-1125(1822)
119 PRK10884 SH3 domain-containing 70.8 52 0.0011 34.9 11.4 71 202-302 88-158 (206)
120 PRK10884 SH3 domain-containing 70.4 21 0.00045 37.7 8.5 8 100-107 50-57 (206)
121 PRK04863 mukB cell division pr 70.1 4E+02 0.0086 36.1 25.1 93 203-298 317-412 (1486)
122 TIGR03185 DNA_S_dndD DNA sulfu 70.0 1.1E+02 0.0023 36.9 15.2 53 250-302 393-447 (650)
123 KOG0972|consensus 69.5 59 0.0013 36.8 11.9 109 214-326 212-324 (384)
124 TIGR01069 mutS2 MutS2 family p 69.5 76 0.0016 39.5 14.1 54 245-298 512-565 (771)
125 PF15254 CCDC14: Coiled-coil d 69.5 1.3E+02 0.0029 37.8 15.7 56 196-251 389-448 (861)
126 KOG4593|consensus 68.6 3.1E+02 0.0068 34.3 23.2 97 204-305 105-201 (716)
127 PF11559 ADIP: Afadin- and alp 68.5 1.2E+02 0.0027 29.7 14.7 27 193-219 38-64 (151)
128 KOG0977|consensus 67.7 2.9E+02 0.0063 33.7 20.3 169 155-336 42-219 (546)
129 PF03915 AIP3: Actin interacti 67.3 2.3E+02 0.005 33.4 16.5 80 172-265 216-295 (424)
130 PF09731 Mitofilin: Mitochondr 66.8 1.7E+02 0.0037 34.5 15.7 17 203-219 254-270 (582)
131 PF04111 APG6: Autophagy prote 66.7 85 0.0019 35.0 12.6 21 227-247 13-33 (314)
132 PF10168 Nup88: Nuclear pore c 65.8 2E+02 0.0043 35.8 16.5 28 276-303 639-666 (717)
133 PHA02562 46 endonuclease subun 65.5 2.6E+02 0.0057 32.3 24.2 15 459-473 496-512 (562)
134 PF15290 Syntaphilin: Golgi-lo 65.2 36 0.00078 38.1 9.2 89 262-372 75-164 (305)
135 KOG0249|consensus 65.1 1.1E+02 0.0023 38.4 13.6 67 260-326 172-242 (916)
136 PF10498 IFT57: Intra-flagella 64.5 1.8E+02 0.0039 33.4 14.8 101 200-304 191-294 (359)
137 PRK00409 recombination and DNA 64.3 1.1E+02 0.0023 38.3 13.9 43 248-290 520-562 (782)
138 PLN03188 kinesin-12 family pro 64.3 4.4E+02 0.0096 35.2 19.3 51 251-301 1077-1132(1320)
139 PF14992 TMCO5: TMCO5 family 64.1 1E+02 0.0023 34.5 12.5 93 232-327 65-171 (280)
140 PF00038 Filament: Intermediat 63.5 2.2E+02 0.0047 30.7 24.1 74 237-310 173-250 (312)
141 TIGR03017 EpsF chain length de 63.4 1.8E+02 0.0039 32.7 14.5 44 203-248 257-300 (444)
142 TIGR01005 eps_transp_fam exopo 63.3 2.1E+02 0.0046 34.8 16.0 19 203-221 204-222 (754)
143 KOG2072|consensus 63.0 4.3E+02 0.0094 34.0 19.3 21 312-332 668-688 (988)
144 PRK15367 type III secretion sy 62.5 27 0.00059 40.4 8.0 88 7-116 5-92 (395)
145 TIGR03185 DNA_S_dndD DNA sulfu 62.2 88 0.0019 37.6 12.5 21 543-563 502-522 (650)
146 PF12718 Tropomyosin_1: Tropom 62.1 1.8E+02 0.0038 29.2 15.5 71 228-299 40-110 (143)
147 KOG0977|consensus 61.4 2.2E+02 0.0048 34.6 15.3 106 222-327 237-369 (546)
148 KOG0239|consensus 60.9 1.9E+02 0.0041 35.8 15.0 11 235-245 208-218 (670)
149 PF10212 TTKRSYEDQ: Predicted 60.5 1.9E+02 0.004 35.0 14.4 71 231-305 421-491 (518)
150 PF05622 HOOK: HOOK protein; 60.4 2.9 6.2E-05 50.3 0.0 88 156-244 254-346 (713)
151 PF07798 DUF1640: Protein of u 59.8 2.1E+02 0.0045 29.2 13.3 56 276-331 73-137 (177)
152 smart00787 Spc7 Spc7 kinetocho 59.3 3E+02 0.0066 31.0 22.7 106 227-335 148-260 (312)
153 COG4026 Uncharacterized protei 59.3 1E+02 0.0022 34.0 11.0 71 239-310 134-204 (290)
154 COG5025 Transcription factor o 58.8 11 0.00023 45.7 4.2 64 52-117 123-188 (610)
155 KOG1962|consensus 58.5 1.3E+02 0.0028 32.6 11.6 53 252-304 155-207 (216)
156 PF07111 HCR: Alpha helical co 58.4 4.8E+02 0.01 32.9 22.4 57 422-481 370-427 (739)
157 PF13851 GAS: Growth-arrest sp 58.0 2.5E+02 0.0054 29.6 20.2 99 208-316 28-126 (201)
158 KOG4603|consensus 57.2 1.9E+02 0.0041 30.9 12.2 78 210-296 103-183 (201)
159 PF10186 Atg14: UV radiation r 56.4 2.6E+02 0.0056 29.3 15.5 40 259-298 67-106 (302)
160 PF07106 TBPIP: Tat binding pr 56.1 1.8E+02 0.0039 29.1 11.7 73 205-294 91-163 (169)
161 KOG0971|consensus 56.1 5.9E+02 0.013 33.3 19.9 101 156-272 232-335 (1243)
162 KOG0964|consensus 56.0 5.7E+02 0.012 33.6 17.8 154 176-331 237-435 (1200)
163 PF15619 Lebercilin: Ciliary p 55.6 2.7E+02 0.006 29.3 21.8 54 227-284 58-111 (194)
164 KOG0804|consensus 55.5 2E+02 0.0042 34.5 13.2 50 247-296 353-402 (493)
165 PF11932 DUF3450: Protein of u 55.4 2.4E+02 0.0052 30.0 13.1 58 244-301 38-95 (251)
166 KOG4403|consensus 54.9 2.9E+02 0.0062 33.1 14.3 53 246-298 271-324 (575)
167 COG5185 HEC1 Protein involved 54.3 1.5E+02 0.0032 35.7 12.0 126 203-332 274-400 (622)
168 PF09403 FadA: Adhesion protei 54.3 2.4E+02 0.0051 28.3 11.9 80 204-304 24-103 (126)
169 KOG0999|consensus 54.0 5.2E+02 0.011 32.1 17.0 92 178-285 621-713 (772)
170 TIGR02680 conserved hypothetic 53.9 4.2E+02 0.0092 35.2 17.3 20 15-38 14-33 (1353)
171 PF10211 Ax_dynein_light: Axon 53.6 1.5E+02 0.0032 30.9 10.9 41 257-297 122-162 (189)
172 PF05529 Bap31: B-cell recepto 53.2 66 0.0014 32.7 8.3 34 259-292 158-191 (192)
173 PF00261 Tropomyosin: Tropomyo 52.5 3.1E+02 0.0068 29.1 21.9 42 259-300 117-158 (237)
174 PF00769 ERM: Ezrin/radixin/mo 52.3 3.4E+02 0.0074 29.4 14.2 101 228-331 10-113 (246)
175 TIGR03319 YmdA_YtgF conserved 51.9 3.2E+02 0.0069 32.7 14.5 42 422-463 282-323 (514)
176 KOG1853|consensus 51.8 2.6E+02 0.0057 31.4 12.8 95 227-335 24-119 (333)
177 PF11932 DUF3450: Protein of u 51.7 2.5E+02 0.0054 29.9 12.5 76 247-322 27-102 (251)
178 PRK09841 cryptic autophosphory 51.5 5.1E+02 0.011 31.9 16.6 19 203-221 277-295 (726)
179 PF08700 Vps51: Vps51/Vps67; 51.3 1.7E+02 0.0038 25.7 9.7 67 221-287 17-83 (87)
180 PF05667 DUF812: Protein of un 51.3 5.5E+02 0.012 31.5 21.4 14 337-350 525-538 (594)
181 KOG0240|consensus 50.9 4.8E+02 0.01 32.2 15.6 248 57-345 207-494 (607)
182 KOG4674|consensus 50.8 8.8E+02 0.019 33.8 22.2 129 160-301 645-777 (1822)
183 KOG4196|consensus 50.7 2.5E+02 0.0055 28.6 11.4 89 202-305 27-117 (135)
184 PF06160 EzrA: Septation ring 50.3 5.3E+02 0.011 31.0 18.3 101 203-309 139-245 (560)
185 PRK03598 putative efflux pump 49.7 2.7E+02 0.0058 30.4 12.6 19 98-116 57-75 (331)
186 COG1579 Zn-ribbon protein, pos 49.5 4E+02 0.0086 29.4 19.9 49 261-309 95-143 (239)
187 PF15294 Leu_zip: Leucine zipp 49.4 3.2E+02 0.007 30.7 13.2 125 203-331 142-277 (278)
188 PF04340 DUF484: Protein of un 49.4 28 0.00061 36.2 5.1 69 391-459 8-82 (225)
189 PF12761 End3: Actin cytoskele 49.2 47 0.001 35.3 6.6 98 169-295 96-193 (195)
190 KOG0243|consensus 48.8 1.8E+02 0.0038 37.8 12.4 19 545-563 724-742 (1041)
191 PF09304 Cortex-I_coil: Cortex 48.4 2.6E+02 0.0057 27.6 10.9 67 258-324 12-79 (107)
192 KOG1899|consensus 48.3 4.9E+02 0.011 32.6 15.2 119 175-298 138-260 (861)
193 PF15233 SYCE1: Synaptonemal c 48.2 3.2E+02 0.0069 27.9 11.8 111 203-329 9-134 (134)
194 KOG0992|consensus 48.2 6.1E+02 0.013 31.1 18.5 56 245-301 208-263 (613)
195 PRK12704 phosphodiesterase; Pr 47.9 3.7E+02 0.008 32.3 14.3 95 358-459 219-325 (520)
196 PRK10929 putative mechanosensi 46.7 8.4E+02 0.018 32.3 23.2 126 205-334 178-313 (1109)
197 PRK12704 phosphodiesterase; Pr 46.2 4.4E+02 0.0096 31.6 14.6 40 412-453 254-306 (520)
198 KOG0288|consensus 46.1 1.2E+02 0.0027 35.7 9.7 57 253-309 4-60 (459)
199 TIGR00634 recN DNA repair prot 46.0 5.9E+02 0.013 30.4 19.4 32 160-191 173-204 (563)
200 PRK09039 hypothetical protein; 45.9 5E+02 0.011 29.5 20.1 43 259-301 113-155 (343)
201 PF13514 AAA_27: AAA domain 45.4 8.1E+02 0.017 31.8 18.7 161 155-321 808-978 (1111)
202 KOG0742|consensus 45.1 6.5E+02 0.014 30.6 20.3 121 200-344 154-274 (630)
203 TIGR03007 pepcterm_ChnLen poly 44.9 5.4E+02 0.012 29.7 14.7 26 280-305 251-276 (498)
204 PRK00409 recombination and DNA 44.8 2.1E+02 0.0045 35.8 12.1 17 227-243 517-533 (782)
205 KOG0018|consensus 44.7 8.9E+02 0.019 32.1 19.1 53 199-253 316-379 (1141)
206 PRK15422 septal ring assembly 44.4 30 0.00065 32.3 3.8 63 606-675 9-78 (79)
207 COG0419 SbcC ATPase involved i 44.1 7.7E+02 0.017 31.2 23.6 46 281-326 693-738 (908)
208 PF11802 CENP-K: Centromere-as 44.0 3.6E+02 0.0077 30.3 12.4 74 204-295 56-129 (268)
209 PF10234 Cluap1: Clusterin-ass 43.9 5.1E+02 0.011 29.0 19.7 50 237-286 158-207 (267)
210 PF07926 TPR_MLP1_2: TPR/MLP1/ 43.9 3.2E+02 0.0069 26.7 16.3 30 280-309 95-124 (132)
211 PF15456 Uds1: Up-regulated Du 43.5 1.6E+02 0.0036 29.1 9.0 39 185-223 5-45 (124)
212 TIGR01069 mutS2 MutS2 family p 43.1 2.4E+02 0.0053 35.2 12.3 18 227-244 512-529 (771)
213 PRK11519 tyrosine kinase; Prov 42.5 7.4E+02 0.016 30.6 17.8 19 203-221 277-295 (719)
214 smart00502 BBC B-Box C-termina 42.3 2.6E+02 0.0057 25.2 11.9 37 262-298 14-50 (127)
215 PF02183 HALZ: Homeobox associ 42.3 79 0.0017 26.4 5.6 31 267-297 3-33 (45)
216 PF01496 V_ATPase_I: V-type AT 42.0 8 0.00017 46.9 -0.2 22 203-224 34-55 (759)
217 PF14073 Cep57_CLD: Centrosome 41.9 4.6E+02 0.0099 27.9 13.2 31 271-301 122-152 (178)
218 PF06409 NPIP: Nuclear pore co 41.8 1.5E+02 0.0032 32.8 9.0 63 243-305 119-184 (265)
219 PF00038 Filament: Intermediat 41.8 4.8E+02 0.01 28.1 22.6 79 249-327 210-289 (312)
220 PF07200 Mod_r: Modifier of ru 41.5 3.5E+02 0.0076 26.4 12.3 40 262-301 55-94 (150)
221 KOG0963|consensus 41.4 8E+02 0.017 30.6 21.9 37 258-294 238-274 (629)
222 PF10146 zf-C4H2: Zinc finger- 41.0 4.5E+02 0.0098 28.6 12.5 73 224-297 16-88 (230)
223 PF06785 UPF0242: Uncharacteri 40.7 5.5E+02 0.012 30.0 13.4 23 358-380 201-225 (401)
224 PF09744 Jnk-SapK_ap_N: JNK_SA 40.6 4.3E+02 0.0094 27.3 13.9 28 274-301 87-114 (158)
225 PF13094 CENP-Q: CENP-Q, a CEN 40.5 1.5E+02 0.0032 29.6 8.3 62 203-298 23-84 (160)
226 KOG2412|consensus 40.4 3.2E+02 0.007 33.5 12.1 30 602-631 521-552 (591)
227 PF07106 TBPIP: Tat binding pr 40.3 1.3E+02 0.0028 30.2 7.9 22 313-334 115-136 (169)
228 KOG3091|consensus 40.2 3.6E+02 0.0078 32.6 12.4 41 192-238 403-443 (508)
229 TIGR03752 conj_TIGR03752 integ 39.7 2.7E+02 0.0058 33.5 11.3 37 262-298 73-109 (472)
230 PF11559 ADIP: Afadin- and alp 39.6 3.8E+02 0.0083 26.3 15.5 39 266-304 98-136 (151)
231 KOG4603|consensus 39.2 5.2E+02 0.011 27.8 12.2 69 264-332 118-199 (201)
232 KOG0999|consensus 39.1 8.6E+02 0.019 30.3 17.3 50 186-244 29-78 (772)
233 PF12777 MT: Microtubule-bindi 38.8 1.3E+02 0.0028 33.6 8.4 52 250-301 223-274 (344)
234 KOG3156|consensus 38.3 2.1E+02 0.0045 31.3 9.3 31 275-305 115-145 (220)
235 COG1340 Uncharacterized archae 38.3 6.5E+02 0.014 28.7 19.1 163 178-343 109-282 (294)
236 PF01479 S4: S4 domain; Inter 38.0 27 0.0006 27.7 2.3 23 79-106 26-48 (48)
237 PRK12705 hypothetical protein; 37.9 8.1E+02 0.018 29.7 19.7 99 355-458 204-312 (508)
238 PF04849 HAP1_N: HAP1 N-termin 37.9 6.7E+02 0.015 28.7 20.3 90 203-301 163-252 (306)
239 PF05911 DUF869: Plant protein 37.2 9.9E+02 0.022 30.5 19.5 77 227-307 593-669 (769)
240 KOG0243|consensus 37.0 9.7E+02 0.021 31.6 16.1 36 259-294 480-515 (1041)
241 cd07679 F-BAR_PACSIN2 The F-BA 37.0 3.4E+02 0.0073 30.2 11.0 75 231-305 131-211 (258)
242 KOG4593|consensus 36.8 9.8E+02 0.021 30.3 21.8 92 202-297 121-214 (716)
243 PRK11281 hypothetical protein; 36.8 8.4E+02 0.018 32.3 15.9 141 175-335 59-213 (1113)
244 PF10267 Tmemb_cc2: Predicted 36.7 3.3E+02 0.0072 31.9 11.3 12 228-239 217-228 (395)
245 PF08826 DMPK_coil: DMPK coile 36.6 3.1E+02 0.0068 24.5 9.3 39 250-288 20-58 (61)
246 TIGR02988 YaaA_near_RecF S4 do 36.6 42 0.0009 28.2 3.3 25 79-108 34-58 (59)
247 PRK01156 chromosome segregatio 36.6 9.5E+02 0.02 30.1 23.7 16 468-483 531-546 (895)
248 PF09730 BicD: Microtubule-ass 35.7 1E+03 0.022 30.2 25.3 33 159-191 17-49 (717)
249 PF09789 DUF2353: Uncharacteri 35.7 5.2E+02 0.011 29.6 12.4 28 418-445 187-217 (319)
250 COG3883 Uncharacterized protei 35.5 3.1E+02 0.0067 30.7 10.4 52 260-311 36-87 (265)
251 TIGR01061 parC_Gpos DNA topois 35.4 1E+03 0.022 30.0 16.1 19 283-301 455-473 (738)
252 PF09787 Golgin_A5: Golgin sub 35.1 8.4E+02 0.018 29.0 15.2 14 470-483 417-430 (511)
253 PRK03947 prefoldin subunit alp 35.0 4.3E+02 0.0093 25.6 12.2 29 266-294 105-133 (140)
254 PRK00106 hypothetical protein; 34.5 8E+02 0.017 29.9 14.3 100 228-330 59-162 (535)
255 PRK04778 septation ring format 34.5 8.9E+02 0.019 29.1 18.5 12 366-377 454-465 (569)
256 smart00363 S4 S4 RNA-binding d 34.4 53 0.0012 25.2 3.4 27 79-110 26-52 (60)
257 PF09728 Taxilin: Myosin-like 34.4 7.2E+02 0.015 28.0 18.4 142 158-319 151-301 (309)
258 KOG4403|consensus 33.8 1.3E+02 0.0029 35.7 7.6 16 422-437 406-421 (575)
259 KOG1961|consensus 33.7 1.1E+03 0.023 29.7 15.9 199 207-440 17-222 (683)
260 COG3074 Uncharacterized protei 33.5 3.9E+02 0.0085 25.0 9.0 38 262-299 39-76 (79)
261 KOG1003|consensus 32.4 6.9E+02 0.015 27.2 12.1 132 226-358 7-142 (205)
262 PF08614 ATG16: Autophagy prot 32.3 5.5E+02 0.012 26.5 11.2 44 262-305 137-180 (194)
263 COG1842 PspA Phage shock prote 32.3 6.8E+02 0.015 27.1 16.2 83 203-293 62-144 (225)
264 PRK07720 fliJ flagellar biosyn 32.1 4.9E+02 0.011 25.4 14.8 46 231-276 6-51 (146)
265 PF06160 EzrA: Septation ring 32.0 9.8E+02 0.021 28.8 22.9 112 174-285 213-336 (560)
266 PF05514 HR_lesion: HR-like le 32.0 29 0.00063 35.1 1.9 20 875-894 91-110 (138)
267 PF13275 S4_2: S4 domain; PDB: 31.9 29 0.00062 31.0 1.6 31 79-114 33-63 (65)
268 COG4026 Uncharacterized protei 31.8 3.1E+02 0.0067 30.5 9.4 56 247-305 151-206 (290)
269 PF10805 DUF2730: Protein of u 31.7 1.9E+02 0.0042 27.6 7.2 50 262-311 42-93 (106)
270 PRK05759 F0F1 ATP synthase sub 31.5 5E+02 0.011 25.3 13.0 50 232-284 29-78 (156)
271 PF14662 CCDC155: Coiled-coil 31.1 7E+02 0.015 26.9 15.0 50 274-326 65-114 (193)
272 PRK10963 hypothetical protein; 31.0 84 0.0018 33.2 5.2 66 391-458 5-78 (223)
273 PRK10929 putative mechanosensi 30.8 1.4E+03 0.031 30.4 21.0 41 232-272 118-161 (1109)
274 KOG4809|consensus 30.7 1.1E+03 0.025 29.2 16.7 13 316-328 551-563 (654)
275 COG1382 GimC Prefoldin, chaper 30.7 5.7E+02 0.012 25.7 13.7 86 204-301 24-109 (119)
276 PRK11507 ribosome-associated p 30.6 72 0.0016 29.1 3.9 32 79-115 37-68 (70)
277 PTZ00266 NIMA-related protein 30.2 6.5E+02 0.014 33.0 13.3 31 461-492 731-761 (1021)
278 TIGR02132 phaR_Bmeg polyhydrox 30.0 7.3E+02 0.016 26.7 13.0 81 155-255 72-156 (189)
279 PF05557 MAD: Mitotic checkpoi 29.4 18 0.00039 43.8 0.0 24 453-476 400-423 (722)
280 PRK01777 hypothetical protein; 29.3 54 0.0012 31.0 3.1 31 77-113 48-78 (95)
281 COG4717 Uncharacterized conser 29.2 1E+03 0.023 31.0 14.3 91 203-304 739-839 (984)
282 PF07246 Phlebovirus_NSM: Phle 29.0 7.2E+02 0.016 28.0 11.8 44 161-219 144-187 (264)
283 cd00165 S4 S4/Hsp/ tRNA synthe 29.0 73 0.0016 25.1 3.4 28 79-111 26-53 (70)
284 cd07658 F-BAR_NOSTRIN The F-BA 28.9 7.5E+02 0.016 26.5 16.4 43 262-304 171-213 (239)
285 smart00502 BBC B-Box C-termina 28.4 4.4E+02 0.0096 23.8 9.8 21 312-332 77-97 (127)
286 PF10392 COG5: Golgi transport 28.4 5.7E+02 0.012 25.0 12.3 88 224-311 27-114 (132)
287 PRK07353 F0F1 ATP synthase sub 28.2 5.4E+02 0.012 24.7 14.0 50 232-284 30-79 (140)
288 PRK14472 F0F1 ATP synthase sub 28.2 6.4E+02 0.014 25.5 14.0 50 232-284 43-92 (175)
289 KOG0239|consensus 28.1 1.2E+03 0.026 29.2 14.7 6 517-522 484-489 (670)
290 PF12777 MT: Microtubule-bindi 28.0 3.6E+02 0.0077 30.3 9.6 46 255-300 270-315 (344)
291 PF09304 Cortex-I_coil: Cortex 28.0 6.1E+02 0.013 25.2 12.8 35 246-280 42-76 (107)
292 PF02050 FliJ: Flagellar FliJ 27.9 4.3E+02 0.0093 23.4 13.2 49 267-315 50-98 (123)
293 COG1382 GimC Prefoldin, chaper 27.5 6.4E+02 0.014 25.3 10.2 23 250-272 22-44 (119)
294 PF10174 Cast: RIM-binding pro 27.2 1.4E+03 0.031 29.2 23.2 78 389-478 525-602 (775)
295 COG5185 HEC1 Protein involved 27.2 1.2E+03 0.027 28.5 13.8 49 283-331 337-385 (622)
296 TIGR02449 conserved hypothetic 27.1 3.8E+02 0.0082 24.3 7.7 58 262-322 7-64 (65)
297 PRK01156 chromosome segregatio 26.6 1.3E+03 0.029 28.8 23.0 8 393-400 453-460 (895)
298 PF05010 TACC: Transforming ac 26.3 8.5E+02 0.018 26.3 21.6 44 284-327 144-195 (207)
299 cd07656 F-BAR_srGAP The F-BAR 25.8 8.8E+02 0.019 26.3 17.1 128 159-293 23-162 (241)
300 PF10481 CENP-F_N: Cenp-F N-te 25.4 4.8E+02 0.01 29.7 9.7 72 260-331 16-91 (307)
301 PF14739 DUF4472: Domain of un 25.4 6.7E+02 0.015 24.8 12.1 77 230-306 10-86 (108)
302 PF07111 HCR: Alpha helical co 25.4 1.5E+03 0.033 28.9 15.0 25 433-457 333-357 (739)
303 PF03961 DUF342: Protein of un 25.2 2.8E+02 0.0062 32.0 8.5 18 56-73 162-179 (451)
304 PF09787 Golgin_A5: Golgin sub 25.0 1.2E+03 0.027 27.7 20.9 49 248-296 193-241 (511)
305 PF03962 Mnd1: Mnd1 family; I 24.6 3.5E+02 0.0077 28.2 8.2 12 372-383 176-187 (188)
306 PRK13410 molecular chaperone D 24.5 5.4E+02 0.012 31.7 10.9 43 255-299 559-601 (668)
307 KOG4673|consensus 24.3 1.6E+03 0.035 28.8 22.2 43 620-673 885-927 (961)
308 PF03962 Mnd1: Mnd1 family; I 24.2 6.8E+02 0.015 26.2 10.2 27 255-281 103-129 (188)
309 TIGR02231 conserved hypothetic 24.1 5.9E+02 0.013 30.0 10.8 17 227-243 75-91 (525)
310 KOG0962|consensus 24.1 1.9E+03 0.042 29.8 21.5 69 199-268 787-863 (1294)
311 PLN02939 transferase, transfer 24.1 1.5E+03 0.033 29.8 14.8 20 201-220 294-313 (977)
312 PRK13411 molecular chaperone D 23.8 4.8E+02 0.01 31.8 10.3 8 320-327 589-596 (653)
313 KOG4001|consensus 23.8 1E+03 0.022 26.3 12.0 89 182-282 119-212 (259)
314 KOG1899|consensus 23.5 1.1E+03 0.024 29.9 12.8 15 164-178 109-123 (861)
315 KOG4460|consensus 23.5 1.5E+03 0.033 28.3 14.8 70 237-310 573-643 (741)
316 PRK09343 prefoldin subunit bet 23.4 7E+02 0.015 24.3 13.9 90 203-298 24-114 (121)
317 PF04048 Sec8_exocyst: Sec8 ex 23.4 7.4E+02 0.016 24.6 11.8 95 193-294 10-104 (142)
318 PRK09841 cryptic autophosphory 23.3 1.5E+03 0.032 28.1 17.0 16 204-219 308-323 (726)
319 smart00806 AIP3 Actin interact 23.3 9.5E+02 0.021 28.7 12.0 114 172-299 183-319 (426)
320 KOG2607|consensus 23.2 1.4E+03 0.03 27.7 15.5 31 153-183 355-385 (505)
321 COG4913 Uncharacterized protei 23.2 3.1E+02 0.0068 34.9 8.5 85 351-445 335-440 (1104)
322 PRK10361 DNA recombination pro 22.9 1.4E+03 0.03 27.7 22.5 65 282-350 139-205 (475)
323 PF13747 DUF4164: Domain of un 22.8 6.4E+02 0.014 23.7 9.7 15 227-241 36-50 (89)
324 CHL00118 atpG ATP synthase CF0 22.7 7.8E+02 0.017 24.6 13.0 39 245-283 57-95 (156)
325 KOG4568|consensus 22.6 1.6E+03 0.035 28.3 15.8 107 203-310 523-634 (664)
326 PF05781 MRVI1: MRVI1 protein; 22.6 1.5E+03 0.033 27.9 14.7 13 489-501 378-390 (538)
327 COG2501 S4-like RNA binding pr 22.6 1.1E+02 0.0024 28.2 3.7 37 70-115 32-68 (73)
328 PF08647 BRE1: BRE1 E3 ubiquit 22.4 6.5E+02 0.014 23.6 11.7 52 246-297 29-80 (96)
329 PF00170 bZIP_1: bZIP transcri 22.2 2.9E+02 0.0062 23.7 6.0 35 263-297 27-61 (64)
330 PF14932 HAUS-augmin3: HAUS au 22.2 1E+03 0.022 25.8 12.6 21 428-448 222-242 (256)
331 KOG4572|consensus 22.0 1.9E+03 0.041 28.9 17.6 65 284-350 969-1054(1424)
332 PF02841 GBP_C: Guanylate-bind 21.6 1.1E+03 0.024 25.9 14.0 38 268-305 210-247 (297)
333 PF09763 Sec3_C: Exocyst compl 21.2 1.5E+03 0.034 27.7 13.9 87 171-259 7-96 (701)
334 PLN02939 transferase, transfer 21.2 2E+03 0.043 28.8 15.4 177 248-440 257-455 (977)
335 COG0419 SbcC ATPase involved i 21.2 1.8E+03 0.038 28.2 24.9 24 198-221 524-547 (908)
336 PRK11519 tyrosine kinase; Prov 21.1 9E+02 0.02 29.9 11.9 14 510-523 552-565 (719)
337 KOG0577|consensus 21.1 1.8E+03 0.039 28.3 21.0 84 194-284 559-646 (948)
338 PF02285 COX8: Cytochrome oxid 21.1 1E+02 0.0022 26.1 2.9 29 865-897 9-38 (44)
339 COG4913 Uncharacterized protei 21.0 1.9E+03 0.041 28.5 15.6 117 156-297 617-740 (1104)
340 KOG0612|consensus 21.0 2.2E+03 0.048 29.2 21.1 26 683-708 1050-1075(1317)
341 PRK14474 F0F1 ATP synthase sub 21.0 1.1E+03 0.024 25.7 13.5 48 232-282 30-77 (250)
342 PRK05560 DNA gyrase subunit A; 20.9 1.8E+03 0.039 28.1 16.4 16 285-300 460-475 (805)
343 PF08581 Tup_N: Tup N-terminal 20.9 6.9E+02 0.015 23.3 8.9 43 263-305 26-68 (79)
344 PRK14155 heat shock protein Gr 20.8 1.1E+03 0.023 25.5 12.2 68 202-274 15-83 (208)
345 KOG2264|consensus 20.8 4E+02 0.0087 33.0 8.6 34 261-294 113-146 (907)
346 KOG2911|consensus 20.8 1.5E+03 0.033 27.2 14.0 74 199-277 239-312 (439)
347 TIGR01063 gyrA DNA gyrase, A s 20.5 1.8E+03 0.039 28.1 16.3 18 283-300 455-472 (800)
348 PF04880 NUDE_C: NUDE protein, 20.5 1E+02 0.0022 32.1 3.3 26 304-329 21-46 (166)
349 PRK05689 fliJ flagellar biosyn 20.4 8E+02 0.017 23.8 14.8 32 283-314 85-116 (147)
350 PF08657 DASH_Spc34: DASH comp 20.4 3.4E+02 0.0073 30.0 7.4 20 312-331 237-256 (259)
351 KOG0946|consensus 20.4 1.5E+03 0.033 29.5 13.4 45 237-281 653-697 (970)
352 PF12001 DUF3496: Domain of un 20.1 8.6E+02 0.019 24.1 9.4 81 267-350 5-86 (111)
353 PF15272 BBP1_C: Spindle pole 20.1 1.1E+03 0.024 25.4 14.6 65 203-272 85-149 (196)
354 KOG2264|consensus 20.1 6.9E+02 0.015 31.2 10.2 38 264-301 81-118 (907)
No 1
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.64 E-value=5.5e-16 Score=128.12 Aligned_cols=67 Identities=42% Similarity=0.710 Sum_probs=61.4
Q ss_pred EEEcCCCCcCCCCCCceeeCCccccccceEEEEECC-EEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEEEc
Q psy588 33 VKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNG-KFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109 (903)
Q Consensus 33 VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG-~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrLG 109 (903)
++|||+ ..|+++++++.|||.||.|.+.++ .|+|+|++|+|||||||+++.+ ..+++|.+||+|.||
T Consensus 1 ~~iGR~------~~~di~l~~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~~l~~----~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRS------PDCDIVLPDPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQRLGP----GEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESS------TTSSEEETSTTSSTTSEEEEEETTEEEEEEESSSSS-EEETTEEESS----TSEEEE-TTEEEEET
T ss_pred CEEcCC------CCCCEEECCHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCEEcCC----CCEEECCCCCEEEcC
Confidence 589999 789999999999999999999998 9999999999999999999998 357999999999998
No 2
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.37 E-value=7.5e-12 Score=107.75 Aligned_cols=81 Identities=38% Similarity=0.568 Sum_probs=71.3
Q ss_pred CcceEEEEcccCCCCCeEEEcCCCCcCCCCCC-ceeeCCccccccceEEEEEC-CEEEEEECCCCCceeeCCEecCCCCC
Q psy588 16 FAERKLILENTANKNAAVKIGRCIARAKVAPS-NGIFDCKVLSRNHALIWYYN-GKFYLQDTKSSNGTFVNNQRLSKTNE 93 (903)
Q Consensus 16 f~~RtL~L~sGp~~G~~VtIGRssdrgrps~c-DIVLdDpvVSR~HAeI~~ed-G~~yIrDLGSTNGTFVNGqRLs~g~~ 93 (903)
...+.+.+.. +..++|||+ ..| ++.++++.|||.||.|.+.. +.|++.|..|+|||||||.++..+
T Consensus 11 ~~~~~~~l~~----~~~~~iGr~------~~~~~i~l~~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~~~~~~~-- 78 (102)
T cd00060 11 ASGRRYYLDP----GGTYTIGRD------SDNCDIVLDDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQRVSPG-- 78 (102)
T ss_pred CceeEEEECC----CCeEEECcC------CCcCCEEcCCCCeeCcceEEEEcCCCCEEEEECCCCCCeEECCEECCCC--
Confidence 5567777776 248999999 666 99999999999999999987 899999999999999999999962
Q ss_pred CCCCeecCCCCEEEEcC
Q psy588 94 ESAPHELCSGDVVQFGV 110 (903)
Q Consensus 94 eSePveL~dGDIIrLG~ 110 (903)
.++.|.+||.|.||.
T Consensus 79 --~~~~l~~gd~i~ig~ 93 (102)
T cd00060 79 --EPVRLRDGDVIRLGN 93 (102)
T ss_pred --CcEECCCCCEEEECC
Confidence 369999999999995
No 3
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.34 E-value=3.7e-12 Score=147.79 Aligned_cols=104 Identities=22% Similarity=0.370 Sum_probs=75.8
Q ss_pred CCceEEEecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCce
Q psy588 2 AGTAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGT 81 (903)
Q Consensus 2 tA~aVLt~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGT 81 (903)
.+.+.|.+...+.-. ...+.+.. +...++.|||.+....+ ..-++++++.||+.||+|.+.++.|||+||+|+|||
T Consensus 531 ~~~w~l~~~~~~~~~-~~~~~l~~--~~~~p~~iG~~~~~~~~-~~~i~i~~~~vS~~Ha~i~~~~~~~~~~Dl~S~nGT 606 (668)
T PLN02927 531 KGEWYLIPHGDDCCV-SETLCLTK--DEDQPCIVGSEPDQDFP-GMRIVIPSSQVSKMHARVIYKDGAFFLMDLRSEHGT 606 (668)
T ss_pred cCCeEEEecCCCCcc-cceeeeec--CCCCCeEecCCCCcCCC-CceEEecCCccChhHeEEEEECCEEEEEECCCCCcc
Confidence 466777775443332 24455532 34568999999322111 112589999999999999999999999999999999
Q ss_pred eeCCEe---cCCCCCCCCCeecCCCCEEEEcCc
Q psy588 82 FVNNQR---LSKTNEESAPHELCSGDVVQFGVD 111 (903)
Q Consensus 82 FVNGqR---Ls~g~~eSePveL~dGDIIrLG~t 111 (903)
||||.+ +.. .++.|++|++||+|.||..
T Consensus 607 ~v~~~~~~r~~~--~p~~~~~l~~~d~I~~g~~ 637 (668)
T PLN02927 607 YVTDNEGRRYRA--TPNFPARFRSSDIIEFGSD 637 (668)
T ss_pred EEeCCCCceEec--CCCCceEeCCCCEEEeCCC
Confidence 997655 542 1246899999999999995
No 4
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.34 E-value=5e-12 Score=138.97 Aligned_cols=91 Identities=26% Similarity=0.379 Sum_probs=78.9
Q ss_pred CCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCcc--ccccceEEEEECCEEEEEECCCCCceeeC--CE
Q psy588 11 PNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKV--LSRNHALIWYYNGKFYLQDTKSSNGTFVN--NQ 86 (903)
Q Consensus 11 p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpv--VSR~HAeI~~edG~~yIrDLGSTNGTFVN--Gq 86 (903)
..-.+.....+.+..+ .++|||+ ..|+++++++. |||.||+|.+.+|.|+|+|+ |+|||||| |.
T Consensus 9 ~~l~~g~~~~~~f~~~-----~~~IGR~------~~~d~~l~d~~~~VS~~Ha~I~~~~g~~~l~Dl-StNGT~VN~sg~ 76 (396)
T TIGR03354 9 HQLTPGIAAQKTFGTN-----GGTIGRS------EDCDWVLPDPERHVSGRHARIRYRDGAYLLTDL-STNGVFLNGSGS 76 (396)
T ss_pred ccCCCCcceEEEECCC-----CEEEecC------CCCCEEeCCCCCCcchhhcEEEEECCEEEEEEC-CCCCeEECCCCC
Confidence 3444555667888763 6999999 78999999988 99999999999999999999 99999999 89
Q ss_pred ecCCCCCCCCCeecCCCCEEEEcCceeeecc
Q psy588 87 RLSKTNEESAPHELCSGDVVQFGVDVIETNR 117 (903)
Q Consensus 87 RLs~g~~eSePveL~dGDIIrLG~tVLr~~~ 117 (903)
++.++ .+++|.+||+|+||.+.+++..
T Consensus 77 ~l~~~----~~~~L~~GD~I~iG~~~lrv~~ 103 (396)
T TIGR03354 77 PLGRG----NPVRLEQGDRLRLGDYEIRVSL 103 (396)
T ss_pred CCCCC----CceEcCCCCEEEECCEEEEEEe
Confidence 99874 3689999999999999998763
No 5
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.33 E-value=3.7e-12 Score=122.65 Aligned_cols=71 Identities=31% Similarity=0.501 Sum_probs=66.9
Q ss_pred CeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEEEcC
Q psy588 31 AAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGV 110 (903)
Q Consensus 31 ~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrLG~ 110 (903)
..++|||+ ..+++++++..|||+||.|.+.++.|+++|++|+|||||||.++.. ++.+.+||.|.||.
T Consensus 89 ~~~tigr~------~~~~i~~~~~~vSR~Ha~l~~~~~~~~~~d~~S~nGt~vn~~~v~~------~~~l~~gd~i~i~~ 156 (191)
T COG1716 89 PVTTIGRD------PDNDIVLDDDVVSRRHAELRREGNEVFLEDLGSTNGTYVNGEKVRQ------RVLLQDGDVIRLGG 156 (191)
T ss_pred ceEEeccC------CCCCEEcCCCccccceEEEEEeCCceEEEECCCCcceEECCeEccC------cEEcCCCCEEEECc
Confidence 47899997 7899999999999999999999999999999999999999999986 48999999999999
Q ss_pred cee
Q psy588 111 DVI 113 (903)
Q Consensus 111 tVL 113 (903)
+..
T Consensus 157 ~~~ 159 (191)
T COG1716 157 TLA 159 (191)
T ss_pred cce
Confidence 887
No 6
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.08 E-value=1.6e-10 Score=90.65 Aligned_cols=50 Identities=46% Similarity=0.668 Sum_probs=45.6
Q ss_pred EEEcCCCCcCCCC-CCceeeCCccccccceEEEEECCE-EEEEECCCCCceeeCCEec
Q psy588 33 VKIGRCIARAKVA-PSNGIFDCKVLSRNHALIWYYNGK-FYLQDTKSSNGTFVNNQRL 88 (903)
Q Consensus 33 VtIGRssdrgrps-~cDIVLdDpvVSR~HAeI~~edG~-~yIrDLGSTNGTFVNGqRL 88 (903)
++|||. + .|+++++++.|||.||.|.+..+. |+|.|++|+|||||||+++
T Consensus 1 ~~iGr~------~~~~~i~~~~~~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRS------SEDCDIQLPGPSISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCC------CCCCCEEeCCCCcchhHcEEEECCCCeEEEEECCCCCCeeECCEEC
Confidence 379998 5 899999999999999999997665 9999999999999999985
No 7
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.95 E-value=1.5e-09 Score=120.10 Aligned_cols=90 Identities=26% Similarity=0.355 Sum_probs=74.9
Q ss_pred CCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCc--cccccceEEEEECCEEEEEECCCCCceeeCCEec
Q psy588 11 PNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCK--VLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRL 88 (903)
Q Consensus 11 p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDp--vVSR~HAeI~~edG~~yIrDLGSTNGTFVNGqRL 88 (903)
..-.|.......+..| ...|||+ +.|+..|+|+ .||+.||.|.+.+|.|||+|. |.+||||||..+
T Consensus 11 ~~l~sG~~aq~~f~~~-----~g~IGrs------~dcdW~i~D~~~~VS~~Hc~I~~~dg~f~L~Dt-S~g~l~VNgs~~ 78 (430)
T COG3456 11 QKLESGKAAQKLFDRG-----GGVIGRS------PDCDWQIDDPERFVSKQHCTISYRDGGFCLTDT-SNGGLLVNGSDL 78 (430)
T ss_pred ccCCCchhhhhhhhcC-----CcccccC------CCCCccccCcccccchhheEEEecCCeEEEEec-CCCceeeccccc
Confidence 3334444555666654 6799999 8999999765 699999999999999999999 699999999998
Q ss_pred CCCCCCCCC-eecCCCCEEEEcCceeeec
Q psy588 89 SKTNEESAP-HELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 89 s~g~~eSeP-veL~dGDIIrLG~tVLr~~ 116 (903)
..+. + .+|..||.|.||++++++.
T Consensus 79 ~~g~----~~~RLqqGd~i~iG~y~i~V~ 103 (430)
T COG3456 79 PLGE----GSARLQQGDEILIGRYIIRVH 103 (430)
T ss_pred CCCC----CccccccCCEEeeccEEEEEE
Confidence 8753 4 8999999999999999875
No 8
>KOG1882|consensus
Probab=98.54 E-value=1.1e-07 Score=99.83 Aligned_cols=74 Identities=34% Similarity=0.415 Sum_probs=61.4
Q ss_pred CeEEEcCCCCcCCCCCCceeeCCccccccceEEEEE-------CC------EEEEEECCCCCceeeCCEecCCCCCCCCC
Q psy588 31 AAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYY-------NG------KFYLQDTKSSNGTFVNNQRLSKTNEESAP 97 (903)
Q Consensus 31 ~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~e-------dG------~~yIrDLGSTNGTFVNGqRLs~g~~eSeP 97 (903)
..+.+||.. ...||.++.+..|.+||+|.|. +| ..||.||||+||||+|+.+|.+. ..
T Consensus 194 s~yL~gRer-----kIaDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~NgTfLNnk~Iepq----RY 264 (293)
T KOG1882|consen 194 SCYLDGRER-----KIADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSGNGTFLNNKVIEPQ----RY 264 (293)
T ss_pred eeeecCcee-----eeeccCCCCccccccceeeeeeecccccCCCccceeeeeEEEecCCCCcceecCcccCch----he
Confidence 357788851 3567889999999999999992 32 48999999999999999999984 35
Q ss_pred eecCCCCEEEEcCcee
Q psy588 98 HELCSGDVVQFGVDVI 113 (903)
Q Consensus 98 veL~dGDIIrLG~tVL 113 (903)
++|..+|+|.||-..-
T Consensus 265 yEL~ekDvlkfgfs~r 280 (293)
T KOG1882|consen 265 YELREKDVLKFGFSSR 280 (293)
T ss_pred eeeecCceeeeccchH
Confidence 8999999999996543
No 9
>KOG1881|consensus
Probab=98.49 E-value=1.8e-07 Score=108.95 Aligned_cols=75 Identities=28% Similarity=0.387 Sum_probs=64.9
Q ss_pred CeEEEcCCCCcCCCCCCceeeCCccccccceEEEEE--C---------CEEEEEECCCCCceeeCCEecCCCCCCCCCee
Q psy588 31 AAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYY--N---------GKFYLQDTKSSNGTFVNNQRLSKTNEESAPHE 99 (903)
Q Consensus 31 ~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~e--d---------G~~yIrDLGSTNGTFVNGqRLs~g~~eSePve 99 (903)
..+.|||- ..||+.+.++.|||.||.+.|. + .+|||.|+|||+|||+|-.|+.+. .-.+
T Consensus 177 ~~~~fgr~------~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~rvppk----~yir 246 (793)
T KOG1881|consen 177 AACLFGRL------GGCDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKDRVPPK----VYIR 246 (793)
T ss_pred eeEEeccc------CCCccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccccCCCc----chhh
Confidence 36899998 7999999999999999999992 1 249999999999999999999984 3467
Q ss_pred cCCCCEEEEcCceeee
Q psy588 100 LCSGDVVQFGVDVIET 115 (903)
Q Consensus 100 L~dGDIIrLG~tVLr~ 115 (903)
++.|++++||+..+.+
T Consensus 247 ~~Vg~v~~fggsTrl~ 262 (793)
T KOG1881|consen 247 DRVGHVARFGGSTRLY 262 (793)
T ss_pred hhHHHHHHhcCceEEE
Confidence 8999999999976643
No 10
>KOG0245|consensus
Probab=98.33 E-value=2.9e-05 Score=93.65 Aligned_cols=72 Identities=22% Similarity=0.395 Sum_probs=60.4
Q ss_pred eEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCE--EEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEEEc
Q psy588 32 AVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGK--FYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109 (903)
Q Consensus 32 ~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~--~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrLG 109 (903)
..+|||..+. ...||++....|--.||.|.-.+|. +.|.-. --.-|||||+.|.. |..|+.||+|.+|
T Consensus 478 ~TrVG~~~a~---~~~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~-e~aetyVNGk~v~e------p~qL~~GdRiilG 547 (1221)
T KOG0245|consen 478 ETRVGREDAS---SRQDIVLSGQLIREQHCSIRNEGGNDVVTLEPC-EDAETYVNGKLVTE------PTQLRSGDRIILG 547 (1221)
T ss_pred ceecCCCCcc---cCCceEecchhhhhhceEEEecCCCceEEeccC-CccceeEccEEcCC------cceeccCCEEEEc
Confidence 8999998432 3567999999999999999998887 777665 34689999999987 8999999999999
Q ss_pred Ccee
Q psy588 110 VDVI 113 (903)
Q Consensus 110 ~tVL 113 (903)
+..+
T Consensus 548 ~~H~ 551 (1221)
T KOG0245|consen 548 GNHV 551 (1221)
T ss_pred Ccee
Confidence 9644
No 11
>KOG1880|consensus
Probab=97.65 E-value=3.6e-05 Score=83.35 Aligned_cols=77 Identities=29% Similarity=0.389 Sum_probs=66.6
Q ss_pred CeEEEcCCCCcCCCCCCceeeCCccccccceEEEE--ECCEEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEEE
Q psy588 31 AAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWY--YNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQF 108 (903)
Q Consensus 31 ~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~--edG~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrL 108 (903)
....+||. ...||.+|+...+||.||.+.+ ....++|.|++|++|||+...|+.+ ..|+.+..|..+.|
T Consensus 38 r~y~Fgrn-----~q~~df~idh~scSrvhaa~vyhkhl~~~~lidl~s~hgtf~g~~rL~~----~~p~~l~i~~~~~f 108 (337)
T KOG1880|consen 38 RRYLFGRN-----HQTCDFVIDHASCSRVHAALVYHKHLSRIFLIDLGSTHGTFLGNERLEP----HKPVQLEIGSTFHF 108 (337)
T ss_pred hhhhhccC-----CCccceEeecchhhhhHhhhhhhhccceEEEEEccCCcceeeeeeeecc----CCCccccCCceEEE
Confidence 35778887 2689999999999999999999 3455999999999999999999998 56899999999999
Q ss_pred cCceeeec
Q psy588 109 GVDVIETN 116 (903)
Q Consensus 109 G~tVLr~~ 116 (903)
|.......
T Consensus 109 gasTr~y~ 116 (337)
T KOG1880|consen 109 GASTRIYL 116 (337)
T ss_pred eccceeee
Confidence 98765543
No 12
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=97.20 E-value=0.00095 Score=74.40 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=75.1
Q ss_pred ecCCCCCCcceEEEEcccCCCCCeEEEc-CCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCceeeCC--
Q psy588 9 CRPNSHPFAERKLILENTANKNAAVKIG-RCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNN-- 85 (903)
Q Consensus 9 ~~p~ShPf~~RtL~L~sGp~~G~~VtIG-Rssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGTFVNG-- 85 (903)
++-.++|..++.+.+..| .++|| ++ ..|++++.|+.|||+|+.|.+...++.+.+ +..|.++||
T Consensus 3 lrvl~G~~~G~~~~L~~g-----~~~iG~~~------~~~di~L~d~~~~~~h~~l~v~~~~~~l~~--~~~~~~~~g~~ 69 (410)
T TIGR02500 3 LRVLSGPHRGAELPLPEG-----NLVLGTDA------ADCDIVLSDGGIAAVHVSLHVRLEGVTLAG--AVEPAWEEGGV 69 (410)
T ss_pred EEEecCCCCCcEEECCCC-----ceEeccCC------CCcEEEeCCCCccchheEEEEcCceEEEec--CCcceeECCcc
Confidence 445678999999999986 69999 88 899999999999999999999999999987 467899999
Q ss_pred EecCCCCCCCCCeecCCCCEEEEcCceeeec
Q psy588 86 QRLSKTNEESAPHELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 86 qRLs~g~~eSePveL~dGDIIrLG~tVLr~~ 116 (903)
.+... ..+|..+-.+.+|...+.+.
T Consensus 70 ~~~~~------g~~l~~~~~l~~g~~~~~~g 94 (410)
T TIGR02500 70 LPDEE------GTPLPSGTPLLVAGVAFALG 94 (410)
T ss_pred cccCC------CCccCCCCceecceeEEecc
Confidence 44444 36788999999998887764
No 13
>KOG0615|consensus
Probab=96.76 E-value=0.0016 Score=73.66 Aligned_cols=74 Identities=28% Similarity=0.494 Sum_probs=58.4
Q ss_pred CCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEE---------------CCEEEEEECCCCCceeeCCEecCCCCCC
Q psy588 30 NAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYY---------------NGKFYLQDTKSSNGTFVNNQRLSKTNEE 94 (903)
Q Consensus 30 G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~e---------------dG~~yIrDLGSTNGTFVNGqRLs~g~~e 94 (903)
.+.+++||. ..|+..+....+|..|-.|... ...+|+.|. |+||||||..++..+.
T Consensus 63 nd~f~fGR~------~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~e~i~k~~-- 133 (475)
T KOG0615|consen 63 NDEFTFGRG------DSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVNDEMIGKGL-- 133 (475)
T ss_pred cceEEecCC------CcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccHhHhhccc--
Confidence 457999998 6777777777677777766542 235999998 9999999999998854
Q ss_pred CCCeecCCCCEEEEcCceee
Q psy588 95 SAPHELCSGDVVQFGVDVIE 114 (903)
Q Consensus 95 SePveL~dGDIIrLG~tVLr 114 (903)
...|..||.|.||.+...
T Consensus 134 --~r~lkN~dei~is~p~~~ 151 (475)
T KOG0615|consen 134 --SRILKNGDEISISIPALK 151 (475)
T ss_pred --cccccCCCEEEeccchhh
Confidence 478999999999986443
No 14
>KOG4673|consensus
Probab=96.60 E-value=0.52 Score=56.67 Aligned_cols=77 Identities=25% Similarity=0.319 Sum_probs=54.0
Q ss_pred chhhhhccccccCCCchhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhcChhhhHhhhh-ccc--cccccccchhhhhHHH
Q psy588 402 DEYFLRFNESESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQ-SKY--LHLDKIGGLELQLEKL 478 (903)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~ 478 (903)
--||++-|. +.++-||..-+|-.-.|.-+|-|+.+|+.|...--+.|.-|-- -.- =..|.+-|++.+|+.|
T Consensus 843 hl~~~~~nt------tt~eh~eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL 916 (961)
T KOG4673|consen 843 HLKSITPNT------TTSEHYEALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDL 916 (961)
T ss_pred HHhhhcCCC------chHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 356666654 3567788887776667888899999998887766555544321 111 1357789999999999
Q ss_pred Hhhhcc
Q psy588 479 KQTYNS 484 (903)
Q Consensus 479 ~~~~~~ 484 (903)
.|.|+.
T Consensus 917 ~qRy~a 922 (961)
T KOG4673|consen 917 RQRYAA 922 (961)
T ss_pred HHHHHH
Confidence 999985
No 15
>PRK03918 chromosome segregation protein; Provisional
Probab=96.37 E-value=2.9 Score=50.45 Aligned_cols=12 Identities=8% Similarity=-0.047 Sum_probs=6.6
Q ss_pred ccchhhhhhhhc
Q psy588 389 KYFDDVHQILTQ 400 (903)
Q Consensus 389 ~~~~~~~~~~~~ 400 (903)
+.+..+|+.-++
T Consensus 432 ~~~~~~Cp~c~~ 443 (880)
T PRK03918 432 KKAKGKCPVCGR 443 (880)
T ss_pred HhcCCCCCCCCC
Confidence 335567776433
No 16
>KOG1892|consensus
Probab=95.95 E-value=0.013 Score=71.29 Aligned_cols=90 Identities=20% Similarity=0.219 Sum_probs=69.5
Q ss_pred CCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCceeeCCEecCCC
Q psy588 12 NSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSKT 91 (903)
Q Consensus 12 ~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGTFVNGqRLs~g 91 (903)
..+....+.+.+..+ ++-+|.. .-..+.|.+..|.|-.+||.|..-+|-+.|....--.-|||||.+|.+
T Consensus 364 ~dG~~s~~ri~L~~~-----vtEVGs~----~~~~~~iqLfGP~IqprHc~it~meGVvTvTP~~~DA~t~VnGh~isq- 433 (1629)
T KOG1892|consen 364 PDGSDSRKRIRLQLS-----VTEVGSE----KLDDNSIQLFGPGIQPRHCDITNMEGVVTVTPRSMDAETYVNGHRISQ- 433 (1629)
T ss_pred CCCCCcceeEEeccC-----ceecccc----ccCCcceeeeCCCCCccccchhhccceEEecccccchhhhccceecch-
Confidence 333344455666653 6667765 223457889999999999999999999999988666789999999987
Q ss_pred CCCCCCeecCCCCEEEEcCc-eeeec
Q psy588 92 NEESAPHELCSGDVVQFGVD-VIETN 116 (903)
Q Consensus 92 ~~eSePveL~dGDIIrLG~t-VLr~~ 116 (903)
+..|++|+.|+||.. .++|.
T Consensus 434 -----ttiL~~G~~v~fGa~hsfkF~ 454 (1629)
T KOG1892|consen 434 -----TTILQSGMKVQFGASHSFKFV 454 (1629)
T ss_pred -----hhhhccCCEEEeccceeEEec
Confidence 689999999999985 45553
No 17
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.83 E-value=1.4 Score=53.37 Aligned_cols=150 Identities=17% Similarity=0.266 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHH
Q psy588 155 EELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWK-ALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIK 233 (903)
Q Consensus 155 KELyQLSqYLqEALqREqmLEqKLaiLQeIL~~Tk~AAE~sWq-aLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLl 233 (903)
.|+-+|..-|+-..+.|+-|+.++..|..-= ..+....+ +..+.|.|-.|+..|.++.+. |+ +-+
T Consensus 425 ~dvkkLraeLq~~Rq~E~ELRsqis~l~~~E----r~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~-------DK---q~l 490 (697)
T PF09726_consen 425 ADVKKLRAELQSSRQSEQELRSQISSLTNNE----RSLKSELSQLRQENEQLQNKLQNLVQARQQ-------DK---QSL 490 (697)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhhccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHH
Confidence 3777777778888888888888877553311 11111121 233445666666666655554 22 344
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HhhHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy588 234 LLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQD-TERKL---VNIENECS-NLQELLDRNRDELEEIIKKYQDQVTKNKE 308 (903)
Q Consensus 234 qLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeE-lERsL---~~sE~EC~-~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~ 308 (903)
...|.|-.=|..++-++++.|.|.-.+-++.++ .-|++ ..+..||. ++|.+-..+..|++.|.........++..
T Consensus 491 ~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~ 570 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRE 570 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666543332222111 00110 11122444 47777788888888888877777777777
Q ss_pred hhchHHHHHh
Q psy588 309 FESTIDQLLN 318 (903)
Q Consensus 309 kES~~~~L~~ 318 (903)
+|+...+++.
T Consensus 571 ~e~~~~~lr~ 580 (697)
T PF09726_consen 571 LESELQELRK 580 (697)
T ss_pred HHHHHHHHHH
Confidence 7664444443
No 18
>KOG0241|consensus
Probab=94.29 E-value=2.1 Score=53.42 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=56.0
Q ss_pred eEEEcCCCCcCCCCCCceeeCCccccccceEEEEE-CCEEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEEEcC
Q psy588 32 AVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYY-NGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGV 110 (903)
Q Consensus 32 ~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~e-dG~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrLG~ 110 (903)
...||-. ..-+|++..-++=++||.|..+ +|.+++..+.+. -+||||..+.. +..|++||+|..|.
T Consensus 468 ~tlig~~------~~~~i~l~glgi~p~h~vidI~~dg~l~~~p~~~~-R~~VNGs~v~~------~t~L~~GdRiLwGn 534 (1714)
T KOG0241|consen 468 HTLIGLF------KSQDIQLSGLGIQPKHCVIDIESDGELRLTPLLNA-RSCVNGSLVCS------TTQLWHGDRILWGN 534 (1714)
T ss_pred ceeeccc------cCcceeeecCcccCccceeeeccCCcEEecccccc-eeeecCceecc------ccccccCceEEecc
Confidence 4566654 4566788888899999999994 566888888554 99999999876 68999999999999
Q ss_pred cee
Q psy588 111 DVI 113 (903)
Q Consensus 111 tVL 113 (903)
..|
T Consensus 535 nHF 537 (1714)
T KOG0241|consen 535 NHF 537 (1714)
T ss_pred cce
Confidence 755
No 19
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.29 E-value=9.8 Score=41.42 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=16.1
Q ss_pred eecCCCCEEEEcCceeeec
Q psy588 98 HELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 98 veL~dGDIIrLG~tVLr~~ 116 (903)
..+..||.|..|...+..+
T Consensus 57 i~V~eG~~V~kG~~L~~ld 75 (423)
T TIGR01843 57 ILVREGDRVKAGQVLVELD 75 (423)
T ss_pred EEeCCCCEecCCCeEEEEc
Confidence 5688999999999988876
No 20
>PRK10698 phage shock protein PspA; Provisional
Probab=94.07 E-value=5.2 Score=42.17 Aligned_cols=125 Identities=10% Similarity=0.249 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhh
Q psy588 160 LNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDK 239 (903)
Q Consensus 160 LSqYLqEALqREqmLEqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK 239 (903)
++..+..+...+++++.-+.-+++-+...+.+... ....- -.++.++.+++..-
T Consensus 15 in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~----------~~A~~----------------k~~er~~~~~~~~~ 68 (222)
T PRK10698 15 INALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSAR----------ALAEK----------------KQLTRRIEQAEAQQ 68 (222)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH----------------HHHHHHHHHHHHHH
Confidence 34555566666777777766666666554333111 11111 22334555666667
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q psy588 240 STYENQLKEVMK--------KMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFE 310 (903)
Q Consensus 240 ~~YE~~AKESLr--------KlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kE 310 (903)
..|+..|+-+|+ .+|.+|..+..++..++..+...+..+..|+..+..++..+.++..|......+.+..+
T Consensus 69 ~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 69 VEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777877775 57899999999999999999999999999999999999999998888877666544433
No 21
>PRK11637 AmiB activator; Provisional
Probab=93.89 E-value=11 Score=42.53 Aligned_cols=8 Identities=13% Similarity=0.173 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy588 156 ELYQLNTC 163 (903)
Q Consensus 156 ELyQLSqY 163 (903)
+|-++.+.
T Consensus 48 ~l~~l~~q 55 (428)
T PRK11637 48 QLKSIQQD 55 (428)
T ss_pred HHHHHHHH
Confidence 33333333
No 22
>KOG0995|consensus
Probab=93.89 E-value=5.1 Score=47.75 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=61.6
Q ss_pred hhHhhHHHHHHHHHHHHhc-cCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSK-SFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNL 281 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sK-N~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~L 281 (903)
+.|...-+.|+.|++...+ ...+..+|+....|++|-.+|+........| +-....+++.+...+...|.||..+
T Consensus 238 e~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k----~~~~~~~l~~l~~Eie~kEeE~e~l 313 (581)
T KOG0995|consen 238 EDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSK----KQHMEKKLEMLKSEIEEKEEEIEKL 313 (581)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777778888886655 3456688889999999999998776665544 3344556666666677777777777
Q ss_pred HHHHHHhHHHHHH
Q psy588 282 QELLDRNRDELEE 294 (903)
Q Consensus 282 Keq~E~Lq~EL~E 294 (903)
++....|+..+..
T Consensus 314 q~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 314 QKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHHh
Confidence 7766666655543
No 23
>KOG0979|consensus
Probab=93.83 E-value=5.2 Score=50.29 Aligned_cols=139 Identities=19% Similarity=0.219 Sum_probs=86.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhchhhhHhhHHHHHHHHHHHHhccCChhH
Q psy588 151 SMPLEELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADV---SWKALIQEDRLLSRVEFLESQLAAYSKSFTDDK 227 (903)
Q Consensus 151 EVpLKELyQLSqYLqEALqREqmLEqKLaiLQeIL~~Tk~AAE~---sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDk 227 (903)
.+...+|.+...-|.+-..+|+.|++++..-++-+...+...+. .-.-..+..+++++|++||...-... =.+
T Consensus 170 Aig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~----y~~ 245 (1072)
T KOG0979|consen 170 AIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVE----YKK 245 (1072)
T ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----hHh
Confidence 34445677777777777778888888877766666655555433 33356778999999999987765531 112
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q psy588 228 LRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIK 297 (903)
Q Consensus 228 lRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~ 297 (903)
.+.+. ...|..| ..||+.+|++.++...-..+.+++|.....+..+|......+.....-..+..+
T Consensus 246 ~~~ey---~~~k~~~-~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~e 311 (1072)
T KOG0979|consen 246 HDREY---NAYKQAK-DRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFE 311 (1072)
T ss_pred hhHHH---HHHHHHH-HHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2222222 246777888888887777777777776666766666655444333333333333
No 24
>KOG4643|consensus
Probab=93.80 E-value=4 Score=51.30 Aligned_cols=88 Identities=23% Similarity=0.267 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHHHHHH
Q psy588 251 KKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKL 330 (903)
Q Consensus 251 rKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqell~~v 330 (903)
+.+.++=.++..+..++-.+|.++..|...|.+..+.+++++.+....|...-++|++++. .+.+++-|-..|+++|
T Consensus 477 ~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~---~l~~lE~ENa~LlkqI 553 (1195)
T KOG4643|consen 477 DQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEE---LLGNLEEENAHLLKQI 553 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHH
Confidence 3445566666777788888888899999999999998888888888888888887777763 6668888888999999
Q ss_pred HHHHH--hhhccc
Q psy588 331 QYETL--QAQKQL 341 (903)
Q Consensus 331 ~~~~~--~~~~~~ 341 (903)
+.+-. +++-.+
T Consensus 554 ~~Lk~t~qn~~~L 566 (1195)
T KOG4643|consen 554 QSLKTTSQNGALL 566 (1195)
T ss_pred HHHHHHhHHHHHH
Confidence 88776 444333
No 25
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.63 E-value=9.9 Score=48.93 Aligned_cols=61 Identities=11% Similarity=0.226 Sum_probs=43.2
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhcChhhhHhhhhccccccccccchhhhhHHHHhhh
Q psy588 417 NSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEKLKQTY 482 (903)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (903)
.+++.++.-...++..|..+..++..++..++.-...|.++.. ...+..++.++..|...+
T Consensus 984 ~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~-----~~~l~el~~eI~~l~~~~ 1044 (1311)
T TIGR00606 984 AQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKR-----ENELKEVEEELKQHLKEM 1044 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 3456666666778888888888888888888887777877742 234456777777776544
No 26
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.58 E-value=16 Score=45.06 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=6.8
Q ss_pred ceeeCCEecC
Q psy588 80 GTFVNNQRLS 89 (903)
Q Consensus 80 GTFVNGqRLs 89 (903)
..|+||.+++
T Consensus 109 ~~~~n~~~~~ 118 (1164)
T TIGR02169 109 YYYLNGQRVR 118 (1164)
T ss_pred eEEECCcccc
Confidence 4678887664
No 27
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.37 E-value=8.7 Score=42.30 Aligned_cols=28 Identities=7% Similarity=-0.051 Sum_probs=16.8
Q ss_pred hhhHhHHHHHHHHHHHHHhhhccccccc
Q psy588 318 NSNQEKSNTLEKLQYETLQAQKQLDAFT 345 (903)
Q Consensus 318 ~~~qEKqell~~v~~~~~~~~~~~~~~~ 345 (903)
-...|...|.+++..++..-|-.+..+.
T Consensus 273 ~t~~Ev~~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 273 WTRSEVKRLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHHCcEEEEEe
Confidence 3566666676666666666555554443
No 28
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=93.29 E-value=9.8 Score=40.62 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=57.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy588 229 RDEIKLLHRDKSTYENQLKEVMK--------KMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQ 300 (903)
Q Consensus 229 RkeLlqLqeEK~~YE~~AKESLr--------KlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~s 300 (903)
.+++-+++.+...||..|+.+|+ .++++|-..+..+..++..+.....-...+|.....|...+.++..+..
T Consensus 58 e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 58 ERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777888888888888874 5788888888888888888888888888888888888888888877766
Q ss_pred H
Q psy588 301 D 301 (903)
Q Consensus 301 E 301 (903)
.
T Consensus 138 ~ 138 (225)
T COG1842 138 A 138 (225)
T ss_pred H
Confidence 5
No 29
>KOG0933|consensus
Probab=93.13 E-value=8.7 Score=48.56 Aligned_cols=37 Identities=14% Similarity=0.336 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy588 263 KCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKY 299 (903)
Q Consensus 263 KLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~ 299 (903)
..+++++.+...+.....+....+.++.++..+.++.
T Consensus 823 E~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv 859 (1174)
T KOG0933|consen 823 EHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKV 859 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555555555553
No 30
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.13 E-value=8 Score=39.74 Aligned_cols=118 Identities=18% Similarity=0.313 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhH
Q psy588 161 NTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKS 240 (903)
Q Consensus 161 SqYLqEALqREqmLEqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~ 240 (903)
+..+..+...+.+|++.+.-++.-+...+.+..... .. ...+++++.+....-.
T Consensus 15 ~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~----------a~----------------~~~le~~~~~~~~~~~ 68 (221)
T PF04012_consen 15 NELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVM----------AN----------------QKRLERKLDEAEEEAE 68 (221)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH----------------HHHHHHHHHHHHHHHH
Confidence 444455555567777777777766665444421111 11 1122234444455555
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy588 241 TYENQLKEVM--------KKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVT 304 (903)
Q Consensus 241 ~YE~~AKESL--------rKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt 304 (903)
.|+..|+.+| +.++++|.....++..++..+.........++..+..++..+.++..+......
T Consensus 69 ~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 69 KWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666555 356677777888888888888888888888877777777777777776555333
No 31
>KOG0980|consensus
Probab=92.97 E-value=15 Score=46.07 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy588 245 QLKEVMKKMLAEKVEVMQKCQDTERKLVNIENEC-------SNLQELLDRNRDELEEIIKKYQDQVT 304 (903)
Q Consensus 245 ~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC-------~~LKeq~E~Lq~EL~EL~~K~sEqvt 304 (903)
.-|+..-.+.+++.++.+|..+.++-++.++.-. ..|-.+++.++.+.+.+..|+.++..
T Consensus 428 klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~ 494 (980)
T KOG0980|consen 428 KLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAK 494 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4567777888888888888777777666555433 33334445555555555555555443
No 32
>PRK03918 chromosome segregation protein; Provisional
Probab=92.79 E-value=25 Score=42.71 Aligned_cols=34 Identities=9% Similarity=0.226 Sum_probs=17.5
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 155 EELYQLNTC---IQEALQRENMLKNKLSKLQHIVIDL 188 (903)
Q Consensus 155 KELyQLSqY---LqEALqREqmLEqKLaiLQeIL~~T 188 (903)
++++.+..| ...+..+.+.++.++..|...+...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 188 (880)
T PRK03918 152 RQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRT 188 (880)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 3334445555666666666666443
No 33
>KOG0996|consensus
Probab=92.55 E-value=33 Score=44.37 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=12.1
Q ss_pred hhHhhHHHHHHHHHHHHhcc
Q psy588 203 DRLLSRVEFLESQLAAYSKS 222 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN 222 (903)
+++...++.||+|+..+.+.
T Consensus 830 k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 830 KRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666665553
No 34
>KOG2293|consensus
Probab=92.50 E-value=0.29 Score=57.20 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=58.6
Q ss_pred CCeEEEcCCCCcCCCCCCceee------CCccccccceEEEE-ECCEEEEEECCCCCceeeCCEecCCCCCCCCCeecCC
Q psy588 30 NAAVKIGRCIARAKVAPSNGIF------DCKVLSRNHALIWY-YNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCS 102 (903)
Q Consensus 30 G~~VtIGRssdrgrps~cDIVL------dDpvVSR~HAeI~~-edG~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~d 102 (903)
+..+++||++. .+.+-+ +...|||+.|.|.. .+|.|+|..+| .--.||||.+|..|. -+.|..
T Consensus 447 k~EVtlGRat~-----d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlG-K~~I~vng~~l~~gq----~~~L~~ 516 (547)
T KOG2293|consen 447 KKEVTLGRATG-----DLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLG-KRSILVNGGELDRGQ----KVILKN 516 (547)
T ss_pred CcceEeeccCC-----CcceeeeccccCccceeeccceeEEeccCCcEEeccCc-ceeEEeCCccccCCc----eEEecc
Confidence 44799999842 222222 23459999999999 67889999996 678999999998864 378888
Q ss_pred CCEEEEcCceeeec
Q psy588 103 GDVVQFGVDVIETN 116 (903)
Q Consensus 103 GDIIrLG~tVLr~~ 116 (903)
..+|.|-+-.|.|.
T Consensus 517 nclveIrg~~FiF~ 530 (547)
T KOG2293|consen 517 NCLVEIRGLRFIFE 530 (547)
T ss_pred CcEEEEccceEEEe
Confidence 88888887666654
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.38 E-value=30 Score=41.55 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=21.9
Q ss_pred hhhHhhHHHHHHHHHHHHhccCCh-hHHHHHHHHHhhhhHHHH
Q psy588 202 EDRLLSRVEFLESQLAAYSKSFTD-DKLRDEIKLLHRDKSTYE 243 (903)
Q Consensus 202 EDrLLSRIE~LEnQLq~~sKN~tE-DklRkeLlqLqeEK~~YE 243 (903)
...+..||..||..+..+.++..+ +++...+.++..++...+
T Consensus 215 ~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~ 257 (546)
T PF07888_consen 215 LAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLE 257 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777766554422 233333444444444333
No 36
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=92.30 E-value=11 Score=39.33 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=55.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy588 231 EIKLLHRDKSTYENQLKEVMK--------KMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQ 302 (903)
Q Consensus 231 eLlqLqeEK~~YE~~AKESLr--------KlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEq 302 (903)
++.++...-..|+..|+.+|+ .++++|......+..++..+.....-+..++.++..++..+.++..+-...
T Consensus 60 ~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l 139 (219)
T TIGR02977 60 RVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKAL 139 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555556655554 366789999999999999999999999999999999999999888887653
Q ss_pred HH
Q psy588 303 VT 304 (903)
Q Consensus 303 vt 304 (903)
..
T Consensus 140 ~a 141 (219)
T TIGR02977 140 AI 141 (219)
T ss_pred HH
Confidence 33
No 37
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.02 E-value=37 Score=41.64 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=10.7
Q ss_pred hhHhhhhccchhhHHHhhhc
Q psy588 655 LKLVIKDYQNVLPSIVESMN 674 (903)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~ 674 (903)
+..|...++.++|.++..|-
T Consensus 1034 F~~v~~~f~~~F~~lf~~~~ 1053 (1179)
T TIGR02168 1034 FKDTFDQVNENFQRVFPKLF 1053 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445555555666655543
No 38
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=91.47 E-value=15 Score=41.73 Aligned_cols=144 Identities=17% Similarity=0.169 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHH
Q psy588 171 ENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVM 250 (903)
Q Consensus 171 EqmLEqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESL 250 (903)
.+.|.+|+..+-+-=..+++.++.--.-+.+-++|...-+.|-+||-.. +..+.++..+.+. ..+.+
T Consensus 70 ~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~---------~~vf~k~k~~~q~----LE~li 136 (401)
T PF06785_consen 70 GQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHV---------REVFMKTKGDIQH----LEGLI 136 (401)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---------HHHHHHhcchHHH----HHHHH
Confidence 4667777777766556666666666666777788988888888888763 4466666666555 34567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHhhhhhhc----hHHHHHhhhHh
Q psy588 251 KKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD----QVTKNKEFES----TIDQLLNSNQE 322 (903)
Q Consensus 251 rKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE----qvt~~~~kES----~~~~L~~~~qE 322 (903)
+++-+|+-..+-+|.++.+.+..-|.|.+.|-+.+...-.-.++|.+.|.. |++-.+.+.. +.-...-+|.|
T Consensus 137 ~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~E 216 (401)
T PF06785_consen 137 RHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYE 216 (401)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 788888877777777777777777777777754444443444555555544 4433332221 22234455666
Q ss_pred HHHHH
Q psy588 323 KSNTL 327 (903)
Q Consensus 323 Kqell 327 (903)
-..|+
T Consensus 217 irnLL 221 (401)
T PF06785_consen 217 IRNLL 221 (401)
T ss_pred HHHHH
Confidence 66665
No 39
>KOG0804|consensus
Probab=91.20 E-value=6.5 Score=45.92 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=50.9
Q ss_pred HHHhhhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy588 233 KLLHRDKSTYENQLKEVMK------KMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKN 306 (903)
Q Consensus 233 lqLqeEK~~YE~~AKESLr------KlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~ 306 (903)
.+++.+|+.|+...+|+=. -+..+|--+++++++++..+.....|....|+....+...++-...++.++..+
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~- 425 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEER- 425 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-
Confidence 4777888888776655432 344455555566666666666666666666666555555555555544443332
Q ss_pred hhhhchHHHHHhhhHhHHHHHHH
Q psy588 307 KEFESTIDQLLNSNQEKSNTLEK 329 (903)
Q Consensus 307 ~~kES~~~~L~~~~qEKqell~~ 329 (903)
+++++.+..-..++|.++
T Consensus 426 -----~~~~~~s~d~~I~dLqEQ 443 (493)
T KOG0804|consen 426 -----EKEALGSKDEKITDLQEQ 443 (493)
T ss_pred -----HHHHHHHHHHHHHHHHHH
Confidence 333444444445555433
No 40
>KOG0161|consensus
Probab=91.06 E-value=24 Score=47.67 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=23.7
Q ss_pred EEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEEEcCceeeec
Q psy588 70 FYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 70 ~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrLG~tVLr~~ 116 (903)
|.|---.+..|+|..+..-...- -.....+++..++|.+-+-|.
T Consensus 714 y~lla~~~~~~~~~d~k~~~~~~---~~~l~~d~~lyriG~tKvFfk 757 (1930)
T KOG0161|consen 714 YELLAADEPKKGFSDGKKACEKI---LEELLLDKNLYRIGHTKVFFK 757 (1930)
T ss_pred HHhhhhhhccccccccchhHHHH---HHHHhcccceEeecceeeeeh
Confidence 33333346778888764322100 002345677788998766554
No 41
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.51 E-value=42 Score=43.01 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 156 ELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKA 191 (903)
Q Consensus 156 ELyQLSqYLqEALqREqmLEqKLaiLQeIL~~Tk~A 191 (903)
++..+...+..+...-..++.++..+...+......
T Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1163)
T COG1196 675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQ 710 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555666666666666666554433
No 42
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.48 E-value=21 Score=35.96 Aligned_cols=84 Identities=21% Similarity=0.193 Sum_probs=43.8
Q ss_pred hhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy588 202 EDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNL 281 (903)
Q Consensus 202 EDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~L 281 (903)
-|.|-.++..||..|..... ....+..+..+ +|..+..+-++.-.+.+.+.++ +.|...+
T Consensus 19 ~dsle~~v~~LEreLe~~q~---------~~e~~~~daEn----~k~eie~L~~el~~lt~el~~L-------~~EL~~l 78 (140)
T PF10473_consen 19 KDSLEDHVESLERELEMSQE---------NKECLILDAEN----SKAEIETLEEELEELTSELNQL-------ELELDTL 78 (140)
T ss_pred HhhHHHHHHHHHHHHHHHHH---------hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 48888999999999998543 22222222222 3333444444333444444444 4444455
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 282 QELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 282 Keq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
++.-+.+..++++...+..+..+.
T Consensus 79 ~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 79 RSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554443
No 43
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=90.26 E-value=0.76 Score=53.95 Aligned_cols=75 Identities=16% Similarity=0.101 Sum_probs=58.9
Q ss_pred eEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEE--ECCEEEEEECCCCCceeeCCEecCCCCCCCC
Q psy588 19 RKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWY--YNGKFYLQDTKSSNGTFVNNQRLSKTNEESA 96 (903)
Q Consensus 19 RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~--edG~~yIrDLGSTNGTFVNGqRLs~g~~eSe 96 (903)
..|.++.| .+.|||+ +. ..|.|+..||+...+.. ..+.+.+.-+| .|.+-|||+-+.++.
T Consensus 25 ~~~~~~~~-----~~~~gr~------pe--t~i~d~~cs~~qv~l~a~~~~~~v~~k~lg-~np~~~~~~~~~~~~---- 86 (526)
T TIGR01663 25 HFIHLDAG-----ALFLGRG------PE--TGIRDRKCSKRQIELQADLEKATVALKQLG-VNPCGTGGLELKPGG---- 86 (526)
T ss_pred CeeccCCC-----ceEEccC------cc--cccchhhhchhhheeeecccCceEEEEEcc-CCCcccCceEecCCC----
Confidence 34555553 6889998 33 24568889999999888 57778899996 599999999999964
Q ss_pred CeecCCCCEEEEcCc
Q psy588 97 PHELCSGDVVQFGVD 111 (903)
Q Consensus 97 PveL~dGDIIrLG~t 111 (903)
.+.|.+||++.+=..
T Consensus 87 ~~~l~~g~~l~~v~~ 101 (526)
T TIGR01663 87 EGELGHGDLLEIVNG 101 (526)
T ss_pred eeeecCCCEEEEecc
Confidence 489999999987553
No 44
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.24 E-value=64 Score=41.96 Aligned_cols=74 Identities=11% Similarity=0.212 Sum_probs=47.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 228 LRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 228 lRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
+..-+..+...-...+..+.....+.-.+.-.+..++.++...+...++.+..-+++.+....++..+..+...
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~ 465 (1311)
T TIGR00606 392 IKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQ 465 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444555556666666666667777777788887777777777777766666666666666553
No 45
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=89.91 E-value=22 Score=36.79 Aligned_cols=124 Identities=17% Similarity=0.296 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhchhhhHhhHHHH--HHHHHHHHhccCChhHHH
Q psy588 153 PLEELYQLNTCIQEALQRENMLKNKLSKL-QHIVIDLKKAADVSWKALIQEDRLLSRVEF--LESQLAAYSKSFTDDKLR 229 (903)
Q Consensus 153 pLKELyQLSqYLqEALqREqmLEqKLaiL-QeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~--LEnQLq~~sKN~tEDklR 229 (903)
.-.|+.+|...|...++..++-+..+... +.|+ ..+| |+|++.+.. -|..+ --..+|
T Consensus 31 tR~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~ly-------~~~F------~ELIRQVTi~C~ERGl-------LL~rvr 90 (189)
T PF10211_consen 31 TRQDVIQLQEWLDKMLQQRQARETGICPVREELY-------SQCF------DELIRQVTIDCPERGL-------LLLRVR 90 (189)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHH-------HHHH------HHHHHHHHhCcHHHhH-------HHHHHH
Confidence 34689999998888887776655443222 3333 3344 566665522 11111 112445
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy588 230 DEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKY 299 (903)
Q Consensus 230 keLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~ 299 (903)
.++..+.. .|+...+.++.-.+..-+++++...+++......+.++..|+.+...++...+.+..+.
T Consensus 91 de~~~~l~---~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~ 157 (189)
T PF10211_consen 91 DEYRMTLD---AYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKRE 157 (189)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555443 24445554444444444444444555555555555555555555555555554444433
No 46
>PRK02224 chromosome segregation protein; Provisional
Probab=89.67 E-value=28 Score=42.56 Aligned_cols=8 Identities=25% Similarity=0.111 Sum_probs=3.5
Q ss_pred CeEEEcCC
Q psy588 31 AAVKIGRC 38 (903)
Q Consensus 31 ~~VtIGRs 38 (903)
-.+.+|..
T Consensus 25 ~~~i~G~N 32 (880)
T PRK02224 25 VTVIHGVN 32 (880)
T ss_pred eEEEECCC
Confidence 34444543
No 47
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=89.67 E-value=20 Score=37.83 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 164 IQEALQRENMLKNKLSKLQHIVIDLKKAADVSW 196 (903)
Q Consensus 164 LqEALqREqmLEqKLaiLQeIL~~Tk~AAE~sW 196 (903)
+...-+|......|+..|..-+......++..+
T Consensus 80 ~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e 112 (237)
T PF00261_consen 80 RKVLENREQSDEERIEELEQQLKEAKRRAEEAE 112 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555556666666666655555544444
No 48
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=89.58 E-value=57 Score=41.92 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=16.7
Q ss_pred ccCCCCCccceeeccccccCcccchhh
Q psy588 508 TVAPNQKDVNIIDVSNQYNSEKDFVSI 534 (903)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (903)
.|.|+.|.+. .++..-..||-++.+
T Consensus 1053 ~a~ppgK~~~--~l~~LSGGEKsLtAl 1077 (1163)
T COG1196 1053 SARPPGKKLQ--SLSLLSGGEKSLTAL 1077 (1163)
T ss_pred EEECCCCCcc--chhhcCCcHHHHHHH
Confidence 4667777776 666666777776654
No 49
>KOG4643|consensus
Probab=89.55 E-value=61 Score=41.63 Aligned_cols=166 Identities=21% Similarity=0.202 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch-hhhHhhHHHHHHHHHHHHhccCChhHHHH-----
Q psy588 157 LYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQ-EDRLLSRVEFLESQLAAYSKSFTDDKLRD----- 230 (903)
Q Consensus 157 LyQLSqYLqEALqREqmLEqKLaiLQeIL~~Tk~AAE~sWqaLId-EDrLLSRIE~LEnQLq~~sKN~tEDklRk----- 230 (903)
+-++-+.+++...++++|..-...|+.-..+....+... +.... -|+|++-.+.++.++...... -..+++
T Consensus 424 i~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq-~~e~e~~~q~ls~~~Q~~~et~el~~~--iknlnk~L~~r 500 (1195)
T KOG4643|consen 424 INQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ-SLENEELDQLLSLQDQLEAETEELLNQ--IKNLNKSLNNR 500 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 334455556666666666666666666555555544443 11222 255555555555544432110 000111
Q ss_pred --HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHhh
Q psy588 231 --EIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRD--ELEEIIKKYQDQVTKN 306 (903)
Q Consensus 231 --eLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~--EL~EL~~K~sEqvt~~ 306 (903)
++-.+...|... |+-+++...-=-..-++|+++++.+-+.|.|=.+|-.+...|.. +-..+.++-.+.....
T Consensus 501 ~~elsrl~a~~~el----keQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~ 576 (1195)
T KOG4643|consen 501 DLELSRLHALKNEL----KEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELI 576 (1195)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Confidence 111222222111 11111111111222356666666666666666666666666655 3333333322211111
Q ss_pred h-hhhchHHHHHhhhHhHHHHHHH
Q psy588 307 K-EFESTIDQLLNSNQEKSNTLEK 329 (903)
Q Consensus 307 ~-~kES~~~~L~~~~qEKqell~~ 329 (903)
. ++..+.+.|.++.-++.+|.++
T Consensus 577 ~~elkk~idaL~alrrhke~LE~e 600 (1195)
T KOG4643|consen 577 HNELKKYIDALNALRRHKEKLEEE 600 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112555666666666666433
No 50
>KOG0161|consensus
Probab=89.52 E-value=57 Score=44.43 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=22.4
Q ss_pred hhHHHHHhHHHHhHHHhHhhhcccchhHHhHHHhh
Q psy588 604 ASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKL 638 (903)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (903)
..|+.|+.++.+.+......+++..+++-.-+.|+
T Consensus 1332 ~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~ 1366 (1930)
T KOG0161|consen 1332 DLLREQLEEEQEAKNELERKLSKANAELAQWKKKF 1366 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777767777777666665554443
No 51
>KOG0971|consensus
Probab=89.15 E-value=61 Score=41.27 Aligned_cols=86 Identities=23% Similarity=0.295 Sum_probs=53.6
Q ss_pred hhchhhhHhhHHHHHHHHHHHHhc----------c----------CChhHHHHHHHHHh----hhhHHHHHHHHHHHHHH
Q psy588 198 ALIQEDRLLSRVEFLESQLAAYSK----------S----------FTDDKLRDEIKLLH----RDKSTYENQLKEVMKKM 253 (903)
Q Consensus 198 aLIdEDrLLSRIE~LEnQLq~~sK----------N----------~tEDklRkeLlqLq----eEK~~YE~~AKESLrKl 253 (903)
.+.+=.-|..|++.||..|.++.- + .--+.+|..|++|- .+|+.-+..-|| |.+.
T Consensus 330 LQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~ke-lE~k 408 (1243)
T KOG0971|consen 330 LQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKE-LEKK 408 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-HHHH
Confidence 344446788888889988887421 0 11234556666655 456665555555 3455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy588 254 LAEKVEVMQKCQDTERKLVNIENECSNLQEL 284 (903)
Q Consensus 254 LQEKlEA~qKLeElERsL~~sE~EC~~LKeq 284 (903)
..|-.+..+..+.+.|.+..+|--+.-++++
T Consensus 409 ~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 409 NSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666677777777777777777765
No 52
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.96 E-value=49 Score=38.05 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 228 LRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLV 272 (903)
Q Consensus 228 lRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~ 272 (903)
+++++..+..+...|+. .|.++-.+...+...+..++..+.
T Consensus 239 l~~~i~~l~~~i~~~~~----~L~~l~~~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 239 LTDELLNLVMDIEDPSA----ALNKLNTAAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHhcccccHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666653 355555555556666655555544
No 53
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=88.83 E-value=49 Score=37.87 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=16.3
Q ss_pred eecCCCCEEEEcCceeeec
Q psy588 98 HELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 98 veL~dGDIIrLG~tVLr~~ 116 (903)
..++.||.|.=|...++++
T Consensus 73 i~V~eG~~V~~G~~L~~ld 91 (457)
T TIGR01000 73 NYLKENKFVKKGDLLVVYD 91 (457)
T ss_pred EEcCCCCEecCCCEEEEEC
Confidence 5688999999999988876
No 54
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=88.76 E-value=17 Score=42.92 Aligned_cols=65 Identities=23% Similarity=0.331 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 226 DKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 226 DklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
+++|+-|-+|.++|++ ++=||.++...|++++.+|++++..++.-|..-+.||.++..+.+.|..
T Consensus 365 nkLk~niEeLIedKY~-----------viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~ 429 (527)
T PF15066_consen 365 NKLKENIEELIEDKYR-----------VILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVH 429 (527)
T ss_pred HHHHHHHHHHHHhHhH-----------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHH
Confidence 4788888999999987 7788999999999999999999999998888888999998887777654
No 55
>PRK11637 AmiB activator; Provisional
Probab=88.70 E-value=49 Score=37.65 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=6.7
Q ss_pred cceeeccccccCCCC
Q psy588 499 DTLLINEEKTVAPNQ 513 (903)
Q Consensus 499 ~~~~~~~~~~~~~~~ 513 (903)
+.+.+.....|.+.+
T Consensus 379 ~~~~v~~G~~V~~G~ 393 (428)
T PRK11637 379 QSALVSVGAQVRAGQ 393 (428)
T ss_pred CcCCCCCcCEECCCC
Confidence 344444444444443
No 56
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.62 E-value=35 Score=37.68 Aligned_cols=106 Identities=20% Similarity=0.339 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHhHHHHHHHHHH
Q psy588 226 DKLRDEIKLLHRDKST---YENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIE----NECSNLQELLDRNRDELEEIIKK 298 (903)
Q Consensus 226 DklRkeLlqLqeEK~~---YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE----~EC~~LKeq~E~Lq~EL~EL~~K 298 (903)
+.+.+.+..|+.|+.. +...+.+.+.++...+-..+.++..++......+ .|...+|..+.....++.....+
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~ 231 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKE 231 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555543 3344455555555555555666665555444322 34455555555555555555555
Q ss_pred HHHHHHhhhhhhchHHHHHhhhHhHHHHHHHHHHHH
Q psy588 299 YQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYET 334 (903)
Q Consensus 299 ~sEqvt~~~~kES~~~~L~~~~qEKqell~~v~~~~ 334 (903)
..+...+ ++++.+.+.....+|++++++|+-.+
T Consensus 232 l~el~~e---l~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 232 LAELQEE---LEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 34455677788888888877766443
No 57
>KOG1029|consensus
Probab=88.45 E-value=25 Score=43.77 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=11.9
Q ss_pred HhHHHHHHhcChhhhHhh
Q psy588 440 YTSLQEIVNRNEEQLAFL 457 (903)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~ 457 (903)
|..|-..-.||+..++|-
T Consensus 696 yrAly~FeaRs~dEisf~ 713 (1118)
T KOG1029|consen 696 YRALYPFEARSHDEISFE 713 (1118)
T ss_pred EeeecccccCCccccccc
Confidence 445556667788777774
No 58
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.82 E-value=19 Score=43.20 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhcChhhhHhhhhcc
Q psy588 427 KDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSK 461 (903)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (903)
..++++.-.+.+|++.+... -..+++-|.+++
T Consensus 300 qaSqq~~~~L~~EL~~~~~~---RDrt~aeLh~aR 331 (546)
T PF07888_consen 300 QASQQEAELLRKELSDAVNV---RDRTMAELHQAR 331 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh
Confidence 44566666677776555443 366777777766
No 59
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.63 E-value=29 Score=33.76 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=42.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy588 231 EIKLLHRDKSTYENQLKEVMKK---MLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNK 307 (903)
Q Consensus 231 eLlqLqeEK~~YE~~AKESLrK---lLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~ 307 (903)
.+..+.++-..-...|+++-.+ -+.--.++.+.|..+...+.....+...|+...+..+..+......
T Consensus 25 ~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s--------- 95 (132)
T PF07926_consen 25 QLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS--------- 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 3333334444434444444333 2222233444444444444444444444444444444444333333
Q ss_pred hhhchHHHHHhhhHhHHHHHHHHHHHHHhhh
Q psy588 308 EFESTIDQLLNSNQEKSNTLEKLQYETLQAQ 338 (903)
Q Consensus 308 ~kES~~~~L~~~~qEKqell~~v~~~~~~~~ 338 (903)
-..+...++.|..++.++++-+.-++.
T Consensus 96 ----w~~qk~~le~e~~~~~~r~~dL~~QN~ 122 (132)
T PF07926_consen 96 ----WEEQKEQLEKELSELEQRIEDLNEQNK 122 (132)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334456666666666665555443
No 60
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.62 E-value=17 Score=42.15 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy588 245 QLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKE 308 (903)
Q Consensus 245 ~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~ 308 (903)
.+.--|+++-+||-.+.+++..+-+.+..+.++...+.+++.+++.++..|.+.+...+++.+.
T Consensus 106 ~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qs 169 (499)
T COG4372 106 AARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQS 169 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556688899999999999999999999999999999999999999999999988776665433
No 61
>PRK02224 chromosome segregation protein; Provisional
Probab=87.55 E-value=79 Score=38.76 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=10.7
Q ss_pred HHHHHhhccCCCchhhhHH
Q psy588 688 EEEITQQSLNPLSSELDET 706 (903)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~ 706 (903)
...+.+..+.|++..+.+.
T Consensus 728 ~~~~~~~~~~~~~~~~~~~ 746 (880)
T PRK02224 728 RAELRQRNVETLERMLNET 746 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655444
No 62
>KOG4807|consensus
Probab=86.90 E-value=70 Score=37.49 Aligned_cols=128 Identities=19% Similarity=0.264 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 188 LKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDT 267 (903)
Q Consensus 188 Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeEl 267 (903)
.+.+|+.+|-+| |..=-.+|+-|-.|-+. --+++|++--.|.-+-..-...|-|+++++++|.++-+ |+
T Consensus 335 ~qatCERgfAaM--EetHQkkiEdLQRqHqR-----ELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRE--Le-- 403 (593)
T KOG4807|consen 335 SQATCERGFAAM--EETHQKKIEDLQRQHQR-----ELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERE--LE-- 403 (593)
T ss_pred HHHHHHhhHHHH--HHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH--HH--
Confidence 445688888776 55555566666666655 12344555555555555667788999999999766532 22
Q ss_pred HHHHHhhHHHHHHHHHH----HHHhHHHHHHHHHHHHHH----HHhhhhhhchHHHHHhhhHhHHHHHH
Q psy588 268 ERKLVNIENECSNLQEL----LDRNRDELEEIIKKYQDQ----VTKNKEFESTIDQLLNSNQEKSNTLE 328 (903)
Q Consensus 268 ERsL~~sE~EC~~LKeq----~E~Lq~EL~EL~~K~sEq----vt~~~~kES~~~~L~~~~qEKqell~ 328 (903)
++- .....+..||.+ ++.+|-+|+-|.+.|+.. ..-.+.+|..+..|+.-.+|-|+|..
T Consensus 404 -Ksq-SvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELna 470 (593)
T KOG4807|consen 404 -KSQ-SVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNA 470 (593)
T ss_pred -hhh-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 221 223345556655 456677777777776651 11234455555555555555555543
No 63
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.68 E-value=33 Score=42.14 Aligned_cols=74 Identities=16% Similarity=0.355 Sum_probs=49.7
Q ss_pred hhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHH
Q psy588 202 EDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEK---VEVMQKCQDTERKLVNIENEC 278 (903)
Q Consensus 202 EDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEK---lEA~qKLeElERsL~~sE~EC 278 (903)
|..|.+++.+|.+ .+-.+|.+|.+|+.+-...|.+.-+..+.-.+|| ..+++||.+.+|....+|.++
T Consensus 441 E~ELRsqis~l~~---------~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL 511 (697)
T PF09726_consen 441 EQELRSQISSLTN---------NERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQL 511 (697)
T ss_pred HHHHHHHHhhccc---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666544433 4456677777777777777777666666666666 566777777777777777766
Q ss_pred HHHHHH
Q psy588 279 SNLQEL 284 (903)
Q Consensus 279 ~~LKeq 284 (903)
..-|+.
T Consensus 512 ~eErk~ 517 (697)
T PF09726_consen 512 QEERKA 517 (697)
T ss_pred HHHHHH
Confidence 666543
No 64
>KOG0976|consensus
Probab=86.16 E-value=95 Score=39.31 Aligned_cols=61 Identities=23% Similarity=0.131 Sum_probs=35.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh-----------chHHHHHhhhHhHHHHH
Q psy588 267 TERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFE-----------STIDQLLNSNQEKSNTL 327 (903)
Q Consensus 267 lERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kE-----------S~~~~L~~~~qEKqell 327 (903)
.+.+-.-.+.|.-.++++-.+++.+|-+...|...--.+..++| |+.+.+++.+.|+|-|+
T Consensus 314 seqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~ 385 (1265)
T KOG0976|consen 314 SEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLL 385 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555666677777777777666443222222232 35566677778888776
No 65
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.12 E-value=1.1e+02 Score=40.85 Aligned_cols=76 Identities=12% Similarity=0.178 Sum_probs=40.5
Q ss_pred hhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHH-------------------HHHHHHHHHHHHHHHH
Q psy588 198 ALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTY-------------------ENQLKEVMKKMLAEKV 258 (903)
Q Consensus 198 aLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~Y-------------------E~~AKESLrKlLQEKl 258 (903)
+-++.+.|...++.+++++..+.. .-..++.++..+......+ ...|++.|+..-+.+.
T Consensus 433 ~~~SdEeLe~~LenF~aklee~e~--qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~ 510 (1486)
T PRK04863 433 PDLTADNAEDWLEEFQAKEQEATE--ELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRH 510 (1486)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHH
Confidence 355566677666666666666443 2223334444444333333 3457777877777777
Q ss_pred HHHHHHHHHHHHHHhhHH
Q psy588 259 EVMQKCQDTERKLVNIEN 276 (903)
Q Consensus 259 EA~qKLeElERsL~~sE~ 276 (903)
.|.+ +..+++.|..+++
T Consensus 511 ~~~~-~~~~~~~~~~l~~ 527 (1486)
T PRK04863 511 LAEQ-LQQLRMRLSELEQ 527 (1486)
T ss_pred HHHh-hHHHHHHHHHHHH
Confidence 6643 2334444444443
No 66
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.83 E-value=35 Score=41.43 Aligned_cols=129 Identities=16% Similarity=0.285 Sum_probs=70.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccC------------Ch--hHH
Q psy588 164 IQEALQREN-MLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSF------------TD--DKL 228 (903)
Q Consensus 164 LqEALqREq-mLEqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~------------tE--Dkl 228 (903)
..+.+..|. ++.+|+..|..-+. +..-..++..+++..||.+|+.+..-. ++ ..+
T Consensus 16 ya~~lk~e~a~~qqr~~qmseev~----------~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~L 85 (617)
T PF15070_consen 16 YAQQLKEESAQWQQRMQQMSEEVR----------TLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQL 85 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHH
Confidence 344455553 34556554443333 333446777888888888887754211 11 134
Q ss_pred HHHHHHHhhhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------------HHHH
Q psy588 229 RDEIKLLHRDKSTYENQ------LKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNL-----------------QELL 285 (903)
Q Consensus 229 RkeLlqLqeEK~~YE~~------AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~L-----------------Keq~ 285 (903)
..++..|..++...+.. -++.|-++.+|+ ..||.++|+.+...+.+..-. =++.
T Consensus 86 q~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~Eq---EerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN 162 (617)
T PF15070_consen 86 QAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQ---EERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQN 162 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhH
Confidence 55555565555444432 234555555444 456666676666655553222 1245
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q psy588 286 DRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 286 E~Lq~EL~EL~~K~sEqvt~ 305 (903)
..|+.+|.++...|-...+.
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne 182 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNE 182 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67777777777776664443
No 67
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.57 E-value=34 Score=33.65 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=26.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHH
Q psy588 280 NLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNT 326 (903)
Q Consensus 280 ~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqel 326 (903)
........++.++.++..+|.....-+++|.-..++|.+=-++..++
T Consensus 65 ~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 65 ALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 33445556667777777777776666666654444444433333333
No 68
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.27 E-value=9.4 Score=42.26 Aligned_cols=54 Identities=28% Similarity=0.460 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy588 246 LKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKY 299 (903)
Q Consensus 246 AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~ 299 (903)
..+-++++-+|.-++.+.|.++|+....+.+|...+++..+.++.+-.+.-..+
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~ 101 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREY 101 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666666666655555544443333333
No 69
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.19 E-value=32 Score=34.54 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q psy588 262 QKCQDTERKLVNIENECSNL 281 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~L 281 (903)
+++..+++.......|+..+
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 70
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=85.18 E-value=62 Score=35.24 Aligned_cols=95 Identities=20% Similarity=0.213 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy588 210 EFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQ------LKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQE 283 (903)
Q Consensus 210 E~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~------AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKe 283 (903)
..||..|.... -.++-++..-+..+..-+..|... |.+.|+.-++.+......+..+.++|...+.+....+.
T Consensus 133 ~~le~~l~~~~-~~~~gg~~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~ 211 (297)
T PF02841_consen 133 QPLEEKLKQGC-YSKPGGYQLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQSKESMENSILQADQQLTEKEKEIEEEQA 211 (297)
T ss_dssp HHHHHHHHCTT-TSSTTHHHHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCCCCCHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666311 123335666677777777788776 78999999999988888888888888888888888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHh
Q psy588 284 LLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 284 q~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
.++.++.+...+..........
T Consensus 212 k~e~~e~e~~~l~e~~~~~~~~ 233 (297)
T PF02841_consen 212 KAEAAEKEKEKLEEKQKEQEQM 233 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777777665553333
No 71
>KOG0996|consensus
Probab=84.92 E-value=1.4e+02 Score=39.13 Aligned_cols=96 Identities=21% Similarity=0.344 Sum_probs=45.9
Q ss_pred hhHhhHHHHHHHHHHHHhccC-----ChhHHH-------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSKSF-----TDDKLR-------DEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERK 270 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~-----tEDklR-------keLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERs 270 (903)
+++.+++.-||.++..-.+.. -+++.+ .++-+|+..+.+.+..+.+-+.++-++=.--......+|..
T Consensus 408 K~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~eke 487 (1293)
T KOG0996|consen 408 KRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKE 487 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 889999999999999855421 122333 34444444455555555544444333222222223333333
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q psy588 271 LVNIENECSNLQELLDRNRDELEEIIKK 298 (903)
Q Consensus 271 L~~sE~EC~~LKeq~E~Lq~EL~EL~~K 298 (903)
|.-........+..+.-.+.+|+-|..+
T Consensus 488 l~~~~~~~n~~~~e~~vaesel~~L~~~ 515 (1293)
T KOG0996|consen 488 LMPLLKQVNEARSELDVAESELDILLSR 515 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444333333
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=84.90 E-value=1e+02 Score=37.59 Aligned_cols=64 Identities=23% Similarity=0.301 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhchhhhHhhHHHHHHHHHHHHhc
Q psy588 156 ELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKA--------ADVSWKALIQEDRLLSRVEFLESQLAAYSK 221 (903)
Q Consensus 156 ELyQLSqYLqEALqREqmLEqKLaiLQeIL~~Tk~A--------AE~sWqaLIdEDrLLSRIE~LEnQLq~~sK 221 (903)
++..|........+|-.-|+..|..|+.-+...... .+..++. .-.+|...++.|+.+|++..+
T Consensus 37 ev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~--E~~~L~kElE~L~~qlqaqv~ 108 (617)
T PF15070_consen 37 EVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQA--EAEHLRKELESLEEQLQAQVE 108 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555566666666554433211111 1111111 114577888889988888544
No 73
>KOG1029|consensus
Probab=84.86 E-value=1.1e+02 Score=38.50 Aligned_cols=127 Identities=18% Similarity=0.165 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHH
Q psy588 156 ELYQLNTCIQEALQRENMLKNKLSKL-QHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKL 234 (903)
Q Consensus 156 ELyQLSqYLqEALqREqmLEqKLaiL-QeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlq 234 (903)
||-+=++.|-|..+||+....+...- ++--.. .-.+.-|+..++-++=|.|-+-+|.| .+++-|+++..
T Consensus 328 ELerRRq~leeqqqreree~eqkEreE~ekker--erqEqErk~qlElekqLerQReiE~q--------rEEerkkeie~ 397 (1118)
T KOG1029|consen 328 ELERRRQALEEQQQREREEVEQKEREEEEKKER--ERQEQERKAQLELEKQLERQREIERQ--------REEERKKEIER 397 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 66666777888888876554443322 222221 11244555554444444444444433 45555666666
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 235 LHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 235 LqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
++--|.-.|.+-+ +--||.-..+.+.+. ..-....-.++++...++.+++-|..|+..
T Consensus 398 rEaar~ElEkqRq-----lewErar~qem~~Qk----~reqe~iv~~nak~~ql~~eletLn~k~qq 455 (1118)
T KOG1029|consen 398 REAAREELEKQRQ-----LEWERARRQEMLNQK----NREQEWIVYLNAKKKQLQQELETLNFKLQQ 455 (1118)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555443322 222222222222222 222223334455555555666655555544
No 74
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=84.42 E-value=56 Score=34.43 Aligned_cols=87 Identities=20% Similarity=0.315 Sum_probs=68.0
Q ss_pred HHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 193 DVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLV 272 (903)
Q Consensus 193 E~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~ 272 (903)
...|... -+.|-.-++.||+.|.. +|+++..++-.+..-|..+..-|+.+-+.=-+...+--++|+++.
T Consensus 131 ~naW~~~--n~~Le~~~~~le~~l~~---------~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~ 199 (221)
T PF05700_consen 131 ENAWLIH--NEQLEAMLKRLEKELAK---------LKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACE 199 (221)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567543 34555555555555555 577999999999999999999999888888888999999999999
Q ss_pred hhHHHHHHHHHHHHHhHH
Q psy588 273 NIENECSNLQELLDRNRD 290 (903)
Q Consensus 273 ~sE~EC~~LKeq~E~Lq~ 290 (903)
.+++|+..+|+.....+.
T Consensus 200 ~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 200 ELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999877666544
No 75
>KOG1853|consensus
Probab=84.33 E-value=75 Score=35.47 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHH
Q psy588 245 QLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKS 324 (903)
Q Consensus 245 ~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKq 324 (903)
.-||.|||-+.|--.|..-|+..+|+-. =.++++.+.|.++.++..=.+..+.++|.+-+.+.++.-|-.
T Consensus 105 aikeql~kyiReLEQaNDdLErakRati----------~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEar 174 (333)
T KOG1853|consen 105 AIKEQLRKYIRELEQANDDLERAKRATI----------YSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEAR 174 (333)
T ss_pred HHHHHHHHHHHHHHHhccHHHHhhhhhh----------hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3467777777654444444433333322 246777788888888777777778888887777788888888
Q ss_pred HHHHHHHHHHH
Q psy588 325 NTLEKLQYETL 335 (903)
Q Consensus 325 ell~~v~~~~~ 335 (903)
+|-.+++.-|-
T Consensus 175 dlrqelavr~k 185 (333)
T KOG1853|consen 175 DLRQELAVRTK 185 (333)
T ss_pred HHHHHHHHHHh
Confidence 88766665543
No 76
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.75 E-value=50 Score=33.00 Aligned_cols=63 Identities=25% Similarity=0.362 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHH
Q psy588 227 KLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELE 293 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~ 293 (903)
.+.+.|..|+++-...+...+++..|+=+ +..+...++|....++.+...|-..|+.+...+.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e----~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLRE----ADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444444455444444455554444432 4455556666666666666666655555444443
No 77
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.67 E-value=81 Score=35.35 Aligned_cols=90 Identities=20% Similarity=0.193 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhH
Q psy588 242 YENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQ 321 (903)
Q Consensus 242 YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~q 321 (903)
+=..+|+.|....++=....+++++++..+...........++-..++.+++++... ..+| ..-...
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~----~~~~---------r~~t~~ 271 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK----LEQC---------RGFTFK 271 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhc---------CCCCHH
Confidence 444555555555555555555555555555444444444443333333333333221 1112 223467
Q ss_pred hHHHHHHHHHHHHHhhhcccccc
Q psy588 322 EKSNTLEKLQYETLQAQKQLDAF 344 (903)
Q Consensus 322 EKqell~~v~~~~~~~~~~~~~~ 344 (903)
|...|.+++...|..-|-.+..+
T Consensus 272 Ei~~Lk~~~~~Le~l~g~~~~~~ 294 (312)
T smart00787 272 EIEKLKEQLKLLQSLTGWKITKL 294 (312)
T ss_pred HHHHHHHHHHHHHHHhCCeeEec
Confidence 77888888888877766665554
No 78
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.46 E-value=74 Score=34.79 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy588 252 KMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQ 300 (903)
Q Consensus 252 KlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~s 300 (903)
++++++..+.+.+.+.+..+..++.+....+..+..++.++.++...+.
T Consensus 186 ~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 234 (423)
T TIGR01843 186 KLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQ 234 (423)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433334444444444444444444444444444444444444433
No 79
>KOG0250|consensus
Probab=82.80 E-value=1.6e+02 Score=38.20 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=47.8
Q ss_pred hhhhhhhHhhhccccccchhhhhhhhhhcccccccccccceeeehhhhhhhhhccccce
Q psy588 532 VSINKEIEESSRKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKETW 590 (903)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (903)
.+...+|+..-+-+.+...+|..|.|+.-.++--|-+.++-+-.|+++..-+++---.|
T Consensus 657 ~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~ 715 (1074)
T KOG0250|consen 657 FSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKK 715 (1074)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888888888889999999999999888888888888888888777655544
No 80
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=82.75 E-value=22 Score=40.50 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=18.8
Q ss_pred hhhHhhHHHHHHHHHHHHhccCChhH
Q psy588 202 EDRLLSRVEFLESQLAAYSKSFTDDK 227 (903)
Q Consensus 202 EDrLLSRIE~LEnQLq~~sKN~tEDk 227 (903)
.+.|..++..+|.|+......++++.
T Consensus 249 ~~~l~~~l~~l~~~l~~l~~~y~~~h 274 (498)
T TIGR03007 249 NSELDGRIEALEKQLDALRLRYTDKH 274 (498)
T ss_pred CCchHHHHHHHHHHHHHHHHHhcccC
Confidence 35677788888888888766666663
No 81
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.68 E-value=19 Score=36.28 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=5.6
Q ss_pred HHHHhhHHHHHHHHH
Q psy588 269 RKLVNIENECSNLQE 283 (903)
Q Consensus 269 RsL~~sE~EC~~LKe 283 (903)
+...++..+|..++.
T Consensus 45 ~daEn~k~eie~L~~ 59 (140)
T PF10473_consen 45 LDAENSKAEIETLEE 59 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 82
>KOG0982|consensus
Probab=81.73 E-value=1e+02 Score=36.57 Aligned_cols=146 Identities=23% Similarity=0.237 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHH
Q psy588 174 LKNKLSKLQHIVIDLKK----AADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEV 249 (903)
Q Consensus 174 LEqKLaiLQeIL~~Tk~----AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKES 249 (903)
+..|+.-|++-+..... +.+..=..+..-=.|..|..+||-|+.-- +++.+=.-.++++..-|..+|-.
T Consensus 220 i~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~req-------ElraeE~l~Ee~rrhrEil~k~e 292 (502)
T KOG0982|consen 220 IERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQ-------ELRAEESLSEEERRHREILIKKE 292 (502)
T ss_pred HHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554444333 33344445555677899999999987652 33444444555555544444433
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHh-hhhhhchHHHHHhhhHhHH
Q psy588 250 MKKMLA-EKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEI---IKKYQDQVTK-NKEFESTIDQLLNSNQEKS 324 (903)
Q Consensus 250 LrKlLQ-EKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL---~~K~sEqvt~-~~~kES~~~~L~~~~qEKq 324 (903)
=.+.++ |++++ |++.++..........+.+|.+.+.+-.+.+.+ .+....|+.. .+....|-++|..-.+||.
T Consensus 293 Reasle~Enlqm--r~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~eke 370 (502)
T KOG0982|consen 293 REASLEKENLQM--RDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKE 370 (502)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333332 33332 344455555555556666666666665555333 3333334443 2333457788887777776
Q ss_pred HHHH
Q psy588 325 NTLE 328 (903)
Q Consensus 325 ell~ 328 (903)
.+++
T Consensus 371 atqE 374 (502)
T KOG0982|consen 371 ATQE 374 (502)
T ss_pred HHHH
Confidence 6653
No 83
>KOG4807|consensus
Probab=81.71 E-value=46 Score=38.90 Aligned_cols=150 Identities=19% Similarity=0.243 Sum_probs=81.6
Q ss_pred hhHhhH-----HHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Q psy588 203 DRLLSR-----VEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQD------TERKL 271 (903)
Q Consensus 203 DrLLSR-----IE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeE------lERsL 271 (903)
|+||.. +.+.|++-. -.-++|..+|.+.+ -=+.--++|||.+.|.+++++|--+ -+++|
T Consensus 373 drLLAEETAATiSAIEAMKn-----AhrEEmeRELeKsq-----SvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCL 442 (593)
T KOG4807|consen 373 DRLLAEETAATISAIEAMKN-----AHREEMERELEKSQ-----SVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCL 442 (593)
T ss_pred HhhhhhhhhhhhHHHHHHHH-----HHHHHHHHHHHhhh-----ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666653 445555543 34566666665544 3344568999999999888877432 24444
Q ss_pred Hhh------HHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHhhhhh--------------h--c--hHHHHHhhhHhHH
Q psy588 272 VNI------ENECSNLQE---LLDRNRDELEEIIKKYQDQVTKNKEF--------------E--S--TIDQLLNSNQEKS 324 (903)
Q Consensus 272 ~~s------E~EC~~LKe---q~E~Lq~EL~EL~~K~sEqvt~~~~k--------------E--S--~~~~L~~~~qEKq 324 (903)
.+. |.|-+.||. ....|..-.++|.....+.+++++.+ + + +...|+-.+.|-|
T Consensus 443 EnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQ 522 (593)
T KOG4807|consen 443 ENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQ 522 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHH
Confidence 432 233333321 11222222334444444455544433 1 1 4555566677777
Q ss_pred HHHHHHHHH--HHhhhccccccccccccccccccceeeccccchhh
Q psy588 325 NTLEKLQYE--TLQAQKQLDAFTLKDNLMHDKLKNYYMNFHIIKEK 368 (903)
Q Consensus 325 ell~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 368 (903)
=|.++|+-+ .++--.+++.| .+||.+.+|+--++|+-|
T Consensus 523 YLKqEissLkDELQtalrDKky------aSdKYkDiYtELSiaKak 562 (593)
T KOG4807|consen 523 YLKQEISSLKDELQTALRDKKY------ASDKYKDIYTELSIAKAK 562 (593)
T ss_pred HHHHHHHHHHHHHHHHHhhhhc------cccchhHHHHHHHHHHHh
Confidence 775555432 22233334433 689999999988777655
No 84
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.51 E-value=15 Score=36.01 Aligned_cols=70 Identities=23% Similarity=0.282 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHHHHHHH
Q psy588 262 QKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQ 331 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqell~~v~ 331 (903)
+-++.++..+...|.|++.+|.++..+..+-+.+.+......+.+....+....+..++.+.+++.++.+
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777778888888888888777777777777666666666555666666666666654443
No 85
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.14 E-value=68 Score=33.57 Aligned_cols=70 Identities=17% Similarity=0.423 Sum_probs=29.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q psy588 229 RDEIKLLHRDKSTYENQLKEVMKK----MLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKK 298 (903)
Q Consensus 229 RkeLlqLqeEK~~YE~~AKESLrK----lLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K 298 (903)
+..+.++..++...+....+.|.- ..........+++..++.+.....++..+++..+..+..+.++...
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~ 99 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRES 99 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554441 2222222223333333334444444444444444444444443333
No 86
>KOG0980|consensus
Probab=80.88 E-value=1.8e+02 Score=37.31 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=20.5
Q ss_pred cccccCCCchhHhHHHHHHHHHHHHHHHHHHHhHHH
Q psy588 409 NESESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQ 444 (903)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (903)
|.+.-+-.++.+--++|....++....++.=+.+|.
T Consensus 671 na~a~~~ta~~e~~d~v~~l~k~~~~~a~~~~~~l~ 706 (980)
T KOG0980|consen 671 NAKATAYTASPEGSDRVNDLCKKCGREALAFLVSLS 706 (980)
T ss_pred cchhheeccCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455666666666666666666665555543
No 87
>PF15556 Zwint: ZW10 interactor
Probab=80.88 E-value=89 Score=33.93 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=66.2
Q ss_pred ChhHHHHHHHHHh----hhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q psy588 224 TDDKLRDEIKLLH----RDKSTYENQ---LKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEII 296 (903)
Q Consensus 224 tEDklRkeLlqLq----eEK~~YE~~---AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~ 296 (903)
++|.-|....... +=|.+|+.- -|-+|-.+|-.--||..|-.+++.++......-....+.+...+..|+...
T Consensus 53 SedtsRqkai~aKeQWKeLKAtYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwqlqQ 132 (252)
T PF15556_consen 53 SEDTSRQKAIEAKEQWKELKATYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQLQQ 132 (252)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5565555555444 347788764 345555666656677788888888888777766666666777778888888
Q ss_pred HHHHHHHHhhhhhhchHHHHHhhhHhHHHHHHHHHHHHHhhh
Q psy588 297 KKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQ 338 (903)
Q Consensus 297 ~K~sEqvt~~~~kES~~~~L~~~~qEKqell~~v~~~~~~~~ 338 (903)
+||...++.. .. ..++......||-+-+-.+++++..+++
T Consensus 133 eK~LQ~Lae~-sA-Evrerq~~~qqeLe~l~qeL~~lkqQa~ 172 (252)
T PF15556_consen 133 EKHLQHLAEV-SA-EVRERQTGTQQELERLYQELGTLKQQAG 172 (252)
T ss_pred HHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776533320 00 0222223344444444444555554444
No 88
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=80.56 E-value=1.3e+02 Score=35.92 Aligned_cols=73 Identities=22% Similarity=0.355 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q psy588 228 LRDEIKLLHRDKSTYENQLKE----------VMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIK 297 (903)
Q Consensus 228 lRkeLlqLqeEK~~YE~~AKE----------SLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~ 297 (903)
.+++|++-..+|..+|...|. --.-.+|+|-...+++.+++++|..-|.|+.+|+.+ +-+++.++.
T Consensus 402 tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~l----kgelEkat~ 477 (527)
T PF15066_consen 402 TQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQL----KGELEKATT 477 (527)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHH
Confidence 345666666666666655443 223457778888899999999999999999888754 333444444
Q ss_pred HHHHHHH
Q psy588 298 KYQDQVT 304 (903)
Q Consensus 298 K~sEqvt 304 (903)
...++++
T Consensus 478 SALdlLk 484 (527)
T PF15066_consen 478 SALDLLK 484 (527)
T ss_pred HHHHHHH
Confidence 4444333
No 89
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=80.46 E-value=1.9e+02 Score=37.56 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=15.7
Q ss_pred HHHHHhHHHHhHHHhHhhhcccchhHHhH
Q psy588 606 LQSQLNDALDNIKKYKEEHSKMTMEIESL 634 (903)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (903)
+..+.......|.+|...-..+.++|.+.
T Consensus 983 l~e~~~~~~~~i~~f~~~l~~~~r~I~~~ 1011 (1201)
T PF12128_consen 983 LIEQGRNIGNDISNFYGVLEDFDRRIKSQ 1011 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44444445555556665555555555544
No 90
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.31 E-value=74 Score=33.37 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=57.8
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy588 224 TDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQV 303 (903)
Q Consensus 224 tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqv 303 (903)
|-.+.++++..|..+-..|+ +-|.+|+. +..++..++..+..++-|...+..++..++.|.+++..+|...+
T Consensus 63 pL~~a~~e~~eL~k~L~~y~-kdK~~L~~-------~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i 134 (201)
T PF13851_consen 63 PLKKAEEEVEELRKQLKNYE-KDKQSLQN-------LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAI 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777777766 34555544 34577788888889999999999999999999999999998855
Q ss_pred Hhhhhh
Q psy588 304 TKNKEF 309 (903)
Q Consensus 304 t~~~~k 309 (903)
-..+.+
T Consensus 135 ~evqQk 140 (201)
T PF13851_consen 135 QEVQQK 140 (201)
T ss_pred HHHHHH
Confidence 554444
No 91
>KOG0994|consensus
Probab=80.17 E-value=1.5e+02 Score=39.01 Aligned_cols=70 Identities=9% Similarity=0.082 Sum_probs=42.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy588 231 EIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQ 300 (903)
Q Consensus 231 eLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~s 300 (903)
.+++.+++-..-+..|+.++|.+-..--.|.+.|..++....-+|.-...--+++..|..-+++|..++.
T Consensus 1567 ~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1567 DVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666777777777666666666666666666666665555555555555555555554443
No 92
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=79.99 E-value=87 Score=41.18 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=5.1
Q ss_pred ceEEee-CCCc
Q psy588 804 TLIRIR-KPKP 813 (903)
Q Consensus 804 ~~~~~~-~~~~ 813 (903)
+-++|. +|+|
T Consensus 1149 ~~~~l~w~~~~ 1159 (1353)
T TIGR02680 1149 VRLRLQWKLLP 1159 (1353)
T ss_pred ceEEEEEeeCC
Confidence 556654 3444
No 93
>KOG0978|consensus
Probab=79.85 E-value=1.5e+02 Score=36.96 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHh--hchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 187 DLKKAADVSWKA--LIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKC 264 (903)
Q Consensus 187 ~Tk~AAE~sWqa--LIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKL 264 (903)
....++..-|.- .++.|...++++.++.+...+.+ ....++-.+.+|+-=...|+. ..+-..++++++-++.++-
T Consensus 408 ~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk--~~~~~k~ll~e~~t~gsA~ed-~Qeqn~kL~~el~ekdd~n 484 (698)
T KOG0978|consen 408 RLKALDKEERSEIRKQALDDAERQIRQVEELSEELQK--KEKNFKCLLSEMETIGSAFED-MQEQNQKLLQELREKDDKN 484 (698)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHH
Confidence 333344555543 35778888888888888887766 556666778888888888888 6788888888888888887
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 265 QDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 265 eElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
-.+=.....+-++.-.|++.+..+......+...-+-++..
T Consensus 485 fklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~ 525 (698)
T KOG0978|consen 485 FKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELK 525 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777776665554444
No 94
>KOG0976|consensus
Probab=79.58 E-value=1.2e+02 Score=38.35 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q psy588 260 VMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEF 309 (903)
Q Consensus 260 A~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~k 309 (903)
|+.|+-.+-.-+.-++..|.+++-+++-.+--.+-..+.+++.+...+.+
T Consensus 422 a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l 471 (1265)
T KOG0976|consen 422 ALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRAL 471 (1265)
T ss_pred HHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence 44455556666667777777777777777666666666666655554444
No 95
>KOG0978|consensus
Probab=79.51 E-value=1.3e+02 Score=37.47 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=71.0
Q ss_pred hhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy588 198 ALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEV---MKKMLAEKVEVMQKCQDTERKLVNI 274 (903)
Q Consensus 198 aLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKES---LrKlLQEKlEA~qKLeElERsL~~s 274 (903)
+.-..|.+.-++..||-|+..|+.+.. ++.+++-.+..-+..|...|-++ +..+-.+.-....+++++++.+..+
T Consensus 515 l~~~~~~~~~~i~~leeq~~~lt~~~~--~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~ 592 (698)
T KOG0978|consen 515 LKASVDKLELKIGKLEEQERGLTSNES--KLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAEL 592 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334468888899999999999887443 33345555555555555554444 4444455555667888888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 275 ENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 275 E~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
+.|....+.....+++++..+..++..
T Consensus 593 ~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 593 ELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888777665
No 96
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.19 E-value=71 Score=34.50 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy588 227 KLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKY 299 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~ 299 (903)
++++++-.|..||..+. |.||-+.+.....+.-+.+++......++....+.+.|..++.+..++...|
T Consensus 36 e~~kE~~~L~~Er~~h~----eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHV----EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777754 5677788888877777777787777788888888888888888888887765
No 97
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=79.06 E-value=31 Score=38.87 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhh
Q psy588 167 ALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDK 239 (903)
Q Consensus 167 ALqREqmLEqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK 239 (903)
++.|-..|+.+|..|+.+++.... +-.........--|+..+..|++||..+.. ..-|.+...|..|..+-
T Consensus 207 ~la~~a~LE~RL~~LE~~lG~~~~-~~~~l~~~~~~~~l~~~l~~L~~~lslL~~-~~Ld~i~~rl~~L~~~~ 277 (388)
T PF04912_consen 207 QLARAADLEKRLARLESALGIDSD-KMSSLDSDTSSSPLLPALNELERQLSLLDP-AKLDSIERRLKSLLSEL 277 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcc-ccccccccCCcchHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHH
Confidence 355666688888889888886111 011111111233566666666777666632 33455655555555433
No 98
>KOG2129|consensus
Probab=78.48 E-value=1.4e+02 Score=35.42 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=26.8
Q ss_pred hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHH
Q psy588 203 DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTY 242 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~Y 242 (903)
..|..+|+.|||.--. |-.+-+.+|.+.++|+.--.+=
T Consensus 161 nKlm~ki~Klen~t~~--kq~~leQLRre~V~lentlEQE 198 (552)
T KOG2129|consen 161 NKLMNKIRKLENKTLL--KQNTLEQLRREAVQLENTLEQE 198 (552)
T ss_pred HHHHHHHHHhhhhhHH--hhhhHHHHHHHHHHHhhHHHHH
Confidence 5678888888886533 4457788888888887544443
No 99
>PRK09039 hypothetical protein; Validated
Probab=78.10 E-value=1.3e+02 Score=34.05 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=25.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q psy588 266 DTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEF 309 (903)
Q Consensus 266 ElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~k 309 (903)
+..+....+..+...||+++..++.++..+.++-.++..+...+
T Consensus 134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666666666555544443333
No 100
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=77.85 E-value=1.5e+02 Score=34.87 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=25.2
Q ss_pred HHHHhhhHhHHHHHHHHHHHHHhhhccccccccccccc
Q psy588 314 DQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLM 351 (903)
Q Consensus 314 ~~L~~~~qEKqell~~v~~~~~~~~~~~~~~~~~~~~~ 351 (903)
..|..+.+|+++++++++.+-...++++..+..+...+
T Consensus 199 ~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L 236 (420)
T COG4942 199 AKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRL 236 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34556667777777777777777666666666655553
No 101
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=77.49 E-value=1.3e+02 Score=34.05 Aligned_cols=145 Identities=20% Similarity=0.239 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh----hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHH
Q psy588 173 MLKNKLSKLQHIVIDLKKAADVSW-KALIQE----DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLK 247 (903)
Q Consensus 173 mLEqKLaiLQeIL~~Tk~AAE~sW-qaLIdE----DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AK 247 (903)
..+.+...|+.-+...+.++-... ++=..| -.|+.||..|.+.=..+.. .++.+-.-..+..-
T Consensus 45 ~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~------------~~e~EEE~ltn~L~ 112 (310)
T PF09755_consen 45 TEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLAL------------KYEQEEEFLTNDLS 112 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 345556666666666665533322 122233 3344444444333322211 12221122222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-hhhhhc----hHHHHHhhhH
Q psy588 248 EVMKKMLAEKVEVMQKCQDTERK-LVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK-NKEFES----TIDQLLNSNQ 321 (903)
Q Consensus 248 ESLrKlLQEKlEA~qKLeElERs-L~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~-~~~kES----~~~~L~~~~q 321 (903)
-=|.++-.||++++.+|+.-+.. ...+...|..++..-...+.++..+...--+.++. .++.|. +--++..++.
T Consensus 113 rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~ 192 (310)
T PF09755_consen 113 RKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEA 192 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777643333 34445555555544444455555554432222222 233333 2334456666
Q ss_pred hHHHHHHH
Q psy588 322 EKSNTLEK 329 (903)
Q Consensus 322 EKqell~~ 329 (903)
||..|.++
T Consensus 193 eKr~Lq~~ 200 (310)
T PF09755_consen 193 EKRRLQEK 200 (310)
T ss_pred HHHHHHHH
Confidence 66666544
No 102
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=77.23 E-value=1e+02 Score=38.41 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=40.6
Q ss_pred cccccCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHh
Q psy588 146 SMLISSMPLEELYQLNTCIQEALQRE-NMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYS 220 (903)
Q Consensus 146 sgv~nEVpLKELyQLSqYLqEALqRE-qmLEqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~s 220 (903)
+.+..++++-++..|.+.|-.. .|| ..|-..|...|.-+..++.+- ...-.|+.-|-.+|.++.
T Consensus 256 ~DLfSEl~~~EiqKL~qQL~qv-e~EK~~L~~~L~e~Q~qLe~a~~al----------s~q~eki~~L~e~l~aL~ 320 (717)
T PF09730_consen 256 SDLFSELNLSEIQKLKQQLLQV-EREKSSLLSNLQESQKQLEHAQGAL----------SEQQEKINRLTEQLDALR 320 (717)
T ss_pred chhhhhcchHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHh
Confidence 3457888889999998887665 344 456667777777776555541 222345555666666653
No 103
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=76.93 E-value=70 Score=35.92 Aligned_cols=120 Identities=21% Similarity=0.215 Sum_probs=67.9
Q ss_pred hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQ 282 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LK 282 (903)
-+-|.||..||.||..+.| +-.+=+=+-...|......=||+-.||.+ ...+.|.+..+...|..+-
T Consensus 14 ~~aLqKIqelE~QldkLkK---------E~qQrQfQleSlEAaLqKQKqK~e~ek~e----~s~LkREnq~l~e~c~~le 80 (307)
T PF10481_consen 14 TRALQKIQELEQQLDKLKK---------ERQQRQFQLESLEAALQKQKQKVEEEKNE----YSALKRENQSLMESCENLE 80 (307)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHhHHHHHHHHHHHHHHHHHHhhh----hhhhhhhhhhHHHHHHHHH
Confidence 5778999999999988643 22222222233333333333444444433 3456666666666676666
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHHHHHHHHHHHhhh
Q psy588 283 ELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQ 338 (903)
Q Consensus 283 eq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqell~~v~~~~~~~~ 338 (903)
..-+.+..+++--.....-++. -+.+-+.+++.++||-..+..++|--|.-++
T Consensus 81 k~rqKlshdlq~Ke~qv~~lEg---Ql~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 81 KTRQKLSHDLQVKESQVNFLEG---QLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHhhHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666555555433333222222 2334666888999998888666665555443
No 104
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=76.41 E-value=1.1e+02 Score=37.20 Aligned_cols=27 Identities=4% Similarity=0.005 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy588 273 NIENECSNLQELLDRNRDELEEIIKKY 299 (903)
Q Consensus 273 ~sE~EC~~LKeq~E~Lq~EL~EL~~K~ 299 (903)
..+.+....+.+.+.++.+++++.++.
T Consensus 342 ~~~~~~~~a~~~~~~L~~~l~~~~~~~ 368 (754)
T TIGR01005 342 SLLMQADAAQARESQLVSDVNQLKAAS 368 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 105
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=76.07 E-value=1.8e+02 Score=34.75 Aligned_cols=128 Identities=14% Similarity=0.228 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc------hhhhHhhHHHHHHHHHHHHhc---cCChhHHHHHHHHHhhhhHH-HH
Q psy588 174 LKNKLSKLQHIVIDLKKAADVSWKALI------QEDRLLSRVEFLESQLAAYSK---SFTDDKLRDEIKLLHRDKST-YE 243 (903)
Q Consensus 174 LEqKLaiLQeIL~~Tk~AAE~sWqaLI------dEDrLLSRIE~LEnQLq~~sK---N~tEDklRkeLlqLqeEK~~-YE 243 (903)
++.=+..|+..||.-...-..|+..|. +++.+-.++..|..++..+.. ++.-+.++..+..+.++... |.
T Consensus 217 iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd 296 (569)
T PRK04778 217 IPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYD 296 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 333445556656554444455665554 446678888888888888444 45556666666666655433 33
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHH----------HHHhHHHHHHHHHHHHH
Q psy588 244 NQLKEVMKKMLAEK--VEVMQKCQDTERKLVNIENECSNLQEL----------LDRNRDELEEIIKKYQD 301 (903)
Q Consensus 244 ~~AKESLrKlLQEK--lEA~qKLeElERsL~~sE~EC~~LKeq----------~E~Lq~EL~EL~~K~sE 301 (903)
..-||...+-.-+| -.....+..++..+..+..|..+++.. ...++.++.++.+.+..
T Consensus 297 ~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~ 366 (569)
T PRK04778 297 ILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDE 366 (569)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333222222 223444455555555555666666655 44555556666655554
No 106
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.80 E-value=36 Score=41.92 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=7.1
Q ss_pred hhhhhccccccc
Q psy588 366 KEKMTNIKNELG 377 (903)
Q Consensus 366 ~~k~~~~~~~~~ 377 (903)
-.++++|++.+|
T Consensus 705 v~~ik~i~~~~~ 716 (717)
T PF10168_consen 705 VKQIKNIKKIVN 716 (717)
T ss_pred HHHHHHHHHhhC
Confidence 445666666655
No 107
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=75.65 E-value=80 Score=36.10 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy588 228 LRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNK 307 (903)
Q Consensus 228 lRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~ 307 (903)
+..++.+..+...+.|..-=.-|.-+++|=-.+..+|.+++..+..+..-+..+...+..+.++|+++...-.++-+.+-
T Consensus 246 l~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mt 325 (359)
T PF10498_consen 246 LQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMT 325 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44455555555556666666666666666666666666666666666665555555555555555555554444333211
Q ss_pred hhh---chHHHHHhhhHhHHHH
Q psy588 308 EFE---STIDQLLNSNQEKSNT 326 (903)
Q Consensus 308 ~kE---S~~~~L~~~~qEKqel 326 (903)
.-- .+|+.+..+++|-.++
T Consensus 326 D~sPlv~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 326 DGSPLVKIKQALTKLKQEIKQM 347 (359)
T ss_pred CCCHHHHHHHHHHHHHHHHHHh
Confidence 111 1555666666666555
No 108
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=75.27 E-value=1.3e+02 Score=32.87 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 252 KMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 252 KlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
.+-.|.-.|.++...++..+..+.++...+......++.++..+...+.+
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e 142 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAE 142 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555544444444444444444444444443333
No 109
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=75.18 E-value=1.4e+02 Score=36.42 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=7.8
Q ss_pred hHhhHHHHHHHHHHHH
Q psy588 204 RLLSRVEFLESQLAAY 219 (903)
Q Consensus 204 rLLSRIE~LEnQLq~~ 219 (903)
.|.++++.++.++..+
T Consensus 339 ~l~~~i~~~~~~~~~l 354 (594)
T PF05667_consen 339 ELESQIEELEAEIKML 354 (594)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555544
No 110
>KOG2129|consensus
Probab=75.16 E-value=97 Score=36.64 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=10.8
Q ss_pred hhHhhHHHHHHHHHHHHhc
Q psy588 203 DRLLSRVEFLESQLAAYSK 221 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sK 221 (903)
.+|.-|+..||..-..+.+
T Consensus 204 N~LwKrmdkLe~ekr~Lq~ 222 (552)
T KOG2129|consen 204 NSLWKRMDKLEQEKRYLQK 222 (552)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556666666666555443
No 111
>KOG1265|consensus
Probab=74.24 E-value=1.3e+02 Score=38.58 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHH
Q psy588 164 IQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYE 243 (903)
Q Consensus 164 LqEALqREqmLEqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE 243 (903)
-.+...|+..+++-+..|.+++.. +-++|++++. ..-|+-.++|.+-++.|..=.
T Consensus 1051 ~~e~e~k~~hl~~~~~~l~kl~~e-----------------------aq~~Q~k~LK--~~~e~e~kElk~~l~kkr~e~ 1105 (1189)
T KOG1265|consen 1051 EEEFELKEEHLKEQISLLRKLLSE-----------------------AQTNQTKALK--ESLEKETKELKKKLDKKRMED 1105 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666666666665543 2234444431 123344455555555554422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy588 244 NQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVT 304 (903)
Q Consensus 244 ~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt 304 (903)
.++ .+.+..|.+.+.+..++-++.. +.=++..|++.+......++|.++|.+...
T Consensus 1106 ik~----~~~~kdK~e~er~~rE~n~s~i--~~~V~e~krL~~~~~k~~e~L~k~~~~~le 1160 (1189)
T KOG1265|consen 1106 IKV----DKVIKDKAERERRKRELNSSNI--KEFVEERKRLAEKQSKRQEQLVKKHLEVLE 1160 (1189)
T ss_pred hhh----ccccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 5677777777777776655543 333333444444444555555555555443
No 112
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=74.15 E-value=1.3e+02 Score=32.21 Aligned_cols=56 Identities=11% Similarity=0.224 Sum_probs=43.2
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy588 224 TDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECS 279 (903)
Q Consensus 224 tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~ 279 (903)
--+++.+.+.+|..++.+=...++..+++++.||-.+..-|..+|++...+-.-..
T Consensus 45 i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~rye 100 (207)
T PF05010_consen 45 IMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYE 100 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34566778888888887778888889999999999999888888887764443333
No 113
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=73.89 E-value=49 Score=35.19 Aligned_cols=80 Identities=10% Similarity=0.147 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHH
Q psy588 247 KEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNT 326 (903)
Q Consensus 247 KESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqel 326 (903)
.+.=.++..|-.++..++..++.++.. ...+.+.+++++.-...+-+.+....++ ...++.|.|-|
T Consensus 35 ee~na~L~~e~~~L~~q~~s~Qqal~~----aK~l~eEledLk~~~~~lEE~~~~L~aq----------~rqlEkE~q~L 100 (193)
T PF14662_consen 35 EEGNAQLAEEITDLRKQLKSLQQALQK----AKALEEELEDLKTLAKSLEEENRSLLAQ----------ARQLEKEQQSL 100 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 344455555556666666666555543 3334444444444444444444444443 33445678888
Q ss_pred HHHHHHHHHhhhcc
Q psy588 327 LEKLQYETLQAQKQ 340 (903)
Q Consensus 327 l~~v~~~~~~~~~~ 340 (903)
.++|+.+|..+++-
T Consensus 101 ~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 101 VAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHhHH
Confidence 88888777776653
No 114
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=72.88 E-value=3.6 Score=30.34 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.7
Q ss_pred hhhHhhHHHHHHHHHHHHhcc
Q psy588 202 EDRLLSRVEFLESQLAAYSKS 222 (903)
Q Consensus 202 EDrLLSRIE~LEnQLq~~sKN 222 (903)
-++|.+||.-||+||..|..|
T Consensus 3 ~~rlr~rI~dLer~L~~C~~n 23 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECRRN 23 (23)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 489999999999999999764
No 115
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=72.68 E-value=3e+02 Score=35.86 Aligned_cols=17 Identities=24% Similarity=0.581 Sum_probs=10.1
Q ss_pred HHHHHHHhhhhHHHHHH
Q psy588 229 RDEIKLLHRDKSTYENQ 245 (903)
Q Consensus 229 RkeLlqLqeEK~~YE~~ 245 (903)
+.+|-.++.++..|+..
T Consensus 326 ~~~L~~i~~~~~~ye~~ 342 (1201)
T PF12128_consen 326 KSELDEIEQQKKDYEDA 342 (1201)
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 34566666666666654
No 116
>KOG0250|consensus
Probab=72.09 E-value=88 Score=40.41 Aligned_cols=131 Identities=20% Similarity=0.251 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHH
Q psy588 156 ELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLL 235 (903)
Q Consensus 156 ELyQLSqYLqEALqREqmLEqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqL 235 (903)
.+-....-+.++.++=.-.+.+++.+ ...+.-.....-.+.-+-|-+.+....++.+..-+.. .-.+.|+.+-.+
T Consensus 303 ki~~~~~k~~~~r~k~teiea~i~~~---~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n--~i~~~k~~~d~l 377 (1074)
T KOG0250|consen 303 KIEEKQGKIEEARQKLTEIEAKIGEL---KDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIEN--SIRKLKKEVDRL 377 (1074)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 34444444555555544455554444 3333222222222333346666666666666665544 233445666666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 236 HRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 236 qeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
..+..+|+... -+.+-.++.+.+.++..+++.-+.++. +.+.|..+++++..++.+
T Consensus 378 ~k~I~~~~~~~---~~~~~~~~~e~e~k~~~L~~evek~e~-------~~~~L~~e~~~~~~~~~~ 433 (1074)
T KOG0250|consen 378 EKQIADLEKQT---NNELGSELEERENKLEQLKKEVEKLEE-------QINSLREELNEVKEKAKE 433 (1074)
T ss_pred HHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 66666655544 233333344444555555544444444 444444555555555444
No 117
>KOG0994|consensus
Probab=71.98 E-value=3.4e+02 Score=36.13 Aligned_cols=105 Identities=12% Similarity=0.171 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHhHHHHHHHH
Q psy588 227 KLRDEIKLLHRDKSTYENQLKEVMKKML---AEKVEVMQKCQDTERKLVNI-------ENECSNLQELLDRNRDELEEII 296 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE~~AKESLrKlL---QEKlEA~qKLeElERsL~~s-------E~EC~~LKeq~E~Lq~EL~EL~ 296 (903)
++...|.+|.....+--..||.+.+-+- ++-+.|++.+..++..++.+ ......-|++.++|+++-+.|.
T Consensus 1623 eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll 1702 (1758)
T KOG0994|consen 1623 ELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLL 1702 (1758)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 3444444444333333334444444333 22333344444444333332 2333444666777777777666
Q ss_pred HHHHHHHHhhhhhh----chHHHHHhhhHhHHHHHHHHH
Q psy588 297 KKYQDQVTKNKEFE----STIDQLLNSNQEKSNTLEKLQ 331 (903)
Q Consensus 297 ~K~sEqvt~~~~kE----S~~~~L~~~~qEKqell~~v~ 331 (903)
..-.+....++.+| +-...|+...+|--.|.++|+
T Consensus 1703 ~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1703 GQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVE 1741 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Confidence 66665555554444 222333344444444444443
No 118
>KOG4674|consensus
Probab=70.76 E-value=4.2e+02 Score=36.63 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=92.1
Q ss_pred hHhhHHHHHHHHHHHHhcc--CChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Q psy588 204 RLLSRVEFLESQLAAYSKS--FTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVN-------- 273 (903)
Q Consensus 204 rLLSRIE~LEnQLq~~sKN--~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~-------- 273 (903)
.|..++..|..++..-.+. -.-..+.+++.-++++...|..++.++..++-.=|.+.......+..+..+
T Consensus 976 ~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~h 1055 (1822)
T KOG4674|consen 976 ELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQH 1055 (1822)
T ss_pred HHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555433221 123457788888999999999999998888776666655554444433333
Q ss_pred --hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhc-hHHHHHhhhHhHHHHHHHHHHHHHhhhcc
Q psy588 274 --IENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFES-TIDQLLNSNQEKSNTLEKLQYETLQAQKQ 340 (903)
Q Consensus 274 --sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES-~~~~L~~~~qEKqell~~v~~~~~~~~~~ 340 (903)
+-+++..+|+.+...+.++..|......++..|...+. ..++-..+++|.....+++..+-.++.+-
T Consensus 1056 a~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslL 1125 (1822)
T KOG4674|consen 1056 ADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLL 1125 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777777777777777777777777764 66677788888888888877766665443
No 119
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.76 E-value=52 Score=34.89 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=42.9
Q ss_pred hhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy588 202 EDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNL 281 (903)
Q Consensus 202 EDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~L 281 (903)
.-.+..++..||+||.... .++..+..+ ..++..+++..+..+++....|
T Consensus 88 ~p~~~~rlp~le~el~~l~---------~~l~~~~~~---------------------~~~~~~~l~~~~~~~~~~~~~L 137 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLT---------DKLNNIDNT---------------------WNQRTAEMQQKVAQSDSVINGL 137 (206)
T ss_pred CccHHHHHHHHHHHHHHHH---------HHHHHHHhH---------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777888888887753 233333322 2255555666666666666667
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q psy588 282 QELLDRNRDELEEIIKKYQDQ 302 (903)
Q Consensus 282 Keq~E~Lq~EL~EL~~K~sEq 302 (903)
+++++.+++++..+.++....
T Consensus 138 ~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 138 KEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776666654443
No 120
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.43 E-value=21 Score=37.75 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=4.3
Q ss_pred cCCCCEEE
Q psy588 100 LCSGDVVQ 107 (903)
Q Consensus 100 L~dGDIIr 107 (903)
|..|+.++
T Consensus 50 l~~G~~v~ 57 (206)
T PRK10884 50 LNAGEEVT 57 (206)
T ss_pred EcCCCEEE
Confidence 55555554
No 121
>PRK04863 mukB cell division protein MukB; Provisional
Probab=70.12 E-value=4e+02 Score=36.10 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=47.2
Q ss_pred hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKE---VMKKMLAEKVEVMQKCQDTERKLVNIENECS 279 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKE---SLrKlLQEKlEA~qKLeElERsL~~sE~EC~ 279 (903)
..|..+++.|+.|.+...+-. .+.++......+...|+...++ .++...++--++..++.+++..+..++.+..
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyl---eL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLe 393 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHL---NLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVD 393 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777787777765421 1122323333444444333222 2222222233344445555566666666666
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q psy588 280 NLQELLDRNRDELEEIIKK 298 (903)
Q Consensus 280 ~LKeq~E~Lq~EL~EL~~K 298 (903)
.++..+..++.+++.+..+
T Consensus 394 eLqeqLaelqqel~elQ~e 412 (1486)
T PRK04863 394 ELKSQLADYQQALDVQQTR 412 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666655555555554
No 122
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=69.97 E-value=1.1e+02 Score=36.91 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy588 250 MKKMLAEKVEVMQKCQDTERKLVNI--ENECSNLQELLDRNRDELEEIIKKYQDQ 302 (903)
Q Consensus 250 LrKlLQEKlEA~qKLeElERsL~~s--E~EC~~LKeq~E~Lq~EL~EL~~K~sEq 302 (903)
+.++..+.-+.+.++.++++.+..+ +.+...+.+.++.++.++.++..++...
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~ 447 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEEL 447 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555543 3344555555555555555555444443
No 123
>KOG0972|consensus
Probab=69.55 E-value=59 Score=36.84 Aligned_cols=109 Identities=19% Similarity=0.247 Sum_probs=75.2
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHH
Q psy588 214 SQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKE---VMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRD 290 (903)
Q Consensus 214 nQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKE---SLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~ 290 (903)
-||.+.-|--.+ .-|=.|.+|+.=+.+-+...++ -|.|++.|=.-+..|++.-|++|. +++.-+-.++-.++.
T Consensus 212 PQLKVt~k~Dak-DWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lN---nqL~~l~q~fr~a~~ 287 (384)
T KOG0972|consen 212 PQLKVTLKQDAK-DWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLN---NQLASLMQKFRRATD 287 (384)
T ss_pred hhheehhccccH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 466665553333 3467899999888888887655 499999999999999999998887 567777888888888
Q ss_pred HHHHHHHHHHHHHH-hhhhhhchHHHHHhhhHhHHHH
Q psy588 291 ELEEIIKKYQDQVT-KNKEFESTIDQLLNSNQEKSNT 326 (903)
Q Consensus 291 EL~EL~~K~sEqvt-~~~~kES~~~~L~~~~qEKqel 326 (903)
+++++..+|...-- .-.+-+-+.+.+..+++-||+.
T Consensus 288 ~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~Kqem 324 (384)
T KOG0972|consen 288 TLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEM 324 (384)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888876211 1111222444444445545544
No 124
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=69.54 E-value=76 Score=39.45 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q psy588 245 QLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKK 298 (903)
Q Consensus 245 ~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K 298 (903)
..-+.|.++.+++.+++++.+++++.+..++..-..+++..+.++.+..++.++
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~ 565 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLE 565 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666555555555555555555444444433
No 125
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=69.52 E-value=1.3e+02 Score=37.85 Aligned_cols=56 Identities=27% Similarity=0.286 Sum_probs=31.2
Q ss_pred HHhhchh-hhHhhHHHHHHHHHHHHhccC---ChhHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy588 196 WKALIQE-DRLLSRVEFLESQLAAYSKSF---TDDKLRDEIKLLHRDKSTYENQLKEVMK 251 (903)
Q Consensus 196 WqaLIdE-DrLLSRIE~LEnQLq~~sKN~---tEDklRkeLlqLqeEK~~YE~~AKESLr 251 (903)
++-++.| -.|.+|++.|..||.--++.- .....-=+|..|+-=-..+|.+.+|+++
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k 448 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLK 448 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444 678889999999998743311 1112222555555555555555555553
No 126
>KOG4593|consensus
Probab=68.64 E-value=3.1e+02 Score=34.34 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=42.8
Q ss_pred hHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy588 204 RLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQE 283 (903)
Q Consensus 204 rLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKe 283 (903)
.++-++..+..++.. -++.+++++....++...-....-+.++-.-.+=.++.+-.....-+++.++.+|.+.+.
T Consensus 105 ~~~~~l~~~q~a~~~-----~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~ 179 (716)
T KOG4593|consen 105 KLLTRLRQLQEALKG-----QEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEM 179 (716)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443 234444455544444333333333322222222233333333445555556666665555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHh
Q psy588 284 LLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 284 q~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
.+.++-..+......|..+..+
T Consensus 180 ~~~~~~s~l~~~eke~~~~~~q 201 (716)
T KOG4593|consen 180 RAKRLHSELQNEEKELDRQHKQ 201 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444444444444444
No 127
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=68.45 E-value=1.2e+02 Score=29.66 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=15.1
Q ss_pred HHHHHhhchhhhHhhHHHHHHHHHHHH
Q psy588 193 DVSWKALIQEDRLLSRVEFLESQLAAY 219 (903)
Q Consensus 193 E~sWqaLIdEDrLLSRIE~LEnQLq~~ 219 (903)
..-|.++..-|+=...-+.|+.++...
T Consensus 38 n~i~~Ll~~~~r~~~~~e~l~~~~~~l 64 (151)
T PF11559_consen 38 NCIYDLLQQRDRDMEQREDLSDKLRRL 64 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566566666666665553
No 128
>KOG0977|consensus
Probab=67.75 E-value=2.9e+02 Score=33.67 Aligned_cols=169 Identities=20% Similarity=0.217 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccC-----ChhHHH
Q psy588 155 EELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSF-----TDDKLR 229 (903)
Q Consensus 155 KELyQLSqYLqEALqREqmLEqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~-----tEDklR 229 (903)
+||-+|+.-|...+.|=..|++-=..|+.=+..++......- . .+ -.++|..|..+.+-+ .--+++
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~t-s-----~i---k~~ye~El~~ar~~l~e~~~~ra~~e 112 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRET-S-----GI---KAKYEAELATARKLLDETARERAKLE 112 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-c-----ch---hHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 588888887777777766666655555444433333211100 0 00 011222222222111 122455
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q psy588 230 DEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEF 309 (903)
Q Consensus 230 keLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~k 309 (903)
.++-++.+|-..|..++.++.+ +...+..++-+.+..|..++.|...++.....+..++..|...-...-..++..
T Consensus 113 ~ei~kl~~e~~elr~~~~~~~k----~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 113 IEITKLREELKELRKKLEKAEK----ERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH----HHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 5666666666665555554422 223333444444555555555555555555555555555444322221111111
Q ss_pred hc-hHH---HHHhhhHhHHHHHHHHHHHHHh
Q psy588 310 ES-TID---QLLNSNQEKSNTLEKLQYETLQ 336 (903)
Q Consensus 310 ES-~~~---~L~~~~qEKqell~~v~~~~~~ 336 (903)
-+ +.+ ..-..+...|.|+++|......
T Consensus 189 r~~ld~Etllr~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 189 RKQLDDETLLRVDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 11 001 1123455566676666655443
No 129
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=67.28 E-value=2.3e+02 Score=33.36 Aligned_cols=80 Identities=25% Similarity=0.233 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy588 172 NMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMK 251 (903)
Q Consensus 172 qmLEqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLr 251 (903)
..|-+|+.-||.++..++. |-+-++..-...||..+.+ --+.++++|.+|.+.-....-.||..|.
T Consensus 216 d~Ll~kVdDLQD~VE~LRk------------DV~~RgvRp~~~qle~v~k--di~~a~~~L~~m~~~i~~~kp~WkKiWE 281 (424)
T PF03915_consen 216 DRLLTKVDDLQDLVEDLRK------------DVVQRGVRPSPKQLETVAK--DISRASKELKKMKEYIKTEKPIWKKIWE 281 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHH-----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHcCCcCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 5566677777777765544 4455556666666666655 3345667888888888887777777777
Q ss_pred HHHHHHHHHHHHHH
Q psy588 252 KMLAEKVEVMQKCQ 265 (903)
Q Consensus 252 KlLQEKlEA~qKLe 265 (903)
+-|+-=|+-.+-|.
T Consensus 282 ~EL~~V~eEQqfL~ 295 (424)
T PF03915_consen 282 SELQKVCEEQQFLK 295 (424)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77764444444444
No 130
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=66.81 E-value=1.7e+02 Score=34.51 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=9.8
Q ss_pred hhHhhHHHHHHHHHHHH
Q psy588 203 DRLLSRVEFLESQLAAY 219 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~ 219 (903)
.....++..|..+|..+
T Consensus 254 ~~a~~~i~~L~~~l~~l 270 (582)
T PF09731_consen 254 AHAKERIDALQKELAEL 270 (582)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666666666554
No 131
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=66.67 E-value=85 Score=34.97 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHH
Q psy588 227 KLRDEIKLLHRDKSTYENQLK 247 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE~~AK 247 (903)
.+++++.++..++..|..-.+
T Consensus 13 ~l~~~~~~~~~E~~~Y~~fL~ 33 (314)
T PF04111_consen 13 QLDKQLEQAEKERDTYQEFLK 33 (314)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666655443
No 132
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=65.85 E-value=2e+02 Score=35.83 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy588 276 NECSNLQELLDRNRDELEEIIKKYQDQV 303 (903)
Q Consensus 276 ~EC~~LKeq~E~Lq~EL~EL~~K~sEqv 303 (903)
+|+..++.++..++..++++..+...|.
T Consensus 639 ~EL~~~~~~l~~l~~si~~lk~k~~~Q~ 666 (717)
T PF10168_consen 639 KELERMKDQLQDLKASIEQLKKKLDYQQ 666 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666655433
No 133
>PHA02562 46 endonuclease subunit; Provisional
Probab=65.53 E-value=2.6e+02 Score=32.33 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=8.1
Q ss_pred hccccccccc--cchhh
Q psy588 459 QSKYLHLDKI--GGLEL 473 (903)
Q Consensus 459 ~~~~~~~~~~--~~~~~ 473 (903)
..+++-+|-. |||..
T Consensus 496 ~~~~lilDEp~~~~ld~ 512 (562)
T PHA02562 496 DTNLLILDEVFDGALDA 512 (562)
T ss_pred CcCeEEEecccCcccch
Confidence 3456666654 44544
No 134
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=65.21 E-value=36 Score=38.11 Aligned_cols=89 Identities=22% Similarity=0.360 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHHHHHHHHHHHhhhccc
Q psy588 262 QKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQL 341 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqell~~v~~~~~~~~~~~ 341 (903)
.||.+.++.|...+-|...||.|+...+++|=| +.|+.=++++-.||. +.|-+.| |-=++|++...-+
T Consensus 75 akLkes~~~l~dRetEI~eLksQL~RMrEDWIE--EECHRVEAQLALKEA--------RkEIkQL--kQvieTmrssL~e 142 (305)
T PF15290_consen 75 AKLKESENRLHDRETEIDELKSQLARMREDWIE--EECHRVEAQLALKEA--------RKEIKQL--KQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------HHHHHHH--HHHHHHHHhhhch
Confidence 567788888888999999999999999999954 445554444444454 5566666 3346677766544
Q ss_pred ccccccccccccc-ccceeeccccchhhhhcc
Q psy588 342 DAFTLKDNLMHDK-LKNYYMNFHIIKEKMTNI 372 (903)
Q Consensus 342 ~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~~ 372 (903)
+ || .++||+.=.+-..||.++
T Consensus 143 k----------DkGiQKYFvDINiQN~KLEsL 164 (305)
T PF15290_consen 143 K----------DKGIQKYFVDINIQNKKLESL 164 (305)
T ss_pred h----------hhhHHHHHhhhhhhHhHHHHH
Confidence 3 33 556665443334555543
No 135
>KOG0249|consensus
Probab=65.06 E-value=1.1e+02 Score=38.43 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHH
Q psy588 260 VMQKCQDTERKLVNIENECSNLQELLD----RNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNT 326 (903)
Q Consensus 260 A~qKLeElERsL~~sE~EC~~LKeq~E----~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqel 326 (903)
++..-++++|+-...+.+-.+-+..+. .++..+++..+-......-.++.++.+.+++.++-+|..+
T Consensus 172 ~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl 242 (916)
T KOG0249|consen 172 LEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKL 242 (916)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555544433 3334444444434444444455556666666666555554
No 136
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=64.54 E-value=1.8e+02 Score=33.37 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=70.8
Q ss_pred chhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy588 200 IQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQ---LKEVMKKMLAEKVEVMQKCQDTERKLVNIEN 276 (903)
Q Consensus 200 IdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~---AKESLrKlLQEKlEA~qKLeElERsL~~sE~ 276 (903)
+|...-.--+|-.--||.+.-+.-. -.-|..+.+|..-+...+.. ++-.|.|+.++--.++.|++.-|+-+.+
T Consensus 191 vd~~eWklEvERV~PqLKv~~~~d~-kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~--- 266 (359)
T PF10498_consen 191 VDPAEWKLEVERVLPQLKVTIRADA-KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINN--- 266 (359)
T ss_pred CCHHHHHHHHHHHhhhheeeccCCc-chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3333334445555666666544333 45677888888777666654 5667999999999999999988888774
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy588 277 ECSNLQELLDRNRDELEEIIKKYQDQVT 304 (903)
Q Consensus 277 EC~~LKeq~E~Lq~EL~EL~~K~sEqvt 304 (903)
....+...|-..+.++.++..+|...-.
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~ 294 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASE 294 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667777788888888888888877433
No 137
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=64.33 E-value=1.1e+02 Score=38.27 Aligned_cols=43 Identities=21% Similarity=0.263 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHH
Q psy588 248 EVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRD 290 (903)
Q Consensus 248 ESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~ 290 (903)
+.+.++-+++.+.+++.+++++.+..++..-..+++..+.+++
T Consensus 520 ~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 562 (782)
T PRK00409 520 ELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQE 562 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333333333333333
No 138
>PLN03188 kinesin-12 family protein; Provisional
Probab=64.32 E-value=4.4e+02 Score=35.23 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=40.8
Q ss_pred HHHHHHHHHHH----HHHH-HHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 251 KKMLAEKVEVM----QKCQ-DTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 251 rKlLQEKlEA~----qKLe-ElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
-|.|.||++.+ .++. +|..++..+..=-++.=+||.+||+-.-+|.++|..
T Consensus 1077 ~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~ 1132 (1320)
T PLN03188 1077 SRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRR 1132 (1320)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666766544 4443 788889988888888899999999999999999876
No 139
>PF14992 TMCO5: TMCO5 family
Probab=64.14 E-value=1e+02 Score=34.45 Aligned_cols=93 Identities=15% Similarity=0.287 Sum_probs=58.5
Q ss_pred HHHHhhhhHHHHHHHHHH------HHHHHH--------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q psy588 232 IKLLHRDKSTYENQLKEV------MKKMLA--------EKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIK 297 (903)
Q Consensus 232 LlqLqeEK~~YE~~AKES------LrKlLQ--------EKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~ 297 (903)
+.+|+.++.+.|..++-. ||+-.- |+-.+-+.++..+..++.+..+|.....+..++..+.+++..
T Consensus 65 l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~ 144 (280)
T PF14992_consen 65 LQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQ 144 (280)
T ss_pred HHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666544 333332 344455777777777888888888877777777666666544
Q ss_pred HHHHHHHhhhhhhchHHHHHhhhHhHHHHH
Q psy588 298 KYQDQVTKNKEFESTIDQLLNSNQEKSNTL 327 (903)
Q Consensus 298 K~sEqvt~~~~kES~~~~L~~~~qEKqell 327 (903)
-+. .+|.....+++.|+.++.||.-++
T Consensus 145 l~e---Dq~~~i~klkE~L~rmE~ekE~~l 171 (280)
T PF14992_consen 145 LCE---DQANEIKKLKEKLRRMEEEKEMLL 171 (280)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 344455556777777766666654
No 140
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=63.54 E-value=2.2e+02 Score=30.70 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=45.2
Q ss_pred hhhHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q psy588 237 RDKSTYENQL---KEVMKKMLAEKVEVMQKCQ-DTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFE 310 (903)
Q Consensus 237 eEK~~YE~~A---KESLrKlLQEKlEA~qKLe-ElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kE 310 (903)
+=+..|+..+ +.-+...++.|++..+.-. .....+..+..|+..+|..+..++.++..+..+-..........+
T Consensus 173 eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 173 EIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 3345666554 3445556666665554433 345666677777878887777777777777776555555444443
No 141
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=63.37 E-value=1.8e+02 Score=32.73 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=28.1
Q ss_pred hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKE 248 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKE 248 (903)
..|..++..+|.+|..+...++++.= .+..+..+...++...+.
T Consensus 257 ~~l~~~l~~le~~l~~l~~~y~~~hP--~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 257 QNLKTDIARAESKLAELSQRLGPNHP--QYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHHHHHHHHH
Confidence 36888888999999888777776642 444455544444444333
No 142
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=63.29 E-value=2.1e+02 Score=34.85 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=10.0
Q ss_pred hhHhhHHHHHHHHHHHHhc
Q psy588 203 DRLLSRVEFLESQLAAYSK 221 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sK 221 (903)
+.|..+++..|.+|+.|.+
T Consensus 204 ~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 204 ADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555543
No 143
>KOG2072|consensus
Probab=63.02 E-value=4.3e+02 Score=33.97 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=14.0
Q ss_pred hHHHHHhhhHhHHHHHHHHHH
Q psy588 312 TIDQLLNSNQEKSNTLEKLQY 332 (903)
Q Consensus 312 ~~~~L~~~~qEKqell~~v~~ 332 (903)
+..+++.+..|++++..++++
T Consensus 668 ~~~q~eel~Ke~kElq~rL~~ 688 (988)
T KOG2072|consen 668 KARQIEELEKERKELQSRLQY 688 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777776664
No 144
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=62.48 E-value=27 Score=40.40 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=64.6
Q ss_pred EEecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCceeeCCE
Q psy588 7 LTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQ 86 (903)
Q Consensus 7 Lt~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGTFVNGq 86 (903)
+-.+-.++|..+|.+.++.| .+++|-. .||++++=+. ..-..+....+++++.- ++--+||||.
T Consensus 5 ~Klr~Lng~L~GrEl~Lp~G-----~~tlG~~-------gcDi~lpL~~--~~~~~L~i~e~gi~l~~--~~~~vwVnG~ 68 (395)
T PRK15367 5 WKIRFLGHVLQGREVWLNEG-----NLSLGEK-------GCDICIPLTI--NEKIILREQADSLFVDA--GKARVRVNGR 68 (395)
T ss_pred eeeeecCCcccCcEEecCCC-----ceeecCC-------CceEEEECCC--CCEEEEEEcCCcEEEec--CCceEEECCE
Confidence 34455789999999999997 8999986 5999875433 34445666888888853 2347899999
Q ss_pred ecCCCCCCCCCeecCCCCEEEEcCceeeec
Q psy588 87 RLSKTNEESAPHELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 87 RLs~g~~eSePveL~dGDIIrLG~tVLr~~ 116 (903)
|...+ .+|--|-+|.+.+-.+.+.
T Consensus 69 ~~~~~------~~LPl~q~Ie~aG~~~vlG 92 (395)
T PRK15367 69 RFNPN------KPLPSSGVLQVAGVAIAFG 92 (395)
T ss_pred EcCCC------CCCCCcchhhhcceEEEec
Confidence 98763 4577788888777666553
No 145
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=62.22 E-value=88 Score=37.62 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=15.2
Q ss_pred ccccccchhhhhhhhhhcccc
Q psy588 543 RKIDDINAEITKCTNELVDAK 563 (903)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~ 563 (903)
+++..+..++..|-+.|....
T Consensus 502 ~~~~~le~~~~~~f~~l~~k~ 522 (650)
T TIGR03185 502 RKLQQLEEEITKSFKKLMRKH 522 (650)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 345668888888888887643
No 146
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=62.12 E-value=1.8e+02 Score=29.20 Aligned_cols=71 Identities=23% Similarity=0.307 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy588 228 LRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKY 299 (903)
Q Consensus 228 lRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~ 299 (903)
+.+.+..++.+-..++...+++-.++ .+.-...+..+.+.|-...+|.|+......+..+...++++-.+.
T Consensus 40 L~~K~~~lE~eld~~~~~l~~~k~~l-ee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~a 110 (143)
T PF12718_consen 40 LQKKNQQLEEELDKLEEQLKEAKEKL-EESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKA 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555544433 233444444556666666666666555555555555555444443
No 147
>KOG0977|consensus
Probab=61.43 E-value=2.2e+02 Score=34.61 Aligned_cols=106 Identities=14% Similarity=0.263 Sum_probs=60.6
Q ss_pred cCChhHHHHHHHH-HhhhhHHHHHH---HHHHHHHHHHHHHHHHHH------------HH----------HHHHHHHhhH
Q psy588 222 SFTDDKLRDEIKL-LHRDKSTYENQ---LKEVMKKMLAEKVEVMQK------------CQ----------DTERKLVNIE 275 (903)
Q Consensus 222 N~tEDklRkeLlq-LqeEK~~YE~~---AKESLrKlLQEKlEA~qK------------Le----------ElERsL~~sE 275 (903)
+-..+.|+.+|.. |.+=+..|+.. .++-|+..++.|+...+. -+ .+...|+.+|
T Consensus 237 ~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE 316 (546)
T KOG0977|consen 237 ADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELE 316 (546)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhcccc
Confidence 3455667766654 44556777754 567788888888877773 12 2223333344
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-hhhhhchHHHHHhhhHhHHHHH
Q psy588 276 NECSNLQELLDRNRDELEEIIKKYQDQVTK-NKEFESTIDQLLNSNQEKSNTL 327 (903)
Q Consensus 276 ~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~-~~~kES~~~~L~~~~qEKqell 327 (903)
..-..|-++.++|+.++.+-...|...++. -.+...|+++...+..|.|+|+
T Consensus 317 ~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~Ll 369 (546)
T KOG0977|consen 317 SRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLL 369 (546)
T ss_pred ccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444455555555555555555553332 2222347777777777777665
No 148
>KOG0239|consensus
Probab=60.92 E-value=1.9e+02 Score=35.79 Aligned_cols=11 Identities=0% Similarity=0.244 Sum_probs=4.6
Q ss_pred HhhhhHHHHHH
Q psy588 235 LHRDKSTYENQ 245 (903)
Q Consensus 235 LqeEK~~YE~~ 245 (903)
++.++..|+..
T Consensus 208 ~~~~~~~l~~~ 218 (670)
T KOG0239|consen 208 AQEERRVLADS 218 (670)
T ss_pred hHHHHHHHHHH
Confidence 34444444443
No 149
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=60.51 E-value=1.9e+02 Score=35.01 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=42.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 231 EIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 231 eLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
.+.+|..+++.++.+|. ....|=-....||...|+.+...+.|....+.....++.||.-...-|.+|+..
T Consensus 421 RI~eLt~qlQ~adSKa~----~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~ 491 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAV----HFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSM 491 (518)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34445555555544432 112222223345566666777777777777777777777777777777777775
No 150
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=60.36 E-value=2.9 Score=50.34 Aligned_cols=88 Identities=25% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-hhHhh---HHHHHHHHHHHHhccCChh-HHHH
Q psy588 156 ELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQE-DRLLS---RVEFLESQLAAYSKSFTDD-KLRD 230 (903)
Q Consensus 156 ELyQLSqYLqEALqREqmLEqKLaiLQeIL~~Tk~AAE~sWqaLIdE-DrLLS---RIE~LEnQLq~~sKN~tED-klRk 230 (903)
+++++...+.+..++-..++..+..|+.=.......|. ...++.|| |.|.. |...||+.+..|.+++.+- .+|+
T Consensus 254 el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~-~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~ 332 (713)
T PF05622_consen 254 ELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAR-EARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKR 332 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555444444444434444444445433333333322 45677777 88855 6777999999998876654 5677
Q ss_pred HHHHHhhhhHHHHH
Q psy588 231 EIKLLHRDKSTYEN 244 (903)
Q Consensus 231 eLlqLqeEK~~YE~ 244 (903)
++..|+++-..|..
T Consensus 333 qvk~Lee~N~~l~e 346 (713)
T PF05622_consen 333 QVKELEEDNAVLLE 346 (713)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666543
No 151
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=59.76 E-value=2.1e+02 Score=29.22 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh---------hhchHHHHHhhhHhHHHHHHHHH
Q psy588 276 NECSNLQELLDRNRDELEEIIKKYQDQVTKNKE---------FESTIDQLLNSNQEKSNTLEKLQ 331 (903)
Q Consensus 276 ~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~---------kES~~~~L~~~~qEKqell~~v~ 331 (903)
.+.+.+|...+.++.+++.+..+..+...+.+. +...++....+++.-+++-.++.
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~ 137 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKID 137 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777776665554222 22344444455555454444443
No 152
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=59.35 E-value=3e+02 Score=30.98 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHhHHHHHHHHHHH
Q psy588 227 KLRDEIKLLHRDKST---YENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIE----NECSNLQELLDRNRDELEEIIKKY 299 (903)
Q Consensus 227 klRkeLlqLqeEK~~---YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE----~EC~~LKeq~E~Lq~EL~EL~~K~ 299 (903)
.+.+.+..|+.|+.. .+..+.+.+-.+.+.+.....++..+++.-...+ .|...+|+.+..+..++.....+.
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555543 4445555566666655566666665555554432 255555655555555555555554
Q ss_pred HHHHHhhhhhhchHHHHHhhhHhHHHHHHHHHHHHH
Q psy588 300 QDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETL 335 (903)
Q Consensus 300 sEqvt~~~~kES~~~~L~~~~qEKqell~~v~~~~~ 335 (903)
.+...+ +..+...+.....+|++++.+|.-.+-
T Consensus 228 ~e~~~~---l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 228 EELEEE---LQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 333555777888888888777665443
No 153
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=59.32 E-value=1e+02 Score=33.96 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q psy588 239 KSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFE 310 (903)
Q Consensus 239 K~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kE 310 (903)
|..|+. .|+-|+-...||.+...+++++|..+.....+...++-....|.+.+..+..++....+++.+++
T Consensus 134 ke~~ee-~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 134 KEDYEE-LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 444443 35556666677777777777777776666666666666666666666666666666666555554
No 154
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=58.77 E-value=11 Score=45.70 Aligned_cols=64 Identities=20% Similarity=0.061 Sum_probs=52.6
Q ss_pred CCccccccceEEEE--ECCEEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEEEcCceeeecc
Q psy588 52 DCKVLSRNHALIWY--YNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDVIETNR 117 (903)
Q Consensus 52 dDpvVSR~HAeI~~--edG~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrLG~tVLr~~~ 117 (903)
..+.++|.|+.|.+ ..+.|++.+.| +||..|+|.+..-+ ..+.+..|..|-+...|+....+..
T Consensus 123 ~~k~~~~~~~sIr~Nls~~~a~~~i~g-~~g~~~~g~~~~ig-P~~~~~~l~~g~~~~~~~~~~~~~~ 188 (610)
T COG5025 123 YAKVVSRWQNSIRHNLSLNDAFIKIEG-RNGAKVKGHFWSIG-PGHETQFLKSGLRLDGGGKQMMFTL 188 (610)
T ss_pred cccccchhhhhhhcccccCceEEEEec-cCCccccceeeccC-CCccceeeccccccccccccccccC
Confidence 55678999999999 57789999996 69999999987753 2366788999999999998777653
No 155
>KOG1962|consensus
Probab=58.53 E-value=1.3e+02 Score=32.64 Aligned_cols=53 Identities=15% Similarity=0.313 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy588 252 KMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVT 304 (903)
Q Consensus 252 KlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt 304 (903)
+.-++.--+..+++..+..|..++....+++.+.+.++.|...|.++|+..-+
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33444444556777788888888888999999999999998888888776433
No 156
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=58.37 E-value=4.8e+02 Score=32.95 Aligned_cols=57 Identities=33% Similarity=0.436 Sum_probs=31.1
Q ss_pred HHHHH-HHHHHHHHHHHHHHhHHHHHHhcChhhhHhhhhccccccccccchhhhhHHHHhh
Q psy588 422 IEKVT-KDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEKLKQT 481 (903)
Q Consensus 422 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (903)
+|.+. +-|-..+-.+|+++..++.=..+-|.+|.++-.. +|--.+ .|+.+..++.++
T Consensus 370 vERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~ea--v~S~q~-~L~s~ma~ve~a 427 (739)
T PF07111_consen 370 VERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEA--VSSSQQ-WLESQMAKVEQA 427 (739)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHH
Confidence 44444 2355556666666666666666666666665432 332222 355566666553
No 157
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=58.00 E-value=2.5e+02 Score=29.58 Aligned_cols=99 Identities=18% Similarity=0.251 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy588 208 RVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDR 287 (903)
Q Consensus 208 RIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~ 287 (903)
-|.+|..++..+.+ .+...++.+.++..+... ..+-|+++.+|.-+...++.+-++... -....|.++..
T Consensus 28 lIksLKeei~emkk--~e~~~~k~m~ei~~eN~~----L~epL~~a~~e~~eL~k~L~~y~kdK~----~L~~~k~rl~~ 97 (201)
T PF13851_consen 28 LIKSLKEEIAEMKK--KEERNEKLMAEISQENKR----LSEPLKKAEEEVEELRKQLKNYEKDKQ----SLQNLKARLKE 97 (201)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 34444444444433 333333444444444322 345566666665555555555444333 12223444444
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhchHHHH
Q psy588 288 NRDELEEIIKKYQDQVTKNKEFESTIDQL 316 (903)
Q Consensus 288 Lq~EL~EL~~K~sEqvt~~~~kES~~~~L 316 (903)
++.++..+.-.|.....++...+..++.|
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333333
No 158
>KOG4603|consensus
Probab=57.18 E-value=1.9e+02 Score=30.87 Aligned_cols=78 Identities=17% Similarity=0.397 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy588 210 EFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKE---VMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLD 286 (903)
Q Consensus 210 E~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKE---SLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E 286 (903)
..+|+.|..++++++-+.+.+++..|-.+-..|....+. +.+-+. -++.+.....-+.-|..||+.-.
T Consensus 103 s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vt---------pedk~~v~~~y~~~~~~wrk~kr 173 (201)
T KOG4603|consen 103 SYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVT---------PEDKEQVYREYQKYCKEWRKRKR 173 (201)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888888888888888777777654321 111111 12333333444455666666555
Q ss_pred HhHHHHHHHH
Q psy588 287 RNRDELEEII 296 (903)
Q Consensus 287 ~Lq~EL~EL~ 296 (903)
....=|..+.
T Consensus 174 mf~ei~d~~~ 183 (201)
T KOG4603|consen 174 MFREIIDKLL 183 (201)
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 159
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=56.44 E-value=2.6e+02 Score=29.33 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q psy588 259 EVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKK 298 (903)
Q Consensus 259 EA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K 298 (903)
....++..+.........+....|+..+.++..++.....
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455544444444444443
No 160
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.13 E-value=1.8e+02 Score=29.11 Aligned_cols=73 Identities=29% Similarity=0.361 Sum_probs=45.5
Q ss_pred HhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy588 205 LLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQEL 284 (903)
Q Consensus 205 LLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq 284 (903)
|...+..|+++|..+.+..+-+.++..+.++..+... +++|++..+. ..-..+..|...+...
T Consensus 91 l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~------------l~~kL~~l~~-----~~~~vs~ee~~~~~~~ 153 (169)
T PF07106_consen 91 LKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEE------------LEEKLEKLRS-----GSKPVSPEEKEKLEKE 153 (169)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH------------HHHHHHHHHh-----CCCCCCHHHHHHHHHH
Confidence 3344556888888888888888888888888877655 3333333322 1111456666666666
Q ss_pred HHHhHHHHHH
Q psy588 285 LDRNRDELEE 294 (903)
Q Consensus 285 ~E~Lq~EL~E 294 (903)
+.....+|..
T Consensus 154 ~~~~~k~w~k 163 (169)
T PF07106_consen 154 YKKWRKEWKK 163 (169)
T ss_pred HHHHHHHHHH
Confidence 6666666643
No 161
>KOG0971|consensus
Probab=56.06 E-value=5.9e+02 Score=33.30 Aligned_cols=101 Identities=16% Similarity=0.269 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHH
Q psy588 156 ELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLL 235 (903)
Q Consensus 156 ELyQLSqYLqEALqREqmLEqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqL 235 (903)
.+.+|.+-|.-+..|..--+.||-.|.+.-...++. .-|. -++..+...|+.+|..- |.+..++
T Consensus 232 QvrdLtEkLetlR~kR~EDk~Kl~Elekmkiqleql--qEfk-----Skim~qqa~Lqrel~ra---------R~e~kea 295 (1243)
T KOG0971|consen 232 QVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQL--QEFK-----SKIMEQQADLQRELKRA---------RKEAKEA 295 (1243)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--HHHH-----HHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 344555555555556666666676676655544433 2232 23455566667777664 3455555
Q ss_pred hhhhHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 236 HRDKSTYENQ-L--KEVMKKMLAEKVEVMQKCQDTERKLV 272 (903)
Q Consensus 236 qeEK~~YE~~-A--KESLrKlLQEKlEA~qKLeElERsL~ 272 (903)
++-|..|-.- | -+++.-+.=+|--|+.|...+|..+.
T Consensus 296 qe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve 335 (1243)
T KOG0971|consen 296 QEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVE 335 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5555555322 1 24555555566666666655544443
No 162
>KOG0964|consensus
Probab=55.98 E-value=5.7e+02 Score=33.57 Aligned_cols=154 Identities=17% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchh----hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHH------
Q psy588 176 NKLSKLQHIVIDLKKAADVSWKALIQE----DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQ------ 245 (903)
Q Consensus 176 qKLaiLQeIL~~Tk~AAE~sWqaLIdE----DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~------ 245 (903)
.+|..|...-..+-..++.-..++.+- +.|.+.+..||+.|..+-. -++.++.+=.++-..|.+.+..
T Consensus 237 ~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~--ekeq~~a~~t~~~k~kt~lel~~kdlq~ 314 (1200)
T KOG0964|consen 237 GELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLRE--EKEQLKARETKISKKKTKLELKIKDLQD 314 (1200)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHH----------------
Q psy588 246 -----------LKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKK---------------- 298 (903)
Q Consensus 246 -----------AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K---------------- 298 (903)
|-..|+++..+=-+-.+.|..++-.+...-.|-..++.++..+++..+.|.+|
T Consensus 315 ~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkw 394 (1200)
T KOG0964|consen 315 QITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKW 394 (1200)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHH
Q ss_pred -------HHHHHHhhhhhhc-hHHHHHhhhHhHHHHHHHHH
Q psy588 299 -------YQDQVTKNKEFES-TIDQLLNSNQEKSNTLEKLQ 331 (903)
Q Consensus 299 -------~sEqvt~~~~kES-~~~~L~~~~qEKqell~~v~ 331 (903)
+..-....++.++ +...++.++.+..+.+++++
T Consensus 395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~ 435 (1200)
T KOG0964|consen 395 IRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIK 435 (1200)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 163
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=55.60 E-value=2.7e+02 Score=29.34 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy588 227 KLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQEL 284 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq 284 (903)
.+-..|..+.+|-.. .++-|++.-..--++.+++.+.+..+..+.+++.+|+..
T Consensus 58 ~Lpqll~~h~eEvr~----Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L 111 (194)
T PF15619_consen 58 ELPQLLQRHNEEVRV----LRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKL 111 (194)
T ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444 344455554444555566666666666666666666654
No 164
>KOG0804|consensus
Probab=55.46 E-value=2e+02 Score=34.47 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q psy588 247 KEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEII 296 (903)
Q Consensus 247 KESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~ 296 (903)
|+-+...++|.-+..+...+++......|+.++.+.....+.+.++....
T Consensus 353 k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 353 KQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666667777777777777777777777777777766665
No 165
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=55.39 E-value=2.4e+02 Score=30.01 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 244 NQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 244 ~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
..+.+-..+.-+||-+..+++..+++.+..++....++.++.+..+.++.++..+..+
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666667777777777777777777777777777777777776665554
No 166
>KOG4403|consensus
Probab=54.85 E-value=2.9e+02 Score=33.14 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhHHHHHHHHHH
Q psy588 246 LKEVMKKMLAEKVEVMQKCQDTERKLVNI-ENECSNLQELLDRNRDELEEIIKK 298 (903)
Q Consensus 246 AKESLrKlLQEKlEA~qKLeElERsL~~s-E~EC~~LKeq~E~Lq~EL~EL~~K 298 (903)
|.+--|.+-.||+..++++-+..|.-+-. .-||...|+.+|++..+|+++-..
T Consensus 271 ar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEke 324 (575)
T KOG4403|consen 271 AREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKE 324 (575)
T ss_pred HHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556667777777776555544322 235666666666666666655443
No 167
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=54.32 E-value=1.5e+02 Score=35.74 Aligned_cols=126 Identities=20% Similarity=0.181 Sum_probs=67.3
Q ss_pred hhHhhHHHHHHHHHHHHhc-cCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSK-SFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNL 281 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sK-N~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~L 281 (903)
++|.+..+.|++|++-..| .-.-..+++.-..|..|-.+|+...+-+=+| .++..-++.||+ -.....|.|...|
T Consensus 274 ~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K-~~~~~g~l~kl~---~eie~kEeei~~L 349 (622)
T COG5185 274 ANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQK-SQEWPGKLEKLK---SEIELKEEEIKAL 349 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHhcchHHHHHH---HHHHHHHHHHHHH
Confidence 7788888888888876443 1223356666777888888888765544333 455555555544 3344455666666
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHHHHHHHH
Q psy588 282 QELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQY 332 (903)
Q Consensus 282 Keq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqell~~v~~ 332 (903)
|+.-+.|..++....=.-.+=....+++|.+.-.|...+.++.+|-+.|--
T Consensus 350 ~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~ 400 (622)
T COG5185 350 QSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKS 400 (622)
T ss_pred HhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 655555544443322111111111233344444445555555555554433
No 168
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=54.30 E-value=2.4e+02 Score=28.28 Aligned_cols=80 Identities=24% Similarity=0.290 Sum_probs=47.9
Q ss_pred hHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy588 204 RLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQE 283 (903)
Q Consensus 204 rLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKe 283 (903)
.+-++...||++++.+ .++++++.+=+..-++++++-+.+..+.-..+++....+... .+..-
T Consensus 24 ~v~~~l~~LEae~q~L-------------~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~-~~~r~--- 86 (126)
T PF09403_consen 24 SVESELNQLEAEYQQL-------------EQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQD-SKVRW--- 86 (126)
T ss_dssp HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGST---
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cchhH---
Confidence 4677788899998874 556666666666666777777776666665555444444322 12222
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q psy588 284 LLDRNRDELEEIIKKYQDQVT 304 (903)
Q Consensus 284 q~E~Lq~EL~EL~~K~sEqvt 304 (903)
.+.+..++..+|.+-.+
T Consensus 87 ----yk~eYk~llk~y~~~~~ 103 (126)
T PF09403_consen 87 ----YKDEYKELLKKYKDLLN 103 (126)
T ss_dssp ----THHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHH
Confidence 23555666666666444
No 169
>KOG0999|consensus
Probab=54.01 E-value=5.2e+02 Score=32.05 Aligned_cols=92 Identities=30% Similarity=0.494 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy588 178 LSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEK 257 (903)
Q Consensus 178 LaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEK 257 (903)
++.|..++.+.+++|+.... -|.+|. ||.=.+.+- +-+++|++|..|.+|-.+| -+||-|+.-+
T Consensus 621 i~tlrtvlkankqtaevalt------nlksKY---EnEK~mvte--tm~KlRnELk~Lkedaatf-----sslramf~~R 684 (772)
T KOG0999|consen 621 ITTLRTVLKANKQTAEVALT------NLKSKY---ENEKAMVTE--TMDKLRNELKALKEDAATF-----SSLRAMFAAR 684 (772)
T ss_pred HHHHHHHHHHhHHHHHHHHH------HhHhhh---hhHHHHHHH--HHHHHHHHHHHHHHHHHHH-----HHHHHHhcch
Confidence 55666667666666666553 344454 555555443 6789999999999999886 5799999988
Q ss_pred HH-HHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy588 258 VE-VMQKCQDTERKLVNIENECSNLQELL 285 (903)
Q Consensus 258 lE-A~qKLeElERsL~~sE~EC~~LKeq~ 285 (903)
|+ -..++.+++|.|+-+|+|-..|..++
T Consensus 685 ~ee~~tq~de~~~ql~aaedekKtln~ll 713 (772)
T KOG0999|consen 685 CEEYVTQLDELQRQLAAAEDEKKTLNQLL 713 (772)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 86 46899999999999999876665443
No 170
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=53.92 E-value=4.2e+02 Score=35.23 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=10.2
Q ss_pred CCcceEEEEcccCCCCCeEEEcCC
Q psy588 15 PFAERKLILENTANKNAAVKIGRC 38 (903)
Q Consensus 15 Pf~~RtL~L~sGp~~G~~VtIGRs 38 (903)
-|...++.+.. |..+.+|.+
T Consensus 14 ~~~~~~~~f~~----g~~~~~G~N 33 (1353)
T TIGR02680 14 YYDEQEFWFRD----GRLLLRGNN 33 (1353)
T ss_pred cccceEEecCC----CeEEEECCC
Confidence 34455555555 234444654
No 171
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=53.65 E-value=1.5e+02 Score=30.92 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q psy588 257 KVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIK 297 (903)
Q Consensus 257 KlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~ 297 (903)
+-+...++.+++..+...+.+...|+..++.++....+..+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777778888888888888888887777766655543
No 172
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=53.21 E-value=66 Score=32.74 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHH
Q psy588 259 EVMQKCQDTERKLVNIENECSNLQELLDRNRDEL 292 (903)
Q Consensus 259 EA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL 292 (903)
.....++++++.+...+.|...+|+|.+.++.|.
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3446667777777778888888888887776653
No 173
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=52.47 E-value=3.1e+02 Score=29.09 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy588 259 EVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQ 300 (903)
Q Consensus 259 EA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~s 300 (903)
++.+||.-++..|..++.-+...-.....++.++..+.+...
T Consensus 117 E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 117 EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 344455455555555555555555555555555555544443
No 174
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=52.26 E-value=3.4e+02 Score=29.41 Aligned_cols=101 Identities=17% Similarity=0.276 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy588 228 LRDEIKLLHRDKSTYENQLKEVMKKM--LAEKV-EVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVT 304 (903)
Q Consensus 228 lRkeLlqLqeEK~~YE~~AKESLrKl--LQEKl-EA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt 304 (903)
+.+.|.+++++-...+....++-+++ |+||+ .|......|++....++.+...|+....+...+-..|..+..+...
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455544444333333333222 22332 2333334566666777778888888777777777777776666443
Q ss_pred hhhhhhchHHHHHhhhHhHHHHHHHHH
Q psy588 305 KNKEFESTIDQLLNSNQEKSNTLEKLQ 331 (903)
Q Consensus 305 ~~~~kES~~~~L~~~~qEKqell~~v~ 331 (903)
.... +.+.......|...+.++++
T Consensus 90 ~i~~---l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 90 EIAR---LEEESERKEEEAEELQEELE 113 (246)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3222 22333344444444444433
No 175
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=51.89 E-value=3.2e+02 Score=32.73 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhcChhhhHhhhhcccc
Q psy588 422 IEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSKYL 463 (903)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (903)
.+++++++.+.+..+=++.-..-.|.+-|.+.+.+|-.-+|-
T Consensus 282 ~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~l~~l~~r 323 (514)
T TIGR03319 282 VEKATKEVDNAIREEGEQAAFDLGVHGLHPELIKLLGRLKFR 323 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhhcc
Confidence 345567777777777777777777777788877777765543
No 176
>KOG1853|consensus
Probab=51.76 E-value=2.6e+02 Score=31.42 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy588 227 KLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKN 306 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~ 306 (903)
+++...++|.++-.-||.-..|- .++| ..+|.++|-.+.-++.+.++++ .|..-..+|+..+..+.
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~-Eael------esqL~q~etrnrdl~t~nqrl~-------~E~e~~Kek~e~q~~q~ 89 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREI-EAEL------ESQLDQLETRNRDLETRNQRLT-------TEQERNKEKQEDQRVQF 89 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 45556667777777777666552 2222 2555666655555555555554 45555555666666666
Q ss_pred hhhhc-hHHHHHhhhHhHHHHHHHHHHHHH
Q psy588 307 KEFES-TIDQLLNSNQEKSNTLEKLQYETL 335 (903)
Q Consensus 307 ~~kES-~~~~L~~~~qEKqell~~v~~~~~ 335 (903)
...+| +.+.+--+..-|..+.|.|--+.+
T Consensus 90 y~q~s~Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 90 YQQESQLEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655 666666666666667666654443
No 177
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.70 E-value=2.5e+02 Score=29.89 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHh
Q psy588 247 KEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQE 322 (903)
Q Consensus 247 KESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qE 322 (903)
....++..+..-.+.++..+..........|...++++.+.++...+.+......+.+...+++.-.+.+...+++
T Consensus 27 ~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 27 QQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555555555555556666665555555555555555555444444333333333333
No 178
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=51.45 E-value=5.1e+02 Score=31.93 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=13.2
Q ss_pred hhHhhHHHHHHHHHHHHhc
Q psy588 203 DRLLSRVEFLESQLAAYSK 221 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sK 221 (903)
+.|..+++..|.+|+.|.+
T Consensus 277 ~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 277 PEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777755
No 179
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=51.28 E-value=1.7e+02 Score=25.74 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=52.7
Q ss_pred ccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy588 221 KSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDR 287 (903)
Q Consensus 221 KN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~ 287 (903)
++.+...+++...+|..++..++.-.|..+-.-+.+=+.|...+..++..+.........|+...+.
T Consensus 17 ~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~ 83 (87)
T PF08700_consen 17 KNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQS 83 (87)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999988888888888877776665555555544443
No 180
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=51.26 E-value=5.5e+02 Score=31.55 Aligned_cols=14 Identities=36% Similarity=0.442 Sum_probs=9.2
Q ss_pred hhcccccccccccc
Q psy588 337 AQKQLDAFTLKDNL 350 (903)
Q Consensus 337 ~~~~~~~~~~~~~~ 350 (903)
.|+-..+|++-|..
T Consensus 525 ~gkL~RtF~v~dEl 538 (594)
T PF05667_consen 525 TGKLDRTFTVTDEL 538 (594)
T ss_pred HHHHHhHHHHHHHH
Confidence 55666677776665
No 181
>KOG0240|consensus
Probab=50.90 E-value=4.8e+02 Score=32.24 Aligned_cols=248 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred cccceEEEE------------ECCEEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEE-----EEcCceeeeccCC
Q psy588 57 SRNHALIWY------------YNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVV-----QFGVDVIETNRNT 119 (903)
Q Consensus 57 SR~HAeI~~------------edG~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDII-----rLG~tVLr~~~~~ 119 (903)
||-|+.|.. ..|+.||+|| .|.-=-+.+-..| ..|..-+.| .+|..+-..+.++
T Consensus 207 SRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDL---aGSEkvsKtga~g------~vleEaK~INkSLsaLgnvI~aLa~g~ 277 (607)
T KOG0240|consen 207 SRSHSIFLIHVKQENVEDKRKLSGKLYLVDL---AGSEKVSKTGAEG------AVLEEAKNINKSLSALGNVINALAEGP 277 (607)
T ss_pred cccceEEEEEEEeccccchhhccccEEEEEc---ccccccCCCCccc------hhHHHHhhhhhhHHHHHHHHHHHhcCC
Q ss_pred -----------------cccccceEEEEEeecCCccccccCCCcc--cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 120 -----------------PVTHGCIIANLKLFLPDGKEAKASPTSM--LISSMPLEELYQLNTCIQEALQRENMLKNKLSK 180 (903)
Q Consensus 120 -----------------~VthgcIvA~VrL~lPdG~EAkaspSsg--v~nEVpLKELyQLSqYLqEALqREqmLEqKLai 180 (903)
.....|=+.-+-+-.|.+..+.--+++- ....-..+....++.-+..-.+..++-..|
T Consensus 278 ~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~k--- 354 (607)
T KOG0240|consen 278 KSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKK--- 354 (607)
T ss_pred CCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHHHHHHHHHHH---
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy588 181 LQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEV 260 (903)
Q Consensus 181 LQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA 260 (903)
|.+...++.++.-..-+......+.....=.-+..+..+.....++..--+-.++-.
T Consensus 355 ----------------------d~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~- 411 (607)
T KOG0240|consen 355 ----------------------DKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGS- 411 (607)
T ss_pred ----------------------hHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccc-
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHhhhhhhc-hHHHHHhhhHhHHHHHHHHHHHHHh
Q psy588 261 MQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD---QVTKNKEFES-TIDQLLNSNQEKSNTLEKLQYETLQ 336 (903)
Q Consensus 261 ~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE---qvt~~~~kES-~~~~L~~~~qEKqell~~v~~~~~~ 336 (903)
+++.-...+.+|.+|..++.....++.....-+.+ +..+..++.+ .+..+....+|..++++.+|.-...
T Consensus 412 ------~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e 485 (607)
T KOG0240|consen 412 ------LEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDE 485 (607)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccccccc
Q psy588 337 AQKQLDAFT 345 (903)
Q Consensus 337 ~~~~~~~~~ 345 (903)
.--.+++|.
T Consensus 486 ~~e~~~al~ 494 (607)
T KOG0240|consen 486 VKEVLTALE 494 (607)
T ss_pred HHHHHHHHH
No 182
>KOG4674|consensus
Probab=50.84 E-value=8.8e+02 Score=33.81 Aligned_cols=129 Identities=19% Similarity=0.277 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhh
Q psy588 160 LNTCIQEALQRENMLKNKLSKLQHIVIDLKKAAD-VSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRD 238 (903)
Q Consensus 160 LSqYLqEALqREqmLEqKLaiLQeIL~~Tk~AAE-~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeE 238 (903)
+..|..|+..++..+..-+..|+.=+.+.+..-. ..-.. +-=.-|+++|++-+.. +|+++-.|.+.
T Consensus 645 le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~----~fA~ekle~L~~~ie~---------~K~e~~tL~er 711 (1822)
T KOG4674|consen 645 LESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNEL----NLAKEKLENLEKNLEL---------TKEEVETLEER 711 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 3566778777778887777777766655444311 10011 1112344555555444 45566666655
Q ss_pred hHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 239 KSTYE---NQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 239 K~~YE---~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
...|+ ...+..++.+-+|-..|-.+++.++.-+.++.+|-..++..-..|..+++.+.+.+.+
T Consensus 712 ~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~ 777 (1822)
T KOG4674|consen 712 NKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQES 777 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544 5677788899999999999999999999999999999999888888888888887766
No 183
>KOG4196|consensus
Probab=50.65 E-value=2.5e+02 Score=28.63 Aligned_cols=89 Identities=21% Similarity=0.329 Sum_probs=59.7
Q ss_pred hhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy588 202 EDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQ--LKEVMKKMLAEKVEVMQKCQDTERKLVNIENECS 279 (903)
Q Consensus 202 EDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~--AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~ 279 (903)
|+..-.-+.-|..+|..|++ ++++.|..-+.+.-+- |.-+= ..-.++-.+||.....+.+++.
T Consensus 27 d~LvsmSVReLNr~LrG~~r--------eEVvrlKQrRRTLKNRGYA~sCR-------~KRv~Qk~eLE~~k~~L~qqv~ 91 (135)
T KOG4196|consen 27 DELVSMSVRELNRHLRGLSR--------EEVVRLKQRRRTLKNRGYAQSCR-------VKRVQQKHELEKEKAELQQQVE 91 (135)
T ss_pred HHHHHhhHHHHHHHhcCCCH--------HHHHHHHHHHHHHhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33334467778888888864 6777776655553332 22121 1122344568888888888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 280 NLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 280 ~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
+|++.++.+..|++-+..||....+.
T Consensus 92 ~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 92 KLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999888888876553
No 184
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=50.33 E-value=5.3e+02 Score=31.04 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=56.9
Q ss_pred hhHhhHHHHHHHHHHHHhc--cCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSK--SFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSN 280 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sK--N~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~ 280 (903)
+.|..+.+.+-..|-..+- +..-+.+.+.|..++.+-..|+.....+ .=++|..-+..++..+...+.....
T Consensus 139 ~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~G------D~~~A~eil~~l~~~~~~l~~~~e~ 212 (560)
T PF06160_consen 139 EELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENG------DYLEAREILEKLKEETDELEEIMED 212 (560)
T ss_pred HHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666555333 3456788888888888888887654332 1123334444444444444444443
Q ss_pred H----HHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q psy588 281 L----QELLDRNRDELEEIIKKYQDQVTKNKEF 309 (903)
Q Consensus 281 L----Keq~E~Lq~EL~EL~~K~sEqvt~~~~k 309 (903)
+ ++....++.++.++..-|.+...+-..+
T Consensus 213 IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l 245 (560)
T PF06160_consen 213 IPKLYKELQKEFPDQLEELKEGYREMEEEGYYL 245 (560)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCC
Confidence 3 3334445566777777777655553333
No 185
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=49.75 E-value=2.7e+02 Score=30.37 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=14.4
Q ss_pred eecCCCCEEEEcCceeeec
Q psy588 98 HELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 98 veL~dGDIIrLG~tVLr~~ 116 (903)
..+..||.|.=|..+++++
T Consensus 57 i~v~~Gd~V~kG~~L~~ld 75 (331)
T PRK03598 57 LAVDEGDAVKAGQVLGELD 75 (331)
T ss_pred EEcCCCCEEcCCCEEEEEC
Confidence 4577888888888877765
No 186
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=49.52 E-value=4e+02 Score=29.38 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q psy588 261 MQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEF 309 (903)
Q Consensus 261 ~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~k 309 (903)
.+.++.+++....++.|...+....+.++.+...+..++..+...+.+.
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555543333
No 187
>PF15294 Leu_zip: Leucine zipper
Probab=49.44 E-value=3.2e+02 Score=30.71 Aligned_cols=125 Identities=19% Similarity=0.298 Sum_probs=55.8
Q ss_pred hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQ----LKEVMKKMLAEKVEVMQKCQDTERKLVNIENEC 278 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~----AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC 278 (903)
+.|..|+..+|.+--.+-+ -..++..+|..|+....++... .+..==.-|+.|+.++. .++++++...+...
T Consensus 142 ~kLk~rl~~le~~at~~l~--Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK--~e~ek~~~d~~~~~ 217 (278)
T PF15294_consen 142 EKLKERLKSLEKQATSALD--EKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALK--SELEKALQDKESQQ 217 (278)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 6666666666666555433 3445666666666644443331 11111111333433332 22333333333323
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH----HHHHhhhh---hhchHHHHHhhhHhHHHHHHHHH
Q psy588 279 SNLQELLDRNRDELEEIIKKYQ----DQVTKNKE---FESTIDQLLNSNQEKSNTLEKLQ 331 (903)
Q Consensus 279 ~~LKeq~E~Lq~EL~EL~~K~s----Eqvt~~~~---kES~~~~L~~~~qEKqell~~v~ 331 (903)
..+++-+...+.++-.+.+... +..++++. .-.|+++|...|.+--+|.++++
T Consensus 218 k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 218 KALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred HHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHhc
Confidence 3332222222222222222211 11222221 11389999988888888876653
No 188
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=49.40 E-value=28 Score=36.22 Aligned_cols=69 Identities=25% Similarity=0.314 Sum_probs=38.2
Q ss_pred chhhhhhhhccchhhhhccc------cccCCCchhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhcChhhhHhhhh
Q psy588 391 FDDVHQILTQFDEYFLRFNE------SESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQ 459 (903)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (903)
.++|...+.+|.+||.+.-+ -.|..-+.|.-+|.--..+|+.++.+++++..|-.+.++||....-+.+
T Consensus 8 ~~~V~~yL~~~PdFf~~~~~ll~~l~~ph~~~~avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~ 82 (225)
T PF04340_consen 8 AEDVAAYLRQHPDFFERHPELLAELRLPHPSGGAVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRLHR 82 (225)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHhCHHHHHHcCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777766542 2233335888899999999999999999999999999999998766544
No 189
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=49.16 E-value=47 Score=35.34 Aligned_cols=98 Identities=17% Similarity=0.264 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHH
Q psy588 169 QRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKE 248 (903)
Q Consensus 169 qREqmLEqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKE 248 (903)
+-|-.|+..|+.|...+.....++... .. ...-...=+|+++.+|++.|..
T Consensus 96 wEevrLkrELa~Le~~l~~~~~~~~~~--~~--------------------~~~~~~~lvk~e~EqLL~YK~~------- 146 (195)
T PF12761_consen 96 WEEVRLKRELAELEEKLSKVEQAAESR--RS--------------------DTDSKPALVKREFEQLLDYKER------- 146 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc--cc--------------------CCcchHHHHHHHHHHHHHHHHH-------
Confidence 345667777777777777655554432 00 0001112346677777766654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHH
Q psy588 249 VMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEI 295 (903)
Q Consensus 249 SLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL 295 (903)
-|+.+-+-+-..-.-+..+...+.+.++.+..|.+.+..=+.+|++|
T Consensus 147 ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 147 QLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111101112223345566666777777777776666666666655
No 190
>KOG0243|consensus
Probab=48.80 E-value=1.8e+02 Score=37.81 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=12.9
Q ss_pred ccccchhhhhhhhhhcccc
Q psy588 545 IDDINAEITKCTNELVDAK 563 (903)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~ 563 (903)
.+.+...+.+|||..-+|-
T Consensus 724 ~~~~~~~~~~~~~~~~~~~ 742 (1041)
T KOG0243|consen 724 FQTLDNQAEKLTNLFSEAN 742 (1041)
T ss_pred HHHHHHHHHHHhhhHHHhh
Confidence 3566777778887766654
No 191
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=48.40 E-value=2.6e+02 Score=27.61 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhc-hHHHHHhhhHhHH
Q psy588 258 VEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFES-TIDQLLNSNQEKS 324 (903)
Q Consensus 258 lEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES-~~~~L~~~~qEKq 324 (903)
.+...+|..++++++...-.-..|..+-+.|...+..|.+.-.+....+.++++ +.+.+.+++-||+
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ 79 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQ 79 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666555555555555555666666666666666666666665 5555555555443
No 192
>KOG1899|consensus
Probab=48.28 E-value=4.9e+02 Score=32.64 Aligned_cols=119 Identities=24% Similarity=0.342 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHH---HH
Q psy588 175 KNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEV---MK 251 (903)
Q Consensus 175 EqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKES---Lr 251 (903)
..|+.-|+.++...+..-...-.++ .++|+++ ..||.|---+-..+++-++ .+..|+.++..||.+-..+ ++
T Consensus 138 gEKIrDLE~cie~kr~kLnatEEmL--Qqellsr-tsLETqKlDLmaevSeLKL--kltalEkeq~e~E~K~R~se~l~q 212 (861)
T KOG1899|consen 138 GEKIRDLETCIEEKRNKLNATEEML--QQELLSR-TSLETQKLDLMAEVSELKL--KLTALEKEQNETEKKLRLSENLMQ 212 (861)
T ss_pred hhhHHHHHHHHHHHHhhhchHHHHH--HHHHHhh-hhHHHHHhHHHHHHHHhHH--HHHHHHHHhhhHHHHHHhHHHHHH
Confidence 3466677777776554422222222 4677777 5677764333333444444 6777777777777765443 22
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q psy588 252 KMLAEKV-EVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKK 298 (903)
Q Consensus 252 KlLQEKl-EA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K 298 (903)
-+-+-|. +..+.--+-|..+..+..|.+.||++.+.-..|..-+..+
T Consensus 213 evn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~ 260 (861)
T KOG1899|consen 213 EVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRT 260 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHH
Confidence 2222111 1122222366777788888888888766555554444443
No 193
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=48.21 E-value=3.2e+02 Score=27.94 Aligned_cols=111 Identities=19% Similarity=0.271 Sum_probs=0.0
Q ss_pred hhHhhHHHHHHHHHHHHhccCChh---------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy588 203 DRLLSRVEFLESQLAAYSKSFTDD---------KLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVN 273 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~tED---------klRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~ 273 (903)
+-|+.|| |+||...|+.+++ .++++|-.|..+|.. |..++..|-++.+ -++--+..
T Consensus 9 E~LInrI----nelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~Ekvh--------LeeilnkKqe~l~---iLqlhcqe 73 (134)
T PF15233_consen 9 EDLINRI----NELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVH--------LEEILNKKQETLR---ILQLHCQE 73 (134)
T ss_pred HHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHHHH---HHHHHHHH
Q ss_pred hHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHHHHH
Q psy588 274 IENECSNLQEL------LDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEK 329 (903)
Q Consensus 274 sE~EC~~LKeq------~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqell~~ 329 (903)
.+.|..+-... --....+|+++..+|-+.-. ++.-+++-.++.++.--|+.|+++
T Consensus 74 ke~eaqrq~~~~~eck~R~~fe~qLE~lm~qHKdLwe-fh~~erLa~EI~~l~~sKEQLL~E 134 (134)
T PF15233_consen 74 KESEAQRQQTLLQECKLRLDFEEQLEDLMGQHKDLWE-FHMPERLAREICALESSKEQLLKE 134 (134)
T ss_pred HHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhHHHHhcC
No 194
>KOG0992|consensus
Probab=48.16 E-value=6.1e+02 Score=31.13 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 245 QLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 245 ~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
.-+|.|+-+..+++++..++..-+ -|+-...|-..+-++|+.+...+.-+-..|+.
T Consensus 208 h~~erlk~~~~s~~e~l~kl~~Eq-Qlq~~~~ehkllee~~~rl~~~~s~VegS~S~ 263 (613)
T KOG0992|consen 208 HLKERLKIVEESRLESLGKLNSEQ-QLQALIREHKLLEEHLERLHLQLSDVEGSWSG 263 (613)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence 557778888888888888776443 26666666666666666666666666655555
No 195
>PRK12704 phosphodiesterase; Provisional
Probab=47.94 E-value=3.7e+02 Score=32.26 Aligned_cols=95 Identities=23% Similarity=0.263 Sum_probs=40.4
Q ss_pred eeeccccchhhhhcccccccccccccc-------ccccccchhhh-hhhhccchhhhhccccccCCCchhHhHHHH----
Q psy588 358 YYMNFHIIKEKMTNIKNELGLETKVDQ-------NILVKYFDDVH-QILTQFDEYFLRFNESESSGLNSIEDIEKV---- 425 (903)
Q Consensus 358 ~~~~~~~~~~k~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 425 (903)
==|-|.+|-.-=.||+- |-.-|.||- .+++-.||++. .+-. .+.+.--..|...+-.||.+
T Consensus 219 d~mkgriigreGrnir~-~e~~tgvd~iiddtp~~v~ls~~~~~rre~a~------~~l~~l~~dg~i~P~~iee~~~~~ 291 (520)
T PRK12704 219 DEMKGRIIGREGRNIRA-LETLTGVDLIIDDTPEAVILSGFDPIRREIAR------LALEKLVQDGRIHPARIEEMVEKA 291 (520)
T ss_pred chhhcceeCCCcchHHH-HHHHhCCeEEEcCCCCeEEEecCChhhHHHHH------HHHHHHHhcCCcCCCCHHHHHHHH
Confidence 34556555443445542 344455551 23444455554 1111 11222222344444445444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhcChhhhHhhhh
Q psy588 426 TKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQ 459 (903)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (903)
++.+.+.+...-++....-.|..-|.+-+.+|-.
T Consensus 292 ~~~~~~~~~~~ge~~~~~lgi~~~~~~i~~ll~~ 325 (520)
T PRK12704 292 RKEVDEEIREEGEQAVFELGIHGLHPELIKLLGR 325 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHH
Confidence 4555555555554443333333444444444443
No 196
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=46.67 E-value=8.4e+02 Score=32.33 Aligned_cols=126 Identities=14% Similarity=0.131 Sum_probs=68.4
Q ss_pred HhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----
Q psy588 205 LLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSN---- 280 (903)
Q Consensus 205 LLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~---- 280 (903)
|-.+...++.|+....+......-+.++.+++.|-.+.+....+..-..+|+.+.. +|+++.|...+.++.....
T Consensus 178 lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~-kR~~~se~~~~~~~~~~~~~~~~ 256 (1109)
T PRK10929 178 LQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS-QRQREAERALESTELLAEQSGDL 256 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHhhccC
Confidence 34444445555555554445556677888888888888888777777777776654 4555566666655542111
Q ss_pred ---HHHH---HHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHHHHHHHHHH
Q psy588 281 ---LQEL---LDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYET 334 (903)
Q Consensus 281 ---LKeq---~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqell~~v~~~~ 334 (903)
++++ +..+-++|.+++.+-+.... .....+.++.+..|-.+.+.++++..+
T Consensus 257 ~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~---~~~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 257 PKSIVAQFKINRELSQALNQQAQRMDLIAS---QQRQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 12222222222222222111 122355566777777777777776654
No 197
>PRK12704 phosphodiesterase; Provisional
Probab=46.17 E-value=4.4e+02 Score=31.61 Aligned_cols=40 Identities=25% Similarity=0.450 Sum_probs=21.8
Q ss_pred ccCCCchhH-hHHHHH------------HHHHHHHHHHHHHHhHHHHHHhcChhh
Q psy588 412 ESSGLNSIE-DIEKVT------------KDLREQLHTAQEEYTSLQEIVNRNEEQ 453 (903)
Q Consensus 412 ~~~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (903)
--||++.++ .|...+ ....+....++.++. +.|....|+.
T Consensus 254 ~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~--~~~~~~ge~~ 306 (520)
T PRK12704 254 ILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD--EEIREEGEQA 306 (520)
T ss_pred EEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 357888887 222222 134556666666666 3355555544
No 198
>KOG0288|consensus
Probab=46.10 E-value=1.2e+02 Score=35.72 Aligned_cols=57 Identities=25% Similarity=0.213 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q psy588 253 MLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEF 309 (903)
Q Consensus 253 lLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~k 309 (903)
++--|.+-.||+.++++.++-.+.....|.++...+..+.+-+.+++.+.+..+.++
T Consensus 4 ~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~L 60 (459)
T KOG0288|consen 4 LYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRL 60 (459)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466667788888888888888888888888888777777777777766554444
No 199
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=46.00 E-value=5.9e+02 Score=30.38 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 160 LNTCIQEALQRENMLKNKLSKLQHIVIDLKKA 191 (903)
Q Consensus 160 LSqYLqEALqREqmLEqKLaiLQeIL~~Tk~A 191 (903)
+.+-+.+...++..+.+.+..|+.-+.....+
T Consensus 173 ~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~ 204 (563)
T TIGR00634 173 ARQQLKDRQQKEQELAQRLDFLQFQLEELEEA 204 (563)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC
Confidence 33334444444455555555555555544443
No 200
>PRK09039 hypothetical protein; Validated
Probab=45.92 E-value=5e+02 Score=29.48 Aligned_cols=43 Identities=2% Similarity=0.071 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 259 EVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 259 EA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
+++.++..+++.|.....+...-+.+...|+.++..|.+....
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~ 155 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAA 155 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777666666665555555555555555555443
No 201
>PF13514 AAA_27: AAA domain
Probab=45.38 E-value=8.1e+02 Score=31.78 Aligned_cols=161 Identities=20% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-hhHhhHHHHHHHHHHHHhccCChhHHHHHH-
Q psy588 155 EELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQE-DRLLSRVEFLESQLAAYSKSFTDDKLRDEI- 232 (903)
Q Consensus 155 KELyQLSqYLqEALqREqmLEqKLaiLQeIL~~Tk~AAE~sWqaLIdE-DrLLSRIE~LEnQLq~~sKN~tEDklRkeL- 232 (903)
.++-.+.+-+..+...-..+...+..|...........-........+ ..|..++..++.+|.......+...+.+++
T Consensus 808 ~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~ 887 (1111)
T PF13514_consen 808 EQLEELEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELE 887 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhh
Q ss_pred --------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy588 233 --------KLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVT 304 (903)
Q Consensus 233 --------lqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt 304 (903)
..+..-+...+. ...-+..+.++...+..+++.++.. .....+....+.+..++.++..+|.....
T Consensus 888 ~~d~~~l~~~l~~l~~~l~~-l~~~~~~l~~~~~~~~~~l~~l~~~-----~~~a~l~~e~e~~~a~l~~~~~~~~~~~l 961 (1111)
T PF13514_consen 888 ELDPDELEAELEELEEELEE-LEEELEELQEERAELEQELEALEGD-----DDAAELEQEREEAEAELEELAEEWAALRL 961 (1111)
T ss_pred ccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhchHHHHHhhhH
Q psy588 305 KNKEFESTIDQLLNSNQ 321 (903)
Q Consensus 305 ~~~~kES~~~~L~~~~q 321 (903)
-...++...+......+
T Consensus 962 a~~lL~~a~~~~r~~~~ 978 (1111)
T PF13514_consen 962 AAELLEEAIERYREERQ 978 (1111)
T ss_pred HHHHHHHHHHHHHHHhh
No 202
>KOG0742|consensus
Probab=45.08 E-value=6.5e+02 Score=30.59 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=70.4
Q ss_pred chhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy588 200 IQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECS 279 (903)
Q Consensus 200 IdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~ 279 (903)
.=+|.|.++.-.-|+.-|. -+.++++.||++-.. -+|.+|++.+|.+.|+++.-++||+ .+|.|..
T Consensus 154 rYqD~larkr~~~e~e~qr--------~~n~ElvrmQEeS~i----rqE~aRraTeE~iqaqrr~tE~era--e~Ereti 219 (630)
T KOG0742|consen 154 RYQDKLARKRYEDELEAQR--------RLNEELVRMQEESVI----RQEQARRATEEQIQAQRRKTEMERA--EAERETI 219 (630)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHhHHHHHHhHHHHH----HHHHHHHhHHHHHHHHHHHhHHHHH--HHHHHHH
Confidence 3457777766433333333 234688888887654 4677889999999999987766664 5677888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHHHHHHHHHHHhhhcccccc
Q psy588 280 NLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAF 344 (903)
Q Consensus 280 ~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqell~~v~~~~~~~~~~~~~~ 344 (903)
+.|...+.-- .---+|.++.++. +..++..+-|.++.++.|-+-----|.-+.+|
T Consensus 220 RvkA~Aeaeg---raheakl~edvnr-------r~l~~~~n~eRekwl~aInTtf~higgG~r~~ 274 (630)
T KOG0742|consen 220 RVKAKAEAEG---RAHEAKLNEDVNR-------RQLRLKANEEREKWLEAINTTFTHIGGGLRAF 274 (630)
T ss_pred HHHHHHhhhc---chhhhhhhHHHHH-------HHHHHHhhhHHHHHHHHHhhhHHHhhhHHHHH
Confidence 8876554321 1111233333332 23344556677777766654333333334443
No 203
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=44.95 E-value=5.4e+02 Score=29.66 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=19.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 280 NLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 280 ~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
.++.++..++.++.++..+|.+.+-+
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~ 276 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPD 276 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChH
Confidence 56677788888888888888776554
No 204
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=44.82 E-value=2.1e+02 Score=35.83 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=8.4
Q ss_pred HHHHHHHHHhhhhHHHH
Q psy588 227 KLRDEIKLLHRDKSTYE 243 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE 243 (903)
.+.+-|.+|+.++..|+
T Consensus 517 ~~~~li~~l~~~~~~~e 533 (782)
T PRK00409 517 KLNELIASLEELERELE 533 (782)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555555544
No 205
>KOG0018|consensus
Probab=44.73 E-value=8.9e+02 Score=32.10 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=34.0
Q ss_pred hchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHh-----------hhhHHHHHHHHHHHHHH
Q psy588 199 LIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLH-----------RDKSTYENQLKEVMKKM 253 (903)
Q Consensus 199 LIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLq-----------eEK~~YE~~AKESLrKl 253 (903)
..+-+.+..-++.+|+|+.+.++ ....+.+++.+.- ++...|+..-.++....
T Consensus 316 kk~~~~~~~~ie~~ek~l~av~~--~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~ 379 (1141)
T KOG0018|consen 316 KKDYRALKETIERLEKELKAVEG--AKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA 379 (1141)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh
Confidence 33457788888889999888765 4444445544432 45666766666666555
No 206
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=44.39 E-value=30 Score=32.27 Aligned_cols=63 Identities=30% Similarity=0.438 Sum_probs=47.4
Q ss_pred HHHHHhHHHHhHHHhHhhhcccchhHHhHHHhhcccc-------ccchhhHHHhhhhhHhhhhccchhhHHHhhhcC
Q psy588 606 LQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQ-------SKENDLLEEYEKLKLVIKDYQNVLPSIVESMNN 675 (903)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (903)
|.+.++.|+|.|. -+.|||+.||+|-.--. +....|-.+.++||---..||.-|-+++--|++
T Consensus 9 LE~KIqqAvdtI~-------LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~~ 78 (79)
T PRK15422 9 LEAKVQQAIDTIT-------LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 78 (79)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5667788888885 46799999999732211 122347789999999999999999998888764
No 207
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=44.10 E-value=7.7e+02 Score=31.18 Aligned_cols=46 Identities=33% Similarity=0.393 Sum_probs=19.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHH
Q psy588 281 LQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNT 326 (903)
Q Consensus 281 LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqel 326 (903)
+...++.++.++..+..+..+..+.....++....+.+..++.+++
T Consensus 693 ~~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 738 (908)
T COG0419 693 LEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKL 738 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445554444444442222222333333444444444444
No 208
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=43.95 E-value=3.6e+02 Score=30.31 Aligned_cols=74 Identities=26% Similarity=0.364 Sum_probs=42.3
Q ss_pred hHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy588 204 RLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQE 283 (903)
Q Consensus 204 rLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKe 283 (903)
.|..|...|.+.+..-.+..++ |+-+. +.-....+|+-|+|+.. ++|..|...+..+..+|+
T Consensus 56 ll~~~~k~L~aE~~qwqk~~pe------ii~~n--~~VL~~lgkeelqkl~~----------eLe~vLs~~q~KnekLke 117 (268)
T PF11802_consen 56 LLMMRVKCLTAELEQWQKRTPE------IIPLN--PEVLLTLGKEELQKLIS----------ELEMVLSTVQSKNEKLKE 117 (268)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC------cCCCC--HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 5677778888888777664442 11111 22333556666666554 566666666666666666
Q ss_pred HHHHhHHHHHHH
Q psy588 284 LLDRNRDELEEI 295 (903)
Q Consensus 284 q~E~Lq~EL~EL 295 (903)
.++.-++=+.+.
T Consensus 118 ~LerEq~wL~Eq 129 (268)
T PF11802_consen 118 DLEREQQWLDEQ 129 (268)
T ss_pred HHHHHHHHHHHH
Confidence 655555444433
No 209
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=43.91 E-value=5.1e+02 Score=29.01 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy588 237 RDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLD 286 (903)
Q Consensus 237 eEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E 286 (903)
-+-...|...|++++.+.++--...+.+.+++..-.+++.....-|..++
T Consensus 158 ~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELE 207 (267)
T PF10234_consen 158 LELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELE 207 (267)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544444444444444444443333333333333
No 210
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=43.86 E-value=3.2e+02 Score=26.68 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=18.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q psy588 280 NLQELLDRNRDELEEIIKKYQDQVTKNKEF 309 (903)
Q Consensus 280 ~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~k 309 (903)
.|.++-..++.++.++..++.+...+++.+
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666655554443
No 211
>PF15456 Uds1: Up-regulated During Septation
Probab=43.51 E-value=1.6e+02 Score=29.12 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhh-chh-hhHhhHHHHHHHHHHHHhccC
Q psy588 185 VIDLKKAADVSWKAL-IQE-DRLLSRVEFLESQLAAYSKSF 223 (903)
Q Consensus 185 L~~Tk~AAE~sWqaL-IdE-DrLLSRIE~LEnQLq~~sKN~ 223 (903)
+..+...-...|..+ .+| |.|...+..|.+.+....+++
T Consensus 5 L~~tAl~ds~~feiLs~eEVe~LKkEl~~L~~R~~~lr~kl 45 (124)
T PF15456_consen 5 LTETALGDSKEFEILSFEEVEELKKELRSLDSRLEYLRRKL 45 (124)
T ss_pred HHHHHHHHHHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334556533 233 778888888888887765533
No 212
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.05 E-value=2.4e+02 Score=35.24 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhhhHHHHH
Q psy588 227 KLRDEIKLLHRDKSTYEN 244 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE~ 244 (903)
.+.+-|.+|++++..|+.
T Consensus 512 ~~~~li~~L~~~~~~~e~ 529 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQ 529 (771)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555566666555544
No 213
>PRK11519 tyrosine kinase; Provisional
Probab=42.54 E-value=7.4e+02 Score=30.56 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=12.8
Q ss_pred hhHhhHHHHHHHHHHHHhc
Q psy588 203 DRLLSRVEFLESQLAAYSK 221 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sK 221 (903)
+.|..+++..|..|+.|.+
T Consensus 277 ~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 277 PEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777655
No 214
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=42.31 E-value=2.6e+02 Score=25.24 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q psy588 262 QKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKK 298 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K 298 (903)
.+....++.+...+.-+..|+...+..+.++...-..
T Consensus 14 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~ 50 (127)
T smart00502 14 KKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDE 50 (127)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555544444444443333
No 215
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.31 E-value=79 Score=26.41 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=12.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q psy588 267 TERKLVNIENECSNLQELLDRNRDELEEIIK 297 (903)
Q Consensus 267 lERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~ 297 (903)
+|+.+..+...+..|++.++.|+.|.+.|.+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~a 33 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRA 33 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333
No 216
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=41.95 E-value=8 Score=46.92 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=0.0
Q ss_pred hhHhhHHHHHHHHHHHHhccCC
Q psy588 203 DRLLSRVEFLESQLAAYSKSFT 224 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~t 224 (903)
|.+.++++.++.++.......+
T Consensus 34 de~erkL~~le~~I~k~~~~~~ 55 (759)
T PF01496_consen 34 DEMERKLRFLEEEIKKLKIPLP 55 (759)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHhcCccc
Confidence 5666777777777776654333
No 217
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=41.95 E-value=4.6e+02 Score=27.93 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=16.2
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 271 LVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 271 L~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
|..+|.||..|.........-+.+|-.|..+
T Consensus 122 Le~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~e 152 (178)
T PF14073_consen 122 LEKLEKEYLRLTATQSLAETKIKELEEKLQE 152 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666655555554445555444443
No 218
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=41.83 E-value=1.5e+02 Score=32.85 Aligned_cols=63 Identities=11% Similarity=0.181 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 243 ENQLKEVMKKMLAEKV---EVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 243 E~~AKESLrKlLQEKl---EA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
-.+|++.++|+-++.+ |-+++|++.|....-.+.|....++..+..|+.++-.-.-|.-+++.
T Consensus 119 rKtA~~~~rKl~~ke~E~~EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel~~RaEdy~kckI~~ 184 (265)
T PF06409_consen 119 RKTAKKHLRKLSMKECEHAEKERQLSEAEENGKLAMKEIHTYKQMFQRMQELQQRAEDYYKCKIAP 184 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 5678888888877554 55677888888888899999999999999988777776666555554
No 219
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=41.78 E-value=4.8e+02 Score=28.14 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-hhhhhchHHHHHhhhHhHHHHH
Q psy588 249 VMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK-NKEFESTIDQLLNSNQEKSNTL 327 (903)
Q Consensus 249 SLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~-~~~kES~~~~L~~~~qEKqell 327 (903)
++..+-+|-.+...+++.++..+.........|..++..++..+..-...|...++. ..+...++..+..+..|-++|+
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555554544444444444443 1122235555556666656554
No 220
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=41.48 E-value=3.5e+02 Score=26.45 Aligned_cols=40 Identities=13% Similarity=0.284 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 262 QKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
.++.++-..+...-.++..++..|.....++..+..+|+-
T Consensus 55 ~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~ 94 (150)
T PF07200_consen 55 PELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSP 94 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 4444444444445555555555555555555555555544
No 221
>KOG0963|consensus
Probab=41.38 E-value=8e+02 Score=30.61 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHH
Q psy588 258 VEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEE 294 (903)
Q Consensus 258 lEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~E 294 (903)
.-+|..|+..+.....+|.||.+|++++...+...+.
T Consensus 238 ~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~ 274 (629)
T KOG0963|consen 238 SLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKL 274 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3345666777777777777888888877666554443
No 222
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=40.96 E-value=4.5e+02 Score=28.59 Aligned_cols=73 Identities=12% Similarity=0.320 Sum_probs=40.1
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q psy588 224 TDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIK 297 (903)
Q Consensus 224 tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~ 297 (903)
....+.+++..+.++-.-.+...+ -...+++||..-+..|.++.....+.|......++..+..+.....+-+
T Consensus 16 ~k~~i~~e~~~~e~ee~~L~e~~k-E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 16 LKNEILQEVESLENEEKCLEEYRK-EMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555565555555433333333 3456667777777777666666666666665555555544444433333
No 223
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=40.74 E-value=5.5e+02 Score=30.03 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=13.8
Q ss_pred eeecc--ccchhhhhcccccccccc
Q psy588 358 YYMNF--HIIKEKMTNIKNELGLET 380 (903)
Q Consensus 358 ~~~~~--~~~~~k~~~~~~~~~~~~ 380 (903)
.|+.- +++.|=|-.|+|-+-++-
T Consensus 201 ~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 201 AYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44443 667777777776655443
No 224
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=40.63 E-value=4.3e+02 Score=27.28 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 274 IENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 274 sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
.++|+..|..+.+.++.+...|..+...
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456666677777777776666644433
No 225
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=40.52 E-value=1.5e+02 Score=29.59 Aligned_cols=62 Identities=31% Similarity=0.279 Sum_probs=0.0
Q ss_pred hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQ 282 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LK 282 (903)
|.|+.+..+||.||....+ .|..|+++... .|..++.-......|+
T Consensus 23 e~ll~~~~~LE~qL~~~~~---------~l~lLq~e~~~-------------------------~e~~le~d~~~L~~Le 68 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLH---------QLELLQEEIEK-------------------------EEAALERDYEYLQELE 68 (160)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHH
Q psy588 283 ELLDRNRDELEEIIKK 298 (903)
Q Consensus 283 eq~E~Lq~EL~EL~~K 298 (903)
.-...+..+|.+...+
T Consensus 69 ~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 69 KNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHhc
No 226
>KOG2412|consensus
Probab=40.43 E-value=3.2e+02 Score=33.46 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=17.2
Q ss_pred chhhHHHHHhHHH--HhHHHhHhhhcccchhH
Q psy588 602 SSASLQSQLNDAL--DNIKKYKEEHSKMTMEI 631 (903)
Q Consensus 602 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 631 (903)
.+|++-.-.-+++ .-.+.|.....||-.=|
T Consensus 521 ~tatll~s~Lq~aG~~L~q~Yg~Qf~Klli~i 552 (591)
T KOG2412|consen 521 TTATLLNSFLQTAGFGLLQRYGSQFLKLLILI 552 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555433333322 23678888888886655
No 227
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.29 E-value=1.3e+02 Score=30.18 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=10.6
Q ss_pred HHHHHhhhHhHHHHHHHHHHHH
Q psy588 313 IDQLLNSNQEKSNTLEKLQYET 334 (903)
Q Consensus 313 ~~~L~~~~qEKqell~~v~~~~ 334 (903)
...+..+.+|...+..+++...
T Consensus 115 ~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 115 REEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554443
No 228
>KOG3091|consensus
Probab=40.19 E-value=3.6e+02 Score=32.64 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=24.4
Q ss_pred HHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhh
Q psy588 192 ADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRD 238 (903)
Q Consensus 192 AE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeE 238 (903)
...++....+|+.|..|+..|=.++.. +.+++..|..|.+.
T Consensus 403 r~~G~~L~~~EE~Lr~Kldtll~~ln~------Pnq~k~Rl~~L~e~ 443 (508)
T KOG3091|consen 403 RKRGYALTPDEEELRAKLDTLLAQLNA------PNQLKARLDELYEI 443 (508)
T ss_pred hccCCcCCccHHHHHHHHHHHHHHhcC------hHHHHHHHHHHHHH
Confidence 345555566777777777666666554 25566666555543
No 229
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.71 E-value=2.7e+02 Score=33.46 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q psy588 262 QKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKK 298 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K 298 (903)
.+++.+++.......|-..||++...+-.+.++..+.
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~ 109 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS 109 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 4444455444444444445555555554454444443
No 230
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=39.56 E-value=3.8e+02 Score=26.34 Aligned_cols=39 Identities=15% Similarity=0.375 Sum_probs=17.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy588 266 DTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVT 304 (903)
Q Consensus 266 ElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt 304 (903)
.+++.+...+.-....++.+..++.-++....+|.-...
T Consensus 98 ~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~r 136 (151)
T PF11559_consen 98 QLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELR 136 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444555555555554444
No 231
>KOG4603|consensus
Probab=39.25 E-value=5.2e+02 Score=27.79 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------hhhhhhc-----hHHHHHhhhHhHHHHHHHH
Q psy588 264 CQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVT--------KNKEFES-----TIDQLLNSNQEKSNTLEKL 330 (903)
Q Consensus 264 LeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt--------~~~~kES-----~~~~L~~~~qEKqell~~v 330 (903)
++++|.+.+.+..||.-.++++..++.-...++.+-.+++. .|+.... ....++.+-.-+.++.+++
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~~pk~ksel~eel 197 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKLLEGLPKKKSELYEEL 197 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHh
Confidence 56788889999999999999999988777666665444443 3333332 1122235555666666555
Q ss_pred HH
Q psy588 331 QY 332 (903)
Q Consensus 331 ~~ 332 (903)
-|
T Consensus 198 GI 199 (201)
T KOG4603|consen 198 GI 199 (201)
T ss_pred Cc
Confidence 43
No 232
>KOG0999|consensus
Probab=39.12 E-value=8.6e+02 Score=30.31 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHH
Q psy588 186 IDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYEN 244 (903)
Q Consensus 186 ~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~ 244 (903)
....++|+.|...+-.-..|..+.+-||..+.. .|-+|-++++--..|..
T Consensus 29 ~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~---------~R~Eldqtkeal~q~~s 78 (772)
T KOG0999|consen 29 EEKIQAAEYGLELLEEKEDLKQQLEELEAEYDL---------ARTELDQTKEALGQYRS 78 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 344455666665554444455555555544433 44455555554444443
No 233
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=38.83 E-value=1.3e+02 Score=33.64 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 250 MKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 250 LrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
|+++-++--+++.+|++.+..|...+.++..++..|+....+...+..+...
T Consensus 223 l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~ 274 (344)
T PF12777_consen 223 LEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEE 274 (344)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555555555555555555555555555555555555444433
No 234
>KOG3156|consensus
Probab=38.27 E-value=2.1e+02 Score=31.29 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 275 ENECSNLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 275 E~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
+.|-..+|..+|.++.+++.+..+..+++++
T Consensus 115 ~sEF~~lr~e~EklkndlEk~ks~lr~ei~~ 145 (220)
T KOG3156|consen 115 RSEFANLRAENEKLKNDLEKLKSSLRHEISK 145 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999999999999988776
No 235
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=38.25 E-value=6.5e+02 Score=28.67 Aligned_cols=163 Identities=15% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHh----ccCChhHHHHHHHHHh----hhhHHHHHHHHHH
Q psy588 178 LSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYS----KSFTDDKLRDEIKLLH----RDKSTYENQLKEV 249 (903)
Q Consensus 178 LaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~s----KN~tEDklRkeLlqLq----eEK~~YE~~AKES 249 (903)
+..|+..+..+...-...-...-.|..|+.+|.-|+.+|..-. .+..-..+..++..+- +-...-+..|.++
T Consensus 109 ~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~ea 188 (294)
T COG1340 109 IKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEA 188 (294)
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhc-hHHHHHhhhHh--HHHH
Q psy588 250 MKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFES-TIDQLLNSNQE--KSNT 326 (903)
Q Consensus 250 LrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES-~~~~L~~~~qE--Kqel 326 (903)
+..|++=+.+.++..++-..-...-.+........+.+..+..++.+++.+.....+.+.+ ++........| ++..
T Consensus 189 -qe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~~ee~kera 267 (294)
T COG1340 189 -QEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERA 267 (294)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhccccc
Q psy588 327 LEKLQYETLQAQKQLDA 343 (903)
Q Consensus 327 l~~v~~~~~~~~~~~~~ 343 (903)
+.=++-+.+|..++.
T Consensus 268 --~ei~EKfk~GekLt~ 282 (294)
T COG1340 268 --EEIYEKFKRGEKLTT 282 (294)
T ss_pred --HHHHHHHhCCCCCCH
No 236
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=38.05 E-value=27 Score=27.71 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.1
Q ss_pred CceeeCCEecCCCCCCCCCeecCCCCEE
Q psy588 79 NGTFVNNQRLSKTNEESAPHELCSGDVV 106 (903)
Q Consensus 79 NGTFVNGqRLs~g~~eSePveL~dGDII 106 (903)
++.+|||+.+... .+.+.+||+|
T Consensus 26 g~V~VNg~~v~~~-----~~~v~~~d~I 48 (48)
T PF01479_consen 26 GRVKVNGKVVKDP-----SYIVKPGDVI 48 (48)
T ss_dssp TTEEETTEEESST-----TSBESTTEEE
T ss_pred CEEEECCEEEcCC-----CCCCCCcCCC
Confidence 5889999999853 3789999987
No 237
>PRK12705 hypothetical protein; Provisional
Probab=37.93 E-value=8.1e+02 Score=29.68 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=44.3
Q ss_pred ccceeeccccchhhhhcccccccccccccccccccc-chhhhhhhhccchhh-----hhccccccCCCchhHhHHHHH--
Q psy588 355 LKNYYMNFHIIKEKMTNIKNELGLETKVDQNILVKY-FDDVHQILTQFDEYF-----LRFNESESSGLNSIEDIEKVT-- 426 (903)
Q Consensus 355 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-- 426 (903)
+-+.-|-|.+|-.-=.||+- |-.-|.+| +++.- |..|. +.-||.+. .+...--..|.-...-|+++-
T Consensus 204 lp~demkGriIGreGrNir~-~E~~tGvd--liiddtp~~V~--ls~fdp~rreia~~~l~~Li~dgri~p~rIeevv~~ 278 (508)
T PRK12705 204 IPSDAMKGRIIGREGRNIRA-FEGLTGVD--LIIDDTPEAVV--ISSFNPIRREIARLTLEKLLADGRIHPARIEEYVQK 278 (508)
T ss_pred cCChHhhccccCccchhHHH-HHHhhCCc--eEecCCccchh--hcccCccchHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 33444667666444445542 44455555 22222 33321 33344332 122233334444445555554
Q ss_pred --HHHHHHHHHHHHHHhHHHHHHhcChhhhHhhh
Q psy588 427 --KDLREQLHTAQEEYTSLQEIVNRNEEQLAFLE 458 (903)
Q Consensus 427 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (903)
+.+++.+..+-++...-.-|...|.+-+.+|-
T Consensus 279 ~~~~~~~~i~~~ge~a~~~lgi~~~~~~li~~Lg 312 (508)
T PRK12705 279 ANEEFKQKIYEIGEEVLEELGIFDLKPGLVRLLG 312 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 44555555555544443444455555444443
No 238
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=37.86 E-value=6.7e+02 Score=28.69 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=70.3
Q ss_pred hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQ 282 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LK 282 (903)
|-|-.|+..||-.-. .+|.+...|-.+..+||....--+.--.++-.+|-.++..+...|+.-..+|..-+
T Consensus 163 e~Lq~Klk~LEeEN~---------~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQ 233 (306)
T PF04849_consen 163 EALQEKLKSLEEENE---------QLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQ 233 (306)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 666666666666444 46778888988888999987777777778888899999999999998888888888
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q psy588 283 ELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 283 eq~E~Lq~EL~EL~~K~sE 301 (903)
+....|..++-.+..++..
T Consensus 234 EEIt~LlsqivdlQ~r~k~ 252 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQ 252 (306)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666555
No 239
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=37.21 E-value=9.9e+02 Score=30.48 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy588 227 KLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKN 306 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~ 306 (903)
.+.+++..|+.+|.+.+. .|.+..+.--....+|+++|..+.....++...++.......++.-...++....+++
T Consensus 593 el~eelE~le~eK~~Le~----~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~ 668 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEM----ELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRL 668 (769)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455666666666655433 2333333334445566666666666666666666666666666666666665544443
Q ss_pred h
Q psy588 307 K 307 (903)
Q Consensus 307 ~ 307 (903)
.
T Consensus 669 ~ 669 (769)
T PF05911_consen 669 K 669 (769)
T ss_pred h
Confidence 3
No 240
>KOG0243|consensus
Probab=37.02 E-value=9.7e+02 Score=31.65 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHH
Q psy588 259 EVMQKCQDTERKLVNIENECSNLQELLDRNRDELEE 294 (903)
Q Consensus 259 EA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~E 294 (903)
....++..++..|.+...||..+++.+..++..|.+
T Consensus 480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~ 515 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKE 515 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555444433
No 241
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=37.02 E-value=3.4e+02 Score=30.19 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=57.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy588 231 EIKLLHRDKSTYENQLKEVMKKMLAEKV------EVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVT 304 (903)
Q Consensus 231 eLlqLqeEK~~YE~~AKESLrKlLQEKl------EA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt 304 (903)
.+.++..-|.+|+...|+.---.-++.- -.-.++..++..+..+.++...-++.|+..=.+|.....+|.+..+
T Consensus 131 ~~kkv~~aKk~Y~~aCk~e~~A~~~~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~ 210 (258)
T cd07679 131 KLKEVEAAKKAYHTACKEEKLATSREANSKADPALNPEQLKKLQDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENME 210 (258)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5667778889999887776655555542 2235566777888888889999999999999999999999999666
Q ss_pred h
Q psy588 305 K 305 (903)
Q Consensus 305 ~ 305 (903)
.
T Consensus 211 ~ 211 (258)
T cd07679 211 Q 211 (258)
T ss_pred H
Confidence 5
No 242
>KOG4593|consensus
Probab=36.81 E-value=9.8e+02 Score=30.31 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=44.3
Q ss_pred hhhHhhHHHHHHHHHHHHhccCC--hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy588 202 EDRLLSRVEFLESQLAAYSKSFT--DDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECS 279 (903)
Q Consensus 202 EDrLLSRIE~LEnQLq~~sKN~t--EDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~ 279 (903)
|+.|-..++..=|+.+..-+... -+.....+++|...+.+ ++.++-++-.+..--..++..+.-++.+.+.+..
T Consensus 121 e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k----~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~ 196 (716)
T KOG4593|consen 121 EEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNK----LDSSLSELQWEVMLQEMRAKRLHSELQNEEKELD 196 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555322111 11223344444444444 4455555555555555666666666666665555
Q ss_pred HHHHHHHHhHHHHHHHHH
Q psy588 280 NLQELLDRNRDELEEIIK 297 (903)
Q Consensus 280 ~LKeq~E~Lq~EL~EL~~ 297 (903)
.-+.++........+..+
T Consensus 197 ~~~~ql~~~~q~~~~~~~ 214 (716)
T KOG4593|consen 197 RQHKQLQEENQKIQELQA 214 (716)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444333333
No 243
>PRK11281 hypothetical protein; Provisional
Probab=36.78 E-value=8.4e+02 Score=32.29 Aligned_cols=141 Identities=15% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHH---------H
Q psy588 175 KNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYEN---------Q 245 (903)
Q Consensus 175 EqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~---------~ 245 (903)
+.-...|+.-+.-..++ +.-..+.+.|..++....+ ++.+...+...+.. .
T Consensus 59 k~~~~~l~~tL~~L~qi-----------~~~~~~~~~L~k~l~~Ap~---------~l~~a~~~Le~Lk~~~~~~~~~~~ 118 (1113)
T PRK11281 59 KLVQQDLEQTLALLDKI-----------DRQKEETEQLKQQLAQAPA---------KLRQAQAELEALKDDNDEETRETL 118 (1113)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHhhccccccccccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchH-----HHHHhhh
Q psy588 246 LKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTI-----DQLLNSN 320 (903)
Q Consensus 246 AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~-----~~L~~~~ 320 (903)
++.++..+-+.-.+.++.+++.|+.|+........++.+.+..|..+.+......+--++.+.--.-. .+...++
T Consensus 119 ~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ 198 (1113)
T PRK11281 119 STLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQ 198 (1113)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHH
Q psy588 321 QEKSNTLEKLQYETL 335 (903)
Q Consensus 321 qEKqell~~v~~~~~ 335 (903)
.|-.-+..++++.++
T Consensus 199 ae~~~l~~~~~~~~~ 213 (1113)
T PRK11281 199 AEQALLNAQNDLQRK 213 (1113)
T ss_pred HHHHHHHHHHHHHHH
No 244
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=36.70 E-value=3.3e+02 Score=31.91 Aligned_cols=12 Identities=8% Similarity=0.429 Sum_probs=4.8
Q ss_pred HHHHHHHHhhhh
Q psy588 228 LRDEIKLLHRDK 239 (903)
Q Consensus 228 lRkeLlqLqeEK 239 (903)
+.++|.++.+..
T Consensus 217 ~~~el~eik~~~ 228 (395)
T PF10267_consen 217 ILEELREIKESQ 228 (395)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 245
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=36.62 E-value=3.1e+02 Score=24.48 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q psy588 250 MKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRN 288 (903)
Q Consensus 250 LrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~L 288 (903)
|.|+-..-+.+.++|++.+.-....+.|+..|+.+.+.+
T Consensus 20 L~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 20 LTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555556666666666666666666666666555444
No 246
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=36.60 E-value=42 Score=28.16 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=19.2
Q ss_pred CceeeCCEecCCCCCCCCCeecCCCCEEEE
Q psy588 79 NGTFVNNQRLSKTNEESAPHELCSGDVVQF 108 (903)
Q Consensus 79 NGTFVNGqRLs~g~~eSePveL~dGDIIrL 108 (903)
...+|||+++... .+.|..||.|.|
T Consensus 34 G~V~VNg~~~~~~-----~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGELENRR-----GKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCEEccCC-----CCCCCCCCEEEe
Confidence 3678899988442 378999999986
No 247
>PRK01156 chromosome segregation protein; Provisional
Probab=36.59 E-value=9.5e+02 Score=30.05 Aligned_cols=16 Identities=13% Similarity=0.490 Sum_probs=7.3
Q ss_pred ccchhhhhHHHHhhhc
Q psy588 468 IGGLELQLEKLKQTYN 483 (903)
Q Consensus 468 ~~~~~~~~~~~~~~~~ 483 (903)
+.+++..++.|.+.|+
T Consensus 531 l~~~~~~l~~le~~~~ 546 (895)
T PRK01156 531 LEDIKIKINELKDKHD 546 (895)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444454544443
No 248
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=35.74 E-value=1e+03 Score=30.19 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 159 QLNTCIQEALQRENMLKNKLSKLQHIVIDLKKA 191 (903)
Q Consensus 159 QLSqYLqEALqREqmLEqKLaiLQeIL~~Tk~A 191 (903)
+-..-|+|..-||.-+..++..|+.=+...+..
T Consensus 17 ~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~ 49 (717)
T PF09730_consen 17 REESLLQESASKEAYLQQRILELENELKQLRQE 49 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334557788888888888888887766655444
No 249
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=35.74 E-value=5.2e+02 Score=29.60 Aligned_cols=28 Identities=36% Similarity=0.501 Sum_probs=17.2
Q ss_pred hhHhHHHHH---HHHHHHHHHHHHHHhHHHH
Q psy588 418 SIEDIEKVT---KDLREQLHTAQEEYTSLQE 445 (903)
Q Consensus 418 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 445 (903)
.|-||+++- +-+.+.|..+|+|...+.-
T Consensus 187 rivDIDaLi~ENRyL~erl~q~qeE~~l~k~ 217 (319)
T PF09789_consen 187 RIVDIDALIMENRYLKERLKQLQEEKELLKQ 217 (319)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666665 5666777777777665543
No 250
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.45 E-value=3.1e+02 Score=30.67 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhc
Q psy588 260 VMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFES 311 (903)
Q Consensus 260 A~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES 311 (903)
..+++.+++..+...+.|+..|-.+.+.++...+++.++..+--+..+.++.
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~ 87 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQK 87 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777666666655444444443
No 251
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=35.35 E-value=1e+03 Score=30.03 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=12.4
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q psy588 283 ELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 283 eq~E~Lq~EL~EL~~K~sE 301 (903)
++..-...||.++..+|-.
T Consensus 455 ~~~~~i~~el~~ik~kfg~ 473 (738)
T TIGR01061 455 ARNKLLKKQLEEYKKQFAQ 473 (738)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 3455566777777777764
No 252
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=35.10 E-value=8.4e+02 Score=29.01 Aligned_cols=14 Identities=43% Similarity=0.665 Sum_probs=8.9
Q ss_pred chhhhhHHHHhhhc
Q psy588 470 GLELQLEKLKQTYN 483 (903)
Q Consensus 470 ~~~~~~~~~~~~~~ 483 (903)
+|.+|||++-.-|.
T Consensus 417 al~lqlErl~~~l~ 430 (511)
T PF09787_consen 417 ALRLQLERLETQLK 430 (511)
T ss_pred hccccHHHHHHHHH
Confidence 45677777766554
No 253
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=35.03 E-value=4.3e+02 Score=25.64 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=11.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHH
Q psy588 266 DTERKLVNIENECSNLQELLDRNRDELEE 294 (903)
Q Consensus 266 ElERsL~~sE~EC~~LKeq~E~Lq~EL~E 294 (903)
.++..+...++++..++++++.++..+++
T Consensus 105 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 105 ELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 254
>PRK00106 hypothetical protein; Provisional
Probab=34.53 E-value=8e+02 Score=29.92 Aligned_cols=100 Identities=18% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy588 228 LRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEV---MQ-KCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQV 303 (903)
Q Consensus 228 lRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA---~q-KLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqv 303 (903)
.++-..+..+.+..+...|++-+++.-+|--.- .+ ++.+.|+.|..-++.+..=.+.++.-+.+|.........+.
T Consensus 59 ~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~re 138 (535)
T PRK00106 59 KKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKS 138 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhchHHHHHhhhHhHHHHHHHH
Q psy588 304 TKNKEFESTIDQLLNSNQEKSNTLEKL 330 (903)
Q Consensus 304 t~~~~kES~~~~L~~~~qEKqell~~v 330 (903)
..+..++. ++..+.++...-|+++
T Consensus 139 eeLee~~~---~~~~~~~~~~~~Le~~ 162 (535)
T PRK00106 139 KHIDEREE---QVEKLEEQKKAELERV 162 (535)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHH
No 255
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=34.49 E-value=8.9e+02 Score=29.12 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=5.3
Q ss_pred hhhhhccccccc
Q psy588 366 KEKMTNIKNELG 377 (903)
Q Consensus 366 ~~k~~~~~~~~~ 377 (903)
.+++..+..++.
T Consensus 454 ~~~i~~l~~~L~ 465 (569)
T PRK04778 454 SDEIEALAEELE 465 (569)
T ss_pred HHHHHHHHHHhc
Confidence 444444444443
No 256
>smart00363 S4 S4 RNA-binding domain.
Probab=34.42 E-value=53 Score=25.22 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=20.2
Q ss_pred CceeeCCEecCCCCCCCCCeecCCCCEEEEcC
Q psy588 79 NGTFVNNQRLSKTNEESAPHELCSGDVVQFGV 110 (903)
Q Consensus 79 NGTFVNGqRLs~g~~eSePveL~dGDIIrLG~ 110 (903)
.+.+|||+++... ...+..||.|.+-.
T Consensus 26 g~i~vng~~~~~~-----~~~l~~gd~i~~~~ 52 (60)
T smart00363 26 GRVKVNGKKVTKP-----SYIVKPGDVISVRG 52 (60)
T ss_pred CCEEECCEEecCC-----CeEeCCCCEEEEcc
Confidence 4788999998331 36799999988754
No 257
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=34.35 E-value=7.2e+02 Score=27.98 Aligned_cols=142 Identities=18% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc-------hhhhHhhHHHHHHHHHHHHhccCChhHH
Q psy588 158 YQLNTCIQEALQRENMLKNKL--SKLQHIVIDLKKAADVSWKALI-------QEDRLLSRVEFLESQLAAYSKSFTDDKL 228 (903)
Q Consensus 158 yQLSqYLqEALqREqmLEqKL--aiLQeIL~~Tk~AAE~sWqaLI-------dEDrLLSRIE~LEnQLq~~sKN~tEDkl 228 (903)
|.+..-.-+.+.|..-|+.+| +.|+.............-...- .=..+......|..||.+|.. .=+.|
T Consensus 151 ye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~--Kf~ef 228 (309)
T PF09728_consen 151 YELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSE--KFEEF 228 (309)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy588 229 RDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKE 308 (903)
Q Consensus 229 RkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~ 308 (903)
...|.+.++==.+|- +..+.+-.....+|.|+..|+..++.....+-++++........+..
T Consensus 229 q~tL~kSNe~F~tfk------------------~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~ 290 (309)
T PF09728_consen 229 QDTLNKSNEVFETFK------------------KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEK 290 (309)
T ss_pred HHHHHHhHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred hhchHHHHHhh
Q psy588 309 FESTIDQLLNS 319 (903)
Q Consensus 309 kES~~~~L~~~ 319 (903)
+..-.+.|+++
T Consensus 291 ~~~k~~kLe~L 301 (309)
T PF09728_consen 291 LKKKIEKLEKL 301 (309)
T ss_pred HHHHHHHHHHH
No 258
>KOG4403|consensus
Probab=33.78 E-value=1.3e+02 Score=35.68 Aligned_cols=16 Identities=50% Similarity=0.603 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy588 422 IEKVTKDLREQLHTAQ 437 (903)
Q Consensus 422 ~~~~~~~~~~~~~~~~ 437 (903)
+++||.-+||.+|.-|
T Consensus 406 l~evtt~lrErl~RWq 421 (575)
T KOG4403|consen 406 LSEVTTLLRERLHRWQ 421 (575)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666666554
No 259
>KOG1961|consensus
Probab=33.69 E-value=1.1e+03 Score=29.75 Aligned_cols=199 Identities=16% Similarity=0.205 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy588 207 SRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLD 286 (903)
Q Consensus 207 SRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E 286 (903)
+..-+||-=++...++ -++++-++.++.-++-..|.+..+..|+|+...+.+---+..+...++-+-..-|..+=++.+
T Consensus 17 ~~~~~le~~~~~~~~~-~~~e~v~~~lktg~~lr~y~~~ve~~l~k~e~~Siqdyi~es~~~~~lhNqi~~cd~Vl~rme 95 (683)
T KOG1961|consen 17 SEDISLEEVLSQLQEC-LDDELVKEALKTGDDLREYSKQVENELRKAERKSIQDYIKESENLASLHNQIRACDSVLERME 95 (683)
T ss_pred hhHHHHHHHHHHHHHh-cchHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhHhhhHHHHHHHHHHHH
Confidence 5555566544444433 445555677888899999999999999999998888666666677777777777776655544
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhh-chHHHHHhhhHhHHHHHHHHHHHHHhhhccccccccccccccc---cccc--eee
Q psy588 287 RNRDELEEIIKKYQDQVTKNKEFE-STIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHD---KLKN--YYM 360 (903)
Q Consensus 287 ~Lq~EL~EL~~K~sEqvt~~~~kE-S~~~~L~~~~qEKqell~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~ 360 (903)
..-..-+.-...++......+++- +|...|++...=+.+|-+- -+-+-+++-.|++ -.-| -|+
T Consensus 96 ~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~f-----------Vdd~iVpp~lI~~I~~g~vne~~f~ 164 (683)
T KOG1961|consen 96 TMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQF-----------VDDLIVPPELIKTIVDGDVNEPEFL 164 (683)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHH-----------hccccCCHHHHHHHHcCCCCchHHH
Confidence 443333333344444444433332 2444555544444444333 3344555555332 1111 111
Q ss_pred cc-ccchhhhhccccccccccccccccccccchhhhhhhhccchhhhhccccccCCCchhHhHHHHHHHHHHHHHHHHHH
Q psy588 361 NF-HIIKEKMTNIKNELGLETKVDQNILVKYFDDVHQILTQFDEYFLRFNESESSGLNSIEDIEKVTKDLREQLHTAQEE 439 (903)
Q Consensus 361 ~~-~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (903)
-- |++..|+.-++-.-+.-. -|.++|+|+++.-. -...|++||.-+-+.|+++..-
T Consensus 165 ~~LeeL~~Kl~~v~~dq~~k~-------a~a~~Dv~~lLdkL----------------R~KAi~kir~~IlqkI~~fRkp 221 (683)
T KOG1961|consen 165 EALEELSHKLKLVELDQSNKD-------AKALKDVEPLLDKL----------------RLKAIEKIREFILQKIKAFRKP 221 (683)
T ss_pred HHHHHHHHHHHhhhhhhhccc-------hhhhhhHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHhCC
Confidence 11 666677765553333322 23388999988654 2457889988888887776554
Q ss_pred H
Q psy588 440 Y 440 (903)
Q Consensus 440 ~ 440 (903)
.
T Consensus 222 ~ 222 (683)
T KOG1961|consen 222 M 222 (683)
T ss_pred C
Confidence 3
No 260
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.53 E-value=3.9e+02 Score=24.99 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy588 262 QKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKY 299 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~ 299 (903)
+..++++++...++.|-..+|+.+..-|+.++-|..|.
T Consensus 39 ~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 39 QEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44445555555556666666666555556665555543
No 261
>KOG1003|consensus
Probab=32.40 E-value=6.9e+02 Score=27.22 Aligned_cols=132 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy588 226 DKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDT---ERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQ 302 (903)
Q Consensus 226 DklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeEl---ERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEq 302 (903)
.+++..+..++++-...|..++.+++|+-+---.+.+..-.+ +....-.+..+..+..++...+.=-.+.-.||.+.
T Consensus 7 a~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEV 86 (205)
T KOG1003|consen 7 AALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEV 86 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhhc-hHHHHHhhhHhHHHHHHHHHHHHHhhhccccccccccccccccccce
Q psy588 303 VTKNKEFES-TIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHDKLKNY 358 (903)
Q Consensus 303 vt~~~~kES-~~~~L~~~~qEKqell~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (903)
.-++-..|. +-....+.+....++. +++.+.-.-++-++.|..+.-|..-+.-.|
T Consensus 87 arkL~iiE~dLE~~eeraE~~Es~~~-eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~ 142 (205)
T KOG1003|consen 87 ARKLVIIEGELERAEERAEAAESQSE-ELEEDLRILDSNLKSLSAKEEKLEQKEEKY 142 (205)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHhHhHHHHHHHHHHHHhhhHHHH
No 262
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.34 E-value=5.5e+02 Score=26.48 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 262 QKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
..+.+.++......+|...++-+++.++..+..+.....+.+.+
T Consensus 137 ~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 137 EELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666666555555544
No 263
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=32.33 E-value=6.8e+02 Score=27.14 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=42.6
Q ss_pred hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQ 282 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LK 282 (903)
+++..+.+-+|++-..--....+ . --.+....|..||..++ +++..++ .+...+..+++.+..++.....++
T Consensus 62 ~~~~~~~~k~e~~A~~Al~~g~E-~---LAr~al~~~~~le~~~~-~~~~~~~---~~~~~~~~l~~~~~~Le~Ki~e~~ 133 (225)
T COG1842 62 EEAQARAEKLEEKAELALQAGNE-D---LAREALEEKQSLEDLAK-ALEAELQ---QAEEQVEKLKKQLAALEQKIAELR 133 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCH-H---HHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666654442222222 1 12234455666665543 3333333 334455556666776677776776
Q ss_pred HHHHHhHHHHH
Q psy588 283 ELLDRNRDELE 293 (903)
Q Consensus 283 eq~E~Lq~EL~ 293 (903)
.+.+.+...+.
T Consensus 134 ~~~~~l~ar~~ 144 (225)
T COG1842 134 AKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHH
Confidence 66666555443
No 264
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=32.11 E-value=4.9e+02 Score=25.39 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=24.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy588 231 EIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIEN 276 (903)
Q Consensus 231 eLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~ 276 (903)
.|..+.+-+..-+..|+..|.++..+.-.+..+|..++.-....++
T Consensus 6 rL~~vL~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~ 51 (146)
T PRK07720 6 RLQKVLELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQ 51 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566666666665555555555555544444443
No 265
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=31.96 E-value=9.8e+02 Score=28.85 Aligned_cols=112 Identities=16% Similarity=0.195 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhch------hhhHhhHHHHHHHHHHHHhc---cCChhHHHHHHHHHhhhhHH-HH
Q psy588 174 LKNKLSKLQHIVIDLKKAADVSWKALIQ------EDRLLSRVEFLESQLAAYSK---SFTDDKLRDEIKLLHRDKST-YE 243 (903)
Q Consensus 174 LEqKLaiLQeIL~~Tk~AAE~sWqaLId------EDrLLSRIE~LEnQLq~~sK---N~tEDklRkeLlqLqeEK~~-YE 243 (903)
++.=+..|+..|+.-...-..+...|.+ +..+-.++..++.+|..+.+ ++.-+.+++.+..+.++... |.
T Consensus 213 IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd 292 (560)
T PF06160_consen 213 IPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYD 292 (560)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555444444455554443 35677788888888877655 56667788888887766533 44
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy588 244 NQLKEVMKKMLAEKV--EVMQKCQDTERKLVNIENECSNLQELL 285 (903)
Q Consensus 244 ~~AKESLrKlLQEKl--EA~qKLeElERsL~~sE~EC~~LKeq~ 285 (903)
.+-||.-.|-.-++. .....+..+.+....+..|..+++..|
T Consensus 293 ~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY 336 (560)
T PF06160_consen 293 ILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSY 336 (560)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444333322222 233445555555666666666666543
No 266
>PF05514 HR_lesion: HR-like lesion-inducing ; InterPro: IPR008637 This is a family of plant proteins that are associated with the hypersensitive response (HR) pathway of defence against plant pathogens.
Probab=31.96 E-value=29 Score=35.11 Aligned_cols=20 Identities=45% Similarity=0.903 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhhhhHHhhhh
Q psy588 875 IIMFLVILTPIMYSFENILS 894 (903)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~ 894 (903)
.++++++.|||||.|-|.-.
T Consensus 91 Lll~l~~~Tpi~~dFyn~~~ 110 (138)
T PF05514_consen 91 LLLYLAIVTPILYDFYNYDS 110 (138)
T ss_pred HHHHHHHHHHHhhhhhccCC
Confidence 46789999999999988643
No 267
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=31.91 E-value=29 Score=31.00 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=18.7
Q ss_pred CceeeCCEecCCCCCCCCCeecCCCCEEEEcCceee
Q psy588 79 NGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDVIE 114 (903)
Q Consensus 79 NGTFVNGqRLs~g~~eSePveL~dGDIIrLG~tVLr 114 (903)
+..+|||..-...+ ..|++||+|.|++..++
T Consensus 33 g~V~VNGe~e~rrg-----~Kl~~GD~V~~~~~~~~ 63 (65)
T PF13275_consen 33 GEVKVNGEVETRRG-----KKLRPGDVVEIDGEEYR 63 (65)
T ss_dssp HHHEETTB----SS---------SSEEEEETTEEEE
T ss_pred CceEECCEEccccC-----CcCCCCCEEEECCEEEE
Confidence 47889998877643 68999999999887664
No 268
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.80 E-value=3.1e+02 Score=30.48 Aligned_cols=56 Identities=25% Similarity=0.392 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 247 KEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 247 KESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
|+.|.+-++| .+.++++.+..|...+.|.++|.+.+..+.-+...|..++++..-.
T Consensus 151 keeL~~elee---le~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 151 KEELLKELEE---LEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 4445554443 3455666666677777777777776666666666666666665544
No 269
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=31.66 E-value=1.9e+02 Score=27.55 Aligned_cols=50 Identities=14% Similarity=0.278 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHhhhhhhc
Q psy588 262 QKCQDTERKLVNIENECSNL--QELLDRNRDELEEIIKKYQDQVTKNKEFES 311 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~L--Keq~E~Lq~EL~EL~~K~sEqvt~~~~kES 311 (903)
+++.+.++.+...|.++.++ +.....++.++.++..+...-..+.+...+
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 55666777777888888888 888888888888888877776555444443
No 270
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=31.53 E-value=5e+02 Score=25.34 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=31.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy588 232 IKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQEL 284 (903)
Q Consensus 232 LlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq 284 (903)
|..+.+++.. .-+..+..+-+.+-+|...+.+.+..+..+..|....++.
T Consensus 29 i~~~l~~R~~---~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~ 78 (156)
T PRK05759 29 IMKALEERQK---KIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQ 78 (156)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 3455566666666777777777777777777777666543
No 271
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.14 E-value=7e+02 Score=26.92 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHH
Q psy588 274 IENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNT 326 (903)
Q Consensus 274 sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqel 326 (903)
.++|...+|..+..++++-..|.+.....++. ..++...+..++.|.-++
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE---~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKE---QQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHH
Confidence 34555566666666656555555554443333 223333445555555555
No 272
>PRK10963 hypothetical protein; Provisional
Probab=30.97 E-value=84 Score=33.17 Aligned_cols=66 Identities=26% Similarity=0.272 Sum_probs=50.3
Q ss_pred chhhhhhhhccchhhhhccc-------c-ccCCCchhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhcChhhhHhhh
Q psy588 391 FDDVHQILTQFDEYFLRFNE-------S-ESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLE 458 (903)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (903)
.++|...+.+|.+||.+.-+ . .+.| .|.-+|.--..+|+.+..++++++.|-.+.++|+....-+.
T Consensus 5 ~~~V~~yL~~~PdFf~~h~~Ll~~L~lph~~~g--aVSL~ErQ~~~LR~r~~~Le~~l~~Li~~A~~Ne~l~~~~~ 78 (223)
T PRK10963 5 DRAVVDYLLQNPDFFIRNARLVEQMRVPHPVRG--TVSLVEWQMARQRNHIHVLEEEMTLLMEQAIANEDLFYRLL 78 (223)
T ss_pred HHHHHHHHHHCchHHhhCHHHHHhccCCCCCCC--eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777765432 1 2344 78888888899999999999999999999999998765443
No 273
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=30.83 E-value=1.4e+03 Score=30.37 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=20.9
Q ss_pred HHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 232 IKLLHRDKSTYENQLKE---VMKKMLAEKVEVMQKCQDTERKLV 272 (903)
Q Consensus 232 LlqLqeEK~~YE~~AKE---SLrKlLQEKlEA~qKLeElERsL~ 272 (903)
+.+++++-..|+...++ +++.+.|.-.++.++++++++.|.
T Consensus 118 L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~ 161 (1109)
T PRK10929 118 LLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQ 161 (1109)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHh
Confidence 44455555555544433 333334433566666666665543
No 274
>KOG4809|consensus
Probab=30.72 E-value=1.1e+03 Score=29.22 Aligned_cols=13 Identities=38% Similarity=0.447 Sum_probs=7.9
Q ss_pred HHhhhHhHHHHHH
Q psy588 316 LLNSNQEKSNTLE 328 (903)
Q Consensus 316 L~~~~qEKqell~ 328 (903)
|.++.+|+++-+.
T Consensus 551 L~nLr~errk~Le 563 (654)
T KOG4809|consen 551 LANLRIERRKQLE 563 (654)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666553
No 275
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.66 E-value=5.7e+02 Score=25.67 Aligned_cols=86 Identities=22% Similarity=0.321 Sum_probs=45.3
Q ss_pred hHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy588 204 RLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQE 283 (903)
Q Consensus 204 rLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKe 283 (903)
.++.+...+|.||+-+. +.-+++-.+-+|-.-|-.+----++. .|-+| ..+++..+..++..+..|.+
T Consensus 24 ~~~~qk~~le~qL~E~~------~al~Ele~l~eD~~vYk~VG~llvk~---~k~~~---~~eL~er~E~Le~ri~tLek 91 (119)
T COG1382 24 KVILQKQQLEAQLKEIE------KALEELEKLDEDAPVYKKVGNLLVKV---SKEEA---VDELEERKETLELRIKTLEK 91 (119)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHhcCCcccHHHHHhhhHHhhh---hHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777753 34455555666655555443222222 12122 23444555555566666666
Q ss_pred HHHHhHHHHHHHHHHHHH
Q psy588 284 LLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 284 q~E~Lq~EL~EL~~K~sE 301 (903)
+-+.++.++++|.++...
T Consensus 92 Qe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 92 QEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666655444
No 276
>PRK11507 ribosome-associated protein; Provisional
Probab=30.61 E-value=72 Score=29.11 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=25.3
Q ss_pred CceeeCCEecCCCCCCCCCeecCCCCEEEEcCceeee
Q psy588 79 NGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDVIET 115 (903)
Q Consensus 79 NGTFVNGqRLs~g~~eSePveL~dGDIIrLG~tVLr~ 115 (903)
+...|||..-...+ ..|++||+|.|++..+.+
T Consensus 37 g~V~VNGeve~rRg-----kKl~~GD~V~~~g~~~~v 68 (70)
T PRK11507 37 GQVKVDGAVETRKR-----CKIVAGQTVSFAGHSVQV 68 (70)
T ss_pred CceEECCEEecccC-----CCCCCCCEEEECCEEEEE
Confidence 57889998766643 689999999999876643
No 277
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=30.23 E-value=6.5e+02 Score=32.99 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=14.9
Q ss_pred cccccccccchhhhhHHHHhhhcccccccccc
Q psy588 461 KYLHLDKIGGLELQLEKLKQTYNSDCYENEKF 492 (903)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (903)
+|+..+-.||..-.-..+- .|-..|.|+.||
T Consensus 731 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 761 (1021)
T PTZ00266 731 KYLGGAAYGGYSNNHAATG-PYIGNPMESTKY 761 (1021)
T ss_pred ccccccccccccCcccccc-cccCCccccccc
Confidence 4555666666543222222 244455555555
No 278
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=30.05 E-value=7.3e+02 Score=26.74 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHH
Q psy588 155 EELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAA----DVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRD 230 (903)
Q Consensus 155 KELyQLSqYLqEALqREqmLEqKLaiLQeIL~~Tk~AA----E~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRk 230 (903)
+++-++..-+-- ++.|+.-|+..|......- +.+-....+=-.|..|+..||..+.
T Consensus 72 ~DiarvA~lvin-------lE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D------------- 131 (189)
T TIGR02132 72 EDIANVASLVIN-------LEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLD------------- 131 (189)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHH-------------
Confidence 455555444433 6666666666555422221 1222223333444455555544433
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHH
Q psy588 231 EIKLLHRDKSTYENQLKEVMKKMLA 255 (903)
Q Consensus 231 eLlqLqeEK~~YE~~AKESLrKlLQ 255 (903)
.|++|.+-..+-+.-.||.++|.+.
T Consensus 132 ~~L~llE~~~~~~~~~~~~~~~~~~ 156 (189)
T TIGR02132 132 KILELLEGQQKTQDELKETIQKQIK 156 (189)
T ss_pred HHHHHHhcCccchhHHHHHHHHHHh
Confidence 3556666666666667777777665
No 279
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=29.37 E-value=18 Score=43.81 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhHhhhhccccccccccchhhhhH
Q psy588 453 QLAFLEQSKYLHLDKIGGLELQLE 476 (903)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~ 476 (903)
...-|++.+.|-.--+.+|.-||+
T Consensus 400 ~~~RLerq~~L~~kE~d~LR~~L~ 423 (722)
T PF05557_consen 400 LIRRLERQKALATKERDYLRAQLK 423 (722)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555666665554
No 280
>PRK01777 hypothetical protein; Validated
Probab=29.28 E-value=54 Score=30.95 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=24.3
Q ss_pred CCCceeeCCEecCCCCCCCCCeecCCCCEEEEcCcee
Q psy588 77 SSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDVI 113 (903)
Q Consensus 77 STNGTFVNGqRLs~g~~eSePveL~dGDIIrLG~tVL 113 (903)
+.+-..|||+.+.. .+.|++||+|.|=....
T Consensus 48 ~~~~vgI~Gk~v~~------d~~L~dGDRVeIyrPL~ 78 (95)
T PRK01777 48 AKNKVGIYSRPAKL------TDVLRDGDRVEIYRPLL 78 (95)
T ss_pred ccceEEEeCeECCC------CCcCCCCCEEEEecCCC
Confidence 45677899999987 37899999998765543
No 281
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=29.18 E-value=1e+03 Score=30.97 Aligned_cols=91 Identities=24% Similarity=0.373 Sum_probs=57.1
Q ss_pred hhHhhHHHHHHHHHHH-------HhccCChhHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy588 203 DRLLSRVEFLESQLAA-------YSKSFTDDKLR-DEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNI 274 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~-------~sKN~tEDklR-keLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~s 274 (903)
....+|++.+|+||+. ++.......++ +++..+++. +..+-++=.+...++..+.+..+..
T Consensus 739 ~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~-----------~d~~~ee~~el~a~v~~~~~qi~~l 807 (984)
T COG4717 739 TQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEA-----------IDALDEEVEELHAQVAALSRQIAQL 807 (984)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999985 22222222222 333333322 2233333345555666666666665
Q ss_pred H--HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy588 275 E--NECSNLQELLDRNRDELEEIIKKYQDQVT 304 (903)
Q Consensus 275 E--~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt 304 (903)
| ..++.+|.+++.+++++.+.+.++.+..-
T Consensus 808 E~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~ 839 (984)
T COG4717 808 EGGGTVAELRQRRESLKEDLEEKARKWASLRL 839 (984)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 47888999999999999999999988433
No 282
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=29.04 E-value=7.2e+02 Score=27.99 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHH
Q psy588 161 NTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAY 219 (903)
Q Consensus 161 SqYLqEALqREqmLEqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~ 219 (903)
+.|..++.+|++.++.+.....+ .+.++-|.+|+.+++++++.+
T Consensus 144 ~~~~~~~~ekd~~i~~~~~~~e~---------------d~rnq~l~~~i~~l~~~l~~~ 187 (264)
T PF07246_consen 144 EELKKEAEEKDQLIKEKTQEREN---------------DRRNQILSHEISNLTNELSNL 187 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhchhh---------------hhHHHHHHHHHHHhhhhHHHh
Confidence 45666666777666654333333 233566777888888887665
No 283
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=29.01 E-value=73 Score=25.15 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=21.3
Q ss_pred CceeeCCEecCCCCCCCCCeecCCCCEEEEcCc
Q psy588 79 NGTFVNNQRLSKTNEESAPHELCSGDVVQFGVD 111 (903)
Q Consensus 79 NGTFVNGqRLs~g~~eSePveL~dGDIIrLG~t 111 (903)
++.+|||+++... ...+..||+|.+...
T Consensus 26 g~V~vn~~~~~~~-----~~~v~~~d~i~i~~~ 53 (70)
T cd00165 26 GHVLVNGKVVTKP-----SYKVKPGDVIEVDGK 53 (70)
T ss_pred CCEEECCEEccCC-----ccCcCCCCEEEEcCC
Confidence 5788999988432 267899999988753
No 284
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=28.88 E-value=7.5e+02 Score=26.52 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy588 262 QKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVT 304 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt 304 (903)
..+..++..+..++.....|...|...=..|+.+..++.+...
T Consensus 171 k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~~~~~ 213 (239)
T cd07658 171 KEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWESALR 213 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777777777777777777777666443
No 285
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=28.41 E-value=4.4e+02 Score=23.75 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=10.6
Q ss_pred hHHHHHhhhHhHHHHHHHHHH
Q psy588 312 TIDQLLNSNQEKSNTLEKLQY 332 (903)
Q Consensus 312 ~~~~L~~~~qEKqell~~v~~ 332 (903)
+..++..+++....+..-+..
T Consensus 77 l~~q~~~l~~~l~~l~~~~~~ 97 (127)
T smart00502 77 LEQQLESLTQKQEKLSHAINF 97 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555443333
No 286
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=28.35 E-value=5.7e+02 Score=24.97 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=63.0
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy588 224 TDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQV 303 (903)
Q Consensus 224 tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqv 303 (903)
++-.+...+.+|..+.......-..-+..-+.+-+.-.....++++.+...+.-...|...++.++.+.-+.-++...+.
T Consensus 27 ~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~ 106 (132)
T PF10392_consen 27 SELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLT 106 (132)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455556666666666666666666666677777777888888888888888888888888888888777777666666
Q ss_pred Hhhhhhhc
Q psy588 304 TKNKEFES 311 (903)
Q Consensus 304 t~~~~kES 311 (903)
+..+..-.
T Consensus 107 ~~L~rl~~ 114 (132)
T PF10392_consen 107 SQLERLHQ 114 (132)
T ss_pred HHHHHHHH
Confidence 65444443
No 287
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=28.23 E-value=5.4e+02 Score=24.71 Aligned_cols=50 Identities=6% Similarity=0.069 Sum_probs=36.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy588 232 IKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQEL 284 (903)
Q Consensus 232 LlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq 284 (903)
|..+.+++.. .....|..+-+-+.+|.+.+.+.+..|..+..|....++.
T Consensus 30 i~~~l~~R~~---~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~ 79 (140)
T PRK07353 30 VGKVVEERED---YIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAE 79 (140)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544 5567777788888888888888888888888888777644
No 288
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=28.17 E-value=6.4e+02 Score=25.50 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=29.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy588 232 IKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQEL 284 (903)
Q Consensus 232 LlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq 284 (903)
+..+.+++.. .-..+|..+-+-+-+|.+.+++.+..+..++.|.....+.
T Consensus 43 i~~~l~~R~~---~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~ 92 (175)
T PRK14472 43 ILSALEEREK---GIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIRE 92 (175)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 3345555566666666677777777777776666665543
No 289
>KOG0239|consensus
Probab=28.07 E-value=1.2e+03 Score=29.17 Aligned_cols=6 Identities=33% Similarity=0.661 Sum_probs=2.6
Q ss_pred ceeecc
Q psy588 517 NIIDVS 522 (903)
Q Consensus 517 ~~~~~~ 522 (903)
.+|+|.
T Consensus 484 t~~~V~ 489 (670)
T KOG0239|consen 484 TVIKVG 489 (670)
T ss_pred eEEecC
Confidence 344443
No 290
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.02 E-value=3.6e+02 Score=30.26 Aligned_cols=46 Identities=15% Similarity=0.253 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy588 255 AEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQ 300 (903)
Q Consensus 255 QEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~s 300 (903)
++--.+..||...++.+..+..|-.+|.+..+.+...+..+...+-
T Consensus 270 ~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~l 315 (344)
T PF12777_consen 270 EEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSL 315 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHH
Confidence 3334456677778888888888999999999888888888887643
No 291
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=27.98 E-value=6.1e+02 Score=25.18 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy588 246 LKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSN 280 (903)
Q Consensus 246 AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~ 280 (903)
.+.+++.+-+++....+++.++++.+..+...+..
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666677777777777776655444443
No 292
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=27.92 E-value=4.3e+02 Score=23.40 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=22.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHH
Q psy588 267 TERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQ 315 (903)
Q Consensus 267 lERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~ 315 (903)
...-+...+......+...+.++.++......+.+.....+..+.+++.
T Consensus 50 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~ 98 (123)
T PF02050_consen 50 YQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKER 98 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455555555554444444444443333
No 293
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=27.45 E-value=6.4e+02 Score=25.29 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy588 250 MKKMLAEKVEVMQKCQDTERKLV 272 (903)
Q Consensus 250 LrKlLQEKlEA~qKLeElERsL~ 272 (903)
|++++..|-.....|.+++.+|.
T Consensus 22 l~~~~~qk~~le~qL~E~~~al~ 44 (119)
T COG1382 22 LQKVILQKQQLEAQLKEIEKALE 44 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555
No 294
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=27.19 E-value=1.4e+03 Score=29.19 Aligned_cols=78 Identities=31% Similarity=0.370 Sum_probs=50.3
Q ss_pred ccchhhhhhhhccchhhhhccccccCCCchhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhcChhhhHhhhhccccccccc
Q psy588 389 KYFDDVHQILTQFDEYFLRFNESESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKI 468 (903)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (903)
|..|.+-.+..|+.. ++.|..... .+..+++-....++..-.+|-|+..|-.|+.. +|..|.----+|
T Consensus 525 k~rek~~kl~~ql~k--~~~~~e~~~---r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~-------~E~EK~~ke~ki 592 (775)
T PF10174_consen 525 KKREKHEKLEKQLEK--LRANAELRD---RIQQLEQEVTRYREESEKAQAEVERLLDILRE-------AENEKNDKEKKI 592 (775)
T ss_pred HhhhHHHHHHHHHHH--HHhCHhhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHH
Confidence 345555566666654 566654432 45566666677778888889999988888764 344444433468
Q ss_pred cchhhhhHHH
Q psy588 469 GGLELQLEKL 478 (903)
Q Consensus 469 ~~~~~~~~~~ 478 (903)
|-|+-.|++.
T Consensus 593 ~~LekeLek~ 602 (775)
T PF10174_consen 593 GELEKELEKA 602 (775)
T ss_pred HHHHHHHHHh
Confidence 8888777663
No 295
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=27.16 E-value=1.2e+03 Score=28.52 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=23.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHHHHHHH
Q psy588 283 ELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQ 331 (903)
Q Consensus 283 eq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqell~~v~ 331 (903)
...+...++++-|.++.++...+..-+.=--++.+.+++|+.+|-+++.
T Consensus 337 ~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~ 385 (622)
T COG5185 337 SEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELD 385 (622)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433322222122344567777777765543
No 296
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=27.11 E-value=3.8e+02 Score=24.34 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHh
Q psy588 262 QKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQE 322 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qE 322 (903)
+|+..+=+.+.....|=..||++...++.|...+.+|-...-++ .|+|...|-+++|+
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~r---vEamI~RLk~leq~ 64 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQK---VEAMITRLKALEQH 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhccC
Confidence 34444444444444555555666666666666665554433332 45566666666553
No 297
>PRK01156 chromosome segregation protein; Provisional
Probab=26.65 E-value=1.3e+03 Score=28.76 Aligned_cols=8 Identities=13% Similarity=0.123 Sum_probs=3.9
Q ss_pred hhhhhhhc
Q psy588 393 DVHQILTQ 400 (903)
Q Consensus 393 ~~~~~~~~ 400 (903)
++|+.-+.
T Consensus 453 ~~Cp~c~~ 460 (895)
T PRK01156 453 SVCPVCGT 460 (895)
T ss_pred CCCCCCCC
Confidence 45555443
No 298
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=26.31 E-value=8.5e+02 Score=26.29 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=24.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhh--------hchHHHHHhhhHhHHHHH
Q psy588 284 LLDRNRDELEEIIKKYQDQVTKNKEF--------ESTIDQLLNSNQEKSNTL 327 (903)
Q Consensus 284 q~E~Lq~EL~EL~~K~sEqvt~~~~k--------ES~~~~L~~~~qEKqell 327 (903)
.++....++.++..+|...+..++.. .|+...|....+|-++|-
T Consensus 144 kL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELt 195 (207)
T PF05010_consen 144 KLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELT 195 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666644432221 245556666666666664
No 299
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.81 E-value=8.8e+02 Score=26.31 Aligned_cols=128 Identities=15% Similarity=0.215 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChh
Q psy588 159 QLNTCIQEALQRENMLKNKLSKLQHIVIDLK------------KAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDD 226 (903)
Q Consensus 159 QLSqYLqEALqREqmLEqKLaiLQeIL~~Tk------------~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tED 226 (903)
.+..|+++-..-|.-=-.+|..|-.=+.... ...-.+|...+++-+-+++. -..++.++.-
T Consensus 23 d~~~F~r~RaeIE~EYs~~L~kL~k~~~~K~~~~~~~~~~~~~~s~~~~W~~lL~qt~~~a~~------h~~lse~l~~- 95 (241)
T cd07656 23 DLQDYFRRRAEIELEYSRSLEKLADRFSSKHKNEKSKREDWSLLSPVNCWNTLLVQTKQESRD------HSTLSDIYSN- 95 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHh-
Confidence 4566666544444444444444433221111 11345777666664444433 2222221111
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHH
Q psy588 227 KLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELE 293 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~ 293 (903)
.+=..|..|.+++..--.+..+..+++.+|.....+.|...-+.+.....|+..-++.+..+...+.
T Consensus 96 ~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~ 162 (241)
T cd07656 96 NLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQEE 162 (241)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112466777777777777778888888888877777777777777666666666666655555543
No 300
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=25.42 E-value=4.8e+02 Score=29.71 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----hhhhhchHHHHHhhhHhHHHHHHHHH
Q psy588 260 VMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK----NKEFESTIDQLLNSNQEKSNTLEKLQ 331 (903)
Q Consensus 260 A~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~----~~~kES~~~~L~~~~qEKqell~~v~ 331 (903)
|++|++++|.-|..+..|-..=+=+++.+...|+....|..+.-+. -++..++.+...+++.-+++|.-.++
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHh
Confidence 3344455555554444444444444555555555555544442222 11222344444455555555544433
No 301
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=25.39 E-value=6.7e+02 Score=24.80 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=43.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy588 230 DEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKN 306 (903)
Q Consensus 230 keLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~ 306 (903)
|.|++++=+-++....-.--.=-+=.+=+.+++++-++|.-...+...++.++.....++..-.++...|....+..
T Consensus 10 KeLVDLQIe~~rL~Eq~EaE~FELk~~vL~lE~rvleLel~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~ 86 (108)
T PF14739_consen 10 KELVDLQIETNRLREQHEAEKFELKNEVLRLENRVLELELHGDKAAPQIADLRHRLAEAQEDRQELQEEYVSLKKNY 86 (108)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666664433322222111111222234566666677766666677777777777777777777777776655543
No 302
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=25.38 E-value=1.5e+03 Score=28.89 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=10.6
Q ss_pred HHHHHHHHhHHHHHHhcChhhhHhh
Q psy588 433 LHTAQEEYTSLQEIVNRNEEQLAFL 457 (903)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (903)
++.+.....+|++.+-+-.+.-+.|
T Consensus 333 ~~qL~~qVAsLQeev~sq~qEqaiL 357 (739)
T PF07111_consen 333 VKQLRGQVASLQEEVASQQQEQAIL 357 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433333
No 303
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=25.24 E-value=2.8e+02 Score=32.00 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=10.7
Q ss_pred ccccceEEEEECCEEEEE
Q psy588 56 LSRNHALIWYYNGKFYLQ 73 (903)
Q Consensus 56 VSR~HAeI~~edG~~yIr 73 (903)
+|...-.+.+.++.+.|.
T Consensus 162 ~A~~~G~~~~~~~~i~V~ 179 (451)
T PF03961_consen 162 YAAIDGRPVFENGKISVD 179 (451)
T ss_pred EEecCCEEEEECCEEEEE
Confidence 466666666666655543
No 304
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=24.95 E-value=1.2e+03 Score=27.69 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q psy588 248 EVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEII 296 (903)
Q Consensus 248 ESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~ 296 (903)
+..++.|+++..|+..+....+...........++...+..+.++.+-.
T Consensus 193 e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 193 EIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455555555555555554444444444444444444444445554444
No 305
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.56 E-value=3.5e+02 Score=28.24 Aligned_cols=12 Identities=33% Similarity=0.756 Sum_probs=7.8
Q ss_pred cccccccccccc
Q psy588 372 IKNELGLETKVD 383 (903)
Q Consensus 372 ~~~~~~~~~~~~ 383 (903)
|+.+||+...||
T Consensus 176 i~k~f~Ip~d~d 187 (188)
T PF03962_consen 176 IRKEFGIPEDFD 187 (188)
T ss_pred HHHHcCCccccC
Confidence 446777776665
No 306
>PRK13410 molecular chaperone DnaK; Provisional
Probab=24.46 E-value=5.4e+02 Score=31.69 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy588 255 AEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKY 299 (903)
Q Consensus 255 QEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~ 299 (903)
++|-.....+.+++..|.. +.-..+++.+..+++++..+....
T Consensus 559 ~~~~~~~~~l~~~~~wL~~--~~~~~~~~~~~~~~~~l~~~~~~~ 601 (668)
T PRK13410 559 RQRRAVESAMRDVQDSLEQ--DDDRELDLAVADLQEALYGLNREV 601 (668)
T ss_pred HHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666653 233456666666666666666543
No 307
>KOG4673|consensus
Probab=24.28 E-value=1.6e+03 Score=28.84 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=30.2
Q ss_pred hHhhhcccchhHHhHHHhhccccccchhhHHHhhhhhHhhhhccchhhHHHhhh
Q psy588 620 YKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVIKDYQNVLPSIVESM 673 (903)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (903)
..+|.+|||.|.+.|++|.+ +|++++--..|.+.-.-.+++-|
T Consensus 885 laeElvklT~e~e~l~ek~~-----------~~p~~~~~ledL~qRy~a~Lqmy 927 (961)
T KOG4673|consen 885 LAEELVKLTAECEKLREKAD-----------RVPGIKAELEDLRQRYAAALQMY 927 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 45889999999999999864 46666665555555555555544
No 308
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.23 E-value=6.8e+02 Score=26.21 Aligned_cols=27 Identities=15% Similarity=0.412 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy588 255 AEKVEVMQKCQDTERKLVNIENECSNL 281 (903)
Q Consensus 255 QEKlEA~qKLeElERsL~~sE~EC~~L 281 (903)
.|+...+.++++++..+.....|+..+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444444433
No 309
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.14 E-value=5.9e+02 Score=29.99 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhhhHHHH
Q psy588 227 KLRDEIKLLHRDKSTYE 243 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE 243 (903)
.++++|.+++.+....+
T Consensus 75 ~l~~~l~~l~~~~~~~~ 91 (525)
T TIGR02231 75 ELRKQIRELEAELRDLE 91 (525)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555443
No 310
>KOG0962|consensus
Probab=24.08 E-value=1.9e+03 Score=29.75 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=34.3
Q ss_pred hchhhhHhhHHHHHHHHHHHHhc--------cCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 199 LIQEDRLLSRVEFLESQLAAYSK--------SFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTE 268 (903)
Q Consensus 199 LIdEDrLLSRIE~LEnQLq~~sK--------N~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElE 268 (903)
.-.+++++-.++..+.++..... -.+.++++.+...+++. ..+..+--|.+++.-++.....+++..+-
T Consensus 787 ~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~-~~~~rke~E~~~k~~~~~~~~i~~l~~~~ 863 (1294)
T KOG0962|consen 787 VTVLERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQES-LDKLRKEIECLQKEVIEQEREISRLINLR 863 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666655555555544322 34455566665555432 23344444555555555555544444433
No 311
>PLN02939 transferase, transferring glycosyl groups
Probab=24.07 E-value=1.5e+03 Score=29.83 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=13.8
Q ss_pred hhhhHhhHHHHHHHHHHHHh
Q psy588 201 QEDRLLSRVEFLESQLAAYS 220 (903)
Q Consensus 201 dEDrLLSRIE~LEnQLq~~s 220 (903)
.-|-+-.|++.|+..|....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~ 313 (977)
T PLN02939 294 QYDCWWEKVENLQDLLDRAT 313 (977)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33567788888887777654
No 312
>PRK13411 molecular chaperone DnaK; Provisional
Probab=23.81 E-value=4.8e+02 Score=31.85 Aligned_cols=8 Identities=13% Similarity=-0.251 Sum_probs=2.9
Q ss_pred hHhHHHHH
Q psy588 320 NQEKSNTL 327 (903)
Q Consensus 320 ~qEKqell 327 (903)
++.-..+.
T Consensus 589 ~~~~~~i~ 596 (653)
T PRK13411 589 QQALLAIG 596 (653)
T ss_pred HHHHHHHH
Confidence 33333333
No 313
>KOG4001|consensus
Probab=23.76 E-value=1e+03 Score=26.33 Aligned_cols=89 Identities=21% Similarity=0.233 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhHhhH--HHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---H
Q psy588 182 QHIVIDLKKAADVSWKALIQEDRLLSR--VEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLA---E 256 (903)
Q Consensus 182 QeIL~~Tk~AAE~sWqaLIdEDrLLSR--IE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQ---E 256 (903)
+++.+.-+.-...+| |.|++. +.+.|..|-.| ..-|++|-.+..- -.-|+...-=++||+|+ |
T Consensus 119 ~GicP~rreLYsQcF------DElIRqvs~scveRGlll~---rvRDEIrMt~aAY---qtlyeSsvAfGmRKALqae~e 186 (259)
T KOG4001|consen 119 FGICPIRRELYSQCF------DELIRQVSVSCVERGLLLV---RVRDEIRMTFAAY---QTLYESSVAFGMRKALQAENE 186 (259)
T ss_pred CCcCCCcHHHHHHHH------HHHHHHcchhHHhcceeEE---EehHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh
Confidence 445554444455556 666665 44455555444 2456666555443 34677777777888775 4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy588 257 KVEVMQKCQDTERKLVNIENECSNLQ 282 (903)
Q Consensus 257 KlEA~qKLeElERsL~~sE~EC~~LK 282 (903)
|-.+..+...+|-....++...+.++
T Consensus 187 k~~~~~~~k~le~~k~~Le~~ia~~k 212 (259)
T KOG4001|consen 187 KTRATTEWKVLEDKKKELELKIAQLK 212 (259)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55555555555544444444444444
No 314
>KOG1899|consensus
Probab=23.54 E-value=1.1e+03 Score=29.91 Aligned_cols=15 Identities=47% Similarity=0.448 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy588 164 IQEALQRENMLKNKL 178 (903)
Q Consensus 164 LqEALqREqmLEqKL 178 (903)
++|-++|=.+-+.-|
T Consensus 109 yQerLaRLe~dkesL 123 (861)
T KOG1899|consen 109 YQERLARLEMDKESL 123 (861)
T ss_pred HHHHHHHHhcchhhh
Confidence 356666655544443
No 315
>KOG4460|consensus
Probab=23.53 E-value=1.5e+03 Score=28.31 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q psy588 237 RDKSTYENQLKEVMKKML-AEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFE 310 (903)
Q Consensus 237 eEK~~YE~~AKESLrKlL-QEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kE 310 (903)
++--.|+-..++.+++-. +=+..-.+++++ ++..++|...+++..+.|....+++..++...+..|+.+-
T Consensus 573 EqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~----l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~ 643 (741)
T KOG4460|consen 573 EQYILKQDLVKEEIQRHVKLLCDQKKKQLQD----LSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLL 643 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344445556677776532 222223344443 4455678888999999999999999999999999888773
No 316
>PRK09343 prefoldin subunit beta; Provisional
Probab=23.44 E-value=7e+02 Score=24.33 Aligned_cols=90 Identities=20% Similarity=0.271 Sum_probs=57.0
Q ss_pred hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAE-KVEVMQKCQDTERKLVNIENECSNL 281 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQE-KlEA~qKLeElERsL~~sE~EC~~L 281 (903)
..+......||.++.-+. ...++|-.|.++-.-|...-.--++.=..| +-+...|++.++..+...+..-..+
T Consensus 24 ~~~~~q~~~le~q~~e~~------~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l 97 (121)
T PRK09343 24 ERLLQQKSQIDLELREIN------KALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKL 97 (121)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888763 456788888888888888776655543322 2333455555556666666666666
Q ss_pred HHHHHHhHHHHHHHHHH
Q psy588 282 QELLDRNRDELEEIIKK 298 (903)
Q Consensus 282 Keq~E~Lq~EL~EL~~K 298 (903)
++.+..++..++++...
T Consensus 98 ~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 98 REKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66666666666666554
No 317
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=23.36 E-value=7.4e+02 Score=24.56 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=71.0
Q ss_pred HHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 193 DVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLV 272 (903)
Q Consensus 193 E~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~ 272 (903)
+..|..++.+|- .-++-=|+.+ +-+..+....+.++.+.+...+...++.+..-++.=..+..-...+-..+.
T Consensus 10 ~~~W~~~~~~~~-----~pv~~al~~l--d~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~ 82 (142)
T PF04048_consen 10 KDEWPFMLTDDF-----NPVELALSLL--DDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSIS 82 (142)
T ss_pred HHHHHHHhcCCC-----cHHHHHHHhc--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556765554432 2233334433 224446778889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHH
Q psy588 273 NIENECSNLQELLDRNRDELEE 294 (903)
Q Consensus 273 ~sE~EC~~LKeq~E~Lq~EL~E 294 (903)
.+...+..+|+.+...+..|.-
T Consensus 83 ~sq~~i~~lK~~L~~ak~~L~~ 104 (142)
T PF04048_consen 83 ESQERIRELKESLQEAKSLLGC 104 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999877777766643
No 318
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.34 E-value=1.5e+03 Score=28.10 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=8.8
Q ss_pred hHhhHHHHHHHHHHHH
Q psy588 204 RLLSRVEFLESQLAAY 219 (903)
Q Consensus 204 rLLSRIE~LEnQLq~~ 219 (903)
.++.++..|+.|+...
T Consensus 308 ~~l~~~~~l~~ql~~l 323 (726)
T PRK09841 308 AVLEQIVNVDNQLNEL 323 (726)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555666665553
No 319
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=23.28 E-value=9.5e+02 Score=28.75 Aligned_cols=114 Identities=17% Similarity=0.249 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----hhc--hhhhHhhHHHHHHHHHHHHhccC-----------------ChhHH
Q psy588 172 NMLKNKLSKLQHIVIDLKKAADVSWK----ALI--QEDRLLSRVEFLESQLAAYSKSF-----------------TDDKL 228 (903)
Q Consensus 172 qmLEqKLaiLQeIL~~Tk~AAE~sWq----aLI--dEDrLLSRIE~LEnQLq~~sKN~-----------------tEDkl 228 (903)
..+..|+..++.+=......+.+.+- ..+ +=|+|+.|++-|--....+.|.. --+..
T Consensus 183 ~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a 262 (426)
T smart00806 183 KDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETA 262 (426)
T ss_pred HHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 66777777777752222222344332 222 22888888877766555543311 12345
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy588 229 RDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKY 299 (903)
Q Consensus 229 RkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~ 299 (903)
+++|.+|++.-..---.||-.|++-|+.=|+-.+-| .+|..| ..+|+.+|..+.+-|
T Consensus 263 ~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL-~lQedL-------------~~DL~dDL~ka~eTf 319 (426)
T smart00806 263 RKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFL-TLQEDL-------------IADLKEDLEKAEETF 319 (426)
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHH-HHHHHH-------------HHHHHHHHHHHHHHH
Confidence 566777765555444455555555555333333322 233333 345556666555544
No 320
>KOG2607|consensus
Probab=23.17 E-value=1.4e+03 Score=27.71 Aligned_cols=31 Identities=16% Similarity=-0.025 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 153 PLEELYQLNTCIQEALQRENMLKNKLSKLQH 183 (903)
Q Consensus 153 pLKELyQLSqYLqEALqREqmLEqKLaiLQe 183 (903)
-+++|++|..++..-......++.-...+++
T Consensus 355 fldel~ELl~fl~mR~~el~eee~~~~i~~~ 385 (505)
T KOG2607|consen 355 FLDELTELLGFLGMRSYELLEEEYRNKILDD 385 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999988888776666666666666763
No 321
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.17 E-value=3.1e+02 Score=34.87 Aligned_cols=85 Identities=28% Similarity=0.345 Sum_probs=53.0
Q ss_pred ccccccceeeccccc---------hhhhhcccccccccccccccccccc-----chhhhhhhhcc-------chhhhhcc
Q psy588 351 MHDKLKNYYMNFHII---------KEKMTNIKNELGLETKVDQNILVKY-----FDDVHQILTQF-------DEYFLRFN 409 (903)
Q Consensus 351 ~~~~~~~~~~~~~~~---------~~k~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-------~~~~~~~~ 409 (903)
+||++|.+-=.-|.| +.|-+--+.+-|+++ |||- |.+-.+.++|- |||-+..-
T Consensus 335 ~~~~vk~~~G~~~~~LsA~~E~~~~~r~~~~~~~~~~~a------Lv~~l~~aAP~~A~~~L~~~~~~~~~~dE~~AA~E 408 (1104)
T COG4913 335 AHDNVKQIVGAQHGILSAKREGAVDKRRTISTARAGLDA------LVKGLGGAAPESAEELLELNNAARLTVDEYPAARE 408 (1104)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHhccCCCcccHHHHHHHHHHHHHhHhhhHHHHH
Confidence 778777653222655 334444455666655 5554 77888888875 44444333
Q ss_pred ccccCCCchhHhHHHHHHHHHHHHHHHHHHHhHHHH
Q psy588 410 ESESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQE 445 (903)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (903)
.-++.|-..+|+. -+.++..+++-.|++||++
T Consensus 409 ~L~~~~~~~~~~~----~~A~d~~~a~~~El~SL~k 440 (1104)
T COG4913 409 ALESAGQRNVEDR----TRAVDEFKAADQELSSLSK 440 (1104)
T ss_pred HHHhccccchHHH----HHHHHHHHHHHHHHHHHhc
Confidence 3455666555553 4566778889999999986
No 322
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=22.87 E-value=1.4e+03 Score=27.65 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=29.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHh-hhhhhchHHHHHhhhHhHHHHHHHHHHHHHhhhccccc-ccccccc
Q psy588 282 QELLDRNRDELEEIIKKYQDQVTK-NKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDA-FTLKDNL 350 (903)
Q Consensus 282 Keq~E~Lq~EL~EL~~K~sEqvt~-~~~kES~~~~L~~~~qEKqell~~v~~~~~~~~~~~~~-~~~~~~~ 350 (903)
...+..+++.+.....+..+-.+. .+...+++.++..+.+ +-.++.-++.+=-+-++. -...-+|
T Consensus 139 ~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~----~n~~i~~ea~nLt~ALkgd~K~rG~W 205 (475)
T PRK10361 139 NSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQ----LNAQMAQEAINLTRALKGDNKTQGNW 205 (475)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCCcCcch
Confidence 344555555555444444432222 2223346666655543 333444444443333433 3456778
No 323
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.75 E-value=6.4e+02 Score=23.65 Aligned_cols=15 Identities=40% Similarity=0.632 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhhhHH
Q psy588 227 KLRDEIKLLHRDKST 241 (903)
Q Consensus 227 klRkeLlqLqeEK~~ 241 (903)
.+..++..|..++..
T Consensus 36 ~~e~ei~~l~~dr~r 50 (89)
T PF13747_consen 36 ELEEEIQRLDADRSR 50 (89)
T ss_pred hHHHHHHHHHhhHHH
Confidence 333444444444433
No 324
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=22.66 E-value=7.8e+02 Score=24.57 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy588 245 QLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQE 283 (903)
Q Consensus 245 ~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKe 283 (903)
.-...+..+-+-+-+|...+++.++.|..+..|.....+
T Consensus 57 ~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~ 95 (156)
T CHL00118 57 YIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEIT 95 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666677777777777777777777666553
No 325
>KOG4568|consensus
Probab=22.63 E-value=1.6e+03 Score=28.26 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=53.9
Q ss_pred hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLH-RDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNL 281 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLq-eEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~L 281 (903)
|..++-+.++..++-.+.+ ...+.++++...++ .....|+.--.......---+.++...-+.+.+.-.+.+.+..+|
T Consensus 523 ~~~~e~~~~~~~~~~~~e~-~~~~eik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 601 (664)
T KOG4568|consen 523 DDSLELLKALYESLESLEA-MEDKEIKKEEEKVQLNRQSEYENNDNKLREELAIHFKEAAALREKLKEASENKENEVQFQ 601 (664)
T ss_pred chhHHHHHHHHHhcccHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 6666666666666666543 23334444444443 223333332222222222222333344445556666677777888
Q ss_pred HHHHHH----hHHHHHHHHHHHHHHHHhhhhhh
Q psy588 282 QELLDR----NRDELEEIIKKYQDQVTKNKEFE 310 (903)
Q Consensus 282 Keq~E~----Lq~EL~EL~~K~sEqvt~~~~kE 310 (903)
+..... -+.++..+..++.+..-++++++
T Consensus 602 ~~~~~~~~~~~~~e~~~~~~~~~eae~~~~e~~ 634 (664)
T KOG4568|consen 602 RAELTLENIRHQLELECQQTKDSEAELRLKELE 634 (664)
T ss_pred HHHHHHHhhhhhhhhHHHHHhhhHhhhhHHHHH
Confidence 775332 34455566666666555555555
No 326
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=22.61 E-value=1.5e+03 Score=27.92 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=6.4
Q ss_pred cccccccccCcce
Q psy588 489 NEKFGKAYNCDTL 501 (903)
Q Consensus 489 ~~~~~~~~~~~~~ 501 (903)
|.+|...-+|+.+
T Consensus 378 ~~~~~~~ss~~~~ 390 (538)
T PF05781_consen 378 NDRFNRRSSSWRE 390 (538)
T ss_pred chhhcCCCCcccc
Confidence 3455555555543
No 327
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=22.57 E-value=1.1e+02 Score=28.20 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=29.3
Q ss_pred EEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEEEcCceeee
Q psy588 70 FYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDVIET 115 (903)
Q Consensus 70 ~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrLG~tVLr~ 115 (903)
|||.| +..+|||..-.+.+ ..|++||+|.|++..+..
T Consensus 32 ~~i~e----g~V~vNGe~EtRRg-----kKlr~gd~V~i~~~~~~v 68 (73)
T COG2501 32 AFIAE----GEVKVNGEVETRRG-----KKLRDGDVVEIPGQRYQV 68 (73)
T ss_pred HHHHC----CeEEECCeeeeccC-----CEeecCCEEEECCEEEEE
Confidence 66655 58999998877743 689999999999876654
No 328
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=22.42 E-value=6.5e+02 Score=23.60 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q psy588 246 LKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIK 297 (903)
Q Consensus 246 AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~ 297 (903)
..+-+.|+..||..|-++.-.+.|+......|...|+.+++.-..-..+|..
T Consensus 29 lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 29 LEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445667888888899999999999999999999998887776665555555
No 329
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.24 E-value=2.9e+02 Score=23.70 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q psy588 263 KCQDTERKLVNIENECSNLQELLDRNRDELEEIIK 297 (903)
Q Consensus 263 KLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~ 297 (903)
.+++||..+...+.+...|+..+..++.++..|..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666666666666666666666666655544
No 330
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=22.20 E-value=1e+03 Score=25.82 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHh
Q psy588 428 DLREQLHTAQEEYTSLQEIVN 448 (903)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~ 448 (903)
+..+.++....|+..|+.+..
T Consensus 222 d~~e~~~~~~~EL~rLq~~~~ 242 (256)
T PF14932_consen 222 DEEEVLEERRSELARLQSAYI 242 (256)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666665443
No 331
>KOG4572|consensus
Probab=21.99 E-value=1.9e+03 Score=28.85 Aligned_cols=65 Identities=20% Similarity=0.177 Sum_probs=35.7
Q ss_pred HHHHhHHHHHHHHHHHHH------HHHhhhhh-----------hchHHHHHhhhHhHHHHHHHHHHHHHh----hhcccc
Q psy588 284 LLDRNRDELEEIIKKYQD------QVTKNKEF-----------ESTIDQLLNSNQEKSNTLEKLQYETLQ----AQKQLD 342 (903)
Q Consensus 284 q~E~Lq~EL~EL~~K~sE------qvt~~~~k-----------ES~~~~L~~~~qEKqell~~v~~~~~~----~~~~~~ 342 (903)
.++.+-.++.++..++.+ ++...+++ |+.+.++++...|+|++.+ +|-|.. ...+++
T Consensus 969 eLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~ea--eIiQekE~el~e~efk 1046 (1424)
T KOG4572|consen 969 ELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEA--EIIQEKEGELIEDEFK 1046 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH--HHHhcccchHHHHHhh
Confidence 455555566666666544 11112222 3466677888888888854 444443 334455
Q ss_pred cccccccc
Q psy588 343 AFTLKDNL 350 (903)
Q Consensus 343 ~~~~~~~~ 350 (903)
++..+|-+
T Consensus 1047 a~d~Sd~r 1054 (1424)
T KOG4572|consen 1047 ALDESDPR 1054 (1424)
T ss_pred hccccCcc
Confidence 55555554
No 332
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=21.59 E-value=1.1e+03 Score=25.89 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=20.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 268 ERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 268 ERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
+.....++.++..+++.....+..++.....|.+.+.+
T Consensus 210 ~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~ 247 (297)
T PF02841_consen 210 QAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQ 247 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666665555555555555555555554
No 333
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=21.24 E-value=1.5e+03 Score=27.70 Aligned_cols=87 Identities=22% Similarity=0.298 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHH--H
Q psy588 171 ENMLKNKLSKLQHIVIDLKKAADVSWKALI-QEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQL--K 247 (903)
Q Consensus 171 EqmLEqKLaiLQeIL~~Tk~AAE~sWqaLI-dEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~A--K 247 (903)
+..|...|..|+.-.......++..|..+. .-|..+..++.||..|..|.. .-..+++.|..++.+-...|-.. +
T Consensus 7 ~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~--~L~~~~~di~~IE~qn~~Lqvq~~N~ 84 (701)
T PF09763_consen 7 EERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDV--ELNSVRDDIEYIESQNNGLQVQSANQ 84 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcCchhhHHHHH
Confidence 445666777777766666677788886544 459999999999999999976 44567777777776555443332 3
Q ss_pred HHHHHHHHHHHH
Q psy588 248 EVMKKMLAEKVE 259 (903)
Q Consensus 248 ESLrKlLQEKlE 259 (903)
..|.+-|++=+.
T Consensus 85 k~L~~eL~~Ll~ 96 (701)
T PF09763_consen 85 KLLLNELENLLD 96 (701)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 334
>PLN02939 transferase, transferring glycosyl groups
Probab=21.18 E-value=2e+03 Score=28.79 Aligned_cols=177 Identities=17% Similarity=0.249 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHH---hhhhhhc---
Q psy588 248 EVMKKMLAEKVEVMQKCQDTERKLVNIE----------NECSNLQELLDRNRDELEEIIKKYQDQVT---KNKEFES--- 311 (903)
Q Consensus 248 ESLrKlLQEKlEA~qKLeElERsL~~sE----------~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt---~~~~kES--- 311 (903)
|.+.++-.|+.-...-+.++|..+..+. .|| |-+..+.||.=|..++.+...... +.+.+..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (977)
T PLN02939 257 ERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDC--WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVD 334 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4445555555555555556665554433 244 555666666555555544333111 1222221
Q ss_pred -hHHHHHhhhHhHHHHHHHHHHHHHhhhccccccccccccccccccceeecc-ccchhhhhccccccc---ccccccccc
Q psy588 312 -TIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHDKLKNYYMNF-HIIKEKMTNIKNELG---LETKVDQNI 386 (903)
Q Consensus 312 -~~~~L~~~~qEKqell~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~~~---~~~~~~~~~ 386 (903)
+..-|...+..|--.. .++..|++-...-.+|.-.+.-||.-.. .|+.- ...-+++.++++|-| ++..+|
T Consensus 335 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 409 (977)
T PLN02939 335 KLEASLKEANVSKFSSY-KVELLQQKLKLLEERLQASDHEIHSYIQ-LYQESIKEFQDTLSKLKEESKKRSLEHPAD--- 409 (977)
T ss_pred HHHHHHHHhhHhhhhHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhcccccCchh---
Confidence 2222222222222221 3333444433333444444444544332 33333 333566666666654 455554
Q ss_pred ccccchhhh-hhhhccchhhhhccccccCCCchhHhHHHHHHHHHHHHHHHHHHH
Q psy588 387 LVKYFDDVH-QILTQFDEYFLRFNESESSGLNSIEDIEKVTKDLREQLHTAQEEY 440 (903)
Q Consensus 387 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (903)
+.|-+|+ .|+-..|.+.+ +|+-|.++--.+|+-.-.--..+.+-|
T Consensus 410 --~~~~~~~~~lll~id~~~~-------~~~~~~~~a~~lr~~~~~~~~~~~~~~ 455 (977)
T PLN02939 410 --DMPSEFWSRILLLIDGWLL-------EKKISNNDAKLLREMVWKRDGRIREAY 455 (977)
T ss_pred --hCCHHHHHHHHHHHHHHHH-------hccCChhhHHHHHHHHHhhhhhHHHHH
Confidence 4566666 46666666655 466666666665543333333333333
No 335
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.17 E-value=1.8e+03 Score=28.15 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=14.8
Q ss_pred hhchhhhHhhHHHHHHHHHHHHhc
Q psy588 198 ALIQEDRLLSRVEFLESQLAAYSK 221 (903)
Q Consensus 198 aLIdEDrLLSRIE~LEnQLq~~sK 221 (903)
.....+.+-.+++.+++.+.-+..
T Consensus 524 ~~~~~~~~~~~~e~l~~~~e~~~~ 547 (908)
T COG0419 524 EEALKEELEEKLEKLENLLEELEE 547 (908)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHh
Confidence 344456666777777777666544
No 336
>PRK11519 tyrosine kinase; Provisional
Probab=21.11 E-value=9e+02 Score=29.86 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=7.2
Q ss_pred CCCCCccceeeccc
Q psy588 510 APNQKDVNIIDVSN 523 (903)
Q Consensus 510 ~~~~~~~~~~~~~~ 523 (903)
|-..+.|-+||..-
T Consensus 552 a~~g~rvLlID~Dl 565 (719)
T PRK11519 552 SQTNKRVLLIDCDM 565 (719)
T ss_pred HhCCCcEEEEeCCC
Confidence 34445566666543
No 337
>KOG0577|consensus
Probab=21.10 E-value=1.8e+03 Score=28.29 Aligned_cols=84 Identities=18% Similarity=0.263 Sum_probs=37.4
Q ss_pred HHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHH-HhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 194 VSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKL-LHRDKSTYEN---QLKEVMKKMLAEKVEVMQKCQDTER 269 (903)
Q Consensus 194 ~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlq-LqeEK~~YE~---~AKESLrKlLQEKlEA~qKLeElER 269 (903)
.-|+..+.-..-......+|+|...| ++.++.+|++|.. ..-=|..|+. .-|+-|+.. +.+-+..+ ++|
T Consensus 559 kKfqq~i~~qqkk~l~~~~e~qkkeY--K~~KE~~KeeL~e~~stPkrek~e~l~~qKe~Lq~~---qaeeEa~l--l~~ 631 (948)
T KOG0577|consen 559 KKFQQHILGQQKKELKAYLEAQKKEY--KLNKEQLKEELQENPSTPKREKAEWLLRQKENLQQC---QAEEEAGL--LRR 631 (948)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH--HhhHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH---HHHHHhhH--HHH
Confidence 33333333333333444566666665 2566666666652 2222333332 233333322 22222222 333
Q ss_pred HHHhhHHHHHHHHHH
Q psy588 270 KLVNIENECSNLQEL 284 (903)
Q Consensus 270 sL~~sE~EC~~LKeq 284 (903)
...-.|.||-..|+.
T Consensus 632 qrqy~ele~r~ykRk 646 (948)
T KOG0577|consen 632 QRQYLELECRRYKRK 646 (948)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344457777777654
No 338
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=21.09 E-value=1e+02 Score=26.08 Aligned_cols=29 Identities=34% Similarity=0.724 Sum_probs=19.2
Q ss_pred ccCch-hhHHHHHHHHHHHhhhhhhHHhhhhhhc
Q psy588 865 ELSPL-SLLGIIIMFLVILTPIMYSFENILSHIT 897 (903)
Q Consensus 865 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (903)
.+||. +..|+..+|+.+|+|--| ||+|+-
T Consensus 9 ~~s~~e~aigltv~f~~~L~PagW----VLshL~ 38 (44)
T PF02285_consen 9 PLSPAEQAIGLTVCFVTFLGPAGW----VLSHLE 38 (44)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH----HHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhHHH----HHHHHH
Confidence 34443 457888999999999765 566663
No 339
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.03 E-value=1.9e+03 Score=28.52 Aligned_cols=117 Identities=17% Similarity=0.210 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHH
Q psy588 156 ELYQLNTCIQEALQRENMLKNKLSKLQH-------IVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKL 228 (903)
Q Consensus 156 ELyQLSqYLqEALqREqmLEqKLaiLQe-------IL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDkl 228 (903)
.+--|+.-.+-.+.+++++-.|+..-|+ =..+.......+| +.||=-.+-+.|+-|-..|..+. .|+..+
T Consensus 617 Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~f-a~ID~~Sa~rqIael~~~lE~L~--~t~~~~ 693 (1104)
T COG4913 617 KVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNF-ASIDLPSAQRQIAELQARLERLT--HTQSDI 693 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcch-hhcchhhHHHHHHHHHHHHHHhc--CChhHH
Confidence 3444555556666667666666554433 3333333334455 34444445555544444444432 122221
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q psy588 229 RDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIK 297 (903)
Q Consensus 229 RkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~ 297 (903)
++. +-...| |+.+...+||.++..-.||..+|.++...+..|..+..
T Consensus 694 --~~~-------~~~l~a-------------aQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~s 740 (1104)
T COG4913 694 --AIA-------KAALDA-------------AQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHS 740 (1104)
T ss_pred --HHH-------HHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 111223 33444456677777777888888888877777776654
No 340
>KOG0612|consensus
Probab=21.00 E-value=2.2e+03 Score=29.24 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=20.4
Q ss_pred hhhhHHHHHHhhccCCCchhhhHHHh
Q psy588 683 SEQSIEEEITQQSLNPLSSELDETIH 708 (903)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (903)
.+.+|..-..++-+.++.+++++.=+
T Consensus 1050 t~~~i~~~~~~~~id~~~~~I~~l~~ 1075 (1317)
T KOG0612|consen 1050 TEESIRKILLQMIIDSKASEIEELRS 1075 (1317)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 45667777888888999999887665
No 341
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=20.96 E-value=1.1e+03 Score=25.66 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=25.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy588 232 IKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQ 282 (903)
Q Consensus 232 LlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LK 282 (903)
+..+.+++.. .....|+.+-+-|-+|.+.+.+.+..+..++.|...+.
T Consensus 30 i~~~l~eR~~---~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii 77 (250)
T PRK14474 30 IIQVMKKRQQ---RIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFM 77 (250)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 33444555555555566666666666666665555443
No 342
>PRK05560 DNA gyrase subunit A; Validated
Probab=20.87 E-value=1.8e+03 Score=28.12 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=8.2
Q ss_pred HHHhHHHHHHHHHHHH
Q psy588 285 LDRNRDELEEIIKKYQ 300 (903)
Q Consensus 285 ~E~Lq~EL~EL~~K~s 300 (903)
.+-+..||.++..+|-
T Consensus 460 ~~~i~~EL~~ikkkfg 475 (805)
T PRK05560 460 LEIIKEELLEIKEKFG 475 (805)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3344455555555554
No 343
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=20.86 E-value=6.9e+02 Score=23.28 Aligned_cols=43 Identities=9% Similarity=0.265 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 263 KCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 263 KLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
.-.+.|..+..--+|+..||...-.+......+..+|.+.+++
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~r 68 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIAR 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888899999999999999999999999998886
No 344
>PRK14155 heat shock protein GrpE; Provisional
Probab=20.83 E-value=1.1e+03 Score=25.51 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=33.1
Q ss_pred hhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q psy588 202 EDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKV-EVMQKCQDTERKLVNI 274 (903)
Q Consensus 202 EDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKl-EA~qKLeElERsL~~s 274 (903)
.+.|..+++.|+.++.-+ ++.+.....++++.|..++.-.+++.....+.=+ +.+--+-+++|+|...
T Consensus 15 ~~~l~~~l~~le~e~~el-----kd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~ 83 (208)
T PRK14155 15 ADDAAQEIEALKAEVAAL-----KDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAAS 83 (208)
T ss_pred ccchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcc
Confidence 356666777777777764 2444444555555554444333332222222111 1122344667777653
No 345
>KOG2264|consensus
Probab=20.83 E-value=4e+02 Score=33.05 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHH
Q psy588 261 MQKCQDTERKLVNIENECSNLQELLDRNRDELEE 294 (903)
Q Consensus 261 ~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~E 294 (903)
.+|.++++|.+.+.+.|..+||-..+..|-+++|
T Consensus 113 n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 113 NTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 3556666666666666666666444444433333
No 346
>KOG2911|consensus
Probab=20.78 E-value=1.5e+03 Score=27.25 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=47.5
Q ss_pred hchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy588 199 LIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENE 277 (903)
Q Consensus 199 LIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~E 277 (903)
+.....|..+++.||..+..| .+++|..+.....+...==..|+--+.|-++-|..+..+++.+=-...+++..
T Consensus 239 ~~~~~~L~kqie~L~qeie~~-----~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~n 312 (439)
T KOG2911|consen 239 IQARAKLAKQIEFLEQEIEKS-----KEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTN 312 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344567788888888888775 34666555555555544445566666677777777777777665555555544
No 347
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=20.47 E-value=1.8e+03 Score=28.06 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=9.6
Q ss_pred HHHHHhHHHHHHHHHHHH
Q psy588 283 ELLDRNRDELEEIIKKYQ 300 (903)
Q Consensus 283 eq~E~Lq~EL~EL~~K~s 300 (903)
++.+-+..||.++.++|-
T Consensus 455 ~l~~vi~~EL~eikkkfg 472 (800)
T TIGR01063 455 RVLEIIREELEEIKEQFG 472 (800)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 334445555666665554
No 348
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=20.46 E-value=1e+02 Score=32.15 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=7.4
Q ss_pred HhhhhhhchHHHHHhhhHhHHHHHHH
Q psy588 304 TKNKEFESTIDQLLNSNQEKSNTLEK 329 (903)
Q Consensus 304 t~~~~kES~~~~L~~~~qEKqell~~ 329 (903)
..++++|.|++..++++-|-.||-.+
T Consensus 21 ~ELdEKE~L~~~~QRLkDE~RDLKqE 46 (166)
T PF04880_consen 21 SELDEKENLREEVQRLKDELRDLKQE 46 (166)
T ss_dssp HHHHHHHHHHHCH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355666666666666666666333
No 349
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=20.40 E-value=8e+02 Score=23.85 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=13.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhchHH
Q psy588 283 ELLDRNRDELEEIIKKYQDQVTKNKEFESTID 314 (903)
Q Consensus 283 eq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~ 314 (903)
.....++.++......+.+...+.+..|.+++
T Consensus 85 ~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~e 116 (147)
T PRK05689 85 QQLTQWTQKVDNARKYWQEKKQRLEALETLQE 116 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444333
No 350
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.39 E-value=3.4e+02 Score=30.01 Aligned_cols=20 Identities=15% Similarity=0.121 Sum_probs=10.9
Q ss_pred hHHHHHhhhHhHHHHHHHHH
Q psy588 312 TIDQLLNSNQEKSNTLEKLQ 331 (903)
Q Consensus 312 ~~~~L~~~~qEKqell~~v~ 331 (903)
..+.+++.+.|-++|.+++.
T Consensus 237 ~de~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 237 TDEDIRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655443
No 351
>KOG0946|consensus
Probab=20.36 E-value=1.5e+03 Score=29.47 Aligned_cols=45 Identities=9% Similarity=0.182 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy588 237 RDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNL 281 (903)
Q Consensus 237 eEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~L 281 (903)
++-.+-+..-|..++.+=-++-..-|+..+++-.-+..+.|++..
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455555555555555555555544444444444444
No 352
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=20.12 E-value=8.6e+02 Score=24.14 Aligned_cols=81 Identities=22% Similarity=0.301 Sum_probs=55.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHHHHHHHHHHHhhhccccccc
Q psy588 267 TERKLVNIENECSNLQELLDRN-RDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFT 345 (903)
Q Consensus 267 lERsL~~sE~EC~~LKeq~E~L-q~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqell~~v~~~~~~~~~~~~~~~ 345 (903)
+|-....+|-|+...|..+++. +.+|+.-.+-|.++++. ..|+...|...+---.++-.++-.+.++...-+.+++
T Consensus 5 mElrIkdLeselsk~Ktsq~d~~~~eLEkYkqly~eElk~---r~SLs~kL~ktnerLaevstkLl~Ekeq~rs~lstlt 81 (111)
T PF12001_consen 5 MELRIKDLESELSKMKTSQEDSNKTELEKYKQLYLEELKL---RKSLSNKLNKTNERLAEVSTKLLVEKEQNRSLLSTLT 81 (111)
T ss_pred HHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHhccccccccC
Confidence 4444555666777777555555 88888777777776654 4455556666666666666688888888878888887
Q ss_pred ccccc
Q psy588 346 LKDNL 350 (903)
Q Consensus 346 ~~~~~ 350 (903)
..|.+
T Consensus 82 trPvl 86 (111)
T PF12001_consen 82 TRPVL 86 (111)
T ss_pred CCCCC
Confidence 77766
No 353
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=20.10 E-value=1.1e+03 Score=25.44 Aligned_cols=65 Identities=28% Similarity=0.291 Sum_probs=49.7
Q ss_pred hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLV 272 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~ 272 (903)
-.|..+|..||.+|..- .++-.+++..++++...++...+|.-.+--.|++..++|+.+||+.|.
T Consensus 85 ~~l~~~i~~le~~lvd~-----~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 85 EDLQSRISNLEKQLVDQ-----MIEKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQLN 149 (196)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999331 123345777778888888888888887777888999999999998886
No 354
>KOG2264|consensus
Probab=20.08 E-value=6.9e+02 Score=31.21 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 264 CQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 264 LeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
+.++-|-++....|...+...-+.++.+++++..|..+
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEe 118 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEE 118 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44455555555555555555555566666666555444
Done!