RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy588
(903 letters)
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 118
Score = 65.0 bits (158), Expect = 3e-13
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 15/107 (14%)
Query: 4 TAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGI-FDCKVLSRNHAL 62
T L P L + + +++GR + N I +S H
Sbjct: 10 TPSLRLVFVKGPREGDALDYKPGST----IRVGR------IVRGNEIAIKDAGISTKHLR 59
Query: 63 IWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
I +G + +QD SSNGT +N+ L L GDV++ G
Sbjct: 60 IESDSGNWVIQDLGSSNGTLLNSNALDPET----SVNLGDGDVIKLG 102
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 127
Score = 60.5 bits (146), Expect = 1e-11
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 17/112 (15%)
Query: 7 LTCRPNSHPFAERKLILENTANKNAAVK----IGRCIARAKVAPSNGIF--DCKVLSRNH 60
+ C P + + + ++K GR P+ + LS H
Sbjct: 8 VICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGR-------NPACDYHLGNISRLSNKH 60
Query: 61 ALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDV 112
I L + S+NGT++N Q++ K ++ L GD + GV V
Sbjct: 61 FQILLGEDGNLLLNDISTNGTWLNGQKVEK----NSNQLLSQGDEITVGVGV 108
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 122
Score = 59.4 bits (143), Expect = 3e-11
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 14/114 (12%)
Query: 3 GTAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGI-FDCKVLSRNHA 61
G++ L + P + + +T++ VK+GR + + +S HA
Sbjct: 2 GSSWLFLEVIAGPAIGLQHAVNSTSSSKLPVKLGR-------VSPSDLALKDSEVSGKHA 54
Query: 62 LIWY--YNGKFYLQDTKSSNGTFVNNQRLSKTN----EESAPHELCSGDVVQFG 109
I + K+ L D S NGT VN+ +S + + P EL S D++ G
Sbjct: 55 QITWNSTKFKWELVDMGSLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLG 108
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 52.9 bits (126), Expect = 7e-09
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 56 LSRNHALIWY-YNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDV 112
+SRNH ++ G++ + D KS NG ++N RL + + GD +Q GV +
Sbjct: 47 ISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLR----VYSIHQGDYIQLGVPL 100
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR,
C-terminal domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 99
Score = 51.5 bits (123), Expect = 1e-08
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 29 KNAAVKIGRCIARAKVAPSNGIF-DCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQR 87
+ AA +IGR N I D +SR+HA+I + + D +SSNG V ++R
Sbjct: 21 QAAATRIGR-------LHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHER 73
Query: 88 LSKTNEESAPHELCSGDVVQFG 109
+ L GD ++
Sbjct: 74 IRS------AVTLNDGDHIRIC 89
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 49.5 bits (117), Expect = 7e-08
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 11/82 (13%)
Query: 35 IGR---CIARAKVAPSNGIFDCKVLSRNHALIWYY----NGKFYLQDTKSSNGTFVNNQR 87
GR C + S+ H I+ N + S NGTFVN +
Sbjct: 24 FGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGTFVNTEL 83
Query: 88 LSKTNEESAPHELCSGDVVQFG 109
+ K L + +
Sbjct: 84 VGKGK----RRPLNNNSEIALS 101
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 46.2 bits (109), Expect = 6e-07
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 14/78 (17%)
Query: 33 VKIGRCIARAKVAPSNGI-FDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSKT 91
GR I V+S+ H I + + L + S+N T VN + +
Sbjct: 25 CLFGR-------GIECDIRIQLPVVSKQHCKIEIHEQEAILHNFSSTNPTQVNGSVIDE- 76
Query: 92 NEESAPHELCSGDVVQFG 109
P L GDV+
Sbjct: 77 -----PVRLKHGDVITII 89
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human
(Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 42.2 bits (98), Expect = 3e-05
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 35 IGRCIARAKVAPSNGIFDCKVLSRNHALIWYY-NGKFYLQDTKSSNGTFVNNQRLSKTNE 93
IGR PSN K++S +H I + S++GT +N ++ K
Sbjct: 28 IGRRRGCDLSFPSN-----KLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINKLKVVK--- 79
Query: 94 ESAPHELCSGDVVQFGVDVIETNRN 118
L +GDV+ E N
Sbjct: 80 -KQTCPLQTGDVIYLVYRKNEPEHN 103
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 107
Score = 40.4 bits (94), Expect = 9e-05
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 56 LSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
+ +H + +G + T+V+ QR+S+ L SG +QFG
Sbjct: 50 IQPHHCDLTNMDGVVTVTPRSMDAETYVDGQRISE------TTMLQSGMRLQFG 97
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 40.0 bits (93), Expect = 1e-04
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 10/58 (17%)
Query: 56 LSRNHALIWYYNGK----FYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
+ H L + T+VN + +++ P L SG+ + G
Sbjct: 42 IREQHCLFRSIPQPDGEVVVTLEPCEGAETYVNGKLVTE------PLVLKSGNRIVMG 93
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 158
Score = 39.8 bits (92), Expect = 3e-04
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 68 GKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDV 112
+ T +N +++NN R+ + L GD ++ D
Sbjct: 73 DDIWYCHT-GTNVSYLNNNRMIQ----GTKFLLQDGDEIKIIWDK 112
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 133
Score = 31.8 bits (72), Expect = 0.14
Identities = 14/127 (11%), Positives = 49/127 (38%), Gaps = 11/127 (8%)
Query: 204 RLLSRVEFLESQLAAYSKSFTD-DKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQ 262
+++++ +SQ+ + E+++L + S + + + +
Sbjct: 5 EIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKA 64
Query: 263 KCQDTERKLVNI------ENECSNLQELLDRNRDELEEIIKKYQDQVTKNKE----FEST 312
+ +DT ++++ + + E + ++ELE ++K + + +
Sbjct: 65 ELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQ 124
Query: 313 IDQLLNS 319
++LL +
Sbjct: 125 AEELLAA 131
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 31.2 bits (70), Expect = 0.57
Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 4/102 (3%)
Query: 291 ELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQA-QKQLDAFTLKDN 349
ELE I ++++ + ID+ ++ +EKS L + + L A Q A +
Sbjct: 11 ELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQLARHPQRP 70
Query: 350 LMHDKLKNYYMN---FHIIKEKMTNIKNELGLETKVDQNILV 388
D ++ + + + G+ + +++
Sbjct: 71 YTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMI 112
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial
{Cow (Bos taurus) [TaxId: 9913]}
Length = 120
Score = 29.0 bits (65), Expect = 0.95
Identities = 11/73 (15%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 567 VKNEKWVINLQEQFSLLEKSKETWVSLKLNSAESQSSASLQSQLNDALDNIKKYKEEHSK 626
V V + +++F+ +LK+ E + +A + ++ + + + ++ +
Sbjct: 57 VAKAGLVDDFEKKFN----------ALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKT 106
Query: 627 MTMEIESLKEKLK 639
E E EK++
Sbjct: 107 RIQEYEKELEKMR 119
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 29.1 bits (65), Expect = 1.4
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 35 IGRCIARA------KVAPSNGIFDCKVLSRNHALIW-YYNGKFYLQDTKSSNGTFVNNQR 87
IGR + RA +V N F + + + +G F + V+ ++
Sbjct: 11 IGRLVLRAALEMGAQVVAVNDPFIA-LEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKK 69
Query: 88 LSKTNEESAPHELCSGDVVQFGVDVI 113
++ N E P + + G + I
Sbjct: 70 ITVFN-EMKPENI---PWSKAGAEYI 91
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 29.6 bits (66), Expect = 1.5
Identities = 14/115 (12%), Positives = 40/115 (34%), Gaps = 3/115 (2%)
Query: 217 AAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIEN 276
K+ + + I R + + + + +C++ + N +
Sbjct: 182 VFKDKTVCKEDDIENIPQFFR---WFSEWGDDYCQDKTKMIETLKVECKEKPCEDDNCKR 238
Query: 277 ECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQ 331
+C++ +E + + ++E + K+YQ+ N + + + EK
Sbjct: 239 KCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCS 293
>d1ss4a_ d.32.1.6 (A:) Hypothetical protein BC1747 {Bacillus cereus
(strain ATCC 14579 / DSM 31) [TaxId: 226900]}
Length = 149
Score = 28.9 bits (63), Expect = 1.6
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 173 MLKNKLSKLQHIVI---DLKKAAD 193
M KNKL ++ ++ I L A
Sbjct: 2 MAKNKLLRMDNVSIVVESLDNAIS 25
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 28.9 bits (64), Expect = 1.8
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 12/86 (13%)
Query: 35 IGRCIARA-------KVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQR 87
IGR + RA +V N + D L H L + + + V N +
Sbjct: 12 IGRNVFRAALKNPDIEVVAVNDLTDANTL--AHLLKYDSVHGRLDAEVSVNGNNLVVNGK 69
Query: 88 LSKTNEESAPHELCSGDVVQFGVDVI 113
E P L G+ GVD++
Sbjct: 70 EIIVKAERDPENLAWGE---IGVDIV 92
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 29.3 bits (65), Expect = 2.1
Identities = 25/217 (11%), Positives = 66/217 (30%), Gaps = 12/217 (5%)
Query: 239 KSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKK 298
+ YE Q+ + ++ E++ +D+ER+ + + S ++ ++ KK
Sbjct: 49 IAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKK 108
Query: 299 YQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHDKLKNY 358
D +N+E S LQ ++++ A +
Sbjct: 109 RDDFCKQNQEASSDR------------CSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQK 156
Query: 359 YMNFHIIKEKMTNIKNELGLETKVDQNILVKYFDDVHQILTQFDEYFLRFNESESSGLNS 418
+ + + + D + Q E ++
Sbjct: 157 LQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESA 216
Query: 419 IEDIEKVTKDLREQLHTAQEEYTSLQEIVNRNEEQLA 455
+ + + R+ +++ S QE + + E++
Sbjct: 217 QASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKME 253
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 28.8 bits (64), Expect = 2.9
Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 250 MKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKYQDQVTKNKEF 309
+ E + C ++ + R++ E + K+Y+ Q +
Sbjct: 184 RDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENA 243
Query: 310 ESTIDQLLNSNQEK--SNTLEKLQYE 333
E+ + ++ + + S L E
Sbjct: 244 ENYLIKISENKNDAKVSLLLNNCDAE 269
>d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga
maritima [TaxId: 2336]}
Length = 193
Score = 28.0 bits (62), Expect = 3.7
Identities = 15/140 (10%), Positives = 44/140 (31%), Gaps = 12/140 (8%)
Query: 235 LHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEE 294
L + KE + +L +++E + +++ + ++ + E
Sbjct: 39 LDEGEIKDAIAFKESVNTLL-KELEEQLQKSLRSDFVISFSSVSFEREDTVI------ER 91
Query: 295 IIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHDK 354
+ + +T + + ++ + EK K + LD + N + K
Sbjct: 92 DFGEEKRSITLD-----ILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLDMK 146
Query: 355 LKNYYMNFHIIKEKMTNIKN 374
+ + I + +
Sbjct: 147 ASKIAIEYTSIVVPLKVYEM 166
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain
{Deinococcus radiodurans [TaxId: 1299]}
Length = 59
Score = 25.7 bits (57), Expect = 4.1
Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 14/68 (20%)
Query: 573 VINLQEQFSLLEKSKETWVSLKLNSAESQSSASLQSQLNDALDNIKKYKEEHSKMTMEIE 632
++ L +++K+ ++ S ++ + Y E +M EI
Sbjct: 5 LVGLAADMDIIKKAG-SFYSYG------------DERIGQGKEKTIAYIAERPEMEQEIR 51
Query: 633 S-LKEKLK 639
+ ++
Sbjct: 52 DRVMAAIR 59
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 28.6 bits (63), Expect = 4.2
Identities = 35/298 (11%), Positives = 84/298 (28%), Gaps = 23/298 (7%)
Query: 34 KIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVN-NQRLSKTN 92
+I R + ++ A W K YL S N + + + +
Sbjct: 460 EIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQH 519
Query: 93 EESAPHELCSGDVVQFGVDVIETNRNTPVTHGCIIANLKLFLPDGKEAKASPTSMLISSM 152
+++ + I + + N+ F P GK K + + ++S
Sbjct: 520 DDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEF 579
Query: 153 PL----EELYQLNTCIQEALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSR 208
+ + + ++ ++ I+ + A+IQE L
Sbjct: 580 YYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGF 639
Query: 209 VEFLESQLAAYSKSFTDDKLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEV-------- 260
F + Y + + E E + ++ E+
Sbjct: 640 PRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLL 699
Query: 261 -MQKCQDTERKLVNIENECSNLQELLDR---------NRDELEEIIKKYQDQVTKNKE 308
M+ T+ + + + + L+ +L+ YQ+ + ++ E
Sbjct: 700 GMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAE 757
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 26.4 bits (58), Expect = 4.8
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 604 ASLQSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDL 648
A L A I + E K+ E + L+++ + + K L
Sbjct: 41 APKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 28.4 bits (63), Expect = 5.1
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 8/121 (6%)
Query: 545 IDDINAEITKCTNELVDAKNCLVKNEKWVINLQEQFSLLEKSKETWVSLKLNSAESQSSA 604
ID I I +AK LV N + N+ L+
Sbjct: 361 IDPIIELIRHAPTP-AEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLY 419
Query: 605 SLQSQLNDALDNIKKYK---EEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVIKD 661
L Q A+ +++ K EH K+ E + L +++ + +L ++L VI++
Sbjct: 420 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA----ELLRILGSADRLMEVIRE 475
Query: 662 Y 662
Sbjct: 476 E 476
>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon
cuniculi [TaxId: 6035]}
Length = 131
Score = 27.0 bits (60), Expect = 5.6
Identities = 10/54 (18%), Positives = 25/54 (46%)
Query: 607 QSQLNDALDNIKKYKEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVIK 660
Q++ ++A + +KY+ +H + EI+ + EN+ ++ K +
Sbjct: 42 QNKTDEAKEFFEKYRGDHYNKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLS 95
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 27.7 bits (61), Expect = 6.8
Identities = 14/114 (12%), Positives = 39/114 (34%), Gaps = 1/114 (0%)
Query: 221 KSFTDDKLRDEIK-LLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECS 279
K K+ +I + Y ++L + K+ + + L + C
Sbjct: 163 KKDVTLKVEPQIYRWIREWGRDYMSELPKEQGKLNEKCASKLYYNNMAICMLPLCHDACK 222
Query: 280 NLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYE 333
+ + + R + + + + K+ K I + +++ N ++ +E
Sbjct: 223 SYDQWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFE 276
>d2bzba1 a.30.7.1 (A:1-54) Hypothetical protein BAS1536 {Bacillus
anthracis [TaxId: 1392]}
Length = 54
Score = 25.1 bits (55), Expect = 7.0
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 277 ECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLN 318
E L+ ++ + EL +++ ++ K F +D+L+N
Sbjct: 2 EMGQLKNKIENKKKELIQLVARHGLDHDKVLLFSRDLDKLIN 43
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 169
Score = 27.2 bits (60), Expect = 7.0
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 35 IGRCIARA---------KVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNN 85
IGR + R +V N + D K L+ H L + K + + + + + +
Sbjct: 11 IGRLVYRIIYERKNPDIEVVAINDLTDTKTLA--HLLKYDSVHKKFPGKVEYTENSLIVD 68
Query: 86 QRLSKTNEESAPHELCSGDVVQFGVD-VIETNR 117
+ K E P +L D+ GVD VIE+
Sbjct: 69 GKEIKVFAEPDPSKLPWKDL---GVDFVIESTG 98
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal
domain {Bacillus anthracis [TaxId: 1392]}
Length = 57
Score = 25.1 bits (55), Expect = 7.6
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 277 ECSNLQELLDRNRDELEEIIKKYQDQVTKNKEFESTIDQLLN 318
+ L + ++ + EL +++KY K F +D+LLN
Sbjct: 2 NVTKLNDRIEAKKKELIYLVEKYGFTHHKVISFSQELDRLLN 43
>d2nvna1 d.18.1.3 (A:1-121) Hypothetical protein syc2379_c
{Synechococcus sp. pcc 7942 [TaxId: 1140]}
Length = 121
Score = 26.2 bits (58), Expect = 9.5
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 588 ETWVSLKLNSAESQSSASLQSQLNDALDNIKKYKEEHSKMTMEIESL 634
W +++L +AE L QL + + I ++ +E ES
Sbjct: 29 TDW-AVELTAAEMADFCRLVQQLAETIAAIAPELMPEERLQIEAESA 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.127 0.344
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,060,676
Number of extensions: 143208
Number of successful extensions: 554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 91
Length of query: 903
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 809
Effective length of database: 1,116,976
Effective search space: 903633584
Effective search space used: 903633584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.2 bits)