BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5880
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UUM|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUM|B Chain B, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUO|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Brequinar
Length = 372
Score = 231 bits (590), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/248 (48%), Positives = 166/248 (66%), Gaps = 9/248 (3%)
Query: 80 LKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYF 139
++H L+ + + QL LP ++L + K D D +G+ G +A Y
Sbjct: 133 VEHRLRARQQKQAQLTADGLPL-------GINLGKNKTSEDAAADYAEGVRTLGPLADYL 185
Query: 140 VVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199
VVNVSSPNTA LR LQ K +L+HLL V++ R+ L P +LVKIAPDL+ +K+DIA
Sbjct: 186 VVNVSSPNTAGLRSLQGKTELRHLLSKVLQERDALKGTRKPAVLVKIAPDLTAQDKEDIA 245
Query: 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGK 259
V + +DGLIV+NTTV R L + ETGGLSG+PLR+ ST+ I EMY LT+G+
Sbjct: 246 SVA--RELGIDGLIVTNTTVSRPVGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGR 303
Query: 260 LPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVS 319
+PIIGVGGV SG+DA EKI+AGASLVQ+YT+ ++ GPP+V R+K ELE LL++ G+ +V+
Sbjct: 304 IPIIGVGGVSSGQDALEKIQAGASLVQLYTALIFLGPPVVVRVKRELEALLKERGFTTVT 363
Query: 320 QAVGAAHK 327
A+GA H+
Sbjct: 364 DAIGADHR 371
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 52/78 (66%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILV 104
+ G+ G +A Y VVNVSSPNTA LR LQ K +L+HLL V++ R+ L P +LV
Sbjct: 171 YAEGVRTLGPLADYLVVNVSSPNTAGLRSLQGKTELRHLLSKVLQERDALKGTRKPAVLV 230
Query: 105 KIAPDLSLDEKKDIADVV 122
KIAPDL+ +K+DIA V
Sbjct: 231 KIAPDLTAQDKEDIASVA 248
>pdb|3U2O|A Chain A, Dihydroorotate Dehydrogenase (Dhodh) Crystal Structure In
Complex With Small Molecule Inhibitor
Length = 395
Score = 224 bits (570), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 154/218 (70%), Gaps = 2/218 (0%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
++L + K D D +G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++
Sbjct: 179 VNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQ 238
Query: 170 TRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY 229
R+ L P +LVKIAPDL+ +K+DIA VV + +DGLIV+NTTV R L
Sbjct: 239 ERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVV--KELGIDGLIVTNTTVSRPAGLQGAL 296
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
+ ETGGLSG+PLR+ ST+ I EMY LT+G++PIIGVGGV SG+DA EKI+AGASLVQ+YT
Sbjct: 297 RSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYT 356
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
+ + GPP+V ++K ELE LL+++G+ V+ A+GA H+
Sbjct: 357 ALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHR 394
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 48 GILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIA 107
G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++ R+ L P +LVKIA
Sbjct: 197 GVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIA 256
Query: 108 PDLSLDEKKDIADVV 122
PDL+ +K+DIA VV
Sbjct: 257 PDLTSQDKEDIASVV 271
>pdb|1D3G|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Brequinar Analog
pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Antiproliferative Agent A771726
pdb|2BXV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2PRH|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRL|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRM|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|3F1Q|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 1
pdb|3FJ6|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 2
pdb|3FJL|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 3
pdb|3G0U|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 4
pdb|3G0X|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 5
pdb|3ZWS|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
Bound Inhibitor
pdb|3ZWT|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
Bound Inhibitor
Length = 367
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 154/218 (70%), Gaps = 2/218 (0%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
++L + K D D +G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++
Sbjct: 151 VNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQ 210
Query: 170 TRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY 229
R+ L P +LVKIAPDL+ +K+DIA VV + +DGLIV+NTTV R L
Sbjct: 211 ERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVV--KELGIDGLIVTNTTVSRPAGLQGAL 268
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
+ ETGGLSG+PLR+ ST+ I EMY LT+G++PIIGVGGV SG+DA EKI+AGASLVQ+YT
Sbjct: 269 RSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYT 328
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
+ + GPP+V ++K ELE LL+++G+ V+ A+GA H+
Sbjct: 329 ALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHR 366
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 48 GILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIA 107
G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++ R+ L P +LVKIA
Sbjct: 169 GVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIA 228
Query: 108 PDLSLDEKKDIADVV 122
PDL+ +K+DIA VV
Sbjct: 229 PDLTSQDKEDIASVV 243
>pdb|2WV8|A Chain A, Complex Of Human Dihydroorotate Dehydrogenase With The
Inhibitor 221290
Length = 365
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 154/218 (70%), Gaps = 2/218 (0%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
++L + K D D +G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++
Sbjct: 149 VNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQ 208
Query: 170 TRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY 229
R+ L P +LVKIAPDL+ +K+DIA VV + +DGLIV+NTTV R L
Sbjct: 209 ERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVV--KELGIDGLIVTNTTVSRPAGLQGAL 266
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
+ ETGGLSG+PLR+ ST+ I EMY LT+G++PIIGVGGV SG+DA EKI+AGASLVQ+YT
Sbjct: 267 RSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYT 326
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
+ + GPP+V ++K ELE LL+++G+ V+ A+GA H+
Sbjct: 327 ALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHR 364
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 48 GILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIA 107
G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++ R+ L P +LVKIA
Sbjct: 167 GVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIA 226
Query: 108 PDLSLDEKKDIADVV 122
PDL+ +K+DIA VV
Sbjct: 227 PDLTSQDKEDIASVV 241
>pdb|2B0M|A Chain A, Human Dihydroorotate Dehydrogenase Bound To A Novel
Inhibitor
Length = 393
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 154/218 (70%), Gaps = 2/218 (0%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
++L + K D D +G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++
Sbjct: 177 VNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQ 236
Query: 170 TRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY 229
R+ L P +LVKIAPDL+ +K+DIA VV + +DGLIV+NTTV R L
Sbjct: 237 ERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVV--KELGIDGLIVTNTTVSRPAGLQGAL 294
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
+ ETGGLSG+PLR+ ST+ I EMY LT+G++PIIGVGGV SG+DA EKI+AGASLVQ+YT
Sbjct: 295 RSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYT 354
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
+ + GPP+V ++K ELE LL+++G+ V+ A+GA H+
Sbjct: 355 ALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHR 392
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 48 GILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIA 107
G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++ R+ L P +LVKIA
Sbjct: 195 GVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIA 254
Query: 108 PDLSLDEKKDIADVV 122
PDL+ +K+DIA VV
Sbjct: 255 PDLTSQDKEDIASVV 269
>pdb|2FPT|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPY|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FQI|A Chain A, Dual Binding Modes Of A Novel Series Of Dhodh Inhibitors
Length = 395
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 154/218 (70%), Gaps = 2/218 (0%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
++L + K D D +G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++
Sbjct: 179 VNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQ 238
Query: 170 TRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY 229
R+ L P +LVKIAPDL+ +K+DIA VV + +DGLIV+NTTV R L
Sbjct: 239 ERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVV--KELGIDGLIVTNTTVSRPAGLQGAL 296
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
+ ETGGLSG+PLR+ ST+ I EMY LT+G++PIIGVGGV SG+DA EKI+AGASLVQ+YT
Sbjct: 297 RSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYT 356
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
+ + GPP+V ++K ELE LL+++G+ V+ A+GA H+
Sbjct: 357 ALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHR 394
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 48 GILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIA 107
G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++ R+ L P +LVKIA
Sbjct: 197 GVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIA 256
Query: 108 PDLSLDEKKDIADVV 122
PDL+ +K+DIA VV
Sbjct: 257 PDLTSQDKEDIASVV 271
>pdb|3KVJ|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 105 At 1.94a
Resolution
pdb|3KVK|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 641 At 2.05a
Resolution
pdb|3KVL|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 715 At 1.85a
Resolution
pdb|3KVM|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 951 At 2.00a
Resolution
Length = 390
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 154/218 (70%), Gaps = 2/218 (0%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
++L + K D D +G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++
Sbjct: 174 VNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQ 233
Query: 170 TRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY 229
R+ L P +LVKIAPDL+ +K+DIA VV + +DGLIV+NTTV R L
Sbjct: 234 ERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVV--KELGIDGLIVTNTTVSRPAGLQGAL 291
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
+ ETGGLSG+PLR+ ST+ I EMY LT+G++PIIGVGGV SG+DA EKI+AGASLVQ+YT
Sbjct: 292 RSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYT 351
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
+ + GPP+V ++K ELE LL+++G+ V+ A+GA H+
Sbjct: 352 ALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHR 389
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 48 GILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIA 107
G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++ R+ L P +LVKIA
Sbjct: 192 GVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIA 251
Query: 108 PDLSLDEKKDIADVV 122
PDL+ +K+DIA VV
Sbjct: 252 PDLTSQDKEDIASVV 266
>pdb|3SFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Dihydroorotate
Dehydrogenase Bound With Inhibitor Dsm267
Length = 400
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 138/231 (59%), Gaps = 18/231 (7%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+S+ + KD ++V D I K G A Y +NVSSPNT LR Q +LK+++ +V E
Sbjct: 171 VSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKE 230
Query: 170 TRNQL--------------AVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215
+ L K P + VK+APDL+ ++KK+IADV+L++ +DG+I+S
Sbjct: 231 EIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETN--IDGMIIS 288
Query: 216 NTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAF 275
NTT + ++ + GG+SG L++ ST+ I EMY T ++PII GG+FSG DA
Sbjct: 289 NTTTQINDI--KSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDAL 346
Query: 276 EKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAH 326
EKI+AGAS+ Q+Y+ V++G +IK EL LL + GY ++ +A+G H
Sbjct: 347 EKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYNLKEAIGRKH 397
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 14/91 (15%)
Query: 49 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL-------------- 94
I K G A Y +NVSSPNT LR Q +LK+++ +V E + L
Sbjct: 190 INKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFN 249
Query: 95 ALKPLPPILVKIAPDLSLDEKKDIADVVLDS 125
K P + VK+APDL+ ++KK+IADV+L++
Sbjct: 250 TTKKKPLVFVKLAPDLNQEQKKEIADVLLET 280
>pdb|3I65|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm1
pdb|3I68|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm2
pdb|3I6R|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm74
pdb|3O8A|A Chain A, Crystal Structure Of Plasmodium Falciparum Dihydroorotate
Dehydrogenase Bound With Novel Inhibitor Genz667348
Length = 415
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 138/231 (59%), Gaps = 18/231 (7%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+S+ + KD ++V D I K G A Y +NVSSPNT LR Q +LK+++ +V E
Sbjct: 186 VSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKE 245
Query: 170 TRNQL--------------AVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215
+ L K P + VK+APDL+ ++KK+IADV+L++ +DG+I+S
Sbjct: 246 EIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETN--IDGMIIS 303
Query: 216 NTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAF 275
NTT + ++ + GG+SG L++ ST+ I EMY T ++PII GG+FSG DA
Sbjct: 304 NTTTQINDI--KSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDAL 361
Query: 276 EKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAH 326
EKI+AGAS+ Q+Y+ V++G +IK EL LL + GY ++ +A+G H
Sbjct: 362 EKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYNLKEAIGRKH 412
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 14/91 (15%)
Query: 49 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL-------------- 94
I K G A Y +NVSSPNT LR Q +LK+++ +V E + L
Sbjct: 205 INKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFN 264
Query: 95 ALKPLPPILVKIAPDLSLDEKKDIADVVLDS 125
K P + VK+APDL+ ++KK+IADV+L++
Sbjct: 265 TTKKKPLVFVKLAPDLNQEQKKEIADVLLET 295
>pdb|1TV5|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase With A
Bound Inhibitor
Length = 443
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 138/261 (52%), Gaps = 48/261 (18%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+S+ + KD ++V D I K G A Y +NVSSPNT LR Q +LK+++ +V E
Sbjct: 184 VSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKE 243
Query: 170 TRNQL--------------------------------------------AVKPLPPILVK 185
+ L K P + VK
Sbjct: 244 EIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVK 303
Query: 186 IAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKS 245
+APDL+ ++KK+IADV+L++ +DG+I+SNTT + ++ + GG+SG L++ S
Sbjct: 304 LAPDLNQEQKKEIADVLLETN--IDGMIISNTTTQINDI--KSFENKKGGVSGAKLKDIS 359
Query: 246 TELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305
T+ I EMY T ++PII GG+FSG DA EKI+AGAS+ Q+Y+ V++G +IK E
Sbjct: 360 TKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRE 419
Query: 306 LEELLQKEGYNSVSQAVGAAH 326
L LL + GY ++ +A+G H
Sbjct: 420 LNHLLYQRGYYNLKEAIGRKH 440
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 44/121 (36%)
Query: 49 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL-------------- 94
I K G A Y +NVSSPNT LR Q +LK+++ +V E + L
Sbjct: 203 INKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNE 262
Query: 95 ------------------------------ALKPLPPILVKIAPDLSLDEKKDIADVVLD 124
K P + VK+APDL+ ++KK+IADV+L+
Sbjct: 263 DNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLE 322
Query: 125 S 125
+
Sbjct: 323 T 323
>pdb|1F76|A Chain A, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|B Chain B, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|D Chain D, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|E Chain E, Escherichia Coli Dihydroorotate Dehydrogenase
Length = 336
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 108/173 (62%), Gaps = 4/173 (2%)
Query: 136 AHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAV--KPLPPILVKIAPDLSLD 193
A Y +N+SSPNT LR LQ + L LL + +N L PI VKIAPDLS +
Sbjct: 166 AGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAXHHKYVPIAVKIAPDLSEE 225
Query: 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMY 253
E +AD ++ + +DG+I +NTT+DR + ++TGGLSG PL+ KSTE+I +
Sbjct: 226 ELIQVADSLV--RHNIDGVIATNTTLDRSLVQGXKNCDQTGGLSGRPLQLKSTEIIRRLS 283
Query: 254 KLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306
G+LPIIGVGG+ S A EKI AGASLVQIY+ F++ GPPL+ I + +
Sbjct: 284 LELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI 336
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAL--KPLPPI 102
+L+ K A Y +N+SSPNT LR LQ + L LL + +N L PI
Sbjct: 155 YLICXEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAXHHKYVPI 214
Query: 103 LVKIAPDLSLDEKKDIAD-VVLDSVKGIL 130
VKIAPDLS +E +AD +V ++ G++
Sbjct: 215 AVKIAPDLSEEELIQVADSLVRHNIDGVI 243
>pdb|2DJL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Succinate
pdb|2DJL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Succinate
pdb|2DJX|A Chain A, Crystal Structure Of Native Trypanosoma Cruzi
Dihydroorotate Dehydrogenase
pdb|2DJX|B Chain B, Crystal Structure Of Native Trypanosoma Cruzi
Dihydroorotate Dehydrogenase
Length = 314
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 14/189 (7%)
Query: 141 VNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200
+N+S PN + K Q+ + + + Q+++ P VK+ P + D A
Sbjct: 128 LNLSCPN------VPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDI-AHFDTAA 180
Query: 201 VVLDSKCKVDGLIVSNTTVD------RYEYLDARYKEETGGLSGEPLRNKSTELISEMYK 254
VL+ V + N+ + E + + K+ GGL G+ + + ++ Y+
Sbjct: 181 AVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYR 240
Query: 255 LTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEG 314
KL + G GGV+SG+DAF I AGAS+VQ+ T+ GP + TR++ EL E++ ++G
Sbjct: 241 RCPDKL-VFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKG 299
Query: 315 YNSVSQAVG 323
Y ++ + G
Sbjct: 300 YRTLEEFRG 308
>pdb|2E68|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Dihydroorotate
pdb|2E68|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Dihydroorotate
pdb|2E6A|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Orotate
pdb|2E6A|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Orotate
pdb|2E6D|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|2E6D|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|2E6F|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Oxonate
pdb|2E6F|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Oxonate
Length = 314
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 14/189 (7%)
Query: 141 VNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200
+N+S PN + K Q+ + + + Q+++ P VK+ P + D A
Sbjct: 128 LNLSCPN------VPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDI-AHFDTAA 180
Query: 201 VVLDSKCKVDGLIVSNTTVD------RYEYLDARYKEETGGLSGEPLRNKSTELISEMYK 254
VL+ V + N+ + E + + K+ GGL G+ + + ++ Y+
Sbjct: 181 AVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYR 240
Query: 255 LTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEG 314
KL + G GGV+SG+DAF I AGAS+VQ+ T+ GP + TR++ EL E++ ++G
Sbjct: 241 RCPDKL-VFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKG 299
Query: 315 YNSVSQAVG 323
Y ++ + G
Sbjct: 300 YRTLEEFRG 308
>pdb|3C3N|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|C Chain C, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|D Chain D, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
Length = 312
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 14/189 (7%)
Query: 141 VNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200
+N+S PN + K Q+ + + + Q+++ P VK+ P + D A
Sbjct: 126 LNLSCPN------VPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDI-AHFDTAA 178
Query: 201 VVLDSKCKVDGLIVSNTTVD------RYEYLDARYKEETGGLSGEPLRNKSTELISEMYK 254
VL+ V + N+ + E + + K+ GGL G+ + + ++ Y+
Sbjct: 179 AVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYR 238
Query: 255 LTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEG 314
KL + G GGV+SG+DAF I AGAS+VQ+ T+ GP + TR++ EL E++ ++G
Sbjct: 239 RCPDKL-VFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKG 297
Query: 315 YNSVSQAVG 323
Y ++ + G
Sbjct: 298 YRTLEEFRG 306
>pdb|1JRB|A Chain A, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRB|B Chain B, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 122/272 (44%), Gaps = 23/272 (8%)
Query: 55 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDE 114
+A Y + + S N+ L L L ++LK E + PI IA +S E
Sbjct: 55 LARYVDLELGSINSMGLPNLGFDYYLDYVLKNQKENAQE------GPIFFSIA-GMSAAE 107
Query: 115 KKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAK-DQLKHLLKTVVETRNQ 173
+ + +S D + +N+S PN +L + + LLK V +
Sbjct: 108 NIAMLKKIQES--------DFSGITELNLSCPNVPGKPQLAYDFEATEKLLKEVFTFFTK 159
Query: 174 -LAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKV-DGLIVSNTTVDRYEYLDARYKE 231
L VK LPP + D+ + ++S + +GL + E + + K+
Sbjct: 160 PLGVK-LPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFID----PEAESVVIKPKD 214
Query: 232 ETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291
GG+ G ++ + + Y K ++ IIG GG+ +G+DAFE + GA+++QI T+
Sbjct: 215 GFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTAL 274
Query: 292 VYHGPPLVTRIKSELEELLQKEGYNSVSQAVG 323
GP + RI ELEE++ ++GY S++ G
Sbjct: 275 HKEGPAIFDRIIKELEEIMNQKGYQSIADFHG 306
>pdb|3C61|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
pdb|3C61|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
pdb|3C61|C Chain C, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
pdb|3C61|D Chain D, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
Length = 314
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 10/187 (5%)
Query: 141 VNVSSPNTANLRKLQAK-DQLKHLLKTVVETR-NQLAVKPLPPILVKIAPDLSLDEKKDI 198
+N+S PN ++ D ++ L V E + VK +PP D + + +
Sbjct: 128 LNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVK-MPPYFDFAHFDAAAEILNEF 186
Query: 199 ADVVLDSKCKV--DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT 256
V + +GL++ T E + + K+ GGL G + + ++ Y+
Sbjct: 187 PQVQFITCINSIGNGLVIDAET----ESVVIKPKQGFGGLGGRYVLPTALANVNAFYRRC 242
Query: 257 KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYN 316
GKL I G GGV++G+DAF + AGAS+VQ+ T+ GP + R+ +EL +++ K+GY
Sbjct: 243 PGKL-IFGCGGVYTGEDAFLHVLAGASMVQVGTALHEEGPAIFERLTAELLDVMAKKGYQ 301
Query: 317 SVSQAVG 323
++ + G
Sbjct: 302 TLDEFRG 308
>pdb|1DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|1DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|2DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|1JUE|A Chain A, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|1JUE|B Chain B, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|2BSL|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BSL|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BX7|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
pdb|2BX7|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
Length = 311
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 56/94 (59%)
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
K+ GG+ G ++ + + Y K ++ IIG GG+ +G+DAFE + GA+++QI T
Sbjct: 213 KDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGT 272
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVG 323
+ GP + RI ELEE++ ++GY S++ G
Sbjct: 273 ALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHG 306
>pdb|1JRC|A Chain A, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRC|B Chain B, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 56/94 (59%)
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
K+ GG+ G ++ + + Y K ++ IIG GG+ +G+DAFE + GA+++QI T
Sbjct: 213 KDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGT 272
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVG 323
+ GP + RI ELEE++ ++GY S++ G
Sbjct: 273 ALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHG 306
>pdb|1JQX|A Chain A, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQX|B Chain B, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 56/94 (59%)
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
K+ GG+ G ++ + + Y K ++ IIG GG+ +G+DAFE + GA+++QI T
Sbjct: 213 KDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGT 272
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVG 323
+ GP + RI ELEE++ ++GY S++ G
Sbjct: 273 ALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHG 306
>pdb|1JUB|A Chain A, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JUB|B Chain B, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1OVD|A Chain A, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A In Complex With Orotate
pdb|1OVD|B Chain B, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A In Complex With Orotate
Length = 311
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 56/94 (59%)
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
K+ GG+ G ++ + + Y K ++ IIG GG+ +G+DAFE + GA+++QI T
Sbjct: 213 KDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGT 272
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVG 323
+ GP + RI ELEE++ ++GY S++ G
Sbjct: 273 ALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHG 306
>pdb|1JQV|A Chain A, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQV|B Chain B, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%)
Query: 234 GGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293
GG+ G ++ + + Y K ++ IIG GG+ +G+DAFE + GA+++QI T+
Sbjct: 217 GGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK 276
Query: 294 HGPPLVTRIKSELEELLQKEGYNSVSQAVG 323
GP + RI ELEE++ ++GY S++ G
Sbjct: 277 EGPAIFDRIIKELEEIMNQKGYQSIADFHG 306
>pdb|3OIX|A Chain A, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|B Chain B, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|C Chain C, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|D Chain D, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
Length = 345
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
K GG+ G+ ++ + + YK + IIG GGV +G+DAFE I GAS+VQI T
Sbjct: 246 KNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGT 305
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVG 323
+ GP + RI EL ++ ++GY ++ G
Sbjct: 306 ALHQEGPQIFKRITKELXAIMTEKGYETLEDFRG 339
>pdb|3MHU|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Nitroorotic Acid
pdb|3MHU|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Nitroorotic Acid
pdb|3MJY|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Aminoorotic Acid
pdb|3MJY|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Aminoorotic Acid
pdb|3TQ0|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|3TQ0|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase In Complex With Fumarate
Length = 346
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 26/195 (13%)
Query: 141 VNVSSPNTANLRKLQAK-DQLKHLLKTVVETR-NQLAVKPLPPILVKIAPDLSLDEKKDI 198
+N+S PN ++ D ++ L V E + VK +PP D + D
Sbjct: 161 LNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVK-MPPYF-----DFA---HFDA 211
Query: 199 ADVVLDSKCKV----------DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTEL 248
A +L+ KV +GL++ T E + + K+ GGL G + +
Sbjct: 212 AAEILNEFPKVQFITCINSIGNGLVIDAET----ESVVIKPKQGFGGLGGRYVLPTALAN 267
Query: 249 ISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEE 308
I+ Y+ GKL I G GGV++G+DAF + AGAS+VQ+ T+ GP + R+ SEL
Sbjct: 268 INAFYRRCPGKL-IFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLG 326
Query: 309 LLQKEGYNSVSQAVG 323
++ K+ Y ++ + G
Sbjct: 327 VMAKKRYQTLDEFRG 341
>pdb|3GYE|A Chain A, Didydroorotate Dehydrogenase From Leishmania Major
pdb|3GYE|B Chain B, Didydroorotate Dehydrogenase From Leishmania Major
pdb|3GZ3|A Chain A, Leishmania Major Dihydroorotate Dehydrogenase In Complex
Wit
pdb|3GZ3|B Chain B, Leishmania Major Dihydroorotate Dehydrogenase In Complex
Wit
pdb|4EF8|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With Phenyl Isothiocyanate
pdb|4EF8|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With Phenyl Isothiocyanate
pdb|4EF9|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 4-Nitrophenyl
Isothiocyanate
pdb|4EF9|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 4-Nitrophenyl
Isothiocyanate
Length = 354
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 26/195 (13%)
Query: 141 VNVSSPNTANLRKLQAK-DQLKHLLKTVVETR-NQLAVKPLPPILVKIAPDLSLDEKKDI 198
+N+S PN ++ D ++ L V E + VK +PP D + D
Sbjct: 161 LNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVK-MPPYF-----DFA---HFDA 211
Query: 199 ADVVLDSKCKV----------DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTEL 248
A +L+ KV +GL++ T E + + K+ GGL G + +
Sbjct: 212 AAEILNEFPKVQFITCINSIGNGLVIDAET----ESVVIKPKQGFGGLGGRYVLPTALAN 267
Query: 249 ISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEE 308
I+ Y+ GKL I G GGV++G+DAF + AGAS+VQ+ T+ GP + R+ SEL
Sbjct: 268 INAFYRRCPGKL-IFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLG 326
Query: 309 LLQKEGYNSVSQAVG 323
++ K+ Y ++ + G
Sbjct: 327 VMAKKRYQTLDEFRG 341
>pdb|3TRO|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant D171a
pdb|3TRO|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant D171a
Length = 354
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Query: 210 DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269
+GL++ T E + + K+ GGL G + + I+ Y+ GKL I G GGV+
Sbjct: 233 NGLVIDAET----ESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKL-IFGCGGVY 287
Query: 270 SGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVG 323
+G+DAF + AGAS+VQ+ T+ GP + R+ SEL ++ K+ Y ++ + G
Sbjct: 288 TGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRYQTLDEFRG 341
>pdb|3TJX|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant H174a
pdb|3TJX|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant H174a
Length = 354
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Query: 210 DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269
+GL++ T E + + K+ GGL G + + I+ Y+ GKL I G GGV+
Sbjct: 233 NGLVIDAET----ESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKL-IFGCGGVY 287
Query: 270 SGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVG 323
+G+DAF + AGAS+VQ+ T+ GP + R+ SEL ++ K+ Y ++ + G
Sbjct: 288 TGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRYQTLDEFRG 341
>pdb|2B4G|A Chain A, Dihydroorotate Dehydrogenase
pdb|2B4G|B Chain B, Dihydroorotate Dehydrogenase
pdb|2B4G|C Chain C, Dihydroorotate Dehydrogenase
pdb|2B4G|D Chain D, Dihydroorotate Dehydrogenase
Length = 317
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
K+ GGL G+ + + ++ ++ KL + G GGV+SG++AF I AGAS+VQ+ T
Sbjct: 219 KQGFGGLGGKYVLPTALANVNAFFRRCPDKL-VFGCGGVYSGEEAFLHILAGASMVQVGT 277
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVG 323
+ GP + R+ EL+E++ +GY ++ + G
Sbjct: 278 ALHDEGPIIFARLNKELQEIMTNKGYKTLDEFRG 311
>pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions
Length = 311
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 19/195 (9%)
Query: 124 DSVKGILKFGDVAHYFVV--NVSSPNTANLRKLQAKD-QLKHLLKTVVETRNQLAVKPLP 180
D V K GD A+ + N+S PN + + D ++ L + +++
Sbjct: 112 DYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKV------ 165
Query: 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDAR---YKEETGGLS 237
P+ VK++P+++ + IA V DGL + NT + L R TGGLS
Sbjct: 166 PLYVKLSPNVT--DIVPIAKAV--EAAGADGLTMINTLMGVRFDLKTRQPILANITGGLS 221
Query: 238 GEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPP 297
G ++ + +LI ++ + +PIIG+GGV + +D E AGAS V + T+ + P
Sbjct: 222 GPAIKPVALKLIHQVAQDVD--IPIIGMGGVANAQDVLEMYMAGASAVAVGTAN-FADPF 278
Query: 298 LVTRIKSELEELLQK 312
+ +I +L EL+ +
Sbjct: 279 VCPKIIDKLPELMDQ 293
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 74/161 (45%), Gaps = 20/161 (12%)
Query: 141 VNVSSPNTANLRKLQ-AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199
+N+S+P+ R + A Q L++ + Q AV+ P K+ P+++ DI
Sbjct: 667 LNLSAPHGMGERGMGLACGQDPELVRNICRWVRQ-AVQI--PFFAKLTPNVT-----DIV 718
Query: 200 DVVLDSK-CKVDGLIVSNTTVD---------RYEYLDARYKEETGGLSGEPLRNKSTELI 249
+ +K DG+ +NT + + A + GG+SG +R + +
Sbjct: 719 SIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAV 778
Query: 250 SEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTS 290
+ + + G PI+ GG+ S + + + +GAS++Q+ ++
Sbjct: 779 TTIARALPG-FPILATGGIDSAESGLQFLHSGASVLQVCSA 818
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 141 VNVSSPNTANLRKLQ-AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199
+N+S P+ R + A Q L++ + Q AV+ P K+ P+++ DI
Sbjct: 667 LNLSCPHGMGERGMGLACGQDPELVRNICRWVRQ-AVQI--PFFAKLTPNVT-----DIV 718
Query: 200 DVVLDSK-CKVDGLIVSNTTVD---------RYEYLDARYKEETGGLSGEPLRNKSTELI 249
+ +K DG+ +NT + + A + GG+SG +R + +
Sbjct: 719 SIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAV 778
Query: 250 SEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTS 290
+ + + G PI+ GG+ S + + + +GAS++Q+ ++
Sbjct: 779 TTIARALPG-FPILATGGIDSAESGLQFLHSGASVLQVCSA 818
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
pdb|1GYL|B Chain B, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
Length = 369
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 24/113 (21%)
Query: 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGK 259
D L + G+IVSN + +Y+ A + + E+ K +G+
Sbjct: 237 DARLAVQHGAAGIIVSNHGARQLDYVPA-----------------TIMALEEVVKAAQGR 279
Query: 260 LPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQK 312
+P+ GGV G D F+ + GA + V+ G P+V + +E E ++K
Sbjct: 280 IPVFLDGGVRRGTDVFKALALGA-------AGVFIGRPVVFSLAAEGEAGVKK 325
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2
Angstroms Resolution
Length = 370
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 24/113 (21%)
Query: 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGK 259
D L + G+IVSN + +Y+ A + + E+ K +G+
Sbjct: 238 DARLAVQHGAAGIIVSNHGARQLDYVPA-----------------TIMALEEVVKAAQGR 280
Query: 260 LPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQK 312
+P+ GGV G D F+ + GA + V+ G P+V + +E E ++K
Sbjct: 281 IPVFLDGGVRRGTDVFKALALGA-------AGVFIGRPVVFSLAAEGEAGVKK 326
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|1 Chain 1, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|2 Chain 2, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|3 Chain 3, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Y Chain Y, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Z Chain Z, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 226
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 24/113 (21%)
Query: 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGK 259
D L + G+IVSN + +Y+ A + + E+ K +G+
Sbjct: 121 DARLAVQHGAAGIIVSNHGARQLDYVPA-----------------TIMALEEVVKAAQGR 163
Query: 260 LPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQK 312
+P+ GGV G D F+ + GA + V+ G P+V + +E E ++K
Sbjct: 164 IPVFLDGGVRRGTDVFKALALGA-------AGVFIGRPVVFSLAAEGEAGVKK 209
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With
Bound Active- Site Inhibitors
pdb|1AL8|A Chain A, Three-Dimensional Structure Of Glycolate Oxidase With
Bound Active- Site Inhibitors
Length = 359
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 24/102 (23%)
Query: 211 GLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFS 270
G+IVSN + +Y+ A + + E+ K +G++P+ GGV
Sbjct: 248 GIIVSNHGARQLDYVPA-----------------TIMALEEVVKAAQGRIPVFLDGGVRR 290
Query: 271 GKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQK 312
G D F+ + GA + V+ G P+V + +E E ++K
Sbjct: 291 GTDVFKALALGA-------AGVFIGRPVVFSLAAEGEAGVKK 325
>pdb|3OG3|A Chain A, Crystal Structure Of An Artificial Thermostable
(Ba)8-Barrel Protein From Identical Half Barrels
Length = 251
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 246 TELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305
TE+I + LT LPII GG + E AGA V I T+ V + P L+T+I
Sbjct: 184 TEMIRFVRPLTT--LPIIASGGAGKMEHFLEAFLAGADKVSINTAAVEN-PSLITQIAQT 240
Query: 306 LEEL 309
L
Sbjct: 241 FGSL 244
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 246 TELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRI 302
TE+I + LT LPII GG + E AGA V I T+ V + P L+T+I
Sbjct: 63 TEMIRFVRPLTT--LPIIASGGAGKMEHFLEAFLAGADKVSINTAAVEN-PSLITQI 116
>pdb|2Z6J|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
pdb|2Z6J|B Chain B, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
Length = 332
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 260 LPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292
+P+I GG+ G+ A GA VQ+ T FV
Sbjct: 163 IPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFV 195
>pdb|2INF|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|B Chain B, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|C Chain C, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|D Chain D, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
Length = 359
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 13/59 (22%)
Query: 277 KIKAGASLVQIYTSFV---------YHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAH 326
+IKAGA +QI+ S+V + P++ RI SE L KE + VGA+H
Sbjct: 202 QIKAGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSE----LAKENVPLIMFGVGASH 256
>pdb|3DKX|A Chain A, Crystal Structure Of The Replication Initiator Protein
Encoded On Plasmid Pmv158 (Repb), Trigonal Form, To 2.7
Ang Resolution
pdb|3DKX|B Chain B, Crystal Structure Of The Replication Initiator Protein
Encoded On Plasmid Pmv158 (Repb), Trigonal Form, To 2.7
Ang Resolution
pdb|3DKX|C Chain C, Crystal Structure Of The Replication Initiator Protein
Encoded On Plasmid Pmv158 (Repb), Trigonal Form, To 2.7
Ang Resolution
pdb|3DKY|A Chain A, Crystal Structure Of The Replication Initiator Protein
Encoded On Plasmid Pmv158 (Repb), Tetragonal Form, To
3.6 Ang Resolution
pdb|3DKY|B Chain B, Crystal Structure Of The Replication Initiator Protein
Encoded On Plasmid Pmv158 (Repb), Tetragonal Form, To
3.6 Ang Resolution
pdb|3DKY|C Chain C, Crystal Structure Of The Replication Initiator Protein
Encoded On Plasmid Pmv158 (Repb), Tetragonal Form, To
3.6 Ang Resolution
pdb|3DKY|D Chain D, Crystal Structure Of The Replication Initiator Protein
Encoded On Plasmid Pmv158 (Repb), Tetragonal Form, To
3.6 Ang Resolution
pdb|3DKY|E Chain E, Crystal Structure Of The Replication Initiator Protein
Encoded On Plasmid Pmv158 (Repb), Tetragonal Form, To
3.6 Ang Resolution
pdb|3DKY|F Chain F, Crystal Structure Of The Replication Initiator Protein
Encoded On Plasmid Pmv158 (Repb), Tetragonal Form, To
3.6 Ang Resolution
Length = 210
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 22/152 (14%)
Query: 136 AHYFVVNVS-SPNTANLRKLQAKDQLKHLL--KTVVETRNQLAVKPLPPILVKIAPDLSL 192
AHY V+ ++ +P TA+ + ++K LL K++ + L V+ + L + D ++
Sbjct: 54 AHYHVLYIAKNPVTAD----SVRKKIKLLLGEKSLAMVQVVLNVENMYLYLTHESKD-AI 108
Query: 193 DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEM 252
+KK + D K D +++N +DRY LD K E + +R + + I ++
Sbjct: 109 AKKKHVYD-------KADIKLINNFDIDRYVTLDVEEKTELFNVVVSLIRAYTLQNIFDL 161
Query: 253 YKL------TKGKLPIIGVGGVFSGKDAFEKI 278
Y T G L I V V +GK F K+
Sbjct: 162 YDFIDENGETYG-LTINLVNEVIAGKTGFMKL 192
>pdb|1YPF|A Chain A, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|1YPF|B Chain B, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|2A1Y|A Chain A, Crystal Structure Of Guac-Gmp Complex From Bacillus
Anthracis At 2.26 A Resolution
Length = 336
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 261 PIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQ 320
PII GG+ + D + I+ GA++V I + F H I E + L KE + S S+
Sbjct: 212 PIIADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGETI--EKDGKLYKEYFGSASE 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,216,122
Number of Sequences: 62578
Number of extensions: 368740
Number of successful extensions: 1188
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1115
Number of HSP's gapped (non-prelim): 66
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)