RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy588
(903 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 95.3 bits (236), Expect = 5e-20
Identities = 111/632 (17%), Positives = 206/632 (32%), Gaps = 172/632 (27%)
Query: 171 ENMLKNKLSK--LQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKL 228
++M K+ LSK + HI++ S A+ RL L S+ + F ++ L
Sbjct: 39 QDMPKSILSKEEIDHIIM--------SKDAVSGTLRLF---WTLLSKQEEMVQKFVEEVL 87
Query: 229 RDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKL-VNIENECSNLQELLDR 287
R K L E + +M +M E+ + + K V+ L++ L
Sbjct: 88 RINYKFLM-SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 288 NRDELEEII-------KKY-QDQVTKNKEFESTIDQL---LNSNQEKS--NTLEKLQYET 334
R +I K + V + + + +D LN S LE LQ
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ--K 204
Query: 335 LQAQKQLDAFTLKDNLMHDKLKNYYMNFHIIKEKMTNIKNELGLETKVDQN---IL---- 387
L Q D N + H I+ ++ + L++K +N +L
Sbjct: 205 LLYQ-----IDPNWTSRSDHSSNIKLRIHSIQAELRRL-----LKSKPYENCLLVLLNVQ 254
Query: 388 ----VKYFDDVHQIL--TQF-----------------DEYFLRFNESESSGLNSIEDIEK 424
F+ +IL T+F D + + E L ++ ++
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDC 313
Query: 425 VTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGG-LELQLEKLKQTYN 483
+DL ++ T S+ I + LA + K+++ DK+ +E L L+
Sbjct: 314 RPQDLPREVLTTNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 484 SDCYENEKFGKAYNCDTLLINEEKTVAPNQKDVNI-IDV------SNQYNSEKDFVS--- 533
+ ++ V P +I + + V+
Sbjct: 372 RKMF--DRLS---------------VFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 534 ----INKEIEESSRKIDDINAEIT-KCTNE------LVDAKNCLVKNEKW---------- 572
+ K+ +ES+ I I E+ K NE +VD N +
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 573 ----------VINLQEQFSLLEKS--KETWVSLKLNSAESQSSASLQSQLNDALDNIKKY 620
I E+ +L ++ K+ + +AS + + L +K Y
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS--GSILNTLQQLKFY 530
Query: 621 KEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVIKDYQNVLPSIVESMNNTKDKP 680
K + I +ND +YE+L + + LP I E++ +K
Sbjct: 531 K-PY------I------------CDND--PKYERL---VNAILDFLPKIEENLICSKYT- 565
Query: 681 QDSEQSIEEEITQQSLNPLSSELDETIHKNVE 712
++ + +L + E HK V+
Sbjct: 566 ---------DLLRIALMAEDEAIFEEAHKQVQ 588
Score = 88.0 bits (217), Expect = 8e-18
Identities = 71/523 (13%), Positives = 157/523 (30%), Gaps = 145/523 (27%)
Query: 154 LEELYQLNTCIQEALQREN------ML---KNKL--SKLQHIVIDLKKAADVSWKALIQE 202
L+ +L + E L+ +L K + + K + W L
Sbjct: 134 LQPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 203 DRLLSRVEFLESQLAAYSKSFTD------------DKLRDEIKLLHRDKSTYENQL---- 246
+ + +E L+ L ++T ++ E++ L + K YEN L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLL 251
Query: 247 ----KEVMK------KMLA--EKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEE 294
+ K+L +V +++++ L DE++
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP------DEVKS 305
Query: 295 IIKKY-----QD---QVTKN------------KEFESTIDQLLNSNQEKSNTLEKLQYET 334
++ KY QD +V ++ +T D + N +K T+ +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 335 LQAQKQLDAFTLKDNLMHDKLKNYYMNFHIIKEKMTNIKNELGLETKVDQNILVKY---- 390
L+ + + + + + +L
Sbjct: 366 LEP---------------AEYRKMFDRLSVFPP-----------SAHIPTILLSLIWFDV 399
Query: 391 -FDDVHQILTQFDEYFL--RFNESESSGLNSIEDIEKVTKDLREQLH-TAQEEYTSLQEI 446
DV ++ + +Y L + + + + SI KV + LH + + Y +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-- 457
Query: 447 VNRNEEQLAFLEQSKYL------HLDKIGGLELQLEKLKQTYNSDCYENEKF-GKAYNCD 499
+ + L +Y HL I E++ + + +F + D
Sbjct: 458 -TFDSDDLIPPYLDQYFYSHIGHHLKNIE----HPERMTLF--RMVFLDFRFLEQKIRHD 510
Query: 500 TLLINEEKTVAPNQKDVNIIDVSNQYNSEKDFVSINKEIEESSRKIDDINAEITKCTNEL 559
+ N ++ + + Y K ++ N E R ++ I + K L
Sbjct: 511 STAWNASGSILNTLQQLKF------Y---KPYICDNDPKYE--RLVNAILDFLPKIEENL 559
Query: 560 VDAKN-CLVKNEKWVINLQEQFSLLEKSKETWVSLKLNSAESQ 601
+ +K L+ + +L+ + + + A Q
Sbjct: 560 ICSKYTDLL-----------RIALMAEDEAIF-----EEAHKQ 586
Score = 73.3 bits (179), Expect = 3e-13
Identities = 84/596 (14%), Positives = 180/596 (30%), Gaps = 190/596 (31%)
Query: 17 AERKLILENTANKNAAVKIGRCIARAKVAPSNGI--FDCKVLSRNHALIW-----YYNGK 69
E I+ + + +++ + +K + F +VL N+ +
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTL-LSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 70 FYLQDTKSS--NGTFVNNQRLSKTN---EE------SAPHELCSGD-VVQFG-------V 110
+ + + +NQ +K N + A EL V+ G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 111 DVIETNRNTPVTHGCIIANLKLF-LPDGKEAKASPTSMLISSMPLEELYQLNTCIQEAL- 168
++ + V + K+F L SP ++L L++L +
Sbjct: 166 VALDVCLSYKVQCK---MDFKIFWLNLKN--CNSPETVLE---MLQKLLYQIDPNWTSRS 217
Query: 169 -------QRENMLKNKLSKLQH--------IVIDLKKAADVS----WKALIQED---RLL 206
R + ++ +L +L +V+ +V W A + ++L
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-----NVQNAKAWNAF---NLSCKIL 269
Query: 207 --SR----VEFLESQ------LAAYSKSFTDD---------------KLRDEIK------ 233
+R +FL + L +S + T D L E+
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 234 ------LLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTE--RKL----------VNIE 275
+ +T++N K V L +E + RK+ +I
Sbjct: 330 LSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 276 NECSNLQELL--DRNRDELEEIIKKYQDQ--VTKN-KEFESTIDQL---LNSNQEKSNTL 327
+ L L+ D + ++ ++ K V K KE +I + L E L
Sbjct: 389 ---TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 328 EKLQYETLQAQKQLDAFTLKDNLMHDKLKNYYMNF---HIIKEKMTNIKNELGLETKVDQ 384
+ + K D D+L+ L Y+ + H+ + + L V
Sbjct: 446 HRSIVDHYNIPKTFD----SDDLIPPYLDQYFYSHIGHHLKNIEHPE---RMTLFRMV-- 496
Query: 385 NILVKYFDDVHQILTQFDEYFLRFNE-----------SESSGLNSIEDIEKVTKDLREQL 433
+ D RF E + S LN+++ ++ + +
Sbjct: 497 -----FLD-------------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN- 537
Query: 434 HTAQEEY-TSLQEIVNRNEE-----------QLAFLEQSKYLHLDKIGGLELQLEK 477
E ++ + + + EE ++A + + + + + Q+++
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA----HKQVQR 589
Score = 70.7 bits (172), Expect = 2e-12
Identities = 96/584 (16%), Positives = 187/584 (32%), Gaps = 168/584 (28%)
Query: 378 LETKVDQNILVKYFDDVHQILTQFDEYFLRFNESESSGLNSIEDIE-KVTKDLREQLHTA 436
++ + + +Y D IL+ F++ F +++ + K +D+ + + +
Sbjct: 7 MDFETGE-HQYQYKD----ILSVFEDAF-------------VDNFDCKDVQDMPKSILSK 48
Query: 437 QEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEKLKQTYNSDCYENEKFGKAY 496
+E + I+ + + + L L K ++ + E Y
Sbjct: 49 EE----IDHIIMSKDA----VSGTLRL-------FWTLLSKQEEMVQK--FVEEVLRINY 91
Query: 497 NCDTLLINEEKTVAPNQKDVNIID-VSNQYNS----EKDFVSINKEIEESSRKIDDINAE 551
I E P+ I+ YN K VS + +
Sbjct: 92 KFLMSPIKTE-QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK----------- 139
Query: 552 ITKCTNELVDA------------KNCLV----KNEKWVINLQEQFSLLEKSKETWVSLKL 595
+ + EL A K + + K +Q + K W++LK
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK----VQCKMD----FKIFWLNLKN 191
Query: 596 NSAESQSSASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEE--YE 653
++ LQ L N + S + + I S++ +L+ LL+ YE
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-------RLLKSKPYE 244
Query: 654 KLKLVIKDYQNVLPSIVESMNN-------TKDKPQDSEQSIEEEITQQSLNPLSSELDET 706
LV+ + QN + N T+ K Q ++ T SL+ S L
Sbjct: 245 NCLLVLLNVQN--AKAWNAFNLSCKILLTTRFK-QVTDFLSAATTTHISLDHHSMTLTP- 300
Query: 707 IHKNVESVTSNMENDKSNEDDNSSVQSTD---------EVKDTEEGPHTP-----SLVDK 752
V+S+ + + +D V +T+ ++D G T DK
Sbjct: 301 --DEVKSLLLKYLDCRP-QDLPREVLTTNPRRLSIIAESIRD---GLATWDNWKHVNCDK 354
Query: 753 SEDTI--SVTTLVNVNTESSEG-----DLS------PIDPPESVIALI----NDDDTSDS 795
I S+ L E +E LS I P +++LI D
Sbjct: 355 LTTIIESSLNVL-----EPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDVMVV 407
Query: 796 SSEMTDSSTLIRIRKPKPVSVPTDASLVKPQSTTGCQTSDEFLLCNIEAHKIVQESFLFQ 855
+++ S + + K +S+P S+ + +E+ L H+ + + +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIP---SI---YLELKVKLENEYAL-----HRSIVDH--YN 454
Query: 856 VTNYFNNNHELSPLSLLGIIIMFLVILTPIMYSFENILSHITAT 899
+ F+++ L P L Y + +I H+
Sbjct: 455 IPKTFDSDD-LIPPYLDQ-------------YFYSHIGHHLKNI 484
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring
finger protein 8, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.26.1.2
Length = 145
Score = 84.6 bits (209), Expect = 2e-19
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 33 VKIGRCIARAKVAPSNGIF-----DCKVLSRNHALIWYY-NGKFYLQDTKSSNGTFVNNQ 86
V +GR ++SRNH ++ G++ + D KS NG ++N
Sbjct: 38 VTVGR-------GFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRA 90
Query: 87 RLSKTNEESAPHELCSGDVVQFGVDV 112
RL E + + GD +Q GV +
Sbjct: 91 RL----EPLRVYSIHQGDYIQLGVPL 112
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase,
signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP:
b.26.1.2
Length = 138
Score = 83.4 bits (206), Expect = 5e-19
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 17/86 (19%)
Query: 33 VKIGRCIARAKVAPSNGIF-----DCKVLSRNHALIWY-YNGKFYLQDTKSSNGTFVNNQ 86
V +GR ++SRNH ++ G++ + D KS NG ++N
Sbjct: 30 VTVGR-------GFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRA 82
Query: 87 RLSKTNEESAPHELCSGDVVQFGVDV 112
RL + + GD +Q GV +
Sbjct: 83 RLE----PLRVYSIHQGDYIQLGVPL 104
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel
beta-sheets, phosphopeptide binding motif, structural
genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 118
Score = 74.0 bits (182), Expect = 6e-16
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 33 VKIGRCIARAKVAPSNGIF--DCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSK 90
+++GR + N I D + S H I +G + +QD SSNGT +N+ L
Sbjct: 35 IRVGR------IVRGNEIAIKDAGI-STKHLRIESDSGNWVIQDLGSSNGTLLNSNAL-- 85
Query: 91 TNEESAPHELCSGDVVQFG 109
+ L GDV++ G
Sbjct: 86 --DPETSVNLGDGDVIKLG 102
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein
complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium
smegmatis}
Length = 115
Score = 71.3 bits (175), Expect = 4e-15
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 24/110 (21%)
Query: 2 AGTAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIF--DCKVLSRN 59
+G+A+L + P A + +L+ GR P + IF D V SR
Sbjct: 9 SGSALLVVK--RGPNAGSRFLLDQ-----PTTSAGR-------HPDSDIFLDDVTV-SRR 53
Query: 60 HALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
HA G+F + D S NGT+VN + + L +GD VQ G
Sbjct: 54 HAEFRLEGGEFQVVDVGSLNGTYVNREPVDS-------AVLANGDEVQIG 96
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain,
kinase substrate, GARA, FHA, cytoplasm, phosphoprotein;
HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Length = 143
Score = 71.8 bits (176), Expect = 5e-15
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 24/110 (21%)
Query: 2 AGTAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIF--DCKVLSRN 59
AG+A+L + + A L GR P + IF D V SR
Sbjct: 44 AGSALLVVKRGPNAGARFLL-------DQPTTTAGR-------HPESDIFLDDVTV-SRR 88
Query: 60 HALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
HA G+F + D S NGT+VN + + + +GD +Q G
Sbjct: 89 HAEFRINEGEFEVVDVGSLNGTYVNREPRN-------AQVMQTGDEIQIG 131
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular
interaction, glutamate metabolism, phosphoprotein,
protein binding; HET: TPO; NMR {Mycobacterium
tuberculosis} PDB: 2kkl_A
Length = 162
Score = 72.3 bits (177), Expect = 6e-15
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 24/110 (21%)
Query: 2 AGTAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIF--DCKVLSRN 59
G+A+L + P A + +L+ A GR P + IF D V SR
Sbjct: 53 PGSALLVVK--RGPNAGSRFLLDQ-----AITSAGR-------HPDSDIFLDDVTV-SRR 97
Query: 60 HALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
HA N +F + D S NGT+VN + + L +GD VQ G
Sbjct: 98 HAEFRLENNEFNVVDVGSLNGTYVNREPVDS-------AVLANGDEVQIG 140
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 71.5 bits (175), Expect = 1e-14
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 31 AAVKIGRCIARAKVAPSNGIF--DCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRL 88
+ IGR D V SR H I + L D S+NGT VNN +
Sbjct: 85 GSNIIGR-------GQDAQFRLPDTGV-SRRHLEIRWDGQVALLADLNSTNGTTVNNAPV 136
Query: 89 SKTNEESAPHELCSGDVVQFG 109
+ +L GDV++ G
Sbjct: 137 QE-------WQLADGDVIRLG 150
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase;
NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 139
Score = 70.3 bits (172), Expect = 2e-14
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 15 PFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIF--DCKVLSRNHALIWY--YNGKF 70
P + + +T++ VK+GR + + D +V S HA I + K+
Sbjct: 16 PAIGLQHAVNSTSSSKLPVKLGR-------VSPSDLALKDSEV-SGKHAQITWNSTKFKW 67
Query: 71 YLQDTKSSNGTFVNNQRLSK----TNEESAPHELCSGDVVQFG 109
L D S NGT VN+ +S + + P EL S D++ G
Sbjct: 68 ELVDMGSLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLG 110
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP:
b.26.1.2 PDB: 2aff_A*
Length = 128
Score = 69.4 bits (170), Expect = 3e-14
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 16/77 (20%)
Query: 35 IGRCIARAKVAPSNGIF--DCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTN 92
GR I V S+ H I + + L + S+N T VN + +
Sbjct: 37 FGR-------GIECDIRIQLPVV-SKQHCKIEIHEQEAILHNFSSTNPTQVNGSVIDE-- 86
Query: 93 EESAPHELCSGDVVQFG 109
P L GDV+
Sbjct: 87 ----PVRLKHGDVITII 99
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA
domain, synthetic peptide, peptide binding protein;
1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A
Length = 100
Score = 68.1 bits (167), Expect = 3e-14
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 18/94 (19%)
Query: 31 AAVKIGRCIARAKVAPSNGIF--DCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRL 88
+ IGR D V SR H I + L D S+NGT VNN +
Sbjct: 23 GSNIIGR-------GQDAQFRLPDTGV-SRRHLEIRWDGQVALLADLNSTNGTTVNNAPV 74
Query: 89 SKTNEESAPHELCSGDVVQFGVDVIETNRNTPVT 122
+ +L GDV++ G I R P+T
Sbjct: 75 QE-------WQLADGDVIRLGHSEIIV-RMHPLT 100
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell
cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP:
b.26.1.2
Length = 127
Score = 68.3 bits (167), Expect = 7e-14
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 13/106 (12%)
Query: 11 PNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIF--DCKVLSRNHALIWYYNG 68
P A+ +L+ + GR P+ + LS H I
Sbjct: 16 PIRDLSADISQVLKEKRSIKKVWTFGR-------NPACDYHLGNISRLSNKHFQILLGED 68
Query: 69 KFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDVIE 114
L + S+NGT++N Q++ K ++ L GD + GV V
Sbjct: 69 GNLLLNDISTNGTWLNGQKVEK----NSNQLLSQGDEITVGVGVES 110
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA
domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO;
1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A*
3uot_A* 3un0_B
Length = 132
Score = 66.8 bits (163), Expect = 2e-13
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 35 IGRCIARAKVAPSNGIF-DCKVLSRNHALIWY--YNGKFYLQDTKSSNGTFVNNQRLSKT 91
+GR +P + +S+ HA+I +N LQD S NGT + +
Sbjct: 49 VGR-------SPDCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKPP--RV 99
Query: 92 NEESAPHELCSGDVVQFG 109
H L +++ F
Sbjct: 100 LPPGVSHRLRDQELILFA 117
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide,
phosphoprotein, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A*
1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Length = 164
Score = 65.4 bits (159), Expect = 2e-12
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 13/106 (12%)
Query: 11 PNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIF--DCKVLSRNHALIWYYNG 68
P A+ +L+ + GR P+ + LS H I
Sbjct: 44 PIRDLSADISQVLKEKRSIKKVWTFGR-------NPACDYHLGNISRLSNKHFQILLGED 96
Query: 69 KFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDVIE 114
L + S+NGT++N Q++ K ++ L GD + GV V
Sbjct: 97 GNLLLNDISTNGTWLNGQKVEK----NSNQLLSQGDEITVGVGVES 138
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain
swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB:
1lgq_A
Length = 116
Score = 63.7 bits (155), Expect = 2e-12
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 33 VKIGRCIARAKVAPSNGI--FDCKVLSRNHALIWYY--NGKFYLQDTKSSNGTFVNNQRL 88
IGR + K++S +H I +G+ L+DT S++GT +N ++
Sbjct: 26 WTIGR-------RRGCDLSFPSNKLVSGDHCRIVVDEKSGQVTLEDT-STSGTVINKLKV 77
Query: 89 SKTNEESAPHELCSGDVVQFGVDVIETNRN 118
K L +GDV+ E N
Sbjct: 78 VKKQ----TCPLQTGDVIYLVYRKNEPEHN 103
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics,
PSI-2, protein structure in midwest center for
structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Length = 106
Score = 61.6 bits (150), Expect = 8e-12
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 57 SRNHALIWYYN-GKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
SR HA I N ++D S NG V +++ L + VV G
Sbjct: 46 SRQHAKIIIGNDNSVLIEDLGSKNGVIVEGRKIEH------QSTLSANQVVALG 93
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA
splicing, transcription; NMR {Mus musculus}
Length = 140
Score = 61.5 bits (149), Expect = 2e-11
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 35 IGRCIARAKVAPSNGIFDCKVLSRNHALIWYY--NGKFYLQDTKSSNGTFVNNQRLSKTN 92
GR D + SR HA + Y+ + +L D S++GTF+ + RL
Sbjct: 59 FGRNPDLCDF-----TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRL---- 109
Query: 93 EESAPHELCSGDVVQFG 109
E P ++ V FG
Sbjct: 110 EPHKPQQIPIDSTVSFG 126
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 66.4 bits (162), Expect = 3e-11
Identities = 56/349 (16%), Positives = 138/349 (39%), Gaps = 15/349 (4%)
Query: 146 SMLISSMPLEELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRL 205
+L + EE+ + +Q +R+ + +L +L+ L + ++ + L E L
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907
Query: 206 LSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQ 265
+ E + +LAA K ++ L + + ++ + QL+ KKM + +++ ++ +
Sbjct: 908 YAEAEEMRVRLAA-KKQELEEILHEMEARIEEEEERSQ-QLQAEKKKMQQQMLDLEEQLE 965
Query: 266 DTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQL---LNSNQE 322
+ E ++ E + + D++ + + + K E + L L +E
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 323 KSNTLEKLQYETLQAQKQLDAFTLKDNLMHDKLKNYYMNFHIIKEKMTNIKNELGLETKV 382
K+ L KL+ + +L+ K+ +L+ + EL +
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
Query: 383 DQNILVKYFDDVHQILTQFDEYFLRFNESESSGLNSIEDIEKVTKDLREQLHTAQEEYTS 442
+ L K +++ L + ++ +++ L I ++E DL+E L + +
Sbjct: 1086 LKAQLAKKEEELQAALARLEDE----TSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141
Query: 443 LQEIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEKLKQTYNSDCYENEK 491
++ E+L L+ L+ ++L+ + D +++K
Sbjct: 1142 AEKQKRDLSEELEALKTE----LEDTLDTTATQQELRGSDYKD--DDDK 1184
Score = 57.9 bits (140), Expect = 1e-08
Identities = 43/276 (15%), Positives = 98/276 (35%), Gaps = 27/276 (9%)
Query: 419 IEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEKL 478
IE+ E+ ++ L+ + Q++ L+E + E L+ K KI +E + +
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Query: 479 KQTYNSDCYENEKFGKAYNCDTLLINEEKTVAPNQKDVNIIDVSNQYNSEKDFVSINKEI 538
+ N E + + + T + EE E+ ++ K
Sbjct: 996 EDQNNKLTKERKLLEERVSDLTTNLAEE---------------------EEKAKNLTKLK 1034
Query: 539 EESSRKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKETWVSLKLNSA 598
+ I ++ + K + + K E +L EQ + L+ + +L
Sbjct: 1035 NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA-QLAKK 1093
Query: 599 ESQSSASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLV 658
E + + ++L D ++ ++ I L+E L+ ++ N ++ L
Sbjct: 1094 EEELQ-AALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152
Query: 659 IKDYQNVLPSIVESMNNTKDKPQDSEQSIEEEITQQ 694
++ + L E +T Q+ S ++ +
Sbjct: 1153 LEALKTEL----EDTLDTTATQQELRGSDYKDDDDK 1184
Score = 52.5 bits (126), Expect = 6e-07
Identities = 54/303 (17%), Positives = 115/303 (37%), Gaps = 29/303 (9%)
Query: 196 WKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLA 255
W L L +V E ++ A + K R + + L++ ++
Sbjct: 839 WMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKE------LEQKHTQLCE 892
Query: 256 EKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQV-----------T 304
EK + +K Q E L + ELEEI+ + + ++
Sbjct: 893 EKNLLQEKLQAETELYAEAEEMRVRLAA----KKQELEEILHEMEARIEEEEERSQQLQA 948
Query: 305 KNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHDKLKNYYMNFHI 364
+ K+ + + L +E+ +KLQ E + A ++ +M D+ +
Sbjct: 949 EKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL 1008
Query: 365 IKEKMTNIKNELGLETKVDQNILVKYFDDVHQILTQFDEYFLRFNESESSGLNSIEDIEK 424
++E+++++ L E + +N L K + ++++ + + +S +E
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKN-LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067
Query: 425 VTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFL------EQSKYLHLDK-IGGLELQLEK 477
+ DL EQ+ Q + L+ + + EE+L E S+ + K I LE +
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127
Query: 478 LKQ 480
L++
Sbjct: 1128 LQE 1130
Score = 50.6 bits (121), Expect = 2e-06
Identities = 52/409 (12%), Positives = 132/409 (32%), Gaps = 68/409 (16%)
Query: 254 LAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTI 313
L + + K E ++ + E +E + EL+E+ +K+ + + +
Sbjct: 842 LFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901
Query: 314 DQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHDKLKNYYMNFHIIKEKMTNIK 373
E +L + + ++ L + ++ +++ K
Sbjct: 902 QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS-----------QQLQAEK 950
Query: 374 NELGLETKVDQNILVKYFDDVHQILTQFDEYFLRFNESESSGL-NSIEDIEKVTKDLREQ 432
++ + + L +E+ E + L+ +
Sbjct: 951 KKM---------------------------------QQQMLDLEEQLEEEEAARQKLQLE 977
Query: 433 LHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEKLKQTYNSDCYENEKF 492
TA + +++ + E+Q L + + L +++ L L + ++ + K
Sbjct: 978 KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
Query: 493 GKAYNCDTLLINEEKTVAPNQKDVNIIDVSNQYNSEKDFVSINKEIEESSRKIDDINAEI 552
++++ E + +K ++ + E + ++++I E +I ++ A++
Sbjct: 1038 ------ESMISELEVRLKKEEKSRQELEKIKR-KLEGESSDLHEQIAELQAQIAELKAQL 1090
Query: 553 TKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKETWVSLKLNSAESQSSASLQSQLND 612
K EL A L N ++ LE LQ L
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHIS----------------DLQEDLES 1134
Query: 613 ALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVIKD 661
K +++ ++ E+E+LK +L+ + E D
Sbjct: 1135 EKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 42.9 bits (101), Expect = 5e-04
Identities = 43/355 (12%), Positives = 120/355 (33%), Gaps = 25/355 (7%)
Query: 401 FDEYFLRFN-ESESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQ 459
F E+ R+ + ++ D ++ + + L Y Q + LA LE+
Sbjct: 726 FQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEE 785
Query: 460 SKYLHLDKI---------GGLELQLEKLKQTYNSDCYENEKFGKAYNC--DTLLINEEKT 508
+ L + + G L + +Q + + +++ +
Sbjct: 786 ERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFX 845
Query: 509 VAPNQKDVNIIDVSNQYNSEKDFVSINKEIEESSRKIDDINAEITKCTNELVDAKNCLVK 568
+ P K + + E + +++ ++ ++ + T+ E + L
Sbjct: 846 IXPLLKVTRQEEEMQAKDEE--LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA 903
Query: 569 NEKWVINLQEQFSLLEKSKETWVSLKLNSAESQSSASLQSQLNDALDNIKKYKEEHSKMT 628
+ +E L K+ + +++++ + + ++ + E KM
Sbjct: 904 ETELYAEAEEMRVRLAAKKQ---------ELEEILHEMEARIEEEEERSQQLQAEKKKMQ 954
Query: 629 MEIESLKEKLKFSQSKENDLLEEYEKLKLVIKDYQNVLPSIVESMNNTKDKPQDSEQSIE 688
++ L+E+L+ ++ L E IK ++ + + + N + + E+ +
Sbjct: 955 QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014
Query: 689 EEITQQSLNPLSSELDETIHKNVESVTSNMENDKSNEDDNSSVQSTDEVKDTEEG 743
+ +L + + + E + + + S Q +++K EG
Sbjct: 1015 D--LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067
Score = 38.7 bits (90), Expect = 0.011
Identities = 24/219 (10%), Positives = 78/219 (35%), Gaps = 4/219 (1%)
Query: 524 QYNSEKDFVSINKEIEESSRKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLL 583
Q +E + + ++ + + + + ++ T +A+ V+ L+E +
Sbjct: 873 QQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEM 932
Query: 584 EKSKETWVSLKLNSAESQSSASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQS 643
E E + + +Q Q+ D + +++ + K+ +E + K+K +
Sbjct: 933 EARIEE--EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMED 990
Query: 644 KENDLLEEYEKLKLVIKDYQNVLPSIVESMNNTKDKPQDSEQSIEEEITQQSLNPLSSEL 703
+ ++ KL K + + + ++ ++K ++ + + + ++ L L
Sbjct: 991 DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH--ESMISELEVRL 1048
Query: 704 DETIHKNVESVTSNMENDKSNEDDNSSVQSTDEVKDTEE 742
+ E + + + D + + +
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.50A {Synechocystis SP}
Length = 131
Score = 60.2 bits (146), Expect = 5e-11
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 33/121 (27%)
Query: 10 RPNSHPFAERKLILENTANK------NAAVKIGRCIARAKVAPSNGIF--DCKVLSRNHA 61
P++ P E LI+ + A + IGR +P I V SR HA
Sbjct: 3 DPSAKPLQEHILIILDDAGRREVLLTETFYTIGR-------SPRADIRIKSQFV-SRIHA 54
Query: 62 LI-----WYYNGKFYLQDT-----KSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVD 111
++ + + D S NG +N +++ + H + +GD + G
Sbjct: 55 VLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMINGKKVQE-------HIIQTGDEIVMGPQ 107
Query: 112 V 112
V
Sbjct: 108 V 108
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide,
cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae}
PDB: 2jql_A*
Length = 151
Score = 60.8 bits (147), Expect = 6e-11
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 22/86 (25%)
Query: 33 VKIGRCIARAKVAPSNGIF--DCKVLSRNHALIWY-------YNGKFYLQDTKSSNGTFV 83
IGR + S + + + S HA + KS NGTF+
Sbjct: 40 TTIGR-------SRSCDVILSEPDI-STFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFI 91
Query: 84 NNQRLSKTNEESAPHELCSGDVVQFG 109
N RL K + L +GD + FG
Sbjct: 92 NGNRLVK-----KDYILKNGDRIVFG 112
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domai domain, PRE-mRNA retention and
splicing; 1.80A {Saccharomyces cerevisiae}
Length = 158
Score = 59.0 bits (142), Expect = 2e-10
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 50 IFDCKVLSRNHALIWY----YNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDV 105
+ S+ H +I + K Y+ D SSNGT +NN + + EL SGDV
Sbjct: 84 GIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVI----PGARYIELRSGDV 139
Query: 106 VQFG 109
+
Sbjct: 140 LTLS 143
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domai domain, PRE-mRNA retention and
splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Length = 205
Score = 56.5 bits (135), Expect = 4e-09
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 50 IFDCKVLSRNHALIWY----YNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDV 105
+ S+ H +I + K Y+ D SSNGT +NN + + EL SGDV
Sbjct: 131 GIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVI----PGARYIELRSGDV 186
Query: 106 VQFG 109
+
Sbjct: 187 LTLS 190
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 7e-08
Identities = 82/501 (16%), Positives = 142/501 (28%), Gaps = 164/501 (32%)
Query: 14 HPFAERKLILENTANKNAAVKIGRCIARAKVA--------PSNGIFDCKVLSRNHALIWY 65
H A KL+ EN ++ + A++ ++ +F + + +A +
Sbjct: 102 HALA-AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF--RAVGEGNAQL-- 156
Query: 66 Y-------NGKFY---LQDT----KSSNGTFVNN-----QRLSKTNEESAPHELCSGDVV 106
N Y L+D G + L +T ++
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-------- 208
Query: 107 QFGVDVIETNRNTPVTHGCIIANLKLFLPDGKEAKASPTSMLIS---SMPLEELYQL--- 160
F T G N+ +L + + L+S S PL + QL
Sbjct: 209 -F-------------TQGL---NILEWLEN--PSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 161 -NTCIQEALQRENM---LKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEF---LE 213
T + LK Q +V + A SW++ R V F +
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 214 SQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLA----------EKVEVMQK 263
A + S L D + EN + V ML+ + V
Sbjct: 310 CYEAYPNTSLPPSILEDSL----------ENN-EGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 264 CQDTERK----LVN-------------IENECSNLQEL-----LDRNRDELEEIIKKYQD 301
++ LVN + L++ LD++R E K+ +
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 302 Q---VTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQ-AQKQL-----DAFTLKDNLMH 352
+ V F S LL + + L + K + D F D
Sbjct: 419 RFLPVA--SPFHS---HLLVPASDL--INKDLVKNNVSFNAKDIQIPVYDTFDGSD---- 467
Query: 353 DKLKNYYMNFHIIKEKMTNIKNELGLETKVDQNILVKYFDDVH-QILTQFDE-YFLRFNE 410
++ +I + VD I+ V + TQF + L F
Sbjct: 468 ------------LRVLSGSISERI-----VDC-IIRLP---VKWETTTQFKATHILDFGP 506
Query: 411 SESSGLNSIEDIEKVTKDLRE 431
+SGL +T ++
Sbjct: 507 GGASGL------GVLTHRNKD 521
Score = 54.7 bits (131), Expect = 1e-07
Identities = 93/640 (14%), Positives = 186/640 (29%), Gaps = 233/640 (36%)
Query: 181 LQHIVI---DLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHR 237
+ + + L+ V + +L + +F + DD+ +L+ +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQL--QEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 238 DKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIK 297
+ L ++ VE ++ ++ L +
Sbjct: 64 ----F---L-----GYVSSLVE---------------PSKVGQFDQV-------LNLCL- 88
Query: 298 KYQDQVTKNKEFESTIDQLLNSNQEKSN------TLEKLQYETLQAQKQLDAFTLKDNLM 351
EFE+ L N + L + TL K+L
Sbjct: 89 ---------TEFENCY---LEGN----DIHALAAKLLQENDTTLVKTKEL---------- 122
Query: 352 HDKLKNYYMNFHIIKEKMTNIKNELGLETKVDQNILVKYFDDVHQILTQF------DEYF 405
+KNY + K N + N Q++ F D+YF
Sbjct: 123 ---IKNYITARIMAKRPFDKKSNSALFRAVGEGNA---------QLVAIFGGQGNTDDYF 170
Query: 406 LRFNESESSGLNSIEDIEKVTKDLREQLHTAQEEYTSL-QEIVNRNEEQLAFLEQSKYLH 464
++LR+ L+ + Y L +++ + E L+ L ++
Sbjct: 171 ---------------------EELRD-LY---QTYHVLVGDLIKFSAETLSELIRT---- 201
Query: 465 LDKIGGLELQLEKLKQTYNSDCYENEKFGKAYNCDTLLINEEKTVAPNQKDVNIIDVS-- 522
D + F + N L N T P++ + I +S
Sbjct: 202 ------------------TLDA--EKVFTQGLNILEWLENPSNT--PDKDYLLSIPISCP 239
Query: 523 ----NQYNSEKDFVSINKEIEESSRKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQE 578
Q +V K + + ++ T + LV A
Sbjct: 240 LIGVIQLAH---YVVTAKLLGFTPGELRSYLKGATGHSQGLVTA---------------- 280
Query: 579 QFSLLEKSKETWVSLKLNS-----------AESQSSASLQS----QLNDALDNIKKYKEE 623
+ ++ +W S ++ + S L D+L+N
Sbjct: 281 --VAIAETD-SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN------N 331
Query: 624 HSKMT-M-EIESL-KEKLKFSQSKENDLLEEYEKLK--LVIKDYQNVL---PSIVESMNN 675
+ M I +L +E+++ +K N L ++++ LV V+ P + +N
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 676 T--KDK-PQDSEQSIEEEITQQSLN------PLS----SELDETIHKNVESVTSNMENDK 722
T K K P +QS +++ L P++ S L + + + D
Sbjct: 392 TLRKAKAPSGLDQS-RIPFSERKLKFSNRFLPVASPFHSHL-------LVPASDLINKDL 443
Query: 723 SNED---DNSSVQSTDEVKDTEEGPH--------TPSLVD 751
+ + +Q V DT +G + +VD
Sbjct: 444 VKNNVSFNAKDIQIP--VYDTFDGSDLRVLSGSISERIVD 481
Score = 52.4 bits (125), Expect = 6e-07
Identities = 54/296 (18%), Positives = 92/296 (31%), Gaps = 106/296 (35%)
Query: 107 QFGVDVIETNRNTPVT---H-----GCIIANLKLFL-----PDG--------KEAKASPT 145
+G +++ N PV H G I + DG KE T
Sbjct: 1656 TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 146 SMLISSMPLEELYQ-LNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDR 204
S S L T Q AL L + K DLK K LI D
Sbjct: 1716 SYTFRS-EKGLLSATQFT--QPAL----TL---MEKA--AFEDLKS------KGLIPADA 1757
Query: 205 LL---SRVEFL-E-SQLAAYSKSFTDDKLRDEIKLLH-RDKSTYE----NQLKEVMKKML 254
S L E + LA+ + + + ++++ R + ++L M+
Sbjct: 1758 TFAGHS----LGEYAALASLADVMS---IESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 255 A------------EKVE-VMQKCQDTERKLVNIENE-CSNLQ-----ELLDRNRDELEEI 295
A E ++ V+++ LV I N N Q +L R D + +
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL--RALDTVTNV 1868
Query: 296 IKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLM 351
LN + + + +LQ ++L ++ ++ +L
Sbjct: 1869 ---------------------LNFIKLQKIDIIELQ-KSLSLEE------VEGHLF 1896
Score = 48.1 bits (114), Expect = 2e-05
Identities = 49/267 (18%), Positives = 84/267 (31%), Gaps = 81/267 (30%)
Query: 6 ILTCR-PNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIW 64
++T + P E + L+ + + IA S F V A+
Sbjct: 250 VVTAKLLGFTP-GELRSYLKGATGHSQGLVTAVAIAETDSWES---FFVSVRK---AITV 302
Query: 65 YYNGKFYL----QDTKSSNGTFVNNQRLSKTNEESAPHEL--CSG---DVVQFGVDVIET 115
F++ + + + S N E P + S + VQ V+ +T
Sbjct: 303 L----FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN--KT 356
Query: 116 NRNTPVTHGCIIA--NLKLFLPDGKEAKASPTSMLISSMPLEELYQLNTCIQEA------ 167
N + P I+ N ++++S P + LY LN +++A
Sbjct: 357 NSHLPAGKQVEISLVN-------------GAKNLVVSGPP-QSLYGLNLTLRKAKAPSGL 402
Query: 168 -------LQRENMLKNK-L-------SKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFL 212
+R+ N+ L S L L A+D LI +D + + V F
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHL------LVPASD-----LINKDLVKNNVSFN 451
Query: 213 ESQLAA--YSKSFTDD-----KLRDEI 232
+ Y T D L I
Sbjct: 452 AKDIQIPVYD---TFDGSDLRVLSGSI 475
Score = 41.6 bits (97), Expect = 0.002
Identities = 100/631 (15%), Positives = 186/631 (29%), Gaps = 227/631 (35%)
Query: 72 LQDTKSSNGTFVNN-----QRLSKTNEESAPHELCSGDVVQFGVDVIETNRNTPVTHGCI 126
LQ+ F + + +E + P EL G + + ++E ++
Sbjct: 33 LQEQ------FNKILPEPTEGFAADDEPTTPAELV-GKFLGYVSSLVEPSKVGQFDQ--- 82
Query: 127 IANLKL------FLPDGKEAKASPTSMLISSMPLEELYQLNTCIQEALQRENMLKNKLSK 180
+ NL L +L +G + A L + + E ++ + ++KN ++
Sbjct: 83 VLNLCLTEFENCYL-EGNDIHA-----LAAKLLQEN-------DTTLVKTKELIKNYITA 129
Query: 181 LQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSF-----TDDKLRDEIKLL 235
K + L V +QL A F TDD +E++ L
Sbjct: 130 RIMAKRPFDKKS---------NSALFRAVGEGNAQLVAI---FGGQGNTDDYF-EELRDL 176
Query: 236 HRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEI 295
+ TY + +L+ + + L E+
Sbjct: 177 Y---QTYH-----------------------------------VLVGDLIKFSAETLSEL 198
Query: 296 IKKYQDQVTKNKEFESTID--QLLNSNQEKSNTLEKLQYETLQAQKQLD--AFTLKDNLM 351
I+ D K F ++ + L E + Y L + +
Sbjct: 199 IRTTLDA---EKVFTQGLNILEWL----ENPSNTPDKDY--------LLSIPISCPLIGV 243
Query: 352 HDKLKNYYMNFHIIKEKMTNIKNEL-GLETKVDQNILV-----------KYFDDVHQILT 399
L +Y + ++ +++ L G T Q ++ +F V + +T
Sbjct: 244 IQ-LAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 400 -----------QFDEYFLRFNESESS---------------GLNSIEDIEKVTKDLREQL 433
+ L + E S L + E ++ L
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL-TQEQVQDYVNKTNSHL 360
Query: 434 HTAQEEYTSLQEIVN--RNEEQLAF----LEQSKYLHLDKIGGLELQLEKLKQTYNSD-- 485
++ SL VN +N QS L+ GL L L K K D
Sbjct: 361 PAGKQVEISL---VNGAKN-----LVVSGPPQS--LY-----GLNLTLRKAKAPSGLDQS 405
Query: 486 --CYENEK--FGKA-------YNCDTL-----LINE---EKTVAPNQKDVNIIDVSNQYN 526
+ K F ++ L LIN+ + V+ N KD+ I V Y+
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ-IPV---YD 461
Query: 527 SE--KDFVSINKEIEESSRKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQF---- 580
+ D ++ I E +D I V + +++ F
Sbjct: 462 TFDGSDLRVLSGSISERI--VDCI-------IRLPVKWETTTQFKATHILD----FGPGG 508
Query: 581 -----SLLEKSKE-TWV------SLKLNSAE 599
L ++K+ T V +L +N +
Sbjct: 509 ASGLGVLTHRNKDGTGVRVIVAGTLDINPDD 539
Score = 38.5 bits (89), Expect = 0.014
Identities = 46/363 (12%), Positives = 97/363 (26%), Gaps = 141/363 (38%)
Query: 652 YEKLKLVIKDYQNVLPSIVESMNNTKDKPQDSEQSIEEEITQQSLNPLSSELDET----- 706
+L+ + + +LP T+ D E + E+ + L +SS ++ +
Sbjct: 30 ASQLQ---EQFNKILPE------PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 707 --------------------IHKNVESVTSNMENDKSNEDDNSS------VQSTDEVKDT 740
IH ++ + + + + + + K
Sbjct: 81 DQVLNLCLTEFENCYLEGNDIH----ALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 741 EEGPHTPSLVDKSEDTISVTTLVNV-----NTES--SEGDLSPI--DPPESVIALIND-- 789
+ +L + LV + NT+ E L + V LI
Sbjct: 137 FDKKSNSALFRAVGE--GNAQLVAIFGGQGNTDDYFEE--LRDLYQTYHVLVGDLIKFSA 192
Query: 790 -------DDTSDSSSEMTDSSTLIR-IRKPK-----------PVSVP------------- 817
T D+ T ++ + P P+S P
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 818 ------TDASLVKP-QSTTGC-------------QTSDEFLLCNIEAHKIV-------QE 850
T L + TG + + F + +A ++ E
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 851 SF------LFQVTNYFNNNHEL-SP-LSLLGIIIMFLVILTPIMYSFENILSHITAT--Y 900
++ + + NN + SP LS+ + + E + ++ T +
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNL-------------TQEQVQDYVNKTNSH 359
Query: 901 DPE 903
P
Sbjct: 360 LPA 362
Score = 37.3 bits (86), Expect = 0.028
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 40/113 (35%)
Query: 533 SINKEIEESSRKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKETWVS 592
+ + + + + + K T LV+ N
Sbjct: 1816 RVAASFSQEA--LQYVVERVGKRTGWLVEIVN---------------------------- 1845
Query: 593 LKLNSAESQ-----SSASLQSQLNDALDNIK--KYKEEHSKMTMEIESLKEKL 638
N Q +L + + + L+ IK K + ++ +E ++ L
Sbjct: 1846 --YNVENQQYVAAGDLRALDT-VTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 37.3 bits (86), Expect = 0.031
Identities = 56/320 (17%), Positives = 106/320 (33%), Gaps = 105/320 (32%)
Query: 214 SQ-----LAAYSKSFTDDKLRDEIKLLHRDKSTYEN---QLKEVMKKMLAEKVEVMQKCQ 265
SQ + Y S + + D + + +++ + +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRA-----DNHFKDTYGFSILDIVINNPVNLT-IHFGGE 1679
Query: 266 DTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSN 325
+++ EN + + E + + + E+I K+ ++ + + F S LL++ Q
Sbjct: 1680 -KGKRIR--ENYSAMIFETIVDGKLKTEKIFKEI-NEHSTSYTFRSEKG-LLSATQ---F 1731
Query: 326 T------LEKLQYETLQAQ--KQLDAFTLKDNLMHDKLKNYYMNF--HIIKEKMTNIKNE 375
T +EK +E L+++ DA F H
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADAT-----------------FAGH-----------S 1763
Query: 376 LG-------------LETKVDQNILVKYFDDVHQILTQFDEY------FLRFNESESSGL 416
LG +E+ V+ +V Y Q+ DE + N +
Sbjct: 1764 LGEYAALASLADVMSIESLVE---VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 417 NSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEE--Q------LAFLEQS----KYLH 464
S E ++ V + + + L EIVN N E Q L L+ ++
Sbjct: 1821 FSQEALQYVVERV-------GKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Query: 465 LDKIGGLELQ----LEKLKQ 480
L KI +ELQ LE+++
Sbjct: 1874 LQKIDIIELQKSLSLEEVEG 1893
Score = 36.6 bits (84), Expect = 0.044
Identities = 45/331 (13%), Positives = 94/331 (28%), Gaps = 120/331 (36%)
Query: 624 HSK-MTMEI---------------ESLKEKLKFSQSKENDLLEEYEKLKLVI-------K 660
+ M M++ K+ FS D++ + +
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSIL---DIVINNPVNLTIHFGGEKGKR 1683
Query: 661 DYQNVLPSIVESMNNTKDKPQDSEQSIEEEITQQSLNPLSSELDETIHKNVESVTSNMEN 720
+N I E++ + K K + + I E T + L T T
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT------QFT----- 1732
Query: 721 DKSNEDDNSSVQSTDEVKDTEEGPHTPSLVDKSEDTISVTTLVNVNTESSEGDLSPIDPP 780
Q P+L + ++ S+G + P
Sbjct: 1733 -----------Q--------------PALT-----LMEKAAFEDL---KSKG----LIPA 1755
Query: 781 ESVI---------ALINDDDTSDSSSEMT--DSSTLIRIR-KPKPVSVPTDASL------ 822
++ AL S + M+ ++ R V+VP D
Sbjct: 1756 DATFAGHSLGEYAAL-----ASLADV-MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 823 --VKPQS--TTGCQTSDEFLLCNIEAHKIVQESFLFQVTNYFNNNH-------ELSPLSL 871
+ P + Q + ++++ + + +L ++ NY N + +L L
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGK----RTGWLVEIVNY-NVENQQYVAAGDLRALDT 1864
Query: 872 LGIIIMFL------VILTPIMYSFENILSHI 896
+ ++ F+ +I S E + H+
Sbjct: 1865 VTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 36.2 bits (83), Expect = 0.061
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 26/110 (23%)
Query: 424 KVTKDLREQ--LHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEKLKQT 481
K +D+ + H S+ +IV N L GG + + ++++
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF----------GGEKGK--RIREN 1687
Query: 482 YNSDCYENEKFGKAYNCDTLLINEEKTVAPNQKDVNIIDVSNQYNSEKDF 531
Y++ +E D L E K++N S + SEK
Sbjct: 1688 YSAMIFET-------IVDGKLKTE-----KIFKEINEHSTSYTFRSEKGL 1725
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: b.26.1.2
Length = 120
Score = 49.5 bits (118), Expect = 2e-07
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 57 SRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
+H + +G + T+V+ QR+S+ L SG +QFG
Sbjct: 58 QPHHCDLTNMDGVVTVTPRSMDAETYVDGQRISE------TTMLQSGMRLQFG 104
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2;
phosphoprotein-binding domain, checkpoint kinase,
transferase; HET: TPO; 2.7A {Homo sapiens} SCOP:
b.26.1.2
Length = 149
Score = 48.5 bits (115), Expect = 8e-07
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 57 SRNHALIWYYNGK-----FYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
S+ H I+ G Y++D S NGTFVN + + K L + +
Sbjct: 77 SKKHFRIFREVGPKNSYIAYIEDH-SGNGTFVNTELVGKGKR----RPLNNNSEIALS 129
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 50.1 bits (120), Expect = 4e-06
Identities = 26/222 (11%), Positives = 79/222 (35%), Gaps = 8/222 (3%)
Query: 155 EELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLES 214
+ + +Q L+ + L+ + + W A + R L + +L+
Sbjct: 836 QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895
Query: 215 QLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNI 274
KL+ E + + + K++ + + +++ +K + ++ ++
Sbjct: 896 CYRRMMAKRELKKLKIEARSV--------ERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947
Query: 275 ENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYET 334
+ +NL+ ++L +++ + + K + + L + L + Q E
Sbjct: 948 LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007
Query: 335 LQAQKQLDAFTLKDNLMHDKLKNYYMNFHIIKEKMTNIKNEL 376
++ D + + + +LK KE++ ++
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049
Score = 47.4 bits (113), Expect = 2e-05
Identities = 33/190 (17%), Positives = 79/190 (41%), Gaps = 21/190 (11%)
Query: 536 KEIEESSRKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKETWVSLKL 595
K+++ +R ++ N+++ + + + K +L E+ + LE + T
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST------ 960
Query: 596 NSAESQSSASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKL 655
E++ S +L + + K + EI L+++L +Q+++ + E +K
Sbjct: 961 ---ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017
Query: 656 KLVIKDYQNVLPSIVESMNNTKDKPQDSEQSIEEEITQQSLNPLSSELDETIHKNVESVT 715
K + + L E K + ++ + I ++ + E+ ET+ K + T
Sbjct: 1018 KHETEQLVSEL---KEQNTLLKTEKEELNRRIHDQ---------AKEITETMEKKLVEET 1065
Query: 716 SNMENDKSNE 725
+E D ++E
Sbjct: 1066 KQLELDLNDE 1075
Score = 41.6 bits (98), Expect = 0.001
Identities = 29/216 (13%), Positives = 80/216 (37%), Gaps = 35/216 (16%)
Query: 423 EKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEKLKQTY 482
+ K ++L +++ E ++ L++ + L ++ L+ TY
Sbjct: 899 RMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITY 958
Query: 483 NSDCYENEKFGKAYNCDTLLINEEKTVAPNQKDVNIIDVSNQYNSEKDFVSINKEIEESS 542
+++ + + + EE A N+ + +++ + KE+ ++
Sbjct: 959 STETEKLRSDVE----RLRMSEEEAKNATNRVL----------SLQEEIAKLRKELHQTQ 1004
Query: 543 RKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKETWVSLKLNSAESQS 602
+ I K +E E+ V L+EQ +LL+ KE +++ +
Sbjct: 1005 TEKKTIEEWADKYKHET----------EQLVSELKEQNTLLKTEKEELNR-RIHDQAKEI 1053
Query: 603 SASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKL 638
+ +++ +L EE ++ +++ + +
Sbjct: 1054 TETMEKKL----------VEETKQLELDLNDERLRY 1079
Score = 33.9 bits (78), Expect = 0.29
Identities = 25/227 (11%), Positives = 80/227 (35%), Gaps = 13/227 (5%)
Query: 255 AEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTK-NKEFESTI 313
A ++ Q+ ++ + + LQ LL + + + + K +
Sbjct: 819 AIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWL 878
Query: 314 DQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHDKLKNYYMNFHIIKEKMTNIK 373
++ K+ + Y + A+++L ++ + ++ K + + N
Sbjct: 879 ARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV-ERYKK-------LHIGLENKI 930
Query: 374 NELGLETKVDQNILVKYFDDVHQILTQFDEYFLRFNESESSGLNSIEDIEKVTKDLREQL 433
+L + + ++ + + E S + + E+ K+ ++
Sbjct: 931 MQLQRKIDEQNKEYKSLLEKMNNLEITYSTE----TEKLRSDVERLRMSEEEAKNATNRV 986
Query: 434 HTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEKLKQ 480
+ QEE L++ +++ + + +E+ + + L +L++
Sbjct: 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNT 1033
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 40.3 bits (94), Expect = 4e-04
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 57 SRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
H +I + + + + TFVN +S P +L GD + +G
Sbjct: 68 LPEHCIIDITSEGQVMLTPQKNTRTFVNGSSVSS------PIQLHHGDRILWG 114
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 43.0 bits (100), Expect = 5e-04
Identities = 50/384 (13%), Positives = 121/384 (31%), Gaps = 15/384 (3%)
Query: 238 DKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIK 297
D + K + K V + QK D K+V + + +L R D + I
Sbjct: 331 DLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQ-QSLAAYNQRKADLVNRSIA 389
Query: 298 KYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHDKLKN 357
+ ++ T ++++ +T+ + ++ + D L+ + +
Sbjct: 390 QMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPEL 449
Query: 358 YYMNFHIIKEKMTNIKNELGLETKVDQNILVKYFDDVHQILTQFDEYFLRFNESESSGLN 417
N I+ E L E D ++ K+ + + T +E + ++
Sbjct: 450 LQRNREILDE----SLRLLDEEEATDNDLRAKFKERWQR--TPSNELYKPLRAEGTNFRT 503
Query: 418 SIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEK 477
++ + ++E + ++ + + E A + + + + L+
Sbjct: 504 VLDKAVQADGQVKECYQSHRDT---IVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKS 560
Query: 478 LKQTYNSDCYENEKFGKAYNCDTLLINEEKTVAPNQKDVNIIDVSNQYNSEKDFVSINKE 537
L + E E + + A Q V + + ++ + + +
Sbjct: 561 LLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTK 620
Query: 538 IEESSRKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKETWVSLKLNS 597
++ES +K + + I E K ++ +E L + + +V L N
Sbjct: 621 VQESLKKQEGLLKNIQVSHQEFSKMK----QSNNEANLREEVLKNLATAYDNFVELVANL 676
Query: 598 AESQSS-ASLQSQLNDALDNIKKY 620
E L L +
Sbjct: 677 KEGTKFYNELTEILVRFQNKCSDI 700
Score = 42.2 bits (98), Expect = 7e-04
Identities = 48/446 (10%), Positives = 126/446 (28%), Gaps = 26/446 (5%)
Query: 240 STYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKK- 298
+ Y + + E++ +Q + + + + +E N+++ D+ L K
Sbjct: 262 AEYHQSILAKQQYYFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDN 321
Query: 299 ---YQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHDKL 355
Y D+V K+ + I + N ++ L + + + +
Sbjct: 322 DFIYHDRVPDLKDLDP-IGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRK 380
Query: 356 KNYYMNFHIIKEKMTNIKNELGLETKVDQNILVKYFDDVHQILTQFDEYFLRFNESESSG 415
+ + T + N + + I D V Q + + ++
Sbjct: 381 ADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVD 440
Query: 416 L------NSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIG 469
++ ++ + L + L+ ++ E K L +
Sbjct: 441 QLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAE--- 497
Query: 470 GLELQLEKLKQTYNSDCYENEKFGKAYNCDTLLINEEKTVAPNQKDVNIIDVSNQYNSEK 529
L + +D E + + LL E + N
Sbjct: 498 -GTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVN 556
Query: 530 DFVSINKEIEESSRKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKET 589
S+ ++E ++ + + ++ ++ + + + + L++
Sbjct: 557 VLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGG 616
Query: 590 WVSLKLNSAESQSSASLQSQ-LNDALDNIKKYKEEHSKMTMEIESL----------KEKL 638
+ S + Q Q + +K+ E + +++L L
Sbjct: 617 LTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANL 676
Query: 639 KFSQSKENDLLEEYEKLKLVIKDYQN 664
K N+L E + + D
Sbjct: 677 KEGTKFYNELTEILVRFQNKCSDIVF 702
Score = 39.9 bits (92), Expect = 0.004
Identities = 30/291 (10%), Positives = 82/291 (28%), Gaps = 15/291 (5%)
Query: 201 QEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEV 260
+ D + + + + L I+ + D K V
Sbjct: 380 KADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTV 439
Query: 261 MQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSN 320
Q ++ L LLD ++ K++++ +
Sbjct: 440 DQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQR--------------- 484
Query: 321 QEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHDKLKNYYMNFHIIKEKMTNIKNELGLET 380
+ + L+ E + LD D + + +++ ++ + + +
Sbjct: 485 TPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSAN 544
Query: 381 KVDQNILVKYFDDVHQILTQFDEYFLRFNESESSGLNSIEDIEKVTKDLREQLHTAQEEY 440
+ + + +L+ DE E+ + D+ Q EE
Sbjct: 545 PAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEA 604
Query: 441 TSLQEIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEKLKQTYNSDCYENEK 491
S+ E+ +++S + +++ ++ + S+ N +
Sbjct: 605 LSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLR 655
Score = 33.8 bits (76), Expect = 0.30
Identities = 20/171 (11%), Positives = 51/171 (29%), Gaps = 7/171 (4%)
Query: 149 ISSMPLEELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSR 208
I S + Q + + + L + + + DLK +
Sbjct: 540 IPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGV 599
Query: 209 VEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTE 268
+ + + + L +++ + + ++ ++ K + + E
Sbjct: 600 INEEALSVTELDRVY--GGLTTKVQESLKKQEGLLKNIQVSHQEFSKMK-QSNNEANLRE 656
Query: 269 RKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNS 319
L N+ N EL L+E K Y + F++ ++ +
Sbjct: 657 EVLKNLATAYDNFVEL----VANLKEGTKFYNELTEILVRFQNKCSDIVFA 703
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 42.3 bits (100), Expect = 8e-04
Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 9/185 (4%)
Query: 146 SMLISSMPLEELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRL 205
++ S L + + A N + + S L+ + +A + K + L
Sbjct: 820 AIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVL 879
Query: 206 LSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQ 265
L + + +L + + L + ++ +K + A E
Sbjct: 880 LQKYNRILKKLENW-------ATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEG 932
Query: 266 DTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSN 325
+ L++I + + L + + E + Q T K T L + E+
Sbjct: 933 QSNSDLLSILAQLTELNY--NGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQ 990
Query: 326 TLEKL 330
+E L
Sbjct: 991 KIEDL 995
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 40.4 bits (94), Expect = 0.002
Identities = 42/268 (15%), Positives = 89/268 (33%), Gaps = 9/268 (3%)
Query: 226 DKLRDEIKLLHRDKSTYENQLKEV---MKKMLAEKVEVMQKCQDTERKLVNIENECSNLQ 282
D ++ ++++L DK ++ E K ++ + ++KL E+E
Sbjct: 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61
Query: 283 ELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLD 342
E L +++LE KK D I L + +A+K D
Sbjct: 62 EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAAD 121
Query: 343 AFTLKDNLMHDKLKNYYMNFHIIKEKMTNIKNELG------LETKVDQNILVKYFDDVHQ 396
++ + + I + ++ K+ E I+ + +
Sbjct: 122 ESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEE 181
Query: 397 ILTQFDEYFLRFNESESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAF 456
+ E + N+++ +E + ++ +EE L + + E + F
Sbjct: 182 RAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEF 241
Query: 457 LEQSKYLHLDKIGGLELQLEKLKQTYNS 484
E+S I LE +L K Y +
Sbjct: 242 AERSVTKLEKSIDDLEDELYAQKLKYKA 269
Score = 32.7 bits (74), Expect = 0.51
Identities = 31/270 (11%), Positives = 89/270 (32%), Gaps = 2/270 (0%)
Query: 420 EDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEKLK 479
E+ + A++ L++ + +++L E + + + + +LE +
Sbjct: 16 ENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAE 75
Query: 480 QTYNSDCYENEKFGKAYNCDTLLINEEKTVAPNQKDVNIIDVSNQYNSEKDFVSINKEIE 539
+ + + ++ + SE+ I +
Sbjct: 76 KKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135
Query: 540 ESSRKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKETWVSLKLNSAE 599
+ K++ ++ + + DA + + ++ ++ E+ E E
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 600 SQSSASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVI 659
+ + + L +KY ++ K EI+ L +KLK ++++ KL+ I
Sbjct: 196 EIKT--VTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI 253
Query: 660 KDYQNVLPSIVESMNNTKDKPQDSEQSIEE 689
D ++ L + ++ + +
Sbjct: 254 DDLEDELYAQKLKYKAISEELDHALNDMTS 283
Score = 31.9 bits (72), Expect = 0.80
Identities = 39/296 (13%), Positives = 106/296 (35%), Gaps = 21/296 (7%)
Query: 419 IEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEKL 478
++ I+K + L+ A + + E++ LE K+ E +L+K
Sbjct: 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 479 KQTYNSDCYENEKFGKAYNCDTLLINEEKTVAPNQKDVNIIDVSNQYNSEKDFVSINKEI 538
+ + E K + E VA + + + + +++ + +++
Sbjct: 61 SEALKDAQEKLELAEKK------ATDAEADVASLNRRIQLFEEELD-RAQERLATALQKL 113
Query: 539 EESSRKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKETWVSLKLNSA 598
EE+ + D+ + + + + E + + ++ E
Sbjct: 114 EEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYE---------E 164
Query: 599 ESQSSASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLV 658
++ ++S L A + + + + +++ EI+++ LK +++ ++ +K +
Sbjct: 165 VARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEE 224
Query: 659 IKDYQNVLPSIVESMNNTKDKPQDSEQSIEE-----EITQQSLNPLSSELDETIHK 709
IK + L + E+SI++ + +S ELD ++
Sbjct: 225 IKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND 280
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase,
FHA domain, ATP-binding, cell cycle, mutation,
LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens}
PDB: 3i6w_A
Length = 419
Score = 40.4 bits (95), Expect = 0.002
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 13/83 (15%)
Query: 35 IGR---CIARAKVAPSNGIFDCKVLSRNHALIWYYNGK-----FYLQDTKSSNGTFVNNQ 86
GR C + S+ H I+ G Y++D S NGTFVN +
Sbjct: 32 FGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDH-SGNGTFVNTE 90
Query: 87 RLSKTNEESAPHELCSGDVVQFG 109
+ K L + +
Sbjct: 91 LVGKGKR----RPLNNNSEIALS 109
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel
beta-sheets, transferase; NMR {Saccharomyces cerevisiae}
SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A*
1k2m_A* 1k2n_A*
Length = 158
Score = 37.8 bits (87), Expect = 0.004
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 20/71 (28%)
Query: 56 LSRNHALIWYYN---------------GKFYLQDTKSSNGTFVNNQRLSKTNEESAPHEL 100
LSR H I+ + T +N +++NN R+ + L
Sbjct: 46 LSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNVSYLNNNRMIQGT----KFLL 100
Query: 101 CSGDVVQFGVD 111
GD ++ D
Sbjct: 101 QDGDEIKIIWD 111
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.8 bits (87), Expect = 0.006
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 238 DKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIK 297
D+ T E E ++K E+ + +Q+ + QE ++ + +LEE +
Sbjct: 78 DRLTQE---PESIRKWREEQRKRLQELDAASKV---------MEQEWREKAKKDLEEWNQ 125
Query: 298 KYQDQVTKNKE 308
+ +QV KNK
Sbjct: 126 RQSEQVEKNKI 136
Score = 35.5 bits (81), Expect = 0.041
Identities = 14/87 (16%), Positives = 38/87 (43%), Gaps = 16/87 (18%)
Query: 608 SQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVIKDYQNVLP 667
+L ++I+K++EE K ++ L S+ E + E+ +K ++++
Sbjct: 78 DRLTQEPESIRKWREEQRK---RLQELDAA---SKVMEQEWREKAKK---DLEEWN---- 124
Query: 668 SIVESMNNTKDKPQDSEQSIEEEITQQ 694
+ + +K + + + ++ QQ
Sbjct: 125 ---QRQSEQVEKNKINNRIADKAFYQQ 148
Score = 32.1 bits (72), Expect = 0.51
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 13/71 (18%)
Query: 286 DRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFT 345
DR E E I+K++ +E + +L S Q +A+K L+ +
Sbjct: 78 DRLTQE-PESIRKWR------EEQRKRLQEL----DAASK--VMEQEWREKAKKDLEEWN 124
Query: 346 LKDNLMHDKLK 356
+ + +K K
Sbjct: 125 QRQSEQVEKNK 135
Score = 29.7 bits (66), Expect = 3.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 420 EDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQ 459
E EK KDL E + Q E +I NR ++ AF +Q
Sbjct: 111 EWREKAKKDLEEW-NQRQSEQVEKNKINNRIADK-AFYQQ 148
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 38.3 bits (88), Expect = 0.010
Identities = 29/223 (13%), Positives = 69/223 (30%), Gaps = 23/223 (10%)
Query: 563 KNCLVKNEKWVINLQEQFSLLEKSKETWVSLKLNSAESQSSASLQSQLNDALDNIKKYKE 622
K K ++ +E +K+ A + S+ ++ + E
Sbjct: 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAH------HAACKEEKLAISREANSKADPSLNPE 192
Query: 623 EHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVIKDYQNVLPSIVESMNNTKDKPQD 682
+ K+ +IE K+ + ++ K L+E ++ Y + + E
Sbjct: 193 QLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGT---PQYMENMEQVFEQC--------- 240
Query: 683 SEQSIEEE---ITQQSLNPLSSELDETIHKNVESVTSNMENDKSNEDDNSSVQSTDEVKD 739
Q EE+ ++ L + LD + +++ ++E D ++
Sbjct: 241 --QQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDLRWFRANHG 298
Query: 740 TEEGPHTPSLVDKSEDTISVTTLVNVNTESSEGDLSPIDPPES 782
+ P + S D + + L+ I+
Sbjct: 299 PGMAMNWPQFEEWSADLNRTLSRREKKKATDGVTLTGINQTGD 341
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 38.4 bits (88), Expect = 0.011
Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 28/168 (16%)
Query: 609 QLNDALDNIKKYKEEHSKMTME----IESLKEKLKFSQSKENDLLEE-YEKLKLVIKDYQ 663
+ + + ++ E + L + N + + Y LK I+ Q
Sbjct: 315 GVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQ 374
Query: 664 NVLPSIVESMNNTKDKPQDSEQSIEEEITQQSLNPLSSELDETIHKNVESVTSNMENDKS 723
N + + + T L+ L S S ++ S
Sbjct: 375 N--------------QLVWVSEGKADGATSDDLDLHDDRL---------SYLSAPGSEYS 411
Query: 724 NEDDNSSVQSTDEVKDTEEGPHTPSLVDKSEDTISVTTLVNVNTESSE 771
+S S E DTE G +T +D++ + T + T SSE
Sbjct: 412 MYSTDSRHTSDYEDTDTEGGAYTDQELDETLNDEVGTPPESAITRSSE 459
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 37.8 bits (88), Expect = 0.013
Identities = 27/191 (14%), Positives = 59/191 (30%), Gaps = 35/191 (18%)
Query: 505 EEKTVAPNQKDVNIIDVSNQYNSEKDFVSINKEIEESSRKI-----------------DD 547
+ + + + Q K F ++ E R I D
Sbjct: 71 LNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKD 130
Query: 548 INAEITKCTNELVDAKNCLV----------KNEKWVINLQEQFSLLEKSKETWVSLKLNS 597
+ + + N L+ AKN LV ++ + + E+ S + K+ + LK
Sbjct: 131 YSIFL-ENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKI 189
Query: 598 AE-SQSSASLQSQLNDALDNIKKYKEEHSKMTM------EIESLKEKLKFSQSKENDLLE 650
+ S+S+ +K YK ++ + + + + ++ L
Sbjct: 190 EKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKA 249
Query: 651 EYEKLKLVIKD 661
E +K+
Sbjct: 250 EEKKILNQFLK 260
Score = 29.7 bits (67), Expect = 4.9
Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 9/149 (6%)
Query: 171 ENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRD 230
+ K + I L+ LI+ L +E A + ++ +
Sbjct: 118 SYKIDGKTVSYKDYSIFLENE-----NILIKAKNFLVFQGDVEQIAAQSPVELS--RMFE 170
Query: 231 EIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRD 290
E+ + K YE +LKE ++K+ E ++ + +L ++ + R
Sbjct: 171 EVSGSIQYKKEYE-ELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRG-S 228
Query: 291 ELEEIIKKYQDQVTKNKEFESTIDQLLNS 319
+E +++ + ++ ++ ++LN
Sbjct: 229 RYDEAEGRFEVINNETEQLKAEEKKILNQ 257
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 37.9 bits (87), Expect = 0.018
Identities = 40/279 (14%), Positives = 98/279 (35%), Gaps = 12/279 (4%)
Query: 529 KDFVSINKEIEESSRKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKE 588
KDF+S NKE+ + + AE N + +K +L++ E ++
Sbjct: 580 KDFLSSNKELAGKALNFNKAVAEAKSTGNYD--------EVKKAQKDLEKSLRKREHLEK 631
Query: 589 TWVSLKLNSAESQSSASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDL 648
+ + +++ ++Q N D I + + + + LK + +L
Sbjct: 632 EVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKR---EL 688
Query: 649 LEEYEKLKLVIKDYQNVLPSIVESMNNTKDKPQDSEQSIEEEITQQSLNPLSSELDETIH 708
++ EK+ +KD+ N K +++ ++++ + +NP E ++
Sbjct: 689 SDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLN 748
Query: 709 KNVESVTSNMENDKSNEDDNSSVQSTDEVKDTEEGPHTPSLVDKSEDTISVTTLVNVNTE 768
+ + D S S + VKD VD +SV + +
Sbjct: 749 AALNEFKNGKNKDFSKVTQAKS-DLENSVKDVIINQKVTDKVDNLNQAVSVAKAMGDFSR 807
Query: 769 SSEGDLSPIDPPESVIALINDDDTSDSSSEMTDSSTLIR 807
+ + + +A + ++ + ++ ++
Sbjct: 808 VEQVLADLKNFSKEQLAQQAQKNEDFNTGKNSELYQSVK 846
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2
Length = 182
Score = 36.4 bits (83), Expect = 0.021
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 20/71 (28%)
Query: 56 LSRNHALIWYYN---------------GKFYLQDTKSSNGTFVNNQRLSKTNEESAPHEL 100
LSR H I+ + T +N +++NN R+ + L
Sbjct: 70 LSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNVSYLNNNRMIQGT----KFLL 124
Query: 101 CSGDVVQFGVD 111
GD ++ D
Sbjct: 125 QDGDEIKIIWD 135
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 37.2 bits (85), Expect = 0.023
Identities = 18/177 (10%), Positives = 60/177 (33%)
Query: 159 QLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAA 218
+L T Q+ + ++ L + + ++ K A + L + + S
Sbjct: 222 RLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEI 281
Query: 219 YSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENEC 278
S ++ + + ++ + EV K + + + + + + + +
Sbjct: 282 QSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKW 341
Query: 279 SNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETL 335
+++L+ L+E + + ++F + + + Q K + + +
Sbjct: 342 DKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQIT 398
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 36.7 bits (84), Expect = 0.039
Identities = 52/346 (15%), Positives = 119/346 (34%), Gaps = 30/346 (8%)
Query: 244 NQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQV 303
+ ++ M + +++ Q+ ++ + ENE LQ E I +YQ+ +
Sbjct: 1 SPAGVLVDAMSQKHLQINQRFEELRLITQDTENELKKLQ-------QTQEYFIIQYQESL 53
Query: 304 TKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNL--MHDKLKNYYMN 361
+F + L++ Q L+ Q +A TL+ + +K +
Sbjct: 54 RIQAQFAQLGQLNPQERMSRETALQQKQVS-LETWLQREAQTLQQYRVELAEKHQKTLQL 112
Query: 362 FHIIKEKMTNIKNELGLETKVDQNILVKYFDDVHQILTQFDEYFLRFNESESSGLNSIED 421
+ + + +EL ++ K Q + + D + + +
Sbjct: 113 LRKQQTII--LDDEL-IQWKRRQQL----AGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQ 165
Query: 422 IEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEKLKQT 481
I + + L +QL L E+ + ++ L S ++ +E Q ++ +T
Sbjct: 166 IRRA-EHLCQQLPIPGPVEEMLAEVNATITDIISALVTSTFI-------IEKQPPQVLKT 217
Query: 482 YNSDCYENE-KFGKAYNCDTLLINEEKTVAPNQKDVNIIDVSNQYNSEKDFVSINKEIEE 540
G N + T+ Q+ +++ N N + N + E
Sbjct: 218 QTKFAATVRLLVGGKLNVHMNPPQVKATIISEQQAKSLLKNENTRNECSGEILNNCCVME 277
Query: 541 SSRKIDDINAE---ITKCTNELVDAKNCL-VKNEKWVINLQEQFSL 582
+ ++A ++ + D + V EK+ + + QFS+
Sbjct: 278 YHQATGTLSAHFRNMSLKRIKRADRRGAESVTEEKFTVLFESQFSV 323
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 36.0 bits (82), Expect = 0.060
Identities = 25/190 (13%), Positives = 62/190 (32%), Gaps = 3/190 (1%)
Query: 154 LEELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLE 213
++ L Q+ + + L + + ++ K A + L +
Sbjct: 456 CDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVH 515
Query: 214 SQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVN 273
+ + ++ + + +++ EV K + V + T
Sbjct: 516 TIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQE 575
Query: 274 IENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYE 333
I + ++++L+ R L E + Q K+F + + + Q K + ++ E
Sbjct: 576 INGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIE 635
Query: 334 ---TLQAQKQ 340
TL+ Q
Sbjct: 636 MHGTLEDQLN 645
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 35.1 bits (80), Expect = 0.077
Identities = 23/188 (12%), Positives = 63/188 (33%), Gaps = 11/188 (5%)
Query: 245 QLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVT 304
+ E + + ++ + ERK E Q+ L+ +LE +K++
Sbjct: 87 LVAENLSVRVCLELTKYSQEMKQERK--MHFQEGRRAQQQLENGFKQLENSKRKFER--- 141
Query: 305 KNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHDKLKNY-YMNFH 363
+E E +Q+ + T ++ QA + N +L+ + H
Sbjct: 142 DCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAH 201
Query: 364 IIKEKMTNIKNEL-GLETKVDQ---NILVKYFDDVHQILTQFDEYFLRFNESESSGLNSI 419
+M I ++L ++ + + +++ + + ++ ++
Sbjct: 202 FYFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVPIIAKCLEGMKVA-ANAVDPK 260
Query: 420 EDIEKVTK 427
D + +
Sbjct: 261 NDSHVLIE 268
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 34.7 bits (79), Expect = 0.13
Identities = 22/188 (11%), Positives = 64/188 (34%), Gaps = 11/188 (5%)
Query: 245 QLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVT 304
+ E M + + + ERK + ++ Q+ ++ +LE ++++
Sbjct: 94 VISENMASQIIVDLARYVQELKQERK--SNFHDGRKAQQHIETCWKQLESSKRRFE---R 148
Query: 305 KNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHDKLKNY-YMNFH 363
KE + + + + T ++ QAQ + L+ + +
Sbjct: 149 DCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHE 208
Query: 364 IIKEKMTNIKNEL-GLETKVDQ---NILVKYFDDVHQILTQFDEYFLRFNESESSGLNSI 419
+ NI ++ +E + + Y + Q++ + ++ + ++
Sbjct: 209 YYHTHIPNIFQKIQEMEERRIVRMGESMKTYAEVDRQVIPIIGKCLDGIVKA-AESIDQK 267
Query: 420 EDIEKVTK 427
D + V +
Sbjct: 268 NDSQLVIE 275
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain,
BRCT domain, phosphoprotein binding, phosp binding, DNA
repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe}
PDB: 3hue_A* 3i0m_A* 3i0n_A*
Length = 325
Score = 34.5 bits (78), Expect = 0.15
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 18/87 (20%)
Query: 35 IGRCIARAKVAPSNGIFDCKVLSRNHALIWYYN-----------GKFYLQDTKSSNGTFV 83
+GR S+ K +S+ HA +F ++D + GT V
Sbjct: 25 VGRN---VSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTKV 81
Query: 84 NNQRLSKTNEESAPHELCSGDVVQFGV 110
N + + + + + +Q G
Sbjct: 82 NEKVVGQNGDSYKEKD----LKIQLGK 104
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump,
subunit I/A, V-ATPase, proton; HET: NHE; 2.64A
{Meiothermus ruber}
Length = 357
Score = 34.3 bits (78), Expect = 0.16
Identities = 35/327 (10%), Positives = 89/327 (27%), Gaps = 45/327 (13%)
Query: 362 FHIIKEKMTNIKNELGLETKVDQNILVKYFDDVHQILTQFDEYFLRFNESESSGLNSIED 421
HI + + + + ++ L ++ V Q L S S+E+
Sbjct: 39 VHI--DPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLATVPSSKPFTGSLEE 96
Query: 422 IEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEKLKQT 481
E V + + + +E +L+E + E E K+ L L++ +
Sbjct: 97 AEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAE--------KLAALAHGLDESPRL 148
Query: 482 YNSDCYENEKFGKAYNCDTLLINEEKTVAPNQKDVNIIDVSNQYNSEKDFVSINKEIEES 541
K + + K + D +++ N V + + E+
Sbjct: 149 GVIPFL----VAKPEELEAV----RKALQEALADRFVLEAEPLENQLAALVVVKRSELEA 200
Query: 542 SRKI-DDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKETWVSLKLNSAES 600
+R + + ++E+ L +
Sbjct: 201 ARSSLSRLGLAELRFPGAYGAMPLGKAAAR-----MKERARLAPEELV------------ 243
Query: 601 QSSASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLE------EYEK 654
+ ++ + + + E+ K + K L K
Sbjct: 244 GIREEVARLSRESGEALIALWT---RAKDEVARYKAVADMAAGKYGAALMGWVPQKAKGK 300
Query: 655 LKLVIKDYQNVLPSIVESMNNTKDKPQ 681
++ + ++ + E ++ + Q
Sbjct: 301 VEEALGRLRDQIVYTFEPVDEHHESHQ 327
>2g1l_A Kinesin-like protein KIF1C; transport, FHA domain, structural
genomics consortium, kines transport protein; 2.60A
{Homo sapiens} SCOP: b.26.1.2
Length = 104
Score = 32.3 bits (73), Expect = 0.18
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 57 SRNHALIWYYNGK----FYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
H L + T+VN + +++ P L SG+ + G
Sbjct: 45 REQHCLFRSIPQPDGEVVVTLEPCEGAETYVNGKLVTE------PLVLKSGNRIVMG 95
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 33.2 bits (75), Expect = 0.18
Identities = 21/138 (15%), Positives = 51/138 (36%)
Query: 529 KDFVSINKEIEESSRKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKE 588
+++ ++ SR+ D + E T+ + EL + + + + +EQ EKS +
Sbjct: 17 AQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSK 76
Query: 589 TWVSLKLNSAESQSSASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDL 648
++ + + I + E +K+ E+ + + + N L
Sbjct: 77 EYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSL 136
Query: 649 LEEYEKLKLVIKDYQNVL 666
+ +L+ + Y L
Sbjct: 137 KPDLMQLRKIRDQYLVWL 154
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 33.5 bits (76), Expect = 0.22
Identities = 20/151 (13%), Positives = 51/151 (33%), Gaps = 5/151 (3%)
Query: 545 IDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKETWVSLKLNSAESQSSA 604
I ++ + K + + V +Q L+KSKE + + + +
Sbjct: 100 IKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEG 159
Query: 605 SLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYE-----KLKLVI 659
+ Q ++ A KK + + + K + ++ ++ E +K +I
Sbjct: 160 ATQREIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIHIKEII 219
Query: 660 KDYQNVLPSIVESMNNTKDKPQDSEQSIEEE 690
N + I + ++ ++ + E
Sbjct: 220 GSLSNAIKEIHLQIGQVHEEFINNMANTTVE 250
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.36
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 128 ANLKLFLPDGKEA---KAS 143
A+LKL+ D A KA+
Sbjct: 27 ASLKLYADDSAPALAIKAT 45
Score = 31.8 bits (71), Expect = 0.49
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 9/37 (24%)
Query: 175 KNKLSKLQHIVIDLKKAADVSWKAL-IQEDRLLSRVE 210
K L KLQ LK AD S AL I+ + +E
Sbjct: 19 KQALKKLQA---SLKLYADDSAPALAIK-----ATME 47
Score = 30.7 bits (68), Expect = 1.2
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 584 EKS--KETWVSLKLNSAESQSSASLQSQL 610
EK K+ SLKL + +S + ++++ +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
3fik_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O*
3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M
1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O 2i2v_O ...
Length = 116
Score = 31.0 bits (71), Expect = 0.58
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 17 AERKLILENTANKNAAVKIGRCIA-RAKVAPSNGI----FD 52
L+ T NK+AA +G+ +A RA GI FD
Sbjct: 55 KAIAEQLKYTGNKDAAAAVGKAVAERALEK---GIKDVSFD 92
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 32.7 bits (75), Expect = 0.69
Identities = 33/290 (11%), Positives = 99/290 (34%), Gaps = 41/290 (14%)
Query: 169 QRENMLKNKLSKLQHIV-IDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDK 227
RE L ++ +K ++ + +A ++ +E ++S + A+ K + +
Sbjct: 757 AREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAH-KEYKKTE 815
Query: 228 LRDEIKLLHRDKSTYEN-QLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELL- 285
+ + + ++ Y + Q K + K + + +E E L
Sbjct: 816 KPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALR 875
Query: 286 --DRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDA 343
+ + ++ +++KY + K + + +T L + E +++ +Q K L+A
Sbjct: 876 IELKRQKKIAVLLQKYNRILKKLENWATTKSVYL-GSNETGDSITAVQ----AKLKNLEA 930
Query: 344 FTLKDNLMHDKLKNYYMNFHIIKEKMTNIKNELGLETKVDQNILVKYFDDVHQILTQFDE 403
F + + + +++ + L T+++ N + + + Q
Sbjct: 931 FDGECQSL-------------EGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQ--- 974
Query: 404 YFLRFNESESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQ 453
++ + + L E ++++ + +
Sbjct: 975 --------------QWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHHH 1010
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 32.0 bits (73), Expect = 0.88
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 581 SLLEKSKETWVSLKLNSAESQSSASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKF 640
++ EK K+ ++S + E + ASL + + + ++ M +E L+ +L+
Sbjct: 135 AIREKMKKNYMSNPSYNYEIVNRASLAAG---PMVKWAIAQLNYADMLKRVEPLRNELQK 191
Query: 641 SQSKENDLLEEYEKLKLVI 659
+ D ++ E L L +
Sbjct: 192 LEDDAKDNQQKLEALLLQV 210
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 31.4 bits (72), Expect = 1.5
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 810 KPKPVSVPTDASLVKPQSTTGCQTSD 835
K KP P DA +V+P + C TSD
Sbjct: 17 KEKPAPGPFDA-IVRPLAVAPC-TSD 40
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 31.5 bits (70), Expect = 1.5
Identities = 50/295 (16%), Positives = 97/295 (32%), Gaps = 26/295 (8%)
Query: 351 MHDKLKNYYMNFHIIKEKMTNIKNELGLETKVDQNILVKYFDDVHQILTQFDEYFLRFNE 410
+++N I + ++ L T+ Q +L + D + + F + +
Sbjct: 318 ALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFK-DV 376
Query: 411 SESSGLNSIEDIEKVTKDLREQLHTAQEEYTS--LQEIVNRNEEQLAFLEQSKYLHLDKI 468
+EK D +Q A + S LQ I + EE++ SK
Sbjct: 377 DHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSK------P 430
Query: 469 GGLELQLEKLKQTYNSDCYENEKFGKAYNCDTLLINEEKTVAPNQKDVNIIDVSNQYNSE 528
GG L ++KL+ E K +A + ++++ ++
Sbjct: 431 GGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQ-----------TD 479
Query: 529 KDFVSINKEIEESSRKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKE 588
+ KEIE K + A + + + E+ + QE L + E
Sbjct: 480 QTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKER---SYQEHLKQLTEKME 536
Query: 589 TWVSLKLNSAESQSSASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQS 643
L E + LQ Q + +K EI+ L+ K++ ++
Sbjct: 537 NDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKN---EIQDLQTKMRRRKA 588
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 29.5 bits (66), Expect = 1.9
Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 226 DKLRDEIKLLHRDKSTYENQLKEV---MKKMLAEKVEVMQKCQDTERKLVNIENECSNLQ 282
+++E L E + KE+ M +L EK ++ + Q + L + E C L
Sbjct: 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLI 75
Query: 283 ELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQ 331
+ + +++E+ K+ +D+ N E + +L + E ++ L+
Sbjct: 76 KNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 28.7 bits (64), Expect = 2.2
Identities = 16/91 (17%), Positives = 41/91 (45%)
Query: 243 ENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQ 302
QL+ +K++ E+ ++Q+ +D E+ + +Q +R E + ++Y +
Sbjct: 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEF 65
Query: 303 VTKNKEFESTIDQLLNSNQEKSNTLEKLQYE 333
+ E + + + N + L+KL+ +
Sbjct: 66 KRQQLELDDELKSVENQMRYAQMQLDKLKKK 96
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 30.5 bits (68), Expect = 2.3
Identities = 25/181 (13%), Positives = 48/181 (26%), Gaps = 4/181 (2%)
Query: 282 QELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQL 341
++L +L +I++ Q E + Q L + K QY L
Sbjct: 93 EDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQ 152
Query: 342 DAFTLKDNLMHDKLKNYYMNFHIIKEKMTNIKNELGLETKVDQNILVKYF-DDVHQILTQ 400
++ + K+ N L + Q + + +L
Sbjct: 153 AKRKYQEASKDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRS 212
Query: 401 FDEYFLRFNESESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQS 460
+ L +I + +D +H E + + E FL Q
Sbjct: 213 LQDLHEEMACILKEILQEYLEISSLVQDEVVAIH---REMAAAAARIQPEAEYQGFLRQY 269
Query: 461 K 461
Sbjct: 270 G 270
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 30.5 bits (68), Expect = 2.4
Identities = 19/139 (13%), Positives = 58/139 (41%)
Query: 604 ASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVIKDYQ 663
+ L +++ I++ +++ K + E+ + + + ++ L + K + ++D
Sbjct: 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN 73
Query: 664 NVLPSIVESMNNTKDKPQDSEQSIEEEITQQSLNPLSSELDETIHKNVESVTSNMENDKS 723
+ SI + M+ K + + +IEE+I ++ N + E++ ++ + K
Sbjct: 74 AKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKE 133
Query: 724 NEDDNSSVQSTDEVKDTEE 742
+ + + + E
Sbjct: 134 MLELEKLALELESLVENEV 152
Score = 29.7 bits (66), Expect = 4.4
Identities = 15/161 (9%), Positives = 53/161 (32%), Gaps = 2/161 (1%)
Query: 252 KMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFES 311
+ E + ++ + L N+ + + +E + + ++ +
Sbjct: 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA 74
Query: 312 TIDQLLNSNQEKSNT--LEKLQYETLQAQKQLDAFTLKDNLMHDKLKNYYMNFHIIKEKM 369
I + E + L L E A+++ + + + +++K +K++M
Sbjct: 75 KIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134
Query: 370 TNIKNELGLETKVDQNILVKYFDDVHQILTQFDEYFLRFNE 410
++ + +N + + I + ++ +
Sbjct: 135 LELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEP 175
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 30.6 bits (68), Expect = 2.9
Identities = 39/277 (14%), Positives = 90/277 (32%), Gaps = 34/277 (12%)
Query: 387 LVKYFDDVHQILTQFDEYFLRFNESESSGLNS--IEDIEKVTKDLREQLHTAQEEYTSLQ 444
K D + L FN++ + ++ ++++K KDL + L + ++
Sbjct: 315 ANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVE 374
Query: 445 EIVNRNEEQLAFLEQSKYLHLDKIGGLELQLEKLKQTYNSDCYENEKFGKAYNCDTLLIN 504
+ + +E + K L + E + +A L
Sbjct: 375 KKLESKSGNKNKMEAKAQANSQKDEIFALINK-----------EANRDARAIAYTQNLKG 423
Query: 505 EEKTVAPNQKDVNIIDVSNQYNSEKDFVSINKEIEESSRKIDDINAEITKCTNELVDAKN 564
++ ++ + ++ KD +K +E + ++ + L +
Sbjct: 424 IKRELSDKLEKIS-----------KDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVK 472
Query: 565 CLVKNEKW---VINLQEQFSLLEKSK----ETWVSLKLNSAESQSSASLQSQLNDALDNI 617
L N +W V NL + + K K + S + ++ D +DN+
Sbjct: 473 DLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVTDKVDNL 532
Query: 618 KKYKEEHSKMT--MEIESLKEKLK-FSQSKENDLLEE 651
+ M +E + LK FS+ + ++
Sbjct: 533 NQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQK 569
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 30.2 bits (67), Expect = 3.1
Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 23/161 (14%)
Query: 563 KNCLVKNEKWVINLQEQFSLLEKSKETWVSLKLNSAESQSSASLQSQLNDALDNIKKYKE 622
K K ++ +E +K+ A + S+ ++ + E
Sbjct: 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAH------HAACKEEKLAISREANSKADPSLNPE 192
Query: 623 EHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVIKDYQNVLPSIVESMNNTKDKPQD 682
+ K+ +IE K+ + ++ K L+E ++ Y + + E
Sbjct: 193 QLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGT---PQYMENMEQVFEQC--------- 240
Query: 683 SEQSIEEE---ITQQSLNPLSSELDETIHKNVESVTSNMEN 720
Q EE+ ++ L + LD + +++ ++E
Sbjct: 241 --QQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQ 279
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 30.4 bits (68), Expect = 3.1
Identities = 11/136 (8%), Positives = 39/136 (28%), Gaps = 6/136 (4%)
Query: 353 DKLKNYYMNFHIIKEKMTNIKNELGLETKVDQNILVKYFDDVHQILTQFDEYFLRFNESE 412
L + + + + + + + + + Q + + +E
Sbjct: 89 TTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYN 148
Query: 413 SSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGGLE 472
+ +E KD + + L+ +++ +++ LE + D
Sbjct: 149 TE----MELHYNYIKDNLDNNIPSS--LRVLRAVIDSLHKKIQKLENAIATQTDYCRSPC 202
Query: 473 LQLEKLKQTYNSDCYE 488
+ + +C +
Sbjct: 203 VASCNIPVVSGRECED 218
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 30.2 bits (68), Expect = 3.3
Identities = 17/131 (12%), Positives = 51/131 (38%), Gaps = 7/131 (5%)
Query: 244 NQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQV 303
++L ++K+ + + K+ +N C + + + R +++ + + K+
Sbjct: 194 SELPTEVQKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVK 253
Query: 304 TKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHDKLKNYYMNFH 363
K + I + +++ + ++ +E K+ A+ ++ K
Sbjct: 254 NAEKVQTAGIVTPYDILKQELDEFNEVAFENE-INKRDGAYIELCVCSVEEAKKN----- 307
Query: 364 IIKEKMTNIKN 374
+E +TN+ N
Sbjct: 308 -TQEVVTNVDN 317
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 30.4 bits (68), Expect = 3.4
Identities = 10/137 (7%), Positives = 35/137 (25%), Gaps = 14/137 (10%)
Query: 534 INKEIEESSRKIDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKETWVSL 593
I KE+ +++ + I E+ + + ++ + + +
Sbjct: 614 IEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEE 673
Query: 594 KLNSAESQSSASLQSQLNDA------------LDNIKKYKEEHSKMTMEIESLKEKLKFS 641
+ + + +K ++ + E+E+L +
Sbjct: 674 SSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKD 733
Query: 642 QSKE--NDLLEEYEKLK 656
Y++
Sbjct: 734 IWNTDLKAFEVGYQEFL 750
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 30.3 bits (69), Expect = 3.5
Identities = 6/58 (10%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 605 SLQSQLNDALDNI---KKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVI 659
L+ + N I +K E ++ + + +++ +++ +L ++ + +
Sbjct: 49 RLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRL 106
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings,
fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus
gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Length = 491
Score = 29.9 bits (66), Expect = 3.8
Identities = 22/191 (11%), Positives = 71/191 (37%), Gaps = 8/191 (4%)
Query: 596 NSAESQSSASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKL 655
N ++ L+ L A + Y +++ I +LK+++ ++ L ++
Sbjct: 85 NRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQ 144
Query: 656 KLVIKDYQNVLPSIVESMNNTKDKPQDSEQSIEEEITQQSLNPLSSELDETIHKNVESV- 714
+ +K + + + + + +S + ++ ++ + + L + ++
Sbjct: 145 VVEMKRLEVDIDIKIRACKGS------CARSFDYQVDKEGYDNIQKHLTQASSIDMHPDF 198
Query: 715 -TSNMENDKSNEDDNSSVQSTDEVKDTEEGPHTPSLVDKSEDTISVTTLVNVNTESSEGD 773
T+ + K +S+V ++K + E + + + + + + + GD
Sbjct: 199 QTTTLSTLKMRPLKDSNVPEHFKLKPSPEMQAMSAFNNIKQMQVVLERPETDHVAEARGD 258
Query: 774 LSPIDPPESVI 784
SP + +
Sbjct: 259 SSPSHTGKLIT 269
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus
stearothermophilus} SCOP: c.55.4.1
Length = 120
Score = 28.3 bits (64), Expect = 4.0
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 18 ERKLILENTANKNAAVKIGRCIA-RAKVAPSNGI----FD 52
+++ L++T N AA K+G +A RA GI FD
Sbjct: 60 DKEFGLDSTNNIEAAKKVGELVAKRALEK---GIKQVVFD 96
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 29.8 bits (68), Expect = 4.5
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 605 SLQSQLNDALDNI---KKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVI 659
+L+S+ N I K+ ++ +++ ++ LKE++ + + + EE + L I
Sbjct: 48 ALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWI 105
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.40A {Homo sapiens}
Length = 53
Score = 26.9 bits (59), Expect = 4.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 611 NDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVIKDYQ 663
N ALD +K + + EIE L+ +L + K ++EE +KLK + Y+
Sbjct: 1 NSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYE 53
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain,
transcription; 2.25A {Enterococcus faecalis} SCOP:
a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A
2grl_A 2grm_A
Length = 317
Score = 29.6 bits (66), Expect = 5.0
Identities = 38/271 (14%), Positives = 80/271 (29%), Gaps = 24/271 (8%)
Query: 278 CSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQA 337
L + +R EI+ + + E+ ++LL S + L ++ ++
Sbjct: 44 VEELSKFSERLGVNFFEIL--NRAGMNTKSVNETGKEKLLISKIFTNPDLFDKNFQRIEP 101
Query: 338 QKQLDAFTLKDNLMHDKLKNYYMNFHIIKEKMTNIKNELGLETKVDQNILVKYFDDVHQI 397
++ Y+ + + E+ K + L +D
Sbjct: 102 KR-------------LTSLQYFSIYLGYISIAHHYNIEVPTFNKTITSDLKHLYDKR--- 145
Query: 398 LTQFDEYFLRFNESESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFL 457
T F S + E++ + K + + + ++Y + V +N + +
Sbjct: 146 -TTFFGIDCEI-VSNLLNVLPYEEVSSIIKPMYPIVDSFGKDYDLTIQTVLKNALTI-SI 202
Query: 458 EQSKYLHLDKIGGLELQLEKLKQTYNSDCYENEKFGKAYNCDTLLINEEKTVAPNQKDVN 517
Q E LK N Y +K + VN
Sbjct: 203 MNRNLKEAQY---YINQFEHLKTIKNISINGYYDLEINYLKQIYQFLTDKNIDSYLNAVN 259
Query: 518 IIDVSNQYNSEKDFVSINKEIEESSRKIDDI 548
II++ E S+ +E+ + S K
Sbjct: 260 IINIFKIIGKEDIHRSLVEELTKISAKEKFT 290
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 29.6 bits (66), Expect = 5.3
Identities = 24/196 (12%), Positives = 56/196 (28%), Gaps = 11/196 (5%)
Query: 154 LEELYQLNTCIQEALQRENMLKNKLSKLQ---------HIVIDLKKAADVSWKALIQEDR 204
LE +Y L +E E + K H+ + K D + +
Sbjct: 106 LENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQE 165
Query: 205 LLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKC 264
+ V +L + + + L+ + + ++LA ++ +
Sbjct: 166 RVDNVNAFIERLID-AGHSEAATIAEWKDGLNEMWADLLELIDTR-MQLLAASYDLHRYF 223
Query: 265 QDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKS 324
L I+ + L E + + E + + + Q +
Sbjct: 224 YTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQ 283
Query: 325 NTLEKLQYETLQAQKQ 340
+ E +Q ++Q
Sbjct: 284 TAYAGEKAEAIQNKEQ 299
Score = 29.2 bits (65), Expect = 5.9
Identities = 22/271 (8%), Positives = 72/271 (26%), Gaps = 26/271 (9%)
Query: 227 KLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLD 286
+ R Y +K++ + + + R ++ + L+++ +
Sbjct: 41 VMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAE 100
Query: 287 RNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQ----YETLQAQKQLD 342
+ +LE + +Q + D L EK + ++ + +
Sbjct: 101 ERKRKLENMYHLFQ--------LKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRD-- 150
Query: 343 AFTLKDNLMHDKLKNYYMNFHIIK-EKMTNIKNELGLETKVDQNILVKYFDDVHQILTQF 401
+ + + L + + ++ D ++++
Sbjct: 151 --------KFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADL 202
Query: 402 DEYFL---RFNESESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLE 458
E + + ++ + E+ E+ E
Sbjct: 203 LELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFE 262
Query: 459 QSKYLHLDKIGGLELQLEKLKQTYNSDCYEN 489
+ +L ++ + +L+ Y + E
Sbjct: 263 RDVHLLGVQVQQFQDVATRLQTAYAGEKAEA 293
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 28.9 bits (64), Expect = 5.5
Identities = 23/151 (15%), Positives = 56/151 (37%), Gaps = 3/151 (1%)
Query: 226 DKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELL 285
L++E Y+ +E +++ + + + E +LV E +LQ
Sbjct: 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADN 65
Query: 286 DRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFT 345
R + E+E + +K + Q + + L + + E+L + ++ D
Sbjct: 66 QRLKYEVEALKEKLEHQ---YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122
Query: 346 LKDNLMHDKLKNYYMNFHIIKEKMTNIKNEL 376
L+++ + E+ +++EL
Sbjct: 123 RAKRATIMSLEDFEQRLNQAIERNAFLESEL 153
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 28.4 bits (63), Expect = 5.9
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 245 QLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVT 304
+L + E + + + E + E + + L+E L + L+ + + +
Sbjct: 11 ELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQ 70
Query: 305 KNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHDKLKN 357
K ++E I L + +E E + + +K +D L+D L KLK
Sbjct: 71 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSID--DLEDELYAQKLKY 121
Score = 28.4 bits (63), Expect = 6.4
Identities = 19/89 (21%), Positives = 39/89 (43%)
Query: 243 ENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQ 302
+ + K E + K ++ E + E + L++ +D DEL KY+
Sbjct: 65 AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI 124
Query: 303 VTKNKEFESTIDQLLNSNQEKSNTLEKLQ 331
+ K+ E +++LL+ N N + +L+
Sbjct: 125 SEEMKQLEDKVEELLSKNYHLENEVARLK 153
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 29.4 bits (67), Expect = 5.9
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 605 SLQSQLNDALDNIKKYK-EEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVI 659
+Q++ N + K EE + ++L E+ K + + E L L +
Sbjct: 46 EVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQV 101
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil,
protein transpor; 2.10A {Salmonella typhimurium}
Length = 150
Score = 28.3 bits (63), Expect = 6.7
Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 18/129 (13%)
Query: 226 DKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELL 285
D + + R E QLK ++ + E + N Q+ +
Sbjct: 22 DDAARLLGEMRRGCQQAEEQLKM----LIDYQNEYRSNLNTDMGNGIASN-RWINYQQFI 76
Query: 286 DRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKL---------QYETLQ 336
LE+ I++++ Q+T+ + + +++ + L E
Sbjct: 77 QT----LEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAAALLAENRM 132
Query: 337 AQKQLDAFT 345
QK++D F
Sbjct: 133 DQKKMDEFA 141
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 29.1 bits (66), Expect = 7.4
Identities = 6/55 (10%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 607 QSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVIKD 661
+++ + + + KE + + E + +L+ + ++ L++ + L +
Sbjct: 29 YAKIEEIENITNRIKETQEFIELLREEGENELEIEKYEKE--LDQLYQELLFLLS 81
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 29.1 bits (65), Expect = 7.6
Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 17/143 (11%)
Query: 695 SLNPLSSELDETIHKNVESVTSNMENDKSNEDDNSSVQSTDEVKDTEEGPHTPSLVDKSE 754
SLN SELD+ I +N V + E +K D + +++ + P SL
Sbjct: 52 SLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVR-GILRNAKLKPVYDSL----- 105
Query: 755 DTISVTTLVNVNTESSEGDLSPIDPPESVIALINDDDTSDSSSEMTDSSTLIRIRKPKPV 814
D + L+N+ + E ++ + + ++ +++ + S
Sbjct: 106 DAVRRAALINMVFQMGETGVAGFT---NSLRMLQQKRWDEAAVNLAKSRWY--------N 154
Query: 815 SVPTDASLVKPQSTTGCQTSDEF 837
P A V TG +
Sbjct: 155 QTPNRAKRVITTFRTGTWDAYAA 177
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA
complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Length = 438
Score = 29.2 bits (65), Expect = 7.8
Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 11/208 (5%)
Query: 138 KEAKASPTSMLISSMPLEELYQLNTCIQEALQREN--MLKNKLSKLQHIVIDLKKAADVS 195
K++K+ + + ++E + + E E+ L +L +L+ AD
Sbjct: 2 KKSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEPDPELLASEPELEDLADPL 61
Query: 196 WKALIQEDRLLSRVEFLESQLAAYSKSF--TDDKLRDEIKLLHRDKSTYENQLKEVMKKM 253
E LL LE + S T D +R + + + + ++ +K+
Sbjct: 62 DLEGPLEADLLPEEGLLEEEEEELSLPKVSTSDPVRQYLHEIGQVPLLTLEEEIDLARKV 121
Query: 254 LAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTI 313
+ + + T I R + K V + +
Sbjct: 122 EEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEE-------V 174
Query: 314 DQLLNSNQEKSNTLEKLQYETLQAQKQL 341
D L S ++ + E A++ L
Sbjct: 175 DGKLKSLPKELKRYLHIAREGEAARQHL 202
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 29.1 bits (66), Expect = 8.3
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 605 SLQSQLNDALDNI---KKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVI 659
+LN I K KE+ + E E L + K KE + + +
Sbjct: 51 EHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQV 108
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 28.7 bits (65), Expect = 9.6
Identities = 16/110 (14%), Positives = 40/110 (36%), Gaps = 14/110 (12%)
Query: 351 MHDKLKNYYMNFHIIKEKMTNIKNELGLETKVDQNILVKY---FDDVHQILTQFDEYFLR 407
++D+L+ + + E +++ + D ++ + + + + EY +
Sbjct: 15 IYDQLQAVEDRYEELGELLSDP------DVVSDTKRFMELSREEANSRETVAVYREY--K 66
Query: 408 FNESESSGLNSIEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFL 457
+ + +L E A+EE + + EE+L FL
Sbjct: 67 QVVQNIADAQEMIKDASGDPELEE---MAKEELKNSKVAKEEYEEKLRFL 113
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 28.7 bits (65), Expect = 9.8
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 22/112 (19%)
Query: 351 MHDKLKNYYMNFHIIKEKMTNIKNELGLETKVDQNILVKY---FDDVHQILTQFDEYFLR 407
+ KL+ + ++ + + +T DQ + + + F ++
Sbjct: 5 IVAKLEALHERHEEVQALLGDA------QTIADQERFRALSREYAQLSDVSRCFTDW--- 55
Query: 408 FNESESSGLNSIEDIEKVTKD--LREQLHTAQEEYTSLQEIVNRNEEQLAFL 457
IE + + D +RE AQ+E +E + E+QL L
Sbjct: 56 -----QQVQEDIETAQMMLDDPEMRE---MAQDELREAKEKSEQLEQQLQVL 99
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae}
Length = 530
Score = 28.6 bits (63), Expect = 9.9
Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 4/107 (3%)
Query: 615 DNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVIKDYQNVLPSIVESMN 674
++I + + ++ + + KLK S++ E +KL +K +P + S+
Sbjct: 428 ESIAEVENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLK----YIPEVSRSLA 483
Query: 675 NTKDKPQDSEQSIEEEITQQSLNPLSSELDETIHKNVESVTSNMEND 721
S + + L L S+ + I+ ++++
Sbjct: 484 TFLASGNKELVSKYQNEISEGLFKLISKKLDLINIEEYRKVYRVDSE 530
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.127 0.344
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,537,311
Number of extensions: 736654
Number of successful extensions: 2269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2041
Number of HSP's successfully gapped: 331
Length of query: 903
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 801
Effective length of database: 3,853,851
Effective search space: 3086934651
Effective search space used: 3086934651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.4 bits)