BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5880
(328 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q63707|PYRD_RAT Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Rattus
norvegicus GN=Dhodh PE=1 SV=1
Length = 395
Score = 232 bits (591), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 121/248 (48%), Positives = 166/248 (66%), Gaps = 9/248 (3%)
Query: 80 LKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYF 139
++H L+ + + QL LP ++L + K D D +G+ G +A Y
Sbjct: 156 VEHRLRARQQKQAQLTADGLPL-------GINLGKNKTSEDAAADYAEGVRTLGPLADYL 208
Query: 140 VVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199
VVNVSSPNTA LR LQ K +L+HLL V++ R+ L P +LVKIAPDL+ +K+DIA
Sbjct: 209 VVNVSSPNTAGLRSLQGKTELRHLLSKVLQERDALKGTRKPAVLVKIAPDLTAQDKEDIA 268
Query: 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGK 259
V + +DGLIV+NTTV R L + ETGGLSG+PLR+ ST+ I EMY LT+G+
Sbjct: 269 SVA--RELGIDGLIVTNTTVSRPVGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGR 326
Query: 260 LPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVS 319
+PIIGVGGV SG+DA EKI+AGASLVQ+YT+ ++ GPP+V R+K ELE LL++ G+ +V+
Sbjct: 327 IPIIGVGGVSSGQDALEKIQAGASLVQLYTALIFLGPPVVVRVKRELEALLKERGFTTVT 386
Query: 320 QAVGAAHK 327
A+GA H+
Sbjct: 387 DAIGADHR 394
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 51/74 (68%)
Query: 48 GILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIA 107
G+ G +A Y VVNVSSPNTA LR LQ K +L+HLL V++ R+ L P +LVKIA
Sbjct: 197 GVRTLGPLADYLVVNVSSPNTAGLRSLQGKTELRHLLSKVLQERDALKGTRKPAVLVKIA 256
Query: 108 PDLSLDEKKDIADV 121
PDL+ +K+DIA V
Sbjct: 257 PDLTAQDKEDIASV 270
>sp|O35435|PYRD_MOUSE Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Mus
musculus GN=Dhodh PE=2 SV=2
Length = 395
Score = 228 bits (581), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 120/248 (48%), Positives = 164/248 (66%), Gaps = 9/248 (3%)
Query: 80 LKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYF 139
++H L+ + + QL LP ++L + K D D V+G+ G +A Y
Sbjct: 156 VEHRLRARQQKQTQLTTDGLPL-------GINLGKNKTSVDAAADYVEGVRILGPLADYL 208
Query: 140 VVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199
VVNVSSPNTA LR LQ K +L+ LL V++ R+ L P +LVKIAPDL+ +K+DIA
Sbjct: 209 VVNVSSPNTAGLRSLQGKTELRRLLSKVLQERDALKGPQKPAVLVKIAPDLTAQDKEDIA 268
Query: 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGK 259
V + +DGLI++NTTV R L + ETGGLSG+PLR+ ST+ I EMY LT+G
Sbjct: 269 SVA--RELGIDGLIITNTTVSRPVGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGT 326
Query: 260 LPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVS 319
+PIIGVGGV SG+DA EKI+AGASLVQ+YT+ + GPP+V R+K ELE LL++ G+N+V+
Sbjct: 327 IPIIGVGGVSSGQDALEKIQAGASLVQLYTALTFLGPPVVARVKRELEALLKERGFNTVT 386
Query: 320 QAVGAAHK 327
A+G H+
Sbjct: 387 DAIGVDHR 394
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 52/77 (67%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILV 104
++ G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++ R+ L P +LV
Sbjct: 194 YVEGVRILGPLADYLVVNVSSPNTAGLRSLQGKTELRRLLSKVLQERDALKGPQKPAVLV 253
Query: 105 KIAPDLSLDEKKDIADV 121
KIAPDL+ +K+DIA V
Sbjct: 254 KIAPDLTAQDKEDIASV 270
>sp|Q5E9W3|PYRD_BOVIN Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Bos taurus
GN=DHODH PE=1 SV=1
Length = 395
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 119/248 (47%), Positives = 165/248 (66%), Gaps = 9/248 (3%)
Query: 80 LKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYF 139
++H L+ +T+ +L LP ++L + K D D +G+ G +A Y
Sbjct: 156 VEHRLRARQQTQARLTEDGLPL-------GINLGKNKTSVDAASDYAEGVRVLGPLADYL 208
Query: 140 VVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199
VVNVSSPNTA LR LQ K +L+ LL V++ R+ L V P +LVKIAPDL+ +K+DIA
Sbjct: 209 VVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDALKVAHKPAVLVKIAPDLTAQDKEDIA 268
Query: 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGK 259
VV + +DGLIV+N+TV R L + E GGLSG+PLR+ ST+ I EMY LT+G+
Sbjct: 269 SVV--RELGIDGLIVTNSTVSRPASLQGALRSEPGGLSGKPLRDLSTQTIREMYALTQGR 326
Query: 260 LPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVS 319
+PI+GVGGV SG+DA EKI+AGASLVQ+YT+ Y GPP+V +K ELE LL+++G+ V+
Sbjct: 327 VPIVGVGGVSSGQDALEKIRAGASLVQLYTALTYRGPPVVGGVKRELEALLKEQGFARVT 386
Query: 320 QAVGAAHK 327
A+GA H+
Sbjct: 387 DAIGADHR 394
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 52/75 (69%)
Query: 48 GILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIA 107
G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++ R+ L + P +LVKIA
Sbjct: 197 GVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDALKVAHKPAVLVKIA 256
Query: 108 PDLSLDEKKDIADVV 122
PDL+ +K+DIA VV
Sbjct: 257 PDLTAQDKEDIASVV 271
>sp|Q02127|PYRD_HUMAN Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Homo
sapiens GN=DHODH PE=1 SV=3
Length = 395
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 154/218 (70%), Gaps = 2/218 (0%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
++L + K D D +G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++
Sbjct: 179 VNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQ 238
Query: 170 TRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY 229
R+ L P +LVKIAPDL+ +K+DIA VV + +DGLIV+NTTV R L
Sbjct: 239 ERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVV--KELGIDGLIVTNTTVSRPAGLQGAL 296
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
+ ETGGLSG+PLR+ ST+ I EMY LT+G++PIIGVGGV SG+DA EKI+AGASLVQ+YT
Sbjct: 297 RSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYT 356
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
+ + GPP+V ++K ELE LL+++G+ V+ A+GA H+
Sbjct: 357 ALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHR 394
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 48 GILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIA 107
G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++ R+ L P +LVKIA
Sbjct: 197 GVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIA 256
Query: 108 PDLSLDEKKDIADVV 122
PDL+ +K+DIA VV
Sbjct: 257 PDLTSQDKEDIASVV 271
>sp|P32748|PYRD_DROME Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Drosophila
melanogaster GN=Dhod PE=2 SV=2
Length = 405
Score = 221 bits (563), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 153/218 (70%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
++L K + D V+G+ FG VA Y V+NVSSPNT LR +Q+K++L+ LL+ V +
Sbjct: 183 VNLGRNKTTMSPIADYVQGVRVFGPVADYLVINVSSPNTKGLRDMQSKEKLRELLEQVND 242
Query: 170 TRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY 229
T++ L PIL+K++PDLSLD+ KDI V+ K +VDGLIVSNTTV R +
Sbjct: 243 TKSSLDKNKNVPILLKLSPDLSLDDMKDIVWVIKRKKSRVDGLIVSNTTVSRENIEKNKL 302
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
EETGGLSG PL+ +STE+I++MY+LT GK+PIIGVGGV SG DA+EKI+AGAS VQIYT
Sbjct: 303 AEETGGLSGPPLKARSTEMIAQMYQLTDGKIPIIGVGGVASGYDAYEKIEAGASYVQIYT 362
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
+ VY GP LV IK+EL L+ + G+ +V+ VG K
Sbjct: 363 ALVYEGPALVEDIKAELSALITRLGHTNVADVVGTNSK 400
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 56/78 (71%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILV 104
++ G+ FG VA Y V+NVSSPNT LR +Q+K++L+ LL+ V +T++ L PIL+
Sbjct: 198 YVQGVRVFGPVADYLVINVSSPNTKGLRDMQSKEKLRELLEQVNDTKSSLDKNKNVPILL 257
Query: 105 KIAPDLSLDEKKDIADVV 122
K++PDLSLD+ KDI V+
Sbjct: 258 KLSPDLSLDDMKDIVWVI 275
>sp|Q5R6X6|PYRD_PONAB Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Pongo
abelii GN=DHODH PE=2 SV=1
Length = 395
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 152/218 (69%), Gaps = 2/218 (0%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
++L + K D D +G+ G +A VVNVSSPNTA LR LQ K +L+ LL V++
Sbjct: 179 VNLGKNKTSVDAAEDYAEGVRVLGPLADCLVVNVSSPNTAGLRNLQGKAELRRLLTKVLQ 238
Query: 170 TRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY 229
R+ L P +LVKIAPDL+ +K+DIA VV + +DGLIV+NTTV R L
Sbjct: 239 ERDGLRGVHRPAVLVKIAPDLTSQDKEDIASVV--KELGIDGLIVTNTTVSRPAGLQGAL 296
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
+ ETGGLSG+P R+ STE I EMY LT+G++PIIGVGGV SG+DA EKI+AGASLVQ+YT
Sbjct: 297 RSETGGLSGKPPRDLSTETIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYT 356
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
+ + GPP+V ++K ELE LL+++G+ V+ A+GA H+
Sbjct: 357 ALTFWGPPVVGKVKRELEALLKEQGFCRVTDAIGADHR 394
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 50/75 (66%)
Query: 48 GILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIA 107
G+ G +A VVNVSSPNTA LR LQ K +L+ LL V++ R+ L P +LVKIA
Sbjct: 197 GVRVLGPLADCLVVNVSSPNTAGLRNLQGKAELRRLLTKVLQERDGLRGVHRPAVLVKIA 256
Query: 108 PDLSLDEKKDIADVV 122
PDL+ +K+DIA VV
Sbjct: 257 PDLTSQDKEDIASVV 271
>sp|P32746|PYRD_ARATH Dihydroorotate dehydrogenase (quinone), mitochondrial
OS=Arabidopsis thaliana GN=PYRD PE=1 SV=2
Length = 460
Score = 205 bits (521), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 149/221 (67%), Gaps = 5/221 (2%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
++L + K D D V+G+ A Y V+NVSSPNTA LR LQ + QLK L+K V
Sbjct: 242 VNLGKNKTSEDAAADYVQGVHNLSQYADYLVINVSSPNTAGLRMLQGRKQLKDLVKKVQA 301
Query: 170 TRN--QLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDA 227
R+ Q + PP+LVKIAPDLS E +DIA V L +DGLI+SNTTV R + +
Sbjct: 302 ARDEMQWGDEGPPPLLVKIAPDLSRGELEDIAAVAL--ALHLDGLIISNTTVSRPDAVSN 359
Query: 228 R-YKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286
ETGGLSG+PL ST ++ +MY LT+GK+P+IG GGV SG+DA++KI+AGA+LVQ
Sbjct: 360 NPVATETGGLSGKPLFALSTNMLRDMYTLTRGKIPLIGCGGVSSGEDAYKKIRAGATLVQ 419
Query: 287 IYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
+YT F Y GP L+ +IK EL + L+++G+ S+ +A+GA H+
Sbjct: 420 LYTGFAYGGPALIPQIKEELVKCLERDGFKSIHEAIGADHR 460
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAL--KPLPPI 102
++ G+ A Y V+NVSSPNTA LR LQ + QLK L+K V R+++ + PP+
Sbjct: 257 YVQGVHNLSQYADYLVINVSSPNTAGLRMLQGRKQLKDLVKKVQAARDEMQWGDEGPPPL 316
Query: 103 LVKIAPDLSLDEKKDIADVVL 123
LVKIAPDLS E +DIA V L
Sbjct: 317 LVKIAPDLSRGELEDIAAVAL 337
>sp|A7HQ77|PYRD_PARL1 Dihydroorotate dehydrogenase (quinone) OS=Parvibaculum
lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
GN=pyrD PE=3 SV=1
Length = 348
Score = 194 bits (492), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 139/215 (64%), Gaps = 7/215 (3%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD AD + D GI F +A YF VN+SSPNT LR LQ K +L++L+ V+
Sbjct: 137 VNIGANKDAADRIADYEAGIRAFEGLASYFTVNISSPNTPGLRALQNKAELQNLVARVLA 196
Query: 170 TRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY 229
R K P+L+KIAPDL+ +E DIA+V L+ +DGLIVSNTT+ R +
Sbjct: 197 AR-----KGKTPVLLKIAPDLNAEELGDIAEVALEQG--LDGLIVSNTTIAREGLVSGVN 249
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
ETGGLSG PL ST ++ +MY+LT G+LP++GVGG+ S DA+ KI+AGASLVQ+Y+
Sbjct: 250 ANETGGLSGAPLFPMSTAVLRDMYRLTGGRLPLVGVGGISSADDAYAKIRAGASLVQLYS 309
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGA 324
+ Y GPPLV RIK L L +G+ + AVGA
Sbjct: 310 ALTYDGPPLVARIKQGLAARLAADGFAHLKDAVGA 344
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 11/114 (9%)
Query: 11 RILSRVFRSGEWGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDVAHYFVVNVSSPNTAN 70
R+L+R R G G N + A + + GI F +A YF VN+SSPNT
Sbjct: 124 RLLARRKRPGILGVNIGAN------KDAADRIADYEAGIRAFEGLASYFTVNISSPNTPG 177
Query: 71 LRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLD 124
LR LQ K +L++L+ V+ R K P+L+KIAPDL+ +E DIA+V L+
Sbjct: 178 LRALQNKAELQNLVARVLAAR-----KGKTPVLLKIAPDLNAEELGDIAEVALE 226
>sp|Q2RX27|PYRD_RHORT Dihydroorotate dehydrogenase (quinone) OS=Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255) GN=pyrD PE=3 SV=1
Length = 367
Score = 192 bits (488), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 143/218 (65%), Gaps = 2/218 (0%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
++L + K D D GI K +A Y V+NVSSPNT LR LQ ++ L L+
Sbjct: 137 INLGKNKTTEDAAGDYEAGIAKLAPLADYLVINVSSPNTPGLRALQGREPLSLLIARARA 196
Query: 170 TRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY 229
+ PP+L+K+APDL+ ++ DIA+V L +DGLI +NTT+ R + L + +
Sbjct: 197 ALDAACPGLRPPLLLKVAPDLTDEDMADIAEVALGGG--LDGLICTNTTIARPKSLVSDH 254
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
ETGGLSG PLR ++ ++I+ +Y LTKG LP+IGVGG+ G +A+ +I+AGASL+QIY+
Sbjct: 255 AGETGGLSGLPLRYRARQVIARLYGLTKGALPLIGVGGIGDGAEAYARIRAGASLIQIYS 314
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
+ VY GP LV RIK +L + L+ +G+ SV++AVGA H+
Sbjct: 315 ALVYEGPGLVGRIKRDLAQRLRADGFASVAEAVGADHR 352
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%)
Query: 48 GILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIA 107
GI K +A Y V+NVSSPNT LR LQ ++ L L+ + PP+L+K+A
Sbjct: 155 GIAKLAPLADYLVINVSSPNTPGLRALQGREPLSLLIARARAALDAACPGLRPPLLLKVA 214
Query: 108 PDLSLDEKKDIADVVL 123
PDL+ ++ DIA+V L
Sbjct: 215 PDLTDEDMADIAEVAL 230
>sp|A7IBC2|PYRD_XANP2 Dihydroorotate dehydrogenase (quinone) OS=Xanthobacter
autotrophicus (strain ATCC BAA-1158 / Py2) GN=pyrD PE=3
SV=1
Length = 357
Score = 191 bits (485), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 142/215 (66%), Gaps = 4/215 (1%)
Query: 111 SLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVET 170
++ + K+ D + D G+ +A Y V N+SSPNT LR LQA+ +++ LL V+
Sbjct: 141 NVGKNKESEDALEDYGAGVSATCRLADYLVCNISSPNTPGLRALQARAEMETLLAHVISV 200
Query: 171 RNQLAVKPLP--PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDAR 228
RN P P+LVK+APDL D+A+ L VDG+I+ NTT+ R L ++
Sbjct: 201 RNASMPDPAARTPLLVKVAPDLDDAALADVAEASL--ATGVDGIIMGNTTLSRPASLQSK 258
Query: 229 YKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288
+K+ETGGLSG+PL STE + +Y+L G+LPIIGVGG+ SG DA+ K++AGASLVQIY
Sbjct: 259 FKDETGGLSGKPLLALSTERLGALYRLVGGRLPIIGVGGIASGADAYAKVRAGASLVQIY 318
Query: 289 TSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVG 323
++ V+HGP LVTRIK++L L+ +G+ S++ AVG
Sbjct: 319 SALVFHGPGLVTRIKTDLAARLKADGFASIADAVG 353
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 16 VFRSGEWGCTPTHNMLSSFA---RMRAWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLR 72
VFR G+ + H ++ + + L+ + G+ +A Y V N+SSPNT LR
Sbjct: 123 VFRLGQRRASGKHGIVGANVGKNKESEDALEDYGAGVSATCRLADYLVCNISSPNTPGLR 182
Query: 73 KLQAKDQLKHLLKTVVETRNQLALKPLP--PILVKIAPDLSLDEKKDIADVVLDS-VKGI 129
LQA+ +++ LL V+ RN P P+LVK+APDL D+A+ L + V GI
Sbjct: 183 ALQARAEMETLLAHVISVRNASMPDPAARTPLLVKVAPDLDDAALADVAEASLATGVDGI 242
Query: 130 L 130
+
Sbjct: 243 I 243
>sp|A8HZX8|PYRD_AZOC5 Dihydroorotate dehydrogenase (quinone) OS=Azorhizobium caulinodans
(strain ATCC 43989 / DSM 5975 / ORS 571) GN=pyrD PE=3
SV=1
Length = 356
Score = 188 bits (477), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 143/218 (65%), Gaps = 8/218 (3%)
Query: 111 SLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVET 170
++ + K+ D D V G+ +A Y V NVSSPNT LR LQA+ ++ L+ +
Sbjct: 140 NVGKNKETEDASEDYVAGVSATCRLADYIVCNVSSPNTPGLRLLQARTEMSALIGAALSA 199
Query: 171 RNQ----LAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLD 226
RN A +P P+LVK+APDL + +A+V L+ VDG+I+ NTT+ R + L
Sbjct: 200 RNDSLPDAATRP--PLLVKVAPDLDDAGLEAVAEVTLE--LGVDGIIMGNTTISRPDSLR 255
Query: 227 ARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286
+R+K ETGGLSG PL STE + +Y+L +G++P++G GG+ SG DA+ KI+AGASLVQ
Sbjct: 256 SRHKGETGGLSGAPLFTLSTERLGALYRLVRGRIPLVGAGGIASGADAYAKIRAGASLVQ 315
Query: 287 IYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGA 324
+Y++ V+HGP LV RIK++L L+ +G+ SV+ AVGA
Sbjct: 316 LYSALVFHGPALVPRIKADLAARLKADGFRSVADAVGA 353
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 7/91 (7%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRN----QLALKPLP 100
++ G+ +A Y V NVSSPNT LR LQA+ ++ L+ + RN A + P
Sbjct: 154 YVAGVSATCRLADYIVCNVSSPNTPGLRLLQARTEMSALIGAALSARNDSLPDAATR--P 211
Query: 101 PILVKIAPDLSLDEKKDIADVVLD-SVKGIL 130
P+LVK+APDL + +A+V L+ V GI+
Sbjct: 212 PLLVKVAPDLDDAGLEAVAEVTLELGVDGII 242
>sp|Q7NC99|PYRD_GLOVI Dihydroorotate dehydrogenase (quinone) OS=Gloeobacter violaceus
(strain PCC 7421) GN=pyrD PE=3 SV=1
Length = 353
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 132/207 (63%), Gaps = 12/207 (5%)
Query: 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKP 178
+D L S + + GD YFVVNVSSPNT LR+LQ D+L +L R Q A +
Sbjct: 157 SDDYLYSFERLYHLGD---YFVVNVSSPNTPGLRELQQADRLGEIL-----ARLQCANRE 208
Query: 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG 238
P+LVKIAPDL D + D+ + ++ G+I +NTT+ R +ETGGLSG
Sbjct: 209 SKPLLVKIAPDLGWDAVDAVVDLC--GEHRLAGVIATNTTIARSGLRSD--LQETGGLSG 264
Query: 239 EPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPL 298
PLRN+STE+I ++ T+G+LPI+GVGG+FSG+DA+EKI GASL+Q+YT ++Y GP +
Sbjct: 265 APLRNRSTEVIGHIWGRTRGQLPIVGVGGIFSGEDAWEKIAHGASLLQVYTGWIYEGPWM 324
Query: 299 VTRIKSELEELLQKEGYNSVSQAVGAA 325
V RI + L L++ G+ + QA G A
Sbjct: 325 VRRILASLATRLERSGFEHLQQATGCA 351
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 55 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDE 114
+ YFVVNVSSPNT LR+LQ D+L +L R Q A + P+LVKIAPDL D
Sbjct: 170 LGDYFVVNVSSPNTPGLRELQQADRLGEIL-----ARLQCANRESKPLLVKIAPDLGWDA 224
Query: 115 KKDIADVV 122
+ D+
Sbjct: 225 VDAVVDLC 232
>sp|Q11M76|PYRD_MESSB Dihydroorotate dehydrogenase (quinone) OS=Mesorhizobium sp. (strain
BNC1) GN=pyrD PE=3 SV=1
Length = 363
Score = 174 bits (442), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 135/213 (63%), Gaps = 5/213 (2%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ +D +D + D +G+ F VA Y +N+SSPNT LR LQ ++ L LL+ V+
Sbjct: 139 VNIGANRDSSDRMADYEEGVRTFAAVASYLTINISSPNTTGLRGLQDRENLSELLQRVMR 198
Query: 170 TRNQLA--VKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDA 227
RN+ A +K P+ +KIAPDLS + DIA VL+ +DGLIVSNTT+ R E + A
Sbjct: 199 VRNEQAALIKRKVPVFLKIAPDLSEEALADIAQEVLEKG--LDGLIVSNTTLSR-EGVSA 255
Query: 228 RYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287
ETGGLSGEPL +ST ++++M +L LPIIGVGGV S + A EK++AGA LVQ+
Sbjct: 256 PAASETGGLSGEPLFERSTIVLAKMRRLVGPALPIIGVGGVHSAETALEKMRAGADLVQL 315
Query: 288 YTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQ 320
YT V+ GP L RI S L + G NS+++
Sbjct: 316 YTGMVFAGPGLPARIVSRLAAYAEANGLNSIAE 348
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 48 GILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA--LKPLPPILVK 105
G+ F VA Y +N+SSPNT LR LQ ++ L LL+ V+ RN+ A +K P+ +K
Sbjct: 157 GVRTFAAVASYLTINISSPNTTGLRGLQDRENLSELLQRVMRVRNEQAALIKRKVPVFLK 216
Query: 106 IAPDLSLDEKKDIADVVLD 124
IAPDLS + DIA VL+
Sbjct: 217 IAPDLSEEALADIAQEVLE 235
>sp|A5EA61|PYRD_BRASB Dihydroorotate dehydrogenase (quinone) OS=Bradyrhizobium sp.
(strain BTAi1 / ATCC BAA-1182) GN=pyrD PE=3 SV=1
Length = 364
Score = 174 bits (441), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 136/217 (62%), Gaps = 4/217 (1%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD AD V D V+ I F VA YF VN+SSPNT LR LQ QL LL V+E
Sbjct: 138 VNVGANKDSADRVADYVRLIETFAPVASYFTVNISSPNTPGLRNLQQAAQLNELLSKVLE 197
Query: 170 TRNQLAVKPL-PPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDAR 228
R+++ K P+L+KIAPDLSL E D+ V VDG+IVSNTT+ R L +
Sbjct: 198 ARDRVRRKAGDTPVLLKIAPDLSLAELDDVVHVA--RSRGVDGMIVSNTTLARPNSLREQ 255
Query: 229 YK-EETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287
+ +E GGLSG PL ST +++E + +G P+IGVGG+ SG A KI+AGASL+Q+
Sbjct: 256 LRAKEQGGLSGRPLFRLSTRMVAETFVRVEGAFPLIGVGGIDSGGAALTKIRAGASLIQL 315
Query: 288 YTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGA 324
Y+S VY G LV IK++L L + G +S+S+ VGA
Sbjct: 316 YSSLVYKGLGLVESIKADLTSTLLRTGRDSLSEIVGA 352
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 49 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPL-PPILVKIA 107
I F VA YF VN+SSPNT LR LQ QL LL V+E R+++ K P+L+KIA
Sbjct: 157 IETFAPVASYFTVNISSPNTPGLRNLQQAAQLNELLSKVLEARDRVRRKAGDTPVLLKIA 216
Query: 108 PDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLR-KLQAKDQ 159
PDLSL E LD V + + V V N + +LR +L+AK+Q
Sbjct: 217 PDLSLAE--------LDDVVHVARSRGVDGMIVSNTTLARPNSLREQLRAKEQ 261
>sp|B9JR03|PYRD_AGRVS Dihydroorotate dehydrogenase (quinone) OS=Agrobacterium vitis
(strain S4 / ATCC BAA-846) GN=pyrD PE=3 SV=1
Length = 363
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 129/213 (60%), Gaps = 4/213 (1%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD D + D V GI +F +A YF N+SSPNT LR LQAKD L HLL V+
Sbjct: 139 INIGANKDAEDRIADYVTGIRRFYPLASYFTANISSPNTPGLRDLQAKDSLGHLLDAVLA 198
Query: 170 TRNQLAVKP--LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDA 227
R A K P+ +KIAPDL+ + DIA+VVL +DGLIVSNTT+ R D
Sbjct: 199 ARADEAAKAGRRVPVFLKIAPDLTEEGMDDIAEVVLARD--LDGLIVSNTTLSRDGLTDT 256
Query: 228 RYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287
R E GGLSG+PL KST +++ M LPIIGVGGV S + A EKIKAGA LVQ+
Sbjct: 257 RQAGEAGGLSGKPLFEKSTAVLARMRHRVGSALPIIGVGGVSSAQTALEKIKAGADLVQL 316
Query: 288 YTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQ 320
Y+ VY GP L I L + L ++G S++Q
Sbjct: 317 YSCMVYEGPGLPAAIVKGLSQALDRDGIASIAQ 349
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 6 ESTCSRILSRVFRSGEWGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDVAHYFVVNVSS 65
E+ +R+ +R R G G N + R+ +V GI +F +A YF N+SS
Sbjct: 121 EAAFARLSARASRPGVVGINIGANK-DAEDRIADYVT-----GIRRFYPLASYFTANISS 174
Query: 66 PNTANLRKLQAKDQLKHLLKTVVETRNQLALKP--LPPILVKIAPDLSLDEKKDIADVVL 123
PNT LR LQAKD L HLL V+ R A K P+ +KIAPDL+ + DIA+VVL
Sbjct: 175 PNTPGLRDLQAKDSLGHLLDAVLAARADEAAKAGRRVPVFLKIAPDLTEEGMDDIAEVVL 234
>sp|Q1J132|PYRD_DEIGD Dihydroorotate dehydrogenase (quinone) OS=Deinococcus geothermalis
(strain DSM 11300) GN=pyrD PE=3 SV=1
Length = 361
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 132/206 (64%), Gaps = 5/206 (2%)
Query: 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPL 179
+ V D + + VA FVVNVSSPNT LR LQA L L++ V++ V+ L
Sbjct: 156 EAVQDYREAVRVLQAVADAFVVNVSSPNTPGLRALQAAGDLAALVRAVLDEVEAGRVRTL 215
Query: 180 --PPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLS 237
PP+LVK+APDL + + VL++ DGLI+ NTT+ R E L + ETGGLS
Sbjct: 216 SRPPVLVKLAPDLHPADFEASVGAVLEAGA--DGLIIGNTTL-RREGLTHPRRGETGGLS 272
Query: 238 GEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPP 297
G PL +STEL+ Y+LT+G++PI+GVGG+F+ +DA+ KI+AGA LV++YT+ +Y GP
Sbjct: 273 GRPLTARSTELVRAAYRLTRGRMPIVGVGGIFTAEDAYAKIRAGARLVEVYTALIYEGPG 332
Query: 298 LVTRIKSELEELLQKEGYNSVSQAVG 323
L R+ +L LL ++G +++AVG
Sbjct: 333 LPARLNRDLARLLARDGVRHLTEAVG 358
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 55 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPL--PPILVKIAPDLSL 112
VA FVVNVSSPNT LR LQA L L++ V++ ++ L PP+LVK+APDL
Sbjct: 171 VADAFVVNVSSPNTPGLRALQAAGDLAALVRAVLDEVEAGRVRTLSRPPVLVKLAPDLHP 230
Query: 113 DEKKDIADVVLDSVKGILKFGD 134
+ + VL++ L G+
Sbjct: 231 ADFEASVGAVLEAGADGLIIGN 252
>sp|A4Z2G7|PYRD_BRASO Dihydroorotate dehydrogenase (quinone) OS=Bradyrhizobium sp.
(strain ORS278) GN=pyrD PE=3 SV=1
Length = 364
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 135/217 (62%), Gaps = 4/217 (1%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD AD V D V+ I F VA YF VN+SSPNT LR LQ QL LL V+E
Sbjct: 138 VNVGANKDSADRVADYVRLIETFAPVASYFTVNISSPNTPGLRNLQQASQLDDLLTKVLE 197
Query: 170 TRNQLAVKPL-PPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDAR 228
R+++ K P+L+KIAPDLSL E D+ V VDG+IVSNTT+ R L +
Sbjct: 198 ARDRVRRKAGDTPVLLKIAPDLSLAELDDVVHVA--RSRGVDGMIVSNTTLARPNSLREQ 255
Query: 229 YK-EETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287
+ +E GGLSG PL ST +++E + +G P+IGVGG+ +G A KI+AGASL+Q+
Sbjct: 256 MRAKEQGGLSGRPLFRLSTRMVAETFVRVEGAFPLIGVGGIDTGGAALTKIRAGASLIQL 315
Query: 288 YTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGA 324
Y+S VY G LV IK++L L + G S+S+ VGA
Sbjct: 316 YSSLVYKGLGLVESIKADLTSTLLRTGRESLSEIVGA 352
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 49 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPL-PPILVKIA 107
I F VA YF VN+SSPNT LR LQ QL LL V+E R+++ K P+L+KIA
Sbjct: 157 IETFAPVASYFTVNISSPNTPGLRNLQQASQLDDLLTKVLEARDRVRRKAGDTPVLLKIA 216
Query: 108 PDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLR-KLQAKDQ 159
PDLSL E LD V + + V V N + +LR +++AK+Q
Sbjct: 217 PDLSLAE--------LDDVVHVARSRGVDGMIVSNTTLARPNSLREQMRAKEQ 261
>sp|B9J901|PYRD_AGRRK Dihydroorotate dehydrogenase (quinone) OS=Agrobacterium radiobacter
(strain K84 / ATCC BAA-868) GN=pyrD PE=3 SV=1
Length = 362
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 139/231 (60%), Gaps = 4/231 (1%)
Query: 92 NQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANL 151
++ AL+ L PI +++ KD AD + D V GI +F VA YF N+SSPNT L
Sbjct: 120 HEAALRRLQPIRGNGIIGVNIGANKDSADRIADYVAGIRRFYSVARYFTANISSPNTPGL 179
Query: 152 RKLQAKDQLKHLLKTVVETRNQLAVKPLP--PILVKIAPDLSLDEKKDIADVVLDSKCKV 209
R LQA++ L LL V+ R+ A K P+ +KIAPDL+ + DIA VL +
Sbjct: 180 RDLQARESLSALLSAVLAARDDEAAKAGKKIPVFLKIAPDLTEEGMDDIAAEVL--AHAL 237
Query: 210 DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269
DGLIVSNTT+ R D +E GGLSG+P+ +ST ++++M + LPIIGVGGV
Sbjct: 238 DGLIVSNTTLSRDGLKDQVQAKEAGGLSGKPVFERSTVVLAKMRRRVGAALPIIGVGGVS 297
Query: 270 SGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQ 320
S + A EKI+AGA LVQ+Y+ VY GP L R+ + L +LL +E S+ +
Sbjct: 298 SAETALEKIRAGADLVQLYSCMVYEGPGLPGRVVAGLSKLLDRERVASIRE 348
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLP--PI 102
++ GI +F VA YF N+SSPNT LR LQA++ L LL V+ R+ A K P+
Sbjct: 153 YVAGIRRFYSVARYFTANISSPNTPGLRDLQARESLSALLSAVLAARDDEAAKAGKKIPV 212
Query: 103 LVKIAPDLSLDEKKDIADVVL 123
+KIAPDL+ + DIA VL
Sbjct: 213 FLKIAPDLTEEGMDDIAAEVL 233
>sp|Q07TQ6|PYRD_RHOP5 Dihydroorotate dehydrogenase (quinone) OS=Rhodopseudomonas
palustris (strain BisA53) GN=pyrD PE=3 SV=1
Length = 364
Score = 171 bits (434), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 135/218 (61%), Gaps = 6/218 (2%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD D V D V+ I F VA YF VNVSSPNT LR LQ L LL V+E
Sbjct: 138 VNVGANKDSEDRVADYVRLIEMFAPVASYFTVNVSSPNTPGLRNLQQAAALDDLLAKVIE 197
Query: 170 TRNQL-AVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYL--D 226
R ++ A+ P+L+KIAPDL+L+E D+ + KVDG+IV+NTT+ R L
Sbjct: 198 ARERVRAIAGDTPVLLKIAPDLTLNELDDVVHIA--RSRKVDGMIVANTTLSRTHTLREQ 255
Query: 227 ARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286
AR KE+ GGLSG PL ST +++E Y +G P+IGVGG+ SG A KI+AGASL+Q
Sbjct: 256 ARAKEQ-GGLSGRPLFRLSTRMVAETYVRAEGAFPLIGVGGIDSGGAALTKIRAGASLIQ 314
Query: 287 IYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGA 324
+Y++ +Y G LV IK +L L + G + +S+ VGA
Sbjct: 315 LYSALIYKGLGLVESIKQDLASTLLRTGRDQLSEIVGA 352
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 49 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL-ALKPLPPILVKIA 107
I F VA YF VNVSSPNT LR LQ L LL V+E R ++ A+ P+L+KIA
Sbjct: 157 IEMFAPVASYFTVNVSSPNTPGLRNLQQAAALDDLLAKVIEARERVRAIAGDTPVLLKIA 216
Query: 108 PDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLR-KLQAKDQ 159
PDL+L+E LD V I + V V N + T LR + +AK+Q
Sbjct: 217 PDLTLNE--------LDDVVHIARSRKVDGMIVANTTLSRTHTLREQARAKEQ 261
>sp|Q2IR55|PYRD_RHOP2 Dihydroorotate dehydrogenase (quinone) OS=Rhodopseudomonas
palustris (strain HaA2) GN=pyrD PE=3 SV=1
Length = 364
Score = 171 bits (433), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 129/212 (60%), Gaps = 4/212 (1%)
Query: 115 KKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL 174
KD D V D V I F VA YF VNVSSPNT LR LQ L LL V+E R ++
Sbjct: 143 NKDSTDRVADYVSLIETFAPVASYFTVNVSSPNTPGLRNLQQAAALDDLLARVIEARERV 202
Query: 175 -AVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYK-EE 232
A P+L+KIAPDL+L E D+ + +VDG+IV+NTT+ R L R + E
Sbjct: 203 RASAGDTPVLLKIAPDLTLSELDDVVHIA--RSRRVDGMIVANTTLSRSPMLRERTRLNE 260
Query: 233 TGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292
GGLSG PL ST +++E Y +G P+IGVGG+ SG A KI+AGASLVQ+Y++ +
Sbjct: 261 QGGLSGRPLFRLSTRMVAETYVRAEGAFPLIGVGGIDSGGAALTKIRAGASLVQLYSALI 320
Query: 293 YHGPPLVTRIKSELEELLQKEGYNSVSQAVGA 324
Y G LV IK++L L + G +S+S+ VGA
Sbjct: 321 YKGLGLVDSIKADLASTLLRTGRDSLSEIVGA 352
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 49 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL-ALKPLPPILVKIA 107
I F VA YF VNVSSPNT LR LQ L LL V+E R ++ A P+L+KIA
Sbjct: 157 IETFAPVASYFTVNVSSPNTPGLRNLQQAAALDDLLARVIEARERVRASAGDTPVLLKIA 216
Query: 108 PDLSLDEKKDIADV 121
PDL+L E D+ +
Sbjct: 217 PDLTLSELDDVVHI 230
>sp|Q13D13|PYRD_RHOPS Dihydroorotate dehydrogenase (quinone) OS=Rhodopseudomonas
palustris (strain BisB5) GN=pyrD PE=3 SV=1
Length = 364
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 134/219 (61%), Gaps = 8/219 (3%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD +D V D V I F VA YF VNVSSPNT LR LQ L LL V+E
Sbjct: 138 VNVGANKDSSDRVADYVALIETFAPVASYFTVNVSSPNTPGLRNLQQAAALDDLLARVIE 197
Query: 170 TRNQLAVKPLP---PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLD 226
R + V+P P+L+KIAPDL+L E D+ + KVDG+IV+NTT+ R L
Sbjct: 198 ARER--VRPSAGDTPVLLKIAPDLTLGELDDVVHIA--RSRKVDGMIVANTTLSRSPLLR 253
Query: 227 ARYK-EETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLV 285
R + E GGLSG PL ST +++E Y +G P+IGVGG+ SG A KI+AGASLV
Sbjct: 254 ERTRMNEQGGLSGRPLFRLSTRMVAETYVRAEGAFPLIGVGGIDSGGAALTKIRAGASLV 313
Query: 286 QIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGA 324
Q+Y++ +Y G LV IK++L L + G +S+++ VGA
Sbjct: 314 QLYSALIYKGLGLVESIKTDLASTLLRTGRDSLAEIVGA 352
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 6 ESTCSRILSRVFRSGEWGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDVAHYFVVNVSS 65
E+ R+ +R + G G N SS R+ +V I F VA YF VNVSS
Sbjct: 120 EAVLRRLAARAQQGGILGVNVGANKDSS-DRVADYVAL-----IETFAPVASYFTVNVSS 173
Query: 66 PNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLP---PILVKIAPDLSLDEKKDIADV 121
PNT LR LQ L LL V+E R + ++P P+L+KIAPDL+L E D+ +
Sbjct: 174 PNTPGLRNLQQAAALDDLLARVIEARER--VRPSAGDTPVLLKIAPDLTLGELDDVVHI 230
>sp|A6WVY1|PYRD_OCHA4 Dihydroorotate dehydrogenase (quinone) OS=Ochrobactrum anthropi
(strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=pyrD PE=3
SV=1
Length = 364
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 132/212 (62%), Gaps = 4/212 (1%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD D + D V GI +F +A YF VN+SSPNT LR LQA+D L+ LL V+E
Sbjct: 138 VNIGANKDAEDRIADYVAGIRRFYQLARYFTVNISSPNTPGLRNLQARDSLRELLSRVLE 197
Query: 170 TRNQLA--VKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDA 227
RN+ P+ +KIAPDL+ +E DIA ++ K+DG+I+SNTT+ R A
Sbjct: 198 ARNEEGKMCTLKRPVFLKIAPDLANEELDDIAAEA--TEQKLDGIIISNTTLSRAGLKSA 255
Query: 228 RYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287
++ETGGLSG PL ++ST +++ M + +P+IGVGGV S + A KIKAGA LVQ+
Sbjct: 256 ENRDETGGLSGAPLFDRSTIVLARMRERVGPDMPLIGVGGVDSAETALTKIKAGADLVQL 315
Query: 288 YTSFVYHGPPLVTRIKSELEELLQKEGYNSVS 319
YT +Y GP L I L +++EG +++
Sbjct: 316 YTGLIYRGPNLPAEIVRGLSAAVKREGVTNIA 347
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 20/153 (13%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQ----LALKPLP 100
++ GI +F +A YF VN+SSPNT LR LQA+D L+ LL V+E RN+ LK
Sbjct: 153 YVAGIRRFYQLARYFTVNISSPNTPGLRNLQARDSLRELLSRVLEARNEEGKMCTLK--R 210
Query: 101 PILVKIAPDLSLDEKKDI-ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQ 159
P+ +KIAPDL+ +E DI A+ + GI +++ ++ + A L+ + +D+
Sbjct: 211 PVFLKIAPDLANEELDDIAAEATEQKLDGI----------IISNTTLSRAGLKSAENRDE 260
Query: 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSL 192
L + R+ + L + ++ PD+ L
Sbjct: 261 TGGLSGAPLFDRSTIV---LARMRERVGPDMPL 290
>sp|P32747|PYRD_SCHPO Dihydroorotate dehydrogenase (quinone), mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ura3 PE=1 SV=1
Length = 443
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/184 (50%), Positives = 121/184 (65%), Gaps = 4/184 (2%)
Query: 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPIL 183
D V+G+ FG+ A V+NVSSPNT LR LQ K L LL VV RN+L P PP+L
Sbjct: 246 DYVEGVRTFGNFADILVINVSSPNTPGLRNLQKKSALSTLLTAVVSERNKLN-SPHPPVL 304
Query: 184 VKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDA-RYKEETGGLSGEPLR 242
VKIAPDL+ +E DIADV+ KCK+DG+IV NTTV R + L + + EETGGLSG PL+
Sbjct: 305 VKIAPDLNEEELTDIADVL--KKCKIDGVIVGNTTVQRPKTLKSTSHVEETGGLSGPPLK 362
Query: 243 NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRI 302
+ + + K +PIIG GG+ SGKDA E +AGA++VQ+YT+ Y GP + +I
Sbjct: 363 PIALNTLRTLRKHLSSDIPIIGCGGISSGKDAIEYARAGATMVQVYTALGYDGPVIAHKI 422
Query: 303 KSEL 306
K E+
Sbjct: 423 KQEI 426
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 42 LQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPP 101
++ ++ G+ FG+ A V+NVSSPNT LR LQ K L LL VV RN+L P PP
Sbjct: 244 IEDYVEGVRTFGNFADILVINVSSPNTPGLRNLQKKSALSTLLTAVVSERNKLN-SPHPP 302
Query: 102 ILVKIAPDLSLDEKKDIADVV 122
+LVKIAPDL+ +E DIADV+
Sbjct: 303 VLVKIAPDLNEEELTDIADVL 323
>sp|B5ZPH6|PYRD_RHILW Dihydroorotate dehydrogenase (quinone) OS=Rhizobium leguminosarum
bv. trifolii (strain WSM2304) GN=pyrD PE=3 SV=1
Length = 362
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 126/206 (61%), Gaps = 4/206 (1%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD D + D V GI +F VA YF N+SSPNT LR LQA++ L LL +V+
Sbjct: 138 VNIGANKDSEDRIADYVAGIRRFHSVARYFTANISSPNTPGLRDLQARESLAALLSSVLA 197
Query: 170 TRNQLAVKPLP--PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDA 227
R+++A P+ +KIAPDL+ + DIA L +DGLIVSNTT+ R D
Sbjct: 198 ARDEVAAASGRKVPVFLKIAPDLTEEGMDDIAAEALAHA--LDGLIVSNTTLSRDGLKDQ 255
Query: 228 RYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287
R +ETGGLSG PL KST +++ M K LPIIGVGGV S + A EKI+AGA LVQ+
Sbjct: 256 RQAKETGGLSGVPLFEKSTAVLARMRKRVGAALPIIGVGGVSSAETALEKIRAGADLVQL 315
Query: 288 YTSFVYHGPPLVTRIKSELEELLQKE 313
Y+ VY GP L I L +L+ +E
Sbjct: 316 YSCMVYEGPGLPGDIVRGLSKLMDRE 341
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLP--PI 102
++ GI +F VA YF N+SSPNT LR LQA++ L LL +V+ R+++A P+
Sbjct: 153 YVAGIRRFHSVARYFTANISSPNTPGLRDLQARESLAALLSSVLAARDEVAAASGRKVPV 212
Query: 103 LVKIAPDLSLDEKKDIA 119
+KIAPDL+ + DIA
Sbjct: 213 FLKIAPDLTEEGMDDIA 229
>sp|Q92S77|PYRD_RHIME Dihydroorotate dehydrogenase (quinone) OS=Rhizobium meliloti
(strain 1021) GN=pyrD PE=3 SV=1
Length = 362
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 126/211 (59%), Gaps = 4/211 (1%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD AD + D V GI F VA YF N+SSPNT LR LQA++ L LL V+
Sbjct: 138 VNIGANKDSADRIADYVTGIRTFYAVARYFTANISSPNTPGLRDLQARESLSALLSAVLA 197
Query: 170 TRNQLAVKP--LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDA 227
R+ A K P+ +KIAPDL+ + DIA VL +DGLIVSNTT+ R D
Sbjct: 198 ARDDEARKGGRQVPVFLKIAPDLTEEGMDDIAAEVLAHG--LDGLIVSNTTLSREGLKDR 255
Query: 228 RYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287
R E GGLSG+PL KST +++ M K LPIIGVGGV S + A EKI+AGA LVQ+
Sbjct: 256 RQANEAGGLSGKPLFEKSTAVLARMRKRVGPHLPIIGVGGVCSAETAAEKIRAGADLVQL 315
Query: 288 YTSFVYHGPPLVTRIKSELEELLQKEGYNSV 318
Y+ +Y GP L RI L L ++E S+
Sbjct: 316 YSCMIYEGPGLPGRIVRGLSALCEREKLASI 346
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKP--LPPI 102
++ GI F VA YF N+SSPNT LR LQA++ L LL V+ R+ A K P+
Sbjct: 153 YVTGIRTFYAVARYFTANISSPNTPGLRDLQARESLSALLSAVLAARDDEARKGGRQVPV 212
Query: 103 LVKIAPDLSLDEKKDIADVVL 123
+KIAPDL+ + DIA VL
Sbjct: 213 FLKIAPDLTEEGMDDIAAEVL 233
>sp|B3QEE3|PYRD_RHOPT Dihydroorotate dehydrogenase (quinone) OS=Rhodopseudomonas
palustris (strain TIE-1) GN=pyrD PE=3 SV=1
Length = 364
Score = 168 bits (425), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 133/217 (61%), Gaps = 4/217 (1%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD D V D VK I F +A YF VNVSSPNT LR LQ L LL V++
Sbjct: 138 VNVGANKDSDDRVADYVKLIETFAPLASYFTVNVSSPNTPGLRNLQQAAALDDLLARVID 197
Query: 170 TRNQL-AVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDAR 228
R ++ A P+L+KIAPDLSL E D+ + +VDG+IV+NTT+ R L R
Sbjct: 198 ARERVRAAAGDTPVLLKIAPDLSLGELDDVVHIA--RSRRVDGMIVANTTLSRSPTLRER 255
Query: 229 YK-EETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287
K E GGLSG PL ST +++E + +G P+IGVGG+ SG A KI+AGA+LVQ+
Sbjct: 256 TKMNEQGGLSGRPLFRLSTRMVAETFVRAEGAFPLIGVGGIDSGGAALTKIRAGATLVQL 315
Query: 288 YTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGA 324
Y++ VY G LV IK++L L + G +S+++ VGA
Sbjct: 316 YSALVYKGLGLVESIKADLASTLLRTGRDSLAEIVGA 352
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 49 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL-ALKPLPPILVKIA 107
I F +A YF VNVSSPNT LR LQ L LL V++ R ++ A P+L+KIA
Sbjct: 157 IETFAPLASYFTVNVSSPNTPGLRNLQQAAALDDLLARVIDARERVRAAAGDTPVLLKIA 216
Query: 108 PDLSLDEKKDIADV 121
PDLSL E D+ +
Sbjct: 217 PDLSLGELDDVVHI 230
>sp|Q98B89|PYRD_RHILO Dihydroorotate dehydrogenase (quinone) OS=Rhizobium loti (strain
MAFF303099) GN=pyrD PE=3 SV=1
Length = 359
Score = 168 bits (425), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 129/211 (61%), Gaps = 4/211 (1%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD AD + D +G+ +F A Y VN+SSPNT LR +QA++QL LL V+
Sbjct: 138 VNIGANKDSADRIGDYERGVGRFARHASYLTVNISSPNTPGLRNMQAREQLGELLSRVMA 197
Query: 170 TRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY 229
R A +P PI +KIAPDL E +DIA V++ + +DG+IVSNTT+ R
Sbjct: 198 ARASAATQP--PIFLKIAPDLVEAELEDIAAEVVEKR--IDGIIVSNTTISRPPLRSGDV 253
Query: 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289
ETGGLSG+PL +ST ++++M KL + IIGVGGV S + A EKI+AGA LVQ+YT
Sbjct: 254 GRETGGLSGKPLFERSTIVLAKMRKLLGPGIAIIGVGGVDSAETALEKIRAGADLVQLYT 313
Query: 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQ 320
+Y GP L RI + + + E S+ +
Sbjct: 314 GMIYAGPALPGRIVAGMARFCETERLKSIGE 344
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 48 GILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIA 107
G+ +F A Y VN+SSPNT LR +QA++QL LL V+ R A + PPI +KIA
Sbjct: 156 GVGRFARHASYLTVNISSPNTPGLRNMQAREQLGELLSRVMAARASAATQ--PPIFLKIA 213
Query: 108 PDLSLDEKKDI-ADVVLDSVKGIL 130
PDL E +DI A+VV + GI+
Sbjct: 214 PDLVEAELEDIAAEVVEKRIDGII 237
>sp|B7KIU7|PYRD_CYAP7 Dihydroorotate dehydrogenase (quinone) OS=Cyanothece sp. (strain
PCC 7424) GN=pyrD PE=3 SV=1
Length = 377
Score = 167 bits (424), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 166/292 (56%), Gaps = 28/292 (9%)
Query: 47 LGILKFGDVAHYFVVNVSSP-------NTANLRKLQAKDQLKHLL-KTVVETRNQLALKP 98
G+ + G V H+ P + A L ++ A +Q +L KT+ ET ++
Sbjct: 95 FGLAELGAVTHHPQPGNPRPRLFRLPLDKAGLNRMGANNQGATILAKTLQETWDRH---- 150
Query: 99 LPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKD 158
P + I +L + + + D V+ D A YFVVNVSSPNT LR LQA
Sbjct: 151 --PRTIPIGINLCKSKITPLEEAASDYVESFRALKDWADYFVVNVSSPNTPGLRDLQATA 208
Query: 159 QLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTT 218
QL+ +L + N L P+L+KI+PDL + KDI V L ++ G+I +NTT
Sbjct: 209 QLEPIL-AALHRENALNQ----PLLLKISPDLDWGDLKDI--VNLAKTYELAGIIATNTT 261
Query: 219 VDRY----EYLDARYK---EETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG 271
+ R + L A K EE GG+SG+PL+ +STE+I +Y+ T+G++PIIGVGG+F+
Sbjct: 262 ISRQGLKTQTLPATGKDIREEAGGISGKPLQQRSTEIIRFIYQQTQGQIPIIGVGGIFTL 321
Query: 272 KDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVG 323
+DA+EKI AGASL+Q+YT ++Y GP +V I L L+++G + +SQAVG
Sbjct: 322 EDAWEKITAGASLLQVYTGWIYEGPWMVRNILQGLVAKLEQQGLSHLSQAVG 373
>sp|Q3IZ94|PYRD_RHOS4 Dihydroorotate dehydrogenase (quinone) OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=pyrD PE=3 SV=1
Length = 354
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 146/231 (63%), Gaps = 9/231 (3%)
Query: 93 QLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLR 152
+LA++P + V L+L KD D D + G A + VNVSSPNT LR
Sbjct: 125 RLAMRPRGAVPV----GLNLGANKDSPDRAADFAAVLAACGPHADFATVNVSSPNTERLR 180
Query: 153 KLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGL 212
LQ + L LL+ V++ + A +P+P + +KIAPDLS + +IA+V L S + G+
Sbjct: 181 DLQGRQALTALLEGVMQVQAGFA-RPVP-VFLKIAPDLSDADLAEIAEVALASG--IAGI 236
Query: 213 IVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK 272
+ +NTT+ R + L + + ETGGLSG PL +ST +++ + +LT+G+LP+IGVGGV S +
Sbjct: 237 VATNTTLAR-DGLRSAHARETGGLSGAPLFERSTRVLARLSELTEGRLPLIGVGGVASAE 295
Query: 273 DAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVG 323
+A+ KI+AGAS VQ+YT+ VY G L RI L+ LL ++G+ SV++AVG
Sbjct: 296 EAYAKIRAGASAVQLYTAMVYQGIGLAARIARGLDALLLRDGFGSVAEAVG 346
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 53 GDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSL 112
G A + VNVSSPNT LR LQ + L LL+ V++ + A +P+ P+ +KIAPDLS
Sbjct: 161 GPHADFATVNVSSPNTERLRDLQGRQALTALLEGVMQVQAGFA-RPV-PVFLKIAPDLSD 218
Query: 113 DEKKDIADVVLDS-VKGIL 130
+ +IA+V L S + GI+
Sbjct: 219 ADLAEIAEVALASGIAGIV 237
>sp|B9KNA2|PYRD_RHOSK Dihydroorotate dehydrogenase (quinone) OS=Rhodobacter sphaeroides
(strain KD131 / KCTC 12085) GN=pyrD PE=3 SV=1
Length = 354
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 146/231 (63%), Gaps = 9/231 (3%)
Query: 93 QLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLR 152
+LA++P + V L+L KD D D + G A + VNVSSPNT LR
Sbjct: 125 RLAMRPRGAVPV----GLNLGANKDSPDRAADFAAVLAACGPHADFATVNVSSPNTERLR 180
Query: 153 KLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGL 212
LQ + L LL+ V++ + A +P+P + +KIAPDLS + +IA+V L S + G+
Sbjct: 181 DLQGRQALTALLEGVMQVQAGFA-RPVP-VFLKIAPDLSDADLAEIAEVALASG--IAGI 236
Query: 213 IVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK 272
+ +NTT+ R + L + + ETGGLSG PL +ST +++ + +LT+G+LP+IGVGGV S +
Sbjct: 237 VATNTTLAR-DGLRSAHARETGGLSGAPLFERSTRVLARLSELTEGRLPLIGVGGVASAE 295
Query: 273 DAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVG 323
+A+ KI+AGAS VQ+YT+ VY G L RI L+ LL ++G+ SV++AVG
Sbjct: 296 EAYAKIRAGASAVQLYTAMVYQGIGLAARIARGLDALLLRDGFGSVAEAVG 346
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 53 GDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSL 112
G A + VNVSSPNT LR LQ + L LL+ V++ + A +P+ P+ +KIAPDLS
Sbjct: 161 GPHADFATVNVSSPNTERLRDLQGRQALTALLEGVMQVQAGFA-RPV-PVFLKIAPDLSD 218
Query: 113 DEKKDIADVVLDS-VKGIL 130
+ +IA+V L S + GI+
Sbjct: 219 ADLAEIAEVALASGIAGIV 237
>sp|A6U5U0|PYRD_SINMW Dihydroorotate dehydrogenase (quinone) OS=Sinorhizobium medicae
(strain WSM419) GN=pyrD PE=3 SV=1
Length = 362
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 125/213 (58%), Gaps = 4/213 (1%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD AD + D V GI F VA YF N+SSPNT LR LQA++ L LL V+
Sbjct: 138 VNIGANKDSADRIADYVTGIRTFYAVARYFTANISSPNTPGLRDLQARESLATLLSAVLA 197
Query: 170 TRNQLAVKP--LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDA 227
R A K P+ +KIAPDL+ + DIA VL +DGLIVSNTT+ R D
Sbjct: 198 AREDEAGKCGRRVPVFLKIAPDLTEEGMDDIAAEVLAQG--LDGLIVSNTTLARARLRDR 255
Query: 228 RYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287
+ E GGLSG+PL KST +++ M + LPIIGVGGV S + A EKI+AGA LVQ+
Sbjct: 256 KQASEVGGLSGKPLFEKSTAVLARMRRRVGPDLPIIGVGGVSSAETAAEKIRAGADLVQL 315
Query: 288 YTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQ 320
Y+ VY GP L RI L L +E S+ +
Sbjct: 316 YSCMVYEGPSLPGRIVRGLSALCDREKLASIRE 348
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALK--PLPPI 102
++ GI F VA YF N+SSPNT LR LQA++ L LL V+ R A K P+
Sbjct: 153 YVTGIRTFYAVARYFTANISSPNTPGLRDLQARESLATLLSAVLAAREDEAGKCGRRVPV 212
Query: 103 LVKIAPDLSLDEKKDIADVVL 123
+KIAPDL+ + DIA VL
Sbjct: 213 FLKIAPDLTEEGMDDIAAEVL 233
>sp|A3PN03|PYRD_RHOS1 Dihydroorotate dehydrogenase (quinone) OS=Rhodobacter sphaeroides
(strain ATCC 17029 / ATH 2.4.9) GN=pyrD PE=3 SV=1
Length = 354
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 146/231 (63%), Gaps = 9/231 (3%)
Query: 93 QLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLR 152
+LA++P + V L+L KD D D + G A + VNVSSPNT LR
Sbjct: 125 RLAMRPRGAVPV----GLNLGANKDSPDRAADFAAVLAACGPHADFATVNVSSPNTERLR 180
Query: 153 KLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGL 212
LQ + L LL+ V++ + A +P+P + +KIAPDLS + +IA+V L S + G+
Sbjct: 181 DLQGRQALTALLEGVMQVQAGFA-RPVP-VFLKIAPDLSDADLAEIAEVALASG--IAGI 236
Query: 213 IVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK 272
+ +NTT+ R + L + + ETGGLSG PL +ST +++ + +LT+G+LP+IGVGGV S +
Sbjct: 237 VATNTTLAR-DGLRSAHARETGGLSGAPLFERSTRVLARLSELTEGRLPLIGVGGVASAE 295
Query: 273 DAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVG 323
+A+ KI+AGAS VQ+YT+ VY G L RI L+ LL ++G+ SV++AVG
Sbjct: 296 EAYAKIRAGASAVQLYTAMVYQGIGLAARIARGLDALLLRDGFGSVAEAVG 346
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 53 GDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSL 112
G A + VNVSSPNT LR LQ + L LL+ V++ + A +P+ P+ +KIAPDLS
Sbjct: 161 GPHADFATVNVSSPNTERLRDLQGRQALTALLEGVMQVQAGFA-RPV-PVFLKIAPDLSD 218
Query: 113 DEKKDIADVVLDS-VKGIL 130
+ +IA+V L S + GI+
Sbjct: 219 ADLAEIAEVALASGIAGIV 237
>sp|Q1MLT8|PYRD_RHIL3 Dihydroorotate dehydrogenase (quinone) OS=Rhizobium leguminosarum
bv. viciae (strain 3841) GN=pyrD PE=3 SV=1
Length = 362
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 126/213 (59%), Gaps = 4/213 (1%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD D + D V GI +F VA YF N+SSPNT LR LQ ++ L LL V+
Sbjct: 138 VNIGANKDSEDRIADYVAGIRRFYSVARYFTANISSPNTPGLRDLQGRESLAVLLSAVLA 197
Query: 170 TRNQLAVKPLP--PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDA 227
R+++ P+ +KIAPDL+ + DIA L +DGLIVSNTT+ R D
Sbjct: 198 ARDEMGAASGRKIPVFLKIAPDLTEEGMDDIAAEALSHA--LDGLIVSNTTLSRDGLKDQ 255
Query: 228 RYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287
R +ETGGLSG PL KST +++ M K LPIIGVGGV S + A EKI+AGA LVQ+
Sbjct: 256 RQAKETGGLSGVPLFEKSTAVLARMRKRVGPDLPIIGVGGVSSAETALEKIRAGADLVQL 315
Query: 288 YTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQ 320
Y+ VY GP L + L +LL +E S+ +
Sbjct: 316 YSCMVYEGPGLAGDVVRGLSKLLDREKAASIRE 348
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLP--PI 102
++ GI +F VA YF N+SSPNT LR LQ ++ L LL V+ R+++ P+
Sbjct: 153 YVAGIRRFYSVARYFTANISSPNTPGLRDLQGRESLAVLLSAVLAARDEMGAASGRKIPV 212
Query: 103 LVKIAPDLSLDEKKDIA 119
+KIAPDL+ + DIA
Sbjct: 213 FLKIAPDLTEEGMDDIA 229
>sp|Q113R9|PYRD_TRIEI Dihydroorotate dehydrogenase (quinone) OS=Trichodesmium erythraeum
(strain IMS101) GN=pyrD PE=3 SV=1
Length = 378
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 139/213 (65%), Gaps = 19/213 (8%)
Query: 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPI 182
L+S + + GD YFVVNVSSPNT LR LQ D L +L+ V+ N+ PI
Sbjct: 177 LESFRLLKNCGD---YFVVNVSSPNTPGLRSLQNTDSLSKILE-VLPRENERK----KPI 228
Query: 183 LVKIAPDLSLDEKKDIADVV-LDSKCKVDGLIVSNTTVDR----YEYLDARYK---EETG 234
LVKIAPDL E + IA ++ L + K+ G+I +NTT++R + L A K EE G
Sbjct: 229 LVKIAPDL---ENEAIAAIIDLIKEYKISGIIATNTTINREKLTTKILPATGKPIIEEAG 285
Query: 235 GLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH 294
G+SG+PL +STE+I +++ TKGKLPIIGVGG+F+ +DA+ KI AGASL+QIYT VY
Sbjct: 286 GISGKPLTKRSTEIIKFIWQETKGKLPIIGVGGIFTSEDAWNKITAGASLIQIYTGLVYQ 345
Query: 295 GPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
GP +V +I L + L + G NS+S+AVG A+K
Sbjct: 346 GPGIVKQILQGLLKKLDEHGLNSISEAVGLANK 378
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 62/126 (49%), Gaps = 18/126 (14%)
Query: 54 DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLD 113
+ YFVVNVSSPNT LR LQ D L +L+ V+ N+ PILVKIAPDL
Sbjct: 185 NCGDYFVVNVSSPNTPGLRSLQNTDSLSKILE-VLPRENERK----KPILVKIAPDL--- 236
Query: 114 EKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQ 173
E + IA ++D +K Y + + + NT R+ L K ++E
Sbjct: 237 ENEAIA-AIIDLIK---------EYKISGIIATNTTINREKLTTKILPATGKPIIEEAGG 286
Query: 174 LAVKPL 179
++ KPL
Sbjct: 287 ISGKPL 292
>sp|Q6NBN1|PYRD_RHOPA Dihydroorotate dehydrogenase (quinone) OS=Rhodopseudomonas
palustris (strain ATCC BAA-98 / CGA009) GN=pyrD PE=3
SV=1
Length = 364
Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 132/217 (60%), Gaps = 4/217 (1%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD D V D VK I F +A YF VNVSSPNT LR LQ L LL V++
Sbjct: 138 VNVGANKDSDDRVADYVKLIETFAPLASYFTVNVSSPNTPGLRNLQQAAALDDLLARVID 197
Query: 170 TRNQL-AVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDAR 228
R ++ A P+L+KIAPDLSL E D+ + +VDG+IV+NTT+ R L R
Sbjct: 198 ARERVRAAAGDTPVLLKIAPDLSLGELDDVVHIA--RSRRVDGMIVANTTLSRSPTLRER 255
Query: 229 YK-EETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287
K E GGLSG PL ST +++E + +G P+IGVGG+ SG A KI+AGA+LVQ+
Sbjct: 256 TKMNEQGGLSGRPLFRLSTRMVAETFVRAEGAFPLIGVGGIDSGGAALTKIRAGATLVQL 315
Query: 288 YTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGA 324
Y++ VY G LV IK++L L + +S+++ VGA
Sbjct: 316 YSALVYKGLGLVESIKADLASTLLRTDRDSLAEIVGA 352
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 49 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL-ALKPLPPILVKIA 107
I F +A YF VNVSSPNT LR LQ L LL V++ R ++ A P+L+KIA
Sbjct: 157 IETFAPLASYFTVNVSSPNTPGLRNLQQAAALDDLLARVIDARERVRAAAGDTPVLLKIA 216
Query: 108 PDLSLDEKKDIADV 121
PDLSL E D+ +
Sbjct: 217 PDLSLGELDDVVHI 230
>sp|Q6V3W9|PYRD_LACK1 Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Lachancea
kluyveri (strain ATCC 58438 / CBS 3082 / CCRC 21498 /
NBRC 1685 / JCM 7257 / NCYC 543 / NRRL Y-12651) GN=URA9
PE=1 SV=1
Length = 446
Score = 164 bits (416), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 131/212 (61%), Gaps = 14/212 (6%)
Query: 115 KKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL 174
K D V D +KG+ KF A V+NVSSPNT LR LQ + +L LL +V+ RN L
Sbjct: 225 KNKTGDEVKDYLKGVEKFQSHADVLVINVSSPNTPGLRDLQNESKLTDLLSQIVQKRNSL 284
Query: 175 --------AVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYL- 225
A PP+LVKIAPDL+ E + IA V K KVDG+IVSNTT+ R + L
Sbjct: 285 IQNGNVLGAKTHKPPVLVKIAPDLTEPELESIA--VAAKKSKVDGIIVSNTTIQRPDSLV 342
Query: 226 --DARYKEETGGLSGEPLRNKSTELISEMYKLTK-GKLPIIGVGGVFSGKDAFEKIKAGA 282
D K +TGGLSG+PL+ + + + +YK TK +L ++G GG+ SG+DA E KAGA
Sbjct: 343 TRDEALKSQTGGLSGKPLKPFALKALKTVYKYTKDSELVLVGCGGISSGQDAIEFAKAGA 402
Query: 283 SLVQIYTSFVYHGPPLVTRIKSELEELLQKEG 314
+ VQ+YTS+ Y GP L+ IK E+ E L+KEG
Sbjct: 403 TFVQLYTSYAYKGPGLIAHIKDEVTEELKKEG 434
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL--------AL 96
+L G+ KF A V+NVSSPNT LR LQ + +L LL +V+ RN L A
Sbjct: 235 YLKGVEKFQSHADVLVINVSSPNTPGLRDLQNESKLTDLLSQIVQKRNSLIQNGNVLGAK 294
Query: 97 KPLPPILVKIAPDLSLDEKKDIA 119
PP+LVKIAPDL+ E + IA
Sbjct: 295 THKPPVLVKIAPDLTEPELESIA 317
>sp|Q6G4F7|PYRD_BARHE Dihydroorotate dehydrogenase (quinone) OS=Bartonella henselae
(strain ATCC 49882 / Houston 1) GN=pyrD PE=3 SV=1
Length = 362
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 126/211 (59%), Gaps = 4/211 (1%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD D + D + I F DVA YF VN+SSPNT LR LQ +D L L+ + +
Sbjct: 136 INIGANKDTVDKIDDYITSIAYFYDVADYFTVNISSPNTPGLRDLQVRDSLHLLMNAISQ 195
Query: 170 TRNQLAVKP--LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDA 227
RN+ K PI +KIAPDLS E D+A+ + S DGLIVSNTT+ R +
Sbjct: 196 ARNEQKKKHGFFVPIFLKIAPDLSEKELDDVAEEMKLSD--FDGLIVSNTTLSRQGLREC 253
Query: 228 RYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287
+ E GGLSG PL +ST ++++M + K+ IIGVGG+ K A EK+KAGA LVQ+
Sbjct: 254 TLRNEEGGLSGRPLFERSTIVLAKMRQKLGKKIAIIGVGGIRDAKTALEKVKAGADLVQL 313
Query: 288 YTSFVYHGPPLVTRIKSELEELLQKEGYNSV 318
Y+ VY GP L I E+ + +QK+G S+
Sbjct: 314 YSGMVYEGPDLAITILKEILQFMQKDGVESI 344
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKP--LPPI 102
++ I F DVA YF VN+SSPNT LR LQ +D L L+ + + RN+ K PI
Sbjct: 151 YITSIAYFYDVADYFTVNISSPNTPGLRDLQVRDSLHLLMNAISQARNEQKKKHGFFVPI 210
Query: 103 LVKIAPDLSLDEKKDIAD 120
+KIAPDLS E D+A+
Sbjct: 211 FLKIAPDLSEKELDDVAE 228
>sp|Q9HMK2|PYRD_HALSA Dihydroorotate dehydrogenase (quinone) OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=pyrD PE=3
SV=1
Length = 349
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 141/233 (60%), Gaps = 15/233 (6%)
Query: 93 QLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLR 152
+L +PLP + V + ++ + +AD D + GD Y VVNVSSPNT LR
Sbjct: 129 RLDAEPLPDVPVGV--NIGKSKTTPLADAPDDYTYTFSRVGDAVDYVVVNVSSPNTPGLR 186
Query: 153 KLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV-LDSKCKVDG 211
+LQ +DQL +L+ + + P+LVK++PDL D +AD V L + +DG
Sbjct: 187 ELQGRDQLAAILEALQDAGAS-------PLLVKLSPDLHQDA---VADAVELANDLGLDG 236
Query: 212 LIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG 271
++ +NTT +R E L + E GGLSG P+R ++TE + + + T P++GVGGV +
Sbjct: 237 IVATNTTTERPESLSHPHAGEQGGLSGAPIRERATEQVRFVAERTD--QPVVGVGGVATA 294
Query: 272 KDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGA 324
+DA+EKI+AGAS+VQ+YT+ VY GP + RI L LL+++G++SV AVGA
Sbjct: 295 EDAYEKIRAGASVVQLYTALVYEGPWVAKRINEGLVSLLERDGFDSVEDAVGA 347
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 51 KFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDL 110
+ GD Y VVNVSSPNT LR+LQ +DQL +L+ + + P+LVK++PDL
Sbjct: 165 RVGDAVDYVVVNVSSPNTPGLRELQGRDQLAAILEALQDAGAS-------PLLVKLSPDL 217
Query: 111 SLDEKKDIADVVLD 124
D D ++ D
Sbjct: 218 HQDAVADAVELAND 231
>sp|B0R808|PYRD_HALS3 Dihydroorotate dehydrogenase (quinone) OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=pyrD PE=3 SV=1
Length = 349
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 141/233 (60%), Gaps = 15/233 (6%)
Query: 93 QLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLR 152
+L +PLP + V + ++ + +AD D + GD Y VVNVSSPNT LR
Sbjct: 129 RLDAEPLPDVPVGV--NIGKSKTTPLADAPDDYTYTFSRVGDAVDYVVVNVSSPNTPGLR 186
Query: 153 KLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV-LDSKCKVDG 211
+LQ +DQL +L+ + + P+LVK++PDL D +AD V L + +DG
Sbjct: 187 ELQGRDQLAAILEALQDAGAS-------PLLVKLSPDLHQDA---VADAVELANDLGLDG 236
Query: 212 LIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG 271
++ +NTT +R E L + E GGLSG P+R ++TE + + + T P++GVGGV +
Sbjct: 237 IVATNTTTERPESLSHPHAGEQGGLSGAPIRERATEQVRFVAERTD--QPVVGVGGVATA 294
Query: 272 KDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGA 324
+DA+EKI+AGAS+VQ+YT+ VY GP + RI L LL+++G++SV AVGA
Sbjct: 295 EDAYEKIRAGASVVQLYTALVYEGPWVAKRINEGLVSLLERDGFDSVEDAVGA 347
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 51 KFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDL 110
+ GD Y VVNVSSPNT LR+LQ +DQL +L+ + + P+LVK++PDL
Sbjct: 165 RVGDAVDYVVVNVSSPNTPGLRELQGRDQLAAILEALQDAGAS-------PLLVKLSPDL 217
Query: 111 SLDEKKDIADVVLD 124
D D ++ D
Sbjct: 218 HQDAVADAVELAND 231
>sp|Q31RJ7|PYRD_SYNE7 Dihydroorotate dehydrogenase (quinone) OS=Synechococcus elongatus
(strain PCC 7942) GN=pyrD PE=3 SV=1
Length = 378
Score = 162 bits (410), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 140/230 (60%), Gaps = 16/230 (6%)
Query: 104 VKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHL 163
+ I +L + ++ V D V + YFVVNVSSPNT LR LQA +L+ +
Sbjct: 153 IPIGINLGKSKLTPLSGAVSDYVSSFRSLRSLGDYFVVNVSSPNTPGLRSLQAVTELEPI 212
Query: 164 LKTV-VETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDR- 221
L + E Q P+L+KIAPDL +E IA L + ++ G+I +NTT+D+
Sbjct: 213 LAALQAENTEQR------PLLLKIAPDLVDEEVVAIAH--LAQRQQLAGIIATNTTIDKS 264
Query: 222 ---YEYLDARYK---EETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAF 275
E+L R + E GG+SG PLR++STE+I +++ T+G+LPIIGVGG+FS +DA+
Sbjct: 265 LLSVEHLPGRREPLATEAGGISGAPLRSRSTEVIRLLHRTTQGQLPIIGVGGIFSAEDAW 324
Query: 276 EKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAA 325
+KI AGASLVQ+YT +VY GP LV I+ L E L G +++ AVG+A
Sbjct: 325 QKIVAGASLVQVYTGWVYEGPLLVKTIQQGLLERLDSAGLPNLAAAVGSA 374
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 55 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTV-VETRNQLALKPLPPILVKIAPDLSLD 113
+ YFVVNVSSPNT LR LQA +L+ +L + E Q P+L+KIAPDL +
Sbjct: 184 LGDYFVVNVSSPNTPGLRSLQAVTELEPILAALQAENTEQR------PLLLKIAPDLVDE 237
Query: 114 EKKDIA 119
E IA
Sbjct: 238 EVVAIA 243
>sp|Q8G2K8|PYRD_BRUSU Dihydroorotate dehydrogenase (quinone) OS=Brucella suis biovar 1
(strain 1330) GN=pyrD PE=3 SV=1
Length = 364
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 131/215 (60%), Gaps = 8/215 (3%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD D + D V GI +F +A YF VN+SSPNT LR LQA++ L LL V+E
Sbjct: 138 VNIGANKDAEDRIADYVAGIRRFYQLARYFTVNISSPNTPGLRNLQAREALHELLSRVLE 197
Query: 170 TR----NQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYL 225
R N +K P+ +KIAPDL+ +E DIA D++ K+DG+IVSNTT+ R
Sbjct: 198 ARDEEGNMCTLKR--PVFLKIAPDLTDEELDDIA-AEADAQ-KLDGIIVSNTTLSRSGLK 253
Query: 226 DARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLV 285
+ ETGGLSG PL +ST +++ M + +P+IGVGG+ S + A KIKAGA LV
Sbjct: 254 NPENSNETGGLSGAPLFERSTVVLARMRERVGPDMPLIGVGGIDSAETALAKIKAGADLV 313
Query: 286 QIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQ 320
Q+YT +Y GP L I L ++ EG +S+++
Sbjct: 314 QLYTGLIYRGPGLPGEILRGLSTAIKHEGVSSIAE 348
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 50/79 (63%), Gaps = 6/79 (7%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETR----NQLALKPLP 100
++ GI +F +A YF VN+SSPNT LR LQA++ L LL V+E R N LK
Sbjct: 153 YVAGIRRFYQLARYFTVNISSPNTPGLRNLQAREALHELLSRVLEARDEEGNMCTLK--R 210
Query: 101 PILVKIAPDLSLDEKKDIA 119
P+ +KIAPDL+ +E DIA
Sbjct: 211 PVFLKIAPDLTDEELDDIA 229
>sp|B0CJU0|PYRD_BRUSI Dihydroorotate dehydrogenase (quinone) OS=Brucella suis (strain
ATCC 23445 / NCTC 10510) GN=pyrD PE=3 SV=1
Length = 364
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 131/215 (60%), Gaps = 8/215 (3%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD D + D V GI +F +A YF VN+SSPNT LR LQA++ L LL V+E
Sbjct: 138 VNIGANKDAEDRIADYVAGIRRFYQLARYFTVNISSPNTPGLRNLQAREALHELLSRVLE 197
Query: 170 TR----NQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYL 225
R N +K P+ +KIAPDL+ +E DIA D++ K+DG+IVSNTT+ R
Sbjct: 198 ARDEEGNMCTLKR--PVFLKIAPDLTDEELDDIA-AEADAQ-KLDGIIVSNTTLSRSGLK 253
Query: 226 DARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLV 285
+ ETGGLSG PL +ST +++ M + +P+IGVGG+ S + A KIKAGA LV
Sbjct: 254 NPENSNETGGLSGAPLFERSTVVLARMRERVGPDMPLIGVGGIDSAETALAKIKAGADLV 313
Query: 286 QIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQ 320
Q+YT +Y GP L I L ++ EG +S+++
Sbjct: 314 QLYTGLIYRGPGLPGEILRGLSTAIKHEGVSSIAE 348
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 50/79 (63%), Gaps = 6/79 (7%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETR----NQLALKPLP 100
++ GI +F +A YF VN+SSPNT LR LQA++ L LL V+E R N LK
Sbjct: 153 YVAGIRRFYQLARYFTVNISSPNTPGLRNLQAREALHELLSRVLEARDEEGNMCTLK--R 210
Query: 101 PILVKIAPDLSLDEKKDIA 119
P+ +KIAPDL+ +E DIA
Sbjct: 211 PVFLKIAPDLTDEELDDIA 229
>sp|A5VNQ1|PYRD_BRUO2 Dihydroorotate dehydrogenase (quinone) OS=Brucella ovis (strain
ATCC 25840 / 63/290 / NCTC 10512) GN=pyrD PE=3 SV=1
Length = 364
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 131/215 (60%), Gaps = 8/215 (3%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD D + D V GI +F +A YF VN+SSPNT LR LQA++ L LL V+E
Sbjct: 138 VNIGANKDAEDRIADYVAGIRRFYQLARYFTVNISSPNTPGLRNLQAREALHELLSRVLE 197
Query: 170 TR----NQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYL 225
R N +K P+ +KIAPDL+ +E DIA D++ K+DG+IVSNTT+ R
Sbjct: 198 ARDEEGNMCTLKR--PVFLKIAPDLTDEELDDIA-AEADAQ-KLDGIIVSNTTLSRSGLK 253
Query: 226 DARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLV 285
+ ETGGLSG PL +ST +++ M + +P+IGVGG+ S + A KIKAGA LV
Sbjct: 254 NPENSNETGGLSGAPLFERSTVVLARMRERVGPDMPLIGVGGIDSAETALAKIKAGADLV 313
Query: 286 QIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQ 320
Q+YT +Y GP L I L ++ EG +S+++
Sbjct: 314 QLYTGLIYRGPGLPGEILRGLSTAIKHEGVSSIAE 348
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 50/79 (63%), Gaps = 6/79 (7%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETR----NQLALKPLP 100
++ GI +F +A YF VN+SSPNT LR LQA++ L LL V+E R N LK
Sbjct: 153 YVAGIRRFYQLARYFTVNISSPNTPGLRNLQAREALHELLSRVLEARDEEGNMCTLK--R 210
Query: 101 PILVKIAPDLSLDEKKDIA 119
P+ +KIAPDL+ +E DIA
Sbjct: 211 PVFLKIAPDLTDEELDDIA 229
>sp|A9M7Z9|PYRD_BRUC2 Dihydroorotate dehydrogenase (quinone) OS=Brucella canis (strain
ATCC 23365 / NCTC 10854) GN=pyrD PE=3 SV=1
Length = 364
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 131/215 (60%), Gaps = 8/215 (3%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD D + D V GI +F +A YF VN+SSPNT LR LQA++ L LL V+E
Sbjct: 138 VNIGANKDAEDRIADYVAGIRRFYQLARYFTVNISSPNTPGLRNLQAREALHELLSRVLE 197
Query: 170 TR----NQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYL 225
R N +K P+ +KIAPDL+ +E DIA D++ K+DG+IVSNTT+ R
Sbjct: 198 ARDEEGNMCTLKR--PVFLKIAPDLTDEELDDIA-AEADAQ-KLDGIIVSNTTLSRSGLK 253
Query: 226 DARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLV 285
+ ETGGLSG PL +ST +++ M + +P+IGVGG+ S + A KIKAGA LV
Sbjct: 254 NPENSNETGGLSGAPLFERSTVVLARMRERVGPDMPLIGVGGIDSAETALAKIKAGADLV 313
Query: 286 QIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQ 320
Q+YT +Y GP L I L ++ EG +S+++
Sbjct: 314 QLYTGLIYRGPGLPGEILRGLSTAIKHEGVSSIAE 348
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 50/79 (63%), Gaps = 6/79 (7%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETR----NQLALKPLP 100
++ GI +F +A YF VN+SSPNT LR LQA++ L LL V+E R N LK
Sbjct: 153 YVAGIRRFYQLARYFTVNISSPNTPGLRNLQAREALHELLSRVLEARDEEGNMCTLK--R 210
Query: 101 PILVKIAPDLSLDEKKDIA 119
P+ +KIAPDL+ +E DIA
Sbjct: 211 PVFLKIAPDLTDEELDDIA 229
>sp|A9CK85|PYRD_AGRT5 Dihydroorotate dehydrogenase (quinone) OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=pyrD PE=3 SV=1
Length = 363
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 129/211 (61%), Gaps = 4/211 (1%)
Query: 110 LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE 169
+++ KD D + D V+GI F VA YF VN+SSPNT LR LQA++ L LL V+E
Sbjct: 138 VNIGANKDSEDRIADYVQGIEAFYAVASYFTVNISSPNTPGLRDLQARESLAALLTAVLE 197
Query: 170 TRNQLAVK--PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDA 227
R A + PI +KIAPDL+ + D+A+ L +DGLIVSNTT+ R
Sbjct: 198 RRKTEAERLGKRIPIFLKIAPDLTEEGLDDVAEEAL--AHDLDGLIVSNTTLSREGLRPG 255
Query: 228 RYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287
++ E GGLSG+PL ST ++++M + LPIIGVGGV S + A EK++AGA LVQ+
Sbjct: 256 PHRGEAGGLSGKPLFELSTTVLAKMRRRVGANLPIIGVGGVSSAETALEKVRAGADLVQL 315
Query: 288 YTSFVYHGPPLVTRIKSELEELLQKEGYNSV 318
Y+ VY GP L + I + +L+ +EG ++
Sbjct: 316 YSCMVYEGPGLPSAIVKGMSKLVAREGVETI 346
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA--LKPLPPI 102
++ GI F VA YF VN+SSPNT LR LQA++ L LL V+E R A L PI
Sbjct: 153 YVQGIEAFYAVASYFTVNISSPNTPGLRDLQARESLAALLTAVLERRKTEAERLGKRIPI 212
Query: 103 LVKIAPDLSLDEKKDIADVVL 123
+KIAPDL+ + D+A+ L
Sbjct: 213 FLKIAPDLTEEGLDDVAEEAL 233
>sp|Q5N2Q8|PYRD_SYNP6 Dihydroorotate dehydrogenase (quinone) OS=Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pyrD PE=3 SV=1
Length = 378
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 140/230 (60%), Gaps = 16/230 (6%)
Query: 104 VKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHL 163
+ I +L + ++ V D V + YFVVNVSSPNT LR LQA +L+ +
Sbjct: 153 IPIGINLGKSKLTPLSGAVSDYVSSFRSLRSLGDYFVVNVSSPNTPGLRSLQAVTELEPI 212
Query: 164 LKTV-VETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDR- 221
L + E Q P+L+KIAPDL +E IA L + ++ G+I +NTT+D+
Sbjct: 213 LAALQAENTEQR------PLLLKIAPDLVDEEVVAIAH--LAQRQQLAGIIATNTTIDKS 264
Query: 222 ---YEYLDARYK---EETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAF 275
E+L R + E GG+SG PLR++STE+I +++ T+G+LPIIGVGG+FS +DA+
Sbjct: 265 LLSVEHLPGRREPLATEAGGISGAPLRSRSTEVIRLLHRTTQGQLPIIGVGGIFSAEDAW 324
Query: 276 EKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAA 325
+KI AGASLVQ+YT +VY GP LV I+ L E L G +++ AVG+A
Sbjct: 325 QKIVAGASLVQVYTGWVYEGPLLVKTIQQGLLERLDSAGLPNLAAAVGSA 374
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 55 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTV-VETRNQLALKPLPPILVKIAPDLSLD 113
+ YFVVNVSSPNT LR LQA +L+ +L + E Q P+L+KIAPDL +
Sbjct: 184 LGDYFVVNVSSPNTPGLRSLQAVTELEPILAALQAENTEQR------PLLLKIAPDLVDE 237
Query: 114 EKKDIA 119
E IA
Sbjct: 238 EVVAIA 243
>sp|Q1D7Y6|PYRD_MYXXD Dihydroorotate dehydrogenase (quinone) OS=Myxococcus xanthus
(strain DK 1622) GN=pyrD PE=3 SV=1
Length = 363
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 133/222 (59%), Gaps = 12/222 (5%)
Query: 110 LSLDEKKD--IADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTV 167
+++ + KD + V D V + + Y VVN SSPNT LRKLQ +QL LL V
Sbjct: 144 VNIGKNKDTPLEQAVDDYVACVDALAPLGDYVVVNASSPNTPGLRKLQEPEQLGQLLGAV 203
Query: 168 VETRNQLA-VKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDR-YEYL 225
E +LA V P P+ +KIAPDLS + ++ DV K+ GLI +NTTV R +E+
Sbjct: 204 QE---RLATVAPGKPLFLKIAPDLSPEAVDEVVDVA--RAQKLAGLIATNTTVARPFEHP 258
Query: 226 DARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLV 285
A+ E GGLSG P+R + +I + + G LPIIGVGGVF+ +D +EK++AGAS+V
Sbjct: 259 LAK---EAGGLSGAPVREPANAVIRRAWLRSGGALPIIGVGGVFTAQDVYEKLRAGASVV 315
Query: 286 QIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
Q+YT F+Y GP +V I L LL ++GY V +GA H+
Sbjct: 316 QVYTGFIYEGPGMVGNILPTLATLLARDGYKQVRDVIGAEHR 357
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 58 YFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKD 117
Y VVN SSPNT LRKLQ +QL LL V E +A P P+ +KIAPDLS + +
Sbjct: 174 YVVVNASSPNTPGLRKLQEPEQLGQLLGAVQERLATVA--PGKPLFLKIAPDLSPEAVDE 231
Query: 118 IADVV 122
+ DV
Sbjct: 232 VVDVA 236
>sp|Q9RX14|PYRD_DEIRA Dihydroorotate dehydrogenase (quinone) OS=Deinococcus radiodurans
(strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 /
NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=pyrD PE=3
SV=1
Length = 369
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 135/206 (65%), Gaps = 5/206 (2%)
Query: 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPL 179
D D K + GD+A FVVNVSSPNT LR LQA D L L++ V++ V+ L
Sbjct: 165 DAAEDYRKCVRALGDLADAFVVNVSSPNTPGLRALQAADDLAALVRAVLDEVEAGRVRTL 224
Query: 180 --PPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLS 237
PP+LVK+APDL + + VLD+ GLI+SNTT+ R L +E+ GGLS
Sbjct: 225 RRPPVLVKLAPDLHPADFEASVGAVLDAGAS--GLIISNTTLSRGG-LSHPNREQAGGLS 281
Query: 238 GEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPP 297
G PL ++STEL+ + Y+LT+G++PI+GVGGVFS +DA+ K+ AGA LV++Y++ +Y GP
Sbjct: 282 GRPLTDRSTELVRDAYRLTRGQVPIVGVGGVFSAEDAYAKLLAGADLVEVYSALIYRGPG 341
Query: 298 LVTRIKSELEELLQKEGYNSVSQAVG 323
LV I + L +LL+++G +++ VG
Sbjct: 342 LVREINAGLVKLLERDGVRNIADVVG 367
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 49 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPL--PPILVKI 106
+ GD+A FVVNVSSPNT LR LQA D L L++ V++ ++ L PP+LVK+
Sbjct: 174 VRALGDLADAFVVNVSSPNTPGLRALQAADDLAALVRAVLDEVEAGRVRTLRRPPVLVKL 233
Query: 107 APDLSLDEKKDIADVVLDS 125
APDL + + VLD+
Sbjct: 234 APDLHPADFEASVGAVLDA 252
>sp|Q874I4|PYRD_CANAL Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=URA9 PE=1
SV=1
Length = 444
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 137/221 (61%), Gaps = 11/221 (4%)
Query: 115 KKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL 174
K D V D VKG+ + G A V+NVSSPNT LR LQ++ +L +LL TVV+ RN L
Sbjct: 227 KNKFGDEVNDYVKGVERLGPYADVLVINVSSPNTPGLRDLQSEAKLTNLLTTVVKERNVL 286
Query: 175 AVKPL---PPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTT----VDRYEYLDA 227
L PP+LVK+APDL+ E + IA+ + KVDG+I+SNTT VDR D
Sbjct: 287 GKNLLGNKPPVLVKVAPDLTEPEIESIANSA--KEAKVDGIIISNTTIQRPVDRLLTTDK 344
Query: 228 RYKEETGGLSGEPLRNKSTELISEMYKLTK-GKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286
+ + GGLSG+PL+ S + + + K TK L +IG GG+ +GKDA E KAGA+ ++
Sbjct: 345 QLINQAGGLSGKPLKPLSLKALRTLRKYTKDSDLVLIGCGGISNGKDALEFGKAGATFIE 404
Query: 287 IYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
+YT+F Y GP LV +I+ EL E L+KEG + Q +G+ K
Sbjct: 405 LYTAFAYKGPGLVGKIRDELAEELRKEG-KTWEQIIGSDDK 444
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 21/145 (14%)
Query: 45 WLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA---LKPLPP 101
++ G+ + G A V+NVSSPNT LR LQ++ +L +LL TVV+ RN L L PP
Sbjct: 237 YVKGVERLGPYADVLVINVSSPNTPGLRDLQSEAKLTNLLTTVVKERNVLGKNLLGNKPP 296
Query: 102 ILVKIAPDLSLDEKKDIADVVLDS-VKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQL 160
+LVK+APDL+ E + IA+ ++ V GI+ +N + D+L
Sbjct: 297 VLVKVAPDLTEPEIESIANSAKEAKVDGII-----------------ISNTTIQRPVDRL 339
Query: 161 KHLLKTVVETRNQLAVKPLPPILVK 185
K ++ L+ KPL P+ +K
Sbjct: 340 LTTDKQLINQAGGLSGKPLKPLSLK 364
>sp|B5EL46|PYRD_ACIF5 Dihydroorotate dehydrogenase (quinone) OS=Acidithiobacillus
ferrooxidans (strain ATCC 53993) GN=pyrD PE=3 SV=1
Length = 363
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 124/199 (62%), Gaps = 8/199 (4%)
Query: 129 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAV---KPLPPILVK 185
+ +GD Y +NVSSPNT LR LQ ++ L+ LLK V +LA+ +P P+L+K
Sbjct: 168 LFHYGD---YLCINVSSPNTPGLRLLQGEEALRGLLKAVAAANQRLALQHQRPPLPLLLK 224
Query: 186 IAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKS 245
IAPDL D+ I + L + V+G I +NTT++R E+GGLSG PL +S
Sbjct: 225 IAPDLDNDDLNAIGSLALGTAPLVNGFIATNTTIERPASQPG--LSESGGLSGAPLLQQS 282
Query: 246 TELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305
+I+++Y+ T+G++PIIGVGG+ S DA+ KI AGASLVQ+Y+ ++ GP LV I E
Sbjct: 283 NAVIAQLYRATQGQVPIIGVGGILSAADAYAKILAGASLVQVYSGLIFRGPGLVREILEE 342
Query: 306 LEELLQKEGYNSVSQAVGA 324
L L K+GY ++ A G+
Sbjct: 343 LPGLWLKDGYPDLAHARGS 361
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 49 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAL---KPLPPILVK 105
+ +GD Y +NVSSPNT LR LQ ++ L+ LLK V +LAL +P P+L+K
Sbjct: 168 LFHYGD---YLCINVSSPNTPGLRLLQGEEALRGLLKAVAAANQRLALQHQRPPLPLLLK 224
Query: 106 IAPDLSLDEKKDIADVVLDSVKGILKF 132
IAPDL D+ I + L + + F
Sbjct: 225 IAPDLDNDDLNAIGSLALGTAPLVNGF 251
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,078,256
Number of Sequences: 539616
Number of extensions: 4839442
Number of successful extensions: 17798
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 15604
Number of HSP's gapped (non-prelim): 1015
length of query: 328
length of database: 191,569,459
effective HSP length: 118
effective length of query: 210
effective length of database: 127,894,771
effective search space: 26857901910
effective search space used: 26857901910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)