Query psy588
Match_columns 903
No_of_seqs 304 out of 1571
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 20:26:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gqs_A Adenylate cyclase-like 99.7 4.4E-18 1.5E-22 152.1 11.3 91 10-116 8-100 (106)
2 3po8_A RV0020C protein, putati 99.7 1.4E-17 4.6E-22 147.3 11.0 81 18-116 15-95 (100)
3 2xt9_B Putative signal transdu 99.7 1.9E-17 6.6E-22 150.1 10.9 85 14-116 19-103 (115)
4 4h87_A Kanadaptin; FHA domain 99.7 1.6E-17 5.4E-22 155.3 9.7 75 30-114 40-125 (130)
5 1r21_A Antigen KI-67; beta san 99.7 1.7E-17 5.9E-22 152.7 9.4 98 1-116 9-106 (128)
6 1uht_A Expressed protein; FHA 99.7 2E-17 6.8E-22 150.1 8.9 96 7-115 13-108 (118)
7 1mzk_A Kinase associated prote 99.7 8.1E-17 2.8E-21 150.8 13.1 105 6-116 7-117 (139)
8 1lgp_A Cell cycle checkpoint p 99.7 2.9E-17 1E-21 148.4 9.7 93 1-111 1-96 (116)
9 3va4_A Mediator of DNA damage 99.7 4.6E-17 1.6E-21 152.7 11.1 97 3-116 23-124 (132)
10 2kb3_A Oxoglutarate dehydrogen 99.7 5E-17 1.7E-21 154.3 10.4 85 14-116 54-138 (143)
11 1dmz_A Protein (protein kinase 99.7 1.1E-16 3.9E-21 153.5 8.6 97 6-116 5-121 (158)
12 2kfu_A RV1827 PThr 22; FHA dom 99.7 1.4E-16 5E-21 154.5 8.9 84 15-116 64-147 (162)
13 2jpe_A Nuclear inhibitor of pr 99.7 5.3E-17 1.8E-21 152.0 5.2 76 31-116 55-133 (140)
14 2jqj_A DNA damage response pro 99.6 6.1E-16 2.1E-20 146.6 11.0 90 3-111 17-114 (151)
15 1gxc_A CHK2, CDS1, serine/thre 99.6 1.1E-15 3.7E-20 144.9 12.5 89 3-111 29-131 (149)
16 3oun_A Putative uncharacterize 99.6 4.1E-16 1.4E-20 151.3 9.6 80 18-115 77-156 (157)
17 1qu5_A Protein kinase SPK1; FH 99.6 3.1E-16 1E-20 154.4 8.8 97 6-116 29-145 (182)
18 1wln_A Afadin; beta sandwich, 99.6 8.9E-16 3.1E-20 140.4 11.0 84 18-116 28-112 (120)
19 3hx1_A SLR1951 protein; P74513 99.6 8.4E-16 2.9E-20 143.5 10.3 80 18-115 22-111 (131)
20 2pie_A E3 ubiquitin-protein li 99.6 8.8E-16 3E-20 143.7 10.1 71 31-111 28-103 (138)
21 2csw_A Ubiquitin ligase protei 99.6 1.8E-15 6.3E-20 142.7 9.3 72 30-111 35-111 (145)
22 1g6g_A Protein kinase RAD53; b 99.6 4E-15 1.4E-19 137.3 11.1 96 4-112 5-108 (127)
23 3els_A PRE-mRNA leakage protei 99.6 1.6E-15 5.5E-20 146.4 8.4 87 18-112 47-146 (158)
24 1g3g_A Protien kinase SPK1; FH 99.6 2.3E-15 8E-20 145.0 9.0 91 11-112 38-136 (164)
25 2ff4_A Probable regulatory pro 99.6 4.6E-15 1.6E-19 157.4 10.0 82 18-116 298-379 (388)
26 3elv_A PRE-mRNA leakage protei 99.5 7E-15 2.4E-19 148.2 8.6 86 19-112 95-193 (205)
27 4ejq_A Kinesin-like protein KI 99.5 1.4E-13 4.9E-18 131.7 11.8 76 32-116 62-142 (154)
28 3fm8_A Kinesin-like protein KI 99.4 5.9E-13 2E-17 124.5 11.6 71 32-115 49-121 (124)
29 3huf_A DNA repair and telomere 99.3 3.3E-12 1.1E-16 136.1 10.6 97 5-116 2-110 (325)
30 4a0e_A YSCD, type III secretio 99.1 1.7E-10 5.6E-15 108.9 10.0 89 9-116 7-96 (123)
31 3i6u_A CDS1, serine/threonine- 99.1 1.4E-10 4.8E-15 122.2 8.4 90 3-112 9-112 (419)
32 3uv0_A Mutator 2, isoform B; F 99.0 3E-10 1E-14 104.3 6.6 69 30-113 20-95 (102)
33 3kt9_A Aprataxin; FHA domain, 99.0 3.4E-09 1.2E-13 96.9 11.6 95 1-116 1-97 (102)
34 4egx_A Kinesin-like protein KI 98.8 2.9E-08 9.9E-13 98.2 11.2 75 32-116 92-172 (184)
35 1wv3_A Similar to DNA segregat 98.7 2.2E-08 7.5E-13 101.9 6.9 71 31-117 92-168 (238)
36 2brf_A Bifunctional polynucleo 98.5 2.6E-07 8.8E-12 85.8 8.8 89 6-114 11-103 (110)
37 1yj5_C 5' polynucleotide kinas 98.3 2.1E-06 7.2E-11 83.1 9.6 91 5-115 10-104 (143)
38 1ujx_A Polynucleotide kinase 3 98.2 9.7E-07 3.3E-11 83.1 4.2 70 32-114 37-110 (119)
39 1i84_S Smooth muscle myosin he 94.6 0.24 8.2E-06 60.4 13.9 52 250-301 887-938 (1184)
40 2dfs_A Myosin-5A; myosin-V, in 93.7 0.55 1.9E-05 57.3 14.2 34 209-244 923-956 (1080)
41 3oja_B Anopheles plasmodium-re 93.4 1.4 4.6E-05 48.7 15.6 80 261-350 515-594 (597)
42 2dfs_A Myosin-5A; myosin-V, in 92.9 0.91 3.1E-05 55.5 14.4 43 254-296 976-1018(1080)
43 2fxo_A Myosin heavy chain, car 90.7 7.1 0.00024 36.6 14.8 83 248-333 41-123 (129)
44 3vkg_A Dynein heavy chain, cyt 90.5 16 0.00054 49.7 22.8 41 263-303 2015-2055(3245)
45 2v71_A Nuclear distribution pr 90.2 17 0.00058 36.8 18.2 81 254-334 101-181 (189)
46 3vkg_A Dynein heavy chain, cyt 90.0 16 0.00055 49.7 22.2 63 248-310 2014-2076(3245)
47 2v4h_A NF-kappa-B essential mo 89.9 2.5 8.5E-05 39.8 10.7 78 260-338 29-107 (110)
48 3u1c_A Tropomyosin alpha-1 cha 89.3 8.6 0.00029 34.9 13.7 63 225-298 4-66 (101)
49 2v71_A Nuclear distribution pr 88.3 17 0.00056 36.9 16.2 75 227-301 21-95 (189)
50 3na7_A HP0958; flagellar bioge 88.1 25 0.00085 35.9 19.4 34 154-187 7-43 (256)
51 3na7_A HP0958; flagellar bioge 88.1 25 0.00085 35.9 18.8 9 366-374 210-218 (256)
52 3o0z_A RHO-associated protein 86.8 8.4 0.00029 38.5 12.8 43 263-305 91-133 (168)
53 1f5n_A Interferon-induced guan 86.2 37 0.0013 39.2 19.5 80 226-305 431-530 (592)
54 1i84_S Smooth muscle myosin he 85.0 3.2 0.00011 50.8 10.8 30 268-297 947-976 (1184)
55 3u59_A Tropomyosin beta chain; 84.8 21 0.00071 32.2 13.4 65 225-300 4-68 (101)
56 1ic2_A Tropomyosin alpha chain 84.4 9.8 0.00033 33.1 10.8 69 226-305 2-70 (81)
57 3jsv_C NF-kappa-B essential mo 77.6 17 0.00059 33.4 10.1 77 260-337 7-84 (94)
58 3mq9_A Bone marrow stromal ant 76.3 33 0.0011 37.0 13.8 82 246-331 382-467 (471)
59 3ghg_A Fibrinogen alpha chain; 76.1 17 0.00057 41.9 11.8 55 270-336 103-158 (562)
60 3q8t_A Beclin-1; autophagy, AT 73.9 51 0.0018 29.8 13.3 59 245-303 8-66 (96)
61 3ol1_A Vimentin; structural ge 70.0 36 0.0012 31.6 10.6 20 286-305 44-63 (119)
62 2fxo_A Myosin heavy chain, car 68.7 76 0.0026 29.6 16.1 57 246-302 67-123 (129)
63 2efr_A General control protein 67.6 98 0.0034 30.4 18.3 51 260-310 96-146 (155)
64 2avr_X Adhesion A; antiparalle 65.5 97 0.0033 29.6 13.2 81 204-305 6-86 (119)
65 3ghg_A Fibrinogen alpha chain; 65.2 54 0.0019 37.9 12.7 48 261-308 116-163 (562)
66 1deq_A Fibrinogen (alpha chain 65.0 1.3E+02 0.0045 33.5 15.3 19 203-221 63-81 (390)
67 3oja_A Leucine-rich immune mol 62.8 1.3E+02 0.0046 32.4 15.0 13 276-288 442-454 (487)
68 2v4h_A NF-kappa-B essential mo 59.9 50 0.0017 31.2 9.4 50 203-272 58-107 (110)
69 3hnw_A Uncharacterized protein 58.1 1.3E+02 0.0045 28.7 12.9 47 153-199 26-74 (138)
70 3swk_A Vimentin; cytoskeleton, 57.9 42 0.0015 29.8 8.3 69 266-334 4-76 (86)
71 4emc_A Monopolin complex subun 56.6 33 0.0011 34.9 8.3 54 240-293 5-58 (190)
72 3o0z_A RHO-associated protein 56.5 1.7E+02 0.0057 29.4 20.0 30 267-296 60-89 (168)
73 2v66_B Nuclear distribution pr 54.0 57 0.002 30.7 8.8 36 262-297 35-70 (111)
74 3oja_A Leucine-rich immune mol 53.2 1.3E+02 0.0046 32.4 13.0 29 253-281 365-393 (487)
75 2no2_A HIP-I, huntingtin-inter 52.5 1.4E+02 0.0049 27.5 14.1 38 262-299 54-91 (107)
76 3mq7_A Bone marrow stromal ant 50.8 91 0.0031 29.8 9.6 76 262-345 32-107 (121)
77 3tnu_B Keratin, type II cytosk 50.8 95 0.0032 28.9 9.9 43 263-305 37-79 (129)
78 3i00_A HIP-I, huntingtin-inter 48.6 50 0.0017 31.2 7.6 76 203-288 43-118 (120)
79 3q0x_A Centriole protein; cent 46.9 70 0.0024 33.2 9.1 55 247-301 162-217 (228)
80 1m1j_C Fibrinogen gamma chain; 46.8 2.9E+02 0.0097 30.8 14.4 42 264-305 93-134 (409)
81 3qh9_A Liprin-beta-2; coiled-c 46.0 68 0.0023 28.9 7.6 47 227-284 30-76 (81)
82 3tnu_A Keratin, type I cytoske 45.7 93 0.0032 29.0 9.0 42 264-305 40-81 (131)
83 3hnw_A Uncharacterized protein 44.5 1E+02 0.0036 29.4 9.3 43 259-301 72-114 (138)
84 3trt_A Vimentin; cytoskeleton, 44.1 1.5E+02 0.005 25.1 9.8 60 236-295 12-75 (77)
85 1m1j_C Fibrinogen gamma chain; 42.6 1.8E+02 0.0062 32.4 12.0 18 171-188 33-50 (409)
86 3q8t_A Beclin-1; autophagy, AT 42.0 2E+02 0.0067 26.0 11.5 20 273-292 71-90 (96)
87 3nmd_A CGMP dependent protein 41.7 60 0.0021 28.6 6.5 42 248-289 26-67 (72)
88 2ocy_A RAB guanine nucleotide 41.3 2.7E+02 0.0093 27.4 15.6 116 206-331 12-135 (154)
89 3mq9_A Bone marrow stromal ant 40.9 3.7E+02 0.013 28.9 14.5 9 298-306 444-452 (471)
90 3e98_A GAF domain of unknown f 39.7 27 0.00093 36.0 4.8 68 391-459 33-107 (252)
91 3jsv_C NF-kappa-B essential mo 39.5 68 0.0023 29.5 6.7 57 203-279 36-92 (94)
92 3u1c_A Tropomyosin alpha-1 cha 39.3 2.2E+02 0.0074 25.7 12.9 42 254-295 36-77 (101)
93 1x79_B RAB GTPase binding effe 37.5 2.7E+02 0.0092 26.3 12.4 33 269-301 38-70 (112)
94 3etw_A Adhesin A; antiparallel 37.0 2.8E+02 0.0096 26.4 13.5 15 205-219 7-21 (119)
95 1deq_A Fibrinogen (alpha chain 36.4 3.7E+02 0.013 30.1 13.0 12 240-251 87-98 (390)
96 2efr_A General control protein 36.2 3.2E+02 0.011 26.8 15.0 25 208-247 1-25 (155)
97 2fup_A Hypothetical protein PA 34.7 2.4E+02 0.0082 25.9 9.9 25 248-272 39-63 (157)
98 1f5n_A Interferon-induced guan 34.4 5.9E+02 0.02 29.4 15.1 35 261-301 514-548 (592)
99 1m1j_A Fibrinogen alpha subuni 32.0 6.4E+02 0.022 29.0 15.4 21 203-223 61-81 (491)
100 3s9g_A Protein hexim1; cyclin 31.7 3.3E+02 0.011 25.5 10.1 43 240-284 17-59 (104)
101 1m1j_B Fibrinogen beta chain; 31.2 6.3E+02 0.022 28.7 14.7 17 171-187 95-111 (464)
102 3a7p_A Autophagy protein 16; c 30.9 3.1E+02 0.011 27.1 10.2 23 164-186 30-52 (152)
103 4e81_A Chaperone protein DNAK; 30.8 1.6E+02 0.0054 29.7 8.5 17 256-272 173-189 (219)
104 3a7p_A Autophagy protein 16; c 30.0 1E+02 0.0035 30.4 6.8 21 284-304 97-117 (152)
105 4etp_A Kinesin-like protein KA 29.6 1E+02 0.0035 33.8 7.4 43 262-304 3-45 (403)
106 3bas_A Myosin heavy chain, str 29.2 3E+02 0.01 24.3 9.9 9 252-260 46-54 (89)
107 2yy0_A C-MYC-binding protein; 28.9 26 0.00088 28.9 2.0 52 611-662 1-52 (53)
108 1l8d_A DNA double-strand break 28.3 3.1E+02 0.011 24.2 10.5 23 252-274 21-43 (112)
109 1p9k_A ORF, hypothetical prote 28.2 33 0.0011 29.0 2.6 32 79-115 46-77 (79)
110 2w6a_A ARF GTPase-activating p 27.8 2E+02 0.0069 24.8 7.2 40 262-301 13-52 (63)
111 1d7m_A Cortexillin I; coiled-c 27.5 3.2E+02 0.011 25.2 9.0 16 264-279 27-42 (101)
112 3cl3_D NF-kappa-B essential mo 27.2 25 0.00084 34.0 1.8 73 255-327 9-86 (130)
113 3t98_B Nucleoporin NUP58/NUP45 26.5 3E+02 0.01 25.0 8.7 40 245-284 48-87 (93)
114 3ajw_A Flagellar FLIJ protein; 25.7 3.8E+02 0.013 24.3 15.0 39 232-270 10-48 (150)
115 1x79_B RAB GTPase binding effe 24.8 4.4E+02 0.015 24.8 12.8 66 228-300 18-83 (112)
116 3iox_A AGI/II, PA; alpha helix 24.5 8.6E+02 0.029 28.0 14.5 65 263-327 35-100 (497)
117 2i1j_A Moesin; FERM, coiled-co 23.6 53 0.0018 37.6 4.0 104 229-335 312-419 (575)
118 3u59_A Tropomyosin beta chain; 23.2 4E+02 0.014 23.8 12.9 35 260-294 42-76 (101)
119 4dk0_A Putative MACA; alpha-ha 23.1 1E+02 0.0034 31.9 5.6 88 200-297 63-150 (369)
120 1eh1_A Ribosome recycling fact 23.0 5.8E+02 0.02 25.6 10.8 66 227-305 109-174 (185)
121 3haj_A Human pacsin2 F-BAR; pa 22.3 6.1E+02 0.021 27.9 12.0 94 227-322 144-246 (486)
122 3ghg_B Fibrinogen beta chain; 21.9 6.3E+02 0.022 28.8 12.0 36 273-308 160-195 (461)
123 1m1j_B Fibrinogen beta chain; 21.8 9.1E+02 0.031 27.4 15.4 15 205-219 98-112 (464)
124 3cvf_A Homer-3, homer protein 21.4 3E+02 0.01 24.5 7.5 29 258-286 9-37 (79)
125 4gfq_A Ribosome-recycling fact 21.3 5.8E+02 0.02 26.2 10.6 66 227-305 132-197 (209)
126 1u00_A HSC66, chaperone protei 21.2 4.1E+02 0.014 26.6 9.5 13 260-272 174-186 (227)
127 3cve_A Homer protein homolog 1 21.1 3.4E+02 0.012 23.8 7.7 23 261-283 6-28 (72)
128 3iv1_A Tumor susceptibility ge 21.1 3.5E+02 0.012 24.1 7.8 25 312-336 44-68 (78)
129 3ghg_C Fibrinogen gamma chain; 20.9 2.6E+02 0.009 31.3 8.7 41 268-308 97-137 (411)
130 1d7m_A Cortexillin I; coiled-c 20.6 5.1E+02 0.017 24.0 14.6 85 175-278 3-90 (101)
131 3fpp_A Macrolide-specific effl 20.5 1.5E+02 0.005 30.3 6.2 88 198-295 60-147 (341)
No 1
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.75 E-value=4.4e-18 Score=152.12 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=79.6
Q ss_pred cCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCC-CCceeeCCccccccceEEEEE-CCEEEEEECCCCCceeeCCEe
Q psy588 10 RPNSHPFAERKLILENTANKNAAVKIGRCIARAKVA-PSNGIFDCKVLSRNHALIWYY-NGKFYLQDTKSSNGTFVNNQR 87 (903)
Q Consensus 10 ~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps-~cDIVLdDpvVSR~HAeI~~e-dG~~yIrDLGSTNGTFVNGqR 87 (903)
...++|..++.+.+.. +..++|||+ . .|+++++++.|||.||.|.+. ++.|+|+|++|+|||||||++
T Consensus 8 ~v~~G~~~g~~~~l~~----~~~~~iGR~------~~~~di~l~d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~vng~~ 77 (106)
T 3gqs_A 8 KVLAGANIGAEFHLDS----GKTYIVGSD------PQVADIVLSDMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVEGRK 77 (106)
T ss_dssp EECC-CCTTCEEEECT----TCEEEEESC------TTTCSEECCCTTSCSSCEEEEECTTSCEEEEECSCSSCCEETTEE
T ss_pred EEEeCCCCcEEEEECC----CCEEEEeEC------CCcCCEEeCCCCcchhhcEEEECCCCcEEEEECcCCCCeEECCEE
Confidence 3345677788888886 346899998 5 699999999999999999998 788999999999999999999
Q ss_pred cCCCCCCCCCeecCCCCEEEEcCceeeec
Q psy588 88 LSKTNEESAPHELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 88 Ls~g~~eSePveL~dGDIIrLG~tVLr~~ 116 (903)
+.+ ++.|++||+|+||.+.+.+.
T Consensus 78 i~~------~~~L~~Gd~i~~G~~~~~~~ 100 (106)
T 3gqs_A 78 IEH------QSTLSANQVVALGTTLFLLV 100 (106)
T ss_dssp CSS------EEECCTTCCEEETTEEEEEE
T ss_pred CCC------CeECCCCCEEEECCEEEEEE
Confidence 986 57999999999999998875
No 2
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.73 E-value=1.4e-17 Score=147.33 Aligned_cols=81 Identities=30% Similarity=0.340 Sum_probs=74.4
Q ss_pred ceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCceeeCCEecCCCCCCCCC
Q psy588 18 ERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAP 97 (903)
Q Consensus 18 ~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGTFVNGqRLs~g~~eSeP 97 (903)
++.+.+..+ .++|||+ +.|+++++++.|||.||.|.+.++.|+|+|++|+|||||||+++.+
T Consensus 15 g~~~~l~~~-----~~~IGR~------~~~di~l~d~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~vng~~i~~------- 76 (100)
T 3po8_A 15 GRTYQLREG-----SNIIGRG------QDAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNAPVQE------- 76 (100)
T ss_dssp CCEEECCSE-----EEEEESS------TTCSEECCCTTSCSSCEEEEECSSCEEEEECSCSSCCEETTEECSE-------
T ss_pred CcEEEECCC-----CEEEeCC------CCCCEECCCCCcChhhCEEEEeCCEEEEEECCCCCCEEECCEECce-------
Confidence 677787764 7999998 7899999999999999999999999999999999999999999964
Q ss_pred eecCCCCEEEEcCceeeec
Q psy588 98 HELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 98 veL~dGDIIrLG~tVLr~~ 116 (903)
++|.+||+|.||.+.+.+.
T Consensus 77 ~~L~~gd~i~iG~~~~~~~ 95 (100)
T 3po8_A 77 WQLADGDVIRLGHSEIIVR 95 (100)
T ss_dssp EECCTTCEEEETTEEEEEE
T ss_pred EECCCCCEEEECCEEEEEE
Confidence 8999999999999988775
No 3
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.72 E-value=1.9e-17 Score=150.14 Aligned_cols=85 Identities=31% Similarity=0.403 Sum_probs=76.4
Q ss_pred CCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCceeeCCEecCCCCC
Q psy588 14 HPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNE 93 (903)
Q Consensus 14 hPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGTFVNGqRLs~g~~ 93 (903)
+|..++.+.+..+ .++|||+ ..|+++++++.|||.||.|.+.++.|+|+|++|+|||||||+++.+
T Consensus 19 g~~~g~~~~l~~~-----~~~IGR~------~~~di~l~d~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~vng~~i~~--- 84 (115)
T 2xt9_B 19 GPNAGSRFLLDQP-----TTSAGRH------PDSDIFLDDVTVSRRHAEFRLEGGEFQVVDVGSLNGTYVNREPVDS--- 84 (115)
T ss_dssp STTTTCEEEECSS-----EEEEESS------TTSSEECCSTTSCSSCEEEEEETTEEEEEECSCSSCEEETTEECSE---
T ss_pred CCCCCeEEEECCC-----CEEECCC------CCCCEEeCCcccChhheEEEEECCEEEEEECCCCCCeEECCEEcce---
Confidence 4556677777763 7999999 6899999999999999999999999999999999999999999974
Q ss_pred CCCCeecCCCCEEEEcCceeeec
Q psy588 94 ESAPHELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 94 eSePveL~dGDIIrLG~tVLr~~ 116 (903)
+.|++||+|+||.+.+.+.
T Consensus 85 ----~~L~~gd~i~iG~~~l~~~ 103 (115)
T 2xt9_B 85 ----AVLANGDEVQIGKFRLVFL 103 (115)
T ss_dssp ----EEECTTCEEEETTEEEEEE
T ss_pred ----EECCCCCEEEECCEEEEEE
Confidence 8999999999999988875
No 4
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=155.30 Aligned_cols=75 Identities=28% Similarity=0.401 Sum_probs=65.2
Q ss_pred CCeEEEcCCCCcCCCCCCceeeCCccccccceEEEE-----------ECCEEEEEECCCCCceeeCCEecCCCCCCCCCe
Q psy588 30 NAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWY-----------YNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPH 98 (903)
Q Consensus 30 G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~-----------edG~~yIrDLGSTNGTFVNGqRLs~g~~eSePv 98 (903)
...++|||+ ..||++++++.|||+||.|.+ .++.|+|+|++|+|||||||+||.+ ..|+
T Consensus 40 ~~~~~IGR~------~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~vNg~ri~~----~~~~ 109 (130)
T 4h87_A 40 TSYCLFGRL------SGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRIPP----RTYC 109 (130)
T ss_dssp CSEEEEESS------TTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEETTEECCT----TCCE
T ss_pred CceEEEcCC------cCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEECCEECCC----Ccee
Confidence 346899998 789999999999999999975 4667999999999999999999987 3579
Q ss_pred ecCCCCEEEEcCceee
Q psy588 99 ELCSGDVVQFGVDVIE 114 (903)
Q Consensus 99 eL~dGDIIrLG~tVLr 114 (903)
+|++||+|+||.....
T Consensus 110 ~L~~GD~I~~G~str~ 125 (130)
T 4h87_A 110 RVHVGHVVRFGGSTRL 125 (130)
T ss_dssp ECCTTCEEEETTCSEE
T ss_pred ECCCCCEEEECCceEE
Confidence 9999999999986543
No 5
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.71 E-value=1.7e-17 Score=152.69 Aligned_cols=98 Identities=21% Similarity=0.171 Sum_probs=82.4
Q ss_pred CCCceEEEecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCc
Q psy588 1 MAGTAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNG 80 (903)
Q Consensus 1 MtA~aVLt~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNG 80 (903)
|++++.|+.... ++..++.+.+.. ..++|||+ ..|+++++++.|||+||.|.+.++.|+|+|++|+||
T Consensus 9 ~~~~~~L~v~~~-~~~~g~~~~l~~-----~~~~IGR~------~~~di~l~d~~VSr~Ha~i~~~~~~~~l~Dl~S~nG 76 (128)
T 1r21_A 9 MWPTRRLVTIKR-SGVDGPHFPLSL-----STCLFGRG------IECDIRIQLPVVSKQHCKIEIHEQEAILHNFSSTNP 76 (128)
T ss_dssp CCCCEEEEEEEE-TTEEEEEEECCS-----SEEEEESS------TTSSEECCCTTSCTTCEEEEECSSCEEECCCCSSSC
T ss_pred CCCceEEEEEeC-CCCCceEEEECC-----CCEEECCC------CCCCEEECCCCCChhHEEEEEECCEEEEEECCCCCC
Confidence 445555555432 244466777765 38999998 679999999999999999999999999999999999
Q ss_pred eeeCCEecCCCCCCCCCeecCCCCEEEEcCceeeec
Q psy588 81 TFVNNQRLSKTNEESAPHELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 81 TFVNGqRLs~g~~eSePveL~dGDIIrLG~tVLr~~ 116 (903)
|||||+++.. ++.|++||+|.||.+.+++.
T Consensus 77 t~vNg~~i~~------~~~L~~Gd~i~iG~~~~~~~ 106 (128)
T 1r21_A 77 TQVNGSVIDE------PVRLKHGDVITIIDRSFRYE 106 (128)
T ss_dssp CEETTEECSS------CEECCTTEEEECSSCEEEEE
T ss_pred EEECCEECCC------cEEcCCCCEEEECCEEEEEE
Confidence 9999999975 68999999999999988876
No 6
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.70 E-value=2e-17 Score=150.13 Aligned_cols=96 Identities=25% Similarity=0.284 Sum_probs=78.9
Q ss_pred EEecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCceeeCCE
Q psy588 7 LTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQ 86 (903)
Q Consensus 7 Lt~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGTFVNGq 86 (903)
+.+....+|..++.+.+.. +..++|||+ +..|+++++++.|||+||+|.+.++.|+|+|++|+|||||||+
T Consensus 13 l~L~v~~g~~~g~~~~l~~----~~~~~iGR~-----~~~~di~l~d~~vSr~Ha~i~~~~~~~~l~Dl~S~nGT~vng~ 83 (118)
T 1uht_A 13 LRLVFVKGPREGDALDYKP----GSTIRVGRI-----VRGNEIAIKDAGISTKHLRIESDSGNWVIQDLGSSNGTLLNSN 83 (118)
T ss_dssp EEEEESSSTTTTCBCCBCT----TCCEEEESS-----STTCSEECCSSSSCTTCEEEEECSSSEEEECCCCSSCCEESSS
T ss_pred EEEEEEeCCCCCcEEEECC----CCEEEEcCC-----CCCCCEEeCCCCCchHHeEEEEECCEEEEEECCCCCCeEECCE
Confidence 3333444555566666654 347999997 2479999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCeecCCCCEEEEcCceeee
Q psy588 87 RLSKTNEESAPHELCSGDVVQFGVDVIET 115 (903)
Q Consensus 87 RLs~g~~eSePveL~dGDIIrLG~tVLr~ 115 (903)
++.++ .+++|++||+|+||.+.+.+
T Consensus 84 ~l~~~----~~~~L~~gd~i~lG~~~~~~ 108 (118)
T 1uht_A 84 ALDPE----TSVNLGDGDVIKLGEYTSIL 108 (118)
T ss_dssp BCCTT----CEEECCTTEEEEETTTEEEE
T ss_pred ECCCC----CeEEcCCCCEEEECCeEEEE
Confidence 99873 46899999999999987654
No 7
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.70 E-value=8.1e-17 Score=150.79 Aligned_cols=105 Identities=28% Similarity=0.339 Sum_probs=85.2
Q ss_pred EEEecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECC--EEEEEECCCCCceee
Q psy588 6 ILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNG--KFYLQDTKSSNGTFV 83 (903)
Q Consensus 6 VLt~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG--~~yIrDLGSTNGTFV 83 (903)
.+.+....+|..++.+.+..+......++|||+ ..|+++++++.|||+||+|.+.++ .|+|+|++|+|||||
T Consensus 7 ~~~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~------~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~DlgS~NGT~v 80 (139)
T 1mzk_A 7 WLFLEVIAGPAIGLQHAVNSTSSSKLPVKLGRV------SPSDLALKDSEVSGKHAQITWNSTKFKWELVDMGSLNGTLV 80 (139)
T ss_dssp EEEEEECSSTTCSCEEEECTTCSTTCSEEEESS------SSCSEECCCTTSSSEEEEEEEETTTTEEEEEETTCSSCCEE
T ss_pred eEEEEEEeCCCCCeEEEecCCCCccceEEeeCC------CCCCEEeCCCCCChHHcEEEEECCCCEEEEEECCCCCCEEE
Confidence 344455567888888998874333347999999 679999999999999999999874 799999999999999
Q ss_pred CCEecCCC----CCCCCCeecCCCCEEEEcCceeeec
Q psy588 84 NNQRLSKT----NEESAPHELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 84 NGqRLs~g----~~eSePveL~dGDIIrLG~tVLr~~ 116 (903)
||+++.+. .....+++|++||+|+||.+.+.+.
T Consensus 81 Ng~~i~~~~~~~~~~~~~~~L~~GD~I~iG~~~~~~~ 117 (139)
T 1mzk_A 81 NSHSISHPDLGSRKWGNPVELASDDIITLGTTTKVYV 117 (139)
T ss_dssp TTEESSCCCTTTCCCCCCEECCTTEEEECSSSCEEEE
T ss_pred CCEECcCcccccccCCceEECCCCCEEEECCEEEEEE
Confidence 99999840 0012479999999999999988764
No 8
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.70 E-value=2.9e-17 Score=148.35 Aligned_cols=93 Identities=25% Similarity=0.294 Sum_probs=78.6
Q ss_pred CCCceEEEecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCc-cccccceEEEEE--CCEEEEEECCC
Q psy588 1 MAGTAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCK-VLSRNHALIWYY--NGKFYLQDTKS 77 (903)
Q Consensus 1 MtA~aVLt~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDp-vVSR~HAeI~~e--dG~~yIrDLGS 77 (903)
|.+|+.|++... ....+.+.+.. ..++|||+ +.|++++++. .|||.||.|.+. ++.|+|+| +|
T Consensus 1 M~~wg~L~~~~~--~~~~~~~~l~~-----~~~~iGR~------~~~di~l~~~~~vSr~Ha~i~~~~~~~~~~l~D-~S 66 (116)
T 1lgp_A 1 MQPWGRLLRLGA--EEGEPHVLLRK-----REWTIGRR------RGCDLSFPSNKLVSGDHCRIVVDEKSGQVTLED-TS 66 (116)
T ss_dssp CCCCEEECCTTC--CSSSCCEEECS-----SEEEEESS------TTSSEECTTCTTSCTTCEEEEECTTTCCEEEEE-CS
T ss_pred CCCEEEEEEeCC--CCCccEEEECC-----CCEEECCC------CCCCEEeCCCCCCChhHeEEEEECCCCeEEEEE-CC
Confidence 889999876643 23345666665 38999999 6899999764 899999999996 88999999 99
Q ss_pred CCceeeCCEecCCCCCCCCCeecCCCCEEEEcCc
Q psy588 78 SNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVD 111 (903)
Q Consensus 78 TNGTFVNGqRLs~g~~eSePveL~dGDIIrLG~t 111 (903)
+|||||||+++.++ .+++|++||+|.||..
T Consensus 67 ~NGt~vng~~l~~~----~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 67 TSGTVINKLKVVKK----QTCPLQTGDVIYLVYR 96 (116)
T ss_dssp SSCCCCCCCCCCCS----SCCCCCTTCEEEEECC
T ss_pred cCCcEECCEEcCCC----CcEECCCCCEEEEecc
Confidence 99999999999873 4799999999999985
No 9
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.70 E-value=4.6e-17 Score=152.69 Aligned_cols=97 Identities=24% Similarity=0.203 Sum_probs=81.5
Q ss_pred CceEEEecCCCCCC-cceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEE--CCEEEEEECCCCC
Q psy588 3 GTAILTCRPNSHPF-AERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYY--NGKFYLQDTKSSN 79 (903)
Q Consensus 3 A~aVLt~~p~ShPf-~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~e--dG~~yIrDLGSTN 79 (903)
+++.|.+. ++|. .++.+.+..+ .++|||+ +.|+++++++.|||.||.|.+. ++.|+|+|++|+|
T Consensus 23 p~g~L~v~--~g~~~~g~~~~L~~~-----~~~IGR~------~~~di~l~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~N 89 (132)
T 3va4_A 23 PIGQLRLF--SGTHGPERDFPLYLG-----KNVVGRS------PDCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLN 89 (132)
T ss_dssp CSEEEEEC--CBTTBSCEEEEECSE-----EEEEESS------TTSSEECCCTTSCTTCEEEEECSTTSCCEEEECSCSS
T ss_pred CcEEEEEE--eCCCCCceEEEECCC-----CEEEccC------CCCCEEeCCCCcChhHEEEEEEcCCCEEEEEECCCCC
Confidence 44555544 3444 6778888764 7999998 6899999999999999999996 6889999999999
Q ss_pred ceeeCCEe--cCCCCCCCCCeecCCCCEEEEcCceeeec
Q psy588 80 GTFVNNQR--LSKTNEESAPHELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 80 GTFVNGqR--Ls~g~~eSePveL~dGDIIrLG~tVLr~~ 116 (903)
||||||++ +.+ ..++.|.+||+|+||.+.+++.
T Consensus 90 GT~vNg~~i~l~~----~~~~~L~~GD~I~lG~~~l~f~ 124 (132)
T 3va4_A 90 GTQIVKPPRVLPP----GVSHRLRDQELILFADFPCQYH 124 (132)
T ss_dssp CEEETTTTEEECT----TCCEECCTTCEEEETTEEEEEE
T ss_pred CeEECCEEcccCC----CCEEECCCCCEEEECCEEEEEE
Confidence 99999998 444 3468999999999999999886
No 10
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.69 E-value=5e-17 Score=154.27 Aligned_cols=85 Identities=28% Similarity=0.380 Sum_probs=74.7
Q ss_pred CCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCceeeCCEecCCCCC
Q psy588 14 HPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNE 93 (903)
Q Consensus 14 hPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGTFVNGqRLs~g~~ 93 (903)
+|..++.+.+.. ..++|||+ ..|+++++++.|||+||.|.+.++.|+|+|++|+|||||||+++.+
T Consensus 54 G~~~g~~~~L~~-----~~~~IGR~------~~~di~l~d~~VSr~Ha~I~~~~~~~~l~DlgS~NGT~VNg~~i~~--- 119 (143)
T 2kb3_A 54 GPNAGARFLLDQ-----PTTTAGRH------PESDIFLDDVTVSRRHAEFRINEGEFEVVDVGSLNGTYVNREPRNA--- 119 (143)
T ss_dssp STTTTCEEEECS-----SEEEESSC------TTCSBCCCCSSCCSSSEEEEEETTEEEEEESCCSSCCEETTEECSE---
T ss_pred CCCCCeEEEeCC-----CCeeccCC------CCCCEEeCCCCcChhhEEEEEECCEEEEEECCCcCCeEECCEEcce---
Confidence 344455666654 27999998 6899999999999999999999999999999999999999999974
Q ss_pred CCCCeecCCCCEEEEcCceeeec
Q psy588 94 ESAPHELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 94 eSePveL~dGDIIrLG~tVLr~~ 116 (903)
+.|++||+|+||...+.+.
T Consensus 120 ----~~L~~GD~I~iG~~~l~f~ 138 (143)
T 2kb3_A 120 ----QVMQTGDEIQIGKFRLVFL 138 (143)
T ss_dssp ----EECCTTEEEEETTEEEEEE
T ss_pred ----EECCCCCEEEECCEEEEEE
Confidence 8999999999999988875
No 11
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.66 E-value=1.1e-16 Score=153.47 Aligned_cols=97 Identities=24% Similarity=0.333 Sum_probs=83.6
Q ss_pred EEEecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEEC---------------CEE
Q psy588 6 ILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYN---------------GKF 70 (903)
Q Consensus 6 VLt~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~ed---------------G~~ 70 (903)
.|++.|..++...+.+.+..+ ..+++|||+ +.|+++++++.|||+||.|++.+ +.|
T Consensus 5 ~l~L~p~~~~~~~~~i~L~~~---~~~~~IGR~------~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~ 75 (158)
T 1dmz_A 5 FLTLKPLPDSIIQESLEIQQG---VNPFFIGRS------EDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDI 75 (158)
T ss_dssp CEEEEECTTSSCCCCEEETTS---CSCEEEESS------TTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEE
T ss_pred EEEEEeCCCCccceEEEEcCC---CceEEECCC------CCCCEEeCCCCcChHHeEEEEecCccccccccccccccccE
Confidence 456777777888888998863 345999999 68999999999999999999976 889
Q ss_pred EEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEEE-----cCceeeec
Q psy588 71 YLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQF-----GVDVIETN 116 (903)
Q Consensus 71 yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrL-----G~tVLr~~ 116 (903)
+|+|+ |+|||||||+|+.++ .+++|++||+|+| |...+.+.
T Consensus 76 ~l~Dl-StNGT~VNg~ri~~~----~~~~L~~GD~I~l~~d~~G~~~l~f~ 121 (158)
T 1dmz_A 76 WYCHT-GTNVSYLNNNRMIQG----TKFLLQDGDEIKIIWDKNNKFVIGFK 121 (158)
T ss_dssp EEEEC-STTCCEETTEECCSS----EEEECCSSCCEESCCCTTTTCCCCEE
T ss_pred EEEEC-CcCCeEECCEEcCCC----ceEEcCCCCEEEEeecCCCCEEEEEE
Confidence 99999 999999999999874 4699999999999 88766554
No 12
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.65 E-value=1.4e-16 Score=154.46 Aligned_cols=84 Identities=32% Similarity=0.407 Sum_probs=73.7
Q ss_pred CCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCceeeCCEecCCCCCC
Q psy588 15 PFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEE 94 (903)
Q Consensus 15 Pf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGTFVNGqRLs~g~~e 94 (903)
|..++.+.+.. ..++|||+ ..|+++++++.|||+||+|.+.++.|+|+|++|+|||||||+++.+
T Consensus 64 ~~~g~~~~L~~-----~~~~IGR~------~~~di~l~d~~VSr~HA~I~~~~~~~~l~DlgS~NGT~VNg~~i~~---- 128 (162)
T 2kfu_A 64 PNAGSRFLLDQ-----AITSAGRH------PDSDIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYVNREPVDS---- 128 (162)
T ss_dssp TTCSCEEETTS-----SEEEEESC------SSSSEESTTTSSSSCSEEEEEETTEEEEECCCCSSCEEETTBCCSE----
T ss_pred CCCCeEEEECC-----CCEEECCC------CCCCEEECCCCcChhhEEEEEECCEEEEEECCCCCCeEECCEEcce----
Confidence 33445555543 37899998 6899999999999999999999999999999999999999999974
Q ss_pred CCCeecCCCCEEEEcCceeeec
Q psy588 95 SAPHELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 95 SePveL~dGDIIrLG~tVLr~~ 116 (903)
+.|++||+|+||...+.+.
T Consensus 129 ---~~L~~GD~I~iG~~~l~f~ 147 (162)
T 2kfu_A 129 ---AVLANGDEVQIGKFRLVFL 147 (162)
T ss_dssp ---EECCSSCEEEETTEEEEEE
T ss_pred ---EECCCCCEEEECCEEEEEE
Confidence 8999999999999988876
No 13
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.65 E-value=5.3e-17 Score=151.98 Aligned_cols=76 Identities=26% Similarity=0.391 Sum_probs=68.2
Q ss_pred CeEEEcCCCCcCCCCC-CceeeCCccccccceEEEEEC--CEEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEE
Q psy588 31 AAVKIGRCIARAKVAP-SNGIFDCKVLSRNHALIWYYN--GKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQ 107 (903)
Q Consensus 31 ~~VtIGRssdrgrps~-cDIVLdDpvVSR~HAeI~~ed--G~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIr 107 (903)
..++|||+ .. |+++++++.|||+||+|.+.+ +.|+|+|++|+|||||||+++.++ .+++|.+||+|+
T Consensus 55 ~~~~IGR~------~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~vNg~~l~~~----~~~~L~~gd~i~ 124 (140)
T 2jpe_A 55 KYYLFGRN------PDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPH----KPQQIPIDSTVS 124 (140)
T ss_dssp SBCCBSSC------TTTSSSCCCCSSSCTTSBEEEEBSSSCCEEEECCSCSSCEESSSCEECSS----SCCEECTTCCBB
T ss_pred CeEEecCC------CccCCEEeCCCCcChhheEEEEECCCCcEEEEECCCCCCeEECCEECCCC----ccEECCCCCEEE
Confidence 35889998 56 999999999999999999987 899999999999999999999863 469999999999
Q ss_pred EcCceeeec
Q psy588 108 FGVDVIETN 116 (903)
Q Consensus 108 LG~tVLr~~ 116 (903)
||.+.+.+.
T Consensus 125 ~G~~~~~f~ 133 (140)
T 2jpe_A 125 FGASTRAYT 133 (140)
T ss_dssp CSSCCCCBC
T ss_pred ECCceEEEE
Confidence 999877654
No 14
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.64 E-value=6.1e-16 Score=146.64 Aligned_cols=90 Identities=30% Similarity=0.343 Sum_probs=74.0
Q ss_pred CceEEEecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEE--------ECCEEEEEE
Q psy588 3 GTAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWY--------YNGKFYLQD 74 (903)
Q Consensus 3 A~aVLt~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~--------edG~~yIrD 74 (903)
+|+.|+... |..++.+.+.. +..++|||+ ..|+++++++.|||.||.|.+ .++.|+|+|
T Consensus 17 ~~~~L~~~~---~~~g~~~~l~~----~~~~~IGR~------~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~D 83 (151)
T 2jqj_A 17 CLGHLVNLI---PGKEQKVEITN----RNVTTIGRS------RSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVID 83 (151)
T ss_dssp EEEEEEEEE---TTEEEEEEEEC----CSCEEEESS------TTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEE
T ss_pred ceEEEEEec---CCCceEEEEcC----CCeEEeCCC------CCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEE
Confidence 345555432 22456666653 237999999 689999999999999999999 788999999
Q ss_pred CCCCCceeeCCEecCCCCCCCCCeecCCCCEEEEcCc
Q psy588 75 TKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVD 111 (903)
Q Consensus 75 LGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrLG~t 111 (903)
+ |+|||||||+++.++ +++|.+||+|.||.+
T Consensus 84 l-S~NGT~VNg~~i~~~-----~~~L~~GD~I~lG~~ 114 (151)
T 2jqj_A 84 K-SRNGTFINGNRLVKK-----DYILKNGDRIVFGKS 114 (151)
T ss_dssp C-CSSCEEETTEECCSS-----CEEECSSEEEEETTT
T ss_pred C-CCCCeEECCEEcCCC-----ceECCCCCEEEECCC
Confidence 9 999999999999872 689999999999984
No 15
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.64 E-value=1.1e-15 Score=144.90 Aligned_cols=89 Identities=26% Similarity=0.294 Sum_probs=73.9
Q ss_pred CceEEEecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCcc---------ccccceEEEEECC-----
Q psy588 3 GTAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKV---------LSRNHALIWYYNG----- 68 (903)
Q Consensus 3 A~aVLt~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpv---------VSR~HAeI~~edG----- 68 (903)
+|+.|++...+.+ .+.+.. ..++|||+ +.|+++++++. |||+||+|.+.++
T Consensus 29 ~w~~L~~~~~~~~----~i~L~~-----~~~~IGR~------~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~ 93 (149)
T 1gxc_A 29 PWARLWALQDGFA----NLECVN-----DNYWFGRD------KSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSY 93 (149)
T ss_dssp CCEEEEECSTTCC----CEEECS-----SEEEEESS------TTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSE
T ss_pred eeEEEEEcCCCCc----eEEECC-----CCEEecCC------CCCCEEECCccccccccCCcCchhheEEEEECCCCcee
Confidence 5677776654332 356654 38999999 68999999885 9999999999776
Q ss_pred EEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEEEcCc
Q psy588 69 KFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVD 111 (903)
Q Consensus 69 ~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrLG~t 111 (903)
.|+|+|+ |+|||||||+|+.++ .+++|++||+|.||..
T Consensus 94 ~~~i~D~-StNGT~VNg~~i~~~----~~~~L~~GD~I~lG~~ 131 (149)
T 1gxc_A 94 IAYIEDH-SGNGTFVNTELVGKG----KRRPLNNNSEIALSLS 131 (149)
T ss_dssp EEEEEEC-CSSCEEETTEECCTT----CEEECCTTEEEEESST
T ss_pred EEEEEEC-CCCCeEECCEECCCC----CeEECCCCCEEEECCC
Confidence 8999996 999999999999974 4699999999999985
No 16
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.64 E-value=4.1e-16 Score=151.25 Aligned_cols=80 Identities=30% Similarity=0.343 Sum_probs=72.5
Q ss_pred ceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCceeeCCEecCCCCCCCCC
Q psy588 18 ERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAP 97 (903)
Q Consensus 18 ~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGTFVNGqRLs~g~~eSeP 97 (903)
.+.+.+..+ .++|||+ ..|+++++++.|||.||+|.+.++.|+|+|++|+|||||||+++.+
T Consensus 77 g~~~~L~~~-----~~~IGR~------~~~dI~L~d~~VSr~HA~I~~~~~~~~l~DlgStNGT~VNG~~i~~------- 138 (157)
T 3oun_A 77 GRTYQLREG-----SNIIGRG------QDAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNAPVQE------- 138 (157)
T ss_dssp CCEEECCSE-----EEEEESS------TTCSEECCCTTSCTTCEEEEECSSCEEEEECSCSSCCEETTEECSE-------
T ss_pred CeEEEECCC-----cEEEEeC------CCCCEEeCCCCcChhHEEEEEECCEEEEEECCCCCCeEECCEECce-------
Confidence 566666653 7999998 7899999999999999999999999999999999999999999974
Q ss_pred eecCCCCEEEEcCceeee
Q psy588 98 HELCSGDVVQFGVDVIET 115 (903)
Q Consensus 98 veL~dGDIIrLG~tVLr~ 115 (903)
++|.+||+|+||.+.+++
T Consensus 139 ~~L~~GD~I~lG~~~l~f 156 (157)
T 3oun_A 139 WQLADGDVIRLGHSEIIV 156 (157)
T ss_dssp EECCTTCEEEETTEEEEE
T ss_pred EECCCCCEEEECCEEEEE
Confidence 899999999999998875
No 17
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.63 E-value=3.1e-16 Score=154.38 Aligned_cols=97 Identities=24% Similarity=0.333 Sum_probs=83.4
Q ss_pred EEEecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEEC---------------CEE
Q psy588 6 ILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYN---------------GKF 70 (903)
Q Consensus 6 VLt~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~ed---------------G~~ 70 (903)
.+.+.+...+...+.+.+..| +.+++|||+ +.|+++++++.|||.||.|++.+ +.|
T Consensus 29 ~l~L~~~~~~~~~~~i~L~~~---~~~~~IGR~------~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~ 99 (182)
T 1qu5_A 29 FLTLKPLPDSIIQESLEIQQG---VNPFFIGRS------EDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDI 99 (182)
T ss_dssp CEEECCCTTSSSCSCCCBTTC---CSSEEESSS------TTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEE
T ss_pred EEEEEeCCCCCcceEEEEcCC---CceEEECCC------CCCCEEECCCCcChHHeEEEEecCccccccccccccccceE
Confidence 456677777777777877763 335999999 68999999999999999999987 899
Q ss_pred EEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEEE-----cCceeeec
Q psy588 71 YLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQF-----GVDVIETN 116 (903)
Q Consensus 71 yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrL-----G~tVLr~~ 116 (903)
+|+|+ |+|||||||+||.++ .+++|++||+|.| |...+.+.
T Consensus 100 ~l~Dl-StNGT~VNg~ri~~~----~~~~L~~GD~I~l~~d~~G~~~l~f~ 145 (182)
T 1qu5_A 100 WYCHT-GTNVSYLNNNRMIQG----TKFLLQDGDEIKIIWDKNNKFVIGFK 145 (182)
T ss_dssp EECCC-SSSCCEETTEECCSS----EEEECCTTBCCEEEEEGGGTEEEECC
T ss_pred EEEEC-CcCCeEECCEEcCCC----cceEcCCCCEEEEEEcCCCCEEEEEE
Confidence 99999 999999999999874 4699999999999 88877765
No 18
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.63 E-value=8.9e-16 Score=140.38 Aligned_cols=84 Identities=20% Similarity=0.228 Sum_probs=73.2
Q ss_pred ceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCceeeCCEecCCCCCCCCC
Q psy588 18 ERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAP 97 (903)
Q Consensus 18 ~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGTFVNGqRLs~g~~eSeP 97 (903)
++.+.+..+ .++|||. +...|+++++++.|||+||.|.+.++.|+|+|++|+|||||||+++.. +
T Consensus 28 ~~~~~L~~~-----~~~IGr~----r~~~~di~l~~~~vSr~Ha~i~~~~~~~~l~dl~S~ngt~vNg~~i~~------~ 92 (120)
T 1wln_A 28 PKLYRLQLS-----VTEVGTE----KFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDAETYVDGQRISE------T 92 (120)
T ss_dssp CCEEECCSE-----EEECSSS----CCSTTCCCCCCTTCCSSCEEEEESSSCEEEEESCSSSCEEETSCBCSS------C
T ss_pred cEEEEECCC-----CEEECCC----CCCCCcEEECCCCCchhheEEEEcCCEEEEEECCCCCCEEECCEEcCC------C
Confidence 566777653 7899974 125899999999999999999999999999999999999999999975 6
Q ss_pred eecCCCCEEEEcC-ceeeec
Q psy588 98 HELCSGDVVQFGV-DVIETN 116 (903)
Q Consensus 98 veL~dGDIIrLG~-tVLr~~ 116 (903)
++|++||+|.||. ..+++.
T Consensus 93 ~~L~~GD~I~iG~~~~~~f~ 112 (120)
T 1wln_A 93 TMLQSGMRLQFGTSHVFKFV 112 (120)
T ss_dssp EEECTTCEEEETTTEEEEEE
T ss_pred EECCCCCEEEECCceEEEEE
Confidence 8999999999999 677664
No 19
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.63 E-value=8.4e-16 Score=143.50 Aligned_cols=80 Identities=24% Similarity=0.400 Sum_probs=69.2
Q ss_pred ceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEE---CC--EEEEEEC-----CCCCceeeCCEe
Q psy588 18 ERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYY---NG--KFYLQDT-----KSSNGTFVNNQR 87 (903)
Q Consensus 18 ~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~e---dG--~~yIrDL-----GSTNGTFVNGqR 87 (903)
.+.+.+.. ..++|||+ ..|+++++++.|||.||.|.+. +| .|+|+|+ +|+|||||||++
T Consensus 22 ~~~~~l~~-----~~~~IGR~------~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT~vNg~~ 90 (131)
T 3hx1_A 22 RREVLLTE-----TFYTIGRS------PRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMINGKK 90 (131)
T ss_dssp EEEEEECS-----SEEEEESS------TTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCEEETTEE
T ss_pred cEEEEECC-----CCEEECCC------CCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCceEECCEE
Confidence 56666665 37999999 6799999999999999999985 33 4999999 799999999999
Q ss_pred cCCCCCCCCCeecCCCCEEEEcCceeee
Q psy588 88 LSKTNEESAPHELCSGDVVQFGVDVIET 115 (903)
Q Consensus 88 Ls~g~~eSePveL~dGDIIrLG~tVLr~ 115 (903)
+.+ +.|.+||+|+||.+.+.+
T Consensus 91 i~~-------~~L~~GD~I~iG~~~~~~ 111 (131)
T 3hx1_A 91 VQE-------HIIQTGDEIVMGPQVSVR 111 (131)
T ss_dssp ESE-------EECCTTCEEECSTTCEEE
T ss_pred eEe-------EECCCCCEEEECCEEEEE
Confidence 975 899999999999987755
No 20
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.62 E-value=8.8e-16 Score=143.65 Aligned_cols=71 Identities=31% Similarity=0.471 Sum_probs=65.4
Q ss_pred CeEEEcCCCCcCCCCCCceeeCCcc----ccccceEEEE-ECCEEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCE
Q psy588 31 AAVKIGRCIARAKVAPSNGIFDCKV----LSRNHALIWY-YNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDV 105 (903)
Q Consensus 31 ~~VtIGRssdrgrps~cDIVLdDpv----VSR~HAeI~~-edG~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDI 105 (903)
..++|||+ +.|+++++++. |||.||.|.+ .++.|+|+|++|+|||||||+++.++ .+++|++||+
T Consensus 28 ~~~~IGR~------~~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg~~l~~~----~~~~L~~GD~ 97 (138)
T 2pie_A 28 CEVTVGRG------FGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPL----RVYSIHQGDY 97 (138)
T ss_dssp CCEEEESS------SSSSEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCSSCEEETTEECCTT----CCEECCTTCE
T ss_pred CeEEECCC------CCCCEEeCCCCcCCCCChhHeEEEEcCCCcEEEEECCCCCCeEECCEEcCCC----CcEECCCCCE
Confidence 47999999 68999999998 9999999999 68889999999999999999999873 5799999999
Q ss_pred EEEcCc
Q psy588 106 VQFGVD 111 (903)
Q Consensus 106 IrLG~t 111 (903)
|.||..
T Consensus 98 I~lG~~ 103 (138)
T 2pie_A 98 IQLGVP 103 (138)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999984
No 21
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.59 E-value=1.8e-15 Score=142.72 Aligned_cols=72 Identities=31% Similarity=0.463 Sum_probs=65.7
Q ss_pred CCeEEEcCCCCcCCCCCCceeeCCcc----ccccceEEEE-ECCEEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCC
Q psy588 30 NAAVKIGRCIARAKVAPSNGIFDCKV----LSRNHALIWY-YNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGD 104 (903)
Q Consensus 30 G~~VtIGRssdrgrps~cDIVLdDpv----VSR~HAeI~~-edG~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGD 104 (903)
+..++|||. +.|+++++++. |||.||+|.+ .++.|+|+|++|+|||||||+++.+ ..|++|++||
T Consensus 35 ~~~~~IGR~------~~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg~~i~~----~~~~~L~~GD 104 (145)
T 2csw_A 35 GCEVTVGRG------FGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEP----LRVYSIHQGD 104 (145)
T ss_dssp TCCEEEESS------TTSSEECCCSSCGGGSCTTCEEEEECTTSCEEEEBSSCSSCEEESSCBCCB----TCCEECCSSC
T ss_pred CCcEEECCC------CCCCEEECCCCcCCCCChhHeEEEEcCCCeEEEEECCCCCCeEECCEECCC----CccEECCCCC
Confidence 347999999 68999999998 9999999999 5888999999999999999999987 3579999999
Q ss_pred EEEEcCc
Q psy588 105 VVQFGVD 111 (903)
Q Consensus 105 IIrLG~t 111 (903)
+|+||..
T Consensus 105 ~I~iG~~ 111 (145)
T 2csw_A 105 YIQLGVP 111 (145)
T ss_dssp CEEESCC
T ss_pred EEEECCC
Confidence 9999994
No 22
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.59 E-value=4e-15 Score=137.27 Aligned_cols=96 Identities=27% Similarity=0.411 Sum_probs=75.9
Q ss_pred ceEEEecCCCCCCcceEEEEccc------CCCCCeEEEcCCCCcCCCCCCceeeCCc-cccccceEEEE-ECCEEEEEEC
Q psy588 4 TAILTCRPNSHPFAERKLILENT------ANKNAAVKIGRCIARAKVAPSNGIFDCK-VLSRNHALIWY-YNGKFYLQDT 75 (903)
Q Consensus 4 ~aVLt~~p~ShPf~~RtL~L~sG------p~~G~~VtIGRssdrgrps~cDIVLdDp-vVSR~HAeI~~-edG~~yIrDL 75 (903)
.+.|.|.....| ...+....+ ......++|||+ +.|+++++++ .|||.||.|++ .+|.|+|+|+
T Consensus 5 ~~~L~~~~~~~p--~~~l~~~~~~i~~~~~~~~~~~~IGR~------~~~di~l~~~~~vSr~Ha~i~~~~~g~~~l~Dl 76 (127)
T 1g6g_A 5 VCRVICTTGQIP--IRDLSADISQVLKEKRSIKKVWTFGRN------PACDYHLGNISRLSNKHFQILLGEDGNLLLNDI 76 (127)
T ss_dssp EEEEEESSSSSC--CEEEEECHHHHHHCCSSCCEEEEEESS------TTSSEECCSCTTSCSSCEEEEECTTSCEEEEEC
T ss_pred EEEEEECCCCCC--ceEeeccccceeeeeecCCCCEEECCC------CCCCEEeCCCCCCChhHeEEEECCCCcEEEEEC
Confidence 355666655544 444444421 112337999999 6799999997 69999999999 5899999999
Q ss_pred CCCCceeeCCEecCCCCCCCCCeecCCCCEEEEcCce
Q psy588 76 KSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDV 112 (903)
Q Consensus 76 GSTNGTFVNGqRLs~g~~eSePveL~dGDIIrLG~tV 112 (903)
|+|||||||+++.++ .+++|++||+|.||.+.
T Consensus 77 -S~NGT~vNg~~l~~~----~~~~L~~Gd~I~lG~~~ 108 (127)
T 1g6g_A 77 -STNGTWLNGQKVEKN----SNQLLSQGDEITVGVGV 108 (127)
T ss_dssp -CSSCCEETTEECCTT----CCEECCTTCEEEECTTS
T ss_pred -CcCCeEECCEEcCCC----CeEEcCCCCEEEECCCc
Confidence 999999999999873 57999999999999975
No 23
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.6e-15 Score=146.38 Aligned_cols=87 Identities=25% Similarity=0.313 Sum_probs=71.0
Q ss_pred ceEEEEcccCCCCCeEEEcCCCCc---------CCCCCCceeeCCccccccceEEEEECCE----EEEEECCCCCceeeC
Q psy588 18 ERKLILENTANKNAAVKIGRCIAR---------AKVAPSNGIFDCKVLSRNHALIWYYNGK----FYLQDTKSSNGTFVN 84 (903)
Q Consensus 18 ~RtL~L~sGp~~G~~VtIGRssdr---------grps~cDIVLdDpvVSR~HAeI~~edG~----~yIrDLGSTNGTFVN 84 (903)
.+.+.+.. +..++|||..+. .....||++++++.|||+||.|.+.++. |+|+|++|+||||||
T Consensus 47 ~~~~~L~~----~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT~VN 122 (158)
T 3els_A 47 WKRYDLNG----RSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLN 122 (158)
T ss_dssp SEEEECSS----CSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCCEET
T ss_pred ceEEEecC----CCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCccEEC
Confidence 34556654 457999998421 1124699999999999999999997665 999999999999999
Q ss_pred CEecCCCCCCCCCeecCCCCEEEEcCce
Q psy588 85 NQRLSKTNEESAPHELCSGDVVQFGVDV 112 (903)
Q Consensus 85 GqRLs~g~~eSePveL~dGDIIrLG~tV 112 (903)
|+++.++ .+++|++||+|+||...
T Consensus 123 g~ri~~~----~~~~L~~GD~I~~G~s~ 146 (158)
T 3els_A 123 NVVIPGA----RYIELRSGDVLTLSEFE 146 (158)
T ss_dssp TEECCTT----CCEECCTTEEEESSSCG
T ss_pred CEEcCCC----ceEEcCCCCEEEECCCC
Confidence 9999883 47999999999999754
No 24
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.58 E-value=2.3e-15 Score=144.98 Aligned_cols=91 Identities=26% Similarity=0.368 Sum_probs=75.5
Q ss_pred CCCCCCcceEEEEcccC------CCCCeEEEcCCCCcCCCCCCceeeCCc-cccccceEEEE-ECCEEEEEECCCCCcee
Q psy588 11 PNSHPFAERKLILENTA------NKNAAVKIGRCIARAKVAPSNGIFDCK-VLSRNHALIWY-YNGKFYLQDTKSSNGTF 82 (903)
Q Consensus 11 p~ShPf~~RtL~L~sGp------~~G~~VtIGRssdrgrps~cDIVLdDp-vVSR~HAeI~~-edG~~yIrDLGSTNGTF 82 (903)
...+|..++.+.+..++ .....++|||+ ..|+++++++ .|||.||.|++ .+|.|+|+|+ |+||||
T Consensus 38 v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~------~~~di~l~d~~~vSr~Ha~I~~~~~g~~~l~Dl-S~NGT~ 110 (164)
T 1g3g_A 38 CTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRN------PACDYHLGNISRLSNKHFQILLGEDGNLLLNDI-STNGTW 110 (164)
T ss_dssp CSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESS------SSSSEECCCCTTTTSSCEEEEECSTTCEEEEEC-CSSCEE
T ss_pred EecCCCCCeEEEeccccccccccccCCcEEECCC------CCCCEEeCCcCCcChhHEEEEECCCCCEEEEEC-CCCCeE
Confidence 34567777888777421 11236899999 6799999997 69999999999 5999999999 999999
Q ss_pred eCCEecCCCCCCCCCeecCCCCEEEEcCce
Q psy588 83 VNNQRLSKTNEESAPHELCSGDVVQFGVDV 112 (903)
Q Consensus 83 VNGqRLs~g~~eSePveL~dGDIIrLG~tV 112 (903)
|||.++.++ .|++|.+||+|.||.+.
T Consensus 111 vNg~~i~~~----~~~~L~~GD~I~iG~~~ 136 (164)
T 1g3g_A 111 LNGQKVEKN----SNQLLSQGDEITVGVGV 136 (164)
T ss_dssp ETTEEECTT----EEEECCTTCEEEESCSS
T ss_pred ECCEEcCCC----CceEcCCCCEEEECCCC
Confidence 999999873 47999999999999963
No 25
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.56 E-value=4.6e-15 Score=157.45 Aligned_cols=82 Identities=28% Similarity=0.406 Sum_probs=73.7
Q ss_pred ceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCceeeCCEecCCCCCCCCC
Q psy588 18 ERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAP 97 (903)
Q Consensus 18 ~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGTFVNGqRLs~g~~eSeP 97 (903)
++.+.+.. ..++|||+ +.|+++++++.|||+||.|.+.++.|+|+|++|+|||||||+++.. +
T Consensus 298 g~~~~l~~-----~~~~iGR~------~~~di~l~~~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~vng~~i~~------~ 360 (388)
T 2ff4_A 298 GRGYPLQA-----AATRIGRL------HDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRS------A 360 (388)
T ss_dssp CCEEECCS-----SEEEEESS------TTSSEECCCTTSCTTCEEEEECSSCEEEEECSCSSCCEETTEECSS------E
T ss_pred CcEEEECC-----CCEEEecC------CCCeEEECCCccChhHeEEEEECCEEEEEECCCCCCeEECCEECCC------c
Confidence 35566665 38999999 6899999999999999999999999999999999999999999954 5
Q ss_pred eecCCCCEEEEcCceeeec
Q psy588 98 HELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 98 veL~dGDIIrLG~tVLr~~ 116 (903)
++|++||+|+||.+.+.+.
T Consensus 361 ~~L~~gd~i~~G~~~~~~~ 379 (388)
T 2ff4_A 361 VTLNDGDHIRICDHEFTFQ 379 (388)
T ss_dssp EEECTTCEEEETTEEEEEE
T ss_pred eECCCCCEEEECCEEEEEE
Confidence 8999999999999988876
No 26
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.54 E-value=7e-15 Score=148.21 Aligned_cols=86 Identities=27% Similarity=0.335 Sum_probs=69.2
Q ss_pred eEEEEcccCCCCCeEEEcCCCCc---------CCCCCCceeeCCccccccceEEEEECC----EEEEEECCCCCceeeCC
Q psy588 19 RKLILENTANKNAAVKIGRCIAR---------AKVAPSNGIFDCKVLSRNHALIWYYNG----KFYLQDTKSSNGTFVNN 85 (903)
Q Consensus 19 RtL~L~sGp~~G~~VtIGRssdr---------grps~cDIVLdDpvVSR~HAeI~~edG----~~yIrDLGSTNGTFVNG 85 (903)
..+.+.. +..++|||+... .....|+++++++.|||+||.|.+..+ .|+|+|++|+|||||||
T Consensus 95 ~~~~L~~----~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGTfVNG 170 (205)
T 3elv_A 95 KRYDLNG----RSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNN 170 (205)
T ss_dssp EEEECSS----CSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCCEETT
T ss_pred eEEEecC----CCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCCeECC
Confidence 3455543 458999998421 113469999999999999999998532 49999999999999999
Q ss_pred EecCCCCCCCCCeecCCCCEEEEcCce
Q psy588 86 QRLSKTNEESAPHELCSGDVVQFGVDV 112 (903)
Q Consensus 86 qRLs~g~~eSePveL~dGDIIrLG~tV 112 (903)
++|.+. .+++|++||+|+||...
T Consensus 171 ~rI~~~----~~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 171 VVIPGA----RYIELRSGDVLTLSEFE 193 (205)
T ss_dssp EECCBT----SCEECCTTCEEESSSSG
T ss_pred EECCCC----ceeECCCCCEEEECCCC
Confidence 999873 46899999999999754
No 27
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.48 E-value=1.4e-13 Score=131.70 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=65.3
Q ss_pred eEEEcCCCCcCCCCCCceeeCCccccccceEEEEECC----EEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEE
Q psy588 32 AVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNG----KFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQ 107 (903)
Q Consensus 32 ~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG----~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIr 107 (903)
.++|||.. ....|||+++++.|||+||.|.+.++ .|++.|++|+|||||||.+|.. |+.|++||+|.
T Consensus 62 ~t~IGR~~---~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VNG~~i~~------~~~L~~GD~I~ 132 (154)
T 4ejq_A 62 ITRVGRED---GERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVTE------PSILRSGNRII 132 (154)
T ss_dssp EEEEECSS---CSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEETTEECCS------CEECCTTCEEE
T ss_pred CEEEcCCC---CCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCceEECCEEcCC------ceECCCCCEEE
Confidence 89999972 12479999999999999999999754 5899999999999999999965 68999999999
Q ss_pred EcCc-eeeec
Q psy588 108 FGVD-VIETN 116 (903)
Q Consensus 108 LG~t-VLr~~ 116 (903)
||.+ +|++.
T Consensus 133 ~G~~~~Frf~ 142 (154)
T 4ejq_A 133 MGKSHVFRFN 142 (154)
T ss_dssp ETTTEEEEEE
T ss_pred ECCcEEEEEc
Confidence 9986 45553
No 28
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.43 E-value=5.9e-13 Score=124.46 Aligned_cols=71 Identities=24% Similarity=0.331 Sum_probs=63.8
Q ss_pred eEEEcCCCCcCCCCCCceeeCCccccccceEEEE-ECCEEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEEEcC
Q psy588 32 AVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWY-YNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGV 110 (903)
Q Consensus 32 ~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~-edG~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrLG~ 110 (903)
.++|||+ ..|||+++++.|||+||.|.+ .+|.|+|+|++ +|||||||++|.. |++|++||+|.||.
T Consensus 49 ~t~IGR~------~~~DI~L~~~~Vs~~Ha~I~~~~~g~~~l~dl~-~ngt~VNG~~V~~------~~~L~~GD~I~lG~ 115 (124)
T 3fm8_A 49 HTLIGSA------NSQDIQLCGMGILPEHCIIDITSEGQVMLTPQK-NTRTFVNGSSVSS------PIQLHHGDRILWGN 115 (124)
T ss_dssp EEEEESS------TTCSEECCSTTCCSSCEEEEECTTSCEEEEECT-TCCEEETTEECCS------CEEECTTCEEEETT
T ss_pred CeEECCC------CCCCEEECCCCeecceEEEEECCCCeEEEEECC-CCCEEECCEEcCC------cEECCCCCEEEECC
Confidence 4899998 679999999999999999999 58899999995 7999999999975 68999999999996
Q ss_pred c-eeee
Q psy588 111 D-VIET 115 (903)
Q Consensus 111 t-VLr~ 115 (903)
. .+++
T Consensus 116 ~~~FrF 121 (124)
T 3fm8_A 116 NHFFRL 121 (124)
T ss_dssp TEEEEE
T ss_pred CeEEEE
Confidence 4 5555
No 29
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.32 E-value=3.3e-12 Score=136.06 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=73.5
Q ss_pred eEEEecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEE-----------CCEEEEE
Q psy588 5 AILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYY-----------NGKFYLQ 73 (903)
Q Consensus 5 aVLt~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~e-----------dG~~yIr 73 (903)
|+|.. .++.+.++.+.+..| .++|||.... ..+.+.++++.|||+||+|.+. ...++|+
T Consensus 2 WiL~~--~~d~~~Gkr~~L~pg-----~YlIGR~~~~---~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~ 71 (325)
T 3huf_A 2 WIIEA--EGDILKGKSRILFPG-----TYIVGRNVSD---DSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVK 71 (325)
T ss_dssp EEEEE--STTTTTTCCEEECSE-----EEEEESSCCC---BTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEE
T ss_pred cEEec--cCccCCCeEEEecCC-----eEEECCCCCc---cCceeecCCCCccccceEEEEecccccccccCCcceEEEE
Confidence 55554 455677888888875 5999998210 1123588999999999999985 2379999
Q ss_pred ECCCCCceeeCCEecCCCCCCCCCeec-CCCCEEEEcCceeeec
Q psy588 74 DTKSSNGTFVNNQRLSKTNEESAPHEL-CSGDVVQFGVDVIETN 116 (903)
Q Consensus 74 DLGSTNGTFVNGqRLs~g~~eSePveL-~dGDIIrLG~tVLr~~ 116 (903)
|++|+|||||||+++.+. .+.| .+||.|+||.....+.
T Consensus 72 DLgSknGTfVNGerI~~~-----~~~L~~dgd~I~fG~~~~~fR 110 (325)
T 3huf_A 72 DLDTKFGTKVNEKVVGQN-----GDSYKEKDLKIQLGKCPFTIN 110 (325)
T ss_dssp ECSCSSCEEETTEECCTT-----CEEECSSEEEEEETTCSSCEE
T ss_pred ECCCCCCEEECCEECCCc-----eeeecCCCCEEEecCCcceEE
Confidence 999999999999999752 2455 5799999998655443
No 30
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=99.12 E-value=1.7e-10 Score=108.91 Aligned_cols=89 Identities=12% Similarity=0.109 Sum_probs=80.1
Q ss_pred ecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCC-CCceeeCCccccccceEEEEECCEEEEEECCCCCceeeCCEe
Q psy588 9 CRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVA-PSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQR 87 (903)
Q Consensus 9 ~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps-~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGTFVNGqR 87 (903)
++..++|..++.+.+..| .++||++ + .||+++.|+.|||+||.|.+.+++|+|+ +|+||||+||++
T Consensus 7 lrvlsG~~~G~~l~L~~~-----~~~IGs~------~~~~DLvL~D~~Vs~~H~~L~~~~~g~~L~--~s~ngt~vdG~~ 73 (123)
T 4a0e_A 7 CRFYQGKHRGVEVELPHG-----RCVFGSD------PLQSDIVLSDSEIAPVHLVLMVDEEGIRLT--DSAEPLLQEGLP 73 (123)
T ss_dssp EEECSGGGTTCEEEECSE-----EEEEESC------TTTCSEECCCTTSCSSCEEEEEETTEEEEE--EESSCCEETTEE
T ss_pred EEEecCCCCCcEEEcCCC-----cEEECCC------CCCCCEEEeCCCccceeEEEEECCCeEEEE--eccCCEEECCEE
Confidence 455678888889999875 8999998 6 8999999999999999999999999998 699999999999
Q ss_pred cCCCCCCCCCeecCCCCEEEEcCceeeec
Q psy588 88 LSKTNEESAPHELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 88 Ls~g~~eSePveL~dGDIIrLG~tVLr~~ 116 (903)
+..+ ..|.+|+.+.+|...+.+.
T Consensus 74 v~~~------~~L~~g~~l~lG~~~l~~~ 96 (123)
T 4a0e_A 74 VPLG------TLLRAGSCLEVGFLLWTFV 96 (123)
T ss_dssp CCTT------CBCCTTSCEEETTEEEEEE
T ss_pred cccc------cccCCCCEEEEccEEEEEE
Confidence 8763 4899999999999999875
No 31
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.08 E-value=1.4e-10 Score=122.23 Aligned_cols=90 Identities=26% Similarity=0.278 Sum_probs=73.3
Q ss_pred CceEEEecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccc---------cccceEEEEE--CC---
Q psy588 3 GTAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVL---------SRNHALIWYY--NG--- 68 (903)
Q Consensus 3 A~aVLt~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvV---------SR~HAeI~~e--dG--- 68 (903)
+|+.|++...+.+ .+.+.. ..++|||+ ..|+++++++.| ||+||.|++. .+
T Consensus 9 ~~g~l~~~~~~~~----~~~l~~-----~~~~iGR~------~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~ 73 (419)
T 3i6u_A 9 PWARLWALQDGFA----NLECVN-----DNYWFGRD------KSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSY 73 (419)
T ss_dssp CSEEEEECSSSSC----CEEECS-----SEEEEESS------TTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEE
T ss_pred CceEeeecCCCCC----ceEecC-----CCEEecCC------CccCEEECCcccccccccccccccceEEEEEcCCCCce
Confidence 6888877766555 456655 37999999 789999999865 9999999873 22
Q ss_pred EEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEEEcCce
Q psy588 69 KFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDV 112 (903)
Q Consensus 69 ~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrLG~tV 112 (903)
.|+|+| +|+|||||||.++.++ .+.++.+||.|.+|.+.
T Consensus 74 ~~~i~D-~S~nGt~vn~~~~~~~----~~~~l~~~d~i~~~~~~ 112 (419)
T 3i6u_A 74 IAYIED-HSGNGTFVNTELVGKG----KRRPLNNNSEIALSLSR 112 (419)
T ss_dssp CCEEEE-CCSSCEEETTEECCTT----CEEECCTTEEEEESSTT
T ss_pred EEEEEE-CCcCCceECcccccCC----CcccCCCCCEeeeeccc
Confidence 299999 7999999999999874 35789999999999764
No 32
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=99.02 E-value=3e-10 Score=104.32 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=57.9
Q ss_pred CCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCce-eeCCEecCCCCCCCCCeecCCCCE---
Q psy588 30 NAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGT-FVNNQRLSKTNEESAPHELCSGDV--- 105 (903)
Q Consensus 30 G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGT-FVNGqRLs~g~~eSePveL~dGDI--- 105 (903)
+..++|||. +.+++.++++.|||.||.|.+.+++.|+. . |+||| ||||+|+ . |+.|.+||.
T Consensus 20 ~~~~rIGR~------~~~~l~LddpsVs~~HAti~~~~~G~~~l-~-S~nGtVFVNGqrv-~------~~~I~~gDtI~g 84 (102)
T 3uv0_A 20 DTIYRIGRQ------KGLEISIADESMELAHATACILRRGVVRL-A-ALVGKIFVNDQEE-T------VVDIGMENAVAG 84 (102)
T ss_dssp TCCEEEESS------TTSTEECCCTTSCTTCEEEEEEETTEEEE-E-ESSSCEEETTEEE-S------EEEECGGGCBTT
T ss_pred CcEEEEcCC------CCCcEEECCcccccceEEEEecCCceEEE-E-eccCcEEECCEEe-e------eEEccCCccccc
Confidence 568999999 78999999999999999999966555553 3 99995 9999999 4 589999999
Q ss_pred ---EEEcCcee
Q psy588 106 ---VQFGVDVI 113 (903)
Q Consensus 106 ---IrLG~tVL 113 (903)
++||...-
T Consensus 85 ~v~lrFGnvea 95 (102)
T 3uv0_A 85 KVKLRFGNVEA 95 (102)
T ss_dssp EEEEEETTEEE
T ss_pred EEEEEecCEEE
Confidence 67776543
No 33
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=98.97 E-value=3.4e-09 Score=96.93 Aligned_cols=95 Identities=20% Similarity=0.201 Sum_probs=76.1
Q ss_pred CCCceEEEecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEE--CCEEEEEECCCC
Q psy588 1 MAGTAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYY--NGKFYLQDTKSS 78 (903)
Q Consensus 1 MtA~aVLt~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~e--dG~~yIrDLGST 78 (903)
|...+.|.+...++| .+.++. |..++|||+ +.+ .+.|+.+||+|+.+... .|.+.|+|+| +
T Consensus 1 ~~~~c~L~~~~~~~~----~I~L~~----g~~v~iGR~------p~t--~I~DkrcSR~h~~L~~~~~~g~v~vk~lg-~ 63 (102)
T 3kt9_A 1 MMRVCWLVRQDSRHQ----RIRLPH----LEAVVIGRG------PET--KITDKKCSRQQVQLKAECNKGYVKVKQVG-V 63 (102)
T ss_dssp CCCEEEEEETTSTTC----EEECCB----TCEEEECSS------TTT--CCCCTTSCSSCEEEEEETTTTEEEEEECS-S
T ss_pred CcceEEEEecCCCCC----cEEcCC----CCcEEeccC------Ccc--ccccCcccCcceEEEEecCCCEEEEEECc-C
Confidence 566677777776655 477776 467889999 444 44689999999999997 5688999995 8
Q ss_pred CceeeCCEecCCCCCCCCCeecCCCCEEEEcCceeeec
Q psy588 79 NGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 79 NGTFVNGqRLs~g~~eSePveL~dGDIIrLG~tVLr~~ 116 (903)
|||||||.++.++ ..+.|++||+|.+-....-+.
T Consensus 64 Np~~vng~~l~k~----~~~~L~~GD~l~Ll~~~~~~~ 97 (102)
T 3kt9_A 64 NPTSIDSVVIGKD----QEVKLQPGQVLHMVNELYPYI 97 (102)
T ss_dssp SCCEETTEECCBT----CEEEECTTCCEEEETTEEEEE
T ss_pred CCCeECCEEcCCC----CeEEeCCCCEEEEccCCceEE
Confidence 9999999999985 459999999999987666443
No 34
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=98.77 E-value=2.9e-08 Score=98.16 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=61.9
Q ss_pred eEEEcCCCCcCCCCCCceeeCCccccccceEEEEEC-----CEEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEE
Q psy588 32 AVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYN-----GKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVV 106 (903)
Q Consensus 32 ~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~ed-----G~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDII 106 (903)
.++|||..+ ...+||++..+.|++.||.|...+ +.++|.+. +.++|||||.+|.. |+.|++||+|
T Consensus 92 ~t~VGr~~~---~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~-~~a~t~VNG~~I~~------~~~L~~GDrI 161 (184)
T 4egx_A 92 ITRVGREDG---ERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPC-EGADTYVNGKKVTE------PSILRSGNRI 161 (184)
T ss_dssp EEEEECSSS---SSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEEC-TTCCEEETTEECCS------CEECCTTCEE
T ss_pred cCcCCCCCc---CCCCeEEECccccccccEEEEEcCCCCceEEEEEeeC-CCCeEEEcCEEccc------cEEcCCCCEE
Confidence 789999721 246889999999999999999953 45788887 56889999999976 7999999999
Q ss_pred EEcCc-eeeec
Q psy588 107 QFGVD-VIETN 116 (903)
Q Consensus 107 rLG~t-VLr~~ 116 (903)
.||.. +|+|.
T Consensus 162 ~lG~~h~Frfn 172 (184)
T 4egx_A 162 IMGKSHVFRFN 172 (184)
T ss_dssp EETTTEEEEEE
T ss_pred EECCCCEEEEC
Confidence 99987 45553
No 35
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=98.66 E-value=2.2e-08 Score=101.94 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=61.9
Q ss_pred CeEEEcCCCCcCCCCCCceeeCCccccccceEEEEE--C--CEEEEEECCCCCce-eeCCEecCCCCCCCCCeecC-CCC
Q psy588 31 AAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYY--N--GKFYLQDTKSSNGT-FVNNQRLSKTNEESAPHELC-SGD 104 (903)
Q Consensus 31 ~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~e--d--G~~yIrDLGSTNGT-FVNGqRLs~g~~eSePveL~-dGD 104 (903)
..++|||+ +.|+++++++ + ||.+.+. + +.|+|+|++|+||| ||||+++.. +..|+ .||
T Consensus 92 ~~itIG~~------~~~dI~l~~~-~---~~~~~~~~~~~~~~~~l~~l~s~ngtvyvNg~~i~~------~~~L~~~GD 155 (238)
T 1wv3_A 92 DTMTIGPN------AYDDMVIQSL-M---NAIIIKDFQSIQESQYVRIVHDKNTDVYINYELQEQ------LTNKAYIGD 155 (238)
T ss_dssp SEEEEESS------TTSSEECTTC-S---SCEEEECGGGHHHHCEEEEECCTTCCEEETTEECCS------SEEEEETTC
T ss_pred ceEEEeCC------CCCeEEeCCC-e---eEEEEecccCcCCcEEEEEccCCCCCEEECCEEecc------ceeccCCcC
Confidence 38999998 7999999888 3 6877777 3 58999999999997 999999976 57899 999
Q ss_pred EEEEcCceeeecc
Q psy588 105 VVQFGVDVIETNR 117 (903)
Q Consensus 105 IIrLG~tVLr~~~ 117 (903)
.|.||+..+.+..
T Consensus 156 ~I~ig~~~~~~~~ 168 (238)
T 1wv3_A 156 HIYVEGIWLEVQA 168 (238)
T ss_dssp EEEETTEEEEECS
T ss_pred EEEECCEEEEEEC
Confidence 9999999998864
No 36
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.51 E-value=2.6e-07 Score=85.84 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=65.2
Q ss_pred EEEecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEE--ECCEEEEEECCCCCceee
Q psy588 6 ILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWY--YNGKFYLQDTKSSNGTFV 83 (903)
Q Consensus 6 VLt~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~--edG~~yIrDLGSTNGTFV 83 (903)
.|.+...++| .+.++. .+..+.|||+ +. ..+.|+.+||+|+.+.. .++.+.|+|+ ++|++++
T Consensus 11 ~L~~~~~~~~----~I~Lp~---~~g~~viGR~------p~--t~I~DkrcSR~hv~L~ad~~~~~v~vk~l-G~Np~~v 74 (110)
T 2brf_A 11 WLESPPGEAP----PIFLPS---DGQALVLGRG------PL--TQVTDRKCSRTQVELVADPETRTVAVKQL-GVNPSTT 74 (110)
T ss_dssp EEECSTTSSC----CEECCS---TTCCEEECSB------TT--TTBCCTTSCSSCEEEEEETTTTEEEEEEC-SSSCCEE
T ss_pred EEEeCCCCCC----cEEecc---CCCCEEEcCC------CC--cccccccceeeeEEEEEecCCCEEEEEEc-ccCCcEE
Confidence 3444444444 577741 0128999998 32 34678999999999998 4678999999 5799999
Q ss_pred CCEecCCCCCCCCCeecCCCCEEEE--cCceee
Q psy588 84 NNQRLSKTNEESAPHELCSGDVVQF--GVDVIE 114 (903)
Q Consensus 84 NGqRLs~g~~eSePveL~dGDIIrL--G~tVLr 114 (903)
||.++.++ ..+.|++||+|.+ |...++
T Consensus 75 ng~~l~k~----~~~~L~~GD~leLl~g~y~~~ 103 (110)
T 2brf_A 75 GTQELKPG----LEGSLGVGDTLYLVNGLHPLT 103 (110)
T ss_dssp C-CBCCTT----CEEEEETTCEEEEETTEEEEE
T ss_pred CCEEcCCC----CEEEecCCCEEEEccCCeEEE
Confidence 99999985 4699999999997 444444
No 37
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.29 E-value=2.1e-06 Score=83.08 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=67.4
Q ss_pred eEEEecCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEE--CCEEEEEECCCCCcee
Q psy588 5 AILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYY--NGKFYLQDTKSSNGTF 82 (903)
Q Consensus 5 aVLt~~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~e--dG~~yIrDLGSTNGTF 82 (903)
+.|++...++| .|.|.. .+..+.|||+ + ...+.|+.+||+|+.|.++ ++.+.|+++ ++|+|+
T Consensus 10 c~L~p~d~~~~----~I~Lp~---~~g~vvIGRg------P--et~ItDkRcSR~qv~L~ad~~~g~V~Vk~l-G~NP~~ 73 (143)
T 1yj5_C 10 LWLQSPTGGPP----PIFLPS---DGQALVLGRG------P--LTQVTDRKCSRNQVELIADPESRTVAVKQL-GVNPST 73 (143)
T ss_dssp EEEECCTTSCC----CEECCT---TTCEEEECSB------T--TTTBCCSSSCSSCEEEEEETTTTEEEEEEC-SSSCCE
T ss_pred EEEEecCCCCC----cEEecc---CCCCEEEcCC------C--ccccccccccceeEEEEEecCCCeEEEEEc-ccCCcE
Confidence 34555555444 467741 0138999998 3 2357889999999999984 578889999 469999
Q ss_pred eCCEecCCCCCCCCCeecCCCCEEEE--cCceeee
Q psy588 83 VNNQRLSKTNEESAPHELCSGDVVQF--GVDVIET 115 (903)
Q Consensus 83 VNGqRLs~g~~eSePveL~dGDIIrL--G~tVLr~ 115 (903)
|||.++.++ ..+.|.+||+|.| |...+++
T Consensus 74 vng~~L~k~----~~~~L~~GD~LeLl~g~y~f~V 104 (143)
T 1yj5_C 74 VGVHELKPG----LSGSLSLGDVLYLVNGLYPLTL 104 (143)
T ss_dssp ETTEECCTT----CEEEECTTCEEESSSSCSEEEE
T ss_pred ECCEEecCC----CEEEecCCCEEEEecCCceEEE
Confidence 999999985 4599999999985 4445443
No 38
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.17 E-value=9.7e-07 Score=83.07 Aligned_cols=70 Identities=21% Similarity=0.198 Sum_probs=57.3
Q ss_pred eEEEcCCCCcCCCCCCceeeCCccccccceEEEEE--CCEEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEEE-
Q psy588 32 AVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYY--NGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQF- 108 (903)
Q Consensus 32 ~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~e--dG~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrL- 108 (903)
.+.|||+ + ...+.|+.+||+|+.+.++ ++.+.|++++ +|+|+|||.++.++ ..+.|++||+|.+
T Consensus 37 ~~viGRg------p--~t~I~DkrcSR~qv~L~ad~~~~~v~vk~lG-~NP~~vng~~l~k~----~~~~L~~GD~l~Ll 103 (119)
T 1ujx_A 37 ALVLGRG------P--LTQVTDRKCSRNQVELIADPESRTVAVKQLG-VNPSTVGVQELKPG----LSGSLSLGDVLYLV 103 (119)
T ss_dssp CEEESBB------T--TTTBCCTTSCTTSEEEEEETTTTEEEEEECS-SSCCBSSSSBCCTT----CEEEEETTCCCBCB
T ss_pred CEEEcCC------C--CcccccccccceeEEEEEecCCCEEEEEEcc-cCCcEECCEEecCC----CEEEecCCCEEEEe
Confidence 8999998 3 2356889999999999984 6789999995 69999999999984 4699999999974
Q ss_pred -cCceee
Q psy588 109 -GVDVIE 114 (903)
Q Consensus 109 -G~tVLr 114 (903)
|...++
T Consensus 104 ~g~y~~~ 110 (119)
T 1ujx_A 104 NGLYPLT 110 (119)
T ss_dssp TTBSCCE
T ss_pred cCCeEEE
Confidence 444443
No 39
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.65 E-value=0.24 Score=60.39 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 250 MKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 250 LrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
+.++-+++.++..+++...+.+..++.++..+....+.++.++.++..+..+
T Consensus 887 l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 887 HTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555555555555555555544443
No 40
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.67 E-value=0.55 Score=57.27 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=2.6
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHH
Q psy588 209 VEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYEN 244 (903)
Q Consensus 209 IE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~ 244 (903)
...||++|..+...+ +...++...|++.+..++.
T Consensus 923 ~~~LE~kl~eLq~rL--~~~e~~n~~L~~~~~~~~~ 956 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKI--DEQNKEYKSLLEKMNNLEI 956 (1080)
T ss_dssp ------------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhH
Confidence 445666666655533 2223344444444444443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.41 E-value=1.4 Score=48.67 Aligned_cols=80 Identities=13% Similarity=0.052 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHHHHHHHHHHHhhhcc
Q psy588 261 MQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQ 340 (903)
Q Consensus 261 ~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqell~~v~~~~~~~~~~ 340 (903)
.++.+.+++.+...+++....++.++.++.+..++..+..++ ++++..+.||.+++-+++..+..+-+.-
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~----------~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 515 KERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNK----------RAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhh----------hhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345555555566556666666666666666666555544443 3345555666666666666666665556
Q ss_pred cccccccccc
Q psy588 341 LDAFTLKDNL 350 (903)
Q Consensus 341 ~~~~~~~~~~ 350 (903)
+++-+++.|.
T Consensus 585 ~~~~~~~~~~ 594 (597)
T 3oja_B 585 PDTRRVSHHH 594 (597)
T ss_dssp ----------
T ss_pred Cccccccccc
Confidence 6666665543
No 42
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.91 E-value=0.91 Score=55.46 Aligned_cols=43 Identities=7% Similarity=0.051 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q psy588 254 LAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEII 296 (903)
Q Consensus 254 LQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~ 296 (903)
..|+.++..++.+++..++.++.++..+.+..+.+++..+++.
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433333333
No 43
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.72 E-value=7.1 Score=36.56 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHHH
Q psy588 248 EVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTL 327 (903)
Q Consensus 248 ESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqell 327 (903)
+...++++||.....+|+.-...+..++.-|..+..+-..+...+.++..+..+....+..+.+ .-..++++-++|.
T Consensus 41 ~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~---~kkkle~e~~~Lk 117 (129)
T 2fxo_A 41 EKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTA---KKRKLEDECSELK 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4477888999999999987777788889888888888878878888877776665554333332 2233445555554
Q ss_pred HHHHHH
Q psy588 328 EKLQYE 333 (903)
Q Consensus 328 ~~v~~~ 333 (903)
+.++-+
T Consensus 118 ~~led~ 123 (129)
T 2fxo_A 118 RDIDDL 123 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 44
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.50 E-value=16 Score=49.74 Aligned_cols=41 Identities=5% Similarity=0.135 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy588 263 KCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQV 303 (903)
Q Consensus 263 KLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqv 303 (903)
+++++|..|..++.+....++.+..++..++++.++|.+..
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~ 2055 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI 2055 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555433
No 45
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.24 E-value=17 Score=36.82 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHHHHHHHHH
Q psy588 254 LAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYE 333 (903)
Q Consensus 254 LQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqell~~v~~~ 333 (903)
..++-....++.++|-..-..|...-+.-..++++..-+..+.++..=..+...+++.++..+.+++.|-.+|-.++.+.
T Consensus 101 ~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk~El~v~ 180 (189)
T 2v71_A 101 RAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVR 180 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555666666666666666555455555566666666677777777775555554
Q ss_pred H
Q psy588 334 T 334 (903)
Q Consensus 334 ~ 334 (903)
+
T Consensus 181 ~ 181 (189)
T 2v71_A 181 E 181 (189)
T ss_dssp -
T ss_pred h
Confidence 4
No 46
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.98 E-value=16 Score=49.66 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q psy588 248 EVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFE 310 (903)
Q Consensus 248 ESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kE 310 (903)
+.|+++-++-..|+.+|.+.+..|...+++++.+++.|+....|-+.+..+...-..++.+.+
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~ 2076 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSI 2076 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666677777777777777777766666655555555444333333333
No 47
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=89.86 E-value=2.5 Score=39.78 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-hhhhhchHHHHHhhhHhHHHHHHHHHHHHHhhh
Q psy588 260 VMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK-NKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQ 338 (903)
Q Consensus 260 A~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~-~~~kES~~~~L~~~~qEKqell~~v~~~~~~~~ 338 (903)
...+|...|.+|..-+.+|..+|+.....+.+++. ..-...|+.- +..+++++..++++..||++|+.++..+|.+.+
T Consensus 29 L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~-I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET-VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34667777888888888888888766665554432 1222223333 455677888999999999999999888877654
No 48
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.33 E-value=8.6 Score=34.90 Aligned_cols=63 Identities=14% Similarity=0.324 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q psy588 225 DDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKK 298 (903)
Q Consensus 225 EDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K 298 (903)
=|.+|+.+..|..++.++...|..+= .++..++......+.|+..|...+..++.+++.+...
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e-----------~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~ 66 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAE-----------ADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999887776543 2333333333344444444444444444444443333
No 49
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.31 E-value=17 Score=36.93 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 227 KLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
.++..+.+|+.+-.-|+...++-=.-+=.+=-.+..+..+++..+..+..|+..||..|...+.++.........
T Consensus 21 ~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~ 95 (189)
T 2v71_A 21 KYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLED 95 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777888777744444444445556666777777777777777776666665554444444333
No 50
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.13 E-value=25 Score=35.89 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=16.1
Q ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 154 LEELYQLNTC---IQEALQRENMLKNKLSKLQHIVID 187 (903)
Q Consensus 154 LKELyQLSqY---LqEALqREqmLEqKLaiLQeIL~~ 187 (903)
++.|++|+.. +..-.++-.-++..+..|+.-+..
T Consensus 7 L~~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~ 43 (256)
T 3na7_A 7 LKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEA 43 (256)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455655544 333334444445555555444443
No 51
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.12 E-value=25 Score=35.89 Aligned_cols=9 Identities=11% Similarity=0.161 Sum_probs=4.4
Q ss_pred hhhhhcccc
Q psy588 366 KEKMTNIKN 374 (903)
Q Consensus 366 ~~k~~~~~~ 374 (903)
+..++.|..
T Consensus 210 pq~~~~i~~ 218 (256)
T 3na7_A 210 DKIYTEVLT 218 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
Confidence 444555543
No 52
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.82 E-value=8.4 Score=38.50 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 263 KCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 263 KLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
...+++.....+..|+.++|..+..+..+...|.++....++.
T Consensus 91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666666666666666666666555543
No 53
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=86.17 E-value=37 Score=39.19 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhhhhHHHHHHH------HHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhHHHHHHHHHHH
Q psy588 226 DKLRDEIKLLHRDKSTYENQL------KEVMKKMLAEKVEVMQKC--------------QDTERKLVNIENECSNLQELL 285 (903)
Q Consensus 226 DklRkeLlqLqeEK~~YE~~A------KESLrKlLQEKlEA~qKL--------------eElERsL~~sE~EC~~LKeq~ 285 (903)
.+...-+..+..-+..|...| .+.|+..++++......+ ++-+...+.+|.|...+++..
T Consensus 431 ~g~~~~~~~~~~~~~~Y~~~~~kg~~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~ 510 (592)
T 1f5n_A 431 GGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQ 510 (592)
T ss_dssp THHHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666677777787755 489999888877544444 222333344555555555555
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q psy588 286 DRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 286 E~Lq~EL~EL~~K~sEqvt~ 305 (903)
..+++-+++-...|.+.+++
T Consensus 511 ~~~~~~~~~~~~~~~e~~~q 530 (592)
T 1f5n_A 511 RKNEQMMEQKERSYQEHLKQ 530 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555556665554
No 54
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=85.03 E-value=3.2 Score=50.78 Aligned_cols=30 Identities=10% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q psy588 268 ERKLVNIENECSNLQELLDRNRDELEEIIK 297 (903)
Q Consensus 268 ERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~ 297 (903)
+..+..++.++..+++.++.++.+++++..
T Consensus 947 ~~e~~~le~el~~L~~eleele~~l~~l~~ 976 (1184)
T 1i84_S 947 QAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976 (1184)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444433333
No 55
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.81 E-value=21 Score=32.15 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy588 225 DDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQ 300 (903)
Q Consensus 225 EDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~s 300 (903)
=|.+|+.+..|..++.+....|..+=.+ +..++......+.|+..|+.....++.++..+...+.
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~-----------~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEAD-----------KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999877777654332 3333333344444444444444444444444444333
No 56
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.43 E-value=9.8 Score=33.09 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 226 DKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 226 DklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
+.+++.+..|..++.++...|..+- .++.+.+..+...+.|+..|+.....++.+++.+..++.+...+
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e-----------~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAE-----------ADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999888766665443 44445555556666666666666666666666665555554443
No 57
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=77.56 E-value=17 Score=33.43 Aligned_cols=77 Identities=17% Similarity=0.174 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-hhhhhchHHHHHhhhHhHHHHHHHHHHHHHhh
Q psy588 260 VMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK-NKEFESTIDQLLNSNQEKSNTLEKLQYETLQA 337 (903)
Q Consensus 260 A~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~-~~~kES~~~~L~~~~qEKqell~~v~~~~~~~ 337 (903)
...+|...|.+|..-...+..+|+.....+..+..+ .-...|+.- +..+++++..++++..||++|+.++.+++-+.
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i-~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~ 84 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETV-PVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 346777788888877777777776555555433222 112223332 34556788899999999999998888887653
No 58
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.28 E-value=33 Score=36.99 Aligned_cols=82 Identities=9% Similarity=0.144 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHhhhhhhchHHHHHhhhH
Q psy588 246 LKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD----QVTKNKEFESTIDQLLNSNQ 321 (903)
Q Consensus 246 AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE----qvt~~~~kES~~~~L~~~~q 321 (903)
++..|.+...++ ++...-..+||.|..++.....++.+......-.=-|.+.... +.++.+++| -++..+|+
T Consensus 382 i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 457 (471)
T 3mq9_A 382 ITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELE---GEITTLNH 457 (471)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 333444443333 4444455566666666666666666544433332222222222 222333333 25566777
Q ss_pred hHHHHHHHHH
Q psy588 322 EKSNTLEKLQ 331 (903)
Q Consensus 322 EKqell~~v~ 331 (903)
+-+++.++|+
T Consensus 458 ~~~~~~~~~~ 467 (471)
T 3mq9_A 458 KLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777754443
No 59
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.10 E-value=17 Score=41.93 Aligned_cols=55 Identities=9% Similarity=0.111 Sum_probs=28.9
Q ss_pred HHHhhHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHHHHHHHHHHHh
Q psy588 270 KLVNIENECS-NLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQ 336 (903)
Q Consensus 270 sL~~sE~EC~-~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqell~~v~~~~~~ 336 (903)
.+.++-.|+. .|+++++.|+.++ ..+++.++.++ ..|+++..++|+| +|-|+.+-
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekV-------dnQlsnIrvLQ---snLedq~~kIQRL--EvDIdiqi 158 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKV-------IEKVQHIQLLQ---KNVRAQLVDMKRL--EVDIDIKI 158 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHH
Confidence 3344444444 4555555554444 34444433333 3677778888888 45555443
No 60
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=73.92 E-value=51 Score=29.77 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy588 245 QLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQV 303 (903)
Q Consensus 245 ~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqv 303 (903)
.+...|+++.+|...+.+.|..+|+--+.+..+...++.....+..+=.+.-..|+...
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~ 66 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFK 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45778888889999999999999999888888888888877777666666666666633
No 61
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=70.04 E-value=36 Score=31.65 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=7.8
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q psy588 286 DRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 286 E~Lq~EL~EL~~K~sEqvt~ 305 (903)
..++.+.+....||.++.+.
T Consensus 44 dn~~~~~edfk~KyE~E~~~ 63 (119)
T 3ol1_A 44 DNLAEDIMRLREKLQEEMLQ 63 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 33333334444444443333
No 62
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=68.71 E-value=76 Score=29.60 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy588 246 LKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQ 302 (903)
Q Consensus 246 AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEq 302 (903)
|.+...++...|.+...++.+++..+..-+.....|......++.+++++.....+.
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777777776666666666666666666666555555543
No 63
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=67.61 E-value=98 Score=30.45 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q psy588 260 VMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFE 310 (903)
Q Consensus 260 A~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kE 310 (903)
|...+..+|+.+..+|+++...|..|..++.+|.+.......-...+..++
T Consensus 96 AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 96 AERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 566777788888888888888898888888888887777666555544443
No 64
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=65.45 E-value=97 Score=29.58 Aligned_cols=81 Identities=15% Similarity=0.246 Sum_probs=46.5
Q ss_pred hHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy588 204 RLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQE 283 (903)
Q Consensus 204 rLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKe 283 (903)
.+.+++..||++++.+ .++++++.+=+...-|+=++.|.++.+.-..+.+....+.- . +
T Consensus 6 ~V~s~l~~LEaeyq~L-------------~~kE~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~-------~-~ 64 (119)
T 2avr_X 6 SLVGELQALDAEYQNL-------------ANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQA-------E-A 64 (119)
T ss_dssp HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-T
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-h
Confidence 4568889999999874 56677776655554455555555554444444433333321 1 1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHh
Q psy588 284 LLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 284 q~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
-..-.+.+..+|..+|.+..++
T Consensus 65 ~~~~yK~eY~~L~KkYk~~~~~ 86 (119)
T 2avr_X 65 NTRFYKSQYQELASKYEDALKK 86 (119)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHH
Confidence 1233456667777777776663
No 65
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=65.20 E-value=54 Score=37.89 Aligned_cols=48 Identities=8% Similarity=0.100 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy588 261 MQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKE 308 (903)
Q Consensus 261 ~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~ 308 (903)
.++++.|++.+.+--.-+.+||..++++..+++.|--..+.|...|+.
T Consensus 116 RRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 116 RSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444444444444444555555555555555555555555555543
No 66
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=64.97 E-value=1.3e+02 Score=33.54 Aligned_cols=19 Identities=32% Similarity=0.467 Sum_probs=10.7
Q ss_pred hhHhhHHHHHHHHHHHHhc
Q psy588 203 DRLLSRVEFLESQLAAYSK 221 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sK 221 (903)
..+..||++|-+.|..+++
T Consensus 63 r~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQK 81 (390)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3455566666666665544
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.77 E-value=1.3e+02 Score=32.43 Aligned_cols=13 Identities=23% Similarity=0.120 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHh
Q psy588 276 NECSNLQELLDRN 288 (903)
Q Consensus 276 ~EC~~LKeq~E~L 288 (903)
.+..+|++..+.+
T Consensus 442 ~~~~~~~~~~~~~ 454 (487)
T 3oja_A 442 HKETQLAEENARL 454 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhh
Confidence 3333333333333
No 68
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=59.86 E-value=50 Score=31.15 Aligned_cols=50 Identities=18% Similarity=0.333 Sum_probs=31.9
Q ss_pred hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLV 272 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~ 272 (903)
+.-+.+|.+|+.|..+|...+.- |. .+=.|+..||-+...+++.+++-+.
T Consensus 58 ~~~lE~I~vLkaQv~IY~~DF~a-----------------ER---adREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 58 KIVMETVPVLKAQADIYKADFQA-----------------ER---HAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH-----------------HH---HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc-----------------ch---hhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 55567899999999998542211 12 2334566777777777776666544
No 69
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=58.11 E-value=1.3e+02 Score=28.73 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy588 153 PLEELYQLNTCIQEALQRENML--KNKLSKLQHIVIDLKKAADVSWKAL 199 (903)
Q Consensus 153 pLKELyQLSqYLqEALqREqmL--EqKLaiLQeIL~~Tk~AAE~sWqaL 199 (903)
+..-|.++..|+.+.+..=... -..++.-.-.+.+....|+.-+++.
T Consensus 26 ~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~ 74 (138)
T 3hnw_A 26 SEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAK 74 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888876643322211 2233333444444444455555443
No 70
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=57.93 E-value=42 Score=29.76 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=41.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhc----hHHHHHhhhHhHHHHHHHHHHHH
Q psy588 266 DTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFES----TIDQLLNSNQEKSNTLEKLQYET 334 (903)
Q Consensus 266 ElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES----~~~~L~~~~qEKqell~~v~~~~ 334 (903)
++.+.+..+..+-..+.-+...++........||.++.+.....|. ++.-+-...--|-+|..+|+.++
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555666666667777777777777777666664 33333344455666755555443
No 71
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=56.61 E-value=33 Score=34.92 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHH
Q psy588 240 STYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELE 293 (903)
Q Consensus 240 ~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~ 293 (903)
.+|..++++-|++....=-...+....+-..|.+.++|...|+++++.++.+..
T Consensus 5 ~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 5 TVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 457777777777666554455555555666666777777777777776666664
No 72
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=56.47 E-value=1.7e+02 Score=29.37 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=12.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q psy588 267 TERKLVNIENECSNLQELLDRNRDELEEII 296 (903)
Q Consensus 267 lERsL~~sE~EC~~LKeq~E~Lq~EL~EL~ 296 (903)
++.....++.|+..|+.+++.-+..+....
T Consensus 60 L~~~k~~Leke~~~LQa~L~qEr~~r~q~s 89 (168)
T 3o0z_A 60 LENSKSQTDKDYYQLQAILEAERRDRGHDS 89 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443333333
No 73
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=54.04 E-value=57 Score=30.67 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q psy588 262 QKCQDTERKLVNIENECSNLQELLDRNRDELEEIIK 297 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~ 297 (903)
.....+|+.+..+..+...++...-.+.+..+.+-.
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 333444444444444444444333333333333333
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.24 E-value=1.3e+02 Score=32.45 Aligned_cols=29 Identities=7% Similarity=0.158 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy588 253 MLAEKVEVMQKCQDTERKLVNIENECSNL 281 (903)
Q Consensus 253 lLQEKlEA~qKLeElERsL~~sE~EC~~L 281 (903)
+-++|.+..+.+...++.....+.++..+
T Consensus 365 l~~~~~~le~~~~~~~~~~~~~~~~~~~~ 393 (487)
T 3oja_A 365 LEQKKKALDEQVSNGRRAHAELDGTLQQA 393 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHh
Confidence 33444444455555555555444444443
No 75
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=52.54 E-value=1.4e+02 Score=27.48 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy588 262 QKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKY 299 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~ 299 (903)
.++.++.+.|...-.|+..++..++.++.+=.++..+.
T Consensus 54 ~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~ 91 (107)
T 2no2_A 54 EVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666665555555555555444
No 76
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=50.78 E-value=91 Score=29.83 Aligned_cols=76 Identities=12% Similarity=0.161 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhchHHHHHhhhHhHHHHHHHHHHHHHhhhccc
Q psy588 262 QKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQL 341 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES~~~~L~~~~qEKqell~~v~~~~~~~~~~~ 341 (903)
++|...+..|..+|.+...-..-...|+..|.+..+.-..++. .+..++..++|+-|+..++ .++++++++.
T Consensus 32 ~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vq------eLqgEI~~Lnq~Lq~a~ae--~erlr~~~~~ 103 (121)
T 3mq7_A 32 QELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVE------ELEGEITTLNHKLQDASAE--VERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH--HHHHHhhchh
Confidence 4555555666655544444444444444444433332211221 2344666667777776433 3455555554
Q ss_pred cccc
Q psy588 342 DAFT 345 (903)
Q Consensus 342 ~~~~ 345 (903)
-..+
T Consensus 104 ~~~r 107 (121)
T 3mq7_A 104 LSVR 107 (121)
T ss_dssp HHHH
T ss_pred hhhH
Confidence 3333
No 77
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=50.75 E-value=95 Score=28.86 Aligned_cols=43 Identities=7% Similarity=0.173 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 263 KCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 263 KLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
.+.++-|.+..++-|+..++.+...|+..+.++...|..++..
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~ 79 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKD 79 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666777777777777777777777776665554
No 78
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=48.57 E-value=50 Score=31.18 Aligned_cols=76 Identities=18% Similarity=0.134 Sum_probs=24.9
Q ss_pred hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQ 282 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LK 282 (903)
..|..++..||++|.-..+ ...++..+..... .-.+.+++..++-..|.+++.+.|+.-..+|+...-||
T Consensus 43 ~ql~~~i~~Le~eL~e~r~---------~~q~a~~e~e~Lr-~e~~~l~~~~~~~~~~q~~~~e~E~kAqa~Eerf~KLK 112 (120)
T 3i00_A 43 LQLKGHVSELEADLAEQQH---------LRQQAADDCEFLR-AELDELRRQREDTEKAQRSLSEIERKAQANEQRYSKLK 112 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH-HHHHHHHTTCC---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999987532 3333333333222 22344666666666777788888888888888777777
Q ss_pred HHHHHh
Q psy588 283 ELLDRN 288 (903)
Q Consensus 283 eq~E~L 288 (903)
+.|..+
T Consensus 113 e~yteL 118 (120)
T 3i00_A 113 EKYSEL 118 (120)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 777654
No 79
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=46.94 E-value=70 Score=33.22 Aligned_cols=55 Identities=20% Similarity=0.441 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 247 KEVMKKMLAEKVEVMQ-KCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 247 KESLrKlLQEKlEA~q-KLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
.+.+++-+..|+.+++ ++..++..|+.+..|....+++++....++.++.+.|+.
T Consensus 162 de~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 162 DSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555566655554 778889999999999999999999999999999988876
No 80
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=46.81 E-value=2.9e+02 Score=30.83 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 264 CQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 264 LeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
+..+|..+.+.+.+...|+.+++.++..+++|..+...+...
T Consensus 93 ~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 93 IIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333455555555566666666665555555554444444433
No 81
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=45.98 E-value=68 Score=28.92 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy588 227 KLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQEL 284 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq 284 (903)
.+|-.+-.|+++|.+||.+.|-+= ..++.+++.|+..+.|...|+.+
T Consensus 30 ~Lr~kv~elEnErlQyEkKLKsTK-----------~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 30 HLKIKVEELENERNQYEWKLKATK-----------AEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHhhHHHHHHHHHH
Confidence 355677788888888887666442 33444555555555555555543
No 82
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.74 E-value=93 Score=29.03 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 264 CQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 264 LeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
+.++-|.+..++-|+..++.+...|+..+.++...|..++..
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~ 81 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ 81 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666666655544
No 83
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=44.52 E-value=1e+02 Score=29.44 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 259 EVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 259 EA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
.+.++...++..+...+.|...+|+.+..++.++.++..+..+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~ 114 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKE 114 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666655555555555544443
No 84
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=44.05 E-value=1.5e+02 Score=25.08 Aligned_cols=60 Identities=10% Similarity=0.197 Sum_probs=37.4
Q ss_pred hhhhHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHhHHHHHHH
Q psy588 236 HRDKSTYENQLKEVM---KKMLAEKVEVMQKCQ-DTERKLVNIENECSNLQELLDRNRDELEEI 295 (903)
Q Consensus 236 qeEK~~YE~~AKESL---rKlLQEKlEA~qKLe-ElERsL~~sE~EC~~LKeq~E~Lq~EL~EL 295 (903)
.+=+..|+..|.-.. ...++.|++.++... .-...+..+..|+..+|.....|+-+++-+
T Consensus 12 ~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 12 RDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344667888775543 445666666554443 223456667777777777777777777654
No 85
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.64 E-value=1.8e+02 Score=32.39 Aligned_cols=18 Identities=6% Similarity=0.117 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy588 171 ENMLKNKLSKLQHIVIDL 188 (903)
Q Consensus 171 EqmLEqKLaiLQeIL~~T 188 (903)
|.-++..|..|+.++...
T Consensus 33 e~~V~~~l~~LE~~l~el 50 (409)
T 1m1j_C 33 RLTTDGELLEIEGLLQQA 50 (409)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhcchhHHHHHHHHHHHH
Confidence 344555666666666543
No 86
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=42.02 E-value=2e+02 Score=25.99 Aligned_cols=20 Identities=10% Similarity=0.320 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHHhHHHH
Q psy588 273 NIENECSNLQELLDRNRDEL 292 (903)
Q Consensus 273 ~sE~EC~~LKeq~E~Lq~EL 292 (903)
..++|...+..+|...+..|
T Consensus 71 e~~dE~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 71 ELDDELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 87
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.68 E-value=60 Score=28.62 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhH
Q psy588 248 EVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNR 289 (903)
Q Consensus 248 ESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq 289 (903)
++|++-.+|=-.-..++.++|..|...+.+...|+.++.+++
T Consensus 26 ~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 26 YALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444556677888888888888888887777654
No 88
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.32 E-value=2.7e+02 Score=27.45 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy588 206 LSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELL 285 (903)
Q Consensus 206 LSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~ 285 (903)
+.+...||-.|.. .|++|..+..--..|+ .+++-++++..++-.....+..+...|..-..-....-+..
T Consensus 12 in~qs~LeD~L~~---------~R~el~~~~~ri~~lE-~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~ 81 (154)
T 2ocy_A 12 VDKQSHLEEQLNK---------SLKTIASQKAAIENYN-QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEA 81 (154)
T ss_dssp HHHHHHHHHHHHH---------HHHHHHHHHHHHHTTH-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHhhccHHHHHHH---------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHh--------hhhhhchHHHHHhhhHhHHHHHHHHH
Q psy588 286 DRNRDELEEIIKKYQDQVTK--------NKEFESTIDQLLNSNQEKSNTLEKLQ 331 (903)
Q Consensus 286 E~Lq~EL~EL~~K~sEqvt~--------~~~kES~~~~L~~~~qEKqell~~v~ 331 (903)
..+..|+++|.+..=++.+. ....|.-.++|...-.|+..+++-+|
T Consensus 82 ~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq 135 (154)
T 2ocy_A 82 DKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLT 135 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 89
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.91 E-value=3.7e+02 Score=28.87 Aligned_cols=9 Identities=11% Similarity=0.014 Sum_probs=3.7
Q ss_pred HHHHHHHhh
Q psy588 298 KYQDQVTKN 306 (903)
Q Consensus 298 K~sEqvt~~ 306 (903)
+..+++.+.
T Consensus 444 ~~~~~~~~~ 452 (471)
T 3mq9_A 444 KVEELEGEI 452 (471)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 90
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=39.68 E-value=27 Score=35.99 Aligned_cols=68 Identities=19% Similarity=0.378 Sum_probs=35.5
Q ss_pred chhhhhhhhccchhhhhccc-------cccCCCchhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhcChhhhHhhhh
Q psy588 391 FDDVHQILTQFDEYFLRFNE-------SESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQ 459 (903)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (903)
.++|...+.+|.+||.+.-+ ....| +.|.-+|.--..+|+.+..++++++.|-.+.+.|+.....+-+
T Consensus 33 ~~~V~~yL~~~PdFf~~~~~Ll~~L~lph~~~-~aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~ 107 (252)
T 3e98_A 33 AEQVAAYLSQHPEFFVEHDELIPELRIPHQPG-DAVSLVERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRR 107 (252)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHhhCHHHHHhCCCCCCCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777766543 12234 6677777778999999999999999999999999987665543
No 91
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=39.51 E-value=68 Score=29.55 Aligned_cols=57 Identities=18% Similarity=0.374 Sum_probs=31.8
Q ss_pred hhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy588 203 DRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECS 279 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~ 279 (903)
...+.++.+|+.|..+|...+.. |.. +=.|+.+||-+...++..+++.+..+..||.
T Consensus 36 ~~~~E~i~vLk~Qv~IY~~DF~a-----------------ERa---dREkl~~eKe~L~~ql~~lq~q~~~L~~~~~ 92 (94)
T 3jsv_C 36 KIVMETVPVLKAQADIYKADFQA-----------------ERH---AREKLVEKKEYLQEQLEQLQREFNKLKVGCH 92 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------------HHH---HHHHHHHTTSHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44557888889998888432211 222 2346667777777777777776666555553
No 92
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=39.25 E-value=2.2e+02 Score=25.73 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHH
Q psy588 254 LAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEI 295 (903)
Q Consensus 254 LQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL 295 (903)
-++...+.+.+..++|.+..+|+++......+...+..+.+.
T Consensus 36 e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 36 EERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566666666666666666666665555555544444
No 93
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=37.51 E-value=2.7e+02 Score=26.28 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=18.3
Q ss_pred HHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 269 RKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 269 RsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
++......+++.|+.+....+..|.+|...|..
T Consensus 38 ~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq 70 (112)
T 1x79_B 38 QSSEDSSHQISALVLRAQASEILLEELQQGLSQ 70 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666666666666666555554
No 94
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=37.01 E-value=2.8e+02 Score=26.36 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=11.3
Q ss_pred HhhHHHHHHHHHHHH
Q psy588 205 LLSRVEFLESQLAAY 219 (903)
Q Consensus 205 LLSRIE~LEnQLq~~ 219 (903)
+.++...||++++.+
T Consensus 7 i~~~l~~Leae~q~L 21 (119)
T 3etw_A 7 LVGELQALDAEYQNL 21 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456778888888874
No 95
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.35 E-value=3.7e+02 Score=30.09 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy588 240 STYENQLKEVMK 251 (903)
Q Consensus 240 ~~YE~~AKESLr 251 (903)
+.|-...++.|+
T Consensus 87 ~~y~~~~~~~lk 98 (390)
T 1deq_A 87 NTLTKNIVELMR 98 (390)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 96
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=36.22 E-value=3.2e+02 Score=26.83 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHH
Q psy588 208 RVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLK 247 (903)
Q Consensus 208 RIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AK 247 (903)
|++.||.||... ..+...+|+.+|.
T Consensus 1 r~~~lE~qlkea---------------ae~ad~KyeEvaR 25 (155)
T 2efr_A 1 RMKQLEDKVEEL---------------LSKNYHLENEVAR 25 (155)
T ss_dssp CHHHHHHHHHHH---------------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---------------HHHhHHHHHHHHH
Confidence 467788888753 3566677776666
No 97
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=34.70 E-value=2.4e+02 Score=25.88 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 248 EVMKKMLAEKVEVMQKCQDTERKLV 272 (903)
Q Consensus 248 ESLrKlLQEKlEA~qKLeElERsL~ 272 (903)
+.|..+.++|.....++..++....
T Consensus 39 ~~L~~i~~~k~~ll~~L~~~~~~R~ 63 (157)
T 2fup_A 39 PVLQQLLGAKQPLMQQLERNGRARA 63 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888887776644
No 98
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=34.42 E-value=5.9e+02 Score=29.37 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 261 MQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 261 ~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
++..++-||++. .+++.+-++.+.+..++.+....
T Consensus 514 ~~~~~~~~~~~~------e~~~ql~~kme~~~~~~~~e~~~ 548 (592)
T 1f5n_A 514 EQMMEQKERSYQ------EHLKQLTEKMENDRVQLLKEQER 548 (592)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555 23344444455555555544443
No 99
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=31.97 E-value=6.4e+02 Score=28.98 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=12.0
Q ss_pred hhHhhHHHHHHHHHHHHhccC
Q psy588 203 DRLLSRVEFLESQLAAYSKSF 223 (903)
Q Consensus 203 DrLLSRIE~LEnQLq~~sKN~ 223 (903)
.-...||+.|-+.|.-++++.
T Consensus 61 rdv~~rI~kLkn~L~~~s~s~ 81 (491)
T 1m1j_A 61 QNYSQRIDNIRQQLADSQNKY 81 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHhhc
Confidence 344556666666666655533
No 100
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=31.66 E-value=3.3e+02 Score=25.52 Aligned_cols=43 Identities=28% Similarity=0.432 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy588 240 STYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQEL 284 (903)
Q Consensus 240 ~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq 284 (903)
..||..--|+|+-| -|-+..|..-++|+.++.++.|-.++|..
T Consensus 17 e~YE~~h~ErL~~m--SKqELIqEYl~LE~~~s~le~e~~rlr~~ 59 (104)
T 3s9g_A 17 ETYERYHTESLQNM--SKQELIKEYLELEKSLSRMEDENNRLRLE 59 (104)
T ss_dssp HHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544444433 13334444556666666666666655543
No 101
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.21 E-value=6.3e+02 Score=28.69 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy588 171 ENMLKNKLSKLQHIVID 187 (903)
Q Consensus 171 EqmLEqKLaiLQeIL~~ 187 (903)
+.-++..|..|.+++..
T Consensus 95 q~~V~~~LqeLe~~l~~ 111 (464)
T 1m1j_B 95 EKTVKPVLRDLKDRVAK 111 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhHhHHHHHHHHHHH
Confidence 34455555555555544
No 102
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.87 E-value=3.1e+02 Score=27.13 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy588 164 IQEALQRENMLKNKLSKLQHIVI 186 (903)
Q Consensus 164 LqEALqREqmLEqKLaiLQeIL~ 186 (903)
+.+.+.....++.++..|+.-..
T Consensus 30 l~~rL~~Rd~~E~~~~~l~~e~~ 52 (152)
T 3a7p_A 30 LIRRLTDRNDKEAHLNELFQDNS 52 (152)
T ss_dssp -----------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHhhc
Confidence 44444445556666655555443
No 103
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=30.77 E-value=1.6e+02 Score=29.68 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy588 256 EKVEVMQKCQDTERKLV 272 (903)
Q Consensus 256 EKlEA~qKLeElERsL~ 272 (903)
+|-.....+.+++..|.
T Consensus 173 ~k~~i~~~l~~~~~~L~ 189 (219)
T 4e81_A 173 DKTAIESALTALETALK 189 (219)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344444555555554
No 104
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.03 E-value=1e+02 Score=30.44 Aligned_cols=21 Identities=10% Similarity=-0.173 Sum_probs=8.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q psy588 284 LLDRNRDELEEIIKKYQDQVT 304 (903)
Q Consensus 284 q~E~Lq~EL~EL~~K~sEqvt 304 (903)
.++.++.|+.-+.-.+.....
T Consensus 97 ~~e~l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 97 NTERLNAALISGTIENNVLQQ 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 105
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.62 E-value=1e+02 Score=33.84 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy588 262 QKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVT 304 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt 304 (903)
.++.+++..+..+++++..|.+..+.++.+++++.+++.....
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 45 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET 45 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777888888888888888888888888776665544
No 106
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=29.23 E-value=3e+02 Score=24.29 Aligned_cols=9 Identities=22% Similarity=0.523 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy588 252 KMLAEKVEV 260 (903)
Q Consensus 252 KlLQEKlEA 260 (903)
++++||...
T Consensus 46 ~l~~ek~~L 54 (89)
T 3bas_A 46 TLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 107
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.85 E-value=26 Score=28.89 Aligned_cols=52 Identities=33% Similarity=0.357 Sum_probs=26.9
Q ss_pred hHHHHhHHHhHhhhcccchhHHhHHHhhccccccchhhHHHhhhhhHhhhhc
Q psy588 611 NDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVIKDY 662 (903)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
++|||-||+|----.-.+.+++.|+..+..-+.+-+.|.++.+.|+--+..|
T Consensus 1 ~~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 1 NSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5789999998753456778888888888777777777777777776554433
No 108
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.30 E-value=3.1e+02 Score=24.20 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy588 252 KMLAEKVEVMQKCQDTERKLVNI 274 (903)
Q Consensus 252 KlLQEKlEA~qKLeElERsL~~s 274 (903)
++.+.+....+++.++++.+...
T Consensus 21 ~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 21 EITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444445555555555443
No 109
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=28.18 E-value=33 Score=29.01 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=24.2
Q ss_pred CceeeCCEecCCCCCCCCCeecCCCCEEEEcCceeee
Q psy588 79 NGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDVIET 115 (903)
Q Consensus 79 NGTFVNGqRLs~g~~eSePveL~dGDIIrLG~tVLr~ 115 (903)
.+.+|||+.+... .+.+.+||.|.+++..+..
T Consensus 46 G~V~VNG~~v~~~-----~~~v~~gd~I~v~~~~~~~ 77 (79)
T 1p9k_A 46 GQVKVDGAVETRK-----RCKIVAGQTVSFAGHSVQV 77 (79)
T ss_dssp HHHEETTBCCCCS-----SCCCCSSEEEEETTEEEEE
T ss_pred CEEEECCEEecCC-----CCCCCCCCEEEECCEEEEE
Confidence 4678999887542 2578999999999876643
No 110
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=27.85 E-value=2e+02 Score=24.78 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy588 262 QKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQD 301 (903)
Q Consensus 262 qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sE 301 (903)
|..-++.++|+.+|..+++|.+....+.+|++-+..+...
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~ 52 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHK 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence 4455688899999999999999999888888888877655
No 111
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=27.49 E-value=3.2e+02 Score=25.25 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhHHHHH
Q psy588 264 CQDTERKLVNIENECS 279 (903)
Q Consensus 264 LeElERsL~~sE~EC~ 279 (903)
..+++..|...+.|-.
T Consensus 27 k~eL~~~l~~l~~e~~ 42 (101)
T 1d7m_A 27 KDQLNSLLASLESEGA 42 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555554444333
No 112
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=27.24 E-value=25 Score=34.02 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhh-hc----hHHHHHhhhHhHHHHH
Q psy588 255 AEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEF-ES----TIDQLLNSNQEKSNTL 327 (903)
Q Consensus 255 QEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~k-ES----~~~~L~~~~qEKqell 327 (903)
-|--++..||...+....+.++.|..+-+.+..++.++.++...|.-++.++... +| ++-+..+..-||.+|.
T Consensus 9 ~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLA 86 (130)
T 3cl3_D 9 GELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLA 86 (130)
T ss_dssp ------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777777777777777777777777777777777666666655553322 23 3333344555777664
No 113
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=26.55 E-value=3e+02 Score=24.96 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy588 245 QLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQEL 284 (903)
Q Consensus 245 ~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq 284 (903)
....+|+++++-=+....|++++-........++..||+.
T Consensus 48 ~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~ 87 (93)
T 3t98_B 48 DLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777776666666555555555543
No 114
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=25.73 E-value=3.8e+02 Score=24.30 Aligned_cols=39 Identities=5% Similarity=-0.041 Sum_probs=22.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy588 232 IKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERK 270 (903)
Q Consensus 232 LlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERs 270 (903)
|..+.+-+..-+..|+..|.++.++.-.+.++|..++.-
T Consensus 10 L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~ 48 (150)
T 3ajw_A 10 LETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDY 48 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555566666666666666666666655553
No 115
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.81 E-value=4.4e+02 Score=24.82 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy588 228 LRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQ 300 (903)
Q Consensus 228 lRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~s 300 (903)
++++|.++-.++...+..++ +-+-+-..+.+.|.....++|....-++.-+..++.+.++-.++..
T Consensus 18 l~~qL~k~~~~r~~Le~~w~-------~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt 83 (112)
T 1x79_B 18 ANDQLEKTMKDKQELEDFIK-------QSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLM 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554422 2233444566667777777777777777666666655555444433
No 116
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=24.49 E-value=8.6e+02 Score=28.04 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhc-hHHHHHhhhHhHHHHH
Q psy588 263 KCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFES-TIDQLLNSNQEKSNTL 327 (903)
Q Consensus 263 KLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~kES-~~~~L~~~~qEKqell 327 (903)
++++.+..-+..+.|-..+|++++..+...+.-.++|...+++.+.... -...+.+-++|+.+..
T Consensus 35 ~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~ 100 (497)
T 3iox_A 35 AVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIK 100 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555556666666666666666666665544222221 2234455555555554
No 117
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.60 E-value=53 Score=37.60 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy588 229 RDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKE 308 (903)
Q Consensus 229 RkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~ 308 (903)
++...+++.++-.-|..+++...+. |-+.+.||.++|.....+..++....+....|.++++.+...-.....+..+
T Consensus 312 ~~~~~~~e~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~ 388 (575)
T 2i1j_A 312 EKLAKQAQREKLQLEIAARERAEKK---QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNE 388 (575)
T ss_dssp HHHHHHHHHTTCCSCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhchHHHHH----hhhHhHHHHHHHHHHHHH
Q psy588 309 FESTIDQLL----NSNQEKSNTLEKLQYETL 335 (903)
Q Consensus 309 kES~~~~L~----~~~qEKqell~~v~~~~~ 335 (903)
.|.+...|+ .+..||+.|..++.--+.
T Consensus 389 ~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 419 (575)
T 2i1j_A 389 LQAMMQRLEETKNMEAAERQKLEDEIRAKQE 419 (575)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 118
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=23.16 E-value=4e+02 Score=23.76 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHH
Q psy588 260 VMQKCQDTERKLVNIENECSNLQELLDRNRDELEE 294 (903)
Q Consensus 260 A~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~E 294 (903)
+...+..+++.+..+++++.....++..++..+.+
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~ 76 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555544444444444443333
No 119
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.12 E-value=1e+02 Score=31.85 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred chhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy588 200 IQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECS 279 (903)
Q Consensus 200 IdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~ 279 (903)
++...+..+++.++.+|.. -...+...-.++...+..|+. ++++++...-..+.+.+.+..+..++.+..
T Consensus 63 ld~~~~~~~l~~~~a~l~~-----~~a~l~~a~~~~~~a~~~~~r-----~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~ 132 (369)
T 4dk0_A 63 IDSTTQINTLNTRKAALAS-----YQAQLVARKTAYDVALSNYQR-----LSKLYGQKATSLDTLNTAKATLNNAKAEMD 132 (369)
T ss_dssp CCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTTTTHHH-----HHHGGGSSCSCGGGHHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH-----HHHHHHcCCcCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHH
Q psy588 280 NLQELLDRNRDELEEIIK 297 (903)
Q Consensus 280 ~LKeq~E~Lq~EL~EL~~ 297 (903)
.++.+++.++.++..+..
T Consensus 133 ~~~~~l~~~~~~l~~a~~ 150 (369)
T 4dk0_A 133 VVQENIKQAEIEVNTAET 150 (369)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
No 120
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=22.97 E-value=5.8e+02 Score=25.60 Aligned_cols=66 Identities=15% Similarity=0.308 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 227 KLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
+-|+++++.-. .|-..||.++|.+=. +|...+..+++.-..+|+++..+. .+++.+..+|-.++..
T Consensus 109 ErRkelvK~~k---~~~E~aKvaiRniRr---da~~~lKk~~K~~~iseD~~k~~e-------~~iQkltd~~i~~id~ 174 (185)
T 1eh1_A 109 ERRKDLVRAVR---QYAEEGRVAIRNIRR---EALDKLKKLAKELHLSEDETKRAE-------AEIQKITDEFIAKADQ 174 (185)
T ss_dssp THHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHTCCHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHhhhcCCCChhHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 44667666554 456688999998866 455555556777777888877666 7788888888876654
No 121
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=22.30 E-value=6.1e+02 Score=27.90 Aligned_cols=94 Identities=13% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q psy588 227 KLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVM--------QKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKK 298 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~--------qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K 298 (903)
.+.+...+|..-|.+|+...++ .+..+.+.... ..++.++..+..+..++..-+..|...=..+......
T Consensus 144 ~l~~~~~~l~KaKk~Y~~~cke--~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~ 221 (486)
T 3haj_A 144 PWAKKLKEVEAAKKAHHAACKE--EKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQ 221 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh-hhhhhchHHHHHhhhHh
Q psy588 299 YQDQVTK-NKEFESTIDQLLNSNQE 322 (903)
Q Consensus 299 ~sEqvt~-~~~kES~~~~L~~~~qE 322 (903)
|.+.... |+.++.+.+++.....+
T Consensus 222 y~~~~~~~~~~lQ~lEeeRi~~lK~ 246 (486)
T 3haj_A 222 YMENMEQVFEQCQQFEEKRLRFFRE 246 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 122
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=21.94 E-value=6.3e+02 Score=28.81 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy588 273 NIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKE 308 (903)
Q Consensus 273 ~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~ 308 (903)
+-+.-+..|+..++.+...++.|..+...+...|++
T Consensus 160 ~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~c~~ 195 (461)
T 3ghg_B 160 NIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRT 195 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 334444455556666666666666666666655543
No 123
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.81 E-value=9.1e+02 Score=27.39 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=6.9
Q ss_pred HhhHHHHHHHHHHHH
Q psy588 205 LLSRVEFLESQLAAY 219 (903)
Q Consensus 205 LLSRIE~LEnQLq~~ 219 (903)
+...++.||..|..+
T Consensus 98 V~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHH
Confidence 334444455555444
No 124
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.37 E-value=3e+02 Score=24.50 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy588 258 VEVMQKCQDTERKLVNIENECSNLQELLD 286 (903)
Q Consensus 258 lEA~qKLeElERsL~~sE~EC~~LKeq~E 286 (903)
-++.+|++++|......|..+..++..++
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33445555444444444444444443333
No 125
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=21.33 E-value=5.8e+02 Score=26.18 Aligned_cols=66 Identities=12% Similarity=0.237 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy588 227 KLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK 305 (903)
Q Consensus 227 klRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~ 305 (903)
+-|++|++.-. .|-..||.++|.+=+ +|...+..+++.-..+|++...+. .+++.+..+|-.++.+
T Consensus 132 ErRkelvK~ak---~~~E~aKvaIRniRr---da~~~lKk~~K~~~isEDe~k~~e-------~eiQklTd~~i~~iD~ 197 (209)
T 4gfq_A 132 ERRRDLVKVVK---KYAEEAKVAVRNVRR---DGNDDLKKLEKAGEITEDDLRGYT-------EDIQKETDKYIAKVDE 197 (209)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHTSSCHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHhcccCCCCHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 44666666554 455688999997654 666777777788888888876655 6778888888776654
No 126
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=21.24 E-value=4.1e+02 Score=26.56 Aligned_cols=13 Identities=0% Similarity=-0.094 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q psy588 260 VMQKCQDTERKLV 272 (903)
Q Consensus 260 A~qKLeElERsL~ 272 (903)
....+.+++..|.
T Consensus 174 i~~~l~~~~~wl~ 186 (227)
T 1u00_A 174 IDDAAAHLSEVAQ 186 (227)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444443
No 127
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=21.10 E-value=3.4e+02 Score=23.80 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Q psy588 261 MQKCQDTERKLVNIENECSNLQE 283 (903)
Q Consensus 261 ~qKLeElERsL~~sE~EC~~LKe 283 (903)
.+|++++|......|..+..++.
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~ 28 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQ 28 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444444444433333333
No 128
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.07 E-value=3.5e+02 Score=24.11 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=15.6
Q ss_pred hHHHHHhhhHhHHHHHHHHHHHHHh
Q psy588 312 TIDQLLNSNQEKSNTLEKLQYETLQ 336 (903)
Q Consensus 312 ~~~~L~~~~qEKqell~~v~~~~~~ 336 (903)
+.+.+..+.+|+.++.+.|++.+-+
T Consensus 44 L~~mi~~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 44 LEEMVTRLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777776666665544
No 129
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=20.93 E-value=2.6e+02 Score=31.28 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=23.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy588 268 ERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKE 308 (903)
Q Consensus 268 ERsL~~sE~EC~~LKeq~E~Lq~EL~EL~~K~sEqvt~~~~ 308 (903)
|..+.+.+.....|++.++.....+.+|..+...+...|.+
T Consensus 97 ~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 97 EASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444444555555556666666666666666666665544
No 130
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=20.62 E-value=5.1e+02 Score=23.96 Aligned_cols=85 Identities=24% Similarity=0.286 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy588 175 KNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKML 254 (903)
Q Consensus 175 EqKLaiLQeIL~~Tk~AAE~sWqaLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlL 254 (903)
-.+|+.|+.-+..-+.. -+.|+.+..-||+-|.-... +-..-+.--...|..--++|+.+-
T Consensus 3 an~La~le~sLe~EK~S----------~eeL~kQk~eL~~~l~~l~~---------e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 3 ANRLAGLENSLESEKVS----------REQLIKQKDQLNSLLASLES---------EGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhcc----------HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHccc
Confidence 45667776666543322 45555555566665554321 222222223334455556777666
Q ss_pred HHH---HHHHHHHHHHHHHHHhhHHHH
Q psy588 255 AEK---VEVMQKCQDTERKLVNIENEC 278 (903)
Q Consensus 255 QEK---lEA~qKLeElERsL~~sE~EC 278 (903)
-|| ++.+.||+.+|+..+..|-..
T Consensus 64 ~EklAkldLE~RLsKtEKDkAiLELkL 90 (101)
T 1d7m_A 64 LEKLARMELEARLAKTEKDRAILELKL 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 665 466677777777777666433
No 131
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.46 E-value=1.5e+02 Score=30.34 Aligned_cols=88 Identities=11% Similarity=0.226 Sum_probs=0.0
Q ss_pred hhchhhhHhhHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy588 198 ALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENE 277 (903)
Q Consensus 198 aLIdEDrLLSRIE~LEnQLq~~sKN~tEDklRkeLlqLqeEK~~YE~~AKESLrKlLQEKlEA~qKLeElERsL~~sE~E 277 (903)
+.+|...+..+++.++.+|.. ..-.+...-.++...+..|+. .+++++...-+.+.+.+.+..+..++.+
T Consensus 60 ~~ld~~~~~~~~~~~~a~l~~-----~~a~l~~a~~~~~~a~~~~~r-----~~~L~~~~~~s~~~~~~a~~~~~~~~a~ 129 (341)
T 3fpp_A 60 GVIDPEQAENQIKEVEATLME-----LRAQRQQAEAELKLARVTYSR-----QQRLAQTQAVSQQDLDNAATEMAVKQAQ 129 (341)
T ss_dssp EEECCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTHHHHH-----HHHHHHTSSSTTHHHHHHHHHHHHTHHH
T ss_pred EEEChHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH-----HHHHHHcCCccHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHH
Q psy588 278 CSNLQELLDRNRDELEEI 295 (903)
Q Consensus 278 C~~LKeq~E~Lq~EL~EL 295 (903)
+...+.+++.++.+++.+
T Consensus 130 l~~~~a~l~~a~a~l~~a 147 (341)
T 3fpp_A 130 IGTIDAQIKRNQASLDTA 147 (341)
T ss_dssp HHHHHHHHHHTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHH
Done!