Query psy5880
Match_columns 328
No_of_seqs 310 out of 2466
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 20:26:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0167 PyrD Dihydroorotate de 100.0 5.1E-44 1.1E-48 327.5 22.3 245 57-328 57-310 (310)
2 PLN02826 dihydroorotate dehydr 100.0 1.4E-41 3.1E-46 324.9 24.4 219 107-327 188-409 (409)
3 KOG1436|consensus 100.0 6.9E-40 1.5E-44 292.2 22.6 259 56-326 137-398 (398)
4 PLN02495 oxidoreductase, actin 100.0 1.2E-39 2.6E-44 308.7 18.6 238 67-327 82-338 (385)
5 PRK02506 dihydroorotate dehydr 100.0 1.2E-38 2.7E-43 296.9 17.6 244 57-325 57-307 (310)
6 PRK07259 dihydroorotate dehydr 100.0 1.8E-37 4E-42 288.9 17.7 234 61-327 61-301 (301)
7 cd04739 DHOD_like Dihydroorota 100.0 5.2E-36 1.1E-40 281.2 20.2 232 63-325 71-303 (325)
8 PRK05286 dihydroorotate dehydr 100.0 4.6E-36 9.9E-41 283.7 19.9 192 119-314 153-344 (344)
9 cd04740 DHOD_1B_like Dihydroor 100.0 1.7E-35 3.6E-40 275.2 22.8 236 57-325 55-296 (296)
10 TIGR01037 pyrD_sub1_fam dihydr 100.0 2.4E-35 5.3E-40 274.6 22.0 233 64-326 63-300 (300)
11 TIGR01036 pyrD_sub2 dihydrooro 100.0 2.4E-35 5.1E-40 277.2 18.0 186 119-306 150-335 (335)
12 cd04741 DHOD_1A_like Dihydroor 100.0 1.7E-35 3.7E-40 274.2 16.8 228 57-310 54-294 (294)
13 PRK08318 dihydropyrimidine deh 100.0 2.3E-34 5.1E-39 279.5 21.5 195 119-326 112-320 (420)
14 PF01180 DHO_dh: Dihydroorotat 100.0 9.5E-35 2.1E-39 269.9 16.4 183 119-310 108-295 (295)
15 PRK07565 dihydroorotate dehydr 100.0 1.4E-33 3E-38 266.2 23.0 231 65-326 75-306 (334)
16 cd04738 DHOD_2_like Dihydrooro 100.0 4.2E-33 9.1E-38 262.0 19.3 222 66-306 104-327 (327)
17 cd02940 DHPD_FMN Dihydropyrimi 100.0 2.1E-32 4.6E-37 254.4 14.3 173 123-306 113-299 (299)
18 cd02810 DHOD_DHPD_FMN Dihydroo 100.0 6.9E-30 1.5E-34 236.7 15.2 216 63-304 69-288 (289)
19 cd02803 OYE_like_FMN_family Ol 99.9 1.5E-25 3.3E-30 211.1 21.1 252 30-304 24-326 (327)
20 COG1902 NemA NADH:flavin oxido 99.9 1E-25 2.2E-30 212.8 19.8 257 26-308 26-337 (363)
21 PRK13523 NADPH dehydrogenase N 99.9 1.9E-25 4E-30 210.3 20.2 246 33-308 31-324 (337)
22 cd04735 OYE_like_4_FMN Old yel 99.9 4.1E-25 9E-30 209.9 20.5 258 27-307 23-331 (353)
23 cd04733 OYE_like_2_FMN Old yel 99.9 1E-24 2.2E-29 206.3 20.7 256 27-304 23-337 (338)
24 cd04734 OYE_like_3_FMN Old yel 99.9 3.1E-24 6.8E-29 203.0 20.9 254 33-306 27-332 (343)
25 cd02932 OYE_YqiM_FMN Old yello 99.9 5.2E-24 1.1E-28 201.4 20.6 245 33-304 27-335 (336)
26 cd02933 OYE_like_FMN Old yello 99.9 8.3E-24 1.8E-28 199.5 21.0 240 32-305 28-330 (338)
27 TIGR00736 nifR3_rel_arch TIM-b 99.9 1.7E-24 3.6E-29 192.3 14.5 147 121-298 78-230 (231)
28 cd04747 OYE_like_5_FMN Old yel 99.9 1.3E-23 2.7E-28 199.1 20.4 245 33-308 27-347 (361)
29 cd02931 ER_like_FMN Enoate red 99.9 1.7E-23 3.7E-28 200.6 20.7 255 30-307 26-353 (382)
30 TIGR00742 yjbN tRNA dihydrouri 99.9 1.4E-23 2.9E-28 196.0 18.2 161 121-305 65-239 (318)
31 PRK10550 tRNA-dihydrouridine s 99.9 1.3E-23 2.8E-28 195.8 17.3 157 121-303 73-238 (312)
32 PF00724 Oxidored_FMN: NADH:fl 99.9 5.1E-24 1.1E-28 201.6 12.8 259 27-306 23-338 (341)
33 cd02930 DCR_FMN 2,4-dienoyl-Co 99.9 9.9E-23 2.2E-27 193.7 21.0 249 35-307 29-324 (353)
34 PRK10415 tRNA-dihydrouridine s 99.9 4.8E-23 1E-27 193.1 16.7 155 121-304 75-239 (321)
35 PRK08255 salicylyl-CoA 5-hydro 99.9 1.4E-22 3E-27 210.3 21.8 247 32-305 424-733 (765)
36 KOG1799|consensus 99.9 1.1E-23 2.4E-28 190.5 10.4 193 120-326 218-423 (471)
37 TIGR00737 nifR3_yhdG putative 99.9 1.2E-22 2.5E-27 190.8 16.6 154 122-304 74-237 (319)
38 COG0042 tRNA-dihydrouridine sy 99.9 1.1E-22 2.3E-27 190.4 15.8 153 122-302 78-241 (323)
39 PLN02411 12-oxophytodienoate r 99.9 5.2E-22 1.1E-26 190.5 20.5 249 33-306 38-359 (391)
40 cd02911 arch_FMN Archeal FMN-b 99.9 2.1E-22 4.6E-27 180.4 15.7 144 121-303 83-232 (233)
41 KOG2335|consensus 99.9 3.2E-22 6.9E-27 183.7 16.0 164 99-299 73-243 (358)
42 PRK10605 N-ethylmaleimide redu 99.9 1.3E-21 2.9E-26 186.0 20.8 237 34-305 32-337 (362)
43 cd02929 TMADH_HD_FMN Trimethyl 99.9 8.9E-22 1.9E-26 188.0 19.7 240 41-306 40-336 (370)
44 PRK11815 tRNA-dihydrouridine s 99.9 7.6E-22 1.6E-26 185.9 16.1 160 121-304 75-248 (333)
45 PF01207 Dus: Dihydrouridine s 99.9 3.5E-22 7.6E-27 186.4 11.7 152 121-301 64-225 (309)
46 cd02801 DUS_like_FMN Dihydrour 99.9 6.1E-21 1.3E-25 171.0 15.8 156 121-305 65-229 (231)
47 TIGR02151 IPP_isom_2 isopenten 99.8 3.8E-19 8.2E-24 167.6 18.1 186 122-325 130-328 (333)
48 cd02811 IDI-2_FMN Isopentenyl- 99.8 4.8E-19 1E-23 166.5 18.2 186 121-322 128-325 (326)
49 cd02809 alpha_hydroxyacid_oxid 99.8 8.4E-19 1.8E-23 163.2 18.5 162 120-322 129-298 (299)
50 PRK05437 isopentenyl pyrophosp 99.8 1E-18 2.2E-23 165.6 18.8 187 122-325 137-335 (352)
51 KOG1436|consensus 99.7 1.5E-16 3.3E-21 143.0 12.4 106 22-142 181-286 (398)
52 cd02922 FCB2_FMN Flavocytochro 99.7 1.2E-15 2.7E-20 143.7 18.7 171 119-322 130-342 (344)
53 cd04737 LOX_like_FMN L-Lactate 99.7 3.6E-15 7.9E-20 140.6 18.8 170 119-324 137-349 (351)
54 PLN02826 dihydroorotate dehydr 99.6 8.4E-15 1.8E-19 140.8 17.9 170 20-216 187-371 (409)
55 PLN02535 glycolate oxidase 99.6 4.8E-14 1E-18 133.2 18.2 172 119-325 136-352 (364)
56 TIGR02708 L_lactate_ox L-lacta 99.6 1.6E-13 3.4E-18 129.8 18.8 170 120-324 146-356 (367)
57 COG0167 PyrD Dihydroorotate de 99.6 2E-13 4.2E-18 126.0 17.1 103 15-141 88-192 (310)
58 PF01070 FMN_dh: FMN-dependent 99.5 7.2E-13 1.6E-17 125.8 15.9 131 163-325 216-354 (356)
59 cd02808 GltS_FMN Glutamate syn 99.5 1.1E-12 2.5E-17 126.2 17.1 153 154-324 195-387 (392)
60 PLN02979 glycolate oxidase 99.5 2.7E-12 5.8E-17 120.4 17.7 170 119-323 133-350 (366)
61 PLN02493 probable peroxisomal 99.4 5.2E-12 1.1E-16 119.4 18.0 121 178-323 223-351 (367)
62 KOG2333|consensus 99.4 1.6E-12 3.4E-17 123.2 14.3 144 136-305 347-501 (614)
63 PRK05458 guanosine 5'-monophos 99.4 1.7E-11 3.7E-16 114.4 19.2 153 136-323 112-310 (326)
64 cd03332 LMO_FMN L-Lactate 2-mo 99.4 6.2E-12 1.3E-16 119.8 15.2 130 162-323 243-380 (383)
65 PRK11197 lldD L-lactate dehydr 99.4 7.8E-12 1.7E-16 118.9 15.1 129 164-324 237-373 (381)
66 cd04736 MDH_FMN Mandelate dehy 99.3 2.1E-11 4.5E-16 115.2 15.2 129 160-322 224-360 (361)
67 TIGR01036 pyrD_sub2 dihydrooro 99.3 5.9E-11 1.3E-15 112.0 16.3 109 20-141 135-243 (335)
68 KOG0538|consensus 99.3 5.8E-11 1.3E-15 107.0 11.8 121 178-323 222-350 (363)
69 PRK13125 trpA tryptophan synth 99.2 6.6E-10 1.4E-14 100.6 17.4 158 120-293 18-219 (244)
70 TIGR01306 GMP_reduct_2 guanosi 99.2 1.1E-09 2.3E-14 102.0 19.1 154 136-323 109-307 (321)
71 PRK00507 deoxyribose-phosphate 99.2 2.6E-10 5.7E-15 101.2 13.1 119 135-290 87-210 (221)
72 PRK08649 inosine 5-monophospha 99.2 7.9E-10 1.7E-14 105.2 16.2 173 121-325 142-364 (368)
73 PRK04180 pyridoxal biosynthesi 99.2 5E-11 1.1E-15 107.8 7.5 148 123-292 27-238 (293)
74 cd04722 TIM_phosphate_binding 99.2 7.2E-10 1.6E-14 95.6 14.1 124 126-289 77-200 (200)
75 cd00381 IMPDH IMPDH: The catal 99.2 2.4E-09 5.3E-14 100.7 17.9 167 123-325 96-320 (325)
76 TIGR03151 enACPred_II putative 99.1 2E-09 4.3E-14 100.5 16.5 150 76-293 46-195 (307)
77 PRK01033 imidazole glycerol ph 99.1 5.5E-10 1.2E-14 101.9 12.2 144 135-316 96-257 (258)
78 COG1304 idi Isopentenyl diphos 99.1 3.1E-10 6.8E-15 107.3 10.6 104 205-325 236-347 (360)
79 PRK05286 dihydroorotate dehydr 99.1 2.1E-09 4.5E-14 102.1 14.8 170 19-215 136-318 (344)
80 PF01645 Glu_synthase: Conserv 99.1 3.3E-09 7.1E-14 100.4 15.0 117 156-292 186-307 (368)
81 TIGR01304 IMP_DH_rel_2 IMP deh 99.1 7.6E-09 1.7E-13 98.4 17.2 170 121-324 143-365 (369)
82 PRK06843 inosine 5-monophospha 99.0 8E-09 1.7E-13 98.9 16.7 167 124-325 156-382 (404)
83 cd04738 DHOD_2_like Dihydrooro 99.0 6.1E-09 1.3E-13 98.3 15.4 171 19-216 128-310 (327)
84 TIGR01305 GMP_reduct_1 guanosi 99.0 2.1E-08 4.5E-13 93.0 18.0 163 124-325 110-330 (343)
85 COG0069 GltB Glutamate synthas 99.0 4E-09 8.7E-14 102.1 13.7 153 156-325 286-477 (485)
86 PRK14024 phosphoribosyl isomer 99.0 3.2E-09 6.9E-14 95.9 12.0 130 136-302 98-235 (241)
87 KOG2334|consensus 99.0 1.6E-09 3.4E-14 101.7 9.8 149 122-298 93-251 (477)
88 PLN02274 inosine-5'-monophosph 99.0 1.6E-08 3.5E-13 100.3 17.3 165 124-324 251-473 (505)
89 PF04131 NanE: Putative N-acet 99.0 1.1E-08 2.4E-13 87.3 13.3 122 135-302 64-185 (192)
90 PRK11750 gltB glutamate syntha 99.0 5.9E-09 1.3E-13 111.9 13.1 152 156-324 979-1168(1485)
91 PTZ00314 inosine-5'-monophosph 99.0 4.5E-08 9.7E-13 97.0 18.5 166 123-323 243-466 (495)
92 TIGR01303 IMP_DH_rel_1 IMP deh 98.9 3.6E-08 7.8E-13 97.0 17.2 167 122-325 226-457 (475)
93 cd04731 HisF The cyclase subun 98.9 9E-09 2E-13 93.1 12.0 123 135-293 93-228 (243)
94 PRK07107 inosine 5-monophospha 98.9 5.4E-08 1.2E-12 96.4 18.3 158 135-325 254-473 (502)
95 PLN02591 tryptophan synthase 98.9 1.4E-07 3.1E-12 85.2 19.4 163 120-293 16-223 (250)
96 PRK01130 N-acetylmannosamine-6 98.9 2.5E-08 5.5E-13 88.9 14.3 135 124-301 79-213 (221)
97 cd04729 NanE N-acetylmannosami 98.9 3.3E-08 7.1E-13 88.0 14.5 133 125-300 84-216 (219)
98 PRK13585 1-(5-phosphoribosyl)- 98.9 2.7E-08 5.9E-13 89.7 13.1 89 194-305 150-238 (241)
99 cd04731 HisF The cyclase subun 98.9 8.3E-09 1.8E-13 93.3 9.7 90 194-306 28-117 (243)
100 CHL00200 trpA tryptophan synth 98.9 2.8E-07 6E-12 84.1 19.4 162 120-292 29-235 (263)
101 TIGR03572 WbuZ glycosyl amidat 98.9 2.1E-08 4.6E-13 90.0 11.4 120 135-292 96-231 (232)
102 TIGR00262 trpA tryptophan synt 98.9 3.3E-07 7.1E-12 83.5 19.0 164 120-293 24-232 (256)
103 KOG0134|consensus 98.9 3.2E-08 7E-13 93.3 12.7 170 120-307 171-366 (400)
104 PF03060 NMO: Nitronate monoox 98.8 4.8E-08 1E-12 92.3 13.7 112 136-294 114-225 (330)
105 cd04730 NPD_like 2-Nitropropan 98.8 1E-07 2.2E-12 85.7 15.0 124 121-294 68-191 (236)
106 PRK02083 imidazole glycerol ph 98.8 7.2E-08 1.6E-12 87.7 13.8 146 136-316 97-250 (253)
107 TIGR00735 hisF imidazoleglycer 98.8 3.7E-08 8E-13 89.7 11.8 107 183-316 143-252 (254)
108 PRK05567 inosine 5'-monophosph 98.8 2E-07 4.3E-12 92.6 17.7 156 135-324 240-455 (486)
109 TIGR00735 hisF imidazoleglycer 98.8 2.7E-08 5.7E-13 90.7 10.6 90 194-306 31-120 (254)
110 PRK00748 1-(5-phosphoribosyl)- 98.8 7.2E-08 1.6E-12 86.5 13.2 78 194-293 147-225 (233)
111 cd04732 HisA HisA. Phosphorib 98.8 5.8E-08 1.2E-12 87.1 12.6 80 194-296 147-226 (234)
112 TIGR00007 phosphoribosylformim 98.8 7.8E-08 1.7E-12 86.2 13.1 79 194-294 146-224 (230)
113 PRK05096 guanosine 5'-monophos 98.8 2.7E-07 5.9E-12 85.6 16.8 155 135-325 122-331 (346)
114 PRK02083 imidazole glycerol ph 98.8 3.6E-08 7.9E-13 89.7 10.2 90 194-306 31-120 (253)
115 TIGR00343 pyridoxal 5'-phospha 98.8 8.6E-08 1.9E-12 86.7 12.1 62 244-307 184-249 (287)
116 PRK07807 inosine 5-monophospha 98.8 4.7E-07 1E-11 89.3 17.8 165 123-325 229-459 (479)
117 TIGR01302 IMP_dehydrog inosine 98.8 2E-07 4.3E-12 91.7 15.0 124 135-292 236-360 (450)
118 cd04741 DHOD_1A_like Dihydroor 98.7 2.9E-07 6.2E-12 85.7 15.0 151 43-216 103-273 (294)
119 PF00478 IMPDH: IMP dehydrogen 98.7 4.1E-07 8.9E-12 85.7 15.9 165 123-325 110-336 (352)
120 COG2070 Dioxygenases related t 98.7 6.2E-08 1.3E-12 91.4 10.3 101 161-293 117-218 (336)
121 cd04727 pdxS PdxS is a subunit 98.7 3.4E-07 7.4E-12 82.8 14.5 131 160-309 100-248 (283)
122 cd04724 Tryptophan_synthase_al 98.7 7.8E-07 1.7E-11 80.4 16.1 158 120-292 14-219 (242)
123 cd00331 IGPS Indole-3-glycerol 98.7 3.4E-07 7.3E-12 81.4 13.5 149 120-293 31-206 (217)
124 PRK13111 trpA tryptophan synth 98.7 2.6E-06 5.7E-11 77.6 19.4 162 120-292 26-232 (258)
125 cd02940 DHPD_FMN Dihydropyrimi 98.7 3.3E-07 7.2E-12 85.4 13.8 144 43-216 113-282 (299)
126 TIGR01304 IMP_DH_rel_2 IMP deh 98.7 1.1E-07 2.5E-12 90.4 10.7 126 156-314 117-252 (369)
127 COG0159 TrpA Tryptophan syntha 98.7 5.4E-06 1.2E-10 74.9 20.2 164 119-292 30-237 (265)
128 cd04732 HisA HisA. Phosphorib 98.6 1.5E-07 3.3E-12 84.4 9.4 90 194-306 30-119 (234)
129 TIGR00736 nifR3_rel_arch TIM-b 98.6 1E-06 2.2E-11 78.7 14.2 134 43-215 80-220 (231)
130 PF01180 DHO_dh: Dihydroorotat 98.6 2.8E-07 6.2E-12 85.7 11.1 166 21-217 96-275 (295)
131 PLN02495 oxidoreductase, actin 98.6 1.3E-07 2.7E-12 90.6 8.7 83 42-142 126-215 (385)
132 PF00290 Trp_syntA: Tryptophan 98.6 7.5E-06 1.6E-10 74.4 19.5 163 120-292 24-230 (259)
133 cd04743 NPD_PKS 2-Nitropropane 98.6 2E-06 4.4E-11 80.1 16.0 154 76-293 38-207 (320)
134 PF04481 DUF561: Protein of un 98.6 1.8E-06 3.9E-11 74.8 13.9 147 121-292 70-218 (242)
135 cd04739 DHOD_like Dihydroorota 98.5 7.1E-06 1.5E-10 77.4 18.2 143 44-217 116-268 (325)
136 COG3010 NanE Putative N-acetyl 98.5 2E-06 4.4E-11 73.9 12.5 122 135-302 98-221 (229)
137 TIGR01769 GGGP geranylgeranylg 98.5 4.8E-06 1E-10 73.0 15.2 44 243-288 162-205 (205)
138 cd04728 ThiG Thiazole synthase 98.5 2.1E-06 4.5E-11 76.4 12.9 81 196-298 134-215 (248)
139 PRK08318 dihydropyrimidine deh 98.5 1.8E-06 3.9E-11 84.3 13.8 78 44-141 117-199 (420)
140 PRK14024 phosphoribosyl isomer 98.5 6.9E-07 1.5E-11 80.7 9.9 89 194-306 33-121 (241)
141 PRK07695 transcriptional regul 98.5 8.7E-07 1.9E-11 77.8 10.0 91 199-309 108-200 (201)
142 PRK07259 dihydroorotate dehydr 98.5 3.2E-06 6.9E-11 78.9 14.0 154 20-216 92-264 (301)
143 PRK08649 inosine 5-monophospha 98.5 7.4E-07 1.6E-11 85.0 9.8 101 157-290 117-217 (368)
144 cd02810 DHOD_DHPD_FMN Dihydroo 98.5 4.7E-06 1E-10 77.2 14.9 158 20-216 99-273 (289)
145 PRK00748 1-(5-phosphoribosyl)- 98.5 9.5E-07 2.1E-11 79.2 9.8 90 194-306 31-120 (233)
146 PRK00208 thiG thiazole synthas 98.5 3.5E-06 7.5E-11 75.1 12.9 81 196-298 134-215 (250)
147 PRK08883 ribulose-phosphate 3- 98.5 1.7E-05 3.7E-10 70.6 17.5 145 122-312 70-217 (220)
148 PRK02506 dihydroorotate dehydr 98.4 6.8E-07 1.5E-11 83.7 8.7 80 43-139 105-188 (310)
149 PRK00278 trpC indole-3-glycero 98.4 7.7E-06 1.7E-10 74.7 15.4 148 121-293 71-245 (260)
150 TIGR00126 deoC deoxyribose-pho 98.4 4.7E-06 1E-10 73.6 13.1 123 135-290 83-206 (211)
151 TIGR01037 pyrD_sub1_fam dihydr 98.4 6E-06 1.3E-10 77.0 13.9 82 43-142 103-189 (300)
152 COG0107 HisF Imidazoleglycerol 98.4 1.8E-06 4E-11 75.5 9.4 90 193-305 30-119 (256)
153 cd00945 Aldolase_Class_I Class 98.4 5.3E-05 1.2E-09 65.6 18.9 134 121-288 66-201 (201)
154 COG0274 DeoC Deoxyribose-phosp 98.4 5.7E-06 1.2E-10 72.6 12.0 105 156-290 107-214 (228)
155 PRK13587 1-(5-phosphoribosyl)- 98.4 9.4E-06 2E-10 73.0 13.7 77 194-292 149-225 (234)
156 cd00958 DhnA Class I fructose- 98.4 2.9E-05 6.4E-10 69.7 17.0 103 160-297 107-222 (235)
157 PRK07226 fructose-bisphosphate 98.3 2.3E-05 4.9E-10 72.0 16.0 123 160-320 124-259 (267)
158 TIGR03572 WbuZ glycosyl amidat 98.3 3.1E-06 6.6E-11 76.0 9.9 89 194-305 31-119 (232)
159 PRK13587 1-(5-phosphoribosyl)- 98.3 3.1E-06 6.6E-11 76.1 9.8 89 194-305 32-121 (234)
160 TIGR03128 RuMP_HxlA 3-hexulose 98.3 2.2E-05 4.7E-10 69.1 15.0 122 126-293 69-191 (206)
161 COG0214 SNZ1 Pyridoxine biosyn 98.3 2.5E-06 5.3E-11 74.6 8.5 68 248-317 197-284 (296)
162 cd04740 DHOD_1B_like Dihydroor 98.3 1.5E-05 3.2E-10 74.2 14.1 154 20-216 90-261 (296)
163 PLN02334 ribulose-phosphate 3- 98.3 8.5E-05 1.8E-09 66.6 17.8 132 122-297 77-210 (229)
164 cd00959 DeoC 2-deoxyribose-5-p 98.3 2.4E-05 5.2E-10 68.9 13.7 119 135-286 82-201 (203)
165 PRK01033 imidazole glycerol ph 98.3 6.2E-06 1.3E-10 75.3 10.0 89 194-305 31-119 (258)
166 PRK09140 2-dehydro-3-deoxy-6-p 98.2 7.6E-05 1.6E-09 65.8 16.0 146 120-293 22-184 (206)
167 PRK13585 1-(5-phosphoribosyl)- 98.2 6.8E-06 1.5E-10 74.1 9.6 90 194-306 33-122 (241)
168 cd04742 NPD_FabD 2-Nitropropan 98.2 5.3E-06 1.1E-10 80.0 9.0 74 205-293 173-253 (418)
169 PF00977 His_biosynth: Histidi 98.2 4.5E-06 9.6E-11 74.9 7.9 89 194-305 30-118 (229)
170 PTZ00170 D-ribulose-5-phosphat 98.2 0.00033 7.1E-09 62.8 19.9 147 121-311 76-222 (228)
171 PRK04128 1-(5-phosphoribosyl)- 98.2 8.4E-06 1.8E-10 73.0 9.2 87 194-305 31-117 (228)
172 cd02812 PcrB_like PcrB_like pr 98.2 9.9E-06 2.1E-10 71.7 9.5 86 190-303 132-218 (219)
173 TIGR00007 phosphoribosylformim 98.2 1.2E-05 2.5E-10 72.1 9.9 90 194-306 29-118 (230)
174 COG0106 HisA Phosphoribosylfor 98.2 1.2E-05 2.6E-10 71.5 9.5 78 194-293 148-226 (241)
175 TIGR02814 pfaD_fam PfaD family 98.1 9E-06 1.9E-10 78.9 9.1 60 234-293 193-258 (444)
176 PF00977 His_biosynth: Histidi 98.1 9.1E-06 2E-10 72.9 8.5 77 194-292 148-224 (229)
177 TIGR00734 hisAF_rel hisA/hisF 98.1 1.1E-05 2.5E-10 71.8 8.9 76 194-292 142-217 (221)
178 PF05690 ThiG: Thiazole biosyn 98.1 7.3E-05 1.6E-09 66.0 13.6 104 161-297 110-214 (247)
179 PRK14114 1-(5-phosphoribosyl)- 98.1 1.1E-05 2.4E-10 72.7 8.6 80 194-296 145-230 (241)
180 PRK13586 1-(5-phosphoribosyl)- 98.1 1.9E-05 4.1E-10 70.9 10.0 89 194-306 31-119 (232)
181 TIGR01949 AroFGH_arch predicte 98.1 0.00017 3.6E-09 65.9 16.1 112 162-309 123-246 (258)
182 PLN02446 (5-phosphoribosyl)-5- 98.1 1.5E-05 3.3E-10 72.2 8.8 85 194-306 44-132 (262)
183 cd04723 HisA_HisF Phosphoribos 98.1 1.3E-05 2.9E-10 72.0 8.5 88 194-306 36-123 (233)
184 PRK09722 allulose-6-phosphate 98.1 0.0014 3E-08 58.6 21.2 127 122-292 71-202 (229)
185 TIGR02129 hisA_euk phosphoribo 98.1 1.9E-05 4.1E-10 71.3 9.3 81 196-305 41-124 (253)
186 PRK05283 deoxyribose-phosphate 98.1 2.7E-05 5.9E-10 70.4 10.1 108 158-299 115-231 (257)
187 PF00218 IGPS: Indole-3-glycer 98.1 4.7E-05 1E-09 69.0 11.6 156 121-302 69-251 (254)
188 cd04726 KGPDC_HPS 3-Keto-L-gul 98.1 0.00015 3.2E-09 63.4 14.5 127 124-298 68-195 (202)
189 CHL00162 thiG thiamin biosynth 98.0 9.3E-05 2E-09 66.0 12.6 100 161-293 124-223 (267)
190 cd04723 HisA_HisF Phosphoribos 98.0 2E-05 4.3E-10 70.9 8.5 77 194-293 147-223 (233)
191 TIGR01768 GGGP-family geranylg 98.0 1.1E-05 2.4E-10 71.5 6.6 58 244-303 165-222 (223)
192 PLN02617 imidazole glycerol ph 98.0 3E-05 6.4E-10 77.6 10.3 94 193-305 267-382 (538)
193 PRK14114 1-(5-phosphoribosyl)- 98.0 3.3E-05 7.2E-10 69.7 9.6 86 194-303 31-116 (241)
194 COG0134 TrpC Indole-3-glycerol 98.0 0.00012 2.6E-09 65.8 12.7 153 121-298 67-245 (254)
195 COG0107 HisF Imidazoleglycerol 98.0 2.9E-05 6.3E-10 68.1 8.3 95 194-315 156-251 (256)
196 cd00564 TMP_TenI Thiamine mono 98.0 3.6E-05 7.7E-10 66.5 9.0 81 200-301 109-190 (196)
197 TIGR01163 rpe ribulose-phospha 98.0 0.00049 1.1E-08 60.4 16.4 133 122-299 68-203 (210)
198 TIGR01919 hisA-trpF 1-(5-phosp 98.0 3.2E-05 6.9E-10 69.9 8.7 80 194-296 150-232 (243)
199 TIGR01919 hisA-trpF 1-(5-phosp 97.9 6.4E-05 1.4E-09 68.0 10.0 88 194-305 32-119 (243)
200 cd03316 MR_like Mandelate race 97.9 0.00023 4.9E-09 68.0 14.1 132 121-290 139-272 (357)
201 COG1646 Predicted phosphate-bi 97.9 0.00035 7.6E-09 61.6 13.8 57 245-306 181-237 (240)
202 PF01791 DeoC: DeoC/LacD famil 97.9 0.00018 3.9E-09 64.8 12.5 125 135-292 89-234 (236)
203 PRK04169 geranylgeranylglycery 97.9 2.8E-05 6E-10 69.5 7.0 50 245-297 171-221 (232)
204 PF03437 BtpA: BtpA family; I 97.9 0.00084 1.8E-08 60.8 16.3 130 127-294 97-233 (254)
205 PRK07565 dihydroorotate dehydr 97.9 0.0003 6.5E-09 66.7 14.0 133 56-217 128-270 (334)
206 cd00429 RPE Ribulose-5-phospha 97.9 0.00077 1.7E-08 59.1 15.8 134 123-301 70-206 (211)
207 PRK13586 1-(5-phosphoribosyl)- 97.9 5.6E-05 1.2E-09 67.8 8.3 76 194-292 147-222 (232)
208 TIGR00259 thylakoid_BtpA membr 97.9 0.00039 8.5E-09 63.0 13.6 129 127-293 96-232 (257)
209 PRK08745 ribulose-phosphate 3- 97.9 0.0019 4.2E-08 57.6 17.7 141 122-308 74-217 (223)
210 PRK07028 bifunctional hexulose 97.9 0.00046 9.9E-09 67.7 15.0 126 125-298 73-199 (430)
211 PRK14057 epimerase; Provisiona 97.9 0.0017 3.7E-08 58.7 17.4 158 122-317 87-248 (254)
212 PRK13957 indole-3-glycerol-pho 97.8 0.00049 1.1E-08 62.0 13.8 55 245-301 188-242 (247)
213 PRK00043 thiE thiamine-phospha 97.8 0.00014 3.1E-09 64.0 10.4 51 245-298 147-197 (212)
214 PLN02446 (5-phosphoribosyl)-5- 97.8 8.3E-05 1.8E-09 67.4 8.7 81 194-296 164-247 (262)
215 COG0106 HisA Phosphoribosylfor 97.8 8.3E-05 1.8E-09 66.2 8.5 89 194-305 32-120 (241)
216 PRK08091 ribulose-phosphate 3- 97.8 0.0028 6E-08 56.6 17.3 133 122-297 80-215 (228)
217 PLN02617 imidazole glycerol ph 97.8 0.00018 3.8E-09 72.1 10.8 95 194-315 439-534 (538)
218 PRK05581 ribulose-phosphate 3- 97.8 0.002 4.3E-08 57.1 16.4 135 122-301 73-210 (220)
219 PRK09427 bifunctional indole-3 97.8 0.00023 4.9E-09 69.9 11.2 76 245-322 196-271 (454)
220 PRK06512 thiamine-phosphate py 97.7 0.00026 5.7E-09 63.1 10.2 70 205-293 128-197 (221)
221 cd03319 L-Ala-DL-Glu_epimerase 97.7 0.0015 3.1E-08 61.4 15.8 135 122-302 135-271 (316)
222 PRK13307 bifunctional formalde 97.7 0.0052 1.1E-07 59.2 19.6 135 126-310 243-378 (391)
223 PRK02615 thiamine-phosphate py 97.7 0.00023 4.9E-09 67.5 10.1 48 243-293 280-327 (347)
224 PRK06552 keto-hydroxyglutarate 97.7 0.0024 5.2E-08 56.6 15.9 106 127-292 82-187 (213)
225 PRK08005 epimerase; Validated 97.7 0.0037 8E-08 55.2 16.6 130 122-297 70-199 (210)
226 PF01884 PcrB: PcrB family; I 97.7 7.9E-05 1.7E-09 66.3 6.0 55 249-306 173-227 (230)
227 COG0352 ThiE Thiamine monophos 97.7 0.00055 1.2E-08 60.4 11.1 75 205-298 121-195 (211)
228 KOG1606|consensus 97.7 0.00011 2.3E-09 63.6 6.2 66 258-323 206-291 (296)
229 PRK13802 bifunctional indole-3 97.7 0.00099 2.2E-08 68.5 14.3 58 244-302 196-253 (695)
230 cd00452 KDPG_aldolase KDPG and 97.6 0.00094 2E-08 58.1 12.2 45 246-292 131-175 (190)
231 PF02581 TMP-TENI: Thiamine mo 97.6 0.00017 3.7E-09 62.2 7.0 73 199-291 108-180 (180)
232 PRK07455 keto-hydroxyglutarate 97.6 0.0021 4.5E-08 55.8 13.3 70 195-292 115-184 (187)
233 COG0036 Rpe Pentose-5-phosphat 97.6 0.006 1.3E-07 53.7 15.9 137 121-302 72-210 (220)
234 COG2022 ThiG Uncharacterized e 97.5 0.0023 5E-08 56.3 13.0 79 197-297 142-221 (262)
235 PRK11840 bifunctional sulfur c 97.5 0.0058 1.3E-07 56.9 16.0 44 247-292 239-282 (326)
236 PLN02460 indole-3-glycerol-pho 97.5 0.0028 6E-08 59.6 14.0 56 245-301 268-329 (338)
237 PRK04302 triosephosphate isome 97.5 0.0088 1.9E-07 53.3 16.8 53 247-301 162-214 (223)
238 KOG4175|consensus 97.5 0.0065 1.4E-07 52.4 14.9 163 122-292 31-239 (268)
239 PRK07114 keto-hydroxyglutarate 97.5 0.0055 1.2E-07 54.5 14.6 148 119-292 26-192 (222)
240 PRK10415 tRNA-dihydrouridine s 97.5 0.0018 4E-08 61.0 12.2 140 44-215 78-224 (321)
241 TIGR00693 thiE thiamine-phosph 97.4 0.00091 2E-08 58.2 9.3 47 245-293 139-185 (196)
242 TIGR00734 hisAF_rel hisA/hisF 97.4 0.00065 1.4E-08 60.6 8.4 84 194-303 37-122 (221)
243 TIGR02129 hisA_euk phosphoribo 97.4 0.00059 1.3E-08 61.7 8.1 75 195-292 159-236 (253)
244 PRK04128 1-(5-phosphoribosyl)- 97.4 0.0004 8.8E-09 62.2 6.7 72 195-293 145-216 (228)
245 COG0269 SgbH 3-hexulose-6-phos 97.4 0.012 2.6E-07 51.6 15.5 139 125-306 72-212 (217)
246 KOG2550|consensus 97.4 0.0012 2.7E-08 62.5 9.9 123 135-291 263-386 (503)
247 TIGR00742 yjbN tRNA dihydrouri 97.4 0.0046 9.9E-08 58.2 13.9 146 44-215 68-223 (318)
248 PRK13398 3-deoxy-7-phosphohept 97.4 0.038 8.2E-07 50.6 19.4 95 178-290 133-233 (266)
249 PRK13397 3-deoxy-7-phosphohept 97.4 0.014 3E-07 52.8 16.1 93 178-289 121-220 (250)
250 cd03315 MLE_like Muconate lact 97.3 0.012 2.6E-07 53.8 16.0 125 123-291 87-213 (265)
251 PRK13813 orotidine 5'-phosphat 97.3 0.0089 1.9E-07 52.9 14.5 137 122-310 69-212 (215)
252 PRK12858 tagatose 1,6-diphosph 97.3 0.0077 1.7E-07 57.0 14.3 174 126-323 112-312 (340)
253 PRK03512 thiamine-phosphate py 97.3 0.0025 5.4E-08 56.4 10.1 81 205-302 119-199 (211)
254 cd02911 arch_FMN Archeal FMN-b 97.2 0.0056 1.2E-07 55.0 12.2 129 44-215 86-220 (233)
255 TIGR01361 DAHP_synth_Bsub phos 97.2 0.043 9.4E-07 50.1 18.0 93 178-289 131-230 (260)
256 PRK12290 thiE thiamine-phospha 97.2 0.0022 4.9E-08 62.1 10.0 68 243-313 341-415 (437)
257 PRK06806 fructose-bisphosphate 97.2 0.025 5.3E-07 52.3 16.5 78 195-293 155-235 (281)
258 cd00405 PRAI Phosphoribosylant 97.2 0.0068 1.5E-07 53.2 12.2 129 121-298 61-190 (203)
259 TIGR02320 PEP_mutase phosphoen 97.2 0.063 1.4E-06 49.7 18.9 180 68-292 52-244 (285)
260 COG0434 SgcQ Predicted TIM-bar 97.2 0.041 9E-07 48.9 16.6 149 105-295 85-239 (263)
261 PRK08673 3-deoxy-7-phosphohept 97.2 0.064 1.4E-06 50.7 19.1 93 178-289 199-298 (335)
262 PRK08999 hypothetical protein; 97.2 0.00093 2E-08 62.6 6.8 46 243-291 266-311 (312)
263 cd00331 IGPS Indole-3-glycerol 97.2 0.0026 5.6E-08 56.4 9.2 99 179-304 10-115 (217)
264 PRK05848 nicotinate-nucleotide 97.2 0.0051 1.1E-07 56.5 11.2 33 259-292 229-261 (273)
265 PRK10550 tRNA-dihydrouridine s 97.1 0.012 2.6E-07 55.3 13.8 142 44-215 76-224 (312)
266 TIGR00737 nifR3_yhdG putative 97.1 0.0092 2E-07 56.2 12.8 140 44-215 76-222 (319)
267 PRK00230 orotidine 5'-phosphat 97.1 0.03 6.6E-07 50.2 15.4 66 197-297 139-215 (230)
268 TIGR01182 eda Entner-Doudoroff 97.1 0.018 3.8E-07 50.6 13.3 125 119-303 19-143 (204)
269 TIGR00078 nadC nicotinate-nucl 97.0 0.0099 2.1E-07 54.4 11.6 89 163-290 164-252 (265)
270 PRK06801 hypothetical protein; 97.0 0.11 2.4E-06 48.0 18.6 77 196-292 159-237 (286)
271 TIGR00343 pyridoxal 5'-phospha 97.0 0.011 2.4E-07 54.0 11.2 83 162-286 57-139 (287)
272 PF00834 Ribul_P_3_epim: Ribul 96.9 0.0042 9.1E-08 54.5 8.3 127 123-293 70-199 (201)
273 TIGR01859 fruc_bis_ald_ fructo 96.9 0.05 1.1E-06 50.3 15.8 77 195-292 155-234 (282)
274 cd01572 QPRTase Quinolinate ph 96.9 0.012 2.6E-07 54.0 11.2 60 205-292 199-258 (268)
275 PRK00507 deoxyribose-phosphate 96.9 0.0064 1.4E-07 54.2 9.1 118 53-215 88-208 (221)
276 PRK08227 autoinducer 2 aldolas 96.9 0.047 1E-06 49.9 14.8 171 100-321 75-255 (264)
277 PRK05718 keto-hydroxyglutarate 96.9 0.11 2.3E-06 46.1 16.6 108 126-292 80-187 (212)
278 PRK07428 nicotinate-nucleotide 96.9 0.013 2.9E-07 54.1 11.2 69 195-292 206-275 (288)
279 PF00478 IMPDH: IMP dehydrogen 96.8 0.0044 9.5E-08 58.8 8.1 82 179-288 96-177 (352)
280 PRK06015 keto-hydroxyglutarate 96.8 0.063 1.4E-06 47.1 14.7 123 119-303 15-139 (201)
281 cd00452 KDPG_aldolase KDPG and 96.8 0.027 5.9E-07 48.8 12.3 125 120-305 16-140 (190)
282 PRK12457 2-dehydro-3-deoxyphos 96.8 0.21 4.7E-06 45.6 18.1 93 178-289 129-238 (281)
283 PRK08072 nicotinate-nucleotide 96.8 0.017 3.7E-07 53.2 11.3 45 247-292 220-264 (277)
284 cd03329 MR_like_4 Mandelate ra 96.8 0.044 9.6E-07 52.6 14.5 125 122-288 144-271 (368)
285 PF01081 Aldolase: KDPG and KH 96.7 0.024 5.1E-07 49.5 11.4 90 181-303 9-98 (196)
286 PRK05742 nicotinate-nucleotide 96.7 0.019 4.1E-07 52.9 11.3 45 247-292 221-265 (277)
287 COG1830 FbaB DhnA-type fructos 96.7 0.053 1.1E-06 49.1 13.8 150 98-293 76-242 (265)
288 cd04727 pdxS PdxS is a subunit 96.7 0.021 4.5E-07 52.2 11.1 84 161-286 54-137 (283)
289 PLN02898 HMP-P kinase/thiamin- 96.7 0.0088 1.9E-07 59.9 9.6 47 244-293 431-480 (502)
290 cd00381 IMPDH IMPDH: The catal 96.7 0.025 5.4E-07 53.4 11.8 70 194-288 94-163 (325)
291 PRK13396 3-deoxy-7-phosphohept 96.6 0.14 3E-06 48.7 16.6 115 178-310 207-338 (352)
292 TIGR01740 pyrF orotidine 5'-ph 96.6 0.07 1.5E-06 47.2 13.8 177 44-298 12-205 (213)
293 PF01081 Aldolase: KDPG and KH 96.6 0.023 5.1E-07 49.5 10.4 109 125-292 72-180 (196)
294 PRK07114 keto-hydroxyglutarate 96.6 0.021 4.7E-07 50.8 10.3 92 181-303 16-109 (222)
295 TIGR01362 KDO8P_synth 3-deoxy- 96.6 0.14 3E-06 46.2 15.2 91 178-289 115-222 (258)
296 cd01573 modD_like ModD; Quinol 96.5 0.037 7.9E-07 50.9 11.7 60 205-290 200-260 (272)
297 cd02801 DUS_like_FMN Dihydrour 96.5 0.035 7.7E-07 49.3 11.2 141 43-216 67-214 (231)
298 TIGR01182 eda Entner-Doudoroff 96.5 0.016 3.5E-07 50.9 8.7 90 181-303 9-98 (204)
299 TIGR01306 GMP_reduct_2 guanosi 96.5 0.041 8.8E-07 51.7 11.9 81 182-288 83-165 (321)
300 PRK06852 aldolase; Validated 96.5 0.14 3.1E-06 47.6 15.3 117 178-321 166-296 (304)
301 PRK06015 keto-hydroxyglutarate 96.5 0.016 3.4E-07 50.8 8.5 90 181-303 5-94 (201)
302 cd00377 ICL_PEPM Members of th 96.5 0.089 1.9E-06 47.6 13.7 127 160-305 54-194 (243)
303 PRK05198 2-dehydro-3-deoxyphos 96.5 0.16 3.6E-06 45.9 15.0 91 178-289 123-230 (264)
304 cd01568 QPRTase_NadC Quinolina 96.5 0.034 7.5E-07 51.0 11.0 32 259-291 227-258 (269)
305 PTZ00314 inosine-5'-monophosph 96.4 0.014 2.9E-07 58.3 8.7 69 195-288 242-310 (495)
306 PRK12595 bifunctional 3-deoxy- 96.4 0.18 3.9E-06 48.3 15.8 94 178-290 224-324 (360)
307 PRK07315 fructose-bisphosphate 96.3 0.23 5E-06 46.2 15.6 77 199-293 159-237 (293)
308 PRK13957 indole-3-glycerol-pho 96.3 0.041 8.8E-07 49.7 10.2 74 194-292 62-135 (247)
309 TIGR01302 IMP_dehydrog inosine 96.2 0.019 4E-07 56.8 8.5 69 195-288 225-293 (450)
310 COG0329 DapA Dihydrodipicolina 96.2 0.053 1.1E-06 50.6 11.0 89 190-297 22-114 (299)
311 PRK09517 multifunctional thiam 96.2 0.027 6E-07 59.1 10.0 49 244-293 150-199 (755)
312 TIGR02320 PEP_mutase phosphoen 96.2 0.23 4.9E-06 46.0 14.7 129 160-307 63-206 (285)
313 PRK05718 keto-hydroxyglutarate 96.2 0.077 1.7E-06 46.9 11.1 90 181-303 16-105 (212)
314 PF01207 Dus: Dihydrouridine s 96.2 0.06 1.3E-06 50.5 11.1 140 44-215 67-213 (309)
315 PLN03033 2-dehydro-3-deoxyphos 96.1 0.34 7.3E-06 44.4 15.1 91 178-289 129-241 (290)
316 PRK06552 keto-hydroxyglutarate 96.1 0.081 1.7E-06 46.9 10.9 92 181-303 14-106 (213)
317 COG2876 AroA 3-deoxy-D-arabino 96.1 0.1 2.3E-06 47.1 11.5 93 178-288 151-249 (286)
318 PRK05437 isopentenyl pyrophosp 96.1 0.18 3.8E-06 48.2 13.9 139 120-289 77-218 (352)
319 cd00952 CHBPH_aldolase Trans-o 96.0 0.07 1.5E-06 50.0 11.0 86 190-293 26-115 (309)
320 COG0042 tRNA-dihydrouridine sy 96.0 0.093 2E-06 49.5 11.8 129 56-215 93-228 (323)
321 TIGR01305 GMP_reduct_1 guanosi 96.0 0.091 2E-06 49.3 11.5 76 187-288 101-178 (343)
322 TIGR01303 IMP_DH_rel_1 IMP deh 96.0 0.026 5.7E-07 55.9 8.4 70 194-288 225-294 (475)
323 PRK04147 N-acetylneuraminate l 96.0 0.082 1.8E-06 49.1 11.3 87 190-294 21-112 (293)
324 PRK08385 nicotinate-nucleotide 96.0 0.081 1.8E-06 48.7 10.9 95 162-292 168-263 (278)
325 PRK11320 prpB 2-methylisocitra 96.0 0.56 1.2E-05 43.6 16.4 178 68-292 52-238 (292)
326 PRK06559 nicotinate-nucleotide 96.0 0.091 2E-06 48.6 11.0 96 158-292 178-273 (290)
327 TIGR02313 HpaI-NOT-DapA 2,4-di 96.0 0.08 1.7E-06 49.2 10.9 87 190-294 18-108 (294)
328 cd00951 KDGDH 5-dehydro-4-deox 96.0 0.082 1.8E-06 49.0 11.0 85 190-293 18-106 (289)
329 PF04481 DUF561: Protein of un 96.0 0.074 1.6E-06 46.6 9.7 76 189-298 23-100 (242)
330 PRK09250 fructose-bisphosphate 95.9 0.41 8.8E-06 45.3 15.2 173 99-294 125-324 (348)
331 cd00377 ICL_PEPM Members of th 95.9 0.78 1.7E-05 41.4 16.8 136 123-292 84-230 (243)
332 PRK09140 2-dehydro-3-deoxy-6-p 95.8 0.049 1.1E-06 48.0 8.5 81 181-289 11-91 (206)
333 cd02809 alpha_hydroxyacid_oxid 95.8 0.1 2.3E-06 48.6 11.0 86 179-288 115-200 (299)
334 TIGR02321 Pphn_pyruv_hyd phosp 95.8 1.2 2.7E-05 41.3 17.9 182 68-293 49-240 (290)
335 COG0800 Eda 2-keto-3-deoxy-6-p 95.8 0.11 2.4E-06 45.6 10.3 68 191-286 23-90 (211)
336 KOG3111|consensus 95.8 0.33 7.1E-06 41.9 12.8 139 123-306 77-217 (224)
337 PF01729 QRPTase_C: Quinolinat 95.8 0.098 2.1E-06 44.6 9.7 78 181-292 82-159 (169)
338 cd02803 OYE_like_FMN_family Ol 95.8 0.34 7.5E-06 45.5 14.5 160 33-215 132-311 (327)
339 PLN02417 dihydrodipicolinate s 95.8 0.11 2.4E-06 47.9 11.0 87 190-294 19-109 (280)
340 PRK05096 guanosine 5'-monophos 95.7 0.13 2.8E-06 48.4 11.1 76 187-288 102-179 (346)
341 PRK06106 nicotinate-nucleotide 95.7 0.15 3.4E-06 46.9 11.5 95 159-292 176-270 (281)
342 TIGR02319 CPEP_Pphonmut carbox 95.7 1.2 2.5E-05 41.5 17.2 178 68-293 51-238 (294)
343 PRK03620 5-dehydro-4-deoxygluc 95.7 0.13 2.9E-06 48.0 11.1 85 190-293 25-113 (303)
344 PRK11572 copper homeostasis pr 95.7 0.66 1.4E-05 41.9 15.0 146 100-288 52-198 (248)
345 TIGR02317 prpB methylisocitrat 95.6 1 2.3E-05 41.6 16.7 177 68-292 47-233 (285)
346 PRK05458 guanosine 5'-monophos 95.6 0.16 3.5E-06 47.8 11.4 82 181-288 85-168 (326)
347 PF04309 G3P_antiterm: Glycero 95.6 0.0069 1.5E-07 51.7 2.0 85 178-293 90-174 (175)
348 cd04729 NanE N-acetylmannosami 95.6 0.35 7.7E-06 42.8 13.1 120 119-288 26-150 (219)
349 PF13714 PEP_mutase: Phosphoen 95.6 0.94 2E-05 40.8 15.8 177 68-293 43-224 (238)
350 TIGR03569 NeuB_NnaB N-acetylne 95.6 0.94 2E-05 42.8 16.4 115 178-314 132-259 (329)
351 PRK00125 pyrF orotidine 5'-pho 95.6 1 2.2E-05 41.5 16.2 192 39-297 37-255 (278)
352 PF03932 CutC: CutC family; I 95.5 0.17 3.7E-06 44.3 10.6 145 100-287 51-198 (201)
353 COG0646 MetH Methionine syntha 95.5 0.98 2.1E-05 41.7 15.6 162 119-308 52-244 (311)
354 cd00945 Aldolase_Class_I Class 95.5 0.49 1.1E-05 40.5 13.5 128 120-290 13-151 (201)
355 PRK07107 inosine 5-monophospha 95.5 0.067 1.5E-06 53.5 8.9 71 194-288 242-312 (502)
356 PRK08185 hypothetical protein; 95.5 1.2 2.5E-05 41.3 16.4 79 195-292 151-232 (283)
357 TIGR02127 pyrF_sub2 orotidine 95.5 0.71 1.5E-05 42.2 14.8 189 39-294 37-250 (261)
358 TIGR03249 KdgD 5-dehydro-4-deo 95.5 0.17 3.7E-06 47.0 11.0 85 190-293 23-111 (296)
359 PRK06543 nicotinate-nucleotide 95.4 0.23 5E-06 45.8 11.4 91 162-291 178-268 (281)
360 PF04131 NanE: Putative N-acet 95.4 0.1 2.2E-06 45.0 8.4 108 124-286 3-117 (192)
361 PRK13397 3-deoxy-7-phosphohept 95.4 0.043 9.4E-07 49.6 6.4 114 191-324 27-141 (250)
362 PRK06843 inosine 5-monophospha 95.4 0.08 1.7E-06 51.3 8.6 69 195-288 154-222 (404)
363 PRK11815 tRNA-dihydrouridine s 95.4 0.32 6.9E-06 46.1 12.6 87 44-142 78-171 (333)
364 COG5016 Pyruvate/oxaloacetate 95.3 0.35 7.5E-06 46.3 12.5 133 118-288 96-231 (472)
365 cd00954 NAL N-Acetylneuraminic 95.3 0.22 4.7E-06 46.2 11.0 87 190-294 18-109 (288)
366 PRK01130 N-acetylmannosamine-6 95.3 0.49 1.1E-05 41.9 12.9 120 119-288 22-146 (221)
367 TIGR00683 nanA N-acetylneurami 95.3 0.23 4.9E-06 46.1 11.1 86 190-293 18-108 (290)
368 cd00408 DHDPS-like Dihydrodipi 95.3 0.81 1.8E-05 42.0 14.8 86 120-219 18-103 (281)
369 KOG1799|consensus 95.2 0.0039 8.4E-08 58.0 -0.7 61 233-294 21-81 (471)
370 KOG2335|consensus 95.2 0.29 6.3E-06 46.2 11.5 143 44-217 87-235 (358)
371 cd03321 mandelate_racemase Man 95.2 0.6 1.3E-05 44.5 14.1 98 160-291 172-270 (355)
372 PRK07998 gatY putative fructos 95.2 2.6 5.7E-05 38.9 18.2 78 195-292 155-233 (283)
373 PRK09016 quinolinate phosphori 95.2 0.26 5.7E-06 45.7 11.0 92 160-291 192-283 (296)
374 cd06556 ICL_KPHMT Members of t 95.2 0.31 6.6E-06 44.0 11.3 110 160-306 57-190 (240)
375 PLN02274 inosine-5'-monophosph 95.1 0.08 1.7E-06 53.0 8.2 69 195-288 249-317 (505)
376 PF00701 DHDPS: Dihydrodipicol 95.1 2.7 5.8E-05 38.8 19.6 178 56-304 36-219 (289)
377 COG1954 GlpP Glycerol-3-phosph 95.1 0.089 1.9E-06 44.4 7.1 80 178-288 94-173 (181)
378 cd04725 OMP_decarboxylase_like 95.1 0.65 1.4E-05 41.1 13.2 174 44-294 12-206 (216)
379 PRK00278 trpC indole-3-glycero 95.1 0.17 3.7E-06 46.2 9.7 108 178-316 48-162 (260)
380 PLN02979 glycolate oxidase 95.1 0.17 3.8E-06 48.2 9.9 106 179-289 120-252 (366)
381 PRK07896 nicotinate-nucleotide 95.1 0.31 6.7E-06 45.1 11.2 96 160-292 183-278 (289)
382 cd03328 MR_like_3 Mandelate ra 95.0 0.59 1.3E-05 44.6 13.5 122 123-288 140-265 (352)
383 TIGR03586 PseI pseudaminic aci 95.0 2 4.3E-05 40.6 16.7 115 178-314 133-258 (327)
384 TIGR02151 IPP_isom_2 isopenten 95.0 0.47 1E-05 44.9 12.6 139 120-289 70-211 (333)
385 COG3684 LacD Tagatose-1,6-bisp 95.0 1.2 2.6E-05 40.3 14.1 133 161-322 146-294 (306)
386 COG4948 L-alanine-DL-glutamate 95.0 0.59 1.3E-05 44.9 13.5 123 123-288 145-269 (372)
387 cd00950 DHDPS Dihydrodipicolin 95.0 0.3 6.6E-06 45.0 11.0 86 190-293 18-107 (284)
388 PLN02535 glycolate oxidase 94.9 0.27 5.9E-06 47.1 10.7 105 179-288 123-251 (364)
389 KOG4201|consensus 94.9 0.12 2.5E-06 45.3 7.3 50 245-294 223-272 (289)
390 cd03326 MR_like_1 Mandelate ra 94.9 0.93 2E-05 43.9 14.5 123 123-288 162-290 (385)
391 cd02811 IDI-2_FMN Isopentenyl- 94.9 0.9 1.9E-05 42.9 14.1 136 120-289 69-210 (326)
392 COG0329 DapA Dihydrodipicolina 94.8 0.75 1.6E-05 42.9 13.3 87 120-220 25-111 (299)
393 PRK13306 ulaD 3-keto-L-gulonat 94.8 1.1 2.3E-05 39.8 13.6 136 129-310 76-211 (216)
394 TIGR00674 dapA dihydrodipicoli 94.8 0.39 8.4E-06 44.4 11.2 87 190-294 16-106 (285)
395 PRK06978 nicotinate-nucleotide 94.8 0.37 8E-06 44.7 10.9 66 195-291 215-280 (294)
396 PRK05567 inosine 5'-monophosph 94.8 0.11 2.5E-06 51.8 8.1 69 195-288 229-297 (486)
397 PRK07807 inosine 5-monophospha 94.7 0.14 3E-06 50.9 8.5 70 194-288 227-296 (479)
398 cd06556 ICL_KPHMT Members of t 94.7 0.61 1.3E-05 42.1 11.9 136 69-267 47-199 (240)
399 cd03332 LMO_FMN L-Lactate 2-mo 94.7 0.34 7.4E-06 46.7 10.9 105 179-288 137-281 (383)
400 cd02922 FCB2_FMN Flavocytochro 94.7 0.3 6.5E-06 46.5 10.3 106 179-289 117-242 (344)
401 PRK11320 prpB 2-methylisocitra 94.6 0.82 1.8E-05 42.5 12.8 126 160-306 63-201 (292)
402 cd03325 D-galactonate_dehydrat 94.5 1.4 3.1E-05 41.9 14.7 70 135-212 138-207 (352)
403 KOG0399|consensus 94.5 0.2 4.4E-06 53.7 9.2 69 257-325 1167-1270(2142)
404 TIGR01858 tag_bisphos_ald clas 94.5 0.9 2E-05 42.0 12.7 165 115-320 22-213 (282)
405 TIGR02708 L_lactate_ox L-lacta 94.4 0.43 9.3E-06 45.7 10.7 105 179-288 132-256 (367)
406 PRK15072 bifunctional D-altron 94.4 1.2 2.6E-05 43.3 14.2 46 160-212 192-237 (404)
407 cd03327 MR_like_2 Mandelate ra 94.3 1.4 3E-05 41.8 14.1 127 123-287 122-251 (341)
408 PRK03170 dihydrodipicolinate s 94.3 0.51 1.1E-05 43.7 10.9 86 190-293 19-108 (292)
409 PRK14017 galactonate dehydrata 94.3 1.6 3.4E-05 42.2 14.6 131 123-288 126-258 (382)
410 PLN02493 probable peroxisomal 94.3 0.46 9.9E-06 45.5 10.5 106 179-289 121-253 (367)
411 TIGR01334 modD putative molybd 94.3 0.55 1.2E-05 43.2 10.7 79 179-291 188-266 (277)
412 PRK12581 oxaloacetate decarbox 94.2 2.1 4.6E-05 42.3 15.4 134 119-290 104-240 (468)
413 PRK09853 putative selenate red 94.2 0.83 1.8E-05 49.4 13.4 72 236-308 324-396 (1019)
414 cd03324 rTSbeta_L-fuconate_deh 94.2 1.4 3E-05 43.1 14.1 72 124-212 199-271 (415)
415 PF00218 IGPS: Indole-3-glycer 94.2 0.31 6.7E-06 44.3 8.8 82 194-302 69-150 (254)
416 cd04734 OYE_like_3_FMN Old yel 94.1 1.6 3.6E-05 41.4 14.1 155 40-215 138-315 (343)
417 cd02932 OYE_YqiM_FMN Old yello 94.1 1.3 2.9E-05 41.8 13.4 159 34-215 146-320 (336)
418 PLN02716 nicotinate-nucleotide 94.0 0.64 1.4E-05 43.4 10.7 66 207-291 228-293 (308)
419 COG0157 NadC Nicotinate-nucleo 94.0 0.27 5.9E-06 44.9 8.0 94 159-291 170-265 (280)
420 PRK12330 oxaloacetate decarbox 94.0 2.6 5.6E-05 42.1 15.5 134 119-289 96-233 (499)
421 TIGR01163 rpe ribulose-phospha 94.0 1.1 2.4E-05 38.9 11.9 120 121-289 12-134 (210)
422 PF00793 DAHP_synth_1: DAHP sy 93.9 2.8 6E-05 38.5 14.7 94 178-289 130-235 (270)
423 COG0800 Eda 2-keto-3-deoxy-6-p 93.9 1.1 2.4E-05 39.4 11.3 118 120-299 25-144 (211)
424 PRK06852 aldolase; Validated 93.9 2.3 4.9E-05 39.7 14.1 113 120-279 188-301 (304)
425 COG3010 NanE Putative N-acetyl 93.9 1.1 2.3E-05 39.2 11.0 114 119-286 32-152 (229)
426 PRK13125 trpA tryptophan synth 93.9 1.7 3.7E-05 39.2 13.1 124 43-200 18-150 (244)
427 PRK06256 biotin synthase; Vali 93.9 2.7 5.9E-05 39.6 15.1 168 124-316 153-323 (336)
428 PF01116 F_bP_aldolase: Fructo 93.8 5.5 0.00012 36.9 17.1 79 195-292 157-239 (287)
429 cd03322 rpsA The starvation se 93.8 1.6 3.4E-05 41.8 13.4 94 161-288 150-244 (361)
430 TIGR02319 CPEP_Pphonmut carbox 93.8 1.5 3.3E-05 40.7 12.8 128 160-307 62-201 (294)
431 PF09370 TIM-br_sig_trns: TIM- 93.8 0.94 2E-05 41.2 11.0 138 121-291 96-249 (268)
432 cd04737 LOX_like_FMN L-Lactate 93.8 0.8 1.7E-05 43.7 11.1 104 179-287 124-248 (351)
433 cd04722 TIM_phosphate_binding 93.7 1.6 3.4E-05 36.8 12.2 91 178-291 56-146 (200)
434 TIGR03315 Se_ygfK putative sel 93.7 0.44 9.6E-06 51.5 10.4 73 236-309 322-395 (1012)
435 cd06557 KPHMT-like Ketopantoat 93.7 0.69 1.5E-05 42.1 10.2 53 160-217 57-113 (254)
436 PRK07709 fructose-bisphosphate 93.7 4.1 8.9E-05 37.7 15.4 79 195-292 158-237 (285)
437 COG2513 PrpB PEP phosphonomuta 93.7 0.44 9.6E-06 43.7 8.9 157 126-307 31-202 (289)
438 TIGR00289 conserved hypothetic 93.7 2.2 4.7E-05 38.0 13.1 109 178-315 57-172 (222)
439 PRK13523 NADPH dehydrogenase N 93.7 1.2 2.5E-05 42.4 12.1 154 34-214 134-304 (337)
440 cd04736 MDH_FMN Mandelate dehy 93.7 0.84 1.8E-05 43.7 11.1 41 245-288 224-264 (361)
441 TIGR02317 prpB methylisocitrat 93.7 2.1 4.5E-05 39.7 13.4 127 160-306 58-196 (285)
442 cd00952 CHBPH_aldolase Trans-o 93.5 1.7 3.6E-05 40.8 12.8 86 120-219 29-114 (309)
443 PRK06096 molybdenum transport 93.5 0.91 2E-05 42.0 10.8 91 162-290 175-266 (284)
444 COG0134 TrpC Indole-3-glycerol 93.5 0.71 1.5E-05 41.8 9.8 109 178-317 44-159 (254)
445 cd04726 KGPDC_HPS 3-Keto-L-gul 93.5 2.3 4.9E-05 36.8 12.9 119 123-289 13-134 (202)
446 cd00564 TMP_TenI Thiamine mono 93.4 2.4 5.2E-05 36.1 12.9 27 264-290 98-124 (196)
447 PRK00311 panB 3-methyl-2-oxobu 93.4 3.2 6.9E-05 38.0 14.1 43 194-267 162-204 (264)
448 TIGR01362 KDO8P_synth 3-deoxy- 93.4 0.18 3.9E-06 45.5 5.7 62 235-303 52-113 (258)
449 cd00950 DHDPS Dihydrodipicolin 93.4 2.9 6.3E-05 38.4 14.0 86 119-218 20-105 (284)
450 TIGR00640 acid_CoA_mut_C methy 93.4 0.96 2.1E-05 36.9 9.6 93 183-305 33-126 (132)
451 cd04733 OYE_like_2_FMN Old yel 93.3 3 6.4E-05 39.5 14.2 155 40-215 146-322 (338)
452 PRK03620 5-dehydro-4-deoxygluc 93.2 2.3 5E-05 39.7 13.1 85 120-219 28-112 (303)
453 cd00951 KDGDH 5-dehydro-4-deox 93.2 2.3 5E-05 39.4 13.0 86 119-219 20-105 (289)
454 PRK08255 salicylyl-CoA 5-hydro 93.1 2 4.3E-05 45.5 13.9 158 34-215 543-717 (765)
455 TIGR01859 fruc_bis_ald_ fructo 93.1 2.8 6E-05 38.8 13.2 133 118-290 25-177 (282)
456 PRK14042 pyruvate carboxylase 93.0 3.6 7.9E-05 42.1 15.1 132 119-289 95-230 (596)
457 cd01571 NAPRTase_B Nicotinate 93.0 1.9 4.2E-05 40.2 12.3 34 258-292 244-277 (302)
458 COG0269 SgbH 3-hexulose-6-phos 93.0 2.2 4.7E-05 37.7 11.7 126 121-291 14-140 (217)
459 PRK06739 pyruvate kinase; Vali 93.0 3 6.5E-05 39.8 13.6 120 178-323 206-344 (352)
460 TIGR00222 panB 3-methyl-2-oxob 92.9 1.7 3.7E-05 39.7 11.3 43 194-267 161-203 (263)
461 PRK15440 L-rhamnonate dehydrat 92.8 1.2 2.7E-05 43.2 11.1 67 135-212 172-239 (394)
462 PRK09195 gatY tagatose-bisphos 92.8 3.6 7.7E-05 38.1 13.6 81 118-218 27-107 (284)
463 PRK12737 gatY tagatose-bisphos 92.8 3.7 8E-05 38.0 13.7 132 115-288 24-175 (284)
464 cd02933 OYE_like_FMN Old yello 92.8 3.5 7.6E-05 39.2 13.9 155 31-215 141-314 (338)
465 TIGR03249 KdgD 5-dehydro-4-deo 92.7 6.3 0.00014 36.5 15.4 85 120-219 26-110 (296)
466 TIGR03849 arch_ComA phosphosul 92.7 2.8 6.1E-05 37.6 12.2 140 42-217 14-156 (237)
467 PRK08610 fructose-bisphosphate 92.7 6 0.00013 36.7 14.8 79 195-292 158-237 (286)
468 PRK05198 2-dehydro-3-deoxyphos 92.6 0.69 1.5E-05 42.0 8.3 128 180-324 9-143 (264)
469 KOG0623|consensus 92.6 0.28 6E-06 45.9 5.8 94 195-315 443-537 (541)
470 COG2513 PrpB PEP phosphonomuta 92.5 8.7 0.00019 35.4 16.5 178 68-292 52-238 (289)
471 TIGR02313 HpaI-NOT-DapA 2,4-di 92.4 6.8 0.00015 36.4 15.1 87 119-219 20-106 (294)
472 PRK12738 kbaY tagatose-bisphos 92.4 5.2 0.00011 37.1 14.1 133 115-288 24-175 (286)
473 PRK12457 2-dehydro-3-deoxyphos 92.4 0.73 1.6E-05 42.2 8.2 103 180-302 15-126 (281)
474 PRK07084 fructose-bisphosphate 92.4 9.8 0.00021 35.8 16.6 82 195-292 166-272 (321)
475 TIGR00693 thiE thiamine-phosph 92.4 2.3 5.1E-05 36.6 11.3 101 135-291 26-126 (196)
476 cd00954 NAL N-Acetylneuraminic 92.4 6.7 0.00015 36.2 15.0 87 119-219 20-107 (288)
477 TIGR00674 dapA dihydrodipicoli 92.3 5.1 0.00011 36.9 14.0 86 120-219 19-104 (285)
478 PRK04147 N-acetylneuraminate l 92.2 3 6.6E-05 38.6 12.5 87 119-219 23-110 (293)
479 PRK15452 putative protease; Pr 92.2 4.9 0.00011 39.6 14.4 82 178-291 58-144 (443)
480 PRK07455 keto-hydroxyglutarate 92.1 1.5 3.2E-05 38.0 9.7 80 181-289 13-92 (187)
481 PLN02623 pyruvate kinase 92.1 7.4 0.00016 39.6 15.7 148 118-309 277-443 (581)
482 PRK00043 thiE thiamine-phospha 92.1 2.5 5.5E-05 36.7 11.3 23 267-289 110-132 (212)
483 PLN02460 indole-3-glycerol-pho 92.1 1.3 2.9E-05 41.8 9.8 74 194-292 140-214 (338)
484 PRK12857 fructose-1,6-bisphosp 92.1 5.6 0.00012 36.8 13.8 133 115-288 24-175 (284)
485 PRK13396 3-deoxy-7-phosphohept 92.0 0.87 1.9E-05 43.4 8.7 114 191-324 113-227 (352)
486 PF00701 DHDPS: Dihydrodipicol 92.0 3.7 8E-05 37.9 12.9 86 120-219 22-107 (289)
487 PRK08227 autoinducer 2 aldolas 91.9 7.1 0.00015 35.8 14.2 36 178-215 191-226 (264)
488 PRK11197 lldD L-lactate dehydr 91.9 2.4 5.2E-05 40.9 11.7 41 245-288 233-273 (381)
489 TIGR02321 Pphn_pyruv_hyd phosp 91.8 4.7 0.0001 37.4 13.1 129 160-307 60-203 (290)
490 PRK09195 gatY tagatose-bisphos 91.8 11 0.00023 35.0 17.6 79 195-292 157-236 (284)
491 TIGR00259 thylakoid_BtpA membr 91.8 8.2 0.00018 35.2 14.3 82 119-214 24-108 (257)
492 PRK06806 fructose-bisphosphate 91.7 6.3 0.00014 36.4 13.8 133 118-291 27-178 (281)
493 cd00408 DHDPS-like Dihydrodipi 91.7 10 0.00022 34.6 22.7 182 55-303 31-214 (281)
494 TIGR03128 RuMP_HxlA 3-hexulose 91.7 3.3 7.2E-05 36.0 11.6 122 122-291 11-136 (206)
495 PLN02591 tryptophan synthase 91.7 4.6 9.9E-05 36.7 12.6 172 5-218 14-221 (250)
496 PRK06512 thiamine-phosphate py 91.5 1.9 4.2E-05 38.3 9.9 87 158-290 54-140 (221)
497 COG0284 PyrF Orotidine-5'-phos 91.4 9.2 0.0002 34.5 14.2 25 267-294 196-220 (240)
498 TIGR01769 GGGP geranylgeranylg 91.4 1.1 2.4E-05 39.4 8.0 101 183-314 2-102 (205)
499 PF00215 OMPdecase: Orotidine 91.4 5.1 0.00011 35.5 12.6 183 43-293 13-215 (226)
500 PRK02714 O-succinylbenzoate sy 91.3 7.3 0.00016 36.6 14.2 111 135-288 133-247 (320)
No 1
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.1e-44 Score=327.54 Aligned_cols=245 Identities=31% Similarity=0.500 Sum_probs=205.1
Q ss_pred ceEEec--cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccch--hHHHHHHHHHHHHh
Q psy5880 57 HYFVVN--VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDI--ADVVLDSVKGILKF 132 (328)
Q Consensus 57 ~~v~~n--~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~--~~~i~~~~~~a~~~ 132 (328)
.|+++- -+.-|..|+.+.+. .++++.+.....+ .+ +.+++++.|..+ .+.+.+++..++++
T Consensus 57 R~~~l~~~~~~iN~mG~~N~G~----~~~~~~l~~~~~~------~~-----~~~~~i~~~~~~~~~~~~~d~~~~~~~~ 121 (310)
T COG0167 57 RLFRLPEDEGLINRMGFNNPGA----DAFLEELKLAKYE------GK-----PIGVNIGKNKGGPSEEAWADYARLLEEA 121 (310)
T ss_pred eEEEecCcccHHHhcCCCchhH----HHHHHHHHhhhhc------cC-----CcCcceEEecCCCcHHHHHHHHHHHHhc
Confidence 444443 44556667666553 4444444433321 11 345556665544 68899999999999
Q ss_pred cccccEEEEccCCCCCcchhhhh-hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccE
Q psy5880 133 GDVAHYFVVNVSSPNTANLRKLQ-AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDG 211 (328)
Q Consensus 133 ~~~~d~ieiN~scPn~~g~~~~~-~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~ 211 (328)
++ +|++|+|+||||+++.+..+ +++.+.+++++|++. .++||+|||+| +.+++.++|+.+ .++|+|+
T Consensus 122 ~~-ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~-------~~~Pv~vKl~P--~~~di~~iA~~~--~~~g~Dg 189 (310)
T COG0167 122 GD-ADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA-------TKVPVFVKLAP--NITDIDEIAKAA--EEAGADG 189 (310)
T ss_pred CC-CCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhc-------ccCceEEEeCC--CHHHHHHHHHHH--HHcCCcE
Confidence 88 99999999999999988877 899999999999988 67999999999 455799999999 9999999
Q ss_pred EEEecCCccchh----hhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeee
Q psy5880 212 LIVSNTTVDRYE----YLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287 (328)
Q Consensus 212 i~~~n~~~~~~~----~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~v 287 (328)
|+++||+..+.. ...|...+..||+||++++|.++++++++++.++.++|||++|||.|++||.+++++||++|||
T Consensus 190 l~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv 269 (310)
T COG0167 190 LIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQV 269 (310)
T ss_pred EEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchhee
Confidence 999999875432 2245667889999999999999999999999998889999999999999999999999999999
Q ss_pred hhHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHHhcccccC
Q psy5880 288 YTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHKS 328 (328)
Q Consensus 288 g~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~G~~~~~ 328 (328)
||+++++||.++++|.++|..||+++||+|++|++|.+++.
T Consensus 270 ~Tal~~~Gp~i~~~I~~~l~~~l~~~g~~si~d~iG~~~~~ 310 (310)
T COG0167 270 GTALIYKGPGIVKEIIKGLARWLEEKGFESIQDIIGSALRN 310 (310)
T ss_pred eeeeeeeCchHHHHHHHHHHHHHHHcCCCCHHHHhchhccC
Confidence 99999999999999999999999999999999999998763
No 2
>PLN02826 dihydroorotate dehydrogenase
Probab=100.00 E-value=1.4e-41 Score=324.90 Aligned_cols=219 Identities=50% Similarity=0.829 Sum_probs=194.5
Q ss_pred cCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcC--CCCCCEEE
Q psy5880 107 APDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAV--KPLPPILV 184 (328)
Q Consensus 107 ~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~--~~~~Pv~v 184 (328)
+..+|+++|+.+++.++||++.++++.+++|++|+|+||||+++.+.+++++.+.+++++|+++++.+.. ..++||+|
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~v 267 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLV 267 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence 4677888888666779999999999998999999999999999989889999999999999877543211 13689999
Q ss_pred EeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhh-ccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEE
Q psy5880 185 KIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYL-DARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPII 263 (328)
Q Consensus 185 Kl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~-~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvi 263 (328)
|++|+++.+++.++++.+ .++|+|||+++||+.+++... ......+.||+||+++++.++++++++++.+++++|||
T Consensus 268 KlaPdl~~~di~~ia~~a--~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipII 345 (409)
T PLN02826 268 KIAPDLSKEDLEDIAAVA--LALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLV 345 (409)
T ss_pred ecCCCCCHHHHHHHHHHH--HHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEE
Confidence 999999988999999999 999999999999998765311 12233467999999999999999999999997679999
Q ss_pred EecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHHhccccc
Q psy5880 264 GVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327 (328)
Q Consensus 264 a~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~G~~~~ 327 (328)
++|||.|++|+.++|++||++||+||+++++||.++++|+++|.+||+++||++++|++|.+++
T Consensus 346 gvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~eL~~~l~~~G~~si~e~iG~~~~ 409 (409)
T PLN02826 346 GCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPALIPRIKAELAACLERDGFKSIQEAVGADHR 409 (409)
T ss_pred EECCCCCHHHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHHHHHHHHHHcCCCCHHHHhCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998775
No 3
>KOG1436|consensus
Probab=100.00 E-value=6.9e-40 Score=292.21 Aligned_cols=259 Identities=49% Similarity=0.748 Sum_probs=222.5
Q ss_pred cceEEec--cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhc
Q psy5880 56 AHYFVVN--VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFG 133 (328)
Q Consensus 56 ~~~v~~n--~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~ 133 (328)
..||.+. .++.|..|+.+.+....+++ +.+.+.. ..++-.. ..++|++.|+.+.+.+.||++.++..+
T Consensus 137 PRvfrl~ed~~vINryGfns~Gi~~vl~r----l~~~r~~----~~~e~~~--~lGVnlgknk~s~d~~~dy~~gV~~~g 206 (398)
T KOG1436|consen 137 PRVFRLPEDLAVINRYGFNSEGIDAVLQR----LRAKRQA----KYPEAPA--KLGVNLGKNKTSEDAILDYVEGVRVFG 206 (398)
T ss_pred CceEecccccchhhccCCCcccHHHHHHH----HHHHHHh----cCCCccc--cceeeeccccCCcchHHHHHHHhhhcc
Confidence 4676666 78888888887765444444 4332221 1122111 257899999999999999999999999
Q ss_pred ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEE
Q psy5880 134 DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLI 213 (328)
Q Consensus 134 ~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~ 213 (328)
+++|+++||+|||||+|+|+++....+.+++..|..++..+....+.|+++|+.|++..+++.+++..+ .+..+|+++
T Consensus 207 ~~adylviNvSsPNtpGlr~lq~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~--kk~~idg~I 284 (398)
T KOG1436|consen 207 PFADYLVINVSSPNTPGLRSLQKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVV--KKLNIDGLI 284 (398)
T ss_pred cccceEEEeccCCCCcchhhhhhHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHHH--HHhCcccee
Confidence 999999999999999999999998888888888888876554445669999999999999999999999 899999999
Q ss_pred EecCCccch-hhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 214 VSNTTVDRY-EYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 214 ~~n~~~~~~-~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
++||+.+++ +........+.||+||++++|.++++++.+++.++++||||++|||.|++||.+.+++||++||++|++.
T Consensus 285 vsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~ 364 (398)
T KOG1436|consen 285 VSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALV 364 (398)
T ss_pred ecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHh
Confidence 999998885 3455566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchHHHHHHHHHHHHHHHhCCCCHHHHhcccc
Q psy5880 293 YHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAH 326 (328)
Q Consensus 293 ~~gp~~~~~i~~~l~~~m~~~g~~si~e~~G~~~ 326 (328)
|+||.++.+|++++...|+++||.+++|++|+.+
T Consensus 365 yeGp~i~~kIk~El~~ll~~kG~t~v~d~iG~~~ 398 (398)
T KOG1436|consen 365 YEGPAIIEKIKRELSALLKAKGFTSVDDAIGKDH 398 (398)
T ss_pred hcCchhHHHHHHHHHHHHHhcCCCcHHHhccCCC
Confidence 9999999999999999999999999999999864
No 4
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=100.00 E-value=1.2e-39 Score=308.74 Aligned_cols=238 Identities=23% Similarity=0.352 Sum_probs=188.6
Q ss_pred CCcCccCCC--chHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccC
Q psy5880 67 NTANLRKLQ--AKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVS 144 (328)
Q Consensus 67 N~~gl~~~~--~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~s 144 (328)
|..|+.+.+ ....++++++.+.+...+. ...|+++.+.-. .+.+++.++++.++.++ +|+||+|+|
T Consensus 82 n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~---~~~pvIaSi~~~-------~s~~~~~~~a~~~e~~G--aD~iELNiS 149 (385)
T PLN02495 82 RVIGWQNIELISDRPFETMLAEFKQLKEEY---PDRILIASIMEE-------YNKDAWEEIIERVEETG--VDALEINFS 149 (385)
T ss_pred ccccccCcccccccCHHHHHHHHHHHHhhC---CCCcEEEEccCC-------CCHHHHHHHHHHHHhcC--CCEEEEECC
Confidence 556665543 1113555555554432211 135777766321 13566777777776655 999999999
Q ss_pred CCCCcchhh-----hhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCc
Q psy5880 145 SPNTANLRK-----LQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 145 cPn~~g~~~-----~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~ 219 (328)
|||+++.+. .++++.+.+++++|++. .++||+|||+|+++ ++..+++.+ .++|+|+|+++||+.
T Consensus 150 CPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-------~~iPv~vKLsPn~t--~i~~ia~aa--~~~Gadgi~liNT~~ 218 (385)
T PLN02495 150 CPHGMPERKMGAAVGQDCDLLEEVCGWINAK-------ATVPVWAKMTPNIT--DITQPARVA--LKSGCEGVAAINTIM 218 (385)
T ss_pred CCCCCCcCccchhhccCHHHHHHHHHHHHHh-------hcCceEEEeCCChh--hHHHHHHHH--HHhCCCEEEEecccC
Confidence 999864443 47889999999999887 57999999999887 488999999 999999999999997
Q ss_pred cch----hhhcccc----ccccCCCCCCcCchHHHHHHHHHHHHcC----CCccEEEecCCCCHHHHHHHHHhccCeeee
Q psy5880 220 DRY----EYLDARY----KEETGGLSGEPLRNKSTELISEMYKLTK----GKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287 (328)
Q Consensus 220 ~~~----~~~~~~~----~~~~gg~sg~~~~~~~l~~v~~i~~~~~----~~ipvia~GGI~s~~da~~~l~~GAd~V~v 287 (328)
+.. +...|.. ....||+||++++|.++..++++++.++ .++|||++|||.|++||.++|.+||++|||
T Consensus 219 ~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv 298 (385)
T PLN02495 219 SVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQV 298 (385)
T ss_pred cccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeE
Confidence 532 1223322 2467999999999999999999988863 249999999999999999999999999999
Q ss_pred hhHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHHhccccc
Q psy5880 288 YTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327 (328)
Q Consensus 288 g~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~G~~~~ 327 (328)
||+++++||.++++++++|++||+++||+|++|++|.++.
T Consensus 299 ~Ta~~~~Gp~vi~~i~~~L~~~m~~~G~~si~e~~G~~~~ 338 (385)
T PLN02495 299 CTGVMMHGYPLVKNLCAELQDFMKKHNFSSIEDFRGASLP 338 (385)
T ss_pred eeeeeecCcHHHHHHHHHHHHHHHHcCCCCHHHHhCcCCc
Confidence 9999999999999999999999999999999999998875
No 5
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=100.00 E-value=1.2e-38 Score=296.94 Aligned_cols=244 Identities=24% Similarity=0.345 Sum_probs=186.4
Q ss_pred ceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccc
Q psy5880 57 HYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVA 136 (328)
Q Consensus 57 ~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~ 136 (328)
.++....+..|..|+.+.+-...++++. ..++. . ...|+++.+. +. +.+++.++++.++.++ ++
T Consensus 57 r~~~~~~~~~N~~Gl~n~g~~~~~~~i~-~~~~~---~---~~~pvI~Si~-G~-------~~~~~~~~a~~~~~~g-~a 120 (310)
T PRK02506 57 RYADTPLGSINSMGLPNLGFDYYLDYVL-ELQKK---G---PNKPHFLSVV-GL-------SPEETHTILKKIQASD-FN 120 (310)
T ss_pred eEEECcchhhccCCCCCcCHHHHHHHHH-HHHhh---c---CCCCEEEEEE-eC-------cHHHHHHHHHHHhhcC-CC
Confidence 4555555677888988876444444322 22211 1 1257666542 11 2334445544443321 38
Q ss_pred cEEEEccCCCCCcchhhh-hhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 137 HYFVVNVSSPNTANLRKL-QAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 137 d~ieiN~scPn~~g~~~~-~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
|+||+|+||||+++.+.. .+++.+.+++++|++. .++||+|||+|+++..++.+++..+ .+.|+++|..+
T Consensus 121 d~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~-------~~~Pv~vKlsp~~~~~~~a~~~~~~--~~~g~~~i~~~ 191 (310)
T PRK02506 121 GLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTY-------FTKPLGVKLPPYFDIVHFDQAAAIF--NKFPLAFVNCI 191 (310)
T ss_pred CEEEEECCCCCCCCccccccCHHHHHHHHHHHHHh-------cCCccEEecCCCCCHHHHHHHHHHh--CcCceEEEEEe
Confidence 999999999998765443 3578899999999987 6789999999998776677777777 78899999999
Q ss_pred cCCc-cc-h--hhhcccc--ccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehh
Q psy5880 216 NTTV-DR-Y--EYLDARY--KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 216 n~~~-~~-~--~~~~~~~--~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~ 289 (328)
||.. ++ . +...+.. ....||+||++++|.++++++++++.++.++|||++|||+|++|+.+++++||++||+||
T Consensus 192 nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~t 271 (310)
T PRK02506 192 NSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGT 271 (310)
T ss_pred ccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhH
Confidence 9754 11 1 1222322 456799999999999999999999998666999999999999999999999999999999
Q ss_pred HHhhcCchHHHHHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 290 SFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 290 a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
+++++||.++.+++++|++||+++||+|++|++|.+
T Consensus 272 a~~~~gp~~~~~i~~~L~~~l~~~g~~si~e~~G~~ 307 (310)
T PRK02506 272 ALHKEGPAVFERLTKELKAIMAEKGYQSLEDFRGKL 307 (310)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhCCCCHHHHhChh
Confidence 999889999999999999999999999999999954
No 6
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=100.00 E-value=1.8e-37 Score=288.93 Aligned_cols=234 Identities=28% Similarity=0.382 Sum_probs=187.1
Q ss_pred eccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcc-c-ccE
Q psy5880 61 VNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGD-V-AHY 138 (328)
Q Consensus 61 ~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~-~d~ 138 (328)
...+..|..|+.+.+-...++.+....++. ..|+++.+. .+ ..++|+++++++.+ + +|+
T Consensus 61 ~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~--------~~p~i~si~------g~-----~~~~~~~~a~~~~~aG~~D~ 121 (301)
T PRK07259 61 TPGGMLNAIGLQNPGVDAFIEEELPWLEEF--------DTPIIANVA------GS-----TEEEYAEVAEKLSKAPNVDA 121 (301)
T ss_pred cCCceeecCCCCCcCHHHHHHHHHHHHhcc--------CCcEEEEec------cC-----CHHHHHHHHHHHhccCCcCE
Confidence 334455667777776444444443322111 256655443 11 36788888888877 5 999
Q ss_pred EEEccCCCCCcc--hhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEec
Q psy5880 139 FVVNVSSPNTAN--LRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 139 ieiN~scPn~~g--~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
||||++|||+.+ ....++++++.+++++|++. .++||+||++++.+ ++.++++.+ +++|+|+|+++|
T Consensus 122 iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~-------~~~pv~vKl~~~~~--~~~~~a~~l--~~~G~d~i~~~n 190 (301)
T PRK07259 122 IELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV-------VKVPVIVKLTPNVT--DIVEIAKAA--EEAGADGLSLIN 190 (301)
T ss_pred EEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-------cCCCEEEEcCCCch--hHHHHHHHH--HHcCCCEEEEEc
Confidence 999999999863 34567789999999999987 58999999998664 688999999 999999999999
Q ss_pred CCccch-h--hhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 217 TTVDRY-E--YLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 217 ~~~~~~-~--~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
|+.++. + ...+......||+||+++.|..+++++++++.++ +|||++|||+|++|+.+++++|||+||+||++++
T Consensus 191 t~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~--ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~ 268 (301)
T PRK07259 191 TLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVD--IPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY 268 (301)
T ss_pred cccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCC--CCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc
Confidence 886532 1 1122233456889999999999999999999986 9999999999999999999999999999999997
Q ss_pred cCchHHHHHHHHHHHHHHHhCCCCHHHHhccccc
Q psy5880 294 HGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327 (328)
Q Consensus 294 ~gp~~~~~i~~~l~~~m~~~g~~si~e~~G~~~~ 327 (328)
||+++++++++++.||+++||++++|++|.++|
T Consensus 269 -~P~~~~~i~~~l~~~~~~~g~~~i~~~~g~~~~ 301 (301)
T PRK07259 269 -DPYAFPKIIEGLEAYLDKYGIKSIEEIVGIAHK 301 (301)
T ss_pred -CcHHHHHHHHHHHHHHHHcCCCCHHHHhCcccC
Confidence 899999999999999999999999999998875
No 7
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=100.00 E-value=5.2e-36 Score=281.19 Aligned_cols=232 Identities=20% Similarity=0.256 Sum_probs=177.8
Q ss_pred cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEc
Q psy5880 63 VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVN 142 (328)
Q Consensus 63 ~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN 142 (328)
.+.-|..|+.+.+- +.+++.+.+.... ...|+++.+.. .+.+.+.++++.+++++ +|+||+|
T Consensus 71 ~~~in~~g~~n~g~----~~~~~~i~~~~~~----~~~pvi~si~g--------~~~~~~~~~a~~~~~~g--ad~iElN 132 (325)
T cd04739 71 LSYFPEYGRYNLGP----EEYLELIRRAKRA----VSIPVIASLNG--------VSAGGWVDYARQIEEAG--ADALELN 132 (325)
T ss_pred ccccccccccCcCH----HHHHHHHHHHHhc----cCCeEEEEeCC--------CCHHHHHHHHHHHHhcC--CCEEEEe
Confidence 33445556666543 3333333332211 12577665521 23456777777777766 9999999
Q ss_pred cCCCCC-cchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccc
Q psy5880 143 VSSPNT-ANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDR 221 (328)
Q Consensus 143 ~scPn~-~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~ 221 (328)
+|||+. ++.+..+.++.+.+++++|++. .++||+||++++++ ++.++++.+ +++|+|+|+++||+...
T Consensus 133 ~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-------~~iPv~vKl~p~~~--~~~~~a~~l--~~~Gadgi~~~nt~~~~ 201 (325)
T cd04739 133 IYALPTDPDISGAEVEQRYLDILRAVKSA-------VTIPVAVKLSPFFS--ALAHMAKQL--DAAGADGLVLFNRFYQP 201 (325)
T ss_pred CCCCCCCCCcccchHHHHHHHHHHHHHhc-------cCCCEEEEcCCCcc--CHHHHHHHH--HHcCCCeEEEEcCcCCC
Confidence 999664 3333333456788889888876 67999999999876 588999999 99999999999998653
Q ss_pred hhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHH
Q psy5880 222 YEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTR 301 (328)
Q Consensus 222 ~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~ 301 (328)
............+|+||++++|.++++++++++.++ +|||++|||+|++|+.++|++||++||+||+++++||.++.+
T Consensus 202 ~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~--ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~ 279 (325)
T cd04739 202 DIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVK--ASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGT 279 (325)
T ss_pred CccccccceecCCCcCCccchhHHHHHHHHHHcccC--CCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHH
Confidence 211111111123679999999999999999999886 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 302 IKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 302 i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
|+++|++||+++||+|++|++|.+
T Consensus 280 i~~~L~~~l~~~g~~~i~e~~G~~ 303 (325)
T cd04739 280 LLAGLEAWMEEHGYESVQQLRGSM 303 (325)
T ss_pred HHHHHHHHHHHcCCCCHHHHhccc
Confidence 999999999999999999999963
No 8
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=100.00 E-value=4.6e-36 Score=283.67 Aligned_cols=192 Identities=48% Similarity=0.733 Sum_probs=167.4
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
...++||++.++++.+++|+||+|+||||+++.+..++++.+.+++++|+++..... .++||+|||+++++.+++.++
T Consensus 153 ~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~--~~~PV~vKlsp~~~~~~~~~i 230 (344)
T PRK05286 153 EDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELH--GYVPLLVKIAPDLSDEELDDI 230 (344)
T ss_pred ccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccc--cCCceEEEeCCCCCHHHHHHH
Confidence 357899999999998889999999999999887778899999999999999842100 038999999999988889999
Q ss_pred HHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
++.+ .++|+|+|+++||+.++.....+......||+||+++++.++++++++++.+++++|||++|||+|++|+.+++
T Consensus 231 a~~l--~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l 308 (344)
T PRK05286 231 ADLA--LEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKI 308 (344)
T ss_pred HHHH--HHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHH
Confidence 9999 99999999999998653212222223457899999999999999999999985569999999999999999999
Q ss_pred HhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhC
Q psy5880 279 KAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEG 314 (328)
Q Consensus 279 ~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g 314 (328)
++|||+||+||+++++||+++++++++|++||+++|
T Consensus 309 ~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 309 RAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRRDG 344 (344)
T ss_pred HcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 999999999999998899999999999999999987
No 9
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=1.7e-35 Score=275.19 Aligned_cols=236 Identities=29% Similarity=0.402 Sum_probs=185.4
Q ss_pred ceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcc-c
Q psy5880 57 HYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGD-V 135 (328)
Q Consensus 57 ~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~ 135 (328)
.++....+..|..|+.+.+....++++....++ ...|+.+.+... ..++|+++++++.+ +
T Consensus 55 ~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~--------~~~p~ivsi~g~-----------~~~~~~~~a~~~~~~G 115 (296)
T cd04740 55 RVVETPGGMLNAIGLQNPGVEAFLEELLPWLRE--------FGTPVIASIAGS-----------TVEEFVEVAEKLADAG 115 (296)
T ss_pred eEEecCcceeeecCCCCcCHHHHHHHHHHHhhc--------CCCcEEEEEecC-----------CHHHHHHHHHHHHHcC
Confidence 344444556677788877654445544332221 125666554321 34666666666665 5
Q ss_pred ccEEEEccCCCCCcc--hhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEE
Q psy5880 136 AHYFVVNVSSPNTAN--LRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLI 213 (328)
Q Consensus 136 ~d~ieiN~scPn~~g--~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~ 213 (328)
+|+||+|++||++++ ....++++++.+++++|++. .++||++|++++.+ ++.++++.+ .++|+|+|+
T Consensus 116 ~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-------~~~Pv~vKl~~~~~--~~~~~a~~~--~~~G~d~i~ 184 (296)
T cd04740 116 ADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-------TDVPVIVKLTPNVT--DIVEIARAA--EEAGADGLT 184 (296)
T ss_pred CCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-------cCCCEEEEeCCCch--hHHHHHHHH--HHcCCCEEE
Confidence 999999999999863 22346789999999999986 58999999998765 588999999 999999999
Q ss_pred EecCCccch-h--hhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhH
Q psy5880 214 VSNTTVDRY-E--YLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 214 ~~n~~~~~~-~--~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a 290 (328)
++|++.++. + ...|......||+||++++|.++++++++++.++ +|||++|||++++|+.+++++|||+||+||+
T Consensus 185 ~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~--ipii~~GGI~~~~da~~~l~~GAd~V~igra 262 (296)
T cd04740 185 LINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVE--IPIIGVGGIASGEDALEFLMAGASAVQVGTA 262 (296)
T ss_pred EECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcC--CCEEEECCCCCHHHHHHHHHcCCCEEEEchh
Confidence 999986532 1 1122233455889999999999999999999986 9999999999999999999999999999999
Q ss_pred HhhcCchHHHHHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 291 FVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 291 ~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
+++ ||++++++++++++||+++||+|++|++|.+
T Consensus 263 ~l~-~p~~~~~i~~~l~~~~~~~g~~~~~~~~g~~ 296 (296)
T cd04740 263 NFV-DPEAFKEIIEGLEAYLDEEGIKSIEELVGLA 296 (296)
T ss_pred hhc-ChHHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 997 8999999999999999999999999999964
No 10
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=100.00 E-value=2.4e-35 Score=274.57 Aligned_cols=233 Identities=25% Similarity=0.377 Sum_probs=180.5
Q ss_pred CCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEcc
Q psy5880 64 SSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNV 143 (328)
Q Consensus 64 sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~ 143 (328)
+.-|..|+.+.+....++.+....++ ...|+++.+.- .+.+.+.+.++.++.+..++|+||+|+
T Consensus 63 ~~~n~~gl~~~g~~~~~~~~~~~~~~--------~~~pl~~qi~g--------~~~~~~~~~a~~~~~~~~~~d~ielN~ 126 (300)
T TIGR01037 63 GMLNAIGLQNPGVEAFLEELKPVREE--------FPTPLIASVYG--------SSVEEFAEVAEKLEKAPPYVDAYELNL 126 (300)
T ss_pred HHhhhccCCCcCHHHHHHHHHHHhcc--------CCCcEEEEeec--------CCHHHHHHHHHHHHhccCccCEEEEEC
Confidence 45567788877654544444332211 12466655531 123344444444444334589999999
Q ss_pred CCCCCcc--hhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccc
Q psy5880 144 SSPNTAN--LRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDR 221 (328)
Q Consensus 144 scPn~~g--~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~ 221 (328)
+|||+++ ....++++.+.+++++|++. .++||+||++++.+ +..++++.+ +++|+|+|+++||+.++
T Consensus 127 ~cP~~~~~g~~l~~~~~~~~eiv~~vr~~-------~~~pv~vKi~~~~~--~~~~~a~~l--~~~G~d~i~v~nt~~~~ 195 (300)
T TIGR01037 127 SCPHVKGGGIAIGQDPELSADVVKAVKDK-------TDVPVFAKLSPNVT--DITEIAKAA--EEAGADGLTLINTLRGM 195 (300)
T ss_pred CCCCCCCCccccccCHHHHHHHHHHHHHh-------cCCCEEEECCCChh--hHHHHHHHH--HHcCCCEEEEEccCCcc
Confidence 9999864 23456789999999999987 57899999998654 578999999 99999999999987653
Q ss_pred hh---hhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchH
Q psy5880 222 YE---YLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPL 298 (328)
Q Consensus 222 ~~---~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~ 298 (328)
.. ...+......||++|++++|.++++++++++.++ +|||++|||.|++|+.+++++|||+||+||++++ +|++
T Consensus 196 ~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~--ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~-~p~~ 272 (300)
T TIGR01037 196 KIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVD--IPIIGVGGITSFEDALEFLMAGASAVQVGTAVYY-RGFA 272 (300)
T ss_pred ccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCC--CCEEEECCCCCHHHHHHHHHcCCCceeecHHHhc-CchH
Confidence 21 1122233456889999999999999999999987 9999999999999999999999999999999986 4899
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHhcccc
Q psy5880 299 VTRIKSELEELLQKEGYNSVSQAVGAAH 326 (328)
Q Consensus 299 ~~~i~~~l~~~m~~~g~~si~e~~G~~~ 326 (328)
++++++++.+||+++||+|++|++|.+|
T Consensus 273 ~~~i~~~l~~~~~~~g~~~~~e~~g~~~ 300 (300)
T TIGR01037 273 FKKIIEGLIAFLKAEGFTSIEELIGIAH 300 (300)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHhCcCC
Confidence 9999999999999999999999999875
No 11
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=100.00 E-value=2.4e-35 Score=277.18 Aligned_cols=186 Identities=50% Similarity=0.780 Sum_probs=161.2
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
...++||++.++++.+++|++|+|+||||+++.+..++++.+.+++++|++..+.+.+..++||++||+|+++.+++.++
T Consensus 150 ~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~i 229 (335)
T TIGR01036 150 EDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDI 229 (335)
T ss_pred ccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHH
Confidence 45789999999999888999999999999988778889999999999999885422211248999999999998889999
Q ss_pred HHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
++.+ .++|+|+|+++||+.++.....+......||+||++++|.++++++++++.+++++|||++|||+|++|+.+++
T Consensus 230 a~~~--~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l 307 (335)
T TIGR01036 230 ADSL--VELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKI 307 (335)
T ss_pred HHHH--HHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHH
Confidence 9999 99999999999998764321112223467999999999999999999999987679999999999999999999
Q ss_pred HhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 279 KAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 279 ~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
++||++||+||+++++||+|+.+++++|
T Consensus 308 ~aGA~~Vqv~ta~~~~Gp~~~~~i~~~L 335 (335)
T TIGR01036 308 RAGASLLQIYSGFIYWGPPLVKEIVKEI 335 (335)
T ss_pred HcCCcHHHhhHHHHHhCchHHHHHHhhC
Confidence 9999999999999988999999998764
No 12
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=1.7e-35 Score=274.20 Aligned_cols=228 Identities=24% Similarity=0.316 Sum_probs=173.4
Q ss_pred ceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcc--
Q psy5880 57 HYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGD-- 134 (328)
Q Consensus 57 ~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-- 134 (328)
.++....+..|..|+.+.+-...++ .+.+...... +...|+++.+... .+++++.++++.+
T Consensus 54 r~~~~~~~~~N~~G~~n~g~~~~~~----~i~~~~~~~~-~~~~pvivsi~g~------------~~~~~~~~~~~~~~~ 116 (294)
T cd04741 54 RYYAFPLGSINSLGLPNLGLDYYLE----YIRTISDGLP-GSAKPFFISVTGS------------AEDIAAMYKKIAAHQ 116 (294)
T ss_pred cEEecCccccccccCCCcCHHHHHH----HHHHHhhhcc-ccCCeEEEECCCC------------HHHHHHHHHHHHhhc
Confidence 4555566677888888866333333 3332221110 1235766655321 2444444444432
Q ss_pred --cccEEEEccCCCCCcchhh-hhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccC--Cc
Q psy5880 135 --VAHYFVVNVSSPNTANLRK-LQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKC--KV 209 (328)
Q Consensus 135 --~~d~ieiN~scPn~~g~~~-~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~--G~ 209 (328)
++|+||+|+||||+.+.+. .++++.+.+++++|++. .++||+|||+++++.+++.++++.+ .++ |+
T Consensus 117 ~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~-------~~iPv~vKl~p~~~~~~~~~~a~~l--~~~~~G~ 187 (294)
T cd04741 117 KQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAA-------YSIPVGVKTPPYTDPAQFDTLAEAL--NAFACPI 187 (294)
T ss_pred cccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCHHHHHHHHHHH--hccccCC
Confidence 5899999999999865543 34789999999999987 6799999999999877888999998 888 99
Q ss_pred cEEEEecCCccc--hh--hhcccc--ccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccC
Q psy5880 210 DGLIVSNTTVDR--YE--YLDARY--KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGAS 283 (328)
Q Consensus 210 d~i~~~n~~~~~--~~--~~~~~~--~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd 283 (328)
|+|+++||+... .+ ...+.. ....||+||++++|.++++++++++.+++++|||++|||.|++|+.+++++|||
T Consensus 188 ~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~ 267 (294)
T cd04741 188 SFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGAS 267 (294)
T ss_pred cEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 999999998431 11 122222 345789999999999999999999998656999999999999999999999999
Q ss_pred eeeehhHHhhcCchHHHHHHHHHHHHH
Q psy5880 284 LVQIYTSFVYHGPPLVTRIKSELEELL 310 (328)
Q Consensus 284 ~V~vg~a~l~~gp~~~~~i~~~l~~~m 310 (328)
+||+||+++++||+++++++++|++||
T Consensus 268 ~Vqv~ta~~~~gp~~~~~i~~~L~~~~ 294 (294)
T cd04741 268 AVQVGTALGKEGPKVFARIEKELEDIW 294 (294)
T ss_pred ceeEchhhhhcCchHHHHHHHHHHhhC
Confidence 999999999889999999999999986
No 13
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=100.00 E-value=2.3e-34 Score=279.53 Aligned_cols=195 Identities=22% Similarity=0.299 Sum_probs=167.8
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcch-----hhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChh
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANL-----RKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLD 193 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~-----~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~ 193 (328)
.+.+.++++.++.++ +|+||||+||||+... ...++++.+.+++++|++. .++||+|||+++.+
T Consensus 112 ~~~~~~~a~~~~~~g--~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-------~~~Pv~vKl~p~~~-- 180 (420)
T PRK08318 112 EEEWKEIAPLVEETG--ADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-------SRLPVIVKLTPNIT-- 180 (420)
T ss_pred HHHHHHHHHHHHhcC--CCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-------cCCcEEEEcCCCcc--
Confidence 466778888777765 9999999999995322 2347889999999999987 67999999999876
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchh--hh----cccc--ccccCCCCCCcCchHHHHHHHHHHHHcC-CCccEEE
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYE--YL----DARY--KEETGGLSGEPLRNKSTELISEMYKLTK-GKLPIIG 264 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~--~~----~~~~--~~~~gg~sg~~~~~~~l~~v~~i~~~~~-~~ipvia 264 (328)
++.++++.+ +++|+|+|+++||+.++.. .. .|.. ....||+||++++|.++++|+++++.++ .++||||
T Consensus 181 ~~~~~a~~~--~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig 258 (420)
T PRK08318 181 DIREPARAA--KRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISG 258 (420)
T ss_pred cHHHHHHHH--HHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEe
Confidence 378999999 9999999999999977421 11 2222 3467899999999999999999999873 2499999
Q ss_pred ecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHHhcccc
Q psy5880 265 VGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAH 326 (328)
Q Consensus 265 ~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~G~~~ 326 (328)
+|||.|++|+.++|++|||+|||||+++++||.+++++.++|+.||+++|+++++|++|..+
T Consensus 259 ~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~~si~e~iG~~~ 320 (420)
T PRK08318 259 IGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGFASLEDMVGLAV 320 (420)
T ss_pred ecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHcCcchHHHHhcccc
Confidence 99999999999999999999999999999899999999999999999999999999999755
No 14
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=100.00 E-value=9.5e-35 Score=269.93 Aligned_cols=183 Identities=32% Similarity=0.448 Sum_probs=150.9
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhh-hhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRK-LQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKD 197 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~-~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ 197 (328)
.+.+++|++.++++..++|++|+|+||||+++.+. .++++...++++.+++. .++||+|||+++++......
T Consensus 108 ~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~-------~~~Pv~vKL~p~~~~~~~~~ 180 (295)
T PF01180_consen 108 EEEIEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREA-------VDIPVFVKLSPNFTDIEPFA 180 (295)
T ss_dssp SGHHHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHH-------HSSEEEEEE-STSSCHHHHH
T ss_pred chhHHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhc-------cCCCEEEEecCCCCchHHHH
Confidence 45677888887777667999999999999975544 34567788888888876 58999999999988766677
Q ss_pred HHHHhccccCCccEEEEecCCccch----hhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTVDRY----EYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~~~~----~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++..+ .+.|+++|+++||+.... +...+......||+||++++|.++++++++++.++.++||||+|||+|++|
T Consensus 181 ~~~~~--~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~d 258 (295)
T PF01180_consen 181 IAAEL--AADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGED 258 (295)
T ss_dssp HHHHH--HTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHH
T ss_pred HHHHh--hccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHH
Confidence 77878 799999999999986533 122333344678999999999999999999999987899999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELL 310 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m 310 (328)
+.+++++||++||+||+++++||+++++|+++|++||
T Consensus 259 a~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~~L~~~l 295 (295)
T PF01180_consen 259 AIEFLMAGASAVQVCSALIYRGPGVIRRINRELEEWL 295 (295)
T ss_dssp HHHHHHHTESEEEESHHHHHHGTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHheechhhhhcCcHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999998
No 15
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=100.00 E-value=1.4e-33 Score=266.24 Aligned_cols=231 Identities=19% Similarity=0.239 Sum_probs=174.5
Q ss_pred CCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccC
Q psy5880 65 SPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVS 144 (328)
Q Consensus 65 spN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~s 144 (328)
.-|..|+.+.+..+. .+.+..+++.. ..|+++++... +.+.+.++++.++.++ +|+||+|++
T Consensus 75 ~~n~~gl~n~g~d~~-~~~i~~~~~~~-------~~pvi~sI~g~--------~~~e~~~~a~~~~~ag--ad~ielN~s 136 (334)
T PRK07565 75 YFPEPAKFYVGPEEY-LELIRRAKEAV-------DIPVIASLNGS--------SAGGWVDYARQIEQAG--ADALELNIY 136 (334)
T ss_pred hhhhhhccCcCHHHH-HHHHHHHHHhc-------CCcEEEEeccC--------CHHHHHHHHHHHHHcC--CCEEEEeCC
Confidence 345556666553333 33333333221 25777766331 2345666666666665 999999999
Q ss_pred CCCCc-chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchh
Q psy5880 145 SPNTA-NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYE 223 (328)
Q Consensus 145 cPn~~-g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~ 223 (328)
||+.. +......++.+.+++++|++. .++||++|++++++ ++.++++.+ +++|+|+|+++||+.+...
T Consensus 137 cpp~~~~~~g~~~~~~~~eil~~v~~~-------~~iPV~vKl~p~~~--~~~~~a~~l--~~~G~dgI~~~n~~~~~~~ 205 (334)
T PRK07565 137 YLPTDPDISGAEVEQRYLDILRAVKSA-------VSIPVAVKLSPYFS--NLANMAKRL--DAAGADGLVLFNRFYQPDI 205 (334)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHhc-------cCCcEEEEeCCCch--hHHHHHHHH--HHcCCCeEEEECCcCCCCc
Confidence 97753 222122335577888888876 67999999999765 478899999 9999999999999765321
Q ss_pred hhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 224 YLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 224 ~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
..........+|+||++++|.++++++++++.++ +|||++|||+|++|+.++|.+||++||+||+++++||.++++++
T Consensus 206 d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~--ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~ 283 (334)
T PRK07565 206 DLETLEVVPGLVLSTPAELRLPLRWIAILSGRVG--ADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTIL 283 (334)
T ss_pred ChhhcccccCCCCCCchhhhHHHHHHHHHHhhcC--CCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHH
Confidence 1111111123579999999999999999999886 99999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHhCCCCHHHHhcccc
Q psy5880 304 SELEELLQKEGYNSVSQAVGAAH 326 (328)
Q Consensus 304 ~~l~~~m~~~g~~si~e~~G~~~ 326 (328)
++|++||+++||+|++|++|.+.
T Consensus 284 ~~L~~~l~~~g~~~i~e~~g~~~ 306 (334)
T PRK07565 284 RGLEDWMERHGYESLQQFRGSMS 306 (334)
T ss_pred HHHHHHHHHcCCCCHHHHhcccc
Confidence 99999999999999999999653
No 16
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=100.00 E-value=4.2e-33 Score=262.00 Aligned_cols=222 Identities=53% Similarity=0.779 Sum_probs=175.7
Q ss_pred CCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccc--hhHHHHHHHHHHHHhcccccEEEEcc
Q psy5880 66 PNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKD--IADVVLDSVKGILKFGDVAHYFVVNV 143 (328)
Q Consensus 66 pN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~--~~~~i~~~~~~a~~~~~~~d~ieiN~ 143 (328)
-|..|+.+.+ ++.+++.+.+... ...|+++.+. .+.. ..+.+++|++.++++.+++|+||+|+
T Consensus 104 ~n~~g~~n~g----~~~~~~~l~~~~~-----~~~plivsi~------g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~ 168 (327)
T cd04738 104 INRMGFNNDG----ADAVAKRLKKRRP-----RGGPLGVNIG------KNKDTPLEDAVEDYVIGVRKLGPYADYLVVNV 168 (327)
T ss_pred eecCCCCCcc----HHHHHHHHHHhcc-----CCCeEEEEEe------CCCCCcccccHHHHHHHHHHHHhhCCEEEEEC
Confidence 3555666665 3444444443321 1356665543 2211 14568999999999887899999999
Q ss_pred CCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchh
Q psy5880 144 SSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYE 223 (328)
Q Consensus 144 scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~ 223 (328)
||||+++.+.+++++.+.+++++|++....++ .++||+||++++++.+++.++++.+ .++|+|+|+++||+.++..
T Consensus 169 scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~--~~~Pv~vKl~~~~~~~~~~~ia~~l--~~aGad~I~~~n~~~~~~~ 244 (327)
T cd04738 169 SSPNTPGLRDLQGKEALRELLTAVKEERNKLG--KKVPLLVKIAPDLSDEELEDIADVA--LEHGVDGIIATNTTISRPG 244 (327)
T ss_pred CCCCCCccccccCHHHHHHHHHHHHHHHhhcc--cCCCeEEEeCCCCCHHHHHHHHHHH--HHcCCcEEEEECCcccccc
Confidence 99999877778899999999999999842111 2489999999998877899999999 9999999999999875432
Q ss_pred hhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 224 YLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 224 ~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
...+......||+||+++++.++++++++++.+++++|||++|||+|++|+.+++.+|||+||+||+++++||+++++++
T Consensus 245 ~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~ 324 (327)
T cd04738 245 LLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKRIK 324 (327)
T ss_pred cccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHHHH
Confidence 22233445578999999999999999999999855599999999999999999999999999999999988999999998
Q ss_pred HHH
Q psy5880 304 SEL 306 (328)
Q Consensus 304 ~~l 306 (328)
++|
T Consensus 325 ~~l 327 (327)
T cd04738 325 REL 327 (327)
T ss_pred hcC
Confidence 764
No 17
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.98 E-value=2.1e-32 Score=254.40 Aligned_cols=173 Identities=24% Similarity=0.312 Sum_probs=144.1
Q ss_pred HHHHHHHHHhcc-cccEEEEccCCCCCcch-----hhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHH
Q psy5880 123 LDSVKGILKFGD-VAHYFVVNVSSPNTANL-----RKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKK 196 (328)
Q Consensus 123 ~~~~~~a~~~~~-~~d~ieiN~scPn~~g~-----~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~ 196 (328)
++|++.++.+.+ ++|+||+|++|||+.+. ...++++.+.+++++|++. .++||+|||+++.+ ++.
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-------~~~Pv~vKl~~~~~--~~~ 183 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA-------VKIPVIAKLTPNIT--DIR 183 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-------cCCCeEEECCCCch--hHH
Confidence 455555555544 59999999999998432 2346789999999999987 67999999999765 588
Q ss_pred HHHHHhccccCCccEEEEecCCccch----hhhcccc----ccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCC
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRY----EYLDARY----KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGV 268 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~----~~~~~~~----~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI 268 (328)
++++.+ +++|+|+|+++||+.++. +...+.. ....||+||++++|.++++++++++.+++++|||++|||
T Consensus 184 ~~a~~~--~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI 261 (299)
T cd02940 184 EIARAA--KEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGI 261 (299)
T ss_pred HHHHHH--HHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCC
Confidence 999999 999999999999987632 1112211 345789999999999999999999999445999999999
Q ss_pred CCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 269 FSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 269 ~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+|++|+.+++++|||+||+||+++++||.++.++.++|
T Consensus 262 ~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~i~~~l 299 (299)
T cd02940 262 ESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMCTGL 299 (299)
T ss_pred CCHHHHHHHHHcCCChheEceeecccCCcHHHHHhhhC
Confidence 99999999999999999999999999999999998764
No 18
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.97 E-value=6.9e-30 Score=236.72 Aligned_cols=216 Identities=29% Similarity=0.457 Sum_probs=161.4
Q ss_pred cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEc
Q psy5880 63 VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVN 142 (328)
Q Consensus 63 ~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN 142 (328)
.+.-|..|+.+.+-...++ .+.+..... ...|+.+.+... +.+.+.+.++.+..+ ++|+||+|
T Consensus 69 ~~~~n~~g~~~~g~~~~~~----~i~~~~~~~---~~~pvi~si~g~--------~~~~~~~~a~~~~~~--G~d~ielN 131 (289)
T cd02810 69 LGILNSFGLPNLGLDVWLQ----DIAKAKKEF---PGQPLIASVGGS--------SKEDYVELARKIERA--GAKALELN 131 (289)
T ss_pred ceEeecCCCCCcCHHHHHH----HHHHHHhcc---CCCeEEEEeccC--------CHHHHHHHHHHHHHh--CCCEEEEE
Confidence 4455677777765333333 333322110 135666554321 233444555555444 49999999
Q ss_pred cCCCCCcchhh-hhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccc
Q psy5880 143 VSSPNTANLRK-LQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDR 221 (328)
Q Consensus 143 ~scPn~~g~~~-~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~ 221 (328)
++|||+...+. .++++.+.+++++|++. .++||++|++++.+.+++.++++.+ .++|+|+|+++|++.+.
T Consensus 132 ~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-------~~~pv~vKl~~~~~~~~~~~~a~~l--~~~Gad~i~~~~~~~~~ 202 (289)
T cd02810 132 LSCPNVGGGRQLGQDPEAVANLLKAVKAA-------VDIPLLVKLSPYFDLEDIVELAKAA--ERAGADGLTAINTISGR 202 (289)
T ss_pred cCCCCCCCCcccccCHHHHHHHHHHHHHc-------cCCCEEEEeCCCCCHHHHHHHHHHH--HHcCCCEEEEEcccCcc
Confidence 99999864333 46788999999999986 5799999999999888899999999 99999999999987643
Q ss_pred hhh---hccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchH
Q psy5880 222 YEY---LDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPL 298 (328)
Q Consensus 222 ~~~---~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~ 298 (328)
... ..+......+|+||+++.+.++++++++++.++.++|||++|||+|++|+.+++++|||+||+||+++.+||++
T Consensus 203 ~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~ 282 (289)
T cd02810 203 VVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDV 282 (289)
T ss_pred ceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccH
Confidence 211 11222344678999999999999999999998434999999999999999999999999999999999878999
Q ss_pred HHHHHH
Q psy5880 299 VTRIKS 304 (328)
Q Consensus 299 ~~~i~~ 304 (328)
++++++
T Consensus 283 ~~~i~~ 288 (289)
T cd02810 283 IRKIKK 288 (289)
T ss_pred HHHHhc
Confidence 999875
No 19
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.94 E-value=1.5e-25 Score=211.14 Aligned_cols=252 Identities=20% Similarity=0.220 Sum_probs=189.1
Q ss_pred cCChhhHHHHHHHhHHHHHHHh----hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-C--
Q psy5880 30 MLSSFARMRAWVLQFWLLGILK----FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-K-- 97 (328)
Q Consensus 30 ~~~~~~~v~~~~l~~y~~~~~~----l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~-- 97 (328)
..+.++..+++.+++|..+++. ++.++.++..+ ...|+++|++++.+.+.|++++++||+++.++. | +
T Consensus 24 ~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~ 103 (327)
T cd02803 24 MATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQ 103 (327)
T ss_pred cccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcC
Confidence 3445678899999999999973 45667777777 678999999999999999999999999998832 2 1
Q ss_pred CC------C---cch------hcccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccC---------CCCCcchh
Q psy5880 98 PL------P---PIL------VKIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVS---------SPNTANLR 152 (328)
Q Consensus 98 ~~------~---Pv~------vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~s---------cPn~~g~~ 152 (328)
.. . |.. ...|..|+..+ ..+.+++|+++|+++.+ ++|+||||.. ||.+ +.|
T Consensus 104 ~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~e---i~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~-n~R 179 (327)
T cd02803 104 AQPNLTGGPPPAPSAIPSPGGGEPPREMTKEE---IEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYT-NKR 179 (327)
T ss_pred CCCcCCCCCccCCCCCCCCCCCCCCCcCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccc-cCC
Confidence 00 1 110 01233444332 25678999999999887 8999999965 7876 344
Q ss_pred hhhh-------hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC------CChhhHHHHHHHhccccCCccEEEEecCCc
Q psy5880 153 KLQA-------KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD------LSLDEKKDIADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 153 ~~~~-------~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~------~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++++ .+++.+++++|++++ + .++||++|+++. ++.++..++++.+ .++|+|+|+++++..
T Consensus 180 ~d~yGgs~enr~r~~~eii~avr~~~---g--~d~~i~vris~~~~~~~g~~~~e~~~la~~l--~~~G~d~i~vs~g~~ 252 (327)
T cd02803 180 TDEYGGSLENRARFLLEIVAAVREAV---G--PDFPVGVRLSADDFVPGGLTLEEAIEIAKAL--EEAGVDALHVSGGSY 252 (327)
T ss_pred CcccCCCHHHHHHHHHHHHHHHHHHc---C--CCceEEEEechhccCCCCCCHHHHHHHHHHH--HHcCCCEEEeCCCCC
Confidence 4433 367889999998873 2 478999999975 4567889999999 999999999998764
Q ss_pred cchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh-ccCeeeehhHHhhcCchH
Q psy5880 220 DRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA-GASLVQIYTSFVYHGPPL 298 (328)
Q Consensus 220 ~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~-GAd~V~vg~a~l~~gp~~ 298 (328)
..+... .. .+....+..++.++.+++.++ +||+++|||+|++++.++++. |||+|++||+++. +|+|
T Consensus 253 ~~~~~~-------~~--~~~~~~~~~~~~~~~ir~~~~--iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la-dP~l 320 (327)
T cd02803 253 ESPPPI-------IP--PPYVPEGYFLELAEKIKKAVK--IPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA-DPDL 320 (327)
T ss_pred cccccc-------cC--CCCCCcchhHHHHHHHHHHCC--CCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh-CccH
Confidence 311000 00 001112345788899999987 999999999999999999998 6999999999986 5999
Q ss_pred HHHHHH
Q psy5880 299 VTRIKS 304 (328)
Q Consensus 299 ~~~i~~ 304 (328)
++++.+
T Consensus 321 ~~k~~~ 326 (327)
T cd02803 321 PNKARE 326 (327)
T ss_pred HHHHhc
Confidence 999864
No 20
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.94 E-value=1e-25 Score=212.76 Aligned_cols=257 Identities=21% Similarity=0.234 Sum_probs=194.4
Q ss_pred CCCCcCChhhHHHHHHHhHHHHHHHh----hcCccceEEecc-CCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C
Q psy5880 26 PTHNMLSSFARMRAWVLQFWLLGILK----FGDVAHYFVVNV-SSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L 96 (328)
Q Consensus 26 ~~~~~~~~~~~v~~~~l~~y~~~~~~----l~~~~~~v~~n~-sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~ 96 (328)
-..+.++.++.++++++++|.++++. ++..+.++.... .+|+++|++++.+.+.|++++++||+++.++. |
T Consensus 26 m~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~~vt~avH~~G~~i~iQL~H 105 (363)
T COG1902 26 MTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLKRLTEAVHAHGAKIFIQLWH 105 (363)
T ss_pred cccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHHHHHHHHHhcCCeEEEEecc
Confidence 34445555778999999999999994 445555555553 79999999999999999999999999999843 2
Q ss_pred -C-----CC-------Ccchh-------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEc---------cCCC
Q psy5880 97 -K-----PL-------PPILV-------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVN---------VSSP 146 (328)
Q Consensus 97 -~-----~~-------~Pv~v-------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN---------~scP 146 (328)
+ .. .|..+ ..|..|+..+ ..+.+++|+++|+++.+ |||+|||| |.+|
T Consensus 106 ~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~e---I~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp 182 (363)
T COG1902 106 AGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEE---IEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSP 182 (363)
T ss_pred CcccccccccCCCcccCCCccccccCCCCCCccCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCC
Confidence 1 00 11111 1233444332 35789999999999998 89999997 7778
Q ss_pred CCcchhhhhhh-------HHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC-------CChhhHHHHHHHhccccCC-ccE
Q psy5880 147 NTANLRKLQAK-------DQLKHLLKTVVETRNQLAVKPLPPILVKIAPD-------LSLDEKKDIADVVLDSKCK-VDG 211 (328)
Q Consensus 147 n~~g~~~~~~~-------~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~-------~~~~~~~~~a~~l~~~~~G-~d~ 211 (328)
.+ |.|+++++ +++.|++++||+++. .++||++||++. .+.++..++++.| .+.| +|+
T Consensus 183 ~t-N~RtD~YGGSlENR~Rf~~EVv~aVr~~vg-----~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L--~~~G~~d~ 254 (363)
T COG1902 183 LT-NKRTDEYGGSLENRARFLLEVVDAVREAVG-----ADFPVGVRLSPDDFFDGGGLTIEEAVELAKAL--EEAGLVDY 254 (363)
T ss_pred cc-CCCCCccCCcHHHHHHHHHHHHHHHHHHhC-----CCceEEEEECccccCCCCCCCHHHHHHHHHHH--HhcCCccE
Confidence 87 56665543 689999999999853 578999999984 3456889999999 9999 799
Q ss_pred EEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhH
Q psy5880 212 LIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTS 290 (328)
Q Consensus 212 i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a 290 (328)
|++++....... . -...+ ....+.+...++..+. +|||++|+|++++.+.++++.| ||+|.+||+
T Consensus 255 i~vs~~~~~~~~----~-----~~~~~---~~~~~~~a~~i~~~~~--~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~ 320 (363)
T COG1902 255 IHVSEGGYERGG----T-----ITVSG---PGYQVEFAARIKKAVR--IPVIAVGGINDPEQAEEILASGRADLVAMGRP 320 (363)
T ss_pred EEeecccccCCC----C-----ccccc---cchhHHHHHHHHHhcC--CCEEEeCCCCCHHHHHHHHHcCCCCEEEechh
Confidence 999875432100 0 00111 1133566777888877 9999999999999999999998 999999999
Q ss_pred HhhcCchHHHHHHHHHHH
Q psy5880 291 FVYHGPPLVTRIKSELEE 308 (328)
Q Consensus 291 ~l~~gp~~~~~i~~~l~~ 308 (328)
++. +|+|+.+++++...
T Consensus 321 ~la-dP~~~~k~~~g~~~ 337 (363)
T COG1902 321 FLA-DPDLVLKAAEGREL 337 (363)
T ss_pred hhc-CccHHHHHHcCCCc
Confidence 996 59999999988764
No 21
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.94 E-value=1.9e-25 Score=210.35 Aligned_cols=246 Identities=17% Similarity=0.154 Sum_probs=186.0
Q ss_pred hhhHHHHHHHhHHHHHHHh----hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-CCC---
Q psy5880 33 SFARMRAWVLQFWLLGILK----FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-KPL--- 99 (328)
Q Consensus 33 ~~~~v~~~~l~~y~~~~~~----l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~~--- 99 (328)
+++.+++.++++|..+++. |..+..++... ...|+.++++++...++|++++++||++++++. | +..
T Consensus 31 ~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~ 110 (337)
T PRK13523 31 KDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAEL 110 (337)
T ss_pred CCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCC
Confidence 4677899999999999983 33444555444 556788899999999999999999999998832 2 110
Q ss_pred -----Ccchh------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccC---------CCCCcchhhhhh--
Q psy5880 100 -----PPILV------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVS---------SPNTANLRKLQA-- 156 (328)
Q Consensus 100 -----~Pv~v------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~s---------cPn~~g~~~~~~-- 156 (328)
.|.-+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||.. ||.+ |.|++++
T Consensus 111 ~~~~~~ps~~~~~~~~~~p~~mt~ee---I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~-N~RtD~yGG 186 (337)
T PRK13523 111 EGDIVAPSAIPFDEKSKTPVEMTKEQ---IKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLS-NKRTDEYGG 186 (337)
T ss_pred CCCccCCCCCCCCCCCCCCCcCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCcc-CCcCCCCCC
Confidence 11111 1233444332 25778999999999987 8999999965 8877 4454433
Q ss_pred -----hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC------CCChhhHHHHHHHhccccCCccEEEEecCCccchhhh
Q psy5880 157 -----KDQLKHLLKTVVETRNQLAVKPLPPILVKIAP------DLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYL 225 (328)
Q Consensus 157 -----~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~------~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~ 225 (328)
.+++.|++++||++ .++||.+|+++ +.+.++..++++.+ +++|+|+|+++.++...+
T Consensus 187 slenR~Rf~~eii~~ir~~-------~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l--~~~gvD~i~vs~g~~~~~--- 254 (337)
T PRK13523 187 SPENRYRFLREIIDAVKEV-------WDGPLFVRISASDYHPGGLTVQDYVQYAKWM--KEQGVDLIDVSSGAVVPA--- 254 (337)
T ss_pred CHHHHHHHHHHHHHHHHHh-------cCCCeEEEecccccCCCCCCHHHHHHHHHHH--HHcCCCEEEeCCCCCCCC---
Confidence 37899999999987 46899999997 35778889999999 899999999988653210
Q ss_pred ccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhhcCchHHHHHHH
Q psy5880 226 DARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 226 ~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i~~ 304 (328)
. ...+.|. .+++++++++.++ +||+++|+|.|++++.++|+.| ||+|++||+++. +|+|++++.+
T Consensus 255 --~----~~~~~~~-----~~~~~~~ik~~~~--ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia-dP~~~~k~~~ 320 (337)
T PRK13523 255 --R----IDVYPGY-----QVPFAEHIREHAN--IATGAVGLITSGAQAEEILQNNRADLIFIGRELLR-NPYFPRIAAK 320 (337)
T ss_pred --C----CCCCccc-----cHHHHHHHHhhcC--CcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh-CccHHHHHHH
Confidence 0 0111121 3467788899887 9999999999999999999987 999999999996 5999999988
Q ss_pred HHHH
Q psy5880 305 ELEE 308 (328)
Q Consensus 305 ~l~~ 308 (328)
++..
T Consensus 321 ~~~~ 324 (337)
T PRK13523 321 ELGF 324 (337)
T ss_pred HcCC
Confidence 7654
No 22
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.94 E-value=4.1e-25 Score=209.91 Aligned_cols=258 Identities=17% Similarity=0.172 Sum_probs=187.2
Q ss_pred CCCcCChhhHHHHHHHhHHHHHHHh---hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-C
Q psy5880 27 THNMLSSFARMRAWVLQFWLLGILK---FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-K 97 (328)
Q Consensus 27 ~~~~~~~~~~v~~~~l~~y~~~~~~---l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~ 97 (328)
+.+..++++.+++.++++|.++++. |+.+.-++..+ ...|++++++++.+.++|+++++.||++++++. | +
T Consensus 23 ~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~i~~QL~h~G 102 (353)
T cd04735 23 TTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPSGIGFEGGFSADDDSDIPGLRKLAQAIKSKGAKAILQIFHAG 102 (353)
T ss_pred ccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcccCcCCCCceecChhhhHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3455567888999999999999885 33444555544 456788999999999999999999999998832 2 1
Q ss_pred C---------CC---cchh-------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEcc---------CCCCC
Q psy5880 98 P---------LP---PILV-------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNV---------SSPNT 148 (328)
Q Consensus 98 ~---------~~---Pv~v-------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~---------scPn~ 148 (328)
. .. |.-+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||. .||.+
T Consensus 103 ~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~e---I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~ 179 (353)
T cd04735 103 RMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEE---IEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHS 179 (353)
T ss_pred CCCCccccCCCceecCCCCcccCCCCCCCccCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCcc
Confidence 0 01 1111 0123343322 25678999999999987 899999994 68877
Q ss_pred cchhhhhh-------hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC------CChhhHHHHHHHhccccCCccEEEEe
Q psy5880 149 ANLRKLQA-------KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD------LSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 149 ~g~~~~~~-------~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~------~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
|.|++++ .+++.|++++||+++..- ...++||.+|+++. .+.++..++++.+ .++|+|+|+++
T Consensus 180 -N~R~D~yGGslenR~r~~~eii~~vr~~vg~~-~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L--~~~GvD~I~Vs 255 (353)
T cd04735 180 -NRRTDEWGGSLENRMRFPLAVVKAVQEVIDKH-ADKDFILGYRFSPEEPEEPGIRMEDTLALVDKL--ADKGLDYLHIS 255 (353)
T ss_pred -CCCCcccCCcHHHHHHHHHHHHHHHHHHhccc-cCCCceEEEEECcccccCCCCCHHHHHHHHHHH--HHcCCCEEEec
Confidence 3444333 378999999999985200 00378999999973 3567888999999 99999999998
Q ss_pred cCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcC
Q psy5880 216 NTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHG 295 (328)
Q Consensus 216 n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~g 295 (328)
....... ....+. .....++.+++.+..++|||++|||+|++++.++++.|||+|++||+++. +
T Consensus 256 ~g~~~~~-----------~~~~~~----~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia-d 319 (353)
T cd04735 256 LWDFDRK-----------SRRGRD----DNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV-D 319 (353)
T ss_pred cCccccc-----------cccCCc----chHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh-C
Confidence 7543210 000010 12355566777663349999999999999999999999999999999996 4
Q ss_pred chHHHHHHHHHH
Q psy5880 296 PPLVTRIKSELE 307 (328)
Q Consensus 296 p~~~~~i~~~l~ 307 (328)
|+|+++++++..
T Consensus 320 Pdl~~k~~~G~~ 331 (353)
T cd04735 320 PDWVEKIKEGRE 331 (353)
T ss_pred ccHHHHHHcCCh
Confidence 999999988754
No 23
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.93 E-value=1e-24 Score=206.32 Aligned_cols=256 Identities=12% Similarity=0.136 Sum_probs=187.5
Q ss_pred CCCcCChhhHHHHHHHhHHHHHHHh----hcCccceEEec-cCCC---CCcCccCCCchHHHHHHHHHHHHHhhhhc---
Q psy5880 27 THNMLSSFARMRAWVLQFWLLGILK----FGDVAHYFVVN-VSSP---NTANLRKLQAKDQLKHLLKTVVETRNQLA--- 95 (328)
Q Consensus 27 ~~~~~~~~~~v~~~~l~~y~~~~~~----l~~~~~~v~~n-~ssp---N~~gl~~~~~~~~L~~ll~~v~~~~~~~~--- 95 (328)
+.+..+.++.+++..+++|.++++. |..++.++..+ ...| +.++++++.+.++|++++++||+.++++.
T Consensus 23 ~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql 102 (338)
T cd04733 23 SERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDLEAFREWAAAAKANGALIWAQL 102 (338)
T ss_pred ccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 3444556778899999999999983 34555566544 5567 78899999999999999999999998832
Q ss_pred -C-CC----------CCcchh----------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC-------
Q psy5880 96 -L-KP----------LPPILV----------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS------- 145 (328)
Q Consensus 96 -~-~~----------~~Pv~v----------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc------- 145 (328)
| +. ..|.-+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||..|
T Consensus 103 ~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~e---I~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qF 179 (338)
T cd04733 103 NHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEE---IEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQF 179 (338)
T ss_pred cCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHh
Confidence 2 11 011101 1122333222 25678999999999987 89999999664
Q ss_pred --CCCcchhhhhh-------hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC------CCChhhHHHHHHHhccccCCcc
Q psy5880 146 --PNTANLRKLQA-------KDQLKHLLKTVVETRNQLAVKPLPPILVKIAP------DLSLDEKKDIADVVLDSKCKVD 210 (328)
Q Consensus 146 --Pn~~g~~~~~~-------~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~------~~~~~~~~~~a~~l~~~~~G~d 210 (328)
|.+ +.|++++ .+++.+++++||+++ + .++||.+|+++ +++.++..++++.| +++|+|
T Consensus 180 lsp~~-N~R~D~yGGslenR~rf~~EiI~aIR~av---G--~d~~v~vris~~~~~~~g~~~eea~~ia~~L--e~~Gvd 251 (338)
T cd04733 180 LSPLT-NKRTDEYGGSLENRARLLLEIYDAIRAAV---G--PGFPVGIKLNSADFQRGGFTEEDALEVVEAL--EEAGVD 251 (338)
T ss_pred cCCcC-CCCCccCCCCHHHHHHHHHHHHHHHHHHc---C--CCCeEEEEEcHHHcCCCCCCHHHHHHHHHHH--HHcCCC
Confidence 876 3443332 478999999999884 3 57899999984 46778889999999 999999
Q ss_pred EEEEecCCccchhhhccccccccCCCCCCcC--chHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeee
Q psy5880 211 GLIVSNTTVDRYEYLDARYKEETGGLSGEPL--RNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQI 287 (328)
Q Consensus 211 ~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~--~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~v 287 (328)
+|.++.++...+... +....+.. ....++..+++++.++ +||+++|+|.+++++.++++.| ||+|++
T Consensus 252 ~iev~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ik~~v~--iPVi~~G~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 252 LVELSGGTYESPAMA--------GAKKESTIAREAYFLEFAEKIRKVTK--TPLMVTGGFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred EEEecCCCCCCcccc--------ccccCCccccchhhHHHHHHHHHHcC--CCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 999998754311000 00000000 1123577788999987 9999999999999999999987 999999
Q ss_pred hhHHhhcCchHHHHHHH
Q psy5880 288 YTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 288 g~a~l~~gp~~~~~i~~ 304 (328)
||+++. +|+|++++++
T Consensus 322 gR~~ia-dP~~~~k~~~ 337 (338)
T cd04733 322 ARPLAL-EPDLPNKLLA 337 (338)
T ss_pred ChHhhh-CccHHHHHhc
Confidence 999986 5999999875
No 24
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.93 E-value=3.1e-24 Score=202.96 Aligned_cols=254 Identities=16% Similarity=0.103 Sum_probs=183.8
Q ss_pred hhhHHHHHHHhHHHHHHHh----hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-CC--C-
Q psy5880 33 SFARMRAWVLQFWLLGILK----FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-KP--L- 99 (328)
Q Consensus 33 ~~~~v~~~~l~~y~~~~~~----l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~--~- 99 (328)
.++.+++.++++|..+++. |+.+.-++... ..+|++++++++.+.++|+++++.+|+.++++. | +. .
T Consensus 27 ~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~G~~~~~ 106 (343)
T cd04734 27 EDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHLGRRGDG 106 (343)
T ss_pred cCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCCCcCcCc
Confidence 5677899999999999983 34455555544 567899999999999999999999999998832 2 11 0
Q ss_pred -----Cc---chh------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEcc---------CCCCCcchhhhh
Q psy5880 100 -----PP---ILV------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNV---------SSPNTANLRKLQ 155 (328)
Q Consensus 100 -----~P---v~v------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~---------scPn~~g~~~~~ 155 (328)
+| .-+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||. .||.+ +.|+++
T Consensus 107 ~~~~~~~~~ps~~~~~~~~~~~~~mt~~e---I~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~-N~RtD~ 182 (343)
T cd04734 107 DGSWLPPLAPSAVPEPRHRAVPKAMEEED---IEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLT-NRRTDE 182 (343)
T ss_pred ccCCCcccCCCCCCCCCCCCCCCcCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCc-CCCCCc
Confidence 11 100 1122343322 25678999999999887 899999997 37766 344433
Q ss_pred h-------hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC------CChhhHHHHHHHhccccCC-ccEEEEecCCccc
Q psy5880 156 A-------KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD------LSLDEKKDIADVVLDSKCK-VDGLIVSNTTVDR 221 (328)
Q Consensus 156 ~-------~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~------~~~~~~~~~a~~l~~~~~G-~d~i~~~n~~~~~ 221 (328)
+ .+++.+++++||+++ + .++||.+|+++. .+.++..++++.+ +++| +|+|+++.+....
T Consensus 183 yGGslenR~r~~~eiv~~ir~~v---g--~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l--~~~G~vd~i~vs~g~~~~ 255 (343)
T cd04734 183 YGGSLENRMRFLLEVLAAVRAAV---G--PDFIVGIRISGDEDTEGGLSPDEALEIAARL--AAEGLIDYVNVSAGSYYT 255 (343)
T ss_pred CCCCHHHHhHHHHHHHHHHHHHc---C--CCCeEEEEeehhhccCCCCCHHHHHHHHHHH--HhcCCCCEEEeCCCCCCc
Confidence 2 378999999999884 2 578899999874 4567888999999 8998 8999997654321
Q ss_pred hhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhhcCchHHH
Q psy5880 222 YEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVT 300 (328)
Q Consensus 222 ~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~ 300 (328)
....... ....+.+ ....++.++++++.++ +|||++|+|++++++.++++.| ||+|++||+++. +|+|++
T Consensus 256 ~~~~~~~---~~~~~~~---~~~~~~~~~~ik~~~~--ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la-dP~l~~ 326 (343)
T cd04734 256 LLGLAHV---VPSMGMP---PGPFLPLAARIKQAVD--LPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA-DPHLVA 326 (343)
T ss_pred ccccccc---cCCCCCC---cchhHHHHHHHHHHcC--CCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh-CccHHH
Confidence 0000000 0000111 1123677888999887 9999999999999999999966 999999999996 599999
Q ss_pred HHHHHH
Q psy5880 301 RIKSEL 306 (328)
Q Consensus 301 ~i~~~l 306 (328)
++.++.
T Consensus 327 k~~~g~ 332 (343)
T cd04734 327 KAREGR 332 (343)
T ss_pred HHHcCC
Confidence 998754
No 25
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.92 E-value=5.2e-24 Score=201.35 Aligned_cols=245 Identities=16% Similarity=0.170 Sum_probs=180.9
Q ss_pred hhhHHHHHHHhHHHHHHHh----hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhh----cC-CCC---
Q psy5880 33 SFARMRAWVLQFWLLGILK----FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQL----AL-KPL--- 99 (328)
Q Consensus 33 ~~~~v~~~~l~~y~~~~~~----l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~----~~-~~~--- 99 (328)
+++..++..+++|..+++. +...+.++... ...|++++++++...++|++++++||+.++++ .| +..
T Consensus 27 ~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~G~~~~~ 106 (336)
T cd02932 27 EDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHAGRKAST 106 (336)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccCCCcCCCC
Confidence 3677899999999999983 44556666655 56789999999999999999999999999883 22 100
Q ss_pred ------------------Ccc---hh------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC------
Q psy5880 100 ------------------PPI---LV------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS------ 145 (328)
Q Consensus 100 ------------------~Pv---~v------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc------ 145 (328)
.|+ -+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||..|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~e---I~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~q 183 (336)
T cd02932 107 APPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREE---IAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQ 183 (336)
T ss_pred CCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHH
Confidence 010 00 1122233222 24678999999999887 89999999654
Q ss_pred ---CCCcchhhh-------hhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC------CCChhhHHHHHHHhccccCCc
Q psy5880 146 ---PNTANLRKL-------QAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP------DLSLDEKKDIADVVLDSKCKV 209 (328)
Q Consensus 146 ---Pn~~g~~~~-------~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~------~~~~~~~~~~a~~l~~~~~G~ 209 (328)
|.+ +.|.+ ...+++.+++++||+++ + .++||.+|+++ +++.++..++++.+ ++.|+
T Consensus 184 Flsp~~-N~R~D~yGgsl~nr~rf~~eiv~aIR~~v---G--~d~~v~vri~~~~~~~~g~~~~e~~~ia~~L--e~~gv 255 (336)
T cd02932 184 FLSPLS-NKRTDEYGGSLENRMRFLLEVVDAVRAVW---P--EDKPLFVRISATDWVEGGWDLEDSVELAKAL--KELGV 255 (336)
T ss_pred hcCCcc-CCCCcccCCCHHHHhHHHHHHHHHHHHHc---C--CCceEEEEEcccccCCCCCCHHHHHHHHHHH--HHcCC
Confidence 654 22332 34578999999999883 3 57999999995 35677888999999 89999
Q ss_pred cEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeeh
Q psy5880 210 DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIY 288 (328)
Q Consensus 210 d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg 288 (328)
|+|.++....... ...... ....++..+++++.++ +||+++|||.+++++.++++.| ||+|++|
T Consensus 256 d~iev~~g~~~~~-----------~~~~~~--~~~~~~~~~~ir~~~~--iPVi~~G~i~t~~~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 256 DLIDVSSGGNSPA-----------QKIPVG--PGYQVPFAERIRQEAG--IPVIAVGLITDPEQAEAILESGRADLVALG 320 (336)
T ss_pred CEEEECCCCCCcc-----------cccCCC--ccccHHHHHHHHhhCC--CCEEEeCCCCCHHHHHHHHHcCCCCeehhh
Confidence 9999875432100 000000 1123577788999887 9999999999999999999998 9999999
Q ss_pred hHHhhcCchHHHHHHH
Q psy5880 289 TSFVYHGPPLVTRIKS 304 (328)
Q Consensus 289 ~a~l~~gp~~~~~i~~ 304 (328)
|+++. +|+|++++.+
T Consensus 321 R~~i~-dP~~~~k~~~ 335 (336)
T cd02932 321 RELLR-NPYWPLHAAA 335 (336)
T ss_pred HHHHh-CccHHHHHhh
Confidence 99996 5999999864
No 26
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.92 E-value=8.3e-24 Score=199.51 Aligned_cols=240 Identities=17% Similarity=0.169 Sum_probs=179.7
Q ss_pred ChhhHHHHHHHhHHHHHHHh--hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-CCC----
Q psy5880 32 SSFARMRAWVLQFWLLGILK--FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-KPL---- 99 (328)
Q Consensus 32 ~~~~~v~~~~l~~y~~~~~~--l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~~---- 99 (328)
..++.+++..+.+|..+++. ++..+-++..+ ...|+.++++++.+.++|+++++.||++++++. | +..
T Consensus 28 ~~~G~~t~~~~~~y~~rA~gglIi~~~~~v~~~g~~~~~~~~l~~d~~i~~lr~la~~vh~~ga~~~~QL~H~G~~~~~~ 107 (338)
T cd02933 28 DPDGVPTDLMAEYYAQRASAGLIITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTDAVHAKGGKIFLQLWHVGRVSHPS 107 (338)
T ss_pred CCCCCCCHHHHHHHHHHhcCceEEeCceeeCccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCeEEEEcccCccCCCcc
Confidence 35778899999999999985 23445555544 567888899999999999999999999998832 2 100
Q ss_pred ------Cc---chh---------------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC---------
Q psy5880 100 ------PP---ILV---------------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS--------- 145 (328)
Q Consensus 100 ------~P---v~v---------------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc--------- 145 (328)
.| ..+ ..|..|+..+ .++.+++|+++|+++.+ ++|+||||..|
T Consensus 108 ~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~e---I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlS 184 (338)
T cd02933 108 LLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEE---IPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLR 184 (338)
T ss_pred cccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcC
Confidence 11 111 0122233222 24678999999999987 89999999776
Q ss_pred CCCcchhhhhh-------hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC---------CChhhHHHHHHHhccccCCc
Q psy5880 146 PNTANLRKLQA-------KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD---------LSLDEKKDIADVVLDSKCKV 209 (328)
Q Consensus 146 Pn~~g~~~~~~-------~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~---------~~~~~~~~~a~~l~~~~~G~ 209 (328)
|.+ +.|++++ .+++.|++++||+++ + .+ ||++|+++. .+.++..++++.| .++|+
T Consensus 185 p~~-N~R~D~yGGslenR~rf~~eii~air~~v---g--~d-~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l--~~~g~ 255 (338)
T cd02933 185 DGS-NKRTDEYGGSIENRARFLLEVVDAVAEAI---G--AD-RVGIRLSPFGTFNDMGDSDPEATFSYLAKEL--NKRGL 255 (338)
T ss_pred Ccc-CCCCCcCCCcHHHhhhHHHHHHHHHHHHh---C--CC-ceEEEECccccCCCCCCCCCHHHHHHHHHHH--HHcCC
Confidence 766 4454433 368999999999874 2 34 899999864 2557788999999 89999
Q ss_pred cEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeeh
Q psy5880 210 DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIY 288 (328)
Q Consensus 210 d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg 288 (328)
|+|+++...... .. ....+++++++++.++ +|||++|||+ ++++.++++.| ||+|++|
T Consensus 256 d~i~vs~g~~~~--------------~~----~~~~~~~~~~ik~~~~--ipvi~~G~i~-~~~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 256 AYLHLVEPRVAG--------------NP----EDQPPDFLDFLRKAFK--GPLIAAGGYD-AESAEAALADGKADLVAFG 314 (338)
T ss_pred cEEEEecCCCCC--------------cc----cccchHHHHHHHHHcC--CCEEEECCCC-HHHHHHHHHcCCCCEEEeC
Confidence 999996542210 00 1234577888999987 9999999997 99999999987 9999999
Q ss_pred hHHhhcCchHHHHHHHH
Q psy5880 289 TSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 289 ~a~l~~gp~~~~~i~~~ 305 (328)
|+++. +|+|++++.++
T Consensus 315 R~~la-dP~~~~k~~~g 330 (338)
T cd02933 315 RPFIA-NPDLVERLKNG 330 (338)
T ss_pred Hhhhh-CcCHHHHHhcC
Confidence 99986 59999999764
No 27
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.92 E-value=1.7e-24 Score=192.31 Aligned_cols=147 Identities=20% Similarity=0.201 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCc------chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhh
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDE 194 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~ 194 (328)
..+++.++++...+++|+||||++||+.+ |...+++++.+.++++++++ .++||+||++++.+..+
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~--------~~~PVsvKiR~~~~~~~ 149 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE--------LNKPIFVKIRGNCIPLD 149 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc--------CCCcEEEEeCCCCCcch
Confidence 56788888888877899999999999953 44567899999999999984 47899999999887667
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..++++.+ +++|+|+|+++... +|. .+..+++++++++.++ .+|||++|||.|++|+
T Consensus 150 ~~~~a~~l--~~aGad~i~Vd~~~------------------~g~--~~a~~~~I~~i~~~~~-~ipIIgNGgI~s~eda 206 (231)
T TIGR00736 150 ELIDALNL--VDDGFDGIHVDAMY------------------PGK--PYADMDLLKILSEEFN-DKIIIGNNSIDDIESA 206 (231)
T ss_pred HHHHHHHH--HHcCCCEEEEeeCC------------------CCC--chhhHHHHHHHHHhcC-CCcEEEECCcCCHHHH
Confidence 88999999 99999999986421 221 1146899999999883 3999999999999999
Q ss_pred HHHHHhccCeeeehhHHhhcCchH
Q psy5880 275 FEKIKAGASLVQIYTSFVYHGPPL 298 (328)
Q Consensus 275 ~~~l~~GAd~V~vg~a~l~~gp~~ 298 (328)
.+++++|||+||+||+++...-+|
T Consensus 207 ~e~l~~GAd~VmvgR~~l~~~~~~ 230 (231)
T TIGR00736 207 KEMLKAGADFVSVARAILKGNVEF 230 (231)
T ss_pred HHHHHhCCCeEEEcHhhccCCcCc
Confidence 999999999999999998544344
No 28
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.92 E-value=1.3e-23 Score=199.13 Aligned_cols=245 Identities=17% Similarity=0.161 Sum_probs=180.6
Q ss_pred hhhHHHHHHHhHHHHHHHh----hcCccceEEec--cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-CCC--
Q psy5880 33 SFARMRAWVLQFWLLGILK----FGDVAHYFVVN--VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-KPL-- 99 (328)
Q Consensus 33 ~~~~v~~~~l~~y~~~~~~----l~~~~~~v~~n--~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~~-- 99 (328)
.++.+++..+++|..+++. |+.+..++... ...|++++++++.+.+.|+++++.+|++++++. | +..
T Consensus 27 ~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~~l~d~vh~~Ga~i~~QL~H~Gr~~~ 106 (361)
T cd04747 27 PGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKKVVDEVHAAGGKIAPQLWHVGAMRK 106 (361)
T ss_pred CCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCEEEEeccCCCCCcC
Confidence 4677899999999999983 34555555433 223678899999999999999999999998832 2 110
Q ss_pred ---------Cc---chh-----cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC---------CCCcchh
Q psy5880 100 ---------PP---ILV-----KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS---------PNTANLR 152 (328)
Q Consensus 100 ---------~P---v~v-----ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc---------Pn~~g~~ 152 (328)
.| .-+ ..|..|+.++ .++.+++|+++|+++.+ ++|+||||..| |.+ |.|
T Consensus 107 ~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~e---I~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~-N~R 182 (361)
T cd04747 107 LGTPPFPDVPPLSPSGLVGPGKPVGREMTEAD---IDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGT-NRR 182 (361)
T ss_pred cccCccCCCceeCCCCCCcCCCCCCccCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCC-CCC
Confidence 01 111 1123344332 25678999999999987 89999999776 777 455
Q ss_pred hhhhh-------HHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC----------CChhhHHHHHHHhccccCCccEEEEe
Q psy5880 153 KLQAK-------DQLKHLLKTVVETRNQLAVKPLPPILVKIAPD----------LSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 153 ~~~~~-------~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~----------~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
+++++ +++.|++++||+++ + .++||.+|+++. .+.++...+++.+ .++|+|+|+++
T Consensus 183 tDeYGGslenR~Rf~~eii~air~~v---G--~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l--~~~gvd~i~vs 255 (361)
T cd04747 183 ADGYGGSLAARSRFAAEVVKAIRAAV---G--PDFPIILRFSQWKQQDYTARLADTPDELEALLAPL--VDAGVDIFHCS 255 (361)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHc---C--CCCeEEEEECcccccccccCCCCCHHHHHHHHHHH--HHcCCCEEEec
Confidence 54433 68999999999984 2 579999999962 3556778889999 89999999987
Q ss_pred cCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCC------------------CCHHHHHHH
Q psy5880 216 NTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGV------------------FSGKDAFEK 277 (328)
Q Consensus 216 n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI------------------~s~~da~~~ 277 (328)
......+ .+.|. .+...+.+++.++ +||+++|+| +|++++.++
T Consensus 256 ~g~~~~~------------~~~~~-----~~~~~~~~k~~~~--~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~ 316 (361)
T cd04747 256 TRRFWEP------------EFEGS-----ELNLAGWTKKLTG--LPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLER 316 (361)
T ss_pred CCCccCC------------CcCcc-----chhHHHHHHHHcC--CCEEEECCcccccccccccccccccccCCHHHHHHH
Confidence 6421100 01111 2355677888887 999999999 699999999
Q ss_pred HHhc-cCeeeehhHHhhcCchHHHHHHHHHHH
Q psy5880 278 IKAG-ASLVQIYTSFVYHGPPLVTRIKSELEE 308 (328)
Q Consensus 278 l~~G-Ad~V~vg~a~l~~gp~~~~~i~~~l~~ 308 (328)
|+.| ||+|++||+++. +|+|++++.++..+
T Consensus 317 l~~g~~D~V~~gR~~ia-dP~~~~k~~~g~~~ 347 (361)
T cd04747 317 LERGEFDLVAVGRALLS-DPAWVAKVREGRLD 347 (361)
T ss_pred HHCCCCCeehhhHHHHh-CcHHHHHHHcCCcc
Confidence 9977 999999999996 59999999877543
No 29
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.92 E-value=1.7e-23 Score=200.58 Aligned_cols=255 Identities=11% Similarity=0.097 Sum_probs=179.6
Q ss_pred cCChhhHHHHHHHhHHHHHHHh----hcCccceEEeccC---CCCCc--CccCCCchHHHHHHHHHHHHHhhhh----cC
Q psy5880 30 MLSSFARMRAWVLQFWLLGILK----FGDVAHYFVVNVS---SPNTA--NLRKLQAKDQLKHLLKTVVETRNQL----AL 96 (328)
Q Consensus 30 ~~~~~~~v~~~~l~~y~~~~~~----l~~~~~~v~~n~s---spN~~--gl~~~~~~~~L~~ll~~v~~~~~~~----~~ 96 (328)
..+.++..++.++.+|..+++. |+.++.++..... .|+.. ++++++..+.|++++++||+.+.++ .|
T Consensus 26 ~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~k~l~davh~~G~~i~~QL~H 105 (382)
T cd02931 26 LADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFIRTAKEMTERVHAYGTKIFLQLTA 105 (382)
T ss_pred ccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHHhHHHHHHHHHHHHcCCEEEEEccC
Confidence 3456778999999999999983 3344555544421 23443 3455567899999999999999882 22
Q ss_pred --CC---------CC---cchh-------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEcc---CC------
Q psy5880 97 --KP---------LP---PILV-------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNV---SS------ 145 (328)
Q Consensus 97 --~~---------~~---Pv~v-------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~---sc------ 145 (328)
+. .. |.-+ ..|..|+.++ ..+.+++|+++|+++.+ ++|+||||. +|
T Consensus 106 ~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~e---I~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFL 182 (382)
T cd02931 106 GFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEE---VETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFT 182 (382)
T ss_pred cCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhc
Confidence 10 01 1111 1122333322 24778999999999987 899999986 43
Q ss_pred -CCCcchhhhhh-------hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC--------------------CChhhHHH
Q psy5880 146 -PNTANLRKLQA-------KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD--------------------LSLDEKKD 197 (328)
Q Consensus 146 -Pn~~g~~~~~~-------~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~--------------------~~~~~~~~ 197 (328)
|.+ |.|++++ .+++.+++++||+++ + .++||.+|+++. ++.++..+
T Consensus 183 Sp~~-N~RtDeyGGslenR~rf~~eii~~vr~~~---g--~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~ 256 (382)
T cd02931 183 ISLF-NKRTDKYGGSLENRLRFAIEIVEEIKARC---G--EDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLK 256 (382)
T ss_pred CCcc-CCCCCcCCCCHHHHhHHHHHHHHHHHHhc---C--CCceEEEEEechhhccccccccccccccccCCCCHHHHHH
Confidence 555 4555444 368999999999874 2 578999999962 35577889
Q ss_pred HHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHH
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~ 277 (328)
+++.+ .++|+|+|+++.++........+. .+.++ ...+.+++.+++.++ +||+++|||++++++.++
T Consensus 257 ~~~~l--~~~gvD~l~vs~g~~~~~~~~~~~------~~~~~---~~~~~~~~~ik~~~~--~pvi~~G~i~~~~~~~~~ 323 (382)
T cd02931 257 AAKIL--EEAGYDALDVDAGSYDAWYWNHPP------MYQKK---GMYLPYCKALKEVVD--VPVIMAGRMEDPELASEA 323 (382)
T ss_pred HHHHH--HHhCCCEEEeCCCCCcccccccCC------ccCCc---chhHHHHHHHHHHCC--CCEEEeCCCCCHHHHHHH
Confidence 99999 899999999987653211000000 01111 122567788999887 999999999999999999
Q ss_pred HHhc-cCeeeehhHHhhcCchHHHHHHHHHH
Q psy5880 278 IKAG-ASLVQIYTSFVYHGPPLVTRIKSELE 307 (328)
Q Consensus 278 l~~G-Ad~V~vg~a~l~~gp~~~~~i~~~l~ 307 (328)
|+.| ||+|++||+++. +|+|++++.++..
T Consensus 324 l~~g~~D~V~~gR~~la-dP~l~~k~~~g~~ 353 (382)
T cd02931 324 INEGIADMISLGRPLLA-DPDVVNKIRRGRF 353 (382)
T ss_pred HHcCCCCeeeechHhHh-CccHHHHHHcCCc
Confidence 9977 999999999996 5999999988753
No 30
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.91 E-value=1.4e-23 Score=196.00 Aligned_cols=161 Identities=18% Similarity=0.119 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCc------chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCh-
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSL- 192 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~- 192 (328)
..++|+++++.+.+ ++|+|+||++||+.. |...+.+++.+.+++++++++ .++||+||++.+++.
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~-------~~~PVsvKiR~g~~~~ 137 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEA-------VNIPVTVKHRIGIDPL 137 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHH-------hCCCeEEEEecCCCCc
Confidence 45666777776665 599999999999974 334567899999999999987 578999999987643
Q ss_pred ---hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCc---CchHHHHHHHHHHHHcCCCccEEEec
Q psy5880 193 ---DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEP---LRNKSTELISEMYKLTKGKLPIIGVG 266 (328)
Q Consensus 193 ---~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~---~~~~~l~~v~~i~~~~~~~ipvia~G 266 (328)
++..++++.+ .++|++.|++|+++.. ..|++|+. ..|..++.++++++.+. ++|||++|
T Consensus 138 ~~~~~~~~~~~~l--~~~G~~~itvHgRt~~------------~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipVi~NG 202 (318)
T TIGR00742 138 DSYEFLCDFVEIV--SGKGCQNFIVHARKAW------------LSGLSPKENREIPPLRYERVYQLKKDFP-HLTIEING 202 (318)
T ss_pred chHHHHHHHHHHH--HHcCCCEEEEeCCchh------------hcCCCccccccCCchhHHHHHHHHHhCC-CCcEEEEC
Confidence 4567889999 9999999999998742 13466653 34556788999999873 39999999
Q ss_pred CCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 267 GVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 267 GI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
||.|++|+.+++. |||+|||||+++. +|+++.++...
T Consensus 203 dI~s~~da~~~l~-g~dgVMigRgal~-nP~if~~~~~~ 239 (318)
T TIGR00742 203 GIKNSEQIKQHLS-HVDGVMVGREAYE-NPYLLANVDRE 239 (318)
T ss_pred CcCCHHHHHHHHh-CCCEEEECHHHHh-CCHHHHHHHHH
Confidence 9999999999996 9999999999986 59999988653
No 31
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.91 E-value=1.3e-23 Score=195.81 Aligned_cols=157 Identities=19% Similarity=0.223 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCc------chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCh-
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSL- 192 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~- 192 (328)
..++|+++|+++.+ ++|+|+||++||+.. |...+.+++++.+++++|+++. + .++||+||++.+++.
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~---~--~~~pVsvKiR~g~~~~ 147 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAV---P--AHLPVTVKVRLGWDSG 147 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhc---C--CCcceEEEEECCCCCc
Confidence 45677777777665 699999999999842 2234678899999999999873 1 258999999988653
Q ss_pred hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHH
Q psy5880 193 DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK 272 (328)
Q Consensus 193 ~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~ 272 (328)
++..++++.+ +++|+|.|++|+++.. .+|+|++. .++.++++++.++ +|||++|||.|++
T Consensus 148 ~~~~~~a~~l--~~~Gvd~i~Vh~Rt~~-------------~~y~g~~~---~~~~i~~ik~~~~--iPVi~nGdI~t~~ 207 (312)
T PRK10550 148 ERKFEIADAV--QQAGATELVVHGRTKE-------------DGYRAEHI---NWQAIGEIRQRLT--IPVIANGEIWDWQ 207 (312)
T ss_pred hHHHHHHHHH--HhcCCCEEEECCCCCc-------------cCCCCCcc---cHHHHHHHHhhcC--CcEEEeCCcCCHH
Confidence 4578999999 9999999999987643 46777653 2478999999987 9999999999999
Q ss_pred HHHHHHH-hccCeeeehhHHhhcCchHHHHHH
Q psy5880 273 DAFEKIK-AGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 273 da~~~l~-~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
|+.++++ .|||+||+||+++. +|+|++++.
T Consensus 208 da~~~l~~~g~DgVmiGRg~l~-nP~lf~~~~ 238 (312)
T PRK10550 208 SAQQCMAITGCDAVMIGRGALN-IPNLSRVVK 238 (312)
T ss_pred HHHHHHhccCCCEEEEcHHhHh-CcHHHHHhh
Confidence 9999996 78999999999985 599999865
No 32
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.91 E-value=5.1e-24 Score=201.63 Aligned_cols=259 Identities=20% Similarity=0.240 Sum_probs=179.5
Q ss_pred CCCcCChhhHHHH-HHHhHHHHHHH-h---hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C
Q psy5880 27 THNMLSSFARMRA-WVLQFWLLGIL-K---FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L 96 (328)
Q Consensus 27 ~~~~~~~~~~v~~-~~l~~y~~~~~-~---l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~ 96 (328)
+.+.+..++.+.. ..+++|.++++ . |+.+..++... ...|++++++++.+.+.|++++++||++++++. |
T Consensus 23 ~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~Ga~i~~QL~H 102 (341)
T PF00724_consen 23 TTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAHGAKIIAQLWH 102 (341)
T ss_dssp -SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHTTSEEEEEEE-
T ss_pred CCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhcCccceeeccc
Confidence 4445555665544 89999999999 3 34445555554 567899999999999999999999999998832 2
Q ss_pred C---C-------C--Ccc---hhccc--------CCcccccccchhHHHHHHHHHHHHhcc-cccEEEEc---------c
Q psy5880 97 K---P-------L--PPI---LVKIA--------PDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVN---------V 143 (328)
Q Consensus 97 ~---~-------~--~Pv---~vki~--------~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN---------~ 143 (328)
. . . .|. .+..+ ..|+..+ ..+.+++|+++|+++.+ |+|+|||| |
T Consensus 103 ~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~e---I~~ii~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qF 179 (341)
T PF00724_consen 103 AGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEE---IEEIIEDFAQAARRAKEAGFDGVEIHAAHGYLLSQF 179 (341)
T ss_dssp -GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHH---HHHHHHHHHHHHHHHHHTT-SEEEEEESTTSHHHHH
T ss_pred cccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHH---HHHHHHHHHHHHHHHHHhccCeEeecccchhhhhhe
Confidence 0 0 0 011 11111 1222211 24678999999999988 89999997 5
Q ss_pred CCCCCcchhhhhhh-------HHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC------ChhhHHHHHHHhccccCCcc
Q psy5880 144 SSPNTANLRKLQAK-------DQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL------SLDEKKDIADVVLDSKCKVD 210 (328)
Q Consensus 144 scPn~~g~~~~~~~-------~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~------~~~~~~~~a~~l~~~~~G~d 210 (328)
.+|.+ |.|+++|+ +++.|++++||+++. .++||.+|+++.- +.++..++++.+ .++|+|
T Consensus 180 LSp~~-N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg-----~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~--~~~~~d 251 (341)
T PF00724_consen 180 LSPLT-NRRTDEYGGSLENRARFLLEIIEAIREAVG-----PDFPVGVRLSPDDFVEGGITLEETIEIAKLL--EELGVD 251 (341)
T ss_dssp HSTTT----SSTTSSSHHHHHHHHHHHHHHHHHHHT-----GGGEEEEEEETTCSSTTSHHSHHHHHHHHHH--HHHHHT
T ss_pred eeecc-CCCchhhhhhhchhhHHHHHHHHHHHHHhc-----CCceEEEEEeeecccCCCCchHHHHHHHHHH--HHHhhh
Confidence 66777 56766554 689999999999863 5789999999852 335677788888 889999
Q ss_pred EEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehh
Q psy5880 211 GLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYT 289 (328)
Q Consensus 211 ~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~ 289 (328)
.+.++....... ..+. ... .........+.....+++.++ +|||++|||++++.+.++++.| ||+|.+||
T Consensus 252 ~~~~~~~~~~~~--~~~~---~~~--~~~~~~~~~~~~a~~ik~~~~--~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR 322 (341)
T PF00724_consen 252 FLDVSHGSYVHW--SEPR---PSP--PFDFEPGYNLDLAEAIKKAVK--IPVIGVGGIRTPEQAEKALEEGKADLVAMGR 322 (341)
T ss_dssp TEEEEEESEEEE--EBTS---STT--TTTTTTTTTHHHHHHHHHHHS--SEEEEESSTTHHHHHHHHHHTTSTSEEEESH
T ss_pred hccccccccccc--cccc---ccc--ccccccchhhhhhhhhhhhcC--ceEEEEeeecchhhhHHHHhcCCceEeeccH
Confidence 887654322100 0000 000 000011133567788888887 9999999999999999999988 99999999
Q ss_pred HHhhcCchHHHHHHHHH
Q psy5880 290 SFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 290 a~l~~gp~~~~~i~~~l 306 (328)
+++. +|+|++|++++.
T Consensus 323 ~~la-dPd~~~k~~~g~ 338 (341)
T PF00724_consen 323 PLLA-DPDLPNKAREGR 338 (341)
T ss_dssp HHHH--TTHHHHHHHTT
T ss_pred HHHh-CchHHHHHHcCC
Confidence 9997 599999998764
No 33
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.91 E-value=9.9e-23 Score=193.75 Aligned_cols=249 Identities=12% Similarity=0.054 Sum_probs=182.9
Q ss_pred hHHHHHHHhHHHHHHHh----hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-CC------
Q psy5880 35 ARMRAWVLQFWLLGILK----FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-KP------ 98 (328)
Q Consensus 35 ~~v~~~~l~~y~~~~~~----l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~------ 98 (328)
+..++.++++|..+++. ++.+..++..+ ...|++++++++...++|+++++++|+.++++. | +.
T Consensus 29 ~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~ 108 (353)
T cd02930 29 DDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPL 108 (353)
T ss_pred CCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCC
Confidence 45688899999999983 34556666655 567888999999999999999999999998832 2 11
Q ss_pred -CCcchh------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEcc---------CCCCCcchhhhhh-----
Q psy5880 99 -LPPILV------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNV---------SSPNTANLRKLQA----- 156 (328)
Q Consensus 99 -~~Pv~v------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~---------scPn~~g~~~~~~----- 156 (328)
..|.-+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||. .||.+ +.|++++
T Consensus 109 ~~~ps~~~~~~~~~~p~~mt~~e---I~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~-N~RtD~yGGsle 184 (353)
T cd02930 109 CVAPSAIRAPINPFTPRELSEEE---IEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRT-NKRTDEWGGSFE 184 (353)
T ss_pred CcCCCCCCCCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCcc-CCCcCccCCCHH
Confidence 011111 1233444332 24678999999999887 899999984 58876 3444333
Q ss_pred --hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC------CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccc
Q psy5880 157 --KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD------LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDAR 228 (328)
Q Consensus 157 --~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~------~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~ 228 (328)
.+++.+++++||+++ + .++||.+|+++. ++.++..++++.| +++|+|+|+++......+ .+.
T Consensus 185 nR~r~~~eiv~aIR~~v---G--~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~L--e~~G~d~i~vs~g~~e~~---~~~ 254 (353)
T cd02930 185 NRMRFPVEIVRAVRAAV---G--EDFIIIYRLSMLDLVEGGSTWEEVVALAKAL--EAAGADILNTGIGWHEAR---VPT 254 (353)
T ss_pred HHhHHHHHHHHHHHHHc---C--CCceEEEEecccccCCCCCCHHHHHHHHHHH--HHcCCCEEEeCCCcCCCC---Ccc
Confidence 378899999999874 3 578999999863 4667888999999 999999999975432100 000
Q ss_pred cccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhhcCchHHHHHHHHHH
Q psy5880 229 YKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIKSELE 307 (328)
Q Consensus 229 ~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i~~~l~ 307 (328)
.....++ ...+...+++++.++ +||+++|++.+++++.++++.| +|+|++||+++. +|+|+++++++..
T Consensus 255 ----~~~~~~~---~~~~~~~~~ik~~v~--iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~-dP~~~~k~~~g~~ 324 (353)
T cd02930 255 ----IATSVPR---GAFAWATAKLKRAVD--IPVIASNRINTPEVAERLLADGDADMVSMARPFLA-DPDFVAKAAAGRA 324 (353)
T ss_pred ----ccccCCc---hhhHHHHHHHHHhCC--CCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH-CccHHHHHHhCCc
Confidence 0001111 123566788999987 9999999999999999999977 999999999996 5999999988743
No 34
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.90 E-value=4.8e-23 Score=193.14 Aligned_cols=155 Identities=19% Similarity=0.227 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCc------chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChh
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLD 193 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~ 193 (328)
..++++++++.+.+ ++|+|+||++||+.. |...+++++.+.+++++|+++ .++||.+|++.+++.+
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a-------~d~pv~vKiR~G~~~~ 147 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA-------VDVPVTLKIRTGWAPE 147 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh-------cCCceEEEEEccccCC
Confidence 45666677766544 699999999999842 334567899999999999887 6889999999876543
Q ss_pred --hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH
Q psy5880 194 --EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG 271 (328)
Q Consensus 194 --~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~ 271 (328)
+..++++.+ .++|+|+|++|+++.. +.++|++. ++.++++++.++ +|||++|||.|+
T Consensus 148 ~~~~~~~a~~l--e~~G~d~i~vh~rt~~-------------~~~~G~a~----~~~i~~ik~~~~--iPVI~nGgI~s~ 206 (321)
T PRK10415 148 HRNCVEIAQLA--EDCGIQALTIHGRTRA-------------CLFNGEAE----YDSIRAVKQKVS--IPVIANGDITDP 206 (321)
T ss_pred cchHHHHHHHH--HHhCCCEEEEecCccc-------------cccCCCcC----hHHHHHHHHhcC--CcEEEeCCCCCH
Confidence 578999999 9999999999987643 33566543 478999999987 999999999999
Q ss_pred HHHHHHHH-hccCeeeehhHHhhcCchHHHHHHH
Q psy5880 272 KDAFEKIK-AGASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 272 ~da~~~l~-~GAd~V~vg~a~l~~gp~~~~~i~~ 304 (328)
+|+.++++ .|||+||+||+++. +|++++++.+
T Consensus 207 ~da~~~l~~~gadgVmiGR~~l~-nP~if~~~~~ 239 (321)
T PRK10415 207 LKARAVLDYTGADALMIGRAAQG-RPWIFREIQH 239 (321)
T ss_pred HHHHHHHhccCCCEEEEChHhhc-CChHHHHHHH
Confidence 99999997 79999999999985 5999988865
No 35
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.90 E-value=1.4e-22 Score=210.35 Aligned_cols=247 Identities=15% Similarity=0.138 Sum_probs=183.4
Q ss_pred ChhhHHHHHHHhHHHHHHHh----hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHH-hhhh----cC-CCC-
Q psy5880 32 SSFARMRAWVLQFWLLGILK----FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVET-RNQL----AL-KPL- 99 (328)
Q Consensus 32 ~~~~~v~~~~l~~y~~~~~~----l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~-~~~~----~~-~~~- 99 (328)
++++.++++++.+|..+++. |+.++.++..+ ..+||.+|++++.+.++|++++++||++ +.++ .| +..
T Consensus 424 ~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~ 503 (765)
T PRK08255 424 AVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKG 503 (765)
T ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHHHHHHHHhcCCceEEEEccCCcccc
Confidence 34678899999999999983 45667777777 6789999999999999999999999999 4663 22 100
Q ss_pred ---C------------------cchh------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccC-------
Q psy5880 100 ---P------------------PILV------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVS------- 144 (328)
Q Consensus 100 ---~------------------Pv~v------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~s------- 144 (328)
. |.-+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||..
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~e---I~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~q 580 (765)
T PRK08255 504 STRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRAD---MDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSS 580 (765)
T ss_pred cccccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHH
Confidence 0 0000 1122343322 25678999999999887 8999999976
Q ss_pred --CCCCcchhhhhh-------hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC------CChhhHHHHHHHhccccCCc
Q psy5880 145 --SPNTANLRKLQA-------KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD------LSLDEKKDIADVVLDSKCKV 209 (328)
Q Consensus 145 --cPn~~g~~~~~~-------~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~------~~~~~~~~~a~~l~~~~~G~ 209 (328)
||.+ |.|++++ .+++.|++++||+++ + .++||.+||++. ++.++..++++.| +++|+
T Consensus 581 Flsp~~-N~RtD~yGGslenR~r~~~eiv~~ir~~~---~--~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l--~~~g~ 652 (765)
T PRK08255 581 FISPLT-NQRTDEYGGSLENRLRYPLEVFRAVRAVW---P--AEKPMSVRISAHDWVEGGNTPDDAVEIARAF--KAAGA 652 (765)
T ss_pred hcCCCC-CCCCCCCCCCHHHHhHHHHHHHHHHHHhc---C--CCCeeEEEEccccccCCCCCHHHHHHHHHHH--HhcCC
Confidence 9987 4454433 368999999999884 2 578999999972 4567788999999 99999
Q ss_pred cEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeeh
Q psy5880 210 DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIY 288 (328)
Q Consensus 210 d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg 288 (328)
|+|+++....... ..+ ..++ .....+.+++|+.++ +||+++|+|++++++.++++.| ||+|++|
T Consensus 653 d~i~vs~g~~~~~--~~~--------~~~~---~~~~~~~~~ik~~~~--~pv~~~G~i~~~~~a~~~l~~g~~D~v~~g 717 (765)
T PRK08255 653 DLIDVSSGQVSKD--EKP--------VYGR---MYQTPFADRIRNEAG--IATIAVGAISEADHVNSIIAAGRADLCALA 717 (765)
T ss_pred cEEEeCCCCCCcC--CCC--------CcCc---cccHHHHHHHHHHcC--CEEEEeCCCCCHHHHHHHHHcCCcceeeEc
Confidence 9999985422100 000 0011 112356678888887 9999999999999999999977 9999999
Q ss_pred hHHhhcCchHHHHHHHH
Q psy5880 289 TSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 289 ~a~l~~gp~~~~~i~~~ 305 (328)
|+++. +|+|+.+...+
T Consensus 718 R~~l~-dP~~~~~~~~~ 733 (765)
T PRK08255 718 RPHLA-DPAWTLHEAAE 733 (765)
T ss_pred HHHHh-CccHHHHHHHH
Confidence 99996 59998777553
No 36
>KOG1799|consensus
Probab=99.90 E-value=1.1e-23 Score=190.52 Aligned_cols=193 Identities=21% Similarity=0.319 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCc-----chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhh
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTA-----NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDE 194 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~-----g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~ 194 (328)
..|.++.+..+.++ .|.+|+|++||+.- ++...+.+..+.|++.+|+.. ..+|++-|++|+++ +
T Consensus 218 ~~w~el~d~~eqag--~d~lE~nlscphgm~ergmgla~gq~p~v~~EvC~Wi~A~-------~~Ip~~~kmTPNit--d 286 (471)
T KOG1799|consen 218 KCWMELNDSGEQAG--QDDLETNLSCPHGMCERGMGLALGQCPIVDCEVCGWINAK-------ATIPMVSKMTPNIT--D 286 (471)
T ss_pred hhHHHHhhhHHhhc--ccchhccCCCCCCCccccccceeccChhhhHHHhhhhhhc-------cccccccccCCCcc--c
Confidence 34666666666666 99999999999953 233467899999999999876 68999999999887 4
Q ss_pred HHHHHHHhccccCCccEEEEecCCccch----hhhcccc----ccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEec
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRY----EYLDARY----KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVG 266 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~----~~~~~~~----~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~G 266 (328)
..++++.. ...|+.||..+||..+.- +...|.. ....||+|+.+++|+++..+..|.+..+ ++|+.+.|
T Consensus 287 ~revar~~--~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~G 363 (471)
T KOG1799|consen 287 KREVARSV--NPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIG 363 (471)
T ss_pred ccccchhc--CcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCcccccc
Confidence 77889988 899999999999875410 2233322 2346999999999999999999998886 69999999
Q ss_pred CCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHHhcccc
Q psy5880 267 GVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAH 326 (328)
Q Consensus 267 GI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~G~~~ 326 (328)
||.|++|+.++|.+|++.||||++++.+|...++.++.+|+++|.+||+.+|++++|..+
T Consensus 364 GvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~~~V~~~Ca~LK~~m~~~~~~ti~~~~G~SL 423 (471)
T KOG1799|consen 364 GVETGYDAAEFILLGSNTVQVCTGVMMHGYGHVKTLCAELKDFMKQHNFSTIEEFRGHSL 423 (471)
T ss_pred CcccccchhhHhhcCCcHhhhhhHHHhcCcchHHHHHHHHHHHHHHcCchhhhhccCcch
Confidence 999999999999999999999999999999999999999999999999999999999764
No 37
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.89 E-value=1.2e-22 Score=190.81 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCc------chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCh--
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSL-- 192 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~-- 192 (328)
.++++++++++.+ ++|+||||++||+.. |.....+++++.+++++|++. .++||+||++.+++.
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~-------~~~pv~vKir~g~~~~~ 146 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA-------VDIPVTVKIRIGWDDAH 146 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh-------cCCCEEEEEEcccCCCc
Confidence 4566666666655 599999999999731 112345789999999999987 679999999876543
Q ss_pred hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHH
Q psy5880 193 DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK 272 (328)
Q Consensus 193 ~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~ 272 (328)
.+..++++.+ .++|+|+|++++++.. ++++|++ .+++++++++.++ +|||++|||+|++
T Consensus 147 ~~~~~~a~~l--~~~G~d~i~vh~r~~~-------------~~~~~~~----~~~~i~~i~~~~~--ipvi~nGgI~~~~ 205 (319)
T TIGR00737 147 INAVEAARIA--EDAGAQAVTLHGRTRA-------------QGYSGEA----NWDIIARVKQAVR--IPVIGNGDIFSPE 205 (319)
T ss_pred chHHHHHHHH--HHhCCCEEEEEccccc-------------ccCCCch----hHHHHHHHHHcCC--CcEEEeCCCCCHH
Confidence 2467899999 8999999999986532 4466543 4688999999987 9999999999999
Q ss_pred HHHHHH-HhccCeeeehhHHhhcCchHHHHHHH
Q psy5880 273 DAFEKI-KAGASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 273 da~~~l-~~GAd~V~vg~a~l~~gp~~~~~i~~ 304 (328)
|+.+++ ..|||+||+||+++. +|+|++++.+
T Consensus 206 da~~~l~~~gad~VmigR~~l~-~P~l~~~~~~ 237 (319)
T TIGR00737 206 DAKAMLETTGCDGVMIGRGALG-NPWLFRQIEQ 237 (319)
T ss_pred HHHHHHHhhCCCEEEEChhhhh-CChHHHHHHH
Confidence 999999 578999999999985 6999988754
No 38
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.1e-22 Score=190.40 Aligned_cols=153 Identities=24% Similarity=0.262 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCc------chhhhhhhHHHHHHHHHHHHHHHhhcCCC-CCCEEEEeCCCCChh
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLAVKP-LPPILVKIAPDLSLD 193 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~-~~Pv~vKl~~~~~~~ 193 (328)
.+.++++++.+.. ++|.|+||++||... |...+.+++.+.+++++++++ . ++||.||++.+++.+
T Consensus 78 p~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~a-------v~~iPVTVKiRlG~d~~ 150 (323)
T COG0042 78 PELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEA-------VGDIPVTVKIRLGWDDD 150 (323)
T ss_pred HHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHh-------hCCCCeEEEEecccCcc
Confidence 4666666666665 589999999999963 345678999999999999998 5 599999999999877
Q ss_pred h--HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH
Q psy5880 194 E--KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG 271 (328)
Q Consensus 194 ~--~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~ 271 (328)
+ ..++++.+ .++|++.+++|+++.. .+++|++. ++.|+++++.++. +|||++|+|.|+
T Consensus 151 ~~~~~~ia~~~--~~~g~~~ltVHgRtr~-------------~~y~~~ad----~~~I~~vk~~~~~-ipvi~NGdI~s~ 210 (323)
T COG0042 151 DILALEIARIL--EDAGADALTVHGRTRA-------------QGYLGPAD----WDYIKELKEAVPS-IPVIANGDIKSL 210 (323)
T ss_pred cccHHHHHHHH--HhcCCCEEEEecccHH-------------hcCCCccC----HHHHHHHHHhCCC-CeEEeCCCcCCH
Confidence 6 67899999 9999999999999864 34566544 5889999999874 999999999999
Q ss_pred HHHHHHHH-hccCeeeehhHHhhcCchHHHHH
Q psy5880 272 KDAFEKIK-AGASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 272 ~da~~~l~-~GAd~V~vg~a~l~~gp~~~~~i 302 (328)
+|+.++++ .|||+||+||+.+ .+|++++++
T Consensus 211 ~~a~~~l~~tg~DgVMigRga~-~nP~l~~~i 241 (323)
T COG0042 211 EDAKEMLEYTGADGVMIGRGAL-GNPWLFRQI 241 (323)
T ss_pred HHHHHHHHhhCCCEEEEcHHHc-cCCcHHHHH
Confidence 99999998 7899999999997 569988764
No 39
>PLN02411 12-oxophytodienoate reductase
Probab=99.89 E-value=5.2e-22 Score=190.54 Aligned_cols=249 Identities=16% Similarity=0.164 Sum_probs=176.1
Q ss_pred hhhHHHHHHHhHHHHHHHh---hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-CCC----
Q psy5880 33 SFARMRAWVLQFWLLGILK---FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-KPL---- 99 (328)
Q Consensus 33 ~~~~v~~~~l~~y~~~~~~---l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~~---- 99 (328)
.++.+++..+++|.++++. |+.++.++..+ ...|+++|++++.+.++|++++++||+.+.++. | +..
T Consensus 38 ~dG~~t~~~~~yy~~rA~gGGLIIte~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~avH~~G~~i~~QL~H~Gr~~~~~ 117 (391)
T PLN02411 38 LNGIPNAALAEYYAQRSTPGGFLISEGTLISPTAPGFPHVPGIYSDEQVEAWKKVVDAVHAKGSIIFCQLWHVGRASHQV 117 (391)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEeCceEECcccCcCCCCCccCCHHHHHHHHHHHHHHHhcCCEEEEeccCCCCCCccc
Confidence 3677899999999999983 55667777666 567889999999999999999999999998832 2 110
Q ss_pred ------Ccc---hh------------------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEc---------
Q psy5880 100 ------PPI---LV------------------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVN--------- 142 (328)
Q Consensus 100 ------~Pv---~v------------------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN--------- 142 (328)
.|+ .+ ..|..|+..+ ..+.+++|+++|+++.+ |+|+||||
T Consensus 118 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~e---I~~ii~~f~~AA~rA~~AGFDGVEIH~AhGYLl~Q 194 (391)
T PLN02411 118 YQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSE---IPEVVEHYRQAALNAIRAGFDGIEIHGAHGYLIDQ 194 (391)
T ss_pred cccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHH
Confidence 111 00 0122333222 24679999999999987 89999998
Q ss_pred cCCCCCcchhhhhhh-------HHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC---------ChhhHHHHHHHhcccc
Q psy5880 143 VSSPNTANLRKLQAK-------DQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL---------SLDEKKDIADVVLDSK 206 (328)
Q Consensus 143 ~scPn~~g~~~~~~~-------~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~---------~~~~~~~~a~~l~~~~ 206 (328)
|.||.+ |.|+++++ +++.||+++||+++ + .+ .|.+||++.. +.++..++++.+ .+
T Consensus 195 FLSp~t-N~RtDeYGGSlENR~RF~lEIi~aVr~~v---g--~d-~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l--~~ 265 (391)
T PLN02411 195 FLKDGI-NDRTDEYGGSIENRCRFLMQVVQAVVSAI---G--AD-RVGVRVSPAIDHLDATDSDPLNLGLAVVERL--NK 265 (391)
T ss_pred hCCCcc-CCCCCcCCCCHHHHhHHHHHHHHHHHHHc---C--CC-eEEEEEcccccccCCCCCcchhhHHHHHHHH--HH
Confidence 677877 56665543 68999999999985 2 34 4999999731 123455667766 43
Q ss_pred ----C--CccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 207 ----C--KVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 207 ----~--G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
. |+|+|+++....... ... . ....++. .....+.+++++.++ +|||++||| +++++.++++.
T Consensus 266 ~~~~~g~~vd~i~vs~g~~~~~-~~~--~----~~~~~~~--~~~~~~a~~ik~~v~--~pvi~~G~i-~~~~a~~~l~~ 333 (391)
T PLN02411 266 LQLQNGSKLAYLHVTQPRYTAY-GQT--E----SGRHGSE--EEEAQLMRTLRRAYQ--GTFMCSGGF-TRELGMQAVQQ 333 (391)
T ss_pred HHhhcCCCeEEEEecCCccccc-CCC--c----ccccCCc--cchhHHHHHHHHHcC--CCEEEECCC-CHHHHHHHHHc
Confidence 2 599999986532100 000 0 0000000 012345678899887 899999999 67999999999
Q ss_pred c-cCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 281 G-ASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 281 G-Ad~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
| ||+|.+||+++. +|+|+++++++.
T Consensus 334 g~aDlV~~gR~~ia-dPdl~~k~~~g~ 359 (391)
T PLN02411 334 GDADLVSYGRLFIS-NPDLVLRFKLNA 359 (391)
T ss_pred CCCCEEEECHHHHh-CccHHHHHhcCC
Confidence 9 999999999996 599999998753
No 40
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.89 E-value=2.1e-22 Score=180.41 Aligned_cols=144 Identities=19% Similarity=0.247 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCc------chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhh
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDE 194 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~ 194 (328)
..++++++++.+.+++|.||||++||+.. |...+++++.+.++++++++ .++||+||++++++ ++
T Consensus 83 ~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~--------~~~pVsvKir~g~~-~~ 153 (233)
T cd02911 83 SLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE--------TGVPVSVKIRAGVD-VD 153 (233)
T ss_pred CHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh--------cCCCEEEEEcCCcC-cC
Confidence 35667777777766679999999999963 33456789999999999986 37899999999987 67
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..++++.+ +++|+|+||++++.. |. +..++.+++++ ++ +|||++|||.|++|+
T Consensus 154 ~~~la~~l--~~aG~d~ihv~~~~~------------------g~---~ad~~~I~~i~--~~--ipVIgnGgI~s~eda 206 (233)
T cd02911 154 DEELARLI--EKAGADIIHVDAMDP------------------GN---HADLKKIRDIS--TE--LFIIGNNSVTTIESA 206 (233)
T ss_pred HHHHHHHH--HHhCCCEEEECcCCC------------------CC---CCcHHHHHHhc--CC--CEEEEECCcCCHHHH
Confidence 88999999 999999998865321 11 12346677665 44 999999999999999
Q ss_pred HHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 275 FEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 275 ~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
.++++.|||+||+||+ .+|++++++.
T Consensus 207 ~~~l~~GaD~VmiGR~---~~p~~~~~~~ 232 (233)
T cd02911 207 KEMFSYGADMVSVARA---SLPENIEWLV 232 (233)
T ss_pred HHHHHcCCCEEEEcCC---CCchHHHHhh
Confidence 9999999999999999 3599998764
No 41
>KOG2335|consensus
Probab=99.89 E-value=3.2e-22 Score=183.70 Aligned_cols=164 Identities=20% Similarity=0.253 Sum_probs=139.2
Q ss_pred CCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCc------chhhhhhhHHHHHHHHHHHHHHH
Q psy5880 99 LPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRN 172 (328)
Q Consensus 99 ~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~------g~~~~~~~~~~~~i~~~v~~~~~ 172 (328)
..|+++.+..+ +.+.++++|+.+.+++|+|.||++||+.. |.....+++++.+++++|++.
T Consensus 73 D~PLIvQf~~n-----------dp~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~-- 139 (358)
T KOG2335|consen 73 DRPLIVQFGGN-----------DPENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRAN-- 139 (358)
T ss_pred CCceEEEEcCC-----------CHHHHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhh--
Confidence 46777766532 57889999999999899999999999863 222456789999999999887
Q ss_pred hhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHH
Q psy5880 173 QLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEM 252 (328)
Q Consensus 173 ~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i 252 (328)
.+.||.+||+.+.+.++..++++++ +++|++.+++|+++... .|..+++ ..++.++.+
T Consensus 140 -----l~~pVs~KIRI~~d~~kTvd~ak~~--e~aG~~~ltVHGRtr~~-----------kg~~~~p----ad~~~i~~v 197 (358)
T KOG2335|consen 140 -----LNVPVSVKIRIFVDLEKTVDYAKML--EDAGVSLLTVHGRTREQ-----------KGLKTGP----ADWEAIKAV 197 (358)
T ss_pred -----cCCCeEEEEEecCcHHHHHHHHHHH--HhCCCcEEEEecccHHh-----------cCCCCCC----cCHHHHHHH
Confidence 6889999999999999999999999 99999999999998652 2333444 456889999
Q ss_pred HHHcCCCccEEEecCCCCHHHHHHHHH-hccCeeeehhHHhhcCchHH
Q psy5880 253 YKLTKGKLPIIGVGGVFSGKDAFEKIK-AGASLVQIYTSFVYHGPPLV 299 (328)
Q Consensus 253 ~~~~~~~ipvia~GGI~s~~da~~~l~-~GAd~V~vg~a~l~~gp~~~ 299 (328)
++.++. +|||++|+|.+.+|+..+++ +|||+||+|+++++ +|.+|
T Consensus 198 ~~~~~~-ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~-NPa~F 243 (358)
T KOG2335|consen 198 RENVPD-IPVIANGNILSLEDVERCLKYTGADGVMSARGLLY-NPALF 243 (358)
T ss_pred HHhCcC-CcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhc-Cchhh
Confidence 999874 99999999999999999998 99999999999985 59988
No 42
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.89 E-value=1.3e-21 Score=186.04 Aligned_cols=237 Identities=17% Similarity=0.168 Sum_probs=176.1
Q ss_pred hhHHHHHHHhHHHHHHH-h-hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-CCC------
Q psy5880 34 FARMRAWVLQFWLLGIL-K-FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-KPL------ 99 (328)
Q Consensus 34 ~~~v~~~~l~~y~~~~~-~-l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~~------ 99 (328)
++..++..+.+|..++. . |+.++.++... ...|+.++++++.+.+.|+++++++|+.++++. | +..
T Consensus 32 ~g~~t~~~~~~y~~rAg~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~ 111 (362)
T PRK10605 32 GDIPTPLMAEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEGGHIAVQLWHTGRISHASLQ 111 (362)
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECceeeCcccccCCCCCcccCHHHHHHHHHHHHHHHhCCCEEEEeccCCCCCCCcccC
Confidence 33568899999999884 2 34455555544 567888999999999999999999999998832 2 100
Q ss_pred ----C---cchh--------------------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEc---------
Q psy5880 100 ----P---PILV--------------------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVN--------- 142 (328)
Q Consensus 100 ----~---Pv~v--------------------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN--------- 142 (328)
. |.-+ ..|..|+..+ ..+.+++|+++|+++.+ |+|+||||
T Consensus 112 ~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~e---I~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~q 188 (362)
T PRK10605 112 PGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEE---IPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQ 188 (362)
T ss_pred CCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHH
Confidence 0 1111 0112333222 25779999999999988 89999997
Q ss_pred cCCCCCcchhhhhhh-------HHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC---------CChhh-HHHHHHHhccc
Q psy5880 143 VSSPNTANLRKLQAK-------DQLKHLLKTVVETRNQLAVKPLPPILVKIAPD---------LSLDE-KKDIADVVLDS 205 (328)
Q Consensus 143 ~scPn~~g~~~~~~~-------~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~---------~~~~~-~~~~a~~l~~~ 205 (328)
|.+|.+ |.|+++|+ +++.|++++||+++ + .+ +|.+|+++. .+.++ ..++++.| .
T Consensus 189 FLSp~~-N~RtDeYGGslENR~Rf~~Eiv~aVr~~v---g--~~-~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L--~ 259 (362)
T PRK10605 189 FLSPSS-NQRTDQYGGSVENRARLVLEVVDAGIAEW---G--AD-RIGIRISPLGTFNNVDNGPNEEADALYLIEQL--G 259 (362)
T ss_pred hcCCcC-CCCCCcCCCcHHHHHHHHHHHHHHHHHHc---C--CC-eEEEEECCccccccCCCCCCHHHHHHHHHHHH--H
Confidence 667777 56766554 68999999999985 2 34 599999863 34456 68999999 8
Q ss_pred cCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCe
Q psy5880 206 KCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASL 284 (328)
Q Consensus 206 ~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~ 284 (328)
+.|+|+|+++..... + +. +....+.+++++.++ +||+++|++ |++.+.++|+.| ||+
T Consensus 260 ~~giD~i~vs~~~~~-------------~---~~---~~~~~~~~~ik~~~~--~pv~~~G~~-~~~~ae~~i~~G~~D~ 317 (362)
T PRK10605 260 KRGIAYLHMSEPDWA-------------G---GE---PYSDAFREKVRARFH--GVIIGAGAY-TAEKAETLIGKGLIDA 317 (362)
T ss_pred HcCCCEEEecccccc-------------C---Cc---cccHHHHHHHHHHCC--CCEEEeCCC-CHHHHHHHHHcCCCCE
Confidence 999999998753110 0 11 122456688899887 899999996 899999999998 999
Q ss_pred eeehhHHhhcCchHHHHHHHH
Q psy5880 285 VQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 285 V~vg~a~l~~gp~~~~~i~~~ 305 (328)
|.+||+++. +|+|+++++++
T Consensus 318 V~~gR~~ia-dPd~~~k~~~g 337 (362)
T PRK10605 318 VAFGRDYIA-NPDLVARLQRK 337 (362)
T ss_pred EEECHHhhh-CccHHHHHhcC
Confidence 999999996 59999999875
No 43
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.89 E-value=8.9e-22 Score=187.97 Aligned_cols=240 Identities=16% Similarity=0.105 Sum_probs=171.7
Q ss_pred HHhHHHHHHHh----hcCccceEEec-cCCCC-CcCccCCCchHHHHHHHHHHHHHhhhh----cC-CC-----------
Q psy5880 41 VLQFWLLGILK----FGDVAHYFVVN-VSSPN-TANLRKLQAKDQLKHLLKTVVETRNQL----AL-KP----------- 98 (328)
Q Consensus 41 ~l~~y~~~~~~----l~~~~~~v~~n-~sspN-~~gl~~~~~~~~L~~ll~~v~~~~~~~----~~-~~----------- 98 (328)
++.+|..+++. |+.++.++... ...|+ ++|++++.+.++|+++++.||+++.++ .| +.
T Consensus 40 ~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~ 119 (370)
T cd02929 40 QAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETP 119 (370)
T ss_pred HHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCc
Confidence 44567777773 34556666555 34566 789999999999999999999999873 22 10
Q ss_pred CCcchh---------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC---------CCCcchhhhhh---
Q psy5880 99 LPPILV---------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS---------PNTANLRKLQA--- 156 (328)
Q Consensus 99 ~~Pv~v---------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc---------Pn~~g~~~~~~--- 156 (328)
..|.-+ ..|..|+.++ ..+.+++|+++|+++.+ ++|+||||..| |.+ +.|++++
T Consensus 120 ~~ps~~~~~~~~~~~~~p~~mt~~e---I~~ii~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~-N~RtD~yGGs 195 (370)
T cd02929 120 LGPSQLPSEFPTGGPVQAREMDKDD---IKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRY-NKRTDEYGGS 195 (370)
T ss_pred cCCCCCCCCccccCCCCCccCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccc-cCCccccCCC
Confidence 011111 1233343322 24678999999999987 89999999776 776 4554443
Q ss_pred ----hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC--------CChhhHHHHHHHhccccCCccEEEEecCCccchhh
Q psy5880 157 ----KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD--------LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEY 224 (328)
Q Consensus 157 ----~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~--------~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~ 224 (328)
.+++.|++++||+++ + .++||.+||++. .+.++..++++.+ .+. +|.+.++....... .
T Consensus 196 lenR~Rf~~eii~aIr~~v---g--~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l--~~~-~D~i~vs~g~~~~~-~ 266 (370)
T cd02929 196 LENRARFWRETLEDTKDAV---G--DDCAVATRFSVDELIGPGGIESEGEGVEFVEML--DEL-PDLWDVNVGDWAND-G 266 (370)
T ss_pred hHhhhHHHHHHHHHHHHHc---C--CCceEEEEecHHHhcCCCCCCCHHHHHHHHHHH--Hhh-CCEEEecCCCcccc-c
Confidence 378999999999984 3 578999999863 2456778899988 655 79998876432200 0
Q ss_pred hccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhhcCchHHHHHH
Q psy5880 225 LDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 225 ~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i~ 303 (328)
..+ ..+. ....++.++++++.++ +|||++|||++++++.++++.| ||+|++||+++. +|+|+++++
T Consensus 267 ~~~------~~~~----~~~~~~~~~~ik~~~~--~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la-dP~l~~k~~ 333 (370)
T cd02929 267 EDS------RFYP----EGHQEPYIKFVKQVTS--KPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA-DPFLPKKIR 333 (370)
T ss_pred ccc------ccCC----ccccHHHHHHHHHHCC--CCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh-CchHHHHHH
Confidence 000 0000 0123567788899887 9999999999999999999987 999999999996 599999998
Q ss_pred HHH
Q psy5880 304 SEL 306 (328)
Q Consensus 304 ~~l 306 (328)
++.
T Consensus 334 ~g~ 336 (370)
T cd02929 334 EGR 336 (370)
T ss_pred cCC
Confidence 764
No 44
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.88 E-value=7.6e-22 Score=185.93 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCc------chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCh-
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSL- 192 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~- 192 (328)
..++|+++|+.+.+ ++|+|+||++||++. |.....+++++.+++++++++ .++||.+|++.+++.
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~-------v~~pVsvKiR~g~~~~ 147 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDA-------VSIPVTVKHRIGIDDQ 147 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHH-------cCCceEEEEEeeeCCC
Confidence 45677777777766 699999999999863 223456789999999999887 578999999876432
Q ss_pred ---hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCC---cCchHHHHHHHHHHHHcCCCccEEEec
Q psy5880 193 ---DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGE---PLRNKSTELISEMYKLTKGKLPIIGVG 266 (328)
Q Consensus 193 ---~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~---~~~~~~l~~v~~i~~~~~~~ipvia~G 266 (328)
++..++++.+ .++|+++|++|+++.. ..|++|+ .+.|..+++++++++.+. ++|||++|
T Consensus 148 ~t~~~~~~~~~~l--~~aG~d~i~vh~Rt~~------------~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~iPVI~nG 212 (333)
T PRK11815 148 DSYEFLCDFVDTV--AEAGCDTFIVHARKAW------------LKGLSPKENREIPPLDYDRVYRLKRDFP-HLTIEING 212 (333)
T ss_pred cCHHHHHHHHHHH--HHhCCCEEEEcCCchh------------hcCCCccccccCCCcCHHHHHHHHHhCC-CCeEEEEC
Confidence 4567889999 9999999999976531 1234432 223455788899998862 39999999
Q ss_pred CCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHH
Q psy5880 267 GVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 267 GI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~ 304 (328)
||+|++|+.++++ |||+|||||+++. +|++++++.+
T Consensus 213 gI~s~eda~~~l~-~aDgVmIGRa~l~-nP~~~~~~~~ 248 (333)
T PRK11815 213 GIKTLEEAKEHLQ-HVDGVMIGRAAYH-NPYLLAEVDR 248 (333)
T ss_pred CcCCHHHHHHHHh-cCCEEEEcHHHHh-CCHHHHHHHH
Confidence 9999999999996 7999999999985 6999998864
No 45
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.87 E-value=3.5e-22 Score=186.43 Aligned_cols=152 Identities=22% Similarity=0.256 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCc------chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCC--
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLS-- 191 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~-- 191 (328)
..+.++++++.+.+ ++|+|+||++||... |...+.+++.+.++++++++. .++||.||++.+++
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~-------~~~pvsvKiR~g~~~~ 136 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKA-------VPIPVSVKIRLGWDDS 136 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH--------SSEEEEEEESECT--
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcc-------cccceEEecccccccc
Confidence 57888888888888 899999999999963 445678899999999999987 57999999999876
Q ss_pred hhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH
Q psy5880 192 LDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG 271 (328)
Q Consensus 192 ~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~ 271 (328)
.+++.++++.+ .++|+++|++|+|+.. ..++|+ ..++.++++++.++ +|||++|||.|+
T Consensus 137 ~~~~~~~~~~l--~~~G~~~i~vH~Rt~~-------------q~~~~~----a~w~~i~~i~~~~~--ipvi~NGdI~s~ 195 (309)
T PF01207_consen 137 PEETIEFARIL--EDAGVSAITVHGRTRK-------------QRYKGP----ADWEAIAEIKEALP--IPVIANGDIFSP 195 (309)
T ss_dssp CHHHHHHHHHH--HHTT--EEEEECS-TT-------------CCCTS-------HHHHHHCHHC-T--SEEEEESS--SH
T ss_pred hhHHHHHHHHh--hhcccceEEEecCchh-------------hcCCcc----cchHHHHHHhhccc--ceeEEcCccCCH
Confidence 56789999999 9999999999999764 235554 34688999999998 999999999999
Q ss_pred HHHHHHHH-hccCeeeehhHHhhcCchHHHH
Q psy5880 272 KDAFEKIK-AGASLVQIYTSFVYHGPPLVTR 301 (328)
Q Consensus 272 ~da~~~l~-~GAd~V~vg~a~l~~gp~~~~~ 301 (328)
+|+.++++ +|||.||+||+++ .+|++++.
T Consensus 196 ~d~~~~~~~tg~dgvMigRgal-~nP~lf~~ 225 (309)
T PF01207_consen 196 EDAERMLEQTGADGVMIGRGAL-GNPWLFRE 225 (309)
T ss_dssp HHHHHHCCCH-SSEEEESHHHC-C-CCHHCH
T ss_pred HHHHHHHHhcCCcEEEEchhhh-hcCHHhhh
Confidence 99999997 6999999999998 46999984
No 46
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.86 E-value=6.1e-21 Score=171.05 Aligned_cols=156 Identities=21% Similarity=0.254 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCc------chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChh
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLD 193 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~ 193 (328)
..++|+++++++.+ ++|+||||++||++. |.....+++++.+++++|++. ..+|+.+|++.+++.+
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-------~~~~v~vk~r~~~~~~ 137 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-------VPIPVTVKIRLGWDDE 137 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-------cCCCEEEEEeeccCCc
Confidence 35677777777776 799999999999962 111234678899999999887 4589999999877654
Q ss_pred -hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHH
Q psy5880 194 -EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK 272 (328)
Q Consensus 194 -~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~ 272 (328)
+..++++.+ .++|+|+|++++++.. ++++++ ..++.++++++.++ +||+++|||.|++
T Consensus 138 ~~~~~~~~~l--~~~Gvd~i~v~~~~~~-------------~~~~~~----~~~~~~~~i~~~~~--ipvi~~Ggi~~~~ 196 (231)
T cd02801 138 EETLELAKAL--EDAGASALTVHGRTRE-------------QRYSGP----ADWDYIAEIKEAVS--IPVIANGDIFSLE 196 (231)
T ss_pred hHHHHHHHHH--HHhCCCEEEECCCCHH-------------HcCCCC----CCHHHHHHHHhCCC--CeEEEeCCCCCHH
Confidence 788999999 8999999999886532 112222 23678888998876 9999999999999
Q ss_pred HHHHHHHh-ccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 273 DAFEKIKA-GASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 273 da~~~l~~-GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
|+.++++. |||+|++||+++. +|+|++++.+.
T Consensus 197 d~~~~l~~~gad~V~igr~~l~-~P~~~~~~~~~ 229 (231)
T cd02801 197 DALRCLEQTGVDGVMIGRGALG-NPWLFREIKEL 229 (231)
T ss_pred HHHHHHHhcCCCEEEEcHHhHh-CCHHHHhhhhc
Confidence 99999997 7999999999985 69999998653
No 47
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.82 E-value=3.8e-19 Score=167.64 Aligned_cols=186 Identities=16% Similarity=0.159 Sum_probs=128.8
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhh-hhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKL-QAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~-~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
++++.++++.++ +|++++|+.|++....... .+.+...+.+++|++. .++||+||+.+.-. ..+.++
T Consensus 130 ~~~~~~~i~~i~--adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~-------~~vPVivK~~g~g~---~~~~a~ 197 (333)
T TIGR02151 130 PEEAQEAIDMIE--ADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQ-------LSVPVIVKEVGFGI---SKEVAK 197 (333)
T ss_pred HHHHHHHHHHhc--CCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHh-------cCCCEEEEecCCCC---CHHHHH
Confidence 677777787776 9999999998875211111 1123345666666665 68999999986532 357789
Q ss_pred HhccccCCccEEEEecCCccc---hhhhccccccccCCCCCCcCchHHHHHHHHHHH-HcCCCccEEEecCCCCHHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDR---YEYLDARYKEETGGLSGEPLRNKSTELISEMYK-LTKGKLPIIGVGGVFSGKDAFE 276 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~---~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~-~~~~~ipvia~GGI~s~~da~~ 276 (328)
.+ +++|+|+|+++++.... .+..+.. ....+.+--.+-. ...+.+.++++ .+ ++|||++|||++++|+.+
T Consensus 198 ~L--~~aGvd~I~Vsg~gGt~~~~ie~~r~~-~~~~~~~~~~~g~-~t~~~l~~~~~~~~--~ipVIasGGI~~~~di~k 271 (333)
T TIGR02151 198 LL--ADAGVSAIDVAGAGGTSWAQVENYRAK-GSNLASFFNDWGI-PTAASLLEVRSDAP--DAPIIASGGLRTGLDVAK 271 (333)
T ss_pred HH--HHcCCCEEEECCCCCCcccchhhhccc-ccccchhhhcccH-hHHHHHHHHHhcCC--CCeEEEECCCCCHHHHHH
Confidence 99 99999999999864210 1111000 0000111011111 12344555555 33 499999999999999999
Q ss_pred HHHhccCeeeehhHHhh----cCch----HHHHHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 277 KIKAGASLVQIYTSFVY----HGPP----LVTRIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 277 ~l~~GAd~V~vg~a~l~----~gp~----~~~~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
++.+|||+|++||+++. .||+ ++..+.++|+.||...|++|++||++..
T Consensus 272 aLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~el~~~~ 328 (333)
T TIGR02151 272 AIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIAELKKVP 328 (333)
T ss_pred HHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHccCC
Confidence 99999999999999984 4676 6888899999999999999999998753
No 48
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.82 E-value=4.8e-19 Score=166.46 Aligned_cols=186 Identities=17% Similarity=0.187 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhh-hhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRK-LQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~-~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
.++++.+.++.++ +|++++|+.||+...... ..+.+...+.++.+++. .++||++|+.+.-. ..+.+
T Consensus 128 ~~~~~~~~i~~~~--adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~-------~~vPVivK~~g~g~---s~~~a 195 (326)
T cd02811 128 GVEEARRAVEMIE--ADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKA-------LSVPVIVKEVGFGI---SRETA 195 (326)
T ss_pred CHHHHHHHHHhcC--CCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHh-------cCCCEEEEecCCCC---CHHHH
Confidence 4667777777776 999999998877421111 11222344555555554 68999999976522 24678
Q ss_pred HHhccccCCccEEEEecCCcc---chhhhcccccc-ccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVD---RYEYLDARYKE-ETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAF 275 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~---~~~~~~~~~~~-~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~ 275 (328)
+.+ .++|+|+|+++|.... ..+..+..... +.+.+.-.+-. .....+.++++.+. ++|||++|||+++.|+.
T Consensus 196 ~~l--~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~-~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~ 271 (326)
T cd02811 196 KRL--ADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGI-PTAASLLEVRSALP-DLPLIASGGIRNGLDIA 271 (326)
T ss_pred HHH--HHcCCCEEEECCCCCCcccccccccccccccccccccccccc-cHHHHHHHHHHHcC-CCcEEEECCCCCHHHHH
Confidence 888 8999999999875221 00000000000 00010000111 13456667777663 49999999999999999
Q ss_pred HHHHhccCeeeehhHHhhc---Cc----hHHHHHHHHHHHHHHHhCCCCHHHHh
Q psy5880 276 EKIKAGASLVQIYTSFVYH---GP----PLVTRIKSELEELLQKEGYNSVSQAV 322 (328)
Q Consensus 276 ~~l~~GAd~V~vg~a~l~~---gp----~~~~~i~~~l~~~m~~~g~~si~e~~ 322 (328)
+++.+|||+|++||++++. |+ .+++.+.++|+.||...|++|++|++
T Consensus 272 kal~lGAd~V~i~~~~L~~~~~g~~~~~~~i~~~~~el~~~m~~~G~~si~el~ 325 (326)
T cd02811 272 KALALGADLVGMAGPFLKAALEGEEAVIETIEQIIEELRTAMFLTGAKNLAELK 325 (326)
T ss_pred HHHHhCCCEEEEcHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhc
Confidence 9999999999999988643 44 48999999999999999999999997
No 49
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.82 E-value=8.4e-19 Score=163.21 Aligned_cols=162 Identities=20% Similarity=0.260 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+...+.++.++..+ +++|++|++||+. +.+ ...++++++++. .++||++|... + .+.+
T Consensus 129 ~~~~~~i~~~~~~g--~~~i~l~~~~p~~-~~~------~~~~~i~~l~~~-------~~~pvivK~v~--s----~~~a 186 (299)
T cd02809 129 EITEDLLRRAEAAG--YKALVLTVDTPVL-GRR------LTWDDLAWLRSQ-------WKGPLILKGIL--T----PEDA 186 (299)
T ss_pred HHHHHHHHHHHHcC--CCEEEEecCCCCC-CCC------CCHHHHHHHHHh-------cCCCEEEeecC--C----HHHH
Confidence 34455555555555 9999999999985 322 234567777765 57899999642 2 3457
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .++|+|+|+++|+... ....| +..+..+.++++.++.++|||++|||+++.|+.+++.
T Consensus 187 ~~a--~~~G~d~I~v~~~gG~-------------~~~~g----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~ 247 (299)
T cd02809 187 LRA--VDAGADGIVVSNHGGR-------------QLDGA----PATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA 247 (299)
T ss_pred HHH--HHCCCCEEEEcCCCCC-------------CCCCC----cCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH
Confidence 888 8999999999986421 01122 2346788888887754699999999999999999999
Q ss_pred hccCeeeehhHHhhc----C----chHHHHHHHHHHHHHHHhCCCCHHHHh
Q psy5880 280 AGASLVQIYTSFVYH----G----PPLVTRIKSELEELLQKEGYNSVSQAV 322 (328)
Q Consensus 280 ~GAd~V~vg~a~l~~----g----p~~~~~i~~~l~~~m~~~g~~si~e~~ 322 (328)
+|||+|++||++++. | ..+++.+.++++.+|...|++|++||+
T Consensus 248 lGAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~~m~~~G~~~i~~l~ 298 (299)
T cd02809 248 LGADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASLADLD 298 (299)
T ss_pred cCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhC
Confidence 999999999999853 1 258899999999999999999999986
No 50
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.81 E-value=1e-18 Score=165.59 Aligned_cols=187 Identities=17% Similarity=0.171 Sum_probs=130.4
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhh-hhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRK-LQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~-~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++.++++.++ +|++++|+.||+.-.... ..+...+.+.++++++. .++||++|+...-. ..+.++
T Consensus 137 ~~~~~~~~~~~~--adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~-------~~vPVivK~~g~g~---s~~~a~ 204 (352)
T PRK05437 137 VEEAQRAVEMIE--ADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSA-------LPVPVIVKEVGFGI---SKETAK 204 (352)
T ss_pred HHHHHHHHHhcC--CCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHh-------hCCCEEEEeCCCCC---cHHHHH
Confidence 566777777776 999999999887521111 11223355666666665 58999999986522 256788
Q ss_pred HhccccCCccEEEEecCCcc---chhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVD---RYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~---~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~ 277 (328)
.+ .++|+|+|+++|+... ..+..+.... ....+...+-.| ....+.++++... ++|||++|||+++.|+.++
T Consensus 205 ~l--~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~-~~~~~~~~~g~p-t~~~l~~i~~~~~-~ipvia~GGI~~~~dv~k~ 279 (352)
T PRK05437 205 RL--ADAGVKAIDVAGAGGTSWAAIENYRARDD-RLASYFADWGIP-TAQSLLEARSLLP-DLPIIASGGIRNGLDIAKA 279 (352)
T ss_pred HH--HHcCCCEEEECCCCCCCccchhhhhhhcc-ccccccccccCC-HHHHHHHHHHhcC-CCeEEEECCCCCHHHHHHH
Confidence 88 8999999999886421 0111000000 000011011112 3456677777641 3999999999999999999
Q ss_pred HHhccCeeeehhHHhhc----Cch----HHHHHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 278 IKAGASLVQIYTSFVYH----GPP----LVTRIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 278 l~~GAd~V~vg~a~l~~----gp~----~~~~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
+.+|||+|++||++++. |++ +++.+.++++.+|...|+++++||++.-
T Consensus 280 l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~ 335 (352)
T PRK05437 280 LALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRKVP 335 (352)
T ss_pred HHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCCC
Confidence 99999999999998854 565 8999999999999999999999998854
No 51
>KOG1436|consensus
Probab=99.70 E-value=1.5e-16 Score=143.03 Aligned_cols=106 Identities=42% Similarity=0.587 Sum_probs=96.2
Q ss_pred ccccCCCCcCChhhHHHHHHHhHHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCc
Q psy5880 22 WGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPP 101 (328)
Q Consensus 22 ~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~P 101 (328)
||+|+|+||.++|... ||.++++-+++++||+++|+|||||+|+|++|....|++++..++.++.++..+..+|
T Consensus 181 lGVnlgknk~s~d~~~------dy~~gV~~~g~~adylviNvSsPNtpGlr~lq~k~~L~~ll~~v~~a~~~~~~~~~~p 254 (398)
T KOG1436|consen 181 LGVNLGKNKTSEDAIL------DYVEGVRVFGPFADYLVINVSSPNTPGLRSLQKKSDLRKLLTKVVQARDKLPLGKKPP 254 (398)
T ss_pred ceeeeccccCCcchHH------HHHHHhhhcccccceEEEeccCCCCcchhhhhhHHHHHHHHHHHHHHHhccccCCCCc
Confidence 9999999999988777 6999999999999999999999999999999999999999999999999877656679
Q ss_pred chhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEc
Q psy5880 102 ILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVN 142 (328)
Q Consensus 102 v~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN 142 (328)
+++|+.||++ .++..|++.++++.. .|++.+|
T Consensus 255 vl~kiapDL~-------~~el~dia~v~kk~~--idg~Ivs 286 (398)
T KOG1436|consen 255 VLVKIAPDLS-------EKELKDIALVVKKLN--IDGLIVS 286 (398)
T ss_pred eEEEeccchh-------HHHHHHHHHHHHHhC--ccceeec
Confidence 9999999985 567899999998777 7887765
No 52
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.69 E-value=1.2e-15 Score=143.74 Aligned_cols=171 Identities=21% Similarity=0.225 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcc----hhh----------------------------hhhhHHHHHHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTAN----LRK----------------------------LQAKDQLKHLLKT 166 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g----~~~----------------------------~~~~~~~~~i~~~ 166 (328)
.+...++++.++.++ +++|.+++..|.... .|. ..++....+.++.
T Consensus 130 ~~~~~~l~~ra~~ag--~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 207 (344)
T cd02922 130 RTKTEELLKRAEKLG--AKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKW 207 (344)
T ss_pred HHHHHHHHHHHHHcC--CCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHH
Confidence 456788888888887 999999888874310 000 0011233455666
Q ss_pred HHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCch-HH
Q psy5880 167 VVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRN-KS 245 (328)
Q Consensus 167 v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~-~~ 245 (328)
+++. .+.||++|-.. + .+-++.+ .++|+|+|+++|+.... +.+ ...+ ..
T Consensus 208 l~~~-------~~~PvivKgv~--~----~~dA~~a--~~~G~d~I~vsnhgG~~--------------~d~-~~~~~~~ 257 (344)
T cd02922 208 LRKH-------TKLPIVLKGVQ--T----VEDAVLA--AEYGVDGIVLSNHGGRQ--------------LDT-APAPIEV 257 (344)
T ss_pred HHHh-------cCCcEEEEcCC--C----HHHHHHH--HHcCCCEEEEECCCccc--------------CCC-CCCHHHH
Confidence 6655 68999999432 2 3446777 89999999999965221 111 1111 23
Q ss_pred HHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCch---------HHHHHHHHHHHHHHHhCCC
Q psy5880 246 TELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPP---------LVTRIKSELEELLQKEGYN 316 (328)
Q Consensus 246 l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~---------~~~~i~~~l~~~m~~~g~~ 316 (328)
|..++...+.+.+++|||+.|||+++.|+.++|.+||++|++||++++ ++. +++.+.++|+.+|...|++
T Consensus 258 L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~-~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~ 336 (344)
T cd02922 258 LLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLY-ALSAYGEEGVEKAIQILKDEIETTMRLLGVT 336 (344)
T ss_pred HHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH-HHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344444333444469999999999999999999999999999999986 355 7899999999999999999
Q ss_pred CHHHHh
Q psy5880 317 SVSQAV 322 (328)
Q Consensus 317 si~e~~ 322 (328)
+++||.
T Consensus 337 ~i~~l~ 342 (344)
T cd02922 337 SLDQLG 342 (344)
T ss_pred CHHHhC
Confidence 999985
No 53
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.67 E-value=3.6e-15 Score=140.57 Aligned_cols=170 Identities=20% Similarity=0.267 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhh--hh--------------------------------hhHHHHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRK--LQ--------------------------------AKDQLKHLL 164 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~--~~--------------------------------~~~~~~~i~ 164 (328)
.+...++++.++.++ +.+|.+.+-+|... .|. .. ++...-+.+
T Consensus 137 ~~~~~~ll~rA~~aG--~~alvlTvD~p~~g-~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 213 (351)
T cd04737 137 DGFNRSLLDRAKAAG--AKAIILTADATVGG-NREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADI 213 (351)
T ss_pred HHHHHHHHHHHHHcC--CCEEEEecCCCCCC-cchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHH
Confidence 356677777777776 78887766555431 110 00 001123455
Q ss_pred HHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchH
Q psy5880 165 KTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNK 244 (328)
Q Consensus 165 ~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~ 244 (328)
+++++. +++||++|.- .+ .+.++.+ .++|+|+|+++|+... . -.++ |.
T Consensus 214 ~~lr~~-------~~~PvivKgv--~~----~~dA~~a--~~~G~d~I~vsnhGGr-~------------ld~~----~~ 261 (351)
T cd04737 214 EFIAKI-------SGLPVIVKGI--QS----PEDADVA--INAGADGIWVSNHGGR-Q------------LDGG----PA 261 (351)
T ss_pred HHHHHH-------hCCcEEEecC--CC----HHHHHHH--HHcCCCEEEEeCCCCc-c------------CCCC----ch
Confidence 566665 6899999942 22 2456778 8999999999986421 1 0122 23
Q ss_pred HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCc---------hHHHHHHHHHHHHHHHhCC
Q psy5880 245 STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGP---------PLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp---------~~~~~i~~~l~~~m~~~g~ 315 (328)
.++.+.++++.+.+++|||+.|||+++.|+.++|.+||++|++||++++ +. .+++.+.++++.+|...|+
T Consensus 262 ~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~-~la~~G~~gv~~~l~~l~~El~~~m~l~G~ 340 (351)
T cd04737 262 SFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLY-GLALGGAQGVASVLEHLNKELKIVMQLAGT 340 (351)
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH-HHhhchHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5677888888886679999999999999999999999999999999986 33 6789999999999999999
Q ss_pred CCHHHHhcc
Q psy5880 316 NSVSQAVGA 324 (328)
Q Consensus 316 ~si~e~~G~ 324 (328)
+|++|+++.
T Consensus 341 ~~i~el~~~ 349 (351)
T cd04737 341 RTIEDVKRT 349 (351)
T ss_pred CCHHHhCCC
Confidence 999999874
No 54
>PLN02826 dihydroorotate dehydrogenase
Probab=99.64 E-value=8.4e-15 Score=140.77 Aligned_cols=170 Identities=29% Similarity=0.385 Sum_probs=116.9
Q ss_pred CcccccCCCCcCChhhHHHHHHHhHHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcC--C
Q psy5880 20 GEWGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAL--K 97 (328)
Q Consensus 20 ~~~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~--~ 97 (328)
+.+|+|+|+||.+ ++.+ +||.++++++..++||+++|+||||++|++.+++++.+.+++..|++...++.. .
T Consensus 187 ~~lgvnIg~nk~~-~~~~-----~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~ 260 (409)
T PLN02826 187 GILGVNLGKNKTS-EDAA-----ADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEE 260 (409)
T ss_pred ceEEEEeccCCCC-cccH-----HHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccc
Confidence 4799999999954 3334 489999999999999999999999999999999999999999999887654421 1
Q ss_pred CCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEE-ccC--CCC-------Cc--c-hhhhhhhHHHHHHH
Q psy5880 98 PLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVV-NVS--SPN-------TA--N-LRKLQAKDQLKHLL 164 (328)
Q Consensus 98 ~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~iei-N~s--cPn-------~~--g-~~~~~~~~~~~~i~ 164 (328)
..+|+++|++|+++ .+.+.++++.+.+.+ +|+|.+ |.. .|. .. | ..-..-.....+++
T Consensus 261 ~~~Pv~vKlaPdl~-------~~di~~ia~~a~~~G--~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v 331 (409)
T PLN02826 261 GPPPLLVKIAPDLS-------KEDLEDIAAVALALG--IDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVL 331 (409)
T ss_pred cCCceEEecCCCCC-------HHHHHHHHHHHHHcC--CCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHH
Confidence 24799999999874 456888888888877 888754 532 121 00 0 00000012344455
Q ss_pred HHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEec
Q psy5880 165 KTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 165 ~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
..+.+. ++ .++||+.== .-.+ ..++.+.+ .+||+.+-+..
T Consensus 332 ~~l~~~---~~--~~ipIIgvG-GI~s---g~Da~e~i---~AGAs~VQv~T 371 (409)
T PLN02826 332 REMYRL---TR--GKIPLVGCG-GVSS---GEDAYKKI---RAGASLVQLYT 371 (409)
T ss_pred HHHHHH---hC--CCCcEEEEC-CCCC---HHHHHHHH---HhCCCeeeecH
Confidence 555444 22 367876532 2233 34455555 79999997654
No 55
>PLN02535 glycolate oxidase
Probab=99.60 E-value=4.8e-14 Score=133.23 Aligned_cols=172 Identities=23% Similarity=0.321 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCc----chhh---------hh-----------------------hhHHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTA----NLRK---------LQ-----------------------AKDQLKH 162 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~----g~~~---------~~-----------------------~~~~~~~ 162 (328)
.+...++++.|+.++ +.+|.+.+-+|... ..|. .. ++...-+
T Consensus 136 r~~~~~ll~RA~~aG--~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~ 213 (364)
T PLN02535 136 RDIAAQLVQRAEKNG--YKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWK 213 (364)
T ss_pred HHHHHHHHHHHHHcC--CCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHH
Confidence 456778888888887 88888876666541 0110 00 0001113
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCc
Q psy5880 163 LLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLR 242 (328)
Q Consensus 163 i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~ 242 (328)
-++.+++. ++.||++|--. +. +-++.+ .++|+|+|+++|+... . + + ..
T Consensus 214 ~i~~lr~~-------~~~PvivKgV~--~~----~dA~~a--~~~GvD~I~vsn~GGr-~-------------~-d--~~ 261 (364)
T PLN02535 214 DIEWLRSI-------TNLPILIKGVL--TR----EDAIKA--VEVGVAGIIVSNHGAR-Q-------------L-D--YS 261 (364)
T ss_pred HHHHHHhc-------cCCCEEEecCC--CH----HHHHHH--HhcCCCEEEEeCCCcC-C-------------C-C--CC
Confidence 33444443 68999999542 22 225677 8999999999986421 0 0 1 11
Q ss_pred hHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCch---------HHHHHHHHHHHHHHHh
Q psy5880 243 NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPP---------LVTRIKSELEELLQKE 313 (328)
Q Consensus 243 ~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~---------~~~~i~~~l~~~m~~~ 313 (328)
+.++..+.++++.+..++|||+.|||+++.|+.++|.+||++|++||++++ +.. .++.+.++++..|...
T Consensus 262 ~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~-~l~~~g~~gv~~~l~~l~~el~~~m~l~ 340 (364)
T PLN02535 262 PATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIY-GLAAKGEDGVRKVIEMLKDELEITMALS 340 (364)
T ss_pred hHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHh-hhhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 445788888888775569999999999999999999999999999999986 343 6888899999999999
Q ss_pred CCCCHHHHhccc
Q psy5880 314 GYNSVSQAVGAA 325 (328)
Q Consensus 314 g~~si~e~~G~~ 325 (328)
|+++++|+++..
T Consensus 341 G~~~i~el~~~~ 352 (364)
T PLN02535 341 GCPSVKDITRSH 352 (364)
T ss_pred CCCCHHHhhhhh
Confidence 999999998743
No 56
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.57 E-value=1.6e-13 Score=129.78 Aligned_cols=170 Identities=19% Similarity=0.280 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhh---------------------------h------hhhHHHHHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRK---------------------------L------QAKDQLKHLLKT 166 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~---------------------------~------~~~~~~~~i~~~ 166 (328)
+...++++.++.++ +.+|.+.+-+|... .|. . ..+...-+-+++
T Consensus 146 ~~~~~li~RA~~aG--~~alvlTvD~p~~g-~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~ 222 (367)
T TIGR02708 146 GINRDIMDRVKADG--AKAIVLTADATVGG-NREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEE 222 (367)
T ss_pred HHHHHHHHHHHHcC--CCEEEEecCCCCCC-cchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHH
Confidence 45578888888877 88888876665431 110 0 000111234555
Q ss_pred HHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHH
Q psy5880 167 VVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKST 246 (328)
Q Consensus 167 v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l 246 (328)
+++. .++||+||--. + .+.++.+ .++|+|+|.++|+... ...+++ ..+
T Consensus 223 l~~~-------~~~PvivKGv~--~----~eda~~a--~~~Gvd~I~VS~HGGr-------------q~~~~~----a~~ 270 (367)
T TIGR02708 223 IAGY-------SGLPVYVKGPQ--C----PEDADRA--LKAGASGIWVTNHGGR-------------QLDGGP----AAF 270 (367)
T ss_pred HHHh-------cCCCEEEeCCC--C----HHHHHHH--HHcCcCEEEECCcCcc-------------CCCCCC----cHH
Confidence 6554 68999999322 2 4567778 8999999999986532 112222 345
Q ss_pred HHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc----Cc----hHHHHHHHHHHHHHHHhCCCCH
Q psy5880 247 ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH----GP----PLVTRIKSELEELLQKEGYNSV 318 (328)
Q Consensus 247 ~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~----gp----~~~~~i~~~l~~~m~~~g~~si 318 (328)
+.+.++++.+++++|||++|||+++.|+.++|.+||++|++||++++. |. .+++.++.+++..|...|++++
T Consensus 271 ~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~~i 350 (367)
T TIGR02708 271 DSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTI 350 (367)
T ss_pred HHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 778888888866799999999999999999999999999999998853 32 4678888999999999999999
Q ss_pred HHHhcc
Q psy5880 319 SQAVGA 324 (328)
Q Consensus 319 ~e~~G~ 324 (328)
+||+..
T Consensus 351 ~eL~~~ 356 (367)
T TIGR02708 351 EDVKGF 356 (367)
T ss_pred HHhCcc
Confidence 999764
No 57
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.55 E-value=2e-13 Score=125.97 Aligned_cols=103 Identities=23% Similarity=0.269 Sum_probs=85.6
Q ss_pred hcccCCcccccCCCCcCChh-hHHHHHHHhHHHHHHHhhcCccceEEeccCCCCCcCccCCC-chHHHHHHHHHHHHHhh
Q psy5880 15 RVFRSGEWGCTPTHNMLSSF-ARMRAWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQ-AKDQLKHLLKTVVETRN 92 (328)
Q Consensus 15 ~~~~~~~~g~~~~~~~~~~~-~~v~~~~l~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~-~~~~L~~ll~~v~~~~~ 92 (328)
...+....|+|+++|+.+.. .... ||..++++.+. +||+++|+||||++|++++| +++.+.+++++|++..
T Consensus 88 ~~~~~~~~~~~i~~~~~~~~~~~~~-----d~~~~~~~~~~-ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~- 160 (310)
T COG0167 88 AKYEGKPIGVNIGKNKGGPSEEAWA-----DYARLLEEAGD-ADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAAT- 160 (310)
T ss_pred hhhccCCcCcceEEecCCCcHHHHH-----HHHHHHHhcCC-CCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcc-
Confidence 33334469999999998743 3343 79999999999 99999999999999999999 9999999999999886
Q ss_pred hhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEE
Q psy5880 93 QLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVV 141 (328)
Q Consensus 93 ~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~iei 141 (328)
.+|+++|++|+ .+++.++++.+.+++ +|++.+
T Consensus 161 ------~~Pv~vKl~P~---------~~di~~iA~~~~~~g--~Dgl~~ 192 (310)
T COG0167 161 ------KVPVFVKLAPN---------ITDIDEIAKAAEEAG--ADGLIA 192 (310)
T ss_pred ------cCceEEEeCCC---------HHHHHHHHHHHHHcC--CcEEEE
Confidence 37999999994 346788888888877 888754
No 58
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.49 E-value=7.2e-13 Score=125.76 Aligned_cols=131 Identities=25% Similarity=0.312 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCc
Q psy5880 163 LLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLR 242 (328)
Q Consensus 163 i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~ 242 (328)
-++.+++. .+.||+||-. ++.+ -++.+ .++|+++|+++|+.... +.+ -
T Consensus 216 ~i~~~~~~-------~~~pvivKgv--~~~~----da~~~--~~~G~~~i~vs~hGGr~--------------~d~---~ 263 (356)
T PF01070_consen 216 DIEWIRKQ-------WKLPVIVKGV--LSPE----DAKRA--VDAGVDGIDVSNHGGRQ--------------LDW---G 263 (356)
T ss_dssp HHHHHHHH-------CSSEEEEEEE---SHH----HHHHH--HHTT-SEEEEESGTGTS--------------STT---S
T ss_pred HHHHHhcc-------cCCceEEEec--ccHH----HHHHH--HhcCCCEEEecCCCccc--------------Ccc---c
Confidence 35555554 7899999976 4432 35667 79999999999864320 100 1
Q ss_pred hHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc----Cc----hHHHHHHHHHHHHHHHhC
Q psy5880 243 NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH----GP----PLVTRIKSELEELLQKEG 314 (328)
Q Consensus 243 ~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~----gp----~~~~~i~~~l~~~m~~~g 314 (328)
+.++..+.++++.++.++|||+.|||+++.|+.+++.+||++|.+|+++++. |. .+++.+.++++..|...|
T Consensus 264 ~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g~~gv~~~~~~l~~el~~~m~l~G 343 (356)
T PF01070_consen 264 PPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGGEEGVERVLEILKEELKRAMFLLG 343 (356)
T ss_dssp -BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHC
Confidence 2356778888888877899999999999999999999999999999999852 22 357888899999999999
Q ss_pred CCCHHHHhccc
Q psy5880 315 YNSVSQAVGAA 325 (328)
Q Consensus 315 ~~si~e~~G~~ 325 (328)
+++++||+...
T Consensus 344 ~~~~~~l~~~~ 354 (356)
T PF01070_consen 344 ARSIAELRRSL 354 (356)
T ss_dssp -SBGGGHTGGG
T ss_pred CCCHHHhCHHh
Confidence 99999998754
No 59
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.49 E-value=1.1e-12 Score=126.24 Aligned_cols=153 Identities=20% Similarity=0.214 Sum_probs=106.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcCCCC-CCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccc
Q psy5880 154 LQAKDQLKHLLKTVVETRNQLAVKPL-PPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEE 232 (328)
Q Consensus 154 ~~~~~~~~~i~~~v~~~~~~~~~~~~-~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~ 232 (328)
..+++.+.++++.+|+. .+ +||++|+....+ ..++++.+ ...|+|+|+++|+..+.- ..+. .
T Consensus 195 ~~~~~~l~~~I~~lr~~-------~~~~pV~vK~~~~~~---~~~~a~~~--~~~g~D~I~VsG~~Ggtg--~~~~---~ 257 (392)
T cd02808 195 IYSIEDLAQLIEDLREA-------TGGKPIGVKLVAGHG---EGDIAAGV--AAAGADFITIDGAEGGTG--AAPL---T 257 (392)
T ss_pred CCCHHHHHHHHHHHHHh-------CCCceEEEEECCCCC---HHHHHHHH--HHcCCCEEEEeCCCCCCC--CCcc---c
Confidence 34556788888888887 45 999999998754 45677777 677799999998753210 0000 0
Q ss_pred cCCCCCCcCchHHHHHHHHHHHHc--CCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc----------------
Q psy5880 233 TGGLSGEPLRNKSTELISEMYKLT--KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH---------------- 294 (328)
Q Consensus 233 ~gg~sg~~~~~~~l~~v~~i~~~~--~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~---------------- 294 (328)
.....|.+. ...+..+.+..... +.++|||++|||.|+.|+.+++.+|||+|++||++|+-
T Consensus 258 ~~~~~g~pt-~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~ 336 (392)
T cd02808 258 FIDHVGLPT-ELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPV 336 (392)
T ss_pred ccccCCccH-HHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCc
Confidence 000011111 12333333332222 23599999999999999999999999999999999841
Q ss_pred -----------------Cc----hHHHHHHHHHHHHHHHhCCCCHHHHhcc
Q psy5880 295 -----------------GP----PLVTRIKSELEELLQKEGYNSVSQAVGA 324 (328)
Q Consensus 295 -----------------gp----~~~~~i~~~l~~~m~~~g~~si~e~~G~ 324 (328)
+. .+++.+.++++..|...|++|++++...
T Consensus 337 Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~~ 387 (392)
T cd02808 337 GVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELLGRS 387 (392)
T ss_pred ccccCChHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCCChHHCCHH
Confidence 11 3578889999999999999999998654
No 60
>PLN02979 glycolate oxidase
Probab=99.47 E-value=2.7e-12 Score=120.44 Aligned_cols=170 Identities=24% Similarity=0.333 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchh-----------------hhh-----------------------hhH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLR-----------------KLQ-----------------------AKD 158 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~-----------------~~~-----------------------~~~ 158 (328)
.+...++++.|+.++ +.++.+.+-+|.. |.| ... ++.
T Consensus 133 r~~~~~ll~RA~~aG--~~AlvlTVD~pv~-G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (366)
T PLN02979 133 RNVVEQLVRRAERAG--FKAIALTVDTPRL-GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRT 209 (366)
T ss_pred HHHHHHHHHHHHHcC--CCEEEEEecCCCC-CCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCC
Confidence 456778888888887 8888887666654 111 000 000
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCC
Q psy5880 159 QLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG 238 (328)
Q Consensus 159 ~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg 238 (328)
..-+-++++++. ++.||++|--. + .+-++.+ .++|+|+|+++|+.... +.
T Consensus 210 ltW~dl~wlr~~-------~~~PvivKgV~--~----~~dA~~a--~~~Gvd~I~VsnhGGrq--------------ld- 259 (366)
T PLN02979 210 LSWKDVQWLQTI-------TKLPILVKGVL--T----GEDARIA--IQAGAAGIIVSNHGARQ--------------LD- 259 (366)
T ss_pred CCHHHHHHHHhc-------cCCCEEeecCC--C----HHHHHHH--HhcCCCEEEECCCCcCC--------------CC-
Confidence 011334555554 78999999764 2 2345667 89999999999874320 11
Q ss_pred CcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc----Cc----hHHHHHHHHHHHHH
Q psy5880 239 EPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH----GP----PLVTRIKSELEELL 310 (328)
Q Consensus 239 ~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~----gp----~~~~~i~~~l~~~m 310 (328)
..|.++..+.++++.+.+++|||+.|||+++.|+.++|.+||++|++||++++. |. .+++.+.+++...|
T Consensus 260 --~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m 337 (366)
T PLN02979 260 --YVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTM 337 (366)
T ss_pred --CchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 113456778888887766799999999999999999999999999999999852 33 36788888999999
Q ss_pred HHhCCCCHHHHhc
Q psy5880 311 QKEGYNSVSQAVG 323 (328)
Q Consensus 311 ~~~g~~si~e~~G 323 (328)
...|+++++|+..
T Consensus 338 ~l~G~~~i~el~~ 350 (366)
T PLN02979 338 ALSGCRSLKEISR 350 (366)
T ss_pred HHhCCCCHHHhCh
Confidence 9999999999965
No 61
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.45 E-value=5.2e-12 Score=119.39 Aligned_cols=121 Identities=27% Similarity=0.393 Sum_probs=96.7
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
++.||++|--. + .+-++.+ .++|+|+|+++|+.... +.+ .|.++..+.++++.+.
T Consensus 223 ~~~PiivKgV~--~----~~dA~~a--~~~Gvd~I~VsnhGGrq--------------ld~---~~~t~~~L~ei~~av~ 277 (367)
T PLN02493 223 TKLPILVKGVL--T----GEDARIA--IQAGAAGIIVSNHGARQ--------------LDY---VPATISALEEVVKATQ 277 (367)
T ss_pred cCCCEEeecCC--C----HHHHHHH--HHcCCCEEEECCCCCCC--------------CCC---chhHHHHHHHHHHHhC
Confidence 78999999764 2 2345667 89999999999974321 111 1345677888888776
Q ss_pred CCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc----Cc----hHHHHHHHHHHHHHHHhCCCCHHHHhc
Q psy5880 258 GKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH----GP----PLVTRIKSELEELLQKEGYNSVSQAVG 323 (328)
Q Consensus 258 ~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~----gp----~~~~~i~~~l~~~m~~~g~~si~e~~G 323 (328)
+++|||+.|||+++.|+.++|.+||++|++||.+++. |. .+++.+.++++..|...|+++++|+..
T Consensus 278 ~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~ 351 (367)
T PLN02493 278 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISR 351 (367)
T ss_pred CCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCh
Confidence 6799999999999999999999999999999999852 33 357778889999999999999999864
No 62
>KOG2333|consensus
Probab=99.45 E-value=1.6e-12 Score=123.15 Aligned_cols=144 Identities=19% Similarity=0.273 Sum_probs=113.9
Q ss_pred ccEEEEccCCCCC----c--chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChh--hHHHHHHHhccc-c
Q psy5880 136 AHYFVVNVSSPNT----A--NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLD--EKKDIADVVLDS-K 206 (328)
Q Consensus 136 ~d~ieiN~scPn~----~--g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~--~~~~~a~~l~~~-~ 206 (328)
+|+|+||++||-. . |...+.++..+.++++++..+. ..+||.|||+.++-.. -..+++..+ . +
T Consensus 347 VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs------~~iPiTVKiRTG~keg~~~a~~Li~~i--~ne 418 (614)
T KOG2333|consen 347 VDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVS------GDIPITVKIRTGTKEGHPVAHELIPRI--VNE 418 (614)
T ss_pred eeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhc------cCCCeEEEEecccccCchhHHHHHHHH--hhc
Confidence 8999999999984 1 3445678889999999988873 4679999999875332 245666666 5 7
Q ss_pred CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc--cCe
Q psy5880 207 CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG--ASL 284 (328)
Q Consensus 207 ~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G--Ad~ 284 (328)
-|+++|++|++..+. -|+..+. +.+|.++.+..+..+|+||+|.|.|++|-.+.+..+ .+.
T Consensus 419 wg~savTlHGRSRqQ-------------RYTK~An----WdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~s 481 (614)
T KOG2333|consen 419 WGASAVTLHGRSRQQ-------------RYTKSAN----WDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDS 481 (614)
T ss_pred cCcceEEecCchhhh-------------hhhcccC----hHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcce
Confidence 899999999987652 1444444 477888888776559999999999999988888755 899
Q ss_pred eeehhHHhhcCchHHHHHHHH
Q psy5880 285 VQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 285 V~vg~a~l~~gp~~~~~i~~~ 305 (328)
|||+|+.|.+ ||+|.+|.+.
T Consensus 482 vMIaRGALIK-PWIFtEIkeq 501 (614)
T KOG2333|consen 482 VMIARGALIK-PWIFTEIKEQ 501 (614)
T ss_pred EEeecccccc-chHhhhhhhh
Confidence 9999999876 9999999764
No 63
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.42 E-value=1.7e-11 Score=114.38 Aligned_cols=153 Identities=16% Similarity=0.265 Sum_probs=109.4
Q ss_pred ccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEE-eCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 136 AHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVK-IAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 136 ~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vK-l~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
+|+|.+..+.|+. ..+.++++.+++.. .+.||+++ +. + .+-++.| .++|+|++.+
T Consensus 112 ~d~i~iD~a~gh~---------~~~~e~I~~ir~~~------p~~~vi~g~V~---t----~e~a~~l--~~aGad~i~v 167 (326)
T PRK05458 112 PEYITIDIAHGHS---------DSVINMIQHIKKHL------PETFVIAGNVG---T----PEAVREL--ENAGADATKV 167 (326)
T ss_pred CCEEEEECCCCch---------HHHHHHHHHHHhhC------CCCeEEEEecC---C----HHHHHHH--HHcCcCEEEE
Confidence 4999988775442 34667788887752 35889987 44 2 2345777 8999999988
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh--
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV-- 292 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l-- 292 (328)
+++.... ... . ...|. +.+.| .+..++.+++.++ +|||+.|||+++.|+.++|.+||++|++|+++.
T Consensus 168 g~~~G~~-~~t--~--~~~g~--~~~~w--~l~ai~~~~~~~~--ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~ 236 (326)
T PRK05458 168 GIGPGKV-CIT--K--IKTGF--GTGGW--QLAALRWCAKAAR--KPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGH 236 (326)
T ss_pred CCCCCcc-ccc--c--cccCC--CCCcc--HHHHHHHHHHHcC--CCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCC
Confidence 7654321 000 0 00111 12222 4556788888776 999999999999999999999999999999986
Q ss_pred ------------------------hc--------C---------c--hHHHHHHHHHHHHHHHhCCCCHHHHhc
Q psy5880 293 ------------------------YH--------G---------P--PLVTRIKSELEELLQKEGYNSVSQAVG 323 (328)
Q Consensus 293 ------------------------~~--------g---------p--~~~~~i~~~l~~~m~~~g~~si~e~~G 323 (328)
+. | + .++.++..+|+..|...|.+++.||+.
T Consensus 237 ~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~ 310 (326)
T PRK05458 237 EESPGKTVEIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRK 310 (326)
T ss_pred ccCCCceeeecchhHHHhhCcHhhhccccccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhc
Confidence 21 1 1 246778889999999999999999984
No 64
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.40 E-value=6.2e-12 Score=119.76 Aligned_cols=130 Identities=24% Similarity=0.318 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcC
Q psy5880 162 HLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPL 241 (328)
Q Consensus 162 ~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~ 241 (328)
+-++.+++. ++.||++|-. .+. +-++.+ .++|+|+|+++|+.... +.+
T Consensus 243 ~~i~~lr~~-------~~~pvivKgV--~~~----~dA~~a--~~~G~d~I~vsnhGGr~--------------~d~--- 290 (383)
T cd03332 243 EDLAFLREW-------TDLPIVLKGI--LHP----DDARRA--VEAGVDGVVVSNHGGRQ--------------VDG--- 290 (383)
T ss_pred HHHHHHHHh-------cCCCEEEecC--CCH----HHHHHH--HHCCCCEEEEcCCCCcC--------------CCC---
Confidence 445555554 6899999933 332 335667 79999999999864310 111
Q ss_pred chHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc----Cc----hHHHHHHHHHHHHHHHh
Q psy5880 242 RNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH----GP----PLVTRIKSELEELLQKE 313 (328)
Q Consensus 242 ~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~----gp----~~~~~i~~~l~~~m~~~ 313 (328)
.+..+..+.++++.+.+++||++.|||+++.|+.++|.+||++|++||++++. |. .+++.+.++++..|...
T Consensus 291 ~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~ 370 (383)
T cd03332 291 SIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLA 370 (383)
T ss_pred CcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 12346778888888866799999999999999999999999999999999842 32 46788889999999999
Q ss_pred CCCCHHHHhc
Q psy5880 314 GYNSVSQAVG 323 (328)
Q Consensus 314 g~~si~e~~G 323 (328)
|+++++||..
T Consensus 371 G~~~i~~l~~ 380 (383)
T cd03332 371 GIRSIAELTR 380 (383)
T ss_pred CCCCHHHhCc
Confidence 9999999965
No 65
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.39 E-value=7.8e-12 Score=118.88 Aligned_cols=129 Identities=25% Similarity=0.332 Sum_probs=99.3
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCch
Q psy5880 164 LKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRN 243 (328)
Q Consensus 164 ~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~ 243 (328)
++.+++. ++.||++|--. +. +-++.+ .++|+|+|+++|..... +.+ .+
T Consensus 237 i~~lr~~-------~~~pvivKgV~--s~----~dA~~a--~~~Gvd~I~Vs~hGGr~--------------~d~---~~ 284 (381)
T PRK11197 237 LEWIRDF-------WDGPMVIKGIL--DP----EDARDA--VRFGADGIVVSNHGGRQ--------------LDG---VL 284 (381)
T ss_pred HHHHHHh-------CCCCEEEEecC--CH----HHHHHH--HhCCCCEEEECCCCCCC--------------CCC---cc
Confidence 5555554 78999999763 32 335667 79999999999853210 111 12
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc----Cc----hHHHHHHHHHHHHHHHhCC
Q psy5880 244 KSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH----GP----PLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 244 ~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~----gp----~~~~~i~~~l~~~m~~~g~ 315 (328)
..+..+.++++.+..++|||+.|||+++.|+.++|.+||++|++||.+++. |. ..++.+.++++..|...|+
T Consensus 285 ~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~ 364 (381)
T PRK11197 285 SSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGA 364 (381)
T ss_pred cHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345667777777755699999999999999999999999999999999852 22 4688889999999999999
Q ss_pred CCHHHHhcc
Q psy5880 316 NSVSQAVGA 324 (328)
Q Consensus 316 ~si~e~~G~ 324 (328)
+|++||...
T Consensus 365 ~~i~el~~~ 373 (381)
T PRK11197 365 KSISEITRD 373 (381)
T ss_pred CCHHHhCHh
Confidence 999999754
No 66
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.35 E-value=2.1e-11 Score=115.19 Aligned_cols=129 Identities=21% Similarity=0.249 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGE 239 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~ 239 (328)
.-+.++.+++. .+.|+++|-- .+. +-++.+ .++|+|+|.++|..... +.+
T Consensus 224 ~w~~i~~ir~~-------~~~pviiKgV--~~~----eda~~a--~~~G~d~I~VSnhGGrq--------------ld~- 273 (361)
T cd04736 224 NWQDLRWLRDL-------WPHKLLVKGI--VTA----EDAKRC--IELGADGVILSNHGGRQ--------------LDD- 273 (361)
T ss_pred CHHHHHHHHHh-------CCCCEEEecC--CCH----HHHHHH--HHCCcCEEEECCCCcCC--------------CcC-
Confidence 34566677665 6789999943 342 235667 79999999999864321 111
Q ss_pred cCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh----cCc----hHHHHHHHHHHHHHH
Q psy5880 240 PLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY----HGP----PLVTRIKSELEELLQ 311 (328)
Q Consensus 240 ~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~----~gp----~~~~~i~~~l~~~m~ 311 (328)
.+..++.+.++++.++ +|||+.|||+++.|+.++|.+||++|++||++++ .|. .+++.+.++++..|.
T Consensus 274 --~~~~~~~L~ei~~~~~--~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~el~~~m~ 349 (361)
T cd04736 274 --AIAPIEALAEIVAATY--KPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLA 349 (361)
T ss_pred --CccHHHHHHHHHHHhC--CeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 1224677888888876 9999999999999999999999999999999984 333 357788889999999
Q ss_pred HhCCCCHHHHh
Q psy5880 312 KEGYNSVSQAV 322 (328)
Q Consensus 312 ~~g~~si~e~~ 322 (328)
..|++|++|+.
T Consensus 350 l~G~~~i~~l~ 360 (361)
T cd04736 350 LIGCPDIASLT 360 (361)
T ss_pred HhCCCCHHHcC
Confidence 99999999984
No 67
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.32 E-value=5.9e-11 Score=112.03 Aligned_cols=109 Identities=34% Similarity=0.466 Sum_probs=88.2
Q ss_pred CcccccCCCCcCChhhHHHHHHHhHHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCC
Q psy5880 20 GEWGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPL 99 (328)
Q Consensus 20 ~~~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~ 99 (328)
-.+++|++.|+.+..+. ..+||.++++++...+||+++|+||||++|++..++++.+.+++++|++..+.+.....
T Consensus 135 ~~i~vsi~~~~~~~~~~----~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~ 210 (335)
T TIGR01036 135 GPIGINIGKNKDTPSED----AKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHR 210 (335)
T ss_pred CcEEEEEeCCCCCCccc----CHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccC
Confidence 35999999997543322 23589999999998999999999999999999999999999999999988754332223
Q ss_pred CcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEE
Q psy5880 100 PPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVV 141 (328)
Q Consensus 100 ~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~iei 141 (328)
.|+++|++|+++ .+.+.++++++.+++ +|+|.+
T Consensus 211 ~Pv~vKLsP~~~-------~~~i~~ia~~~~~~G--adGi~l 243 (335)
T TIGR01036 211 VPVLVKIAPDLT-------ESDLEDIADSLVELG--IDGVIA 243 (335)
T ss_pred CceEEEeCCCCC-------HHHHHHHHHHHHHhC--CcEEEE
Confidence 799999999863 446888888888877 888775
No 68
>KOG0538|consensus
Probab=99.25 E-value=5.8e-11 Score=106.99 Aligned_cols=121 Identities=26% Similarity=0.369 Sum_probs=96.3
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
++.||++|--. +-|| |..+ .++|++||+++|+....- - .-|.+++.+.++-+++.
T Consensus 222 T~LPIvvKGil--t~eD----A~~A--ve~G~~GIIVSNHGgRQl--------------D---~vpAtI~~L~Evv~aV~ 276 (363)
T KOG0538|consen 222 TKLPIVVKGVL--TGED----ARKA--VEAGVAGIIVSNHGGRQL--------------D---YVPATIEALPEVVKAVE 276 (363)
T ss_pred CcCCeEEEeec--ccHH----HHHH--HHhCCceEEEeCCCcccc--------------C---cccchHHHHHHHHHHhc
Confidence 78999999544 3222 4555 799999999999754311 0 11456788889999998
Q ss_pred CCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc----Cc----hHHHHHHHHHHHHHHHhCCCCHHHHhc
Q psy5880 258 GKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH----GP----PLVTRIKSELEELLQKEGYNSVSQAVG 323 (328)
Q Consensus 258 ~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~----gp----~~~~~i~~~l~~~m~~~g~~si~e~~G 323 (328)
+++||..-|||+++.|+.++|.+||.+|.+||.++|. |- ..++-++++++.-|...||.|+.|+.-
T Consensus 277 ~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~efe~tmaLsGc~sv~ei~~ 350 (363)
T KOG0538|consen 277 GRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDEFELTMALSGCRSVKEITR 350 (363)
T ss_pred CceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHHHHHHHHHHHHHhCCCchhhhCc
Confidence 8999999999999999999999999999999999852 22 346667778889999999999999854
No 69
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.23 E-value=6.6e-10 Score=100.57 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcc-hhhh-hhhHHHH-----HHHHHHHHHHHhhcCCCCCCE--EEEeCCCC
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTAN-LRKL-QAKDQLK-----HLLKTVVETRNQLAVKPLPPI--LVKIAPDL 190 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g-~~~~-~~~~~~~-----~i~~~v~~~~~~~~~~~~~Pv--~vKl~~~~ 190 (328)
+.+.++++.+.. .+|++|||+.||+... .... +...... ++++++++. .++|+ ++|+++..
T Consensus 18 ~~~~~~~~~l~~---~ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~-------~~~Pl~lM~y~n~~~ 87 (244)
T PRK13125 18 ESFKEFIIGLVE---LVDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKD-------VSVPIILMTYLEDYV 87 (244)
T ss_pred HHHHHHHHHHHh---hCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhcc-------CCCCEEEEEecchhh
Confidence 444555555543 3999999999999731 1111 1222222 677777654 67897 47888843
Q ss_pred ChhhHHHHHHHhccccCCccEEEEecCCc---cch--------h-hh------cc-----c----------cc--cccCC
Q psy5880 191 SLDEKKDIADVVLDSKCKVDGLIVSNTTV---DRY--------E-YL------DA-----R----------YK--EETGG 235 (328)
Q Consensus 191 ~~~~~~~~a~~l~~~~~G~d~i~~~n~~~---~~~--------~-~~------~~-----~----------~~--~~~gg 235 (328)
. +..++++.+ .++|+|+++++.-.. ... + +. .| . .- ...++
T Consensus 88 ~--~~~~~i~~~--~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~ 163 (244)
T PRK13125 88 D--SLDNFLNMA--RDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPA 163 (244)
T ss_pred h--CHHHHHHHH--HHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCC
Confidence 2 467778888 899999998873211 000 0 00 00 0 00 11222
Q ss_pred CCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 236 LSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 236 ~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
..+ ...+...+.++++++..+ +.||+.-|||++++++.+++++|||+|.+||+++.
T Consensus 164 ~g~-~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 164 TGV-PLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CCC-CchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 322 333444678899998874 47999999999999999999999999999999974
No 70
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.23 E-value=1.1e-09 Score=101.97 Aligned_cols=154 Identities=15% Similarity=0.242 Sum_probs=102.6
Q ss_pred ccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 136 AHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 136 ~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.|+|.+..+ | | +-..+.+.++.+++. .+.|.+++ .+.. ..+.++.| .++|+|+|.++
T Consensus 109 ~d~i~~D~a--h--g-----~s~~~~~~i~~i~~~-------~p~~~vi~--GnV~---t~e~a~~l--~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIA--H--G-----HSNSVINMIKHIKTH-------LPDSFVIA--GNVG---TPEAVREL--ENAGADATKVG 165 (321)
T ss_pred CCEEEEeCc--c--C-----chHHHHHHHHHHHHh-------CCCCEEEE--ecCC---CHHHHHHH--HHcCcCEEEEC
Confidence 688887666 2 1 123466667777765 44453333 2221 24567888 89999999988
Q ss_pred cCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh--
Q psy5880 216 NTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY-- 293 (328)
Q Consensus 216 n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~-- 293 (328)
+.... ..+. .. . -|. | ...+.+..+.++++..+ +|||+.|||+++.|+.++|.+|||+||+|+.+--
T Consensus 166 ~G~G~-~~~t--r~--~-~g~-g--~~~~~l~ai~ev~~a~~--~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~ 234 (321)
T TIGR01306 166 IGPGK-VCIT--KI--K-TGF-G--TGGWQLAALRWCAKAAR--KPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHE 234 (321)
T ss_pred CCCCc-cccc--ee--e-ecc-C--CCchHHHHHHHHHHhcC--CeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcc
Confidence 53221 0000 00 0 111 1 11234577888888876 9999999999999999999999999999997720
Q ss_pred -----------------------------------------cCc--hHHHHHHHHHHHHHHHhCCCCHHHHhc
Q psy5880 294 -----------------------------------------HGP--PLVTRIKSELEELLQKEGYNSVSQAVG 323 (328)
Q Consensus 294 -----------------------------------------~gp--~~~~~i~~~l~~~m~~~g~~si~e~~G 323 (328)
+|+ +++..+..+|+.-|...|+++|.||+-
T Consensus 235 Espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~~ 307 (321)
T TIGR01306 235 ESPGETVEKDGKLYKEYFGSASEFQKGEHKNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLRT 307 (321)
T ss_pred cCCCceEeeCCeEHhhhcCchhhhcccccccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHhh
Confidence 011 245677778888999999999999873
No 71
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=99.20 E-value=2.6e-10 Score=101.25 Aligned_cols=119 Identities=22% Similarity=0.307 Sum_probs=87.3
Q ss_pred cccE--EEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe---CCCCChhhHHHHHHHhccccCCc
Q psy5880 135 VAHY--FVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI---APDLSLDEKKDIADVVLDSKCKV 209 (328)
Q Consensus 135 ~~d~--ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl---~~~~~~~~~~~~a~~l~~~~~G~ 209 (328)
|+|- +.+|+++|++.+. +.+.+-+.++++. . .|+.+|+ ++.++.+++..+++.+ .++|+
T Consensus 87 GA~EiD~Vin~~~~~~g~~------~~v~~ei~~v~~~-------~-~~~~lKvIlEt~~L~~e~i~~a~~~~--~~aga 150 (221)
T PRK00507 87 GADEIDMVINIGALKSGDW------DAVEADIRAVVEA-------A-GGAVLKVIIETCLLTDEEKVKACEIA--KEAGA 150 (221)
T ss_pred CCceEeeeccHHHhcCCCH------HHHHHHHHHHHHh-------c-CCceEEEEeecCcCCHHHHHHHHHHH--HHhCC
Confidence 3544 4468888887421 2233333444443 2 3789999 9999999999999999 99999
Q ss_pred cEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehh
Q psy5880 210 DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 210 d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~ 289 (328)
|+| -++|.+. .+| .+++.++.+++.++++++|.++|||+|.+|+.+++++||+.++..+
T Consensus 151 dfI-KTsTG~~------------~~g--------at~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~ 209 (221)
T PRK00507 151 DFV-KTSTGFS------------TGG--------ATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTSA 209 (221)
T ss_pred CEE-EcCCCCC------------CCC--------CCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccCc
Confidence 966 4555442 122 2357788888888778999999999999999999999999997654
Q ss_pred H
Q psy5880 290 S 290 (328)
Q Consensus 290 a 290 (328)
+
T Consensus 210 ~ 210 (221)
T PRK00507 210 G 210 (221)
T ss_pred H
Confidence 4
No 72
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.18 E-value=7.9e-10 Score=105.23 Aligned_cols=173 Identities=14% Similarity=0.180 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
...++++.+..++ +|+|.++...... .+.... ....++.+.+++ .++||++.- -.+ .+.++
T Consensus 142 ~~~e~a~~l~eaG--vd~I~vhgrt~~~-~h~~~~--~~~~~i~~~ik~--------~~ipVIaG~--V~t----~e~A~ 202 (368)
T PRK08649 142 RAQELAPTVVEAG--VDLFVIQGTVVSA-EHVSKE--GEPLNLKEFIYE--------LDVPVIVGG--CVT----YTTAL 202 (368)
T ss_pred CHHHHHHHHHHCC--CCEEEEeccchhh-hccCCc--CCHHHHHHHHHH--------CCCCEEEeC--CCC----HHHHH
Confidence 4567777777777 9999987642111 000000 012333333333 478998821 123 33456
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHH--------cCCCccEEEecCCCCHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKL--------TKGKLPIIGVGGVFSGK 272 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~--------~~~~ipvia~GGI~s~~ 272 (328)
.+ .++|+|+|.+. ...+.. ... ....|.. .| .+..+.++++. ...++|||+.|||+++.
T Consensus 203 ~l--~~aGAD~V~VG-~G~Gs~--~~t------~~~~g~g-~p-~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~ 269 (368)
T PRK08649 203 HL--MRTGAAGVLVG-IGPGAA--CTS------RGVLGIG-VP-MATAIADVAAARRDYLDETGGRYVHVIADGGIGTSG 269 (368)
T ss_pred HH--HHcCCCEEEEC-CCCCcC--CCC------cccCCCC-cC-HHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHH
Confidence 66 67999999664 221100 000 0011100 11 12333333221 11149999999999999
Q ss_pred HHHHHHHhccCeeeehhHHhh------------------------------cCc--hHHH----------HHHHHHHHHH
Q psy5880 273 DAFEKIKAGASLVQIYTSFVY------------------------------HGP--PLVT----------RIKSELEELL 310 (328)
Q Consensus 273 da~~~l~~GAd~V~vg~a~l~------------------------------~gp--~~~~----------~i~~~l~~~m 310 (328)
|+.++|.+|||+||+||.|.. +|| +.+. ++..+|+.-|
T Consensus 270 diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m 349 (368)
T PRK08649 270 DIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPHPSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSM 349 (368)
T ss_pred HHHHHHHcCCCeecccchhcccccCCCcccccCcccCCCcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHH
Confidence 999999999999999998862 122 2334 7888999999
Q ss_pred HHhCCCCHHHHhccc
Q psy5880 311 QKEGYNSVSQAVGAA 325 (328)
Q Consensus 311 ~~~g~~si~e~~G~~ 325 (328)
...|+++|.||+-..
T Consensus 350 ~~~g~~~~~~~~~~~ 364 (368)
T PRK08649 350 ATLGYSDLKEFQKVE 364 (368)
T ss_pred HhcCCCcHHHHhhcC
Confidence 999999999997643
No 73
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.18 E-value=5e-11 Score=107.77 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCc---c-hhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTA---N-LRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~---g-~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+-++.++.++ ++.+.+|..||... | .....+++. +++|++. .++||+.|...+. +.+
T Consensus 27 ~~~a~iae~~g--~~~v~~~~~~psd~~~~gg~~Rm~~p~~----I~aIk~~-------V~iPVigk~Righ----~~E- 88 (293)
T PRK04180 27 AEQAKIAEEAG--AVAVMALERVPADIRAAGGVARMADPKM----IEEIMDA-------VSIPVMAKARIGH----FVE- 88 (293)
T ss_pred HHHHHHHHHhC--hHHHHHccCCCchHhhcCCeeecCCHHH----HHHHHHh-------CCCCeEEeehhhH----HHH-
Confidence 34455666666 99999999999952 2 112334443 4466766 7899999988653 334
Q ss_pred HHHhccccCCccEEEEecCCccch--------hhhcc-------------------cc-ccc------------------
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRY--------EYLDA-------------------RY-KEE------------------ 232 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~--------~~~~~-------------------~~-~~~------------------ 232 (328)
++.| +++|+|.|..+.+..-.. ....| .+ ...
T Consensus 89 a~~L--~~~GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~ 166 (293)
T PRK04180 89 AQIL--EALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQI 166 (293)
T ss_pred HHHH--HHcCCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHH
Confidence 5778 899999998655321100 00000 00 000
Q ss_pred ------cCCCCCCc------CchHHHHHHHHHHHHcCCCccEE--EecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 233 ------TGGLSGEP------LRNKSTELISEMYKLTKGKLPII--GVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 233 ------~gg~sg~~------~~~~~l~~v~~i~~~~~~~ipvi--a~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
..||.... .....++.++++++..+ +||+ +.|||.|++++.+++++||++|.|||+++
T Consensus 167 ~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~--iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ 238 (293)
T PRK04180 167 NGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGR--LPVVNFAAGGIATPADAALMMQLGADGVFVGSGIF 238 (293)
T ss_pred HHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCC--CCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhh
Confidence 12222111 01234678888888776 9998 99999999999999999999999999996
No 74
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.17 E-value=7.2e-10 Score=95.57 Aligned_cols=124 Identities=20% Similarity=0.190 Sum_probs=88.2
Q ss_pred HHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccc
Q psy5880 126 VKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDS 205 (328)
Q Consensus 126 ~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~ 205 (328)
+..++.++ +|+|++|.+||.. ++...++++++++.. .++|+++|+++..+.++. .+ .
T Consensus 77 a~~~~~~g--~d~v~l~~~~~~~--------~~~~~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~-----~~--~ 133 (200)
T cd04722 77 AAAARAAG--ADGVEIHGAVGYL--------AREDLELIRELREAV------PDVKVVVKLSPTGELAAA-----AA--E 133 (200)
T ss_pred HHHHHHcC--CCEEEEeccCCcH--------HHHHHHHHHHHHHhc------CCceEEEEECCCCccchh-----hH--H
Confidence 44555555 9999999998763 456778888887762 278999999886443211 15 6
Q ss_pred cCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCee
Q psy5880 206 KCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLV 285 (328)
Q Consensus 206 ~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V 285 (328)
+.|+|++.++++.... . ... ..+.....+..+++..+ +||+++|||++++++.+++++|||+|
T Consensus 134 ~~g~d~i~~~~~~~~~------------~-~~~--~~~~~~~~~~~~~~~~~--~pi~~~GGi~~~~~~~~~~~~Gad~v 196 (200)
T cd04722 134 EAGVDEVGLGNGGGGG------------G-GRD--AVPIADLLLILAKRGSK--VPVIAGGGINDPEDAAEALALGADGV 196 (200)
T ss_pred HcCCCEEEEcCCcCCC------------C-Ccc--CchhHHHHHHHHHhcCC--CCEEEECCCCCHHHHHHHHHhCCCEE
Confidence 8899999988765431 0 001 11112344555555554 99999999999999999999999999
Q ss_pred eehh
Q psy5880 286 QIYT 289 (328)
Q Consensus 286 ~vg~ 289 (328)
++||
T Consensus 197 ~vgs 200 (200)
T cd04722 197 IVGS 200 (200)
T ss_pred EecC
Confidence 9986
No 75
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.15 E-value=2.4e-09 Score=100.73 Aligned_cols=167 Identities=15% Similarity=0.237 Sum_probs=107.8
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.+.++.+.+++ +|.|++|++..+ .....+.++.+++.. .++||++ .+.. ..+.++.+
T Consensus 96 ~~~~~~l~eag--v~~I~vd~~~G~---------~~~~~~~i~~ik~~~------p~v~Vi~---G~v~---t~~~A~~l 152 (325)
T cd00381 96 KERAEALVEAG--VDVIVIDSAHGH---------SVYVIEMIKFIKKKY------PNVDVIA---GNVV---TAEAARDL 152 (325)
T ss_pred HHHHHHHHhcC--CCEEEEECCCCC---------cHHHHHHHHHHHHHC------CCceEEE---CCCC---CHHHHHHH
Confidence 34444454455 999999886322 134566777777651 2467776 2222 23456777
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC-CCccEEEecCCCCHHHHHHHHHhc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK-GKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~-~~ipvia~GGI~s~~da~~~l~~G 281 (328)
.++|+|+|.++.+... ... .....| .|.+ .+..+..+.+... .++|||+.|||.++.|+.+++.+|
T Consensus 153 --~~aGaD~I~vg~g~G~-~~~-----t~~~~g-~g~p----~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~G 219 (325)
T cd00381 153 --IDAGADGVKVGIGPGS-ICT-----TRIVTG-VGVP----QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAG 219 (325)
T ss_pred --HhcCCCEEEECCCCCc-Ccc-----cceeCC-CCCC----HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcC
Confidence 8999999987532110 000 000001 1222 2344444444332 139999999999999999999999
Q ss_pred cCeeeehhHHhhc-------------------------------------------------------C--chHHHHHHH
Q psy5880 282 ASLVQIYTSFVYH-------------------------------------------------------G--PPLVTRIKS 304 (328)
Q Consensus 282 Ad~V~vg~a~l~~-------------------------------------------------------g--p~~~~~i~~ 304 (328)
|++||+||.|... | .+++..+..
T Consensus 220 A~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~ 299 (325)
T cd00381 220 ADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVG 299 (325)
T ss_pred CCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccccccccccccccCCceEEEEecCCcHHHHHHHHHH
Confidence 9999999887520 1 135688888
Q ss_pred HHHHHHHHhCCCCHHHHhccc
Q psy5880 305 ELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 305 ~l~~~m~~~g~~si~e~~G~~ 325 (328)
+|+.-|.-.|++||.||+-++
T Consensus 300 glr~~~~y~G~~~l~~~~~~~ 320 (325)
T cd00381 300 GLRSSMGYCGAKSLKELQEKA 320 (325)
T ss_pred HHHHHHHhcCCCcHHHHHhcC
Confidence 999999999999999998754
No 76
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.14 E-value=2e-09 Score=100.54 Aligned_cols=150 Identities=21% Similarity=0.301 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhh
Q psy5880 76 AKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQ 155 (328)
Q Consensus 76 ~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~ 155 (328)
.++.+++-+..+++.. .+|+.+.+... . ....+.++.+.+.+ ++.|.+++..|
T Consensus 46 ~~~~l~~~i~~~~~~t-------~~pfgvn~~~~------~---~~~~~~~~~~~~~~--v~~v~~~~g~p--------- 98 (307)
T TIGR03151 46 PPDVVRKEIRKVKELT-------DKPFGVNIMLL------S---PFVDELVDLVIEEK--VPVVTTGAGNP--------- 98 (307)
T ss_pred CHHHHHHHHHHHHHhc-------CCCcEEeeecC------C---CCHHHHHHHHHhCC--CCEEEEcCCCc---------
Confidence 3566776666666432 24654433211 0 12344555555555 78888655433
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCC
Q psy5880 156 AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG 235 (328)
Q Consensus 156 ~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg 235 (328)
.++++.+++ .+++++..++. .+.++.+ +++|+|+|+++++.. ||
T Consensus 99 -----~~~i~~lk~--------~g~~v~~~v~s-------~~~a~~a--~~~GaD~Ivv~g~ea--------------gG 142 (307)
T TIGR03151 99 -----GKYIPRLKE--------NGVKVIPVVAS-------VALAKRM--EKAGADAVIAEGMES--------------GG 142 (307)
T ss_pred -----HHHHHHHHH--------cCCEEEEEcCC-------HHHHHHH--HHcCCCEEEEECccc--------------CC
Confidence 134555554 35677776533 3457788 899999999988632 55
Q ss_pred CCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 236 LSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 236 ~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
+.|.. ..+..+.++++.++ +|||+.|||.+++++.+++.+||++|++||.|+.
T Consensus 143 h~g~~---~~~~ll~~v~~~~~--iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 143 HIGEL---TTMALVPQVVDAVS--IPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred CCCCC---cHHHHHHHHHHHhC--CCEEEECCCCCHHHHHHHHHcCCCEeecchHHhc
Confidence 54432 24678888988887 9999999999999999999999999999999984
No 77
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.13 E-value=5.5e-10 Score=101.92 Aligned_cols=144 Identities=19% Similarity=0.272 Sum_probs=100.9
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC--------------CChhhHHHHHH
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD--------------LSLDEKKDIAD 200 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~--------------~~~~~~~~~a~ 200 (328)
+++.+.+|.. ..+++..+.++++...+ ..+++.+++..+ .+.....++++
T Consensus 96 G~~~vvigs~--------~~~~~~~~~~~~~~~~~--------~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~ 159 (258)
T PRK01033 96 GVEKVSINTA--------ALEDPDLITEAAERFGS--------QSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAK 159 (258)
T ss_pred CCCEEEEChH--------HhcCHHHHHHHHHHhCC--------CcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHH
Confidence 4889988733 23455666666555321 235666665432 11224678889
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH-H
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI-K 279 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l-~ 279 (328)
.+ .+.|++.+.+++.... |.++|+ .++.++++++.++ +|||++|||++.+|+.+++ .
T Consensus 160 ~~--~~~g~~~ii~~~i~~~-------------G~~~G~-----d~~~i~~~~~~~~--ipvIasGGv~s~eD~~~l~~~ 217 (258)
T PRK01033 160 EY--EALGAGEILLNSIDRD-------------GTMKGY-----DLELLKSFRNALK--IPLIALGGAGSLDDIVEAILN 217 (258)
T ss_pred HH--HHcCCCEEEEEccCCC-------------CCcCCC-----CHHHHHHHHhhCC--CCEEEeCCCCCHHHHHHHHHH
Confidence 99 8999999999876543 446664 4688899998877 9999999999999999999 7
Q ss_pred hccCeeeehhHHhhcCch---HHHHHHHHHHHHHHHhCCC
Q psy5880 280 AGASLVQIYTSFVYHGPP---LVTRIKSELEELLQKEGYN 316 (328)
Q Consensus 280 ~GAd~V~vg~a~l~~gp~---~~~~i~~~l~~~m~~~g~~ 316 (328)
.|+++|.+|+++.+.+.. ........++.+|..+|+.
T Consensus 218 ~GvdgVivg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (258)
T PRK01033 218 LGADAAAAGSLFVFKGVYKAVLINYPNGDEKEELLKAGIP 257 (258)
T ss_pred CCCCEEEEcceeeeCcccccccccccHHHHHHHHHHcCCC
Confidence 999999999999876332 1233334456667766653
No 78
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=99.13 E-value=3.1e-10 Score=107.31 Aligned_cols=104 Identities=23% Similarity=0.357 Sum_probs=84.9
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCe
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASL 284 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~ 284 (328)
-+.|+++|.++|+....- -+| +.+.+.+.++++.++++++|++.|||+++.|+.++|..||++
T Consensus 236 ~~tg~~~I~vsnhggrql----------D~g-------~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~ 298 (360)
T COG1304 236 GGTGADGIEVSNHGGRQL----------DWG-------ISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADA 298 (360)
T ss_pred ccCCceEEEEEcCCCccc----------cCC-------CChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCch
Confidence 588999999998653211 122 224577888899998789999999999999999999999999
Q ss_pred eeehhHHhhc----Cc----hHHHHHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 285 VQIYTSFVYH----GP----PLVTRIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 285 V~vg~a~l~~----gp----~~~~~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
|++||+++|. |. .+++.+.++++..|...|++||+||+...
T Consensus 299 v~igrp~L~~l~~~g~~GV~~~le~~~~El~~~M~L~G~~~i~el~~~~ 347 (360)
T COG1304 299 VGIGRPFLYGLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVP 347 (360)
T ss_pred hhhhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcHHHhccCc
Confidence 9999999852 22 35788888999999999999999998753
No 79
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.10 E-value=2.1e-09 Score=102.09 Aligned_cols=170 Identities=25% Similarity=0.365 Sum_probs=111.1
Q ss_pred CCc-ccccCCCCcCChhhHHHHHHHhHHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCC
Q psy5880 19 SGE-WGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALK 97 (328)
Q Consensus 19 ~~~-~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~ 97 (328)
.+. +++|++.+..++.+.. .+||.++++++...+|++++|+||||+.|.+.+++++.+.+++.+|++...... +
T Consensus 136 ~~~pvivsI~~~~~~~~~~~----~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~-~ 210 (344)
T PRK05286 136 RGIPLGINIGKNKDTPLEDA----VDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELH-G 210 (344)
T ss_pred CCCcEEEEEecCCCCCcccC----HHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccc-c
Confidence 344 8999988865433221 248999999998889999999999999998889999999999999998753110 0
Q ss_pred CCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcch--------h-hhhhh---HHHHHHHH
Q psy5880 98 PLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANL--------R-KLQAK---DQLKHLLK 165 (328)
Q Consensus 98 ~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~--------~-~~~~~---~~~~~i~~ 165 (328)
..|+++|++|+++ .+.+.++++.++.++ +|+|.+.-+-+...+. . -...+ ....+.+.
T Consensus 211 -~~PV~vKlsp~~~-------~~~~~~ia~~l~~~G--adgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~ 280 (344)
T PRK05286 211 -YVPLLVKIAPDLS-------DEELDDIADLALEHG--IDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIR 280 (344)
T ss_pred -CCceEEEeCCCCC-------HHHHHHHHHHHHHhC--CcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHH
Confidence 2799999998753 345777888887776 9999874332211100 0 00011 12334444
Q ss_pred HHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 166 TVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 166 ~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.+++. +. .++||+. ..++.. ..++.+.+ .+|||+|.+.
T Consensus 281 ~l~~~---~~--~~ipIig--~GGI~s--~eda~e~l---~aGAd~V~v~ 318 (344)
T PRK05286 281 RLYKE---LG--GRLPIIG--VGGIDS--AEDAYEKI---RAGASLVQIY 318 (344)
T ss_pred HHHHH---hC--CCCCEEE--ECCCCC--HHHHHHHH---HcCCCHHHHH
Confidence 55443 21 2678764 334332 34555555 4899988554
No 80
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.07 E-value=3.3e-09 Score=100.42 Aligned_cols=117 Identities=21% Similarity=0.292 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCC
Q psy5880 156 AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG 235 (328)
Q Consensus 156 ~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg 235 (328)
+.+.+.+.++.+|+.. ..+||.+|+......+ .++..+ .++|+|+|++.+...+. +..|.....
T Consensus 186 s~edl~~~I~~Lr~~~------~~~pVgvKl~~~~~~~---~~~~~~--~~ag~D~ItIDG~~GGT--GAap~~~~d--- 249 (368)
T PF01645_consen 186 SIEDLAQLIEELRELN------PGKPVGVKLVAGRGVE---DIAAGA--AKAGADFITIDGAEGGT--GAAPLTSMD--- 249 (368)
T ss_dssp SHHHHHHHHHHHHHH-------TTSEEEEEEE-STTHH---HHHHHH--HHTT-SEEEEE-TT-----SSEECCHHH---
T ss_pred CHHHHHHHHHHHHhhC------CCCcEEEEECCCCcHH---HHHHhh--hhccCCEEEEeCCCCCC--CCCchhHHh---
Confidence 4566888888888772 4799999998875543 333436 78999999998754321 000000000
Q ss_pred CCCCcCchHHHHHHHHHHHH-----cCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 236 LSGEPLRNKSTELISEMYKL-----TKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 236 ~sg~~~~~~~l~~v~~i~~~-----~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
..|-| . ...+.++++. +++++.++++||+.|+.|+.+++.+|||+|.+||++|
T Consensus 250 ~~GlP---~-~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~l 307 (368)
T PF01645_consen 250 HVGLP---T-EYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAAL 307 (368)
T ss_dssp HC------H-HHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHH
T ss_pred hCCCc---H-HHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhh
Confidence 01111 1 1222233322 3457999999999999999999999999999999887
No 81
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.07 E-value=7.6e-09 Score=98.35 Aligned_cols=170 Identities=16% Similarity=0.155 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcch-hhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANL-RKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~-~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
...++++.+.+++ +|.|.++-.--.. .. ....++..+.+++ ++ .++||++ ..-.+. +.+
T Consensus 143 ~~~e~a~~l~eAG--ad~I~ihgrt~~q-~~~sg~~~p~~l~~~i---~~--------~~IPVI~--G~V~t~----e~A 202 (369)
T TIGR01304 143 NAREIAPIVVKAG--ADLLVIQGTLVSA-EHVSTSGEPLNLKEFI---GE--------LDVPVIA--GGVNDY----TTA 202 (369)
T ss_pred CHHHHHHHHHHCC--CCEEEEeccchhh-hccCCCCCHHHHHHHH---HH--------CCCCEEE--eCCCCH----HHH
Confidence 5678888888877 9999987321000 00 0011223233332 22 5789997 222332 334
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchH--HHHHHHHHHH----HcC-CCccEEEecCCCCHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNK--STELISEMYK----LTK-GKLPIIGVGGVFSGK 272 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~--~l~~v~~i~~----~~~-~~ipvia~GGI~s~~ 272 (328)
..+ .+.|+|+|.+..+..... ...-|. ..|. .+..+...++ ... ..+|||+.|||.++.
T Consensus 203 ~~~--~~aGaDgV~~G~gg~~~~-----------~~~lg~-~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~ 268 (369)
T TIGR01304 203 LHL--MRTGAAGVIVGPGGANTT-----------RLVLGI-EVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSG 268 (369)
T ss_pred HHH--HHcCCCEEEECCCCCccc-----------ccccCC-CCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHH
Confidence 555 579999997332111000 001110 1121 1222222222 122 249999999999999
Q ss_pred HHHHHHHhccCeeeehhHHhh------cCchH---------------------------------------HHHHHHHHH
Q psy5880 273 DAFEKIKAGASLVQIYTSFVY------HGPPL---------------------------------------VTRIKSELE 307 (328)
Q Consensus 273 da~~~l~~GAd~V~vg~a~l~------~gp~~---------------------------------------~~~i~~~l~ 307 (328)
|+.++|.+|||+||+||+|.. +|.+| ..++...|+
T Consensus 269 di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~ 348 (369)
T TIGR01304 269 DLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAHPRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLK 348 (369)
T ss_pred HHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcCccCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHH
Confidence 999999999999999999872 12122 234556788
Q ss_pred HHHHHhCCCCHHHHhcc
Q psy5880 308 ELLQKEGYNSVSQAVGA 324 (328)
Q Consensus 308 ~~m~~~g~~si~e~~G~ 324 (328)
.-|...||+++.||.-.
T Consensus 349 ~~~~~~g~~~~~~~~~~ 365 (369)
T TIGR01304 349 RAMAKCGYTDLKEFQKV 365 (369)
T ss_pred HHHHHcCchhhhhhhhc
Confidence 89999999999998643
No 82
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.05 E-value=8e-09 Score=98.95 Aligned_cols=167 Identities=21% Similarity=0.209 Sum_probs=108.8
Q ss_pred HHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhc
Q psy5880 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVL 203 (328)
Q Consensus 124 ~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~ 203 (328)
+.++.+..++ +|.|.+..+.++ ...+.++++.+++.. .+.+|+++--. + .+-++.+
T Consensus 156 ~~v~~lv~aG--vDvI~iD~a~g~---------~~~~~~~v~~ik~~~------p~~~vi~g~V~--T----~e~a~~l- 211 (404)
T PRK06843 156 ERVEELVKAH--VDILVIDSAHGH---------STRIIELVKKIKTKY------PNLDLIAGNIV--T----KEAALDL- 211 (404)
T ss_pred HHHHHHHhcC--CCEEEEECCCCC---------ChhHHHHHHHHHhhC------CCCcEEEEecC--C----HHHHHHH-
Confidence 3344444444 999998777543 234677788887752 46788886443 2 3446777
Q ss_pred cccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccC
Q psy5880 204 DSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGAS 283 (328)
Q Consensus 204 ~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd 283 (328)
.++|+|+|.+..+..+ ..+. ...-|. |.|.. ..+..++++.+..+ +|||+.|||+++.|+.++|.+||+
T Consensus 212 -~~aGaD~I~vG~g~Gs-~c~t-----r~~~g~-g~p~l-tai~~v~~~~~~~~--vpVIAdGGI~~~~Di~KALalGA~ 280 (404)
T PRK06843 212 -ISVGADCLKVGIGPGS-ICTT-----RIVAGV-GVPQI-TAICDVYEVCKNTN--ICIIADGGIRFSGDVVKAIAAGAD 280 (404)
T ss_pred -HHcCCCEEEECCCCCc-CCcc-----eeecCC-CCChH-HHHHHHHHHHhhcC--CeEEEeCCCCCHHHHHHHHHcCCC
Confidence 8999999986433211 0000 000111 22110 12333444444444 999999999999999999999999
Q ss_pred eeeehhHHhh----------------------------------------------------------cCc--hHHHHHH
Q psy5880 284 LVQIYTSFVY----------------------------------------------------------HGP--PLVTRIK 303 (328)
Q Consensus 284 ~V~vg~a~l~----------------------------------------------------------~gp--~~~~~i~ 303 (328)
+||+|++|.. +|| +++.++.
T Consensus 281 aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v~~~~~~l~ 360 (404)
T PRK06843 281 SVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLK 360 (404)
T ss_pred EEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCCCccEEEecCCCCHHHHHHHHH
Confidence 9999998742 011 2467788
Q ss_pred HHHHHHHHHhCCCCHHHHhccc
Q psy5880 304 SELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 304 ~~l~~~m~~~g~~si~e~~G~~ 325 (328)
.+|+.-|.-.|.+||.||+-++
T Consensus 361 gglrs~m~y~Ga~~i~el~~~a 382 (404)
T PRK06843 361 GGLMSGMGYLGAATISDLKINS 382 (404)
T ss_pred HHHHHHhhccCCCcHHHHHhcC
Confidence 8899999999999999998643
No 83
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.04 E-value=6.1e-09 Score=98.27 Aligned_cols=171 Identities=29% Similarity=0.421 Sum_probs=111.6
Q ss_pred CCcccccCCCCcCChhhHHHHHHHhHHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCC
Q psy5880 19 SGEWGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKP 98 (328)
Q Consensus 19 ~~~~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~ 98 (328)
...++++++.+..++... ..++|.++++++...+||+++|+||||+.|.+.+++++.+.++++++++....+. .
T Consensus 128 ~~plivsi~g~~~~~~~~----~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~--~ 201 (327)
T cd04738 128 GGPLGVNIGKNKDTPLED----AVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLG--K 201 (327)
T ss_pred CCeEEEEEeCCCCCcccc----cHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcc--c
Confidence 345899998877543222 2358999999988889999999999999998888999999999999998764221 2
Q ss_pred CCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcc---------hhhhhhh---HHHHHHHHH
Q psy5880 99 LPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTAN---------LRKLQAK---DQLKHLLKT 166 (328)
Q Consensus 99 ~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g---------~~~~~~~---~~~~~i~~~ 166 (328)
..|+++|++++.+ .+.+.++++.+.+++ +|+|.++-+-+.... ..-...+ ....+.+..
T Consensus 202 ~~Pv~vKl~~~~~-------~~~~~~ia~~l~~aG--ad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~ 272 (327)
T cd04738 202 KVPLLVKIAPDLS-------DEELEDIADVALEHG--VDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRE 272 (327)
T ss_pred CCCeEEEeCCCCC-------HHHHHHHHHHHHHcC--CcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHH
Confidence 3799999998753 345677888777776 999986422111100 0000011 123455555
Q ss_pred HHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEec
Q psy5880 167 VVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 167 v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
+++. ++ .++||+. ..++.. ..++.+.+ .+|||.+.+..
T Consensus 273 l~~~---~~--~~ipIi~--~GGI~t--~~da~e~l---~aGAd~V~vg~ 310 (327)
T cd04738 273 LYKL---TG--GKIPIIG--VGGISS--GEDAYEKI---RAGASLVQLYT 310 (327)
T ss_pred HHHH---hC--CCCcEEE--ECCCCC--HHHHHHHH---HcCCCHHhccH
Confidence 5554 21 2577654 344432 34555555 48999986553
No 84
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.03 E-value=2.1e-08 Score=92.98 Aligned_cols=163 Identities=18% Similarity=0.203 Sum_probs=109.1
Q ss_pred HHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhc
Q psy5880 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVL 203 (328)
Q Consensus 124 ~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~ 203 (328)
+.++....++.+.|+|.|..+ | | +-..+.+.++.||+. ++-+.++|=.. .+ .+-++.|
T Consensus 110 er~~~L~~a~~~~d~iviD~A--h--G-----hs~~~i~~ik~ir~~-------~p~~~viaGNV-~T----~e~a~~L- 167 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVA--N--G-----YSEHFVEFVKLVREA-------FPEHTIMAGNV-VT----GEMVEEL- 167 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECC--C--C-----cHHHHHHHHHHHHhh-------CCCCeEEEecc-cC----HHHHHHH-
Confidence 334444444446899998777 3 2 224566777777765 34456666322 23 3456777
Q ss_pred cccCCccEEEEe-----cCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC-CccEEEecCCCCHHHHHHH
Q psy5880 204 DSKCKVDGLIVS-----NTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG-KLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 204 ~~~~G~d~i~~~-----n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~-~ipvia~GGI~s~~da~~~ 277 (328)
.++|+|+|.++ +.+.. . ..|-+. ..+..+..+++...+ ++|||+-|||+++-|+.++
T Consensus 168 -i~aGAD~ikVgiGpGSicttR-----------~---~~Gvg~--pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KA 230 (343)
T TIGR01305 168 -ILSGADIVKVGIGPGSVCTTR-----------T---KTGVGY--PQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKA 230 (343)
T ss_pred -HHcCCCEEEEcccCCCcccCc-----------e---eCCCCc--CHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHH
Confidence 89999999776 11110 0 111110 145667777666544 6999999999999999999
Q ss_pred HHhccCeeeehhHHh--------------------------------------------------hcCc--hHHHHHHHH
Q psy5880 278 IKAGASLVQIYTSFV--------------------------------------------------YHGP--PLVTRIKSE 305 (328)
Q Consensus 278 l~~GAd~V~vg~a~l--------------------------------------------------~~gp--~~~~~i~~~ 305 (328)
|.+|||+||+|+.+- ++|+ +++.++..+
T Consensus 231 LA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gG 310 (343)
T TIGR01305 231 FGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGG 310 (343)
T ss_pred HHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHH
Confidence 999999999997552 0111 356788889
Q ss_pred HHHHHHHhCCCCHHHHhccc
Q psy5880 306 LEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 306 l~~~m~~~g~~si~e~~G~~ 325 (328)
|+.-|.-.|.++|.||+-++
T Consensus 311 lrs~m~Y~Ga~~i~el~~~a 330 (343)
T TIGR01305 311 LRSACTYVGAAKLKELSKRA 330 (343)
T ss_pred HHHHhhccCcCcHHHHHhCC
Confidence 99999999999999997543
No 85
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=99.03 E-value=4e-09 Score=102.06 Aligned_cols=153 Identities=24% Similarity=0.313 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCC
Q psy5880 156 AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG 235 (328)
Q Consensus 156 ~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg 235 (328)
..+.+.+++..+|++. ...||.||+...... ..++--. .++++|.|++.+...+. +..|.....
T Consensus 286 sieDLaqlI~dLk~~~------~~~~I~VKlva~~~v---~~iaagv--akA~AD~I~IdG~~GGT--GAsP~~~~~--- 349 (485)
T COG0069 286 SIEDLAQLIKDLKEAN------PWAKISVKLVAEHGV---GTIAAGV--AKAGADVITIDGADGGT--GASPLTSID--- 349 (485)
T ss_pred CHHHHHHHHHHHHhcC------CCCeEEEEEecccch---HHHHhhh--hhccCCEEEEcCCCCcC--CCCcHhHhh---
Confidence 4567888888888873 346799999987653 3333335 68999999998654321 000000000
Q ss_pred CCCCcCchHHHHHHHHHHHH--cCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh---------------------
Q psy5880 236 LSGEPLRNKSTELISEMYKL--TKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV--------------------- 292 (328)
Q Consensus 236 ~sg~~~~~~~l~~v~~i~~~--~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l--------------------- 292 (328)
+.|-| |..++..+.+.-.. +..++-|++.||+.|+.|+.+++.+|||.|.+||+.|
T Consensus 350 ~~GiP-~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIa 428 (485)
T COG0069 350 HAGIP-WELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIA 428 (485)
T ss_pred cCCch-HHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceee
Confidence 11211 12233333332221 3457999999999999999999999999999999876
Q ss_pred hcCch----------------HHHHHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 293 YHGPP----------------LVTRIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 293 ~~gp~----------------~~~~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
.++|. ++.-+.+++.++|...|+++++||+|..
T Consensus 429 Tqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~~~l~el~g~~ 477 (485)
T COG0069 429 TQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGKRSLSELIGRT 477 (485)
T ss_pred ecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhcch
Confidence 12343 3455678899999999999999999853
No 86
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.02 E-value=3.2e-09 Score=95.93 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=93.5
Q ss_pred ccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCE---EEEeCCCCC--hhhHHHHHHHhccccCCcc
Q psy5880 136 AHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPI---LVKIAPDLS--LDEKKDIADVVLDSKCKVD 210 (328)
Q Consensus 136 ~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv---~vKl~~~~~--~~~~~~~a~~l~~~~~G~d 210 (328)
++.+.++. ....+++.+.++++...+. +. ..+|+ .+|+. ++. ..+..++++.+ .+.|++
T Consensus 98 a~kvviGs--------~~l~~p~l~~~i~~~~~~~---i~--vsld~~~~~v~~~-Gw~~~~~~~~~~~~~l--~~~G~~ 161 (241)
T PRK14024 98 CARVNIGT--------AALENPEWCARVIAEHGDR---VA--VGLDVRGHTLAAR-GWTRDGGDLWEVLERL--DSAGCS 161 (241)
T ss_pred CCEEEECc--------hHhCCHHHHHHHHHHhhhh---EE--EEEEEeccEeccC-CeeecCccHHHHHHHH--HhcCCC
Confidence 66665432 3455788888888776543 11 23455 55553 332 23467889999 999999
Q ss_pred EEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH---hccCeeee
Q psy5880 211 GLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK---AGASLVQI 287 (328)
Q Consensus 211 ~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~---~GAd~V~v 287 (328)
.+++++.+.. |.++|+ .++.++++++.++ +|||++|||+|.+|+.++.+ .||+.|++
T Consensus 162 ~iiv~~~~~~-------------g~~~G~-----d~~~i~~i~~~~~--ipviasGGi~s~~D~~~l~~~~~~GvdgV~i 221 (241)
T PRK14024 162 RYVVTDVTKD-------------GTLTGP-----NLELLREVCARTD--APVVASGGVSSLDDLRALAELVPLGVEGAIV 221 (241)
T ss_pred EEEEEeecCC-------------CCccCC-----CHHHHHHHHhhCC--CCEEEeCCCCCHHHHHHHhhhccCCccEEEE
Confidence 9999987654 556664 3688889988876 99999999999999999874 59999999
Q ss_pred hhHHhhcCchHHHHH
Q psy5880 288 YTSFVYHGPPLVTRI 302 (328)
Q Consensus 288 g~a~l~~gp~~~~~i 302 (328)
||+++ .|+--+.++
T Consensus 222 gra~~-~g~~~~~~~ 235 (241)
T PRK14024 222 GKALY-AGAFTLPEA 235 (241)
T ss_pred eHHHH-cCCCCHHHH
Confidence 99997 455444443
No 87
>KOG2334|consensus
Probab=99.01 E-value=1.6e-09 Score=101.70 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=115.2
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCc------chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEK 195 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~ 195 (328)
.+--+++|.....-..++.+|++||-.- |...+.+++.+..|+..+.+. .++|+.+||+.--+.++.
T Consensus 93 a~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~-------~~vpvtckIR~L~s~edt 165 (477)
T KOG2334|consen 93 AELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKG-------NKVPVTCKIRLLDSKEDT 165 (477)
T ss_pred HHHHHHHHHHhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhc-------CcccceeEEEecCCcccH
Confidence 4444566666665577899999999852 334566788899999888776 689999999976677788
Q ss_pred HHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCC---HH
Q psy5880 196 KDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFS---GK 272 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s---~~ 272 (328)
.++++.+ .+.|+..|.+|.++...- +-.|...+.++.+.+.++. +|||++||+.+ ..
T Consensus 166 L~lv~ri--~~tgi~ai~vh~rt~d~r-----------------~~~~~~~~~i~~i~~~~~~-V~vi~ng~~~~~e~y~ 225 (477)
T KOG2334|consen 166 LKLVKRI--CATGIAAITVHCRTRDER-----------------NQEPATKDYIREIAQACQM-VPVIVNGGSMDIEQYS 225 (477)
T ss_pred HHHHHHH--HhcCCceEEEEeeccccC-----------------CCCCCCHHHHHHHHHHhcc-ceEeeccchhhHHhhh
Confidence 9999999 999999999999876421 1123335677888887763 99999999999 77
Q ss_pred HHHHHHH-hccCeeeehhHHhhcCchH
Q psy5880 273 DAFEKIK-AGASLVQIYTSFVYHGPPL 298 (328)
Q Consensus 273 da~~~l~-~GAd~V~vg~a~l~~gp~~ 298 (328)
|+.++.+ .|++.||++|+... +|..
T Consensus 226 Di~~~~~~~~~~~vmiAR~A~~-n~Si 251 (477)
T KOG2334|consen 226 DIEDFQEKTGADSVMIARAAES-NPSI 251 (477)
T ss_pred hHHHHHHHhccchhhhhHhhhc-CCce
Confidence 8888776 89999999999874 4643
No 88
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.00 E-value=1.6e-08 Score=100.29 Aligned_cols=165 Identities=18% Similarity=0.214 Sum_probs=106.5
Q ss_pred HHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEE-eCCCCChhhHHHHHHHh
Q psy5880 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVK-IAPDLSLDEKKDIADVV 202 (328)
Q Consensus 124 ~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vK-l~~~~~~~~~~~~a~~l 202 (328)
+-++.+.+++ +|.|.+..+ +. . .....+.++.||+.. .+.+|+++ +. + .+-++.+
T Consensus 251 ~r~~~l~~ag--~d~i~iD~~--~g--~-----~~~~~~~i~~ik~~~------p~~~vi~g~v~---t----~e~a~~a 306 (505)
T PLN02274 251 ERLEHLVKAG--VDVVVLDSS--QG--D-----SIYQLEMIKYIKKTY------PELDVIGGNVV---T----MYQAQNL 306 (505)
T ss_pred HHHHHHHHcC--CCEEEEeCC--CC--C-----cHHHHHHHHHHHHhC------CCCcEEEecCC---C----HHHHHHH
Confidence 4444444445 999886553 42 1 123456777777652 35788776 32 2 2336667
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhcc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGA 282 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GA 282 (328)
.++|+|+|.++++....- +. ...++..-+. ..++..+.++.+..+ +|||+-|||+++.|+.++|.+||
T Consensus 307 --~~aGaD~i~vg~g~G~~~-~t-----~~~~~~g~~~--~~~i~~~~~~~~~~~--vpVIadGGI~~~~di~kAla~GA 374 (505)
T PLN02274 307 --IQAGVDGLRVGMGSGSIC-TT-----QEVCAVGRGQ--ATAVYKVASIAAQHG--VPVIADGGISNSGHIVKALTLGA 374 (505)
T ss_pred --HHcCcCEEEECCCCCccc-cC-----ccccccCCCc--ccHHHHHHHHHHhcC--CeEEEeCCCCCHHHHHHHHHcCC
Confidence 799999998864322100 00 0001111111 124556777777665 99999999999999999999999
Q ss_pred CeeeehhHHh-------------------h------------------------------------cCc--hHHHHHHHH
Q psy5880 283 SLVQIYTSFV-------------------Y------------------------------------HGP--PLVTRIKSE 305 (328)
Q Consensus 283 d~V~vg~a~l-------------------~------------------------------------~gp--~~~~~i~~~ 305 (328)
++||+|++|. | +|+ +++..+..+
T Consensus 375 ~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~v~egv~~~v~~~g~~~~~~~~~~~g 454 (505)
T PLN02274 375 STVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLKIAQGVSGAVADKGSVLKFVPYTMQA 454 (505)
T ss_pred CEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcccccCCceEEecccCCCHHHHHHHHHHH
Confidence 9999999885 0 011 245667778
Q ss_pred HHHHHHHhCCCCHHHHhcc
Q psy5880 306 LEELLQKEGYNSVSQAVGA 324 (328)
Q Consensus 306 l~~~m~~~g~~si~e~~G~ 324 (328)
++.-|.-.|.+||.||+-+
T Consensus 455 ~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 455 VKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred HHHhhhhcCcchHHHHHhh
Confidence 8888888888888888755
No 89
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.99 E-value=1.1e-08 Score=87.31 Aligned_cols=122 Identities=17% Similarity=0.256 Sum_probs=78.5
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
++|.|-+..+- . .| |+.+.++++.|++. . .+++..++. +++ +..+ .++|+|.|..
T Consensus 64 GadIIAlDaT~--R--~R----p~~l~~li~~i~~~-------~-~l~MADist------~ee-~~~A--~~~G~D~I~T 118 (192)
T PF04131_consen 64 GADIIALDATD--R--PR----PETLEELIREIKEK-------Y-QLVMADIST------LEE-AINA--AELGFDIIGT 118 (192)
T ss_dssp T-SEEEEE-SS--S--S-----SS-HHHHHHHHHHC-------T-SEEEEE-SS------HHH-HHHH--HHTT-SEEE-
T ss_pred CCCEEEEecCC--C--CC----CcCHHHHHHHHHHh-------C-cEEeeecCC------HHH-HHHH--HHcCCCEEEc
Confidence 38999877652 1 12 25688889888875 3 788988865 334 3445 6899998842
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH 294 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~ 294 (328)
|..++. .++.. ....+++++++++. + +|||+-|+|+||+++.+++++||++|.||+++-
T Consensus 119 --TLsGYT------------~~t~~--~~pD~~lv~~l~~~-~--~pvIaEGri~tpe~a~~al~~GA~aVVVGsAIT-- 177 (192)
T PF04131_consen 119 --TLSGYT------------PYTKG--DGPDFELVRELVQA-D--VPVIAEGRIHTPEQAAKALELGAHAVVVGSAIT-- 177 (192)
T ss_dssp --TTTTSS------------TTSTT--SSHHHHHHHHHHHT-T--SEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH--
T ss_pred --ccccCC------------CCCCC--CCCCHHHHHHHHhC-C--CcEeecCCCCCHHHHHHHHhcCCeEEEECcccC--
Confidence 223321 01111 34568999999875 4 999999999999999999999999999999993
Q ss_pred CchHHHHH
Q psy5880 295 GPPLVTRI 302 (328)
Q Consensus 295 gp~~~~~i 302 (328)
.|+++.+.
T Consensus 178 rP~~It~~ 185 (192)
T PF04131_consen 178 RPQEITKR 185 (192)
T ss_dssp -HHHHHHH
T ss_pred CHHHHHHH
Confidence 49876443
No 90
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=98.96 E-value=5.9e-09 Score=111.86 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCC
Q psy5880 156 AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG 235 (328)
Q Consensus 156 ~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg 235 (328)
..+.+.+++..+|++- ...||.||+..... +-+++..+ .++|+|+|++.+...+. +..|.....
T Consensus 979 SieDL~qlI~~Lk~~~------~~~~I~VKl~a~~~---vg~ia~gv--aka~aD~I~IdG~~GGT--GAap~~~~~--- 1042 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVN------PKALVSVKLVSEPG---VGTIATGV--AKAYADLITISGYDGGT--GASPLTSVK--- 1042 (1485)
T ss_pred CHHHHHHHHHHHHHhC------CCCcEEEEEccCCC---ccHHHhCh--hhcCCCEEEEeCCCCCc--ccccHHHHh---
Confidence 4566888888888762 47899999987533 23466556 68999999998754321 000000000
Q ss_pred CCCCcCchHHHHHHHH-HHH-HcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh--------------------
Q psy5880 236 LSGEPLRNKSTELISE-MYK-LTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY-------------------- 293 (328)
Q Consensus 236 ~sg~~~~~~~l~~v~~-i~~-~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~-------------------- 293 (328)
..|.| +..++..+.+ +.+ -+.+++.+++.||+.|+.|+.+++.+|||.|.+||++|.
T Consensus 1043 ~~GlP-~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGia 1121 (1485)
T PRK11750 1043 YAGSP-WELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVA 1121 (1485)
T ss_pred hCCcc-HHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEe
Confidence 11211 1233333332 222 234579999999999999999999999999999998761
Q ss_pred -cCc---------------hHHHHHHHHHHHHHHHhCCCCHHHHhcc
Q psy5880 294 -HGP---------------PLVTRIKSELEELLQKEGYNSVSQAVGA 324 (328)
Q Consensus 294 -~gp---------------~~~~~i~~~l~~~m~~~g~~si~e~~G~ 324 (328)
++| .++.-+.++++++|...|++|++|++|.
T Consensus 1122 Tqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~la~lG~~s~~elvGr 1168 (1485)
T PRK11750 1122 TQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMAQLGVRSLEDLIGR 1168 (1485)
T ss_pred ccCHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcCc
Confidence 122 1345566789999999999999999985
No 91
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.96 E-value=4.5e-08 Score=97.03 Aligned_cols=166 Identities=16% Similarity=0.214 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.+.++++.+++ +|.|+++.+.-++ ....+.++.+++.. .++||++. .-.+ .+-++.+
T Consensus 243 ~~~~~~l~~ag--~d~i~id~a~G~s---------~~~~~~i~~ik~~~------~~~~v~aG--~V~t----~~~a~~~ 299 (495)
T PTZ00314 243 IERAAALIEAG--VDVLVVDSSQGNS---------IYQIDMIKKLKSNY------PHVDIIAG--NVVT----ADQAKNL 299 (495)
T ss_pred HHHHHHHHHCC--CCEEEEecCCCCc---------hHHHHHHHHHHhhC------CCceEEEC--CcCC----HHHHHHH
Confidence 34444444444 9999988762222 12356677777652 36788884 2223 2345667
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhcc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGA 282 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GA 282 (328)
.++|+|+|.+..+..+ ..+. ...-+...|.+ .++..+.++.+..+ +|||+.|||+++.|+.+++.+||
T Consensus 300 --~~aGad~I~vg~g~Gs-~~~t-----~~~~~~g~p~~--~ai~~~~~~~~~~~--v~vIadGGi~~~~di~kAla~GA 367 (495)
T PTZ00314 300 --IDAGADGLRIGMGSGS-ICIT-----QEVCAVGRPQA--SAVYHVARYARERG--VPCIADGGIKNSGDICKALALGA 367 (495)
T ss_pred --HHcCCCEEEECCcCCc-cccc-----chhccCCCChH--HHHHHHHHHHhhcC--CeEEecCCCCCHHHHHHHHHcCC
Confidence 8999999977422110 0000 00011111111 12333444444444 99999999999999999999999
Q ss_pred CeeeehhHHhh--------------------------------------------------------cCc--hHHHHHHH
Q psy5880 283 SLVQIYTSFVY--------------------------------------------------------HGP--PLVTRIKS 304 (328)
Q Consensus 283 d~V~vg~a~l~--------------------------------------------------------~gp--~~~~~i~~ 304 (328)
++||+|+.|.. +|+ +++..+..
T Consensus 368 ~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~ 447 (495)
T PTZ00314 368 DCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIKVAQGVSGSVVDKGSVAKLIPYLVK 447 (495)
T ss_pred CEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhcccccccccccccccccCCceEEeeecCCcHHHHHHHHHH
Confidence 99999998741 021 35678888
Q ss_pred HHHHHHHHhCCCCHHHHhc
Q psy5880 305 ELEELLQKEGYNSVSQAVG 323 (328)
Q Consensus 305 ~l~~~m~~~g~~si~e~~G 323 (328)
+++.-|.-.|..||.||+-
T Consensus 448 gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 448 GVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred HHHHHHHhhCCCcHHHHHh
Confidence 9999999999999999976
No 92
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.95 E-value=3.6e-08 Score=97.04 Aligned_cols=167 Identities=21% Similarity=0.179 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
..+.++.....+ +|.|.+..+.++ +..+.+.+++|++.. .++||++ ....+ .+-++.
T Consensus 226 ~~~ra~~Lv~aG--Vd~i~~D~a~g~---------~~~~~~~i~~i~~~~------~~~~vi~--g~~~t----~~~~~~ 282 (475)
T TIGR01303 226 VGGKAKALLDAG--VDVLVIDTAHGH---------QVKMISAIKAVRALD------LGVPIVA--GNVVS----AEGVRD 282 (475)
T ss_pred HHHHHHHHHHhC--CCEEEEeCCCCC---------cHHHHHHHHHHHHHC------CCCeEEE--eccCC----HHHHHH
Confidence 344444444444 899998777433 245778888888752 5789998 22234 344566
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCC--CcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG--EPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg--~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
| .++|+|+|.+.......- + ..++.| .+-....++..+.+++. + +|||+.|||+++.|+.++|.
T Consensus 283 l--~~~G~d~i~vg~g~Gs~~-t--------tr~~~~~g~~~~~a~~~~~~~~~~~-~--~~viadGgi~~~~di~kala 348 (475)
T TIGR01303 283 L--LEAGANIIKVGVGPGAMC-T--------TRMMTGVGRPQFSAVLECAAEARKL-G--GHVWADGGVRHPRDVALALA 348 (475)
T ss_pred H--HHhCCCEEEECCcCCccc-c--------CccccCCCCchHHHHHHHHHHHHHc-C--CcEEEeCCCCCHHHHHHHHH
Confidence 7 899999998653321100 0 011222 11111123333333333 4 99999999999999999999
Q ss_pred hccCeeeehhHHh----------h---------------------------------------------------cCc--
Q psy5880 280 AGASLVQIYTSFV----------Y---------------------------------------------------HGP-- 296 (328)
Q Consensus 280 ~GAd~V~vg~a~l----------~---------------------------------------------------~gp-- 296 (328)
+||++||+|+.|- + +|+
T Consensus 349 ~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~v~eGv~~~~~~~~~~~g~~~ 428 (475)
T TIGR01303 349 AGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKALFEEGISTSRMGLDPDRGGVE 428 (475)
T ss_pred cCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhccccccCceecccccccCCCCCHH
Confidence 9999999998761 1 111
Q ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 297 PLVTRIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 297 ~~~~~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
+++..+..+|+.-|.-.|.++|+||+-++
T Consensus 429 ~~i~~~~~gl~s~~~y~g~~~i~~~~~~~ 457 (475)
T TIGR01303 429 DLIDHIISGVRSSCTYAGASSLEEFHERA 457 (475)
T ss_pred HHHHHHHHHHHHHhhhcCCCcHHHHHhCC
Confidence 35677888899999999999999998654
No 93
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.94 E-value=9e-09 Score=93.05 Aligned_cols=123 Identities=17% Similarity=0.211 Sum_probs=84.7
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC------------CCChhhHHHHHHHh
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP------------DLSLDEKKDIADVV 202 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~------------~~~~~~~~~~a~~l 202 (328)
+++.+.++..+ ..+++.+.++++.+.+. ..-+++-+|... ..+..+..++++.+
T Consensus 93 G~~~v~ig~~~--------~~~p~~~~~i~~~~~~~------~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 158 (243)
T cd04731 93 GADKVSINSAA--------VENPELIREIAKRFGSQ------CVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEV 158 (243)
T ss_pred CCceEEECchh--------hhChHHHHHHHHHcCCC------CEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHH
Confidence 38888876442 23556666666554211 012344444322 12234567888999
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh-c
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA-G 281 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~-G 281 (328)
.+.|+++|.+++.... |...|. .+++++++++.++ +|||++|||++++|+.++++. |
T Consensus 159 --~~~G~d~i~v~~i~~~-------------g~~~g~-----~~~~i~~i~~~~~--~pvia~GGi~~~~di~~~l~~~g 216 (243)
T cd04731 159 --EELGAGEILLTSMDRD-------------GTKKGY-----DLELIRAVSSAVN--IPVIASGGAGKPEHFVEAFEEGG 216 (243)
T ss_pred --HHCCCCEEEEeccCCC-------------CCCCCC-----CHHHHHHHHhhCC--CCEEEeCCCCCHHHHHHHHHhCC
Confidence 8999999999875432 112221 3678888888876 999999999999999999996 8
Q ss_pred cCeeeehhHHhh
Q psy5880 282 ASLVQIYTSFVY 293 (328)
Q Consensus 282 Ad~V~vg~a~l~ 293 (328)
||+|++||+++.
T Consensus 217 ~dgv~vg~al~~ 228 (243)
T cd04731 217 ADAALAASIFHF 228 (243)
T ss_pred CCEEEEeHHHHc
Confidence 999999999963
No 94
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.94 E-value=5.4e-08 Score=96.42 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=102.2
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
++|.+++. +.|.. .....+.++.+++. .+.++.|+-.--.+. +-++.| .++|+|+|.+
T Consensus 254 Gvd~i~vd-~a~g~--------~~~~~~~i~~ir~~-------~~~~~~V~aGnV~t~----e~a~~l--i~aGAd~I~v 311 (502)
T PRK07107 254 GADVLCID-SSEGY--------SEWQKRTLDWIREK-------YGDSVKVGAGNVVDR----EGFRYL--AEAGADFVKV 311 (502)
T ss_pred CCCeEeec-Ccccc--------cHHHHHHHHHHHHh-------CCCCceEEeccccCH----HHHHHH--HHcCCCEEEE
Confidence 49999976 22221 12345666666664 334566666554553 345667 7999999988
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc-------CCCccEEEecCCCCHHHHHHHHHhccCeeee
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT-------KGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-------~~~ipvia~GGI~s~~da~~~l~~GAd~V~v 287 (328)
++...+ ..+. ...-|. | +..+..+.+++++. +.++|||+-|||+++.|+.++|.+|||+||+
T Consensus 312 g~g~Gs-~c~t-----r~~~~~-g----~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 312 GIGGGS-ICIT-----REQKGI-G----RGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred CCCCCc-Cccc-----ccccCC-C----ccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 654332 0000 000111 1 11234444444432 3349999999999999999999999999999
Q ss_pred hhHHhh-----------------------------------------------------cCc--hHHHHHHHHHHHHHHH
Q psy5880 288 YTSFVY-----------------------------------------------------HGP--PLVTRIKSELEELLQK 312 (328)
Q Consensus 288 g~a~l~-----------------------------------------------------~gp--~~~~~i~~~l~~~m~~ 312 (328)
|+.+-- +|+ +++..+..+|+.-|.-
T Consensus 381 G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~glrs~~~y 460 (502)
T PRK07107 381 GRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCN 460 (502)
T ss_pred ChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccccCCccEEEecCCCCHHHHHHHHHHHHHHhhhc
Confidence 997721 011 3467788889999999
Q ss_pred hCCCCHHHHhccc
Q psy5880 313 EGYNSVSQAVGAA 325 (328)
Q Consensus 313 ~g~~si~e~~G~~ 325 (328)
.|.+||.||+-++
T Consensus 461 ~g~~~i~~l~~~~ 473 (502)
T PRK07107 461 CGALSIPELQQKA 473 (502)
T ss_pred cCCCcHHHHHhCC
Confidence 9999999998654
No 95
>PLN02591 tryptophan synthase
Probab=98.94 E-value=1.4e-07 Score=85.24 Aligned_cols=163 Identities=18% Similarity=0.235 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhcccccEEEEc--cCCCCCcc-------hhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVN--VSSPNTAN-------LRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL 190 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN--~scPn~~g-------~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~ 190 (328)
+...+++.+..+.+ +|.|||- ||-|..+| .+.+.++-.+.++++.+++.++. .++|+++- +...
T Consensus 16 e~~~~~~~~l~~~G--ad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~----~~~p~ilm-~Y~N 88 (250)
T PLN02591 16 DTTAEALRLLDACG--ADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ----LSCPIVLF-TYYN 88 (250)
T ss_pred HHHHHHHHHHHHCC--CCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC----CCCCEEEE-eccc
Confidence 34445555555544 9999987 46566543 12234444455666666666532 57897643 2210
Q ss_pred C--hhhHHHHHHHhccccCCccEEEEecCCcc---------------------------chh-h--hcccc--ccccCCC
Q psy5880 191 S--LDEKKDIADVVLDSKCKVDGLIVSNTTVD---------------------------RYE-Y--LDARY--KEETGGL 236 (328)
Q Consensus 191 ~--~~~~~~~a~~l~~~~~G~d~i~~~n~~~~---------------------------~~~-~--~~~~~--~~~~gg~ 236 (328)
. .--..++.+.+ .++|+||+.+-.=... +.. . ..+.. -....|.
T Consensus 89 ~i~~~G~~~F~~~~--~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~Gv 166 (250)
T PLN02591 89 PILKRGIDKFMATI--KEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGV 166 (250)
T ss_pred HHHHhHHHHHHHHH--HHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCC
Confidence 0 00234455555 5666666544321110 000 0 00000 0112344
Q ss_pred CCCc--CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 237 SGEP--LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 237 sg~~--~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
+|.. ..+...+.++++|+..+ +||+..-||++++++.+++..|||+|.|||+++.
T Consensus 167 TG~~~~~~~~~~~~i~~vk~~~~--~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk 223 (250)
T PLN02591 167 TGARASVSGRVESLLQELKEVTD--KPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVK 223 (250)
T ss_pred cCCCcCCchhHHHHHHHHHhcCC--CceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 5542 12233566889998765 9999999999999999999999999999999974
No 96
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.93 E-value=2.5e-08 Score=88.87 Aligned_cols=135 Identities=18% Similarity=0.253 Sum_probs=87.3
Q ss_pred HHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhc
Q psy5880 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVL 203 (328)
Q Consensus 124 ~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~ 203 (328)
++++.+..++ +|++.+... ..+ . ...+...++++.+++. .++|+++... +.+ + ++.+
T Consensus 79 ~~v~~a~~aG--ad~I~~d~~--~~~--~--p~~~~~~~~i~~~~~~-------~~i~vi~~v~---t~e---e-~~~a- 135 (221)
T PRK01130 79 KEVDALAAAG--ADIIALDAT--LRP--R--PDGETLAELVKRIKEY-------PGQLLMADCS---TLE---E-GLAA- 135 (221)
T ss_pred HHHHHHHHcC--CCEEEEeCC--CCC--C--CCCCCHHHHHHHHHhC-------CCCeEEEeCC---CHH---H-HHHH-
Confidence 4456666666 898876433 210 0 0013456677766652 3678886543 322 2 3567
Q ss_pred cccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccC
Q psy5880 204 DSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGAS 283 (328)
Q Consensus 204 ~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd 283 (328)
.++|+|++.++++... +.-. ...+..+..++++++.++ +||++.|||++++++.++++.|||
T Consensus 136 -~~~G~d~i~~~~~g~t-------------~~~~--~~~~~~~~~i~~i~~~~~--iPvia~GGI~t~~~~~~~l~~Gad 197 (221)
T PRK01130 136 -QKLGFDFIGTTLSGYT-------------EETK--KPEEPDFALLKELLKAVG--CPVIAEGRINTPEQAKKALELGAH 197 (221)
T ss_pred -HHcCCCEEEcCCceee-------------cCCC--CCCCcCHHHHHHHHHhCC--CCEEEECCCCCHHHHHHHHHCCCC
Confidence 7899999876443211 0000 011123578889988886 999999999999999999999999
Q ss_pred eeeehhHHhhcCchHHHH
Q psy5880 284 LVQIYTSFVYHGPPLVTR 301 (328)
Q Consensus 284 ~V~vg~a~l~~gp~~~~~ 301 (328)
+|++||+++ + |.++.+
T Consensus 198 gV~iGsai~-~-~~~~~~ 213 (221)
T PRK01130 198 AVVVGGAIT-R-PEEITK 213 (221)
T ss_pred EEEEchHhc-C-CHHHHH
Confidence 999999986 4 554433
No 97
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.92 E-value=3.3e-08 Score=88.03 Aligned_cols=133 Identities=20% Similarity=0.270 Sum_probs=87.9
Q ss_pred HHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhcc
Q psy5880 125 SVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLD 204 (328)
Q Consensus 125 ~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~ 204 (328)
.++.+..++ +|++.++.+.-..+ +.+...++++.+++. .++|+++... +. .+ +..+
T Consensus 84 ~~~~a~~aG--ad~I~~~~~~~~~p------~~~~~~~~i~~~~~~-------g~~~iiv~v~---t~---~e-a~~a-- 139 (219)
T cd04729 84 EVDALAAAG--ADIIALDATDRPRP------DGETLAELIKRIHEE-------YNCLLMADIS---TL---EE-ALNA-- 139 (219)
T ss_pred HHHHHHHcC--CCEEEEeCCCCCCC------CCcCHHHHHHHHHHH-------hCCeEEEECC---CH---HH-HHHH--
Confidence 556666666 99998876531111 112466777777664 3578888653 22 22 3556
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCe
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASL 284 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~ 284 (328)
.++|+|++.+.+.... . .. .... ...++.++++++.++ +||++.|||++++++.+++..|||+
T Consensus 140 ~~~G~d~i~~~~~g~t-~--------~~-~~~~-----~~~~~~l~~i~~~~~--ipvia~GGI~~~~~~~~~l~~Gadg 202 (219)
T cd04729 140 AKLGFDIIGTTLSGYT-E--------ET-AKTE-----DPDFELLKELRKALG--IPVIAEGRINSPEQAAKALELGADA 202 (219)
T ss_pred HHcCCCEEEccCcccc-c--------cc-cCCC-----CCCHHHHHHHHHhcC--CCEEEeCCCCCHHHHHHHHHCCCCE
Confidence 7899999865432111 0 00 0001 123578888988885 9999999999999999999999999
Q ss_pred eeehhHHhhcCchHHH
Q psy5880 285 VQIYTSFVYHGPPLVT 300 (328)
Q Consensus 285 V~vg~a~l~~gp~~~~ 300 (328)
|++||+++ + ++.+.
T Consensus 203 V~vGsal~-~-~~~~~ 216 (219)
T cd04729 203 VVVGSAIT-R-PEHIT 216 (219)
T ss_pred EEEchHHh-C-hHhHh
Confidence 99999996 3 44443
No 98
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.89 E-value=2.7e-08 Score=89.75 Aligned_cols=89 Identities=22% Similarity=0.301 Sum_probs=71.8
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..++++.+ .+.|++.|+++++... |...|+ .++.++++++.++ +||+++|||++++|
T Consensus 150 ~~~~~~~~~--~~~G~~~i~~~~~~~~-------------g~~~g~-----~~~~i~~i~~~~~--iPvia~GGI~~~~d 207 (241)
T PRK13585 150 TPVEAAKRF--EELGAGSILFTNVDVE-------------GLLEGV-----NTEPVKELVDSVD--IPVIASGGVTTLDD 207 (241)
T ss_pred CHHHHHHHH--HHcCCCEEEEEeecCC-------------CCcCCC-----CHHHHHHHHHhCC--CCEEEeCCCCCHHH
Confidence 467889999 8999999998876432 223332 3577888888886 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+.+++.+||+.|++||+++ +++..+.+++..
T Consensus 208 i~~~~~~Ga~gv~vgsa~~-~~~~~~~~~~~~ 238 (241)
T PRK13585 208 LRALKEAGAAGVVVGSALY-KGKFTLEEAIEA 238 (241)
T ss_pred HHHHHHcCCCEEEEEHHHh-cCCcCHHHHHHH
Confidence 9999999999999999997 568777666543
No 99
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.89 E-value=8.3e-09 Score=93.28 Aligned_cols=90 Identities=21% Similarity=0.309 Sum_probs=75.9
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .++|++.+++++.... +..+ +..++.++++++.++ +||+++|||++.+|
T Consensus 28 d~~~~a~~~--~~~G~~~i~i~d~~~~--------------~~~~----~~~~~~i~~i~~~~~--~pv~~~GGI~s~~d 85 (243)
T cd04731 28 DPVELAKRY--NEQGADELVFLDITAS--------------SEGR----ETMLDVVERVAEEVF--IPLTVGGGIRSLED 85 (243)
T ss_pred CHHHHHHHH--HHCCCCEEEEEcCCcc--------------cccC----cccHHHHHHHHHhCC--CCEEEeCCCCCHHH
Confidence 578999999 9999999999986532 1111 235788999999887 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+.+++..||+.|++||+++ ++|+++.++.+.+
T Consensus 86 ~~~~l~~G~~~v~ig~~~~-~~p~~~~~i~~~~ 117 (243)
T cd04731 86 ARRLLRAGADKVSINSAAV-ENPELIREIAKRF 117 (243)
T ss_pred HHHHHHcCCceEEECchhh-hChHHHHHHHHHc
Confidence 9999999999999999998 5799999987654
No 100
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.88 E-value=2.8e-07 Score=84.11 Aligned_cols=162 Identities=21% Similarity=0.202 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhcccccEEEEc--cCCCCCcc-------hhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVN--VSSPNTAN-------LRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL 190 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN--~scPn~~g-------~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~ 190 (328)
+...+++.+..+.+ +|.|||- ||-|..+| .+.+.++-.+..+++.+++.++. .++|+++- +...
T Consensus 29 ~~~~~~~~~l~~~G--ad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~----~~~p~vlm-~Y~N 101 (263)
T CHL00200 29 VITKKALKILDKKG--ADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE----IKAPIVIF-TYYN 101 (263)
T ss_pred HHHHHHHHHHHHCC--CCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC----CCCCEEEE-eccc
Confidence 44555555555555 9999987 46666543 12234444455566666665432 57897532 2211
Q ss_pred Ch--hhHHHHHHHhccccCCccEEEEecCCccc--------------------hhh---h------ccc-c--ccccCCC
Q psy5880 191 SL--DEKKDIADVVLDSKCKVDGLIVSNTTVDR--------------------YEY---L------DAR-Y--KEETGGL 236 (328)
Q Consensus 191 ~~--~~~~~~a~~l~~~~~G~d~i~~~n~~~~~--------------------~~~---~------~~~-~--~~~~gg~ 236 (328)
.. --+..+++.+ .++|+|++.++.=.... |.+ + ... . -...-|.
T Consensus 102 ~i~~~G~e~F~~~~--~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~Gv 179 (263)
T CHL00200 102 PVLHYGINKFIKKI--SQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGV 179 (263)
T ss_pred HHHHhCHHHHHHHH--HHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCC
Confidence 00 0134556666 66777776665321110 000 0 000 0 0012334
Q ss_pred CCC--cCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 237 SGE--PLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 237 sg~--~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
.|. .......++++++|+..+ .||..-+||++++++.++...|||+|.+||+++
T Consensus 180 TG~~~~~~~~~~~~i~~ir~~t~--~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 180 TGLKTELDKKLKKLIETIKKMTN--KPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred CCCCccccHHHHHHHHHHHHhcC--CCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 443 222334677888888776 999999999999999999999999999999996
No 101
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.87 E-value=2.1e-08 Score=90.02 Aligned_cols=120 Identities=20% Similarity=0.282 Sum_probs=83.9
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC---------------CChhhHHHHH
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD---------------LSLDEKKDIA 199 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~---------------~~~~~~~~~a 199 (328)
+++.+.+|.. ...+++.+.++.+...+ ..+++.+++..+ .+..+..+++
T Consensus 96 G~~~vilg~~--------~l~~~~~~~~~~~~~~~--------~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 159 (232)
T TIGR03572 96 GADKVSINTA--------ALENPDLIEEAARRFGS--------QCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWA 159 (232)
T ss_pred CCCEEEEChh--------HhcCHHHHHHHHHHcCC--------ceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHH
Confidence 3888887632 23455666666543211 125566665432 1123467889
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHH-HH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFE-KI 278 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~-~l 278 (328)
+.+ .++|++.|++++.... |...|+ .++.++++++.++ +||+++|||++.+|+.+ +.
T Consensus 160 ~~~--~~~G~d~i~i~~i~~~-------------g~~~g~-----~~~~~~~i~~~~~--ipvia~GGi~s~~di~~~l~ 217 (232)
T TIGR03572 160 REA--EQLGAGEILLNSIDRD-------------GTMKGY-----DLELIKTVSDAVS--IPVIALGGAGSLDDLVEVAL 217 (232)
T ss_pred HHH--HHcCCCEEEEeCCCcc-------------CCcCCC-----CHHHHHHHHhhCC--CCEEEECCCCCHHHHHHHHH
Confidence 999 8999999999874432 223332 3688899998887 99999999999999999 55
Q ss_pred HhccCeeeehhHHh
Q psy5880 279 KAGASLVQIYTSFV 292 (328)
Q Consensus 279 ~~GAd~V~vg~a~l 292 (328)
..||++|++|++|.
T Consensus 218 ~~gadgV~vg~a~h 231 (232)
T TIGR03572 218 EAGASAVAAASLFH 231 (232)
T ss_pred HcCCCEEEEehhhh
Confidence 69999999999983
No 102
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.86 E-value=3.3e-07 Score=83.49 Aligned_cols=164 Identities=19% Similarity=0.272 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcccccEEEEc--cCCCCCcc-------hhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEE--EeCC
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVN--VSSPNTAN-------LRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILV--KIAP 188 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN--~scPn~~g-------~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~v--Kl~~ 188 (328)
+...+++.+..+.+ +|.|||- ||-|..+| .+.+.++-.+..+++.+++.++. ..++|+.. ...|
T Consensus 24 ~~~~~~~~~l~~~G--ad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~---~~~~plv~m~Y~Np 98 (256)
T TIGR00262 24 ETSLEIIKTLIEAG--ADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQK---HPNIPIGLLTYYNL 98 (256)
T ss_pred HHHHHHHHHHHHcC--CCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCCEEEEEeccH
Confidence 34455555555555 9999986 46566543 12234444455555555555421 14678653 2222
Q ss_pred CCChhhHHHHHHHhccccCCccEEEEecCCccc--------------------hhhhc---------cc-c--ccccCCC
Q psy5880 189 DLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDR--------------------YEYLD---------AR-Y--KEETGGL 236 (328)
Q Consensus 189 ~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~--------------------~~~~~---------~~-~--~~~~gg~ 236 (328)
-+.. -+.++++.+ .++|+|++.++.-.... |.+.. .. . -....|+
T Consensus 99 i~~~-G~e~f~~~~--~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~ 175 (256)
T TIGR00262 99 IFRK-GVEEFYAKC--KEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGV 175 (256)
T ss_pred Hhhh-hHHHHHHHH--HHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCC
Confidence 1110 134566667 77788777665322110 00000 00 0 0011245
Q ss_pred CCCc--CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 237 SGEP--LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 237 sg~~--~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
+|.. ..+...+.++++++..+ .||+..|||+|++++.+++..|||+|.+||+++.
T Consensus 176 TG~~~~~~~~~~~~i~~lr~~~~--~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 176 TGARNRAASALNELVKRLKAYSA--KPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVK 232 (256)
T ss_pred CCCcccCChhHHHHHHHHHhhcC--CCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 5542 34556889999999876 8999999999999999999999999999999963
No 103
>KOG0134|consensus
Probab=98.86 E-value=3.2e-08 Score=93.32 Aligned_cols=170 Identities=17% Similarity=0.178 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcc-cccEEEEc---------cCCCCCcchhhhhhh-------HHHHHHHHHHHHHHHhhcCCCCCCE
Q psy5880 120 DVVLDSVKGILKFGD-VAHYFVVN---------VSSPNTANLRKLQAK-------DQLKHLLKTVVETRNQLAVKPLPPI 182 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~-~~d~ieiN---------~scPn~~g~~~~~~~-------~~~~~i~~~v~~~~~~~~~~~~~Pv 182 (328)
+.++.|+.+++.+-+ +||+|||| |.+|.+ |.|+++|+ ++..|++++|+++.. .. -+
T Consensus 171 ~V~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~-NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip-----~s-~~ 243 (400)
T KOG0134|consen 171 EVVDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTT-NDRTDEYGGSIENRCRFPLEVVDAVRKEIP-----AS-RV 243 (400)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCC-CCcccccCcchhhhhhhhHHHHHHHHHhhc-----cc-cc
Confidence 345555566666545 79999998 566776 45655543 689999999998842 22 23
Q ss_pred EEEeCC-------CCChhhHHHHHHHhccccCCccEEEEecCCccchh-hhccccccccCCCCCCcCchHHHHHHHHHHH
Q psy5880 183 LVKIAP-------DLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYE-YLDARYKEETGGLSGEPLRNKSTELISEMYK 254 (328)
Q Consensus 183 ~vKl~~-------~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~-~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~ 254 (328)
++.+++ ..+.++...++... +.-|+|.+-+++....... ...++. +-+.-...-+++...++.
T Consensus 244 ~l~~~~~~~fq~~~~t~d~~~~~~~~y--~~~g~df~~l~~g~~~~~~h~i~~R~-------~~~~~~~~~~~f~e~~r~ 314 (400)
T KOG0134|consen 244 FLRGSPTNEFQDIGITIDDAIKMCGLY--EDGGLDFVELTGGTFLAYVHFIEPRQ-------STIAREAFFVEFAETIRP 314 (400)
T ss_pred eEEecCchhhhhccccccchHHHHHHH--HhcccchhhccCchhhhhhhhccccc-------cccccccchhhhhhHHHH
Confidence 444444 24556677888888 8899997766655432110 111111 101111123566777887
Q ss_pred HcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhhcCchHHHHHHHHHH
Q psy5880 255 LTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIKSELE 307 (328)
Q Consensus 255 ~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i~~~l~ 307 (328)
..+ ..-|-+.||..+++.+.++++.| +++|..||.++. +|+++.++..++.
T Consensus 315 ~~k-gt~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~a-nPDLp~rl~~~~~ 366 (400)
T KOG0134|consen 315 VFK-GTVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLA-NPDLPKRLLNGLP 366 (400)
T ss_pred Hhc-CcEEEecCCccCHHHHHHHHhcCCceeEEecchhcc-CCchhHHHHhCCC
Confidence 776 24455777899999999999999 669999999986 5999999987653
No 104
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.85 E-value=4.8e-08 Score=92.33 Aligned_cols=112 Identities=17% Similarity=0.311 Sum_probs=73.1
Q ss_pred ccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 136 AHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 136 ~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.+.+.+.++.|. .++++.+++ .++.++...+. .+-++.+ .++|+|+|++-
T Consensus 114 ~~~v~~~~G~p~-------------~~~i~~l~~--------~gi~v~~~v~s-------~~~A~~a--~~~G~D~iv~q 163 (330)
T PF03060_consen 114 PDVVSFGFGLPP-------------PEVIERLHA--------AGIKVIPQVTS-------VREARKA--AKAGADAIVAQ 163 (330)
T ss_dssp -SEEEEESSSC--------------HHHHHHHHH--------TT-EEEEEESS-------HHHHHHH--HHTT-SEEEEE
T ss_pred eEEEEeecccch-------------HHHHHHHHH--------cCCccccccCC-------HHHHHHh--hhcCCCEEEEe
Confidence 667776666543 233444443 47888988764 3345667 79999999988
Q ss_pred cCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc
Q psy5880 216 NTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH 294 (328)
Q Consensus 216 n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~ 294 (328)
+.- .||+.|.... ....++.++++.++ +|||+.|||.+++++..++.+||++||+||.|+..
T Consensus 164 G~e--------------AGGH~g~~~~-~~~~L~~~v~~~~~--iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t 225 (330)
T PF03060_consen 164 GPE--------------AGGHRGFEVG-STFSLLPQVRDAVD--IPVIAAGGIADGRGIAAALALGADGVQMGTRFLAT 225 (330)
T ss_dssp -TT--------------SSEE---SSG--HHHHHHHHHHH-S--S-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTS
T ss_pred ccc--------------cCCCCCcccc-ceeeHHHHHhhhcC--CcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEec
Confidence 642 3666662111 34577888899887 99999999999999999999999999999999853
No 105
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.84 E-value=1e-07 Score=85.65 Aligned_cols=124 Identities=18% Similarity=0.261 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
..+++++.+.+++ +|+|.++..+| .++++.+++ .++|+++++.+ . +.++
T Consensus 68 ~~~~~~~~~~~~g--~d~v~l~~~~~--------------~~~~~~~~~--------~~i~~i~~v~~------~-~~~~ 116 (236)
T cd04730 68 DFEALLEVALEEG--VPVVSFSFGPP--------------AEVVERLKA--------AGIKVIPTVTS------V-EEAR 116 (236)
T ss_pred CHHHHHHHHHhCC--CCEEEEcCCCC--------------HHHHHHHHH--------cCCEEEEeCCC------H-HHHH
Confidence 4567777777777 99999765421 123333332 36788887643 1 3345
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.|+|+|.+.+... +|..++.. ...++.++++++.++ +||++.|||++++++.++++.
T Consensus 117 ~~--~~~gad~i~~~~~~~--------------~G~~~~~~-~~~~~~i~~i~~~~~--~Pvi~~GGI~~~~~v~~~l~~ 177 (236)
T cd04730 117 KA--EAAGADALVAQGAEA--------------GGHRGTFD-IGTFALVPEVRDAVD--IPVIAAGGIADGRGIAAALAL 177 (236)
T ss_pred HH--HHcCCCEEEEeCcCC--------------CCCCCccc-cCHHHHHHHHHHHhC--CCEEEECCCCCHHHHHHHHHc
Confidence 56 678999998876421 23322211 234678888988876 999999999999999999999
Q ss_pred ccCeeeehhHHhhc
Q psy5880 281 GASLVQIYTSFVYH 294 (328)
Q Consensus 281 GAd~V~vg~a~l~~ 294 (328)
|||+|++||+++..
T Consensus 178 GadgV~vgS~l~~~ 191 (236)
T cd04730 178 GADGVQMGTRFLAT 191 (236)
T ss_pred CCcEEEEchhhhcC
Confidence 99999999999843
No 106
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.83 E-value=7.2e-08 Score=87.72 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=94.4
Q ss_pred ccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHH--HHHhhc-C--CCCCCEEEEeCCCCC--hhhHHHHHHHhccccCC
Q psy5880 136 AHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVE--TRNQLA-V--KPLPPILVKIAPDLS--LDEKKDIADVVLDSKCK 208 (328)
Q Consensus 136 ~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~--~~~~~~-~--~~~~Pv~vKl~~~~~--~~~~~~~a~~l~~~~~G 208 (328)
++.+.++.. ...+|+.+.++.+..-+ .+-.++ + ....|+.||++.... .....++++.+ .+.|
T Consensus 97 a~~Viigt~--------~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~g 166 (253)
T PRK02083 97 ADKVSINSA--------AVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEV--EELG 166 (253)
T ss_pred CCEEEEChh--------HhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHH--HHcC
Confidence 888876533 23355666666555310 000010 0 001467888876432 22456788888 8999
Q ss_pred ccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH-hccCeeee
Q psy5880 209 VDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK-AGASLVQI 287 (328)
Q Consensus 209 ~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~-~GAd~V~v 287 (328)
++.+.+++.... |..+|+ .++.++++++.++ +|||++|||+|.+|+.++++ .||++|++
T Consensus 167 ~~~ii~~~i~~~-------------g~~~g~-----d~~~i~~~~~~~~--ipvia~GGv~s~~d~~~~~~~~G~~gviv 226 (253)
T PRK02083 167 AGEILLTSMDRD-------------GTKNGY-----DLELTRAVSDAVN--VPVIASGGAGNLEHFVEAFTEGGADAALA 226 (253)
T ss_pred CCEEEEcCCcCC-------------CCCCCc-----CHHHHHHHHhhCC--CCEEEECCCCCHHHHHHHHHhCCccEEeE
Confidence 999988753221 223333 3678888888876 99999999999999999997 59999999
Q ss_pred hhHHhhcCchHHHHHHHHHHHHHHHhCCC
Q psy5880 288 YTSFVYHGPPLVTRIKSELEELLQKEGYN 316 (328)
Q Consensus 288 g~a~l~~gp~~~~~i~~~l~~~m~~~g~~ 316 (328)
|+++.. +-.-+. ++.++|.+.|+.
T Consensus 227 g~al~~-~~~~~~----~~~~~~~~~~~~ 250 (253)
T PRK02083 227 ASIFHF-GEITIG----ELKAYLAEQGIP 250 (253)
T ss_pred hHHHHc-CCCCHH----HHHHHHHHCCCc
Confidence 999963 322233 345566677763
No 107
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.83 E-value=3.7e-08 Score=89.72 Aligned_cols=107 Identities=23% Similarity=0.305 Sum_probs=79.4
Q ss_pred EEEeCCCC--ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCc
Q psy5880 183 LVKIAPDL--SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKL 260 (328)
Q Consensus 183 ~vKl~~~~--~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~i 260 (328)
-||++... +..+..++++.+ .++|++.|.+++.... |...|+ .+++++++++.++ +
T Consensus 143 ~v~i~gw~~~~~~~~~~~~~~l--~~~G~~~iivt~i~~~-------------g~~~g~-----~~~~~~~i~~~~~--i 200 (254)
T TIGR00735 143 EVYIYGGRESTGLDAVEWAKEV--EKLGAGEILLTSMDKD-------------GTKSGY-----DLELTKAVSEAVK--I 200 (254)
T ss_pred EEEEeCCcccCCCCHHHHHHHH--HHcCCCEEEEeCcCcc-------------cCCCCC-----CHHHHHHHHHhCC--C
Confidence 35555432 234578899999 9999999999764321 212232 3577888988886 9
Q ss_pred cEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCC
Q psy5880 261 PIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYN 316 (328)
Q Consensus 261 pvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~ 316 (328)
|||++|||++++|+.++++.| |++|++|+++... .+ . ..++.++|+++||.
T Consensus 201 pvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~--~~--~-~~~~~~~~~~~gi~ 252 (254)
T TIGR00735 201 PVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR--EI--T-IGEVKEYLAERGIP 252 (254)
T ss_pred CEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC--CC--C-HHHHHHHHHHCCCc
Confidence 999999999999999999988 9999999999632 22 1 23567788888884
No 108
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.82 E-value=2e-07 Score=92.61 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=99.5
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
++|.+.++.. +. . .....+.++.+++. + .+.||+++- ..+. +-+..+ .++|+|+|.+
T Consensus 240 gvdvivvD~a--~g--~-----~~~vl~~i~~i~~~---~---p~~~vi~g~--v~t~----e~a~~l--~~aGad~i~v 296 (486)
T PRK05567 240 GVDVLVVDTA--HG--H-----SEGVLDRVREIKAK---Y---PDVQIIAGN--VATA----EAARAL--IEAGADAVKV 296 (486)
T ss_pred CCCEEEEECC--CC--c-----chhHHHHHHHHHhh---C---CCCCEEEec--cCCH----HHHHHH--HHcCCCEEEE
Confidence 3787765443 21 1 12344555555554 1 378999842 2332 335667 7999999986
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC-CCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK-GKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~-~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
..+..+ ..+. .. +.|.. ...+..+.++++... .++|||+.|||+++.|+.++|.+|||+|++|++|-.
T Consensus 297 g~g~gs-~~~~-----r~---~~~~g--~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~ 365 (486)
T PRK05567 297 GIGPGS-ICTT-----RI---VAGVG--VPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAG 365 (486)
T ss_pred CCCCCc-cccc-----ee---ecCCC--cCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccccc
Confidence 432211 0000 00 11111 123456666655432 249999999999999999999999999999998720
Q ss_pred ---------------------------------------------------------cCc--hHHHHHHHHHHHHHHHhC
Q psy5880 294 ---------------------------------------------------------HGP--PLVTRIKSELEELLQKEG 314 (328)
Q Consensus 294 ---------------------------------------------------------~gp--~~~~~i~~~l~~~m~~~g 314 (328)
+|+ +++..+..+++.-|.-.|
T Consensus 366 ~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g 445 (486)
T PRK05567 366 TEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTG 445 (486)
T ss_pred cccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCceEEeCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 011 346778888999999999
Q ss_pred CCCHHHHhcc
Q psy5880 315 YNSVSQAVGA 324 (328)
Q Consensus 315 ~~si~e~~G~ 324 (328)
.+||.||+-+
T Consensus 446 ~~~~~~~~~~ 455 (486)
T PRK05567 446 AATIEELREK 455 (486)
T ss_pred cCcHHHHHhc
Confidence 9999999854
No 109
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.82 E-value=2.7e-08 Score=90.65 Aligned_cols=90 Identities=21% Similarity=0.290 Sum_probs=75.9
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+.|++.+++++..... . ..+.+++.++++++.+. +||++.|||+|.+|
T Consensus 31 dp~~~a~~~--~~~G~~~l~v~Dl~~~~--------------~----~~~~n~~~i~~i~~~~~--~pv~~~GGi~s~~d 88 (254)
T TIGR00735 31 DPVELAQRY--DEEGADELVFLDITASS--------------E----GRTTMIDVVERTAETVF--IPLTVGGGIKSIED 88 (254)
T ss_pred CHHHHHHHH--HHcCCCEEEEEcCCccc--------------c----cChhhHHHHHHHHHhcC--CCEEEECCCCCHHH
Confidence 578899999 89999999999865320 0 12346889999999987 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+.+++.+||+.|++||+++ ++|++++++.+..
T Consensus 89 ~~~~~~~Ga~~vivgt~~~-~~p~~~~~~~~~~ 120 (254)
T TIGR00735 89 VDKLLRAGADKVSINTAAV-KNPELIYELADRF 120 (254)
T ss_pred HHHHHHcCCCEEEEChhHh-hChHHHHHHHHHc
Confidence 9999999999999999998 5699998886543
No 110
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.82 E-value=7.2e-08 Score=86.51 Aligned_cols=78 Identities=26% Similarity=0.319 Sum_probs=64.8
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
...++++.+ .+.|++.+.+++.... |.++|+ .++.++++++.++ +|||++|||+|.+|
T Consensus 147 ~~~e~~~~~--~~~g~~~ii~~~~~~~-------------g~~~G~-----d~~~i~~l~~~~~--ipvia~GGi~~~~d 204 (233)
T PRK00748 147 TAEDLAKRF--EDAGVKAIIYTDISRD-------------GTLSGP-----NVEATRELAAAVP--IPVIASGGVSSLDD 204 (233)
T ss_pred CHHHHHHHH--HhcCCCEEEEeeecCc-------------CCcCCC-----CHHHHHHHHHhCC--CCEEEeCCCCCHHH
Confidence 467888999 8999999888865432 334552 3578888988887 99999999999999
Q ss_pred HHHHHHhc-cCeeeehhHHhh
Q psy5880 274 AFEKIKAG-ASLVQIYTSFVY 293 (328)
Q Consensus 274 a~~~l~~G-Ad~V~vg~a~l~ 293 (328)
+.++++.| |++|++||+++.
T Consensus 205 i~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 205 IKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHHHHcCCccEEEEEHHHHc
Confidence 99999988 999999999974
No 111
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.82 E-value=5.8e-08 Score=87.14 Aligned_cols=80 Identities=28% Similarity=0.353 Sum_probs=66.0
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..++++.+ .+.|++.+++++.... |...|+ .++.++++++.++ +||+++|||++.+|
T Consensus 147 ~~~~~~~~~--~~~ga~~iii~~~~~~-------------g~~~g~-----~~~~i~~i~~~~~--ipvi~~GGi~~~~d 204 (234)
T cd04732 147 SLEELAKRF--EELGVKAIIYTDISRD-------------GTLSGP-----NFELYKELAAATG--IPVIASGGVSSLDD 204 (234)
T ss_pred CHHHHHHHH--HHcCCCEEEEEeecCC-------------CccCCC-----CHHHHHHHHHhcC--CCEEEecCCCCHHH
Confidence 467889999 8999999999875432 223442 2578888988887 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCc
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGP 296 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp 296 (328)
+.++++.||+.|++||+++. ++
T Consensus 205 i~~~~~~Ga~gv~vg~~~~~-~~ 226 (234)
T cd04732 205 IKALKELGVAGVIVGKALYE-GK 226 (234)
T ss_pred HHHHHHCCCCEEEEeHHHHc-CC
Confidence 99999999999999999974 44
No 112
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.81 E-value=7.8e-08 Score=86.16 Aligned_cols=79 Identities=28% Similarity=0.387 Sum_probs=64.6
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..++++.+ .+.|++.+++++.... |..+|+ .++.++++++.++ +||+++|||++.+|
T Consensus 146 ~~~~~~~~~--~~~g~~~ii~~~~~~~-------------g~~~g~-----~~~~i~~i~~~~~--ipvia~GGi~~~~d 203 (230)
T TIGR00007 146 SLEELAKRL--EELGLEGIIYTDISRD-------------GTLSGP-----NFELTKELVKAVN--VPVIASGGVSSIDD 203 (230)
T ss_pred CHHHHHHHH--HhCCCCEEEEEeecCC-------------CCcCCC-----CHHHHHHHHHhCC--CCEEEeCCCCCHHH
Confidence 356788989 8999999988865432 223332 3678888888876 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhc
Q psy5880 274 AFEKIKAGASLVQIYTSFVYH 294 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~ 294 (328)
+.+++.+||+.|++||+++..
T Consensus 204 i~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 204 LIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHCCCCEEEEeHHHHcC
Confidence 999999999999999999743
No 113
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.81 E-value=2.7e-07 Score=85.59 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=100.7
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
++|+|.|..+ | | +-+.+.+.++.||+.. ++.+|++ .++- ..+.++.| .++|||++-+
T Consensus 122 g~D~iviD~A--h--G-----hs~~~i~~ik~ik~~~------P~~~vIa---GNV~---T~e~a~~L--i~aGAD~vKV 178 (346)
T PRK05096 122 ALNFICIDVA--N--G-----YSEHFVQFVAKAREAW------PDKTICA---GNVV---TGEMVEEL--ILSGADIVKV 178 (346)
T ss_pred CCCEEEEECC--C--C-----cHHHHHHHHHHHHHhC------CCCcEEE---eccc---CHHHHHHH--HHcCCCEEEE
Confidence 5899998777 3 2 2245667777777652 4566654 3332 24567778 8999999865
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHH---HHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEM---YKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i---~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
.=...+ ..+ ++ ..-|. |. | .+..+..+ ++..+ +|||+-|||++.-|+.++|.+|||+||+|+.|
T Consensus 179 GIGpGS-iCt--Tr---~vtGv-G~---P-QltAV~~~a~~a~~~g--vpiIADGGi~~sGDI~KAlaaGAd~VMlGsll 245 (346)
T PRK05096 179 GIGPGS-VCT--TR---VKTGV-GY---P-QLSAVIECADAAHGLG--GQIVSDGGCTVPGDVAKAFGGGADFVMLGGML 245 (346)
T ss_pred cccCCc-ccc--Cc---ccccc-Ch---h-HHHHHHHHHHHHHHcC--CCEEecCCcccccHHHHHHHcCCCEEEeChhh
Confidence 311100 000 00 01111 11 1 23444443 33344 89999999999999999999999999999976
Q ss_pred h--------------------------------------------------hcCc--hHHHHHHHHHHHHHHHhCCCCHH
Q psy5880 292 V--------------------------------------------------YHGP--PLVTRIKSELEELLQKEGYNSVS 319 (328)
Q Consensus 292 l--------------------------------------------------~~gp--~~~~~i~~~l~~~m~~~g~~si~ 319 (328)
- ++|| +++.++..+|+.-|.-.|.++|.
T Consensus 246 AGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~ 325 (346)
T PRK05096 246 AGHEESGGEIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLK 325 (346)
T ss_pred cCcccCCCcEEEECCEEEEEEeccccHHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHH
Confidence 2 1112 35788888999999999999999
Q ss_pred HHhccc
Q psy5880 320 QAVGAA 325 (328)
Q Consensus 320 e~~G~~ 325 (328)
||+-++
T Consensus 326 el~~~a 331 (346)
T PRK05096 326 ELTKRT 331 (346)
T ss_pred HHHhCC
Confidence 997543
No 114
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.78 E-value=3.6e-08 Score=89.69 Aligned_cols=90 Identities=21% Similarity=0.309 Sum_probs=76.1
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+.|++.+++++..... .. .+..++.++++++.++ +||++.|||+|.+|
T Consensus 31 d~~~~a~~~--~~~G~~~i~i~dl~~~~-------------~~-----~~~~~~~i~~i~~~~~--ipv~~~GGi~s~~~ 88 (253)
T PRK02083 31 DPVELAKRY--NEEGADELVFLDITASS-------------EG-----RDTMLDVVERVAEQVF--IPLTVGGGIRSVED 88 (253)
T ss_pred CHHHHHHHH--HHcCCCEEEEEeCCccc-------------cc-----CcchHHHHHHHHHhCC--CCEEeeCCCCCHHH
Confidence 578899999 89999999999876420 01 1346889999999887 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+.+++..||+.|++||+++. +|+++.++.+..
T Consensus 89 ~~~~l~~Ga~~Viigt~~l~-~p~~~~ei~~~~ 120 (253)
T PRK02083 89 ARRLLRAGADKVSINSAAVA-NPELISEAADRF 120 (253)
T ss_pred HHHHHHcCCCEEEEChhHhh-CcHHHHHHHHHc
Confidence 99999999999999999985 699998886653
No 115
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.77 E-value=8.6e-08 Score=86.72 Aligned_cols=62 Identities=29% Similarity=0.372 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCCccEE--EecCCCCHHHHHHHHHhccCeeeehhHHhh-cCchH-HHHHHHHHH
Q psy5880 244 KSTELISEMYKLTKGKLPII--GVGGVFSGKDAFEKIKAGASLVQIYTSFVY-HGPPL-VTRIKSELE 307 (328)
Q Consensus 244 ~~l~~v~~i~~~~~~~ipvi--a~GGI~s~~da~~~l~~GAd~V~vg~a~l~-~gp~~-~~~i~~~l~ 307 (328)
..++.++++++..+ +||+ +.|||.|++++..++++||+.|.|||+++. .+|.. .+++.+.+.
T Consensus 184 ~~~elLkei~~~~~--iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~ 249 (287)
T TIGR00343 184 VPVELLLEVLKLGK--LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATT 249 (287)
T ss_pred CCHHHHHHHHHhCC--CCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHH
Confidence 34688899988776 9998 999999999999999999999999999973 23432 334444333
No 116
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.76 E-value=4.7e-07 Score=89.31 Aligned_cols=165 Identities=18% Similarity=0.162 Sum_probs=106.7
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEE-EeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILV-KIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~v-Kl~~~~~~~~~~~~a~~ 201 (328)
.+.++..... ++|.|.+..+ +. +...+.+.++.||+.. .+.+|++ -+.. .+-++.
T Consensus 229 ~~~a~~Lv~a--Gvd~i~~D~a--~~-------~~~~~~~~i~~ik~~~------p~~~v~agnv~t-------~~~a~~ 284 (479)
T PRK07807 229 AAKARALLEA--GVDVLVVDTA--HG-------HQEKMLEALRAVRALD------PGVPIVAGNVVT-------AEGTRD 284 (479)
T ss_pred HHHHHHHHHh--CCCEEEEecc--CC-------ccHHHHHHHHHHHHHC------CCCeEEeeccCC-------HHHHHH
Confidence 3444444443 4888887666 21 1345778888888762 4678876 4332 345677
Q ss_pred hccccCCccEEEEe-cCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC-CCccEEEecCCCCHHHHHHHHH
Q psy5880 202 VLDSKCKVDGLIVS-NTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK-GKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 202 l~~~~~G~d~i~~~-n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~-~~ipvia~GGI~s~~da~~~l~ 279 (328)
| .++|+|+|-+. ++..-.+ ..++.|-. ...+..+.++++... .++|||+-|||+++.|+.++|.
T Consensus 285 l--~~aGad~v~vgig~gsict----------t~~~~~~~--~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~ 350 (479)
T PRK07807 285 L--VEAGADIVKVGVGPGAMCT----------TRMMTGVG--RPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALA 350 (479)
T ss_pred H--HHcCCCEEEECccCCcccc----------cccccCCc--hhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHH
Confidence 7 89999999642 2210000 01122211 124566666665321 1499999999999999999999
Q ss_pred hccCeeeehhHHhh-------------------------------------------------------------cCc--
Q psy5880 280 AGASLVQIYTSFVY-------------------------------------------------------------HGP-- 296 (328)
Q Consensus 280 ~GAd~V~vg~a~l~-------------------------------------------------------------~gp-- 296 (328)
+||++||+|+.|.- +||
T Consensus 351 ~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~eGv~~~~~~~~~~~g~~~ 430 (479)
T PRK07807 351 AGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFEEGISTSRMYLDPGRPGVE 430 (479)
T ss_pred cCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCCCCccceeeeccCCCCCHH
Confidence 99999999997730 000
Q ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 297 PLVTRIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 297 ~~~~~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
..+..+..+|+.-|.-.|.+||.||+-++
T Consensus 431 ~~~~~l~~glr~~~~y~g~~~i~~~~~~~ 459 (479)
T PRK07807 431 DLLDHITSGVRSSCTYAGARTLAEFHERA 459 (479)
T ss_pred HHHHHHHHHHHHHHhhcCcCcHHHHHhCC
Confidence 24567777888888999999999987654
No 117
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.75 E-value=2e-07 Score=91.68 Aligned_cols=124 Identities=18% Similarity=0.215 Sum_probs=78.6
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
++|.|+++.+..++ ....+.++.+++.. .+.||+++-- .+ .+-++.+ .++|+|+|.+
T Consensus 236 G~d~I~vd~a~g~~---------~~~~~~i~~i~~~~------~~~~vi~G~v--~t----~~~a~~l--~~aGad~i~v 292 (450)
T TIGR01302 236 GVDVIVIDSSHGHS---------IYVIDSIKEIKKTY------PDLDIIAGNV--AT----AEQAKAL--IDAGADGLRV 292 (450)
T ss_pred CCCEEEEECCCCcH---------hHHHHHHHHHHHhC------CCCCEEEEeC--CC----HHHHHHH--HHhCCCEEEE
Confidence 49999998874322 24566677776642 4789999532 23 2346667 8999999977
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC-CCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK-GKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~-~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
+.+..+ .... ....|. |. ..+..+.++++... .++|||+.|||+++.|+.++|.+||++||+|+.|.
T Consensus 293 g~g~G~-~~~t-----~~~~~~-g~----p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a 360 (450)
T TIGR01302 293 GIGPGS-ICTT-----RIVAGV-GV----PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLA 360 (450)
T ss_pred CCCCCc-CCcc-----ceecCC-Cc----cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 532111 0000 000011 11 12344444443321 23999999999999999999999999999999884
No 118
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.74 E-value=2.9e-07 Score=85.65 Aligned_cols=151 Identities=15% Similarity=0.072 Sum_probs=90.8
Q ss_pred hHHHHHHHhhcC----ccceEEeccCCCCCcCccCCC-chHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccc
Q psy5880 43 QFWLLGILKFGD----VAHYFVVNVSSPNTANLRKLQ-AKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKD 117 (328)
Q Consensus 43 ~~y~~~~~~l~~----~~~~v~~n~sspN~~gl~~~~-~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~ 117 (328)
++|.+.++++.. .+|++++|+||||+.|...++ +++.+.++++++++.. .+|+++|++|+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-------~iPv~vKl~p~~~------ 169 (294)
T cd04741 103 EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-------SIPVGVKTPPYTD------ 169 (294)
T ss_pred HHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-------CCCEEEEeCCCCC------
Confidence 366666676654 489999999999998877666 6888999999998774 3799999999753
Q ss_pred hhHHHHHHHHHHHHhcccccEEEE-ccCCC----C--Ccc--h--hh----hhhhHHHHHHHHHHHHHHHhhcCCCCCCE
Q psy5880 118 IADVVLDSVKGILKFGDVAHYFVV-NVSSP----N--TAN--L--RK----LQAKDQLKHLLKTVVETRNQLAVKPLPPI 182 (328)
Q Consensus 118 ~~~~i~~~~~~a~~~~~~~d~iei-N~scP----n--~~g--~--~~----~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv 182 (328)
...+.++++.+...+.++|+|.+ |...+ + +.. . .. ...+......++.|++.++.++ .++||
T Consensus 170 -~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~--~~ipI 246 (294)
T cd04741 170 -PAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLP--SEIQI 246 (294)
T ss_pred -HHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcC--CCCCE
Confidence 23456666666555223787764 43211 1 000 0 00 0011112223444444443331 25787
Q ss_pred EEEeCCCCChhhHHHHHHHhccccCCccEEEEec
Q psy5880 183 LVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 183 ~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
+.= ..-.+ ..++.+.+ . +|||++-+..
T Consensus 247 ig~-GGI~s---~~da~e~l--~-aGA~~Vqv~t 273 (294)
T cd04741 247 IGV-GGVLD---GRGAFRMR--L-AGASAVQVGT 273 (294)
T ss_pred EEe-CCCCC---HHHHHHHH--H-cCCCceeEch
Confidence 643 22233 44566666 4 8999997654
No 119
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.74 E-value=4.1e-07 Score=85.73 Aligned_cols=165 Identities=17% Similarity=0.262 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.+.++.+..++ +|+|.|..+ |. +-+.+.+.++.+|+.. .++||++== -.+ .+.++.|
T Consensus 110 ~er~~~L~~ag--vD~ivID~a--~g-------~s~~~~~~ik~ik~~~------~~~~viaGN--V~T----~e~a~~L 166 (352)
T PF00478_consen 110 FERAEALVEAG--VDVIVIDSA--HG-------HSEHVIDMIKKIKKKF------PDVPVIAGN--VVT----YEGAKDL 166 (352)
T ss_dssp HHHHHHHHHTT---SEEEEE-S--ST-------TSHHHHHHHHHHHHHS------TTSEEEEEE--E-S----HHHHHHH
T ss_pred HHHHHHHHHcC--CCEEEcccc--Cc-------cHHHHHHHHHHHHHhC------CCceEEecc--cCC----HHHHHHH
Confidence 33344444455 999998766 31 1234556666776652 457887531 122 3556778
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHH---HHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELIS---EMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~---~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
.++|+|+|-+.=...+ ..+.+ ..-|. |- | .+..+. +.++... +|||+-|||++.-|+.++|.
T Consensus 167 --~~aGad~vkVGiGpGs-iCtTr-----~v~Gv-G~---P-Q~tAv~~~a~~a~~~~--v~iIADGGi~~sGDi~KAla 231 (352)
T PF00478_consen 167 --IDAGADAVKVGIGPGS-ICTTR-----EVTGV-GV---P-QLTAVYECAEAARDYG--VPIIADGGIRTSGDIVKALA 231 (352)
T ss_dssp --HHTT-SEEEESSSSST-TBHHH-----HHHSB-SC---T-HHHHHHHHHHHHHCTT--SEEEEESS-SSHHHHHHHHH
T ss_pred --HHcCCCEEEEeccCCc-ccccc-----ccccc-CC---c-HHHHHHHHHHHhhhcc--CceeecCCcCcccceeeeee
Confidence 8999999977421111 00000 00111 11 2 233344 4444444 99999999999999999999
Q ss_pred hccCeeeehhHHh---------------------------------------------------------hcCc--hHHH
Q psy5880 280 AGASLVQIYTSFV---------------------------------------------------------YHGP--PLVT 300 (328)
Q Consensus 280 ~GAd~V~vg~a~l---------------------------------------------------------~~gp--~~~~ 300 (328)
+|||+||+|+.|- ++|+ +++.
T Consensus 232 ~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~ 311 (352)
T PF00478_consen 232 AGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILP 311 (352)
T ss_dssp TT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHH
T ss_pred ecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccchhccccccccccccceeecCCCCCCHHHHHH
Confidence 9999999998652 0011 2467
Q ss_pred HHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 301 RIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 301 ~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
.+..+|+.-|.-.|..||.||+.++
T Consensus 312 ~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 312 QLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp HHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHhCC
Confidence 8888899999999999999998754
No 120
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.73 E-value=6.2e-08 Score=91.38 Aligned_cols=101 Identities=21% Similarity=0.344 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCC-
Q psy5880 161 KHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGE- 239 (328)
Q Consensus 161 ~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~- 239 (328)
.++++.++. .+..++.++.. ...++.+ +++|+|+|++.+.. .||+.|.
T Consensus 117 ~~~i~~~~~--------~g~~v~~~v~~-------~~~A~~~--~~~G~d~vI~~g~e--------------AGGH~g~~ 165 (336)
T COG2070 117 AEFVARLKA--------AGIKVIHSVIT-------VREALKA--ERAGADAVIAQGAE--------------AGGHRGGV 165 (336)
T ss_pred HHHHHHHHH--------cCCeEEEEeCC-------HHHHHHH--HhCCCCEEEecCCc--------------CCCcCCCC
Confidence 445555554 36678877754 3456777 89999999887642 3666663
Q ss_pred cCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 240 PLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 240 ~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
...+.....+.++++.++. +|||+.|||.+++++..+++.||++||+||.|+.
T Consensus 166 ~~~~~t~~Lv~ev~~~~~~-iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~ 218 (336)
T COG2070 166 DLEVSTFALVPEVVDAVDG-IPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 218 (336)
T ss_pred CCCccHHHHHHHHHHHhcC-CCEEEecCccChHHHHHHHHhccHHHHhhhhhhc
Confidence 2223446788899998864 8999999999999999999999999999999984
No 121
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.73 E-value=3.4e-07 Score=82.84 Aligned_cols=131 Identities=18% Similarity=0.143 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecC--Cccchhh---hcc---cccc
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNT--TVDRYEY---LDA---RYKE 231 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~--~~~~~~~---~~~---~~~~ 231 (328)
+.+++..+|+. .+.|++.-++. +.+..+ . .+.|+|.|-.+.. +....+. .+. ...
T Consensus 100 ~~~~~~~iK~~-------~~~l~MAD~st------leEal~-a--~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~- 162 (283)
T cd04727 100 ADEEHHIDKHK-------FKVPFVCGARN------LGEALR-R--ISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIR- 162 (283)
T ss_pred HHHHHHHHHHH-------cCCcEEccCCC------HHHHHH-H--HHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHH-
Confidence 46677777765 57899988764 344333 4 6899999854321 1110000 000 000
Q ss_pred ccCCCCCCc------CchHHHHHHHHHHHHcCCCccEE--EecCCCCHHHHHHHHHhccCeeeehhHHhh-cCch-HHHH
Q psy5880 232 ETGGLSGEP------LRNKSTELISEMYKLTKGKLPII--GVGGVFSGKDAFEKIKAGASLVQIYTSFVY-HGPP-LVTR 301 (328)
Q Consensus 232 ~~gg~sg~~------~~~~~l~~v~~i~~~~~~~ipvi--a~GGI~s~~da~~~l~~GAd~V~vg~a~l~-~gp~-~~~~ 301 (328)
...||.... ..+..+++++++++.++ +||+ +.|||+|++++.+++++||++|.||++++. .+|. ..++
T Consensus 163 ~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~--iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~ 240 (283)
T cd04727 163 KLQSMSEEELYAVAKEIQAPYELVKETAKLGR--LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARA 240 (283)
T ss_pred HHhCCCHHHHHhhhcccCCCHHHHHHHHHhcC--CCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHH
Confidence 001121110 11235688999999876 9997 999999999999999999999999999973 2343 3455
Q ss_pred HHHHHHHH
Q psy5880 302 IKSELEEL 309 (328)
Q Consensus 302 i~~~l~~~ 309 (328)
+...+..|
T Consensus 241 f~~ai~~~ 248 (283)
T cd04727 241 IVEAVTHY 248 (283)
T ss_pred HHHHHHhc
Confidence 54444443
No 122
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.70 E-value=7.8e-07 Score=80.41 Aligned_cols=158 Identities=23% Similarity=0.308 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhcccccEEEEcc--CCCCCcch-------hhhhhh---HHHHHHHHHHHHHHHhhcCCCCCCEEE--E
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNV--SSPNTANL-------RKLQAK---DQLKHLLKTVVETRNQLAVKPLPPILV--K 185 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~--scPn~~g~-------~~~~~~---~~~~~i~~~v~~~~~~~~~~~~~Pv~v--K 185 (328)
+.+.++++..+.++ +|++|+++ |-|..+|. +.++++ +...++++.+|+. .++|+.+ +
T Consensus 14 ~~~~~~~~~l~~~G--ad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~-------~~~pv~lm~y 84 (242)
T cd04724 14 ETTLEILKALVEAG--ADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK-------NTIPIVLMGY 84 (242)
T ss_pred HHHHHHHHHHHHCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-------CCCCEEEEEe
Confidence 56677777777766 99999994 44554332 112222 3556666666554 4678655 7
Q ss_pred eCCCCChhhHHHHHHHhccccCCccEEEEecCCccc--------------------hhh--------hc--ccc---ccc
Q psy5880 186 IAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDR--------------------YEY--------LD--ARY---KEE 232 (328)
Q Consensus 186 l~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~--------------------~~~--------~~--~~~---~~~ 232 (328)
+.+.+.. -+..+++.+ .++|++++++..-.... |.+ .. ... -..
T Consensus 85 ~n~~~~~-G~~~fi~~~--~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~ 161 (242)
T cd04724 85 YNPILQY-GLERFLRDA--KEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSR 161 (242)
T ss_pred cCHHHHh-CHHHHHHHH--HHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeC
Confidence 6653321 134566777 77888887762110000 000 00 000 001
Q ss_pred cCCCCCCc-CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 233 TGGLSGEP-LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 233 ~gg~sg~~-~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
.|+..+.. ..+...+.++++++..+ +||..-|||++++++.++..+ ||+|.+||+++
T Consensus 162 ~g~tG~~~~~~~~~~~~i~~lr~~~~--~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 162 TGVTGARTELPDDLKELIKRIRKYTD--LPIAVGFGISTPEQAAEVAKY-ADGVIVGSALV 219 (242)
T ss_pred CCCCCCccCCChhHHHHHHHHHhcCC--CcEEEEccCCCHHHHHHHHcc-CCEEEECHHHH
Confidence 12222221 23445688999998765 999999999999999999999 99999999996
No 123
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.70 E-value=3.4e-07 Score=81.36 Aligned_cols=149 Identities=16% Similarity=0.088 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..+.++++.+...+ +++|-++.. +.. .... .+.++.|++. .++||.+|- ...+. ..+
T Consensus 31 ~~~~~~A~~~~~~G--A~~l~v~~~-~~~----~~g~----~~~~~~i~~~-------v~iPi~~~~-~i~~~----~~v 87 (217)
T cd00331 31 FDPVEIAKAYEKAG--AAAISVLTE-PKY----FQGS----LEDLRAVREA-------VSLPVLRKD-FIIDP----YQI 87 (217)
T ss_pred CCHHHHHHHHHHcC--CCEEEEEeC-ccc----cCCC----HHHHHHHHHh-------cCCCEEECC-eecCH----HHH
Confidence 46788888888877 999965433 111 1111 2455566665 578999872 21221 246
Q ss_pred HHhccccCCccEEEEecCCccch-----------hhhc------c--------ccccccCCCCCC--cCchHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRY-----------EYLD------A--------RYKEETGGLSGE--PLRNKSTELISEM 252 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~-----------~~~~------~--------~~~~~~gg~sg~--~~~~~~l~~v~~i 252 (328)
+.+ .++|+|++++..+..... .+.. . ......-++.+. ...+..++.+.++
T Consensus 88 ~~~--~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l 165 (217)
T cd00331 88 YEA--RAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRDLKTFEVDLNTTERL 165 (217)
T ss_pred HHH--HHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCccccCcCHHHHHHH
Confidence 777 899999998766543210 0000 0 000000011111 0112335777888
Q ss_pred HHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 253 YKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 253 ~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
++.++.++|+++.|||++++|+.+++.+||++|.+||+++.
T Consensus 166 ~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 166 APLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred HHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 88763359999999999999999999999999999999973
No 124
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.70 E-value=2.6e-06 Score=77.56 Aligned_cols=162 Identities=21% Similarity=0.282 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhcccccEEEEc--cCCCCCcch-------hhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC-
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVN--VSSPNTANL-------RKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD- 189 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN--~scPn~~g~-------~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~- 189 (328)
+...+++....+.+ +|.|||- ||-|..+|- +.+.++-.+.++++.+++.+.. ..++|+++-.=.+
T Consensus 26 ~~~~~~~~~l~~~G--ad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~---~~~~p~vlm~Y~N~ 100 (258)
T PRK13111 26 ETSLEIIKALVEAG--ADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREK---DPTIPIVLMTYYNP 100 (258)
T ss_pred HHHHHHHHHHHHCC--CCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCCEEEEecccH
Confidence 34445555554444 9999987 455665431 2233443455666666665421 1578976432111
Q ss_pred -CChhhHHHHHHHhccccCCccEEEEecCCccc--------------------hhh----------hccccc--cccCCC
Q psy5880 190 -LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDR--------------------YEY----------LDARYK--EETGGL 236 (328)
Q Consensus 190 -~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~--------------------~~~----------~~~~~~--~~~gg~ 236 (328)
+. --..++++.+ .++|+||+.+..=.... |.+ ..+..- ...-|.
T Consensus 101 i~~-~G~e~f~~~~--~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~Gv 177 (258)
T PRK13111 101 IFQ-YGVERFAADA--AEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGV 177 (258)
T ss_pred Hhh-cCHHHHHHHH--HHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 10 0134566666 66777776553211100 000 000000 011223
Q ss_pred CCC--cCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 237 SGE--PLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 237 sg~--~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
+|. ...+...+.++++++..+ +||+..+||++++++.+++.. ||+|.|||+++
T Consensus 178 TG~~~~~~~~~~~~i~~vk~~~~--~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv 232 (258)
T PRK13111 178 TGARSADAADLAELVARLKAHTD--LPVAVGFGISTPEQAAAIAAV-ADGVIVGSALV 232 (258)
T ss_pred CCcccCCCccHHHHHHHHHhcCC--CcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHH
Confidence 333 122234568999999776 999999999999999999875 99999999997
No 125
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.69 E-value=3.3e-07 Score=85.43 Aligned_cols=144 Identities=15% Similarity=0.145 Sum_probs=91.1
Q ss_pred hHHHHHHHhhcC-ccceEEeccCCCCCcCccCC-----CchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCccccccc
Q psy5880 43 QFWLLGILKFGD-VAHYFVVNVSSPNTANLRKL-----QAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKK 116 (328)
Q Consensus 43 ~~y~~~~~~l~~-~~~~v~~n~sspN~~gl~~~-----~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~ 116 (328)
++|.+.++++.. .+|++++|+||||+.+.+.. ++++.+.++++.+++.. ..|+++|++|+.+
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-------~~Pv~vKl~~~~~----- 180 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-------KIPVIAKLTPNIT----- 180 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-------CCCeEEECCCCch-----
Confidence 478888887754 48999999999998654433 57888999999988763 3799999998642
Q ss_pred chhHHHHHHHHHHHHhcccccEEEE-ccCCC------CC-----------c-chhhh-hhhHHHHHHHHHHHHHHHhhcC
Q psy5880 117 DIADVVLDSVKGILKFGDVAHYFVV-NVSSP------NT-----------A-NLRKL-QAKDQLKHLLKTVVETRNQLAV 176 (328)
Q Consensus 117 ~~~~~i~~~~~~a~~~~~~~d~iei-N~scP------n~-----------~-g~~~~-~~~~~~~~i~~~v~~~~~~~~~ 176 (328)
.+.++++.+.+++ +|+|.+ |..-. .+ . +..+. .......+.+..+++. +.
T Consensus 181 ----~~~~~a~~~~~~G--adgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~---~~- 250 (299)
T cd02940 181 ----DIREIARAAKEGG--ADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARA---PE- 250 (299)
T ss_pred ----hHHHHHHHHHHcC--CCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHh---cC-
Confidence 5778888888777 888874 31100 00 0 00000 0112234555555554 21
Q ss_pred CCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEec
Q psy5880 177 KPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 177 ~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
.++||+. ..++.. ..++.+.+ .+|||++.+..
T Consensus 251 -~~ipIig--~GGI~~--~~da~~~l---~aGA~~V~i~t 282 (299)
T cd02940 251 -PGLPISG--IGGIES--WEDAAEFL---LLGASVVQVCT 282 (299)
T ss_pred -CCCcEEE--ECCCCC--HHHHHHHH---HcCCChheEce
Confidence 2688876 233332 44566666 49999996653
No 126
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.69 E-value=1.1e-07 Score=90.41 Aligned_cols=126 Identities=19% Similarity=0.261 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCC
Q psy5880 156 AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG 235 (328)
Q Consensus 156 ~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg 235 (328)
+++.+.+++++|++. .+.+|++... ....++++.+ .++|+|.|++++|+...- +
T Consensus 117 ~p~l~~~ii~~vr~a----------~VtvkiRl~~--~~~~e~a~~l--~eAGad~I~ihgrt~~q~----------~-- 170 (369)
T TIGR01304 117 KPELLGERIAEVRDS----------GVITAVRVSP--QNAREIAPIV--VKAGADLLVIQGTLVSAE----------H-- 170 (369)
T ss_pred ChHHHHHHHHHHHhc----------ceEEEEecCC--cCHHHHHHHH--HHCCCCEEEEeccchhhh----------c--
Confidence 456788888888864 2667776532 2467899999 999999999999885410 0
Q ss_pred CCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh-----hc---Cc--hHHHHHHHH
Q psy5880 236 LSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV-----YH---GP--PLVTRIKSE 305 (328)
Q Consensus 236 ~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l-----~~---gp--~~~~~i~~~ 305 (328)
.+|... | ..+.++.+..+ +|||+ |+|.|.+++.+++++|||+|++|++-- .. -| ..+.++...
T Consensus 171 ~sg~~~-p---~~l~~~i~~~~--IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a 243 (369)
T TIGR01304 171 VSTSGE-P---LNLKEFIGELD--VPVIA-GGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAA 243 (369)
T ss_pred cCCCCC-H---HHHHHHHHHCC--CCEEE-eCCCCHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHH
Confidence 122222 1 23555566666 99997 999999999999999999999885321 01 12 134455555
Q ss_pred HHHHHHHhC
Q psy5880 306 LEELLQKEG 314 (328)
Q Consensus 306 l~~~m~~~g 314 (328)
.++|+++.|
T Consensus 244 ~~~~~~e~g 252 (369)
T TIGR01304 244 RRDYLDETG 252 (369)
T ss_pred HHHHHHhcC
Confidence 566776665
No 127
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.67 E-value=5.4e-06 Score=74.89 Aligned_cols=164 Identities=22% Similarity=0.248 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHhcccccEEEEc--cCCCCCcc-------hhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVN--VSSPNTAN-------LRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD 189 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN--~scPn~~g-------~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~ 189 (328)
.+...++++.+.+.+ +|+||+- ||-|-.+| .|-+..+-.+.++++.+++.++. +.++|+++=.=.+
T Consensus 30 ~e~s~e~i~~L~~~G--aD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~---~~~~Pivlm~Y~N 104 (265)
T COG0159 30 LETSLEIIKTLVEAG--ADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAK---GVKVPIVLMTYYN 104 (265)
T ss_pred HHHHHHHHHHHHhCC--CCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc---CCCCCEEEEEecc
Confidence 345556666666555 9999976 45555433 12222222334444444444321 2678987653221
Q ss_pred C-ChhhHHHHHHHhccccCCccEEEEecCCccc--------------------h---hhhccc-------c--ccccCCC
Q psy5880 190 L-SLDEKKDIADVVLDSKCKVDGLIVSNTTVDR--------------------Y---EYLDAR-------Y--KEETGGL 236 (328)
Q Consensus 190 ~-~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~--------------------~---~~~~~~-------~--~~~~gg~ 236 (328)
. -.-.+..+.+.+ .++|+|++.+..-.... | +.+... . ....-|.
T Consensus 105 pi~~~Gie~F~~~~--~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~Gv 182 (265)
T COG0159 105 PIFNYGIEKFLRRA--KEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGV 182 (265)
T ss_pred HHHHhhHHHHHHHH--HHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccc
Confidence 1 001234455556 56666666543211110 0 000000 0 0112244
Q ss_pred CCCcCc--hHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 237 SGEPLR--NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 237 sg~~~~--~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
.|.... ...-+.++++|+..+ +||...=||++++++.++.+. ||+|.|||+++
T Consensus 183 TG~~~~~~~~~~~~v~~vr~~~~--~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV 237 (265)
T COG0159 183 TGARNPVSADVKELVKRVRKYTD--VPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIV 237 (265)
T ss_pred cCCCcccchhHHHHHHHHHHhcC--CCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHH
Confidence 454322 124578889998876 999999999999999999999 99999999996
No 128
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.63 E-value=1.5e-07 Score=84.39 Aligned_cols=90 Identities=27% Similarity=0.278 Sum_probs=74.2
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..++++.+ .+.|+|.++++..... +.+ .+..+++++++++.++ +|+++.|||+++++
T Consensus 30 dp~~~a~~~--~~~g~d~l~v~dl~~~---------------~~~---~~~~~~~i~~i~~~~~--~pv~~~GgI~~~e~ 87 (234)
T cd04732 30 DPVEVAKKW--EEAGAKWLHVVDLDGA---------------KGG---EPVNLELIEEIVKAVG--IPVQVGGGIRSLED 87 (234)
T ss_pred CHHHHHHHH--HHcCCCEEEEECCCcc---------------ccC---CCCCHHHHHHHHHhcC--CCEEEeCCcCCHHH
Confidence 578899999 8999999999854321 111 1234688899999886 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+.+++.+|||.|++|++.+ .+|+++.++.+..
T Consensus 88 ~~~~~~~Gad~vvigs~~l-~dp~~~~~i~~~~ 119 (234)
T cd04732 88 IERLLDLGVSRVIIGTAAV-KNPELVKELLKEY 119 (234)
T ss_pred HHHHHHcCCCEEEECchHH-hChHHHHHHHHHc
Confidence 9999999999999999998 4699988887653
No 129
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=98.62 E-value=1e-06 Score=78.73 Aligned_cols=134 Identities=19% Similarity=0.138 Sum_probs=93.1
Q ss_pred hHHHHHHHhhcCccceEEeccCCCCC------cCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCccccccc
Q psy5880 43 QFWLLGILKFGDVAHYFVVNVSSPNT------ANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKK 116 (328)
Q Consensus 43 ~~y~~~~~~l~~~~~~v~~n~sspN~------~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~ 116 (328)
++|.++++.+..++|++++|.+||+. .|..-+++++.+.++++.+++. ..|+.+|+.++.+
T Consensus 80 ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--------~~PVsvKiR~~~~----- 146 (231)
T TIGR00736 80 EEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--------NKPIFVKIRGNCI----- 146 (231)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--------CCcEEEEeCCCCC-----
Confidence 57888888888899999999999994 4666677899999999998833 3699999998642
Q ss_pred chhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCC-CCCEEEEeCCCCChhhH
Q psy5880 117 DIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKP-LPPILVKIAPDLSLDEK 195 (328)
Q Consensus 117 ~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~-~~Pv~vKl~~~~~~~~~ 195 (328)
.....++++.++.++ +|+|.++..-| +. +..-.+.+..+++. . ++||+. ..++. ..
T Consensus 147 --~~~~~~~a~~l~~aG--ad~i~Vd~~~~---g~-----~~a~~~~I~~i~~~-------~~~ipIIg--NGgI~--s~ 203 (231)
T TIGR00736 147 --PLDELIDALNLVDDG--FDGIHVDAMYP---GK-----PYADMDLLKILSEE-------FNDKIIIG--NNSID--DI 203 (231)
T ss_pred --cchHHHHHHHHHHcC--CCEEEEeeCCC---CC-----chhhHHHHHHHHHh-------cCCCcEEE--ECCcC--CH
Confidence 234568888888877 99998863222 11 11234555555554 4 488765 23322 24
Q ss_pred HHHHHHhccccCCccEEEEe
Q psy5880 196 KDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~ 215 (328)
.+..+.+ . .|+|+|.+.
T Consensus 204 eda~e~l--~-~GAd~Vmvg 220 (231)
T TIGR00736 204 ESAKEML--K-AGADFVSVA 220 (231)
T ss_pred HHHHHHH--H-hCCCeEEEc
Confidence 4555556 4 899999665
No 130
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=98.62 E-value=2.8e-07 Score=85.72 Aligned_cols=166 Identities=18% Similarity=0.134 Sum_probs=93.0
Q ss_pred cccccCCCCcCChhhHHHHHHHhHHHHHHHhhcCccceEEeccCCCCCcCccCCCchHH-HHHHHHHHHHHhhhhcCCCC
Q psy5880 21 EWGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQ-LKHLLKTVVETRNQLALKPL 99 (328)
Q Consensus 21 ~~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~-L~~ll~~v~~~~~~~~~~~~ 99 (328)
.+++.++.+..+ +...++|.+.++++...+|++|+|+||||+.+.+..++.+. ...+++.+++.. .
T Consensus 96 ~~pvi~Si~~~~------~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~-------~ 162 (295)
T PF01180_consen 96 DIPVIASINGDS------EEEIEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAV-------D 162 (295)
T ss_dssp CEEEEEEE-TSS------SGHHHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHH-------S
T ss_pred ceeEEEEeecCC------chhHHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhcc-------C
Confidence 467777766665 22335899999988888999999999999998776664444 556666666554 4
Q ss_pred CcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEE-EccC--C----CCCc----chhh--hhhhHHHHHHHHH
Q psy5880 100 PPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFV-VNVS--S----PNTA----NLRK--LQAKDQLKHLLKT 166 (328)
Q Consensus 100 ~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ie-iN~s--c----Pn~~----g~~~--~~~~~~~~~i~~~ 166 (328)
.|+++|++|+++. ......+..+... ++++|. +|.. . +++. +... +..+....-.++.
T Consensus 163 ~Pv~vKL~p~~~~-------~~~~~~~~~~~~~--g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~ 233 (295)
T PF01180_consen 163 IPVFVKLSPNFTD-------IEPFAIAAELAAD--GADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRW 233 (295)
T ss_dssp SEEEEEE-STSSC-------HHHHHHHHHHHTH--TECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHH
T ss_pred CCEEEEecCCCCc-------hHHHHHHHHhhcc--ceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHH
Confidence 7999999998641 1222233333333 488876 3421 1 1110 0000 1111222223455
Q ss_pred HHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecC
Q psy5880 167 VVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNT 217 (328)
Q Consensus 167 v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~ 217 (328)
|++.+++++ .++||+.= ..-.+ ..++.+.+ .+||+.+-+...
T Consensus 234 V~~~~~~~~--~~i~Iig~-GGI~s---~~da~e~l---~aGA~~Vqv~Sa 275 (295)
T PF01180_consen 234 VRELRKALG--QDIPIIGV-GGIHS---GEDAIEFL---MAGASAVQVCSA 275 (295)
T ss_dssp HHHHHHHTT--TSSEEEEE-SS--S---HHHHHHHH---HHTESEEEESHH
T ss_pred HHHHHhccc--cceEEEEe-CCcCC---HHHHHHHH---HhCCCHheechh
Confidence 555554432 34776543 22234 34455544 799999977654
No 131
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=98.61 E-value=1.3e-07 Score=90.58 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=67.6
Q ss_pred HhHHHHHHHhhcCc-cceEEeccCCCCCcCccCC-----CchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccc
Q psy5880 42 LQFWLLGILKFGDV-AHYFVVNVSSPNTANLRKL-----QAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEK 115 (328)
Q Consensus 42 l~~y~~~~~~l~~~-~~~v~~n~sspN~~gl~~~-----~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n 115 (328)
.++|.+.++++... +||+++|+||||+++++.. ++++.+.+++++|++.. ..|+++|++|+++
T Consensus 126 ~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~-------~iPv~vKLsPn~t---- 194 (385)
T PLN02495 126 KDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA-------TVPVWAKMTPNIT---- 194 (385)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh-------cCceEEEeCCChh----
Confidence 35787888777655 8999999999999877764 68999999999998764 3799999999763
Q ss_pred cchhHHHHHHHHHHHHhcccccEEEE-c
Q psy5880 116 KDIADVVLDSVKGILKFGDVAHYFVV-N 142 (328)
Q Consensus 116 ~~~~~~i~~~~~~a~~~~~~~d~iei-N 142 (328)
.+.++++++.+.+ +|+|.+ |
T Consensus 195 -----~i~~ia~aa~~~G--adgi~liN 215 (385)
T PLN02495 195 -----DITQPARVALKSG--CEGVAAIN 215 (385)
T ss_pred -----hHHHHHHHHHHhC--CCEEEEec
Confidence 4888888888887 888765 5
No 132
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.61 E-value=7.5e-06 Score=74.39 Aligned_cols=163 Identities=23% Similarity=0.303 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcccccEEEEc--cCCCCCcc-------hhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVN--VSSPNTAN-------LRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL 190 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN--~scPn~~g-------~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~ 190 (328)
+...+++....+.+ +|.|||- +|-|..+| .+.++++-.+.++++.+++.++. ..++|+++-.=.+.
T Consensus 24 ~~~~~~~~~l~~~G--aD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~---~~~~pivlm~Y~N~ 98 (259)
T PF00290_consen 24 ETTLEILKALEEAG--ADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKK---EPDIPIVLMTYYNP 98 (259)
T ss_dssp HHHHHHHHHHHHTT--BSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHH---CTSSEEEEEE-HHH
T ss_pred HHHHHHHHHHHHcC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhcc---CCCCCEEEEeeccH
Confidence 44455555555555 9999987 46566543 12234444566666666665522 16889877531110
Q ss_pred -ChhhHHHHHHHhccccCCccEEEEecCCcc---------------------------chhh-h--cccc--ccccCCCC
Q psy5880 191 -SLDEKKDIADVVLDSKCKVDGLIVSNTTVD---------------------------RYEY-L--DARY--KEETGGLS 237 (328)
Q Consensus 191 -~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~---------------------------~~~~-~--~~~~--~~~~gg~s 237 (328)
-.--+..+++.+ .++|+||+.+-.-... +... . .... -...-|..
T Consensus 99 i~~~G~e~F~~~~--~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvT 176 (259)
T PF00290_consen 99 IFQYGIERFFKEA--KEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVT 176 (259)
T ss_dssp HHHH-HHHHHHHH--HHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSS
T ss_pred HhccchHHHHHHH--HHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCC
Confidence 000133455555 5666666655432111 0000 0 0000 01123344
Q ss_pred CCc--CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 238 GEP--LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 238 g~~--~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
|.. +...-.++++++|+..+ +||...=||++++++.++. .|||+|.|||+++
T Consensus 177 G~~~~~~~~l~~~i~~ik~~~~--~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v 230 (259)
T PF00290_consen 177 GSRTELPDELKEFIKRIKKHTD--LPVAVGFGISTPEQAKKLA-AGADGVIVGSAFV 230 (259)
T ss_dssp STTSSCHHHHHHHHHHHHHTTS--S-EEEESSS-SHHHHHHHH-TTSSEEEESHHHH
T ss_pred CCcccchHHHHHHHHHHHhhcC--cceEEecCCCCHHHHHHHH-ccCCEEEECHHHH
Confidence 432 22334578899999886 9999999999999999998 9999999999997
No 133
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.60 E-value=2e-06 Score=80.13 Aligned_cols=154 Identities=14% Similarity=0.196 Sum_probs=96.7
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhh
Q psy5880 76 AKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQ 155 (328)
Q Consensus 76 ~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~ 155 (328)
.++.+++.+..+++..+ .+|+.+.+..... .....+..+.+.+.+ ...+.+.+..|.
T Consensus 38 ~~e~l~~~i~~~~~l~t------dkPfGVnl~~~~~-------~~~~~~~l~vi~e~~--v~~V~~~~G~P~-------- 94 (320)
T cd04743 38 RGEQVKALLEETAELLG------DKPWGVGILGFVD-------TELRAAQLAVVRAIK--PTFALIAGGRPD-------- 94 (320)
T ss_pred CHHHHHHHHHHHHHhcc------CCCeEEEEeccCC-------CcchHHHHHHHHhcC--CcEEEEcCCChH--------
Confidence 46778877777766311 3576665532110 112345666666655 777776555332
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCC
Q psy5880 156 AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG 235 (328)
Q Consensus 156 ~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg 235 (328)
+ ++.+++ ..+.++...+. ...++.+ +++|+|+|++-+.- .||
T Consensus 95 ------~-~~~lk~--------~Gi~v~~~v~s-------~~~A~~a--~~~GaD~vVaqG~E--------------AGG 136 (320)
T cd04743 95 ------Q-ARALEA--------IGISTYLHVPS-------PGLLKQF--LENGARKFIFEGRE--------------CGG 136 (320)
T ss_pred ------H-HHHHHH--------CCCEEEEEeCC-------HHHHHHH--HHcCCCEEEEecCc--------------CcC
Confidence 1 133333 47788877653 3456778 89999999988753 255
Q ss_pred CCCC----cCchHHHHHHHHHHHHc----CCCccEEEecCCCCHHHHHHHHHhcc--------CeeeehhHHhh
Q psy5880 236 LSGE----PLRNKSTELISEMYKLT----KGKLPIIGVGGVFSGKDAFEKIKAGA--------SLVQIYTSFVY 293 (328)
Q Consensus 236 ~sg~----~~~~~~l~~v~~i~~~~----~~~ipvia~GGI~s~~da~~~l~~GA--------d~V~vg~a~l~ 293 (328)
+.|+ .++|..++. +.+.. ..++|||+.|||.+++.+..++..|| +.|++||.|+.
T Consensus 137 H~G~~~t~~L~~~v~~~---l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~ 207 (320)
T cd04743 137 HVGPRSSFVLWESAIDA---LLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLF 207 (320)
T ss_pred CCCCCCchhhHHHHHHH---HHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhc
Confidence 5542 222222222 22221 01499999999999999999999988 79999999985
No 134
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.58 E-value=1.8e-06 Score=74.80 Aligned_cols=147 Identities=20% Similarity=0.201 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhcccccEEEE-ccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVV-NVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~iei-N~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+.+.|..+++ ++ +|.+|| ||-|=...|. .+ . ..|++.-.++.|+.+ +++|+.|-++..++.++-.+++
T Consensus 70 ep~~f~~aV~-AG--AdliEIGNfDsFY~qGr-~f-~---a~eVL~Lt~~tR~LL---P~~~LsVTVPHiL~ld~Qv~LA 138 (242)
T PF04481_consen 70 EPELFVAAVK-AG--ADLIEIGNFDSFYAQGR-RF-S---AEEVLALTRETRSLL---PDITLSVTVPHILPLDQQVQLA 138 (242)
T ss_pred CHHHHHHHHH-hC--CCEEEecchHHHHhcCC-ee-c---HHHHHHHHHHHHHhC---CCCceEEecCccccHHHHHHHH
Confidence 4667776654 44 999998 5554222222 12 1 334444444454445 6899999999988888889999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCc-hHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLR-NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~-~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
..| +++|+|.|-.-+.+...| ...|..|.-.+ ..+|...+.+.+.++ +||+..-|+++. -+--++
T Consensus 139 ~~L--~~~GaDiIQTEGgtss~p---------~~~g~lglIekaapTLAaay~ISr~v~--iPVlcASGlS~v-T~PmAi 204 (242)
T PF04481_consen 139 EDL--VKAGADIIQTEGGTSSKP---------TSPGILGLIEKAAPTLAAAYAISRAVS--IPVLCASGLSAV-TAPMAI 204 (242)
T ss_pred HHH--HHhCCcEEEcCCCCCCCC---------CCcchHHHHHHHhHHHHHHHHHHhccC--CceEeccCcchh-hHHHHH
Confidence 999 999999986544333322 11222222111 134677778888887 999999999765 455577
Q ss_pred HhccCeeeehhHHh
Q psy5880 279 KAGASLVQIYTSFV 292 (328)
Q Consensus 279 ~~GAd~V~vg~a~l 292 (328)
.+||+.|+||+++=
T Consensus 205 aaGAsGVGVGSavn 218 (242)
T PF04481_consen 205 AAGASGVGVGSAVN 218 (242)
T ss_pred HcCCcccchhHHhh
Confidence 89999999999983
No 135
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=98.54 E-value=7.1e-06 Score=77.39 Aligned_cols=143 Identities=14% Similarity=0.183 Sum_probs=87.0
Q ss_pred HHHHHHHhhcCccceEEeccCCCC-CcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHH
Q psy5880 44 FWLLGILKFGDVAHYFVVNVSSPN-TANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVV 122 (328)
Q Consensus 44 ~y~~~~~~l~~~~~~v~~n~sspN-~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i 122 (328)
+|.+++++.. +|++++|+|||| +++++..+..+.+.+++.++++.. ..|+++|++|+++ .+
T Consensus 116 ~~a~~~~~~g--ad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-------~iPv~vKl~p~~~---------~~ 177 (325)
T cd04739 116 DYARQIEEAG--ADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-------TIPVAVKLSPFFS---------AL 177 (325)
T ss_pred HHHHHHHhcC--CCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-------CCCEEEEcCCCcc---------CH
Confidence 5666666554 799999999865 467766655566778888877663 3799999998752 47
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCc-chhh--------hhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTA-NLRK--------LQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLD 193 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~-g~~~--------~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~ 193 (328)
.++++.+++++ +|+|.+.-+-+... .... +..+......++.|++.++. .++||+. ..++..
T Consensus 178 ~~~a~~l~~~G--adgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~----~~ipIig--~GGI~s- 248 (325)
T cd04739 178 AHMAKQLDAAG--ADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGR----VKASLAA--SGGVHD- 248 (325)
T ss_pred HHHHHHHHHcC--CCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcc----cCCCEEE--ECCCCC-
Confidence 78888888877 99988743222211 0000 00011111223344444322 5788876 233332
Q ss_pred hHHHHHHHhccccCCccEEEEecC
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNT 217 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~ 217 (328)
..++.+.+ . +||+++-+...
T Consensus 249 -~~Da~e~l--~-aGA~~Vqv~ta 268 (325)
T cd04739 249 -AEDVVKYL--L-AGADVVMTTSA 268 (325)
T ss_pred -HHHHHHHH--H-cCCCeeEEehh
Confidence 44566666 4 89999977643
No 136
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=2e-06 Score=73.93 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=80.7
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
+++.|.+..++-..+ ++ .+.++++.++. .+.-++..++. +++. ..+ .++|+|+|
T Consensus 98 Ga~IIA~DaT~R~RP------~~-~~~~~i~~~k~--------~~~l~MAD~St------~ee~-l~a--~~~G~D~I-- 151 (229)
T COG3010 98 GADIIAFDATDRPRP------DG-DLEELIARIKY--------PGQLAMADCST------FEEG-LNA--HKLGFDII-- 151 (229)
T ss_pred CCcEEEeecccCCCC------cc-hHHHHHHHhhc--------CCcEEEeccCC------HHHH-HHH--HHcCCcEE--
Confidence 488888776642221 22 46667666332 45667777664 2332 334 68899988
Q ss_pred ecCCccchhhhccccccccCCCCCCcCc--hHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLR--NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~--~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
+|+.. ||.+.... ...+.+++++.+ .+ ++||+-|.++||+.+.++++.||++|.||+++
T Consensus 152 -GTTLs--------------GYT~~~~~~~~pDf~lvk~l~~-~~--~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAI- 212 (229)
T COG3010 152 -GTTLS--------------GYTGYTEKPTEPDFQLVKQLSD-AG--CRVIAEGRYNTPEQAKKAIEIGADAVVVGSAI- 212 (229)
T ss_pred -ecccc--------------cccCCCCCCCCCcHHHHHHHHh-CC--CeEEeeCCCCCHHHHHHHHHhCCeEEEECccc-
Confidence 44432 23331111 234678888877 33 99999999999999999999999999999998
Q ss_pred hcCchHHHHH
Q psy5880 293 YHGPPLVTRI 302 (328)
Q Consensus 293 ~~gp~~~~~i 302 (328)
..|..+.++
T Consensus 213 -TRp~~It~~ 221 (229)
T COG3010 213 -TRPEEITQW 221 (229)
T ss_pred -CCHHHHHHH
Confidence 348654443
No 137
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.52 E-value=4.8e-06 Score=73.03 Aligned_cols=44 Identities=32% Similarity=0.345 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 243 NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 243 ~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
+.+.++++++++.++ +|++..|||+|++++.+++.+|||.|.+|
T Consensus 162 ~v~~e~i~~Vk~~~~--~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 162 PVNPETISLVKKASG--IPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCCHHHHHHHHHhhC--CCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 345788999999886 99999999999999999999999999886
No 138
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.51 E-value=2.1e-06 Score=76.42 Aligned_cols=81 Identities=19% Similarity=0.271 Sum_probs=59.1
Q ss_pred HHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHH
Q psy5880 196 KDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAF 275 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~ 275 (328)
...++.+ .++|++.|.-.+... | +|..+. .-++++.+++..+ +|||+.|||.+++|+.
T Consensus 134 ~~~ar~l--~~~G~~~vmPlg~pI--------------G--sg~Gi~--~~~~I~~I~e~~~--vpVI~egGI~tpeda~ 191 (248)
T cd04728 134 PVLAKRL--EDAGCAAVMPLGSPI--------------G--SGQGLL--NPYNLRIIIERAD--VPVIVDAGIGTPSDAA 191 (248)
T ss_pred HHHHHHH--HHcCCCEeCCCCcCC--------------C--CCCCCC--CHHHHHHHHHhCC--CcEEEeCCCCCHHHHH
Confidence 3568888 899999982222111 1 111111 1366778887755 9999999999999999
Q ss_pred HHHHhccCeeeehhHHhh-cCchH
Q psy5880 276 EKIKAGASLVQIYTSFVY-HGPPL 298 (328)
Q Consensus 276 ~~l~~GAd~V~vg~a~l~-~gp~~ 298 (328)
+++++|||+|.++|++.. ++|..
T Consensus 192 ~AmelGAdgVlV~SAIt~a~dP~~ 215 (248)
T cd04728 192 QAMELGADAVLLNTAIAKAKDPVA 215 (248)
T ss_pred HHHHcCCCEEEEChHhcCCCCHHH
Confidence 999999999999999974 45754
No 139
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.51 E-value=1.8e-06 Score=84.30 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=59.5
Q ss_pred HHHHHHHhhcCccceEEeccCCCCCcCccC-----CCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccch
Q psy5880 44 FWLLGILKFGDVAHYFVVNVSSPNTANLRK-----LQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDI 118 (328)
Q Consensus 44 ~y~~~~~~l~~~~~~v~~n~sspN~~gl~~-----~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~ 118 (328)
+|...+++.. +|++++|+||||+.+.+. .++++.+.++++++++.. ..|+++|++|+++
T Consensus 117 ~~a~~~~~~g--~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-------~~Pv~vKl~p~~~------- 180 (420)
T PRK08318 117 EIAPLVEETG--ADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-------RLPVIVKLTPNIT------- 180 (420)
T ss_pred HHHHHHHhcC--CCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-------CCcEEEEcCCCcc-------
Confidence 4655555543 899999999999754433 357888999999998763 3799999998753
Q ss_pred hHHHHHHHHHHHHhcccccEEEE
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVV 141 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~iei 141 (328)
.+.++++.++.++ +|+|.+
T Consensus 181 --~~~~~a~~~~~~G--adgi~~ 199 (420)
T PRK08318 181 --DIREPARAAKRGG--ADAVSL 199 (420)
T ss_pred --cHHHHHHHHHHCC--CCEEEE
Confidence 4778888888877 888873
No 140
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.50 E-value=6.9e-07 Score=80.74 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=73.4
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++|+.+ .+.|++.+++..-... .| .+.+++.++++.+.+. +||...|||+|.+|
T Consensus 33 dp~~~a~~~--~~~g~~~l~ivDLd~~----------------~g---~~~n~~~i~~i~~~~~--~pv~vgGGirs~ed 89 (241)
T PRK14024 33 SPLDAALAW--QRDGAEWIHLVDLDAA----------------FG---RGSNRELLAEVVGKLD--VKVELSGGIRDDES 89 (241)
T ss_pred CHHHHHHHH--HHCCCCEEEEEecccc----------------CC---CCccHHHHHHHHHHcC--CCEEEcCCCCCHHH
Confidence 467899999 8999999988752110 11 2235688999999887 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+.+++.+||+-|.+|++++ ++|+++.++.+..
T Consensus 90 v~~~l~~Ga~kvviGs~~l-~~p~l~~~i~~~~ 121 (241)
T PRK14024 90 LEAALATGCARVNIGTAAL-ENPEWCARVIAEH 121 (241)
T ss_pred HHHHHHCCCCEEEECchHh-CCHHHHHHHHHHh
Confidence 9999999999999999998 5699999887654
No 141
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.49 E-value=8.7e-07 Score=77.79 Aligned_cols=91 Identities=15% Similarity=0.294 Sum_probs=62.2
Q ss_pred HHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
+..+ .+.|+|++.++...... +.+...+..++.++++++.++ +||++.||| +++++.+++
T Consensus 108 a~~a--~~~Gadyi~~g~v~~t~---------------~k~~~~~~g~~~l~~~~~~~~--ipvia~GGI-~~~~~~~~~ 167 (201)
T PRK07695 108 AIQA--EKNGADYVVYGHVFPTD---------------CKKGVPARGLEELSDIARALS--IPVIAIGGI-TPENTRDVL 167 (201)
T ss_pred HHHH--HHcCCCEEEECCCCCCC---------------CCCCCCCCCHHHHHHHHHhCC--CCEEEEcCC-CHHHHHHHH
Confidence 4556 78999999654322210 111111224577888888776 999999999 999999999
Q ss_pred HhccCeeeehhHHhhc-Cc-hHHHHHHHHHHHH
Q psy5880 279 KAGASLVQIYTSFVYH-GP-PLVTRIKSELEEL 309 (328)
Q Consensus 279 ~~GAd~V~vg~a~l~~-gp-~~~~~i~~~l~~~ 309 (328)
++||++|+++++++.. +| ..++++.+.+..|
T Consensus 168 ~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~~~ 200 (201)
T PRK07695 168 AAGVSGIAVMSGIFSSANPYSKAKRYAESIKKW 200 (201)
T ss_pred HcCCCEEEEEHHHhcCCCHHHHHHHHHHHHhhc
Confidence 9999999999999742 33 2344455444444
No 142
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.48 E-value=3.2e-06 Score=78.92 Aligned_cols=154 Identities=15% Similarity=0.133 Sum_probs=97.3
Q ss_pred CcccccCCCCcCChhhHHHHHHHhHHHHHHHhhcCc--cceEEeccCCCCCcC--ccCCCchHHHHHHHHHHHHHhhhhc
Q psy5880 20 GEWGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDV--AHYFVVNVSSPNTAN--LRKLQAKDQLKHLLKTVVETRNQLA 95 (328)
Q Consensus 20 ~~~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l~~~--~~~v~~n~sspN~~g--l~~~~~~~~L~~ll~~v~~~~~~~~ 95 (328)
..+++++..+. .++|.+.++++... +|++++|+||||+.+ ..-.++++.+.+++++|++..
T Consensus 92 ~p~i~si~g~~-----------~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~---- 156 (301)
T PRK07259 92 TPIIANVAGST-----------EEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV---- 156 (301)
T ss_pred CcEEEEeccCC-----------HHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc----
Confidence 34777775443 24788888888777 799999999999863 555567888999999998774
Q ss_pred CCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEE-ccCCC---CCc----------chhhh-hhhHHH
Q psy5880 96 LKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVV-NVSSP---NTA----------NLRKL-QAKDQL 160 (328)
Q Consensus 96 ~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~iei-N~scP---n~~----------g~~~~-~~~~~~ 160 (328)
..|+++|+++++ ++..++++.++.++ +|+|.+ |.+.- +.. +..+. ......
T Consensus 157 ---~~pv~vKl~~~~---------~~~~~~a~~l~~~G--~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~ 222 (301)
T PRK07259 157 ---KVPVIVKLTPNV---------TDIVEIAKAAEEAG--ADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIA 222 (301)
T ss_pred ---CCCEEEEcCCCc---------hhHHHHHHHHHHcC--CCEEEEEccccccccccccCceeecCCcCccCCcCccccc
Confidence 379999998754 24566777777666 898875 43211 000 00000 001123
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEec
Q psy5880 161 KHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 161 ~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
.+.+..+++. .++||+.= .++.. ..++.+.+ .+|+|+|.+..
T Consensus 223 l~~v~~i~~~-------~~ipvi~~--GGI~~--~~da~~~l---~aGAd~V~igr 264 (301)
T PRK07259 223 LRMVYQVYQA-------VDIPIIGM--GGISS--AEDAIEFI---MAGASAVQVGT 264 (301)
T ss_pred HHHHHHHHHh-------CCCCEEEE--CCCCC--HHHHHHHH---HcCCCceeEcH
Confidence 4555555554 57898752 33321 33444445 58999986653
No 143
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.48 E-value=7.4e-07 Score=85.03 Aligned_cols=101 Identities=17% Similarity=0.248 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCC
Q psy5880 157 KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGL 236 (328)
Q Consensus 157 ~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~ 236 (328)
++.+.++++++++. .+++.+|+++ ++..++++.+ .++|+|.|++++|+... .+
T Consensus 117 p~l~~~iv~~~~~~--------~V~v~vr~~~----~~~~e~a~~l--~eaGvd~I~vhgrt~~~-------------~h 169 (368)
T PRK08649 117 PELITERIAEIRDA--------GVIVAVSLSP----QRAQELAPTV--VEAGVDLFVIQGTVVSA-------------EH 169 (368)
T ss_pred HHHHHHHHHHHHhC--------eEEEEEecCC----cCHHHHHHHH--HHCCCCEEEEeccchhh-------------hc
Confidence 55667777777653 3556566533 2367889999 99999999999987531 12
Q ss_pred CCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhH
Q psy5880 237 SGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 237 sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a 290 (328)
.+..-.+ ..+.++.+..+ +|||+ |+|.|++++.+++++|||+|++|++
T Consensus 170 ~~~~~~~---~~i~~~ik~~~--ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 170 VSKEGEP---LNLKEFIYELD--VPVIV-GGCVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred cCCcCCH---HHHHHHHHHCC--CCEEE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 2221111 22344444455 99999 9999999999999999999999854
No 144
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.47 E-value=4.7e-06 Score=77.20 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=97.7
Q ss_pred CcccccCCCCcCChhhHHHHHHHhHHHHHHHhhcCc-cceEEeccCCCCCcCccC-CCchHHHHHHHHHHHHHhhhhcCC
Q psy5880 20 GEWGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDV-AHYFVVNVSSPNTANLRK-LQAKDQLKHLLKTVVETRNQLALK 97 (328)
Q Consensus 20 ~~~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l~~~-~~~v~~n~sspN~~gl~~-~~~~~~L~~ll~~v~~~~~~~~~~ 97 (328)
..+.+++..+.. ++|.+.++.+... +|++++|+||||....+. +++++.+.++++++++..
T Consensus 99 ~pvi~si~g~~~-----------~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~------ 161 (289)
T cd02810 99 QPLIASVGGSSK-----------EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV------ 161 (289)
T ss_pred CeEEEEeccCCH-----------HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc------
Confidence 447777766532 3677777777666 899999999999876554 346778888999888764
Q ss_pred CCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCC--------cchh--hhh---h--hHHHHH
Q psy5880 98 PLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNT--------ANLR--KLQ---A--KDQLKH 162 (328)
Q Consensus 98 ~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~--------~g~~--~~~---~--~~~~~~ 162 (328)
..|+++|+.+..+ .+...++++.+..++ +|+|.+.-+.+.. ++.. ... . .....+
T Consensus 162 -~~pv~vKl~~~~~-------~~~~~~~a~~l~~~G--ad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~ 231 (289)
T cd02810 162 -DIPLLVKLSPYFD-------LEDIVELAKAAERAG--ADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALR 231 (289)
T ss_pred -CCCEEEEeCCCCC-------HHHHHHHHHHHHHcC--CCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHH
Confidence 3699999998652 345667777777766 9999874221100 0000 000 0 112344
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEec
Q psy5880 163 LLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 163 i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
.++.+++. ++ .++||+. ..++.. ..++.+.+ ++|+|++.+..
T Consensus 232 ~v~~i~~~---~~--~~ipiia--~GGI~~--~~da~~~l---~~GAd~V~vg~ 273 (289)
T cd02810 232 WVARLAAR---LQ--LDIPIIG--VGGIDS--GEDVLEML---MAGASAVQVAT 273 (289)
T ss_pred HHHHHHHh---cC--CCCCEEE--ECCCCC--HHHHHHHH---HcCccHheEcH
Confidence 45555544 11 1678765 333332 34455555 58999987654
No 145
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.46 E-value=9.5e-07 Score=79.22 Aligned_cols=90 Identities=23% Similarity=0.223 Sum_probs=72.7
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+.|++.++++.-.. -..| .+..++.++++++.++ +||++.|||++.+|
T Consensus 31 ~~~~~a~~~--~~~g~~~i~v~dld~---------------~~~g---~~~~~~~i~~i~~~~~--~pv~~~GGI~~~ed 88 (233)
T PRK00748 31 DPVAQAKAW--EDQGAKWLHLVDLDG---------------AKAG---KPVNLELIEAIVKAVD--IPVQVGGGIRSLET 88 (233)
T ss_pred CHHHHHHHH--HHcCCCEEEEEeCCc---------------cccC---CcccHHHHHHHHHHCC--CCEEEcCCcCCHHH
Confidence 478899999 899999999876311 0112 1234788899988886 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+.+++.+||+.|.+|++++ .+|+++.++.+..
T Consensus 89 ~~~~~~~Ga~~vilg~~~l-~~~~~l~ei~~~~ 120 (233)
T PRK00748 89 VEALLDAGVSRVIIGTAAV-KNPELVKEACKKF 120 (233)
T ss_pred HHHHHHcCCCEEEECchHH-hCHHHHHHHHHHh
Confidence 9999999999999999997 5698888776653
No 146
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.46 E-value=3.5e-06 Score=75.08 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=58.4
Q ss_pred HHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHH
Q psy5880 196 KDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAF 275 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~ 275 (328)
...++++ .++|++.|--.+... | +|..+. .-++++.+++..+ +|||+.|||++++|+.
T Consensus 134 ~~~ak~l--~~~G~~~vmPlg~pI--------------G--sg~gi~--~~~~i~~i~e~~~--vpVIveaGI~tpeda~ 191 (250)
T PRK00208 134 PVLAKRL--EEAGCAAVMPLGAPI--------------G--SGLGLL--NPYNLRIIIEQAD--VPVIVDAGIGTPSDAA 191 (250)
T ss_pred HHHHHHH--HHcCCCEeCCCCcCC--------------C--CCCCCC--CHHHHHHHHHhcC--CeEEEeCCCCCHHHHH
Confidence 3567888 899999982211111 1 111121 1355777777755 9999999999999999
Q ss_pred HHHHhccCeeeehhHHhh-cCchH
Q psy5880 276 EKIKAGASLVQIYTSFVY-HGPPL 298 (328)
Q Consensus 276 ~~l~~GAd~V~vg~a~l~-~gp~~ 298 (328)
+++++|||+|.++|++.. .+|..
T Consensus 192 ~AmelGAdgVlV~SAItka~dP~~ 215 (250)
T PRK00208 192 QAMELGADAVLLNTAIAVAGDPVA 215 (250)
T ss_pred HHHHcCCCEEEEChHhhCCCCHHH
Confidence 999999999999999974 35654
No 147
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.46 E-value=1.7e-05 Score=70.55 Aligned_cols=145 Identities=19% Similarity=0.231 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
...|++....++ +|.|.+|.-+.. .+.++++.+|+. ++-..+=+.|..+.+.+..+++.
T Consensus 70 p~~~i~~~~~~g--ad~i~~H~Ea~~-----------~~~~~l~~ik~~--------g~k~GlalnP~Tp~~~i~~~l~~ 128 (220)
T PRK08883 70 VDRIIPDFAKAG--ASMITFHVEASE-----------HVDRTLQLIKEH--------GCQAGVVLNPATPLHHLEYIMDK 128 (220)
T ss_pred HHHHHHHHHHhC--CCEEEEcccCcc-----------cHHHHHHHHHHc--------CCcEEEEeCCCCCHHHHHHHHHh
Confidence 566777776777 999998876311 145666777763 55668888888776555555443
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC---CccEEEecCCCCHHHHHHHH
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG---KLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~---~ipvia~GGI~s~~da~~~l 278 (328)
+|.|.+-+.. .|++|-...+..++.++++++..+. ++||.+-|||+ .+.+.++.
T Consensus 129 -------~D~vlvMtV~---------------PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~ 185 (220)
T PRK08883 129 -------VDLILLMSVN---------------PGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIA 185 (220)
T ss_pred -------CCeEEEEEec---------------CCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHH
Confidence 4677654322 2344545557778888888887632 48999999998 99999999
Q ss_pred HhccCeeeehhHHhhcCchHHHHHHHHHHHHHHH
Q psy5880 279 KAGASLVQIYTSFVYHGPPLVTRIKSELEELLQK 312 (328)
Q Consensus 279 ~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~ 312 (328)
++|||.+.+||+++. ..+ +.+..+.+++.+.+
T Consensus 186 ~aGAd~vVvGSaIf~-~~d-~~~~i~~l~~~~~~ 217 (220)
T PRK08883 186 EAGADMFVAGSAIFG-QPD-YKAVIDEMRAELAK 217 (220)
T ss_pred HcCCCEEEEeHHHhC-CCC-HHHHHHHHHHHHHh
Confidence 999999999999863 344 33334444544443
No 148
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=98.45 E-value=6.8e-07 Score=83.72 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=59.6
Q ss_pred hHHHHHHHhhc--CccceEEeccCCCCCcCccCCC-chHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchh
Q psy5880 43 QFWLLGILKFG--DVAHYFVVNVSSPNTANLRKLQ-AKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIA 119 (328)
Q Consensus 43 ~~y~~~~~~l~--~~~~~v~~n~sspN~~gl~~~~-~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~ 119 (328)
++|.+.++++. .++||+++|+||||+++.+.++ +++.+.+++++|++.. .+|+++|++|+++
T Consensus 105 ~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~-------~~Pv~vKlsp~~~-------- 169 (310)
T PRK02506 105 EETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYF-------TKPLGVKLPPYFD-------- 169 (310)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhc-------CCccEEecCCCCC--------
Confidence 46777777663 3589999999999999877777 5788999999998774 3799999999863
Q ss_pred HHHHHHHHHHHHhcc-cccEE
Q psy5880 120 DVVLDSVKGILKFGD-VAHYF 139 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~-~~d~i 139 (328)
+.++++++..+.. +++++
T Consensus 170 --~~~~a~~~~~~~~~g~~~i 188 (310)
T PRK02506 170 --IVHFDQAAAIFNKFPLAFV 188 (310)
T ss_pred --HHHHHHHHHHhCcCceEEE
Confidence 3555556655543 34443
No 149
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.45 E-value=7.7e-06 Score=74.73 Aligned_cols=148 Identities=17% Similarity=0.116 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
...++++....++ +++|-+..- |. ....+ .+.+++|++. .++||+.|= +... ..+ +.
T Consensus 71 ~~~~~A~~~~~~G--A~aisvlte-~~----~f~g~----~~~l~~v~~~-------v~iPvl~kd--fi~~--~~q-i~ 127 (260)
T PRK00278 71 DPVEIAKAYEAGG--AACLSVLTD-ER----FFQGS----LEYLRAARAA-------VSLPVLRKD--FIID--PYQ-IY 127 (260)
T ss_pred CHHHHHHHHHhCC--CeEEEEecc-cc----cCCCC----HHHHHHHHHh-------cCCCEEeee--ecCC--HHH-HH
Confidence 5678888877776 899854222 11 11111 3556666665 689999853 2222 234 45
Q ss_pred HhccccCCccEEEEecCCccch---h--------hhcc--------------ccccccCCCCCCc--CchHHHHHHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRY---E--------YLDA--------------RYKEETGGLSGEP--LRNKSTELISEMY 253 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~---~--------~~~~--------------~~~~~~gg~sg~~--~~~~~l~~v~~i~ 253 (328)
.+ .++|+|+|++..+..... + +..+ ......=|+.+.. .....++.+.++.
T Consensus 128 ~a--~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~ 205 (260)
T PRK00278 128 EA--RAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLA 205 (260)
T ss_pred HH--HHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHH
Confidence 56 789999999887663210 0 0000 0000111122211 1122356667777
Q ss_pred HHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 254 KLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 254 ~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
+.+++..++|+.|||.|++|+.+++.+|||+|.||++++.
T Consensus 206 ~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 206 PLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMR 245 (260)
T ss_pred HhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 7775557999999999999999999999999999999984
No 150
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.43 E-value=4.7e-06 Score=73.55 Aligned_cols=123 Identities=19% Similarity=0.140 Sum_probs=80.0
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeC-CCCChhhHHHHHHHhccccCCccEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIA-PDLSLDEKKDIADVVLDSKCKVDGLI 213 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~-~~~~~~~~~~~a~~l~~~~~G~d~i~ 213 (328)
++|.|++-+. . +.-...+.+.+.+-+.+|++.+ .++|+.|=+. ..++++++...++.+ .++|+|+|-
T Consensus 83 GAdEiDvv~n---~-g~l~~g~~~~v~~ei~~i~~~~------~g~~lKvIlE~~~L~~~ei~~a~~ia--~eaGADfvK 150 (211)
T TIGR00126 83 GADEVDMVIN---I-GALKDGNEEVVYDDIRAVVEAC------AGVLLKVIIETGLLTDEEIRKACEIC--IDAGADFVK 150 (211)
T ss_pred CCCEEEeecc---h-HhhhCCcHHHHHHHHHHHHHHc------CCCeEEEEEecCCCCHHHHHHHHHHH--HHhCCCEEE
Confidence 4888876333 1 1111122334444455555542 2566655332 347778888999999 999999995
Q ss_pred EecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhH
Q psy5880 214 VSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 214 ~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a 290 (328)
.+.++ .+.. ..++-++.+++.++++++|-++|||+|.+++.+++.+||+.++..++
T Consensus 151 TsTGf------------------~~~g---at~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGts~~ 206 (211)
T TIGR00126 151 TSTGF------------------GAGG---ATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGASAG 206 (211)
T ss_pred eCCCC------------------CCCC---CCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcchH
Confidence 44321 1111 23456677777776679999999999999999999999998865443
No 151
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.41 E-value=6e-06 Score=77.00 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=61.1
Q ss_pred hHHHHHHHhhc---CccceEEeccCCCCCcC--ccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccc
Q psy5880 43 QFWLLGILKFG---DVAHYFVVNVSSPNTAN--LRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKD 117 (328)
Q Consensus 43 ~~y~~~~~~l~---~~~~~v~~n~sspN~~g--l~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~ 117 (328)
++|.+.++.+. ..+|++++|+||||+.| ..-.++++.+.++++++++.. ..|+.+|+.++.
T Consensus 103 ~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-------~~pv~vKi~~~~------- 168 (300)
T TIGR01037 103 EEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-------DVPVFAKLSPNV------- 168 (300)
T ss_pred HHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-------CCCEEEECCCCh-------
Confidence 46777777665 45899999999999975 233457888899999888764 369999998643
Q ss_pred hhHHHHHHHHHHHHhcccccEEEEc
Q psy5880 118 IADVVLDSVKGILKFGDVAHYFVVN 142 (328)
Q Consensus 118 ~~~~i~~~~~~a~~~~~~~d~ieiN 142 (328)
+...++++.++.++ +|+|.++
T Consensus 169 --~~~~~~a~~l~~~G--~d~i~v~ 189 (300)
T TIGR01037 169 --TDITEIAKAAEEAG--ADGLTLI 189 (300)
T ss_pred --hhHHHHHHHHHHcC--CCEEEEE
Confidence 24567777777766 9999864
No 152
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.40 E-value=1.8e-06 Score=75.52 Aligned_cols=90 Identities=23% Similarity=0.347 Sum_probs=74.4
Q ss_pred hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHH
Q psy5880 193 DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK 272 (328)
Q Consensus 193 ~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~ 272 (328)
.++.++|+.. .+.|+|-++.-.-+.+. .| +...++++++..+.+. ||+...|||++.+
T Consensus 30 GDpVelA~~Y--~e~GADElvFlDItAs~---------------~g---r~~~~~vv~r~A~~vf--iPltVGGGI~s~e 87 (256)
T COG0107 30 GDPVELAKRY--NEEGADELVFLDITASS---------------EG---RETMLDVVERVAEQVF--IPLTVGGGIRSVE 87 (256)
T ss_pred CChHHHHHHH--HHcCCCeEEEEeccccc---------------cc---chhHHHHHHHHHhhce--eeeEecCCcCCHH
Confidence 3578999999 99999998765433220 11 2345799999999998 9999999999999
Q ss_pred HHHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 273 DAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 273 da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
|+.+.|.+|||=|.|-|+.+. +|++++++.+.
T Consensus 88 D~~~ll~aGADKVSINsaAv~-~p~lI~~~a~~ 119 (256)
T COG0107 88 DARKLLRAGADKVSINSAAVK-DPELITEAADR 119 (256)
T ss_pred HHHHHHHcCCCeeeeChhHhc-ChHHHHHHHHH
Confidence 999999999999999999985 69999988653
No 153
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.40 E-value=5.3e-05 Score=65.57 Aligned_cols=134 Identities=21% Similarity=0.202 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC--ChhhHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL--SLDEKKDI 198 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~--~~~~~~~~ 198 (328)
...+.++.+.+++ +|++.+. +|. ..+...+.+.+.+.+++|.+.. . .++|++++..|.. +.+.+.++
T Consensus 66 ~~~~~a~~a~~~G--ad~i~v~--~~~--~~~~~~~~~~~~~~~~~i~~~~-~----~~~pv~iy~~p~~~~~~~~~~~~ 134 (201)
T cd00945 66 VKVAEVEEAIDLG--ADEIDVV--INI--GSLKEGDWEEVLEEIAAVVEAA-D----GGLPLKVILETRGLKTADEIAKA 134 (201)
T ss_pred HHHHHHHHHHHcC--CCEEEEe--ccH--HHHhCCCHHHHHHHHHHHHHHh-c----CCceEEEEEECCCCCCHHHHHHH
Confidence 3344444444444 9999852 111 1111112456667777766652 1 4799999998764 44566777
Q ss_pred HHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
++.+ .+.|+++|-.+.... ++. ..+..++++++..+.++|++..||+.+++.+.+++
T Consensus 135 ~~~~--~~~g~~~iK~~~~~~-----------------~~~----~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~ 191 (201)
T cd00945 135 ARIA--AEAGADFIKTSTGFG-----------------GGG----ATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAI 191 (201)
T ss_pred HHHH--HHhCCCEEEeCCCCC-----------------CCC----CCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHH
Confidence 7777 789999997554211 111 12355677777764348999999999999999999
Q ss_pred HhccCeeeeh
Q psy5880 279 KAGASLVQIY 288 (328)
Q Consensus 279 ~~GAd~V~vg 288 (328)
..||+.+.+|
T Consensus 192 ~~Ga~g~~~g 201 (201)
T cd00945 192 EAGADGIGTS 201 (201)
T ss_pred HhccceeecC
Confidence 9999998764
No 154
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.38 E-value=5.7e-06 Score=72.56 Aligned_cols=105 Identities=20% Similarity=0.289 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe---CCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccc
Q psy5880 156 AKDQLKHLLKTVVETRNQLAVKPLPPILVKI---APDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEE 232 (328)
Q Consensus 156 ~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl---~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~ 232 (328)
+.+.+.+=+++|++++ .+ ++.+|. .+.++.++....++.+ .++|+|+|--+.++
T Consensus 107 ~~~~V~~eI~~v~~a~------~~-~~~lKVIlEt~~Lt~ee~~~A~~i~--~~aGAdFVKTSTGf-------------- 163 (228)
T COG0274 107 NWEAVEREIRAVVEAC------AD-AVVLKVILETGLLTDEEKRKACEIA--IEAGADFVKTSTGF-------------- 163 (228)
T ss_pred CHHHHHHHHHHHHHHh------CC-CceEEEEEeccccCHHHHHHHHHHH--HHhCCCEEEcCCCC--------------
Confidence 4456667677777774 22 256665 4568888888999999 99999999533221
Q ss_pred cCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhH
Q psy5880 233 TGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 233 ~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a 290 (328)
..+ ...++.++.+++.+++++.|-++|||+|.+|+..++.+||.-++..++
T Consensus 164 ---~~~----gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs~ 214 (228)
T COG0274 164 ---SAG----GATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAGATRIGTSSG 214 (228)
T ss_pred ---CCC----CCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHhHHHhccccH
Confidence 111 123577888888887789999999999999999999999887765544
No 155
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.37 E-value=9.4e-06 Score=72.99 Aligned_cols=77 Identities=22% Similarity=0.313 Sum_probs=63.0
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+.|+..+.+++-... |..+|+ .++.++++.+..+ +||+++|||+|.+|
T Consensus 149 ~~~~~~~~~--~~~g~~~ii~tdi~~d-------------Gt~~G~-----~~~li~~l~~~~~--ipvi~~GGi~s~ed 206 (234)
T PRK13587 149 NLFSFVRQL--SDIPLGGIIYTDIAKD-------------GKMSGP-----NFELTGQLVKATT--IPVIASGGIRHQQD 206 (234)
T ss_pred CHHHHHHHH--HHcCCCEEEEecccCc-------------CCCCcc-----CHHHHHHHHHhCC--CCEEEeCCCCCHHH
Confidence 367888988 8999999877654322 334554 3577888888776 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHh
Q psy5880 274 AFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l 292 (328)
+.+++++|++.|.+|++++
T Consensus 207 i~~l~~~G~~~vivG~a~~ 225 (234)
T PRK13587 207 IQRLASLNVHAAIIGKAAH 225 (234)
T ss_pred HHHHHHcCCCEEEEhHHHH
Confidence 9999999999999999996
No 156
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.37 E-value=2.9e-05 Score=69.72 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCC-------CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccc
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPD-------LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEE 232 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~-------~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~ 232 (328)
..+.+..+++.++. ..+|+++=.... .+.+++...++.+ .++|+|+|-+.++
T Consensus 107 ~~~~i~~v~~~~~~----~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a--~~~GaD~Ik~~~~--------------- 165 (235)
T cd00958 107 MLEELARVAAEAHK----YGLPLIAWMYPRGPAVKNEKDPDLIAYAARIG--AELGADIVKTKYT--------------- 165 (235)
T ss_pred HHHHHHHHHHHHHH----cCCCEEEEEeccCCcccCccCHHHHHHHHHHH--HHHCCCEEEecCC---------------
Confidence 34444455554332 578998844321 2334455557777 8899999965321
Q ss_pred cCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCC--CCHHH----HHHHHHhccCeeeehhHHhhcCch
Q psy5880 233 TGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGV--FSGKD----AFEKIKAGASLVQIYTSFVYHGPP 297 (328)
Q Consensus 233 ~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI--~s~~d----a~~~l~~GAd~V~vg~a~l~~gp~ 297 (328)
+ .++.++++.+..+ +||++.||+ .|.+| +.+++++||+.|.+||.++ +.++
T Consensus 166 -~----------~~~~~~~i~~~~~--~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~-~~~d 222 (235)
T cd00958 166 -G----------DAESFKEVVEGCP--VPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIF-QRPD 222 (235)
T ss_pred -C----------CHHHHHHHHhcCC--CCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhh-cCCC
Confidence 1 2466777877776 999999997 67766 7788999999999999997 4465
No 157
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.35 E-value=2.3e-05 Score=71.96 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEE-------eCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccc
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVK-------IAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEE 232 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vK-------l~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~ 232 (328)
..+.+++|.+.+.. .++|+++= +....+.+.+...++.+ .+.|+|+|-.+
T Consensus 124 ~~~~~~~v~~~~~~----~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a--~e~GAD~vKt~----------------- 180 (267)
T PRK07226 124 MLEDLGEVAEECEE----WGMPLLAMMYPRGPGIKNEYDPEVVAHAARVA--AELGADIVKTN----------------- 180 (267)
T ss_pred HHHHHHHHHHHHHH----cCCcEEEEEecCCCccCCCccHHHHHHHHHHH--HHHCCCEEeeC-----------------
Confidence 44455555555433 57898873 22334445566667777 88999999332
Q ss_pred cCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC--CHHHHHHHH----HhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 233 TGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF--SGKDAFEKI----KAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 233 ~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~--s~~da~~~l----~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+.| ..+.++++.+..+ +||+++|||+ |.+++.+++ ++||+.+.+|+.++. .++ +....+.+
T Consensus 181 ---~~~------~~~~l~~~~~~~~--ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~-~~~-p~~~~~~l 247 (267)
T PRK07226 181 ---YTG------DPESFREVVEGCP--VPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ-HED-PEAITRAI 247 (267)
T ss_pred ---CCC------CHHHHHHHHHhCC--CCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc-CCC-HHHHHHHH
Confidence 111 1355666665555 9999999999 899888886 899999999999974 465 44555555
Q ss_pred HHHHHHhCCCCHHH
Q psy5880 307 EELLQKEGYNSVSQ 320 (328)
Q Consensus 307 ~~~m~~~g~~si~e 320 (328)
...+. .|. |.+|
T Consensus 248 ~~~v~-~~~-~~~e 259 (267)
T PRK07226 248 SAVVH-EGA-SVEE 259 (267)
T ss_pred HHHHh-CCC-CHHH
Confidence 55543 222 5544
No 158
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.34 E-value=3.1e-06 Score=75.98 Aligned_cols=89 Identities=25% Similarity=0.266 Sum_probs=72.5
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+.|++.++++.-... +... +..++.++++++.++ +||++.|||++.+|
T Consensus 31 dp~~~a~~~--~~~g~~~i~i~dl~~~-------------~~~~-----~~n~~~~~~i~~~~~--~pv~~~ggi~~~~d 88 (232)
T TIGR03572 31 DPVNAARIY--NAKGADELIVLDIDAS-------------KRGR-----EPLFELISNLAEECF--MPLTVGGGIRSLED 88 (232)
T ss_pred CHHHHHHHH--HHcCCCEEEEEeCCCc-------------ccCC-----CCCHHHHHHHHHhCC--CCEEEECCCCCHHH
Confidence 578899999 8999999998764321 1111 234678888988887 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+.+++..||+.|.+|++++ ++|+++.++.+.
T Consensus 89 ~~~~~~~G~~~vilg~~~l-~~~~~~~~~~~~ 119 (232)
T TIGR03572 89 AKKLLSLGADKVSINTAAL-ENPDLIEEAARR 119 (232)
T ss_pred HHHHHHcCCCEEEEChhHh-cCHHHHHHHHHH
Confidence 9999999999999999997 579998888653
No 159
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.34 E-value=3.1e-06 Score=76.14 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=71.7
Q ss_pred hHHHHHHHhcccc-CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHH
Q psy5880 194 EKKDIADVVLDSK-CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK 272 (328)
Q Consensus 194 ~~~~~a~~l~~~~-~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~ 272 (328)
++.++|+.+ .+ .|++.+++..=... .. -.+.+++.++++.+.+. +||...|||+|.+
T Consensus 32 dp~~~a~~~--~~~~Ga~~l~ivDLd~a---------------~~---~~~~n~~~I~~i~~~~~--~pi~vGGGIrs~e 89 (234)
T PRK13587 32 SAEESIAYY--SQFECVNRIHIVDLIGA---------------KA---QHAREFDYIKSLRRLTT--KDIEVGGGIRTKS 89 (234)
T ss_pred CHHHHHHHH--HhccCCCEEEEEECccc---------------cc---CCcchHHHHHHHHhhcC--CeEEEcCCcCCHH
Confidence 356788888 77 79999988752111 11 12446788999998877 9999999999999
Q ss_pred HHHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 273 DAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 273 da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
|+.+++.+||+-|.+||..+ ++|++++++.+.
T Consensus 90 ~v~~~l~~Ga~kvvigt~a~-~~~~~l~~~~~~ 121 (234)
T PRK13587 90 QIMDYFAAGINYCIVGTKGI-QDTDWLKEMAHT 121 (234)
T ss_pred HHHHHHHCCCCEEEECchHh-cCHHHHHHHHHH
Confidence 99999999999999999997 569999988654
No 160
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.33 E-value=2.2e-05 Score=69.06 Aligned_cols=122 Identities=17% Similarity=0.153 Sum_probs=80.3
Q ss_pred HHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe-CCCCChhhHHHHHHHhcc
Q psy5880 126 VKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI-APDLSLDEKKDIADVVLD 204 (328)
Q Consensus 126 ~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl-~~~~~~~~~~~~a~~l~~ 204 (328)
++.+..++ +|++.+|..+|. ..+.++++.+++ .++++++-+ ++.. ..+-++.+
T Consensus 69 ~~~~~~~G--ad~i~vh~~~~~----------~~~~~~i~~~~~--------~g~~~~~~~~~~~t----~~~~~~~~-- 122 (206)
T TIGR03128 69 AEQAFAAG--ADIVTVLGVADD----------ATIKGAVKAAKK--------HGKEVQVDLINVKD----KVKRAKEL-- 122 (206)
T ss_pred HHHHHHcC--CCEEEEeccCCH----------HHHHHHHHHHHH--------cCCEEEEEecCCCC----hHHHHHHH--
Confidence 44455555 999998876532 124455555554 478998875 4432 23334555
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCe
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASL 284 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~ 284 (328)
.+.|+|++.+...+.+ ...+ +..++.++++++.++ ..++...||| +.+.+.+++++||+.
T Consensus 123 ~~~g~d~v~~~pg~~~--------------~~~~----~~~~~~i~~l~~~~~-~~~i~v~GGI-~~~n~~~~~~~Ga~~ 182 (206)
T TIGR03128 123 KELGADYIGVHTGLDE--------------QAKG----QNPFEDLQTILKLVK-EARVAVAGGI-NLDTIPDVIKLGPDI 182 (206)
T ss_pred HHcCCCEEEEcCCcCc--------------ccCC----CCCHHHHHHHHHhcC-CCcEEEECCc-CHHHHHHHHHcCCCE
Confidence 5779999866432211 0011 122466777877775 3667779999 899999999999999
Q ss_pred eeehhHHhh
Q psy5880 285 VQIYTSFVY 293 (328)
Q Consensus 285 V~vg~a~l~ 293 (328)
|.+||+++.
T Consensus 183 v~vGsai~~ 191 (206)
T TIGR03128 183 VIVGGAITK 191 (206)
T ss_pred EEEeehhcC
Confidence 999999863
No 161
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.33 E-value=2.5e-06 Score=74.61 Aligned_cols=68 Identities=28% Similarity=0.489 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCCccEE--EecCCCCHHHHHHHHHhccCeeeehhHHh------------------hcCchHHHHHHHHHH
Q psy5880 248 LISEMYKLTKGKLPII--GVGGVFSGKDAFEKIKAGASLVQIYTSFV------------------YHGPPLVTRIKSELE 307 (328)
Q Consensus 248 ~v~~i~~~~~~~ipvi--a~GGI~s~~da~~~l~~GAd~V~vg~a~l------------------~~gp~~~~~i~~~l~ 307 (328)
.++++++. +++||+ +.|||.||.|+.-++++|||.|.|||+++ |++|+.+.++.++|-
T Consensus 197 lv~~~~~~--grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~A~~~yddp~~laevs~~lg 274 (296)
T COG0214 197 LVKEVAKL--GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVEATTHYDDPEVLAEVSEGLG 274 (296)
T ss_pred HHHHHHHh--CCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHhc
Confidence 34444443 357875 89999999999999999999999999886 456677777777776
Q ss_pred HHHHHhCCCC
Q psy5880 308 ELLQKEGYNS 317 (328)
Q Consensus 308 ~~m~~~g~~s 317 (328)
+-|.-..+++
T Consensus 275 ~~M~Gi~i~~ 284 (296)
T COG0214 275 EAMKGIDISE 284 (296)
T ss_pred cccCCCChhh
Confidence 6655443333
No 162
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.31 E-value=1.5e-05 Score=74.21 Aligned_cols=154 Identities=15% Similarity=0.155 Sum_probs=95.7
Q ss_pred CcccccCCCCcCChhhHHHHHHHhHHHHHHHhhcCc-cceEEeccCCCCCcCc--cCCCchHHHHHHHHHHHHHhhhhcC
Q psy5880 20 GEWGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDV-AHYFVVNVSSPNTANL--RKLQAKDQLKHLLKTVVETRNQLAL 96 (328)
Q Consensus 20 ~~~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l~~~-~~~v~~n~sspN~~gl--~~~~~~~~L~~ll~~v~~~~~~~~~ 96 (328)
..+++++..+. .++|...++.+... +|++++|.+|||+.+. .-.++++.+.++++++++..
T Consensus 90 ~p~ivsi~g~~-----------~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~----- 153 (296)
T cd04740 90 TPVIASIAGST-----------VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT----- 153 (296)
T ss_pred CcEEEEEecCC-----------HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-----
Confidence 34777776443 25788888877666 8999999999998752 22356777888888888763
Q ss_pred CCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEE-ccCC-----CCCc--------chhhh-hhhHHHH
Q psy5880 97 KPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVV-NVSS-----PNTA--------NLRKL-QAKDQLK 161 (328)
Q Consensus 97 ~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~iei-N~sc-----Pn~~--------g~~~~-~~~~~~~ 161 (328)
..|+++|++++. +...++++.+..++ +|+|.+ |... +.+. +..+. .......
T Consensus 154 --~~Pv~vKl~~~~---------~~~~~~a~~~~~~G--~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~ 220 (296)
T cd04740 154 --DVPVIVKLTPNV---------TDIVEIARAAEEAG--ADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIAL 220 (296)
T ss_pred --CCCEEEEeCCCc---------hhHHHHHHHHHHcC--CCEEEEECCCcccccccccCceeecCCcceecCcccchHHH
Confidence 369999998763 24667777777776 898865 3221 1000 00000 0011234
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEec
Q psy5880 162 HLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 162 ~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
+.+..+++. .++||+. ..++.. ..++.+.+ ++|+|+|.+..
T Consensus 221 ~~i~~i~~~-------~~ipii~--~GGI~~--~~da~~~l---~~GAd~V~igr 261 (296)
T cd04740 221 RMVYQVYKA-------VEIPIIG--VGGIAS--GEDALEFL---MAGASAVQVGT 261 (296)
T ss_pred HHHHHHHHh-------cCCCEEE--ECCCCC--HHHHHHHH---HcCCCEEEEch
Confidence 555555554 5789875 333332 34555555 58999997654
No 163
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.28 E-value=8.5e-05 Score=66.58 Aligned_cols=132 Identities=20% Similarity=0.233 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcccccEEEEccC-CCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVS-SPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~s-cPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
..++++.+..++ +|++.+|+. +.. ....+.++.+++ .+.-+.+=+.+... .+.++
T Consensus 77 p~d~~~~~~~~g--ad~v~vH~~q~~~----------d~~~~~~~~i~~--------~g~~iGls~~~~t~----~~~~~ 132 (229)
T PLN02334 77 PEDYVPDFAKAG--ASIFTFHIEQAST----------IHLHRLIQQIKS--------AGMKAGVVLNPGTP----VEAVE 132 (229)
T ss_pred HHHHHHHHHHcC--CCEEEEeeccccc----------hhHHHHHHHHHH--------CCCeEEEEECCCCC----HHHHH
Confidence 356777777776 999998887 111 112344444443 23444555544333 23334
Q ss_pred HhccccCC-ccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 201 VVLDSKCK-VDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 201 ~l~~~~~G-~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
.+ .+.| +|+|.+..-.. |.++....+..++.++++++... ++||.+.||| +.+.+.++++
T Consensus 133 ~~--~~~~~~Dyi~~~~v~p---------------g~~~~~~~~~~~~~i~~~~~~~~-~~~I~a~GGI-~~e~i~~l~~ 193 (229)
T PLN02334 133 PV--VEKGLVDMVLVMSVEP---------------GFGGQSFIPSMMDKVRALRKKYP-ELDIEVDGGV-GPSTIDKAAE 193 (229)
T ss_pred HH--HhccCCCEEEEEEEec---------------CCCccccCHHHHHHHHHHHHhCC-CCcEEEeCCC-CHHHHHHHHH
Confidence 44 4453 99986542211 12333334567888899888754 4899999999 7999999999
Q ss_pred hccCeeeehhHHhhcCch
Q psy5880 280 AGASLVQIYTSFVYHGPP 297 (328)
Q Consensus 280 ~GAd~V~vg~a~l~~gp~ 297 (328)
+|||.|.+||+++. .++
T Consensus 194 aGad~vvvgsai~~-~~d 210 (229)
T PLN02334 194 AGANVIVAGSAVFG-APD 210 (229)
T ss_pred cCCCEEEEChHHhC-CCC
Confidence 99999999999873 344
No 164
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.27 E-value=2.4e-05 Score=68.85 Aligned_cols=119 Identities=19% Similarity=0.179 Sum_probs=74.9
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeC-CCCChhhHHHHHHHhccccCCccEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIA-PDLSLDEKKDIADVVLDSKCKVDGLI 213 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~-~~~~~~~~~~~a~~l~~~~~G~d~i~ 213 (328)
++|.+++.+.- +.-...+.+...+-+.++++.+ .++|+.+=+. ..++.+++...++.+ .++|+|+|-
T Consensus 82 GAdevdvv~~~----g~~~~~~~~~~~~ei~~v~~~~------~g~~lkvI~e~~~l~~~~i~~a~ria--~e~GaD~IK 149 (203)
T cd00959 82 GADEIDMVINI----GALKSGDYEAVYEEIAAVVEAC------GGAPLKVILETGLLTDEEIIKACEIA--IEAGADFIK 149 (203)
T ss_pred CCCEEEEeecH----HHHhCCCHHHHHHHHHHHHHhc------CCCeEEEEEecCCCCHHHHHHHHHHH--HHhCCCEEE
Confidence 49998864331 1111112233444445555542 2566655333 235667788899999 999999995
Q ss_pred EecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeee
Q psy5880 214 VSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286 (328)
Q Consensus 214 ~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~ 286 (328)
.+ |.+ .+.. ..++.++.+++.++.++||.++|||+|.+++.+++.+||+.++
T Consensus 150 Ts-TG~-----------------~~~~---at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 150 TS-TGF-----------------GPGG---ATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred cC-CCC-----------------CCCC---CCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 44 211 1111 2245555666665456999999999999999999999998764
No 165
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.25 E-value=6.2e-06 Score=75.31 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=72.2
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+.|++.+++..=... +... ..+++.++++.+.+. +||++.|||++.+|
T Consensus 31 dp~~~a~~~--~~~g~~~l~i~Dl~~~-------------~~~~-----~~n~~~i~~i~~~~~--~pv~~gGGi~s~~d 88 (258)
T PRK01033 31 DPINAVRIF--NEKEVDELIVLDIDAS-------------KRGS-----EPNYELIENLASECF--MPLCYGGGIKTLEQ 88 (258)
T ss_pred CHHHHHHHH--HHcCCCEEEEEECCCC-------------cCCC-----cccHHHHHHHHHhCC--CCEEECCCCCCHHH
Confidence 578899999 9999999988753211 1111 235788999988876 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+.+++.+||+.|.+|++++ ++|.++.++.+.
T Consensus 89 ~~~l~~~G~~~vvigs~~~-~~~~~~~~~~~~ 119 (258)
T PRK01033 89 AKKIFSLGVEKVSINTAAL-EDPDLITEAAER 119 (258)
T ss_pred HHHHHHCCCCEEEEChHHh-cCHHHHHHHHHH
Confidence 9999999999999999986 679988887654
No 166
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.23 E-value=7.6e-05 Score=65.78 Aligned_cols=146 Identities=16% Similarity=0.214 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+...+.++++.+.+ ...+|+-+..|+. .+.++.+++. ...++.+=...-++.++ +
T Consensus 22 ~~~~~~~~a~~~gG--i~~iEvt~~~~~~------------~~~i~~l~~~-------~~~~~~iGaGTV~~~~~----~ 76 (206)
T PRK09140 22 DEALAHVGALIEAG--FRAIEIPLNSPDP------------FDSIAALVKA-------LGDRALIGAGTVLSPEQ----V 76 (206)
T ss_pred HHHHHHHHHHHHCC--CCEEEEeCCCccH------------HHHHHHHHHH-------cCCCcEEeEEecCCHHH----H
Confidence 45556666665555 8999976654432 1244444433 22243333333345433 4
Q ss_pred HHhccccCCccEEEEecCCccchhhh------------ccc--c-ccccCC-CCC-CcCchHHHHHHHHHHHHcCCCccE
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYL------------DAR--Y-KEETGG-LSG-EPLRNKSTELISEMYKLTKGKLPI 262 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~------------~~~--~-~~~~gg-~sg-~~~~~~~l~~v~~i~~~~~~~ipv 262 (328)
+.+ .++|+++++..+......+.. .+. . ....|. +-+ .+..+.++++++.+++.++.++|+
T Consensus 77 ~~a--~~aGA~fivsp~~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~~~ipv 154 (206)
T PRK09140 77 DRL--ADAGGRLIVTPNTDPEVIRRAVALGMVVMPGVATPTEAFAALRAGAQALKLFPASQLGPAGIKALRAVLPPDVPV 154 (206)
T ss_pred HHH--HHcCCCEEECCCCCHHHHHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhhcCCCCeE
Confidence 556 789999997755432210000 000 0 000010 000 011234577888888877435999
Q ss_pred EEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 263 IGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 263 ia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
++.||| +.+.+.+++++||+.|.++|+++.
T Consensus 155 vaiGGI-~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 155 FAVGGV-TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred EEECCC-CHHHHHHHHHCCCeEEEEehHhcc
Confidence 999999 899999999999999999999974
No 167
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.23 E-value=6.8e-06 Score=74.12 Aligned_cols=90 Identities=21% Similarity=0.319 Sum_probs=71.2
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+.|++.+++..-... ..+ .....+.++++.+.++ +|++..|||++.+|
T Consensus 33 ~~~e~a~~~--~~~G~~~l~i~dl~~~---------------~~~---~~~~~~~i~~i~~~~~--~~l~v~GGi~~~~~ 90 (241)
T PRK13585 33 DPVEVAKRW--VDAGAETLHLVDLDGA---------------FEG---ERKNAEAIEKIIEAVG--VPVQLGGGIRSAED 90 (241)
T ss_pred CHHHHHHHH--HHcCCCEEEEEechhh---------------hcC---CcccHHHHHHHHHHcC--CcEEEcCCcCCHHH
Confidence 477889999 8999999987643211 111 1223577888888877 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+..++.+||+.|.+|+..+ ++|+++.++.+..
T Consensus 91 ~~~~~~~Ga~~v~iGs~~~-~~~~~~~~i~~~~ 122 (241)
T PRK13585 91 AASLLDLGVDRVILGTAAV-ENPEIVRELSEEF 122 (241)
T ss_pred HHHHHHcCCCEEEEChHHh-hChHHHHHHHHHh
Confidence 9999999999999999997 4698888886654
No 168
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.22 E-value=5.3e-06 Score=80.00 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=51.5
Q ss_pred ccCC-ccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc------CCCccEEEecCCCCHHHHHHH
Q psy5880 205 SKCK-VDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT------KGKLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 205 ~~~G-~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~------~~~ipvia~GGI~s~~da~~~ 277 (328)
.+.| +|.|++- . +.||+.|......-+..+.++++.+ ..++||++.|||.|++++..+
T Consensus 173 ~~~g~aD~Ivvq-~--------------EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA 237 (418)
T cd04742 173 RRVPVADDITVE-A--------------DSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAA 237 (418)
T ss_pred HhCCCCCEEEEc-c--------------cCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHH
Confidence 4445 6888775 2 1256654321112244555555544 124999999999999999999
Q ss_pred HHhccCeeeehhHHhh
Q psy5880 278 IKAGASLVQIYTSFVY 293 (328)
Q Consensus 278 l~~GAd~V~vg~a~l~ 293 (328)
+.+||++|++||.++.
T Consensus 238 ~alGAd~V~~GT~fla 253 (418)
T cd04742 238 FALGADFIVTGSINQC 253 (418)
T ss_pred HHcCCcEEeeccHHHh
Confidence 9999999999999984
No 169
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.21 E-value=4.5e-06 Score=74.88 Aligned_cols=89 Identities=29% Similarity=0.363 Sum_probs=71.0
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++|+.+ .+.|++.+++..=... ..| .+.+++.++++.+.+. +||...|||++.+|
T Consensus 30 dP~~~a~~~--~~~g~~~l~ivDLdaa---------------~~g---~~~n~~~i~~i~~~~~--~~i~vgGGIrs~ed 87 (229)
T PF00977_consen 30 DPVEVAKAF--NEQGADELHIVDLDAA---------------KEG---RGSNLELIKEIAKETG--IPIQVGGGIRSIED 87 (229)
T ss_dssp CHHHHHHHH--HHTT-SEEEEEEHHHH---------------CCT---HHHHHHHHHHHHHHSS--SEEEEESSE-SHHH
T ss_pred CHHHHHHHH--HHcCCCEEEEEEccCc---------------ccC---chhHHHHHHHHHhcCC--ccEEEeCccCcHHH
Confidence 478899999 8999999988752110 111 3457889999999987 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+.+++.+||+-|.+||..+ ++|+++.++.+.
T Consensus 88 ~~~ll~~Ga~~Vvigt~~~-~~~~~l~~~~~~ 118 (229)
T PF00977_consen 88 AERLLDAGADRVVIGTEAL-EDPELLEELAER 118 (229)
T ss_dssp HHHHHHTT-SEEEESHHHH-HCCHHHHHHHHH
T ss_pred HHHHHHhCCCEEEeChHHh-hchhHHHHHHHH
Confidence 9999999999999999997 569999888654
No 170
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=98.21 E-value=0.00033 Score=62.79 Aligned_cols=147 Identities=20% Similarity=0.194 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
....+++.+..++ +|.+.+|..++. ..+.+.++.+++. +.-+.+-+.+..+.+++..+
T Consensus 76 ~p~~~i~~~~~~G--ad~itvH~ea~~----------~~~~~~l~~ik~~--------G~~~gval~p~t~~e~l~~~-- 133 (228)
T PTZ00170 76 NPEKWVDDFAKAG--ASQFTFHIEATE----------DDPKAVARKIREA--------GMKVGVAIKPKTPVEVLFPL-- 133 (228)
T ss_pred CHHHHHHHHHHcC--CCEEEEeccCCc----------hHHHHHHHHHHHC--------CCeEEEEECCCCCHHHHHHH--
Confidence 3566667777776 999998876421 1145566666653 45567777777665444433
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
+ ....+|.|.+-... -|+.|-...+..++.++++++..+ +..|...|||+ .+.+.++.++
T Consensus 134 -l--~~~~vD~Vl~m~v~---------------pG~~gq~~~~~~~~ki~~~~~~~~-~~~I~VdGGI~-~~ti~~~~~a 193 (228)
T PTZ00170 134 -I--DTDLVDMVLVMTVE---------------PGFGGQSFMHDMMPKVRELRKRYP-HLNIQVDGGIN-LETIDIAADA 193 (228)
T ss_pred -H--ccchhhhHHhhhcc---------------cCCCCcEecHHHHHHHHHHHHhcc-cCeEEECCCCC-HHHHHHHHHc
Confidence 3 22335665431111 123333334566788888888765 47888999995 5788899999
Q ss_pred ccCeeeehhHHhhcCchHHHHHHHHHHHHHH
Q psy5880 281 GASLVQIYTSFVYHGPPLVTRIKSELEELLQ 311 (328)
Q Consensus 281 GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~ 311 (328)
|||.+.+||++. +.++. .+..+.+.+.++
T Consensus 194 Gad~iVvGsaI~-~a~d~-~~~~~~i~~~~~ 222 (228)
T PTZ00170 194 GANVIVAGSSIF-KAKDR-KQAIELLRESVQ 222 (228)
T ss_pred CCCEEEEchHHh-CCCCH-HHHHHHHHHHHH
Confidence 999999999986 34553 333344444443
No 171
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.19 E-value=8.4e-06 Score=72.99 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=69.4
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+. ++.+++..... -..|. +.+++.++++.+.+. +||++.|||+|.+|
T Consensus 31 dp~~~a~~~--~~~-~~~l~ivDldg---------------a~~g~---~~n~~~i~~i~~~~~--~pv~~gGGIrs~ed 87 (228)
T PRK04128 31 DPVEIALRF--SEY-VDKIHVVDLDG---------------AFEGK---PKNLDVVKNIIRETG--LKVQVGGGLRTYES 87 (228)
T ss_pred CHHHHHHHH--HHh-CCEEEEEECcc---------------hhcCC---cchHHHHHHHHhhCC--CCEEEcCCCCCHHH
Confidence 467888888 777 99988854321 12232 235788899988876 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+.+++.+||+.|.+||+.+ +|++++++.+.
T Consensus 88 v~~l~~~G~~~vivGtaa~--~~~~l~~~~~~ 117 (228)
T PRK04128 88 IKDAYEIGVENVIIGTKAF--DLEFLEKVTSE 117 (228)
T ss_pred HHHHHHCCCCEEEECchhc--CHHHHHHHHHH
Confidence 9999999999999999997 59999888653
No 172
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.19 E-value=9.9e-06 Score=71.71 Aligned_cols=86 Identities=21% Similarity=0.232 Sum_probs=65.4
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc-CCCccEEEecCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT-KGKLPIIGVGGV 268 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-~~~ipvia~GGI 268 (328)
.+.++....|.+. +..|...+.+- +||.. ...+.++++++.+ + +|++..|||
T Consensus 132 ~~~e~~~ayA~aa--e~~g~~ivyLe--------------------~SG~~---~~~e~I~~v~~~~~~--~pl~vGGGI 184 (219)
T cd02812 132 LKPEDAAAYALAA--EYLGMPIVYLE--------------------YSGAY---GPPEVVRAVKKVLGD--TPLIVGGGI 184 (219)
T ss_pred CCHHHHHHHHHHH--HHcCCeEEEeC--------------------CCCCc---CCHHHHHHHHHhcCC--CCEEEeCCC
Confidence 4556666777777 77775444332 12222 2357889999887 5 999999999
Q ss_pred CCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 269 FSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 269 ~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
+|++++.+++.+|||.|.+|+++. ++|+++.++.
T Consensus 185 rs~e~a~~l~~aGAD~VVVGsai~-~~p~~~~~~v 218 (219)
T cd02812 185 RSGEQAKEMAEAGADTIVVGNIVE-EDPNAALETV 218 (219)
T ss_pred CCHHHHHHHHHcCCCEEEECchhh-CCHHHHHHHh
Confidence 999999999999999999999997 6688887764
No 173
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.18 E-value=1.2e-05 Score=72.08 Aligned_cols=90 Identities=21% Similarity=0.223 Sum_probs=71.8
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+.|++.+++..-... ..| .+.++++++++++.++ +|+...|||++.+|
T Consensus 29 dp~~~a~~~--~~~g~~~l~v~dl~~~---------------~~g---~~~~~~~i~~i~~~~~--~pi~~ggGI~~~ed 86 (230)
T TIGR00007 29 DPVEAAKKW--EEEGAERIHVVDLDGA---------------KEG---GPVNLPVIKKIVRETG--VPVQVGGGIRSLED 86 (230)
T ss_pred CHHHHHHHH--HHcCCCEEEEEeCCcc---------------ccC---CCCcHHHHHHHHHhcC--CCEEEeCCcCCHHH
Confidence 478899999 9999999988642111 111 1234688899988886 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+.+++.+||+.|.+++.++ ++|+++.++.+.+
T Consensus 87 ~~~~~~~Ga~~vvlgs~~l-~d~~~~~~~~~~~ 118 (230)
T TIGR00007 87 VEKLLDLGVDRVIIGTAAV-ENPDLVKELLKEY 118 (230)
T ss_pred HHHHHHcCCCEEEEChHHh-hCHHHHHHHHHHh
Confidence 9999999999999999997 5688877776654
No 174
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.17 E-value=1.2e-05 Score=71.48 Aligned_cols=78 Identities=23% Similarity=0.353 Sum_probs=66.1
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+.|+..|.++.-... |-++|+. .+.++++.+.++ +||+++|||+|-+|
T Consensus 148 ~~~~l~~~~--~~~g~~~ii~TdI~~D-------------Gtl~G~n-----~~l~~~l~~~~~--ipviaSGGv~s~~D 205 (241)
T COG0106 148 ELEELAKRL--EEVGLAHILYTDISRD-------------GTLSGPN-----VDLVKELAEAVD--IPVIASGGVSSLDD 205 (241)
T ss_pred CHHHHHHHH--HhcCCCeEEEEecccc-------------cccCCCC-----HHHHHHHHHHhC--cCEEEecCcCCHHH
Confidence 478899999 9999999988764432 4467753 577888888886 99999999999999
Q ss_pred HHHHHHh-ccCeeeehhHHhh
Q psy5880 274 AFEKIKA-GASLVQIYTSFVY 293 (328)
Q Consensus 274 a~~~l~~-GAd~V~vg~a~l~ 293 (328)
+..+-.. |...|.+|+|++.
T Consensus 206 i~~l~~~~G~~GvIvG~ALy~ 226 (241)
T COG0106 206 IKALKELSGVEGVIVGRALYE 226 (241)
T ss_pred HHHHHhcCCCcEEEEehHHhc
Confidence 9999998 8999999999963
No 175
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=98.15 E-value=9e-06 Score=78.94 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=43.6
Q ss_pred CCCCCCcCchHHHHHHHHHHHHc------CCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 234 GGLSGEPLRNKSTELISEMYKLT------KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 234 gg~sg~~~~~~~l~~v~~i~~~~------~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
||+.|......-+..+.++++.+ ...+||++.|||.|++++..++.+||++|++||.++.
T Consensus 193 GGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fla 258 (444)
T TIGR02814 193 GGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQC 258 (444)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHh
Confidence 66654321112234454444554 1249999999999999999999999999999999984
No 176
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.14 E-value=9.1e-06 Score=72.86 Aligned_cols=77 Identities=25% Similarity=0.382 Sum_probs=60.8
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+.|+..+.+++-... |-..|+ .++.++++++.++ +|+|++|||++.+|
T Consensus 148 ~~~~~~~~~--~~~g~~~ii~tdi~~d-------------Gt~~G~-----d~~~~~~l~~~~~--~~viasGGv~~~~D 205 (229)
T PF00977_consen 148 DLEEFAKRL--EELGAGEIILTDIDRD-------------GTMQGP-----DLELLKQLAEAVN--IPVIASGGVRSLED 205 (229)
T ss_dssp EHHHHHHHH--HHTT-SEEEEEETTTT-------------TTSSS-------HHHHHHHHHHHS--SEEEEESS--SHHH
T ss_pred CHHHHHHHH--HhcCCcEEEEeecccc-------------CCcCCC-----CHHHHHHHHHHcC--CCEEEecCCCCHHH
Confidence 478899999 8999999987753322 445554 3578888988886 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHh
Q psy5880 274 AFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l 292 (328)
+.++...|+++|.+|++++
T Consensus 206 l~~l~~~G~~gvivg~al~ 224 (229)
T PF00977_consen 206 LRELKKAGIDGVIVGSALH 224 (229)
T ss_dssp HHHHHHTTECEEEESHHHH
T ss_pred HHHHHHCCCcEEEEehHhh
Confidence 9999999999999999995
No 177
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.14 E-value=1.1e-05 Score=71.81 Aligned_cols=76 Identities=24% Similarity=0.348 Sum_probs=58.4
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
...++.+.+ .+.|+ ++.+++-... |-..|+ .+++++++++.++ +|||++|||+|.+|
T Consensus 142 ~~~~~~~~~--~~~g~-~ii~tdI~~d-------------Gt~~G~-----d~eli~~i~~~~~--~pvia~GGi~s~ed 198 (221)
T TIGR00734 142 SLEEVRDFL--NSFDY-GLIVLDIHSV-------------GTMKGP-----NLELLTKTLELSE--HPVMLGGGISGVED 198 (221)
T ss_pred cHHHHHHHH--HhcCC-EEEEEECCcc-------------ccCCCC-----CHHHHHHHHhhCC--CCEEEeCCCCCHHH
Confidence 356677777 67888 6655432111 223343 3688899998876 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHh
Q psy5880 274 AFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l 292 (328)
+.++...||++|.+|++++
T Consensus 199 ~~~l~~~Ga~~vivgsal~ 217 (221)
T TIGR00734 199 LELLKEMGVSAVLVATAVH 217 (221)
T ss_pred HHHHHHCCCCEEEEhHHhh
Confidence 9998889999999999996
No 178
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.13 E-value=7.3e-05 Score=65.97 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCc
Q psy5880 161 KHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEP 240 (328)
Q Consensus 161 ~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~ 240 (328)
.+.+++.+..++ ..+-|+.-++++ .-+|++| +++|+..+.--+...+ ||..
T Consensus 110 ~etl~Aae~Lv~-----eGF~VlPY~~~D------~v~akrL--~d~GcaavMPlgsPIG----------------Sg~G 160 (247)
T PF05690_consen 110 IETLKAAEILVK-----EGFVVLPYCTDD------PVLAKRL--EDAGCAAVMPLGSPIG----------------SGRG 160 (247)
T ss_dssp HHHHHHHHHHHH-----TT-EEEEEE-S-------HHHHHHH--HHTT-SEBEEBSSSTT----------------T---
T ss_pred hHHHHHHHHHHH-----CCCEEeecCCCC------HHHHHHH--HHCCCCEEEecccccc----------------cCcC
Confidence 344455444433 467777776664 3578999 9999999864433221 1222
Q ss_pred CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh-cCch
Q psy5880 241 LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY-HGPP 297 (328)
Q Consensus 241 ~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~-~gp~ 297 (328)
+. +...++.+++..+ +|||.-+||.++.|+.++++.|||+|.+-|++.. .+|-
T Consensus 161 i~--n~~~l~~i~~~~~--vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv 214 (247)
T PF05690_consen 161 IQ--NPYNLRIIIERAD--VPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPV 214 (247)
T ss_dssp SS--THHHHHHHHHHGS--SSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHH
T ss_pred CC--CHHHHHHHHHhcC--CcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHH
Confidence 22 2256777788876 9999999999999999999999999999999852 3453
No 179
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.12 E-value=1.1e-05 Score=72.75 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=64.3
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+.|+..|.+++-... |..+|+ .+++++++++..+ +|||++|||++.+|
T Consensus 145 ~~~e~~~~~--~~~g~~~ii~tdI~rd-------------Gt~~G~-----d~el~~~l~~~~~--~pviasGGv~s~~D 202 (241)
T PRK14114 145 DPVSLLKRL--KEYGLEEIVHTEIEKD-------------GTLQEH-----DFSLTRKIAIEAE--VKVFAAGGISSENS 202 (241)
T ss_pred CHHHHHHHH--HhcCCCEEEEEeechh-------------hcCCCc-----CHHHHHHHHHHCC--CCEEEECCCCCHHH
Confidence 367889999 9999999987753221 445564 3578888888876 99999999999999
Q ss_pred HHHHHHh-----c-cCeeeehhHHhhcCc
Q psy5880 274 AFEKIKA-----G-ASLVQIYTSFVYHGP 296 (328)
Q Consensus 274 a~~~l~~-----G-Ad~V~vg~a~l~~gp 296 (328)
+.++... | ++.|.+|++++ +|-
T Consensus 203 l~~l~~~~~~~~g~v~gvivg~Al~-~g~ 230 (241)
T PRK14114 203 LKTAQRVHRETNGLLKGVIVGRAFL-EGI 230 (241)
T ss_pred HHHHHhcccccCCcEEEEEEehHHH-CCC
Confidence 9999886 6 99999999995 443
No 180
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.12 E-value=1.9e-05 Score=70.89 Aligned_cols=89 Identities=17% Similarity=0.085 Sum_probs=70.7
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++|+.+ .+.|++.+++..=.. ..| .+.+.+.++++.+... .|+-..|||+|.+|
T Consensus 31 dP~~~a~~~--~~~ga~~lhivDLd~----------------a~~---~~~n~~~i~~i~~~~~--~~v~vGGGIrs~e~ 87 (232)
T PRK13586 31 NPIEIASKL--YNEGYTRIHVVDLDA----------------AEG---VGNNEMYIKEISKIGF--DWIQVGGGIRDIEK 87 (232)
T ss_pred CHHHHHHHH--HHCCCCEEEEEECCC----------------cCC---CcchHHHHHHHHhhCC--CCEEEeCCcCCHHH
Confidence 478899999 899999998875211 011 1234688888887543 59999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+.+++..||+-|.+||..+ ++|++++++.+..
T Consensus 88 ~~~~l~~Ga~kvvigt~a~-~~p~~~~~~~~~~ 119 (232)
T PRK13586 88 AKRLLSLDVNALVFSTIVF-TNFNLFHDIVREI 119 (232)
T ss_pred HHHHHHCCCCEEEECchhh-CCHHHHHHHHHHh
Confidence 9999999999999999997 5799998886554
No 181
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.11 E-value=0.00017 Score=65.86 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEeC------CCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCC
Q psy5880 162 HLLKTVVETRNQLAVKPLPPILVKIA------PDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG 235 (328)
Q Consensus 162 ~i~~~v~~~~~~~~~~~~~Pv~vKl~------~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg 235 (328)
+.+.+|++.++. .++|+++.+- +..+.+.+...++.+ .++|+|+|-+. +
T Consensus 123 ~~~~~i~~~~~~----~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a--~~~GADyikt~---~---------------- 177 (258)
T TIGR01949 123 RDLGMIAEICDD----WGVPLLAMMYPRGPHIDDRDPELVAHAARLG--AELGADIVKTP---Y---------------- 177 (258)
T ss_pred HHHHHHHHHHHH----cCCCEEEEEeccCcccccccHHHHHHHHHHH--HHHCCCEEecc---C----------------
Confidence 566667766543 5789988543 223334455556777 78999999532 1
Q ss_pred CCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC--CHHHHHH----HHHhccCeeeehhHHhhcCchHHHHHHHHHHHH
Q psy5880 236 LSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF--SGKDAFE----KIKAGASLVQIYTSFVYHGPPLVTRIKSELEEL 309 (328)
Q Consensus 236 ~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~--s~~da~~----~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~ 309 (328)
.+ .++.++++.+..+ +||++.|||+ |.+++.+ ++++||+.+.++++++. .++ +....+.+...
T Consensus 178 -~~------~~~~l~~~~~~~~--iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~-~~d-p~~~~~~l~~~ 246 (258)
T TIGR01949 178 -TG------DIDSFRDVVKGCP--APVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ-HDD-PVGITKAVCKI 246 (258)
T ss_pred -CC------CHHHHHHHHHhCC--CcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc-CCC-HHHHHHHHHHH
Confidence 01 2466777777666 9999999999 6555554 45899999999999974 455 33333334443
No 182
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.09 E-value=1.5e-05 Score=72.16 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=69.6
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++|+.. .+.|++.+|+..= +| | .+.+.+.++++++ ++ +||-..|||++ ++
T Consensus 44 dP~~~A~~~--~~~Ga~~lHvVDL----------------dg--g---~~~n~~~i~~i~~-~~--~~vqvGGGIR~-e~ 96 (262)
T PLN02446 44 SAAEFAEMY--KRDGLTGGHVIML----------------GA--D---DASLAAALEALRA-YP--GGLQVGGGVNS-EN 96 (262)
T ss_pred CHHHHHHHH--HHCCCCEEEEEEC----------------CC--C---CcccHHHHHHHHh-CC--CCEEEeCCccH-HH
Confidence 478899999 9999999998741 11 1 1234678888888 76 99999999997 99
Q ss_pred HHHHHHhccCeeeehhHHhhcC----chHHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHG----PPLVTRIKSEL 306 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~g----p~~~~~i~~~l 306 (328)
+.+++.+||+-|.+||.++. + |++++++.+..
T Consensus 97 i~~~l~~Ga~rViigT~Av~-~~~~~p~~v~~~~~~~ 132 (262)
T PLN02446 97 AMSYLDAGASHVIVTSYVFR-DGQIDLERLKDLVRLV 132 (262)
T ss_pred HHHHHHcCCCEEEEchHHHh-CCCCCHHHHHHHHHHh
Confidence 99999999999999999974 6 89988886543
No 183
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.09 E-value=1.3e-05 Score=72.01 Aligned_cols=88 Identities=25% Similarity=0.238 Sum_probs=71.1
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++|+.+ .+.|++.+++..=.. ..| .+.+++.++++.+.+. +|+...|||++.+|
T Consensus 36 dp~~~a~~~--~~~g~~~l~i~DLd~----------------~~~---~~~n~~~i~~i~~~~~--~~v~vgGGir~~ed 92 (233)
T cd04723 36 DPLDVARAY--KELGFRGLYIADLDA----------------IMG---RGDNDEAIRELAAAWP--LGLWVDGGIRSLEN 92 (233)
T ss_pred CHHHHHHHH--HHCCCCEEEEEeCcc----------------ccC---CCccHHHHHHHHHhCC--CCEEEecCcCCHHH
Confidence 578899999 899999999875221 011 2345788999988887 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+.+++.+||+-|.+||..+ ++ ++++++.+..
T Consensus 93 v~~~l~~Ga~~viigt~~~-~~-~~~~~~~~~~ 123 (233)
T cd04723 93 AQEWLKRGASRVIVGTETL-PS-DDDEDRLAAL 123 (233)
T ss_pred HHHHHHcCCCeEEEcceec-cc-hHHHHHHHhc
Confidence 9999999999999999986 56 8877776544
No 184
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=98.09 E-value=0.0014 Score=58.59 Aligned_cols=127 Identities=18% Similarity=0.241 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcccccEEEEccC-CCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVS-SPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~s-cPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
...|++....++ +|.|.+|.- |+. .+..+++.||+. ++-..+-+.|..+.+.+..++.
T Consensus 71 P~~~i~~~~~aG--ad~it~H~Ea~~~-----------~~~~~i~~Ik~~--------G~kaGlalnP~T~~~~l~~~l~ 129 (229)
T PRK09722 71 PQDYIDQLADAG--ADFITLHPETING-----------QAFRLIDEIRRA--------GMKVGLVLNPETPVESIKYYIH 129 (229)
T ss_pred HHHHHHHHHHcC--CCEEEECccCCcc-----------hHHHHHHHHHHc--------CCCEEEEeCCCCCHHHHHHHHH
Confidence 456666666666 999998875 221 134566666663 5667888888877555544444
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC---CccEEEecCCCCHHHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG---KLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~---~ipvia~GGI~s~~da~~~ 277 (328)
. +|.|.+-... -|++|-...|..++.++++|+..+. ++.|-.-|||+ .+-+.++
T Consensus 130 ~-------vD~VLvMsV~---------------PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~ 186 (229)
T PRK09722 130 L-------LDKITVMTVD---------------PGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKL 186 (229)
T ss_pred h-------cCEEEEEEEc---------------CCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHH
Confidence 3 5777654322 2356666677888888888876531 36689999997 7788899
Q ss_pred HHhccCeeeehhH-Hh
Q psy5880 278 IKAGASLVQIYTS-FV 292 (328)
Q Consensus 278 l~~GAd~V~vg~a-~l 292 (328)
.++|||.+.+||+ ++
T Consensus 187 ~~aGad~~V~Gss~iF 202 (229)
T PRK09722 187 MEAGADVFIVGTSGLF 202 (229)
T ss_pred HHcCCCEEEEChHHHc
Confidence 9999999999975 54
No 185
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.09 E-value=1.9e-05 Score=71.27 Aligned_cols=81 Identities=22% Similarity=0.149 Sum_probs=67.2
Q ss_pred HHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHH
Q psy5880 196 KDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAF 275 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~ 275 (328)
.++|+.. .++|++.+|+.. + |+ + +.+.++++.+.++ +||...|||++ +++.
T Consensus 41 ~~~A~~~--~~~Ga~~lHvVD-------------------L-g~---~-n~~~i~~i~~~~~--~~v~vGGGIr~-e~v~ 91 (253)
T TIGR02129 41 SYYAKLY--KDDGVKGCHVIM-------------------L-GP---N-NDDAAKEALHAYP--GGLQVGGGIND-TNAQ 91 (253)
T ss_pred HHHHHHH--HHcCCCEEEEEE-------------------C-CC---C-cHHHHHHHHHhCC--CCEEEeCCcCH-HHHH
Confidence 7889999 999999999885 2 22 2 4688899988887 99999999998 9999
Q ss_pred HHHHhccCeeeehhHHhhc---CchHHHHHHHH
Q psy5880 276 EKIKAGASLVQIYTSFVYH---GPPLVTRIKSE 305 (328)
Q Consensus 276 ~~l~~GAd~V~vg~a~l~~---gp~~~~~i~~~ 305 (328)
+++.+||+.|.+||+++.+ .|++++++.+.
T Consensus 92 ~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~ 124 (253)
T TIGR02129 92 EWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSL 124 (253)
T ss_pred HHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHH
Confidence 9999999999999999743 26677776554
No 186
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=98.08 E-value=2.7e-05 Score=70.36 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCEEEEe---CCCCChhh-HHHHHHHhccccCCccEEEEecCCccchhhhcccccccc
Q psy5880 158 DQLKHLLKTVVETRNQLAVKPLPPILVKI---APDLSLDE-KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEET 233 (328)
Q Consensus 158 ~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl---~~~~~~~~-~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~ 233 (328)
+.+.+-+++|++.+ .. ++.+|+ ++.++.++ +..+++.+ .++|+|+|--+.+ +
T Consensus 115 ~~v~~ei~~v~~~~------~~-~~~lKVIlEt~~L~~ee~i~~a~~~a--~~aGADFVKTSTG-f-------------- 170 (257)
T PRK05283 115 QVGFELVKACKEAC------AA-NVLLKVIIETGELKDEALIRKASEIA--IKAGADFIKTSTG-K-------------- 170 (257)
T ss_pred HHHHHHHHHHHHHh------CC-CceEEEEEeccccCCHHHHHHHHHHH--HHhCCCEEEcCCC-C--------------
Confidence 45556666666653 11 345554 34577764 78889999 9999999954332 1
Q ss_pred CCCCCCcCchHHHHHHHHHHHHc-----CCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHH
Q psy5880 234 GGLSGEPLRNKSTELISEMYKLT-----KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLV 299 (328)
Q Consensus 234 gg~sg~~~~~~~l~~v~~i~~~~-----~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~ 299 (328)
.+..-. .+.++.+++.+ ++++.|-++|||+|.+++.+++.+|.+.. |.-++ + |.||
T Consensus 171 ---~~~gAt---~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~l--g~~~~-~-~~~f 231 (257)
T PRK05283 171 ---VPVNAT---LEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEIL--GADWA-D-ARHF 231 (257)
T ss_pred ---CCCCCC---HHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHHh--Chhhc-C-cccE
Confidence 111122 34445555543 34689999999999999999999997754 55544 2 5553
No 187
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.07 E-value=4.7e-05 Score=69.04 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
...+++......+ +++|-+..- |.. ..--.+.++.|++. .++|+..|==. ++ ..++.+
T Consensus 69 d~~~~a~~y~~~G--A~aiSVlTe-~~~--------F~Gs~~dL~~v~~~-------~~~PvL~KDFI-id---~~QI~e 126 (254)
T PF00218_consen 69 DPAEIAKAYEEAG--AAAISVLTE-PKF--------FGGSLEDLRAVRKA-------VDLPVLRKDFI-ID---PYQIYE 126 (254)
T ss_dssp SHHHHHHHHHHTT---SEEEEE---SCC--------CHHHHHHHHHHHHH-------SSS-EEEES----S---HHHHHH
T ss_pred CHHHHHHHHHhcC--CCEEEEECC-CCC--------CCCCHHHHHHHHHH-------hCCCcccccCC-CC---HHHHHH
Confidence 5677777777776 889876332 111 11123445556655 68999998100 11 234433
Q ss_pred HhccccCCccEEEEecCCccchh-----------hhcc--------c------cccccCCCCCC--cCchHHHHHHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYE-----------YLDA--------R------YKEETGGLSGE--PLRNKSTELISEMY 253 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~-----------~~~~--------~------~~~~~gg~sg~--~~~~~~l~~v~~i~ 253 (328)
. ..+|+|+|.++-....... +..+ . .....=|+... ......+....++.
T Consensus 127 A---~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~ 203 (254)
T PF00218_consen 127 A---RAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELA 203 (254)
T ss_dssp H---HHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHH
T ss_pred H---HHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHH
Confidence 2 4678888777655433100 0000 0 00000011111 11123456667777
Q ss_pred HHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHH
Q psy5880 254 KLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 254 ~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i 302 (328)
..++.++.+|+-+||++++|+..+..+|+|+|.||+++|. .++.-+.+
T Consensus 204 ~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~-~~d~~~~~ 251 (254)
T PF00218_consen 204 PLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMR-SPDPGEAL 251 (254)
T ss_dssp CHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHT-SSSHHHHH
T ss_pred hhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhC-CCCHHHHH
Confidence 7777779999999999999999999999999999999995 46654443
No 188
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.06 E-value=0.00015 Score=63.40 Aligned_cols=127 Identities=20% Similarity=0.157 Sum_probs=81.3
Q ss_pred HHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEE-eCCCCChhhHHHHHHHh
Q psy5880 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVK-IAPDLSLDEKKDIADVV 202 (328)
Q Consensus 124 ~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vK-l~~~~~~~~~~~~a~~l 202 (328)
.+++.+..++ +|++.+|...+ ++...++++.+++ .++++++= +++. +. .+..+ +
T Consensus 68 ~~~~~~~~aG--ad~i~~h~~~~----------~~~~~~~i~~~~~--------~g~~~~v~~~~~~-t~---~e~~~-~ 122 (202)
T cd04726 68 LEAEMAFKAG--ADIVTVLGAAP----------LSTIKKAVKAAKK--------YGKEVQVDLIGVE-DP---EKRAK-L 122 (202)
T ss_pred HHHHHHHhcC--CCEEEEEeeCC----------HHHHHHHHHHHHH--------cCCeEEEEEeCCC-CH---HHHHH-H
Confidence 3456666666 99999876531 1224556666554 36777775 4444 32 33334 5
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhcc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGA 282 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GA 282 (328)
.+.|+|++.++-... ++..|. +...+.++++++..+ +|+++.|||+ ++.+.+++++||
T Consensus 123 --~~~~~d~v~~~~~~~--------------~~~~~~---~~~~~~i~~~~~~~~--~~i~~~GGI~-~~~i~~~~~~Ga 180 (202)
T cd04726 123 --LKLGVDIVILHRGID--------------AQAAGG---WWPEDDLKKVKKLLG--VKVAVAGGIT-PDTLPEFKKAGA 180 (202)
T ss_pred --HHCCCCEEEEcCccc--------------ccccCC---CCCHHHHHHHHhhcC--CCEEEECCcC-HHHHHHHHhcCC
Confidence 578999886632110 111111 123466777776544 9999999995 999999999999
Q ss_pred CeeeehhHHhhcCchH
Q psy5880 283 SLVQIYTSFVYHGPPL 298 (328)
Q Consensus 283 d~V~vg~a~l~~gp~~ 298 (328)
|.|.+||+++ +..++
T Consensus 181 d~vvvGsai~-~~~d~ 195 (202)
T cd04726 181 DIVIVGRAIT-GAADP 195 (202)
T ss_pred CEEEEeehhc-CCCCH
Confidence 9999999986 33443
No 189
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.04 E-value=9.3e-05 Score=66.04 Aligned_cols=100 Identities=19% Similarity=0.163 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCc
Q psy5880 161 KHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEP 240 (328)
Q Consensus 161 ~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~ 240 (328)
.|.+++.+...+ ..+-|+.-++++ .-+|++| +++|+..|.--+...+ ||..
T Consensus 124 ~etl~Aae~Lv~-----eGF~VlPY~~~D------~v~a~rL--ed~Gc~aVMPlgsPIG----------------Sg~G 174 (267)
T CHL00162 124 IGTLKAAEFLVK-----KGFTVLPYINAD------PMLAKHL--EDIGCATVMPLGSPIG----------------SGQG 174 (267)
T ss_pred HHHHHHHHHHHH-----CCCEEeecCCCC------HHHHHHH--HHcCCeEEeeccCccc----------------CCCC
Confidence 344444444432 456666555543 3578999 9999998854332211 1222
Q ss_pred CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 241 LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 241 ~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
+. +-.+++.+++..+ +||+.-+||.+++|+.++++.|||+|.+.|++..
T Consensus 175 l~--n~~~l~~i~e~~~--vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIak 223 (267)
T CHL00162 175 LQ--NLLNLQIIIENAK--IPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQ 223 (267)
T ss_pred CC--CHHHHHHHHHcCC--CcEEEeCCcCCHHHHHHHHHcCCCEEeecceeec
Confidence 21 1245666777765 9999999999999999999999999999999973
No 190
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.04 E-value=2e-05 Score=70.89 Aligned_cols=77 Identities=25% Similarity=0.276 Sum_probs=61.8
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+. ++.+++.+-... |...|+ .++.++++.+.++ +||+++|||+|.+|
T Consensus 147 ~~~~~~~~~--~~~-~~~li~~di~~~-------------G~~~g~-----~~~~~~~i~~~~~--ipvi~~GGi~s~ed 203 (233)
T cd04723 147 GPEELLRRL--AKW-PEELIVLDIDRV-------------GSGQGP-----DLELLERLAARAD--IPVIAAGGVRSVED 203 (233)
T ss_pred CHHHHHHHH--HHh-CCeEEEEEcCcc-------------ccCCCc-----CHHHHHHHHHhcC--CCEEEeCCCCCHHH
Confidence 477888888 778 999888764321 223332 4577888888876 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhh
Q psy5880 274 AFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~ 293 (328)
+.+++..||+.|.+||+++.
T Consensus 204 i~~l~~~G~~~vivGsal~~ 223 (233)
T cd04723 204 LELLKKLGASGALVASALHD 223 (233)
T ss_pred HHHHHHcCCCEEEEehHHHc
Confidence 99999999999999999963
No 191
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.03 E-value=1.1e-05 Score=71.50 Aligned_cols=58 Identities=22% Similarity=0.176 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 244 KSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 244 ~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
.+.+.++++++.++ ++||+..|||+|.+++.+++.+|||.|.+|+.+. ++|+++.+..
T Consensus 165 v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~-~dp~~~~~~v 222 (223)
T TIGR01768 165 VPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIE-EDVDKALETI 222 (223)
T ss_pred cCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHh-hCHHHHHHhh
Confidence 34578888998873 3999999999999999999999999999999997 5688877653
No 192
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.03 E-value=3e-05 Score=77.59 Aligned_cols=94 Identities=19% Similarity=0.113 Sum_probs=74.8
Q ss_pred hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH-
Q psy5880 193 DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG- 271 (328)
Q Consensus 193 ~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~- 271 (328)
.+..++|+.. .+.|+|.|++.+-+.. ..++..+...++.++++.+.+. +|+...|||+|.
T Consensus 267 gdPve~a~~y--~~~Gadel~~~Di~~~---------------~~~~~~~~~~~~~i~~i~~~~~--ip~~vGGGIr~~~ 327 (538)
T PLN02617 267 GKPVELAGQY--YKDGADEVAFLNITGF---------------RDFPLGDLPMLEVLRRASENVF--VPLTVGGGIRDFT 327 (538)
T ss_pred CCHHHHHHHH--HHcCCCEEEEEECCCC---------------cCCcccchhHHHHHHHHHhhCC--CCEEEcCCccccc
Confidence 4688999999 9999999988763321 1223334456889999999987 999999999998
Q ss_pred ----------HHHHHHHHhccCeeeehhHHhhc-----------CchHHHHHHHH
Q psy5880 272 ----------KDAFEKIKAGASLVQIYTSFVYH-----------GPPLVTRIKSE 305 (328)
Q Consensus 272 ----------~da~~~l~~GAd~V~vg~a~l~~-----------gp~~~~~i~~~ 305 (328)
+++.+++.+|||-|.++|+.+.+ +|++++++.+.
T Consensus 328 d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~ 382 (538)
T PLN02617 328 DANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRV 382 (538)
T ss_pred cccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHH
Confidence 66999999999999999998854 46888887654
No 193
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.02 E-value=3.3e-05 Score=69.71 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=70.2
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++|+.+ .+.|++.+++..=... ..| .+.+++.++++.+.+ +||-..|||+|.+|
T Consensus 31 dP~~~A~~~--~~~ga~~lhivDLd~a---------------~~g---~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~ 87 (241)
T PRK14114 31 DPAELVEKL--IEEGFTLIHVVDLSKA---------------IEN---SVENLPVLEKLSEFA---EHIQIGGGIRSLDY 87 (241)
T ss_pred CHHHHHHHH--HHCCCCEEEEEECCCc---------------ccC---CcchHHHHHHHHhhc---CcEEEecCCCCHHH
Confidence 578899999 8999999988742111 112 234678889988875 69999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
+.+++.+||+-|.+||..+ ++|++++++.
T Consensus 88 ~~~~l~~Ga~rvvigT~a~-~~p~~l~~~~ 116 (241)
T PRK14114 88 AEKLRKLGYRRQIVSSKVL-EDPSFLKFLK 116 (241)
T ss_pred HHHHHHCCCCEEEECchhh-CCHHHHHHHH
Confidence 9999999999999999997 5799988883
No 194
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.00 E-value=0.00012 Score=65.84 Aligned_cols=153 Identities=20% Similarity=0.195 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe---CC---------
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI---AP--------- 188 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl---~~--------- 188 (328)
...++++..+..+ +.+|-+ ++-|. ..... .+.++.+++. ..+||..|= .+
T Consensus 67 dp~~ia~~Ye~~G--Aa~iSV-LTd~~----~F~Gs----~e~L~~v~~~-------v~~PvL~KDFiiD~yQI~~Ar~~ 128 (254)
T COG0134 67 DPVEIAKAYEEGG--AAAISV-LTDPK----YFQGS----FEDLRAVRAA-------VDLPVLRKDFIIDPYQIYEARAA 128 (254)
T ss_pred CHHHHHHHHHHhC--CeEEEE-ecCcc----ccCCC----HHHHHHHHHh-------cCCCeeeccCCCCHHHHHHHHHc
Confidence 4666888888777 777754 22122 11112 2344555555 689999992 11
Q ss_pred ----------CCChhhHHHHHHHhccccCCccEEE-EecCCc-cchhhhccccccccCCCCCCcC--chHHHHHHHHHHH
Q psy5880 189 ----------DLSLDEKKDIADVVLDSKCKVDGLI-VSNTTV-DRYEYLDARYKEETGGLSGEPL--RNKSTELISEMYK 254 (328)
Q Consensus 189 ----------~~~~~~~~~~a~~l~~~~~G~d~i~-~~n~~~-~~~~~~~~~~~~~~gg~sg~~~--~~~~l~~v~~i~~ 254 (328)
-++++++.++++.+ .+.|.+.++ +||..- .+.-...+. .=|+--..+ ....++...++..
T Consensus 129 GADavLLI~~~L~~~~l~el~~~A--~~LGm~~LVEVh~~eEl~rAl~~ga~----iIGINnRdL~tf~vdl~~t~~la~ 202 (254)
T COG0134 129 GADAVLLIVAALDDEQLEELVDRA--HELGMEVLVEVHNEEELERALKLGAK----IIGINNRDLTTLEVDLETTEKLAP 202 (254)
T ss_pred CcccHHHHHHhcCHHHHHHHHHHH--HHcCCeeEEEECCHHHHHHHHhCCCC----EEEEeCCCcchheecHHHHHHHHh
Confidence 14666788888888 888888865 344210 000000000 001111111 1234667778888
Q ss_pred HcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchH
Q psy5880 255 LTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPL 298 (328)
Q Consensus 255 ~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~ 298 (328)
.++.+..+|+-.||++++|+.++...||+++-||+++|.. ++.
T Consensus 203 ~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~-~~~ 245 (254)
T COG0134 203 LIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRA-DDP 245 (254)
T ss_pred hCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcC-CCH
Confidence 8887899999999999999999999999999999999954 665
No 195
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.99 E-value=2.9e-05 Score=68.10 Aligned_cols=95 Identities=20% Similarity=0.323 Sum_probs=73.3
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..+.++.+ ++.|+--|.++..-.. |--.| +.++.++.+++.++ +|||++||..+++|
T Consensus 156 d~~~Wa~~~--e~~GAGEIlLtsmD~D-------------Gtk~G-----yDl~l~~~v~~~v~--iPvIASGGaG~~eh 213 (256)
T COG0107 156 DAVEWAKEV--EELGAGEILLTSMDRD-------------GTKAG-----YDLELTRAVREAVN--IPVIASGGAGKPEH 213 (256)
T ss_pred CHHHHHHHH--HHcCCceEEEeeeccc-------------ccccC-----cCHHHHHHHHHhCC--CCEEecCCCCcHHH
Confidence 477889999 9999988877643221 11222 24788999999998 99999999999999
Q ss_pred HHHHHHhc-cCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 274 AFEKIKAG-ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 274 a~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
..+++..| ||++..++-|.++ -.-+. ++++||.++|+
T Consensus 214 f~eaf~~~~adAaLAAsiFH~~-~~~i~----evK~yL~~~gi 251 (256)
T COG0107 214 FVEAFTEGKADAALAASIFHFG-EITIG----EVKEYLAEQGI 251 (256)
T ss_pred HHHHHHhcCccHHHhhhhhhcC-cccHH----HHHHHHHHcCC
Confidence 99999877 9999888888653 33343 45778888887
No 196
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.99 E-value=3.6e-05 Score=66.54 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=57.6
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcC-chHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPL-RNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~-~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
..+ .+.|+|+|.++..+.+ .+++.. .+..++.++++++..+ +||++.|||+ .+++.+++
T Consensus 109 ~~~--~~~g~d~i~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~--~pv~a~GGi~-~~~i~~~~ 168 (196)
T cd00564 109 LRA--EELGADYVGFGPVFPT---------------PTKPGAGPPLGLELLREIAELVE--IPVVAIGGIT-PENAAEVL 168 (196)
T ss_pred HHH--hhcCCCEEEECCccCC---------------CCCCCCCCCCCHHHHHHHHHhCC--CCEEEECCCC-HHHHHHHH
Confidence 445 6789999987654322 111111 2334677888877755 9999999995 79999999
Q ss_pred HhccCeeeehhHHhhcCchHHHH
Q psy5880 279 KAGASLVQIYTSFVYHGPPLVTR 301 (328)
Q Consensus 279 ~~GAd~V~vg~a~l~~gp~~~~~ 301 (328)
.+||+.|.+|++++. .++....
T Consensus 169 ~~Ga~~i~~g~~i~~-~~~~~~~ 190 (196)
T cd00564 169 AAGADGVAVISAITG-ADDPAAA 190 (196)
T ss_pred HcCCCEEEEehHhhc-CCCHHHH
Confidence 999999999999974 3554433
No 197
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.99 E-value=0.00049 Score=60.40 Aligned_cols=133 Identities=19% Similarity=0.235 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
..+|++.+.+++ +|++.++..- + +...+.++.+++ .++.+.+=+++.... +..+.
T Consensus 68 ~~~~~~~~~~~g--adgv~vh~~~--~---------~~~~~~~~~~~~--------~g~~~~~~~~~~t~~----e~~~~ 122 (210)
T TIGR01163 68 PDRYIEDFAEAG--ADIITVHPEA--S---------EHIHRLLQLIKD--------LGAKAGIVLNPATPL----EFLEY 122 (210)
T ss_pred HHHHHHHHHHcC--CCEEEEccCC--c---------hhHHHHHHHHHH--------cCCcEEEEECCCCCH----HHHHH
Confidence 356777777776 9999875431 1 112333344433 233444435554332 22333
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC---CCccEEEecCCCCHHHHHHHH
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK---GKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~---~~ipvia~GGI~s~~da~~~l 278 (328)
+ ..++|++.+..... |.+|....+..++.++++++.++ ..+|+.+.|||+ ++.+.+++
T Consensus 123 ~---~~~~d~i~~~~~~~---------------g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~ 183 (210)
T TIGR01163 123 V---LPDVDLVLLMSVNP---------------GFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELA 183 (210)
T ss_pred H---HhhCCEEEEEEEcC---------------CCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHH
Confidence 3 34578865432211 12332233455677777776653 237899999995 79999999
Q ss_pred HhccCeeeehhHHhhcCchHH
Q psy5880 279 KAGASLVQIYTSFVYHGPPLV 299 (328)
Q Consensus 279 ~~GAd~V~vg~a~l~~gp~~~ 299 (328)
+.|||.|.+||+++ +.++.-
T Consensus 184 ~~gad~iivgsai~-~~~d~~ 203 (210)
T TIGR01163 184 EAGADILVAGSAIF-GADDYK 203 (210)
T ss_pred HcCCCEEEEChHHh-CCCCHH
Confidence 99999999999997 335543
No 198
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.98 E-value=3.2e-05 Score=69.94 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=63.5
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+.|+..|.+++-... |..+|+ .+++++++++..+ +|||++|||+|.+|
T Consensus 150 ~~~~~~~~~--~~~g~~~ii~tdI~~d-------------Gt~~G~-----d~~l~~~l~~~~~--~pviasGGv~s~eD 207 (243)
T TIGR01919 150 DLEVLERLL--DSGGCSRVVVTDSKKD-------------GLSGGP-----NELLLEVVAARTD--AIVAASGGSSLLDD 207 (243)
T ss_pred cHHHHHHHH--HhCCCCEEEEEecCCc-------------ccCCCc-----CHHHHHHHHhhCC--CCEEEECCcCCHHH
Confidence 477889999 8999999988763322 445664 3578888888876 99999999999999
Q ss_pred HHHHH---HhccCeeeehhHHhhcCc
Q psy5880 274 AFEKI---KAGASLVQIYTSFVYHGP 296 (328)
Q Consensus 274 a~~~l---~~GAd~V~vg~a~l~~gp 296 (328)
+.+.- ..|++.|.+|++++ +|-
T Consensus 208 l~~l~~l~~~Gv~gvivg~Al~-~g~ 232 (243)
T TIGR01919 208 LRAIKYLDEGGVSVAIGGKLLY-ARF 232 (243)
T ss_pred HHHHHhhccCCeeEEEEhHHHH-cCC
Confidence 99874 35999999999996 443
No 199
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.94 E-value=6.4e-05 Score=67.96 Aligned_cols=88 Identities=13% Similarity=0.054 Sum_probs=70.5
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.+.++.. .+.|+..+++.--.. ..| .+.+.+.++++.+.++ +|+-..|||+|.+|
T Consensus 32 ~p~~~a~~~--~~~g~~~lhivDLd~----------------a~g---~~~n~~~i~~i~~~~~--~~v~vgGGIrs~e~ 88 (243)
T TIGR01919 32 SLESAAKWW--EQGGAEWIHLVDLDA----------------AFG---GGNNEMMLEEVVKLLV--VVEELSGGRRDDSS 88 (243)
T ss_pred CHHHHHHHH--HhCCCeEEEEEECCC----------------CCC---CcchHHHHHHHHHHCC--CCEEEcCCCCCHHH
Confidence 356777888 889999988764211 011 1235688999998887 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+.+++..||+-|.+||..+ ++|++++++.+.
T Consensus 89 ~~~~l~~Ga~~vvigT~a~-~~p~~~~~~~~~ 119 (243)
T TIGR01919 89 LRAALTGGRARVNGGTAAL-ENPWWAAAVIRY 119 (243)
T ss_pred HHHHHHcCCCEEEECchhh-CCHHHHHHHHHH
Confidence 9999999999999999987 579999888654
No 200
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=97.93 E-value=0.00023 Score=67.99 Aligned_cols=132 Identities=12% Similarity=0.118 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..+++++.++++.+ +++.+.+.++...... +..+...+++++|++.. + .+++|.+.....++.++..+++
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~----~~~~~d~~~v~~ir~~~---g--~~~~l~vDaN~~~~~~~a~~~~ 209 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGG----EDLREDLARVRAVREAV---G--PDVDLMVDANGRWDLAEAIRLA 209 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcch----HHHHHHHHHHHHHHHhh---C--CCCEEEEECCCCCCHHHHHHHH
Confidence 35666666666544 7999999887422111 23455677778877763 3 5789999998889988889999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+.|+++|- .| ..+..++..+.+++.++ +||++...+.+++|+.++++
T Consensus 210 ~~l--~~~~i~~iE-------qP------------------~~~~~~~~~~~l~~~~~--ipi~~dE~~~~~~~~~~~i~ 260 (357)
T cd03316 210 RAL--EEYDLFWFE-------EP------------------VPPDDLEGLARLRQATS--VPIAAGENLYTRWEFRDLLE 260 (357)
T ss_pred HHh--CccCCCeEc-------CC------------------CCccCHHHHHHHHHhCC--CCEEeccccccHHHHHHHHH
Confidence 999 777776652 11 11123466778888876 99999999999999999998
Q ss_pred hc-cCeeeehhH
Q psy5880 280 AG-ASLVQIYTS 290 (328)
Q Consensus 280 ~G-Ad~V~vg~a 290 (328)
.| +|+|++--.
T Consensus 261 ~~~~d~v~~k~~ 272 (357)
T cd03316 261 AGAVDIIQPDVT 272 (357)
T ss_pred hCCCCEEecCcc
Confidence 77 899987543
No 201
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.92 E-value=0.00035 Score=61.59 Aligned_cols=57 Identities=25% Similarity=0.302 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 245 STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
..+.++++.+ ..++|..|||+|+|.+.++.++|||.+.+|+.+. ++|+.+.++.+.+
T Consensus 181 ~~e~v~~v~~----~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iie-e~~~~~~~~v~~~ 237 (240)
T COG1646 181 PVEMVSRVLS----DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIE-EDPDKALETVEAI 237 (240)
T ss_pred CHHHHHHhhc----cceEEEcCCcCCHHHHHHHHHcCCCEEEECceee-cCHHHHHHHHHHh
Confidence 3455554443 3599999999999999999999999999999995 6787766665543
No 202
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.92 E-value=0.00018 Score=64.77 Aligned_cols=125 Identities=19% Similarity=0.162 Sum_probs=74.6
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChh---------hHHHHHHHhccc
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLD---------EKKDIADVVLDS 205 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~---------~~~~~a~~l~~~ 205 (328)
++|.+.+-+. . +.....+.+...+-+++|.+.++. ..+|+++= +.+..+ .+...++.+ .
T Consensus 89 GAd~vd~vi~---~-~~~~~~~~~~~~~~i~~v~~~~~~----~gl~vIlE--~~l~~~~~~~~~~~~~I~~a~ria--~ 156 (236)
T PF01791_consen 89 GADEVDVVIN---Y-GALGSGNEDEVIEEIAAVVEECHK----YGLKVILE--PYLRGEEVADEKKPDLIARAARIA--A 156 (236)
T ss_dssp T-SEEEEEEE---H-HHHHTTHHHHHHHHHHHHHHHHHT----SEEEEEEE--ECECHHHBSSTTHHHHHHHHHHHH--H
T ss_pred CCceeeeecc---c-cccccccHHHHHHHHHHHHHHHhc----CCcEEEEE--EecCchhhcccccHHHHHHHHHHH--H
Confidence 4888875332 1 111111233444555555555432 56788876 322222 367788888 8
Q ss_pred cCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCcc----EEEecCC------CCHHHHH
Q psy5880 206 KCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLP----IIGVGGV------FSGKDAF 275 (328)
Q Consensus 206 ~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ip----via~GGI------~s~~da~ 275 (328)
++|+|+|-.+.+. ..| ......+.++++.+..+ +| |.++||| ++.+++.
T Consensus 157 e~GaD~vKt~tg~-----------------~~~--~t~~~~~~~~~~~~~~~--~p~~~~Vk~sGGi~~~~~~~~l~~a~ 215 (236)
T PF01791_consen 157 ELGADFVKTSTGK-----------------PVG--ATPEDVELMRKAVEAAP--VPGKVGVKASGGIDAEDFLRTLEDAL 215 (236)
T ss_dssp HTT-SEEEEE-SS-----------------SSC--SHHHHHHHHHHHHHTHS--STTTSEEEEESSSSHHHHHHSHHHHH
T ss_pred HhCCCEEEecCCc-----------------ccc--ccHHHHHHHHHHHHhcC--CCcceEEEEeCCCChHHHHHHHHHHH
Confidence 9999999554321 111 11223444555555444 67 9999999 9999999
Q ss_pred HHHHhcc--CeeeehhHHh
Q psy5880 276 EKIKAGA--SLVQIYTSFV 292 (328)
Q Consensus 276 ~~l~~GA--d~V~vg~a~l 292 (328)
+++++|| ..+..||.++
T Consensus 216 ~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 216 EFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp HHHHTTHSEEEEEEHHHHH
T ss_pred HHHHcCChhHHHHHHHHHH
Confidence 9999999 7777777764
No 203
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.92 E-value=2.8e-05 Score=69.53 Aligned_cols=50 Identities=26% Similarity=0.374 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCc-cEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCch
Q psy5880 245 STELISEMYKLTKGKL-PIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPP 297 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~i-pvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~ 297 (328)
..+.++++++.++ + ||+..|||++++++.+++.+|||.|.+||++. ++|+
T Consensus 171 ~~e~I~~v~~~~~--~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~-~d~~ 221 (232)
T PRK04169 171 PPEMVKAVKKALD--ITPLIYGGGIRSPEQARELMAAGADTIVVGNIIE-EDPK 221 (232)
T ss_pred CHHHHHHHHHhcC--CCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHh-hCHH
Confidence 3578889998876 7 99999999999999999999999999999997 5676
No 204
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.90 E-value=0.00084 Score=60.82 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=81.1
Q ss_pred HHHHHhcccccEEEEccCCCCCc---chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC----CCChhhHHHHH
Q psy5880 127 KGILKFGDVAHYFVVNVSSPNTA---NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP----DLSLDEKKDIA 199 (328)
Q Consensus 127 ~~a~~~~~~~d~ieiN~scPn~~---g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~----~~~~~~~~~~a 199 (328)
..|...+ +|+|-+|..|=..- |.. .....++++. |++++ .++.++..+.. .+...++.+.+
T Consensus 97 aiA~A~g--a~FIRv~~~~g~~~~d~G~~----~~~a~e~~r~----R~~l~--a~v~ilaDV~~kh~~~l~~~~~~~~~ 164 (254)
T PF03437_consen 97 AIAAATG--ADFIRVNVFVGAYVTDEGII----EGCAGELLRY----RKRLG--ADVKILADVHVKHSSPLATRDLEEAA 164 (254)
T ss_pred HHHHHhC--CCEEEecCEEceecccCccc----cccHHHHHHH----HHHcC--CCeEEEeeechhhcccCCCCCHHHHH
Confidence 4444455 89999886652211 111 1123344433 33333 34666665543 22222344444
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+. ...++|++.+++...+. +..++.++++|+.++ +||+..+|+ |++-+.+++.
T Consensus 165 ~~a~-~~~~aDaviVtG~~TG~---------------------~~~~~~l~~vr~~~~--~PVlvGSGv-t~~Ni~~~l~ 219 (254)
T PF03437_consen 165 KDAV-ERGGADAVIVTGKATGE---------------------PPDPEKLKRVREAVP--VPVLVGSGV-TPENIAEYLS 219 (254)
T ss_pred HHHH-HhcCCCEEEECCcccCC---------------------CCCHHHHHHHHhcCC--CCEEEecCC-CHHHHHHHHH
Confidence 4331 56789999999764321 234678899999987 999999997 7889999886
Q ss_pred hccCeeeehhHHhhc
Q psy5880 280 AGASLVQIYTSFVYH 294 (328)
Q Consensus 280 ~GAd~V~vg~a~l~~ 294 (328)
. ||++.|||.|-.+
T Consensus 220 ~-ADG~IVGS~~K~~ 233 (254)
T PF03437_consen 220 Y-ADGAIVGSYFKKD 233 (254)
T ss_pred h-CCEEEEeeeeeeC
Confidence 5 9999999998533
No 205
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.89 E-value=0.0003 Score=66.69 Aligned_cols=133 Identities=14% Similarity=0.194 Sum_probs=77.3
Q ss_pred cceEEeccCCCCC-cCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcc
Q psy5880 56 AHYFVVNVSSPNT-ANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGD 134 (328)
Q Consensus 56 ~~~v~~n~sspN~-~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~ 134 (328)
+|++++|+|||+. .+.......+.+.+++..+++.. ..|+++|+.|++ ..+.++++.++.++
T Consensus 128 ad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-------~iPV~vKl~p~~---------~~~~~~a~~l~~~G- 190 (334)
T PRK07565 128 ADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-------SIPVAVKLSPYF---------SNLANMAKRLDAAG- 190 (334)
T ss_pred CCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-------CCcEEEEeCCCc---------hhHHHHHHHHHHcC-
Confidence 7999999999666 34443333344666777776553 379999998864 14678888888777
Q ss_pred cccEEEEccCCCCCc-chhh--------hhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccc
Q psy5880 135 VAHYFVVNVSSPNTA-NLRK--------LQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDS 205 (328)
Q Consensus 135 ~~d~ieiN~scPn~~-g~~~--------~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~ 205 (328)
+|+|.+.-+-+... .... ...+......++.|++.++. .++||+. +.++.. ..++.+.+
T Consensus 191 -~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~----~~ipIig--~GGI~s--~~Da~e~l--- 258 (334)
T PRK07565 191 -ADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGR----VGADLAA--TTGVHD--AEDVIKML--- 258 (334)
T ss_pred -CCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhh----cCCCEEE--ECCCCC--HHHHHHHH---
Confidence 99987742222111 0000 01112222233444444322 5789875 333332 45566666
Q ss_pred cCCccEEEEecC
Q psy5880 206 KCKVDGLIVSNT 217 (328)
Q Consensus 206 ~~G~d~i~~~n~ 217 (328)
.+||+++-+...
T Consensus 259 ~aGA~~V~v~t~ 270 (334)
T PRK07565 259 LAGADVVMIASA 270 (334)
T ss_pred HcCCCceeeehH
Confidence 499999977643
No 206
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.89 E-value=0.00077 Score=59.10 Aligned_cols=134 Identities=17% Similarity=0.185 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.++++.+..++ +|++.+|..- . +...+.++.+++ .++-+++=+.+..+. +.++..
T Consensus 70 ~~~~~~~~~~g--~dgv~vh~~~-~----------~~~~~~~~~~~~--------~~~~~g~~~~~~~~~----~~~~~~ 124 (211)
T cd00429 70 ERYIEAFAKAG--ADIITFHAEA-T----------DHLHRTIQLIKE--------LGMKAGVALNPGTPV----EVLEPY 124 (211)
T ss_pred HHHHHHHHHcC--CCEEEECccc-h----------hhHHHHHHHHHH--------CCCeEEEEecCCCCH----HHHHHH
Confidence 55677777766 9999877651 1 112233444333 345555555443322 222333
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC---CCccEEEecCCCCHHHHHHHHH
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK---GKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~---~~ipvia~GGI~s~~da~~~l~ 279 (328)
. .++|++.+..... |.+|....+..++.++++++..+ .++|+++.|||+. +++.+++.
T Consensus 125 --~-~~~d~i~~~~~~~---------------g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~ 185 (211)
T cd00429 125 --L-DEVDLVLVMSVNP---------------GFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAE 185 (211)
T ss_pred --H-hhCCEEEEEEECC---------------CCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHH
Confidence 2 2278775543211 12222223345677777777652 1389999999995 99999999
Q ss_pred hccCeeeehhHHhhcCchHHHH
Q psy5880 280 AGASLVQIYTSFVYHGPPLVTR 301 (328)
Q Consensus 280 ~GAd~V~vg~a~l~~gp~~~~~ 301 (328)
.|||.|.+||+++ +.++....
T Consensus 186 ~gad~iivgsai~-~~~~~~~~ 206 (211)
T cd00429 186 AGADVLVAGSALF-GSDDYAEA 206 (211)
T ss_pred cCCCEEEECHHHh-CCCCHHHH
Confidence 9999999999997 33554333
No 207
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.87 E-value=5.6e-05 Score=67.84 Aligned_cols=76 Identities=18% Similarity=0.123 Sum_probs=60.4
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+.|+..|.+++-... |-.+|+ .+++++++++. . .|++++|||++.+|
T Consensus 147 ~~~e~~~~l--~~~g~~~ii~tdI~~d-------------Gt~~G~-----d~el~~~~~~~-~--~~viasGGv~s~~D 203 (232)
T PRK13586 147 EVIDGIKKV--NELELLGIIFTYISNE-------------GTTKGI-----DYNVKDYARLI-R--GLKEYAGGVSSDAD 203 (232)
T ss_pred CHHHHHHHH--HhcCCCEEEEeccccc-------------ccCcCc-----CHHHHHHHHhC-C--CCEEEECCCCCHHH
Confidence 467889999 9999999877763322 335554 34667777665 4 46999999999999
Q ss_pred HHHHHHhccCeeeehhHHh
Q psy5880 274 AFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l 292 (328)
+.++...|+++|.+|+|++
T Consensus 204 l~~l~~~G~~gvivg~Aly 222 (232)
T PRK13586 204 LEYLKNVGFDYIIVGMAFY 222 (232)
T ss_pred HHHHHHCCCCEEEEehhhh
Confidence 9999999999999999985
No 208
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.87 E-value=0.00039 Score=63.02 Aligned_cols=129 Identities=21% Similarity=0.215 Sum_probs=80.1
Q ss_pred HHHHHhcccccEEEEccCCCCC---cchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeC----CCCChhhHHHHH
Q psy5880 127 KGILKFGDVAHYFVVNVSSPNT---ANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIA----PDLSLDEKKDIA 199 (328)
Q Consensus 127 ~~a~~~~~~~d~ieiN~scPn~---~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~----~~~~~~~~~~~a 199 (328)
..|..++ +|+|-+|..|=.. .|.. .....++++ .+++++ .++.|+..+. ..+....+.+.+
T Consensus 96 ~iA~a~g--a~FIRv~~~~g~~~~d~G~~----~~~a~e~~r----~r~~l~--~~v~i~adV~~kh~~~l~~~~~~e~a 163 (257)
T TIGR00259 96 AIAMAVG--AKFIRVNVLTGVYASDQGII----EGNAGELIR----YKKLLG--SEVKILADIVVKHAVHLGNRDLESIA 163 (257)
T ss_pred HHHHHhC--CCEEEEccEeeeEecccccc----cccHHHHHH----HHHHcC--CCcEEEeceeecccCcCCCCCHHHHH
Confidence 3444445 9999998654121 1111 122334333 233333 3566655443 222223466777
Q ss_pred HHhccccCC-ccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 200 DVVLDSKCK-VDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 200 ~~l~~~~~G-~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
+.+ ...| +|+|.+++...+. +..++.++++++... +.|++..||+ +++.+.+++
T Consensus 164 ~~~--~~~~~aDavivtG~~TG~---------------------~~d~~~l~~vr~~~~-~~PvllggGv-t~eNv~e~l 218 (257)
T TIGR00259 164 LDT--VERGLADAVILSGKTTGT---------------------EVDLELLKLAKETVK-DTPVLAGSGV-NLENVEELL 218 (257)
T ss_pred HHH--HHhcCCCEEEECcCCCCC---------------------CCCHHHHHHHHhccC-CCeEEEECCC-CHHHHHHHH
Confidence 766 5555 9999999864331 123567778887653 4899999998 789999999
Q ss_pred HhccCeeeehhHHhh
Q psy5880 279 KAGASLVQIYTSFVY 293 (328)
Q Consensus 279 ~~GAd~V~vg~a~l~ 293 (328)
.. ||+|.|||.+-.
T Consensus 219 ~~-adGviVgS~~K~ 232 (257)
T TIGR00259 219 SI-ADGVIVATTIKK 232 (257)
T ss_pred hh-CCEEEECCCccc
Confidence 87 999999999853
No 209
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.86 E-value=0.0019 Score=57.55 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
...|++....++ +|.|.+|.-+.. .+.++++.+|+. ++-..+-+.|..+.+.+..+++.
T Consensus 74 P~~~i~~~~~~g--ad~I~~H~Ea~~-----------~~~~~l~~Ir~~--------g~k~GlalnP~T~~~~i~~~l~~ 132 (223)
T PRK08745 74 VDRIVPDFADAG--ATTISFHPEASR-----------HVHRTIQLIKSH--------GCQAGLVLNPATPVDILDWVLPE 132 (223)
T ss_pred HHHHHHHHHHhC--CCEEEEcccCcc-----------cHHHHHHHHHHC--------CCceeEEeCCCCCHHHHHHHHhh
Confidence 455666666666 999998876311 134566677663 56678888888775555555443
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC---CCccEEEecCCCCHHHHHHHH
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK---GKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~---~~ipvia~GGI~s~~da~~~l 278 (328)
+|.|.+-... -|++|-...+..++.++++++..+ .++.|-.-|||+ .+.+.++.
T Consensus 133 -------vD~VlvMtV~---------------PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~ 189 (223)
T PRK08745 133 -------LDLVLVMSVN---------------PGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIA 189 (223)
T ss_pred -------cCEEEEEEEC---------------CCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHH
Confidence 5777654322 234555566777888888877643 136689999996 88999999
Q ss_pred HhccCeeeehhHHhhcCchHHHHHHHHHHH
Q psy5880 279 KAGASLVQIYTSFVYHGPPLVTRIKSELEE 308 (328)
Q Consensus 279 ~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~ 308 (328)
++|||.+.+||++. +.++ .....+.+++
T Consensus 190 ~aGaDi~V~GSaiF-~~~d-~~~~~~~lr~ 217 (223)
T PRK08745 190 AAGADTFVAGSAIF-NAPD-YAQVIAQMRA 217 (223)
T ss_pred HcCCCEEEEChhhh-CCCC-HHHHHHHHHH
Confidence 99999999999986 3344 3333334443
No 210
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.85 E-value=0.00046 Score=67.68 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=80.2
Q ss_pred HHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEE-eCCCCChhhHHHHHHHhc
Q psy5880 125 SVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVK-IAPDLSLDEKKDIADVVL 203 (328)
Q Consensus 125 ~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vK-l~~~~~~~~~~~~a~~l~ 203 (328)
.++.+.+++ +|++.++.. .. ...+.++++.+++ .+.++++- +++..+ .+.++.+
T Consensus 73 ~v~~a~~aG--AdgV~v~g~--~~--------~~~~~~~i~~a~~--------~G~~~~~g~~s~~t~----~e~~~~a- 127 (430)
T PRK07028 73 EVEMAAKAG--ADIVCILGL--AD--------DSTIEDAVRAARK--------YGVRLMADLINVPDP----VKRAVEL- 127 (430)
T ss_pred HHHHHHHcC--CCEEEEecC--CC--------hHHHHHHHHHHHH--------cCCEEEEEecCCCCH----HHHHHHH-
Confidence 566666666 898875422 11 1113344444443 35666663 454322 2345667
Q ss_pred cccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccC
Q psy5880 204 DSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGAS 283 (328)
Q Consensus 204 ~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd 283 (328)
.+.|+|+|.++..... ....+..++.++++++.++ +||++.||| +.+.+.+++.+||+
T Consensus 128 -~~~GaD~I~~~pg~~~------------------~~~~~~~~~~l~~l~~~~~--iPI~a~GGI-~~~n~~~~l~aGAd 185 (430)
T PRK07028 128 -EELGVDYINVHVGIDQ------------------QMLGKDPLELLKEVSEEVS--IPIAVAGGL-DAETAAKAVAAGAD 185 (430)
T ss_pred -HhcCCCEEEEEeccch------------------hhcCCChHHHHHHHHhhCC--CcEEEECCC-CHHHHHHHHHcCCC
Confidence 7889999966521110 0000123567888888776 999999999 68999999999999
Q ss_pred eeeehhHHhhcCchH
Q psy5880 284 LVQIYTSFVYHGPPL 298 (328)
Q Consensus 284 ~V~vg~a~l~~gp~~ 298 (328)
.|.+||+++. .+++
T Consensus 186 gv~vGsaI~~-~~d~ 199 (430)
T PRK07028 186 IVIVGGNIIK-SADV 199 (430)
T ss_pred EEEEChHHcC-CCCH
Confidence 9999999973 3443
No 211
>PRK14057 epimerase; Provisional
Probab=97.85 E-value=0.0017 Score=58.68 Aligned_cols=158 Identities=13% Similarity=0.115 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHH-HHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVET-RNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~-~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+.|++....++ +|.|.+|.-+.. .+.+.++.||+. .+..+...++-..+-+.|..+.+.+..+++
T Consensus 87 P~~~i~~~~~aG--ad~It~H~Ea~~-----------~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~ 153 (254)
T PRK14057 87 QWTAAQACVKAG--AHCITLQAEGDI-----------HLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILS 153 (254)
T ss_pred HHHHHHHHHHhC--CCEEEEeecccc-----------CHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHH
Confidence 566777777777 999998876311 134556666654 000000001236888888877555555444
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC---CccEEEecCCCCHHHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG---KLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~---~ipvia~GGI~s~~da~~~ 277 (328)
. +|.|.+-... -|++|....+..++.++++++..+. ++.|-.-||| +.+-+.++
T Consensus 154 ~-------vD~VLvMtV~---------------PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l 210 (254)
T PRK14057 154 D-------VEVIQLLAVN---------------PGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSL-TQDQLPSL 210 (254)
T ss_pred h-------CCEEEEEEEC---------------CCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHH
Confidence 3 5777654322 2355666667788888888776532 3668899998 56688899
Q ss_pred HHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCCC
Q psy5880 278 IKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNS 317 (328)
Q Consensus 278 l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~s 317 (328)
.++|||.+.+||+++ +.++ .++..+.++..+...|-.+
T Consensus 211 ~~aGad~~V~GSalF-~~~d-~~~~i~~l~~~~~~~~~~~ 248 (254)
T PRK14057 211 IAQGIDRVVSGSALF-RDDR-LVENTRSWRAMFKVAGDTT 248 (254)
T ss_pred HHCCCCEEEEChHhh-CCCC-HHHHHHHHHHHHhhcCCcc
Confidence 999999999999986 4455 4555566666666666443
No 212
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.85 E-value=0.00049 Score=62.02 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHH
Q psy5880 245 STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTR 301 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~ 301 (328)
.+....++...++.+..+|+.+||+|++|+.++... +|+|-||+++|.. ++....
T Consensus 188 d~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~-~d~~~~ 242 (247)
T PRK13957 188 HQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK-KDIRKA 242 (247)
T ss_pred CHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC-CCHHHH
Confidence 456677888888877889999999999999998876 9999999999954 554333
No 213
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.85 E-value=0.00014 Score=63.96 Aligned_cols=51 Identities=24% Similarity=0.394 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchH
Q psy5880 245 STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPL 298 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~ 298 (328)
+++.++++++..+ ++||++.||| +.+++.+++.+||+.|.+|++++ +.++.
T Consensus 147 g~~~~~~~~~~~~-~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~-~~~d~ 197 (212)
T PRK00043 147 GLEGLREIRAAVG-DIPIVAIGGI-TPENAPEVLEAGADGVAVVSAIT-GAEDP 197 (212)
T ss_pred CHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhh-cCCCH
Confidence 3677888887764 4999999999 69999999999999999999986 44553
No 214
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.84 E-value=8.3e-05 Score=67.44 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=62.9
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.+++..+ .+.|+..|.++.-... |.+.|+ .++.++++++.++ +|||++|||.+.+|
T Consensus 164 ~~~e~~~~~--~~~g~~eii~TdI~rD-------------Gtl~G~-----d~el~~~l~~~~~--ipVIASGGv~sleD 221 (262)
T PLN02446 164 AVDEETLEF--LAAYCDEFLVHGVDVE-------------GKRLGI-----DEELVALLGEHSP--IPVTYAGGVRSLDD 221 (262)
T ss_pred CHHHHHHHH--HHhCCCEEEEEEEcCC-------------CcccCC-----CHHHHHHHHhhCC--CCEEEECCCCCHHH
Confidence 466777777 7889999987753322 445564 3688899998877 99999999999999
Q ss_pred HHHHHHh--ccCeeeehhHHh-hcCc
Q psy5880 274 AFEKIKA--GASLVQIYTSFV-YHGP 296 (328)
Q Consensus 274 a~~~l~~--GAd~V~vg~a~l-~~gp 296 (328)
+.++... |...|.+|+|+. |+|-
T Consensus 222 i~~L~~~g~g~~gvIvGkAl~~y~g~ 247 (262)
T PLN02446 222 LERVKVAGGGRVDVTVGSALDIFGGN 247 (262)
T ss_pred HHHHHHcCCCCEEEEEEeeHHHhCCC
Confidence 9999987 468899999983 4544
No 215
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.83 E-value=8.3e-05 Score=66.17 Aligned_cols=89 Identities=27% Similarity=0.326 Sum_probs=73.0
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.+.++.. .+.|+..+|+..=. |...| .+.+++.++++.+.++ .||=..|||+|-++
T Consensus 32 ~P~~~a~~~--~~~Ga~~lHlVDLd---------------gA~~g---~~~n~~~i~~i~~~~~--~~vQvGGGIRs~~~ 89 (241)
T COG0106 32 DPLEVAKKW--SDQGAEWLHLVDLD---------------GAKAG---GPRNLEAIKEILEATD--VPVQVGGGIRSLED 89 (241)
T ss_pred CHHHHHHHH--HHcCCcEEEEeecc---------------ccccC---CcccHHHHHHHHHhCC--CCEEeeCCcCCHHH
Confidence 467888989 89999999886421 11112 2345788999999987 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+.+++.+|++-|.+||..+ ++|++++++.+.
T Consensus 90 v~~ll~~G~~rViiGt~av-~~p~~v~~~~~~ 120 (241)
T COG0106 90 VEALLDAGVARVIIGTAAV-KNPDLVKELCEE 120 (241)
T ss_pred HHHHHHCCCCEEEEeccee-cCHHHHHHHHHH
Confidence 9999999999999999987 569999988765
No 216
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=97.78 E-value=0.0028 Score=56.60 Aligned_cols=133 Identities=10% Similarity=0.017 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
...|++....++ +|.|.+|.=+.. .+.++++.+|+. + .++-..+-+.|..+.+.+..+++.
T Consensus 80 P~~~i~~~~~aG--ad~It~H~Ea~~-----------~~~~~l~~Ik~~----g--~~~kaGlalnP~Tp~~~i~~~l~~ 140 (228)
T PRK08091 80 QFEVAKACVAAG--ADIVTLQVEQTH-----------DLALTIEWLAKQ----K--TTVLIGLCLCPETPISLLEPYLDQ 140 (228)
T ss_pred HHHHHHHHHHhC--CCEEEEcccCcc-----------cHHHHHHHHHHC----C--CCceEEEEECCCCCHHHHHHHHhh
Confidence 566777777777 999998876211 134566677664 1 122668888888775555544433
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC---CccEEEecCCCCHHHHHHHH
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG---KLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~---~ipvia~GGI~s~~da~~~l 278 (328)
+|.|.+-... -|++|....+..++.++++++..+. ++.|-.-|||+ .+-+.++.
T Consensus 141 -------vD~VLiMtV~---------------PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~ 197 (228)
T PRK08091 141 -------IDLIQILTLD---------------PRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLK 197 (228)
T ss_pred -------cCEEEEEEEC---------------CCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHH
Confidence 5777654332 2345555567778888888876432 36688999986 78899999
Q ss_pred HhccCeeeehhHHhhcCch
Q psy5880 279 KAGASLVQIYTSFVYHGPP 297 (328)
Q Consensus 279 ~~GAd~V~vg~a~l~~gp~ 297 (328)
++|||.+.+||+++ +.++
T Consensus 198 ~aGaD~~V~GSalF-~~~d 215 (228)
T PRK08091 198 QHQIDWVVSGSALF-SQGE 215 (228)
T ss_pred HCCCCEEEEChhhh-CCCC
Confidence 99999999999986 3355
No 217
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.77 E-value=0.00018 Score=72.08 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=72.4
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..++++.+ ++.|+..|.+++-... |...|+ .++.++.+++.++ +|||++||+.+++|
T Consensus 439 ~~~~~~~~~--~~~Gageil~t~id~D-------------Gt~~G~-----d~~l~~~v~~~~~--ipviasGG~g~~~d 496 (538)
T PLN02617 439 GAYELAKAV--EELGAGEILLNCIDCD-------------GQGKGF-----DIELVKLVSDAVT--IPVIASSGAGTPEH 496 (538)
T ss_pred CHHHHHHHH--HhcCCCEEEEeecccc-------------ccccCc-----CHHHHHHHHhhCC--CCEEEECCCCCHHH
Confidence 478899999 9999999977653322 334453 4688888999887 99999999999999
Q ss_pred HHHHHH-hccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 274 AFEKIK-AGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 274 a~~~l~-~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
+.+.+. .||+++..++-|.+. -.-+.+ ++++|...|+
T Consensus 497 ~~~~~~~~~~~a~~aa~~fh~~-~~~~~~----~k~~l~~~gi 534 (538)
T PLN02617 497 FSDVFSKTNASAALAAGIFHRK-EVPISS----VKEHLLEEGI 534 (538)
T ss_pred HHHHHhcCCccEEEEEeeeccC-CCCHHH----HHHHHHHCCC
Confidence 999997 679999988888653 222444 4566777776
No 218
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.76 E-value=0.002 Score=57.05 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
..++++.+..++ +|++.+|..-+ +...+.++.+++ .++.+++-+.+..+. +.++.
T Consensus 73 ~~~~i~~~~~~g--~d~v~vh~~~~-----------~~~~~~~~~~~~--------~~~~~g~~~~~~t~~----e~~~~ 127 (220)
T PRK05581 73 PDRYVPDFAKAG--ADIITFHVEAS-----------EHIHRLLQLIKS--------AGIKAGLVLNPATPL----EPLED 127 (220)
T ss_pred HHHHHHHHHHcC--CCEEEEeeccc-----------hhHHHHHHHHHH--------cCCEEEEEECCCCCH----HHHHH
Confidence 344556665666 89998776521 112233444443 355666666554332 22333
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC-C--ccEEEecCCCCHHHHHHHH
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG-K--LPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~-~--ipvia~GGI~s~~da~~~l 278 (328)
+ ..++|++.+..... |.+|....+..++.++++++..+. + .+|...|||+. +.+.+++
T Consensus 128 ~---~~~~d~i~~~~~~~---------------g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~ 188 (220)
T PRK05581 128 V---LDLLDLVLLMSVNP---------------GFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECA 188 (220)
T ss_pred H---HhhCCEEEEEEECC---------------CCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHH
Confidence 3 23477765532111 122223334556777777766432 1 33567799988 8999999
Q ss_pred HhccCeeeehhHHhhcCchHHHH
Q psy5880 279 KAGASLVQIYTSFVYHGPPLVTR 301 (328)
Q Consensus 279 ~~GAd~V~vg~a~l~~gp~~~~~ 301 (328)
+.|+|.|.+||+++ +.++....
T Consensus 189 ~~GaD~vvvgSai~-~~~d~~~~ 210 (220)
T PRK05581 189 EAGADVFVAGSAVF-GAPDYKEA 210 (220)
T ss_pred HcCCCEEEEChhhh-CCCCHHHH
Confidence 99999999999997 44664333
No 219
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.76 E-value=0.00023 Score=69.88 Aligned_cols=76 Identities=14% Similarity=0.087 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHHh
Q psy5880 245 STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAV 322 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~ 322 (328)
.+....++...++.++.+|+-+||+|++|+..+ +.|||+|-||+++|. .++....+.+-+....+=+|+++.+|++
T Consensus 196 d~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~lm~-~~d~~~~~~~L~~~~vKICGit~~eda~ 271 (454)
T PRK09427 196 DLNRTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSLMA-EDDLELAVRKLILGENKVCGLTRPQDAK 271 (454)
T ss_pred CHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHHcC-CCCHHHHHHHHhccccccCCCCCHHHHH
Confidence 466677788888778899999999999999996 458999999999995 4765544443333334558999988875
No 220
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.73 E-value=0.00026 Score=63.08 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=52.9
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCe
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASL 284 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~ 284 (328)
.+.|+|++.++.- +. . +.+...|..++.++.+++.++ +||++.||| +.+++.+++.+||+.
T Consensus 128 ~~~gaDYv~~Gpv-~t-~--------------tK~~~~p~gl~~l~~~~~~~~--iPvvAIGGI-~~~n~~~~~~~GA~g 188 (221)
T PRK06512 128 GELRPDYLFFGKL-GA-D--------------NKPEAHPRNLSLAEWWAEMIE--IPCIVQAGS-DLASAVEVAETGAEF 188 (221)
T ss_pred hhcCCCEEEECCC-CC-C--------------CCCCCCCCChHHHHHHHHhCC--CCEEEEeCC-CHHHHHHHHHhCCCE
Confidence 6789999977642 21 0 001122344666777777776 999999999 999999999999999
Q ss_pred eeehhHHhh
Q psy5880 285 VQIYTSFVY 293 (328)
Q Consensus 285 V~vg~a~l~ 293 (328)
|.+-++++.
T Consensus 189 iAvisai~~ 197 (221)
T PRK06512 189 VALERAVFD 197 (221)
T ss_pred EEEhHHhhC
Confidence 999999973
No 221
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.73 E-value=0.0015 Score=61.42 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.+ +++.+.+|++. +++...+.++++++.. .++++.++....++.++..++++
T Consensus 135 ~~~~~~~~~~~~~~Gf~~iKik~g~----------~~~~d~~~v~~lr~~~------g~~~l~vD~n~~~~~~~A~~~~~ 198 (316)
T cd03319 135 PEAMAAAAKKAAKRGFPLLKIKLGG----------DLEDDIERIRAIREAA------PDARLRVDANQGWTPEEAVELLR 198 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCC----------ChhhHHHHHHHHHHhC------CCCeEEEeCCCCcCHHHHHHHHH
Confidence 3445555555443 69999999862 1233467777777662 15789999998898888899999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.++.+|- .| + .+...+..+++++.++ +||++.+.+.+.+++.++++.
T Consensus 199 ~l--~~~~l~~iE-------eP-------------~-----~~~d~~~~~~L~~~~~--ipIa~~E~~~~~~~~~~~~~~ 249 (316)
T cd03319 199 EL--AELGVELIE-------QP-------------V-----PAGDDDGLAYLRDKSP--LPIMADESCFSAADAARLAGG 249 (316)
T ss_pred HH--HhcCCCEEE-------CC-------------C-----CCCCHHHHHHHHhcCC--CCEEEeCCCCCHHHHHHHHhc
Confidence 99 888887771 11 1 1122456778888877 999999999999999999985
Q ss_pred c-cCeeeehhHHhhcCchHHHHH
Q psy5880 281 G-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 281 G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
| +|.|++-...+ .|..-..++
T Consensus 250 ~~~d~v~~~~~~~-GGi~~~~~~ 271 (316)
T cd03319 250 GAYDGINIKLMKT-GGLTEALRI 271 (316)
T ss_pred CCCCEEEEecccc-CCHHHHHHH
Confidence 5 99999875543 344434443
No 222
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.73 E-value=0.0052 Score=59.19 Aligned_cols=135 Identities=17% Similarity=0.195 Sum_probs=83.0
Q ss_pred HHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEE-EeCCCCChhhHHHHHHHhcc
Q psy5880 126 VKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILV-KIAPDLSLDEKKDIADVVLD 204 (328)
Q Consensus 126 ~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~v-Kl~~~~~~~~~~~~a~~l~~ 204 (328)
++.+.+++ +|.+.+|...+. +.+.+.++.+++ .++-+.+ -+.+. + ..+.++.+
T Consensus 243 v~~~a~aG--AD~vTVH~ea~~----------~ti~~ai~~akk--------~GikvgVD~lnp~-t---p~e~i~~l-- 296 (391)
T PRK13307 243 ARMAADAT--ADAVVISGLAPI----------STIEKAIHEAQK--------TGIYSILDMLNVE-D---PVKLLESL-- 296 (391)
T ss_pred HHHHHhcC--CCEEEEeccCCH----------HHHHHHHHHHHH--------cCCEEEEEEcCCC-C---HHHHHHHh--
Confidence 44455555 999998876321 124455555554 3455566 44443 2 23444444
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCe
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASL 284 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~ 284 (328)
..++|.|.++..... ++. +..++.++++++.. .+++|...|||+ .+.+.+++.+|||.
T Consensus 297 -~~~vD~Vllht~vdp-------------~~~------~~~~~kI~~ikk~~-~~~~I~VdGGI~-~eti~~l~~aGADi 354 (391)
T PRK13307 297 -KVKPDVVELHRGIDE-------------EGT------EHAWGNIKEIKKAG-GKILVAVAGGVR-VENVEEALKAGADI 354 (391)
T ss_pred -hCCCCEEEEccccCC-------------Ccc------cchHHHHHHHHHhC-CCCcEEEECCcC-HHHHHHHHHcCCCE
Confidence 568999877742211 111 11345677777763 358999999998 89999999999999
Q ss_pred eeehhHHhhcCchHHHHHHHHHHHHH
Q psy5880 285 VQIYTSFVYHGPPLVTRIKSELEELL 310 (328)
Q Consensus 285 V~vg~a~l~~gp~~~~~i~~~l~~~m 310 (328)
+.+||++. +.++ ..+..+.+.+.|
T Consensus 355 vVVGsaIf-~a~D-p~~aak~l~~~i 378 (391)
T PRK13307 355 LVVGRAIT-KSKD-VRRAAEDFLNKL 378 (391)
T ss_pred EEEeHHHh-CCCC-HHHHHHHHHHhh
Confidence 99999986 3344 333333444444
No 223
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.72 E-value=0.00023 Score=67.47 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 243 NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 243 ~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
+.+++.++.+++..+ +|+++.|||+ .+.+.+++.+||+.|.++++++.
T Consensus 280 ~~Gle~l~~~~~~~~--iPv~AiGGI~-~~ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 280 PAGLEYLKYAAKEAP--IPWFAIGGID-KSNIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred CCCHHHHHHHHHhCC--CCEEEECCCC-HHHHHHHHHcCCcEEEEeHHHhC
Confidence 445788888888776 9999999995 89999999999999999999973
No 224
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.71 E-value=0.0024 Score=56.55 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=72.8
Q ss_pred HHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhcccc
Q psy5880 127 KGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSK 206 (328)
Q Consensus 127 ~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~ 206 (328)
+.+..++ ++++. +|+.. .++++..++ .++|++ +.-.+. .++.. + .+
T Consensus 82 ~~a~~aG--A~Fiv----sP~~~-----------~~v~~~~~~--------~~i~~i---PG~~T~---~E~~~-A--~~ 127 (213)
T PRK06552 82 RLAILAG--AQFIV----SPSFN-----------RETAKICNL--------YQIPYL---PGCMTV---TEIVT-A--LE 127 (213)
T ss_pred HHHHHcC--CCEEE----CCCCC-----------HHHHHHHHH--------cCCCEE---CCcCCH---HHHHH-H--HH
Confidence 4455555 88887 77752 234443332 477875 233443 34434 4 58
Q ss_pred CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeee
Q psy5880 207 CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286 (328)
Q Consensus 207 ~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~ 286 (328)
+|+|++-++-. .. .+.++++.++..++ ++|++++|||+ .+.+.+++++||++|.
T Consensus 128 ~Gad~vklFPa-----------------~~-------~G~~~ik~l~~~~p-~ip~~atGGI~-~~N~~~~l~aGa~~va 181 (213)
T PRK06552 128 AGSEIVKLFPG-----------------ST-------LGPSFIKAIKGPLP-QVNVMVTGGVN-LDNVKDWFAAGADAVG 181 (213)
T ss_pred cCCCEEEECCc-----------------cc-------CCHHHHHHHhhhCC-CCEEEEECCCC-HHHHHHHHHCCCcEEE
Confidence 99999976321 01 12467888888775 59999999996 7999999999999999
Q ss_pred ehhHHh
Q psy5880 287 IYTSFV 292 (328)
Q Consensus 287 vg~a~l 292 (328)
+|+.++
T Consensus 182 vgs~l~ 187 (213)
T PRK06552 182 IGGELN 187 (213)
T ss_pred EchHHh
Confidence 999996
No 225
>PRK08005 epimerase; Validated
Probab=97.69 E-value=0.0037 Score=55.17 Aligned_cols=130 Identities=13% Similarity=0.084 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
.+.|++....++ +|.|.+|.-+.. .+.++++.||+. +.-..+-+.|..+.+.+..++..
T Consensus 70 P~~~i~~~~~~g--ad~It~H~Ea~~-----------~~~~~l~~Ik~~--------G~k~GlAlnP~Tp~~~i~~~l~~ 128 (210)
T PRK08005 70 PQRWLPWLAAIR--PGWIFIHAESVQ-----------NPSEILADIRAI--------GAKAGLALNPATPLLPYRYLALQ 128 (210)
T ss_pred HHHHHHHHHHhC--CCEEEEcccCcc-----------CHHHHHHHHHHc--------CCcEEEEECCCCCHHHHHHHHHh
Confidence 456777776777 899998876211 134566677663 56678888898775555554442
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+|.|.+-... -|+.|-...+..++.++++++..+. ..|-.-|||+ .+-+.++.++|
T Consensus 129 -------vD~VlvMsV~---------------PGf~GQ~f~~~~~~KI~~l~~~~~~-~~I~VDGGI~-~~~i~~l~~aG 184 (210)
T PRK08005 129 -------LDALMIMTSE---------------PDGRGQQFIAAMCEKVSQSREHFPA-AECWADGGIT-LRAARLLAAAG 184 (210)
T ss_pred -------cCEEEEEEec---------------CCCccceecHHHHHHHHHHHHhccc-CCEEEECCCC-HHHHHHHHHCC
Confidence 5777654332 2345555667788999999887653 5789999996 88888999999
Q ss_pred cCeeeehhHHhhcCch
Q psy5880 282 ASLVQIYTSFVYHGPP 297 (328)
Q Consensus 282 Ad~V~vg~a~l~~gp~ 297 (328)
||.+.+||+++ +.++
T Consensus 185 ad~~V~GsaiF-~~~d 199 (210)
T PRK08005 185 AQHLVIGRALF-TTAN 199 (210)
T ss_pred CCEEEEChHhh-CCCC
Confidence 99999999986 4455
No 226
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.68 E-value=7.9e-05 Score=66.29 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=40.5
Q ss_pred HHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 249 ISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 249 v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+.++++.+. ++|+|..|||+|.+.+.++.++|||.|.+|+++. ++++ +.++.+.+
T Consensus 173 v~~~~~~~~-~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~ie-e~~~-~e~~~~~i 227 (230)
T PF01884_consen 173 VIAAVKKLS-DIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIE-EDPD-LEEALETI 227 (230)
T ss_dssp HHHHHHHSS-SSEEEEESS--SHHHHHHHHCTTSSEEEESCHHH-HHH--HHHHHTHH
T ss_pred HHHHHHhcC-CccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEE-Ecch-HHHHHHHH
Confidence 344444443 4999999999999999999999999999999995 5465 55554443
No 227
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.67 E-value=0.00055 Score=60.37 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=56.1
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCe
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASL 284 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~ 284 (328)
.+.|+|+|.+..-+.. -+.+...+..++.++.+++..+ +|+++.||| +++.+.+.+.+||+.
T Consensus 121 ~~~g~DYv~~GpifpT---------------~tK~~~~~~G~~~l~~~~~~~~--iP~vAIGGi-~~~nv~~v~~~Ga~g 182 (211)
T COG0352 121 EELGADYVGLGPIFPT---------------STKPDAPPLGLEGLREIRELVN--IPVVAIGGI-NLENVPEVLEAGADG 182 (211)
T ss_pred HhcCCCEEEECCcCCC---------------CCCCCCCccCHHHHHHHHHhCC--CCEEEEcCC-CHHHHHHHHHhCCCe
Confidence 6788999966543221 0111113456788888888876 999999998 799999999999999
Q ss_pred eeehhHHhhcCchH
Q psy5880 285 VQIYTSFVYHGPPL 298 (328)
Q Consensus 285 V~vg~a~l~~gp~~ 298 (328)
|.+-|+++. ..+.
T Consensus 183 VAvvsai~~-a~d~ 195 (211)
T COG0352 183 VAVVSAITS-AADP 195 (211)
T ss_pred EEehhHhhc-CCCH
Confidence 999999984 3443
No 228
>KOG1606|consensus
Probab=97.66 E-value=0.00011 Score=63.59 Aligned_cols=66 Identities=26% Similarity=0.397 Sum_probs=51.8
Q ss_pred CCccEE--EecCCCCHHHHHHHHHhccCeeeehhHHh------------------hcCchHHHHHHHHHHHHHHHhCCCC
Q psy5880 258 GKLPII--GVGGVFSGKDAFEKIKAGASLVQIYTSFV------------------YHGPPLVTRIKSELEELLQKEGYNS 317 (328)
Q Consensus 258 ~~ipvi--a~GGI~s~~da~~~l~~GAd~V~vg~a~l------------------~~gp~~~~~i~~~l~~~m~~~g~~s 317 (328)
+++||+ +.|||.||.|+.-++++|||.|.+|++++ |++|....++..+|.+.|...++.+
T Consensus 206 GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVqAvthy~dp~~L~evS~~Lg~aM~g~~i~~ 285 (296)
T KOG1606|consen 206 GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQAVTHYDDPAKLAEVSSGLGEAMVGISIQS 285 (296)
T ss_pred CCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHHHHHHHccCCHHHHHHHhccHHHHhhcccccc
Confidence 358886 89999999999999999999999999886 3455555666667777887777777
Q ss_pred HHHHhc
Q psy5880 318 VSQAVG 323 (328)
Q Consensus 318 i~e~~G 323 (328)
+.+-.+
T Consensus 286 ~~~~~f 291 (296)
T KOG1606|consen 286 IKEARF 291 (296)
T ss_pred hhhhhc
Confidence 665443
No 229
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.65 E-value=0.00099 Score=68.52 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHH
Q psy5880 244 KSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 244 ~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i 302 (328)
..+....++...++.++.+|+-+||++++|+..+..+|||+|.||+++|. .++.-..+
T Consensus 196 vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~-~~dp~~~~ 253 (695)
T PRK13802 196 VDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVAT-ADDHELAV 253 (695)
T ss_pred eCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhC-CCCHHHHH
Confidence 34677778888887788999999999999999999999999999999995 46643333
No 230
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.64 E-value=0.00094 Score=58.06 Aligned_cols=45 Identities=22% Similarity=0.173 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 246 TELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 246 l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
.++++.+++.++ ++|+++.||| +++.+.+++++||++|.+++++.
T Consensus 131 ~~~~~~l~~~~~-~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 131 PAYIKALKGPFP-QVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHHHHHHhhCC-CCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 467777777664 4999999999 99999999999999999999985
No 231
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.61 E-value=0.00017 Score=62.17 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=53.1
Q ss_pred HHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
+..+ .+.|+|++.++.-+.. -|.+...+.+++.+.++++..+ +||++.||| +++++.+++
T Consensus 108 ~~~a--~~~g~dYv~~gpvf~T---------------~sk~~~~~~g~~~l~~~~~~~~--~pv~AlGGI-~~~~i~~l~ 167 (180)
T PF02581_consen 108 AREA--EELGADYVFLGPVFPT---------------SSKPGAPPLGLDGLREIARASP--IPVYALGGI-TPENIPELR 167 (180)
T ss_dssp HHHH--HHCTTSEEEEETSS-----------------SSSSS-TTCHHHHHHHHHHHTS--SCEEEESS---TTTHHHHH
T ss_pred HHHh--hhcCCCEEEECCccCC---------------CCCccccccCHHHHHHHHHhCC--CCEEEEcCC-CHHHHHHHH
Confidence 4556 6889999987754332 1122224567888888988887 999999999 799999999
Q ss_pred HhccCeeeehhHH
Q psy5880 279 KAGASLVQIYTSF 291 (328)
Q Consensus 279 ~~GAd~V~vg~a~ 291 (328)
++||+.|.+-+++
T Consensus 168 ~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 168 EAGADGVAVISAI 180 (180)
T ss_dssp HTT-SEEEESHHH
T ss_pred HcCCCEEEEEeeC
Confidence 9999999998875
No 232
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.57 E-value=0.0021 Score=55.79 Aligned_cols=70 Identities=20% Similarity=0.241 Sum_probs=53.9
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..++.+ + .+.|+|++-++-|.. ..++++++.+++.++ ++|+++.||| |++++
T Consensus 115 ~~e~~~-A--~~~Gadyv~~Fpt~~-----------------------~~G~~~l~~~~~~~~-~ipvvaiGGI-~~~n~ 166 (187)
T PRK07455 115 PTEIVT-A--WQAGASCVKVFPVQA-----------------------VGGADYIKSLQGPLG-HIPLIPTGGV-TLENA 166 (187)
T ss_pred HHHHHH-H--HHCCCCEEEECcCCc-----------------------ccCHHHHHHHHhhCC-CCcEEEeCCC-CHHHH
Confidence 345544 4 579999997632210 113577888888874 4999999999 78999
Q ss_pred HHHHHhccCeeeehhHHh
Q psy5880 275 FEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 275 ~~~l~~GAd~V~vg~a~l 292 (328)
.+++++||++|.++++++
T Consensus 167 ~~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 167 QAFIQAGAIAVGLSGQLF 184 (187)
T ss_pred HHHHHCCCeEEEEehhcc
Confidence 999999999999999986
No 233
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.006 Score=53.73 Aligned_cols=137 Identities=16% Similarity=0.194 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
..+.|++...+++ +|.|.+|.- .+ ..+.++++.||+. ++-..+=+.|..+.+.+..+.+
T Consensus 72 ~p~~~i~~fa~ag--ad~It~H~E--~~---------~~~~r~i~~Ik~~--------G~kaGv~lnP~Tp~~~i~~~l~ 130 (220)
T COG0036 72 NPDRYIEAFAKAG--ADIITFHAE--AT---------EHIHRTIQLIKEL--------GVKAGLVLNPATPLEALEPVLD 130 (220)
T ss_pred CHHHHHHHHHHhC--CCEEEEEec--cC---------cCHHHHHHHHHHc--------CCeEEEEECCCCCHHHHHHHHh
Confidence 3466666666677 999998765 22 1245667777763 5566777888877554444444
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC--CccEEEecCCCCHHHHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG--KLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~--~ipvia~GGI~s~~da~~~l 278 (328)
. +|.|.+-.-. -|++|-...|..++.++++|+.... ++-|-.-||| +.+-+.++.
T Consensus 131 ~-------vD~VllMsVn---------------PGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~ 187 (220)
T COG0036 131 D-------VDLVLLMSVN---------------PGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLA 187 (220)
T ss_pred h-------CCEEEEEeEC---------------CCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHH
Confidence 3 5777654322 2355555567788999999888753 4667788998 678889999
Q ss_pred HhccCeeeehhHHhhcCchHHHHH
Q psy5880 279 KAGASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 279 ~~GAd~V~vg~a~l~~gp~~~~~i 302 (328)
++|||.+..||+++ +++++...+
T Consensus 188 ~AGad~~VaGSalF-~~~d~~~~i 210 (220)
T COG0036 188 AAGADVFVAGSALF-GADDYKATI 210 (220)
T ss_pred HcCCCEEEEEEEEe-CCccHHHHH
Confidence 99999999999875 556643333
No 234
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.0023 Score=56.34 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=56.9
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHH
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFE 276 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~ 276 (328)
-+|++| +++|+..+.=-+... | ||.. ..+-.+++.+.+..+ +|||.--||.++.|+.+
T Consensus 142 v~arrL--ee~GcaavMPl~aPI--------------G--Sg~G--~~n~~~l~iiie~a~--VPviVDAGiG~pSdAa~ 199 (262)
T COG2022 142 VLARRL--EEAGCAAVMPLGAPI--------------G--SGLG--LQNPYNLEIIIEEAD--VPVIVDAGIGTPSDAAQ 199 (262)
T ss_pred HHHHHH--HhcCceEeccccccc--------------c--CCcC--cCCHHHHHHHHHhCC--CCEEEeCCCCChhHHHH
Confidence 478999 999998884222111 1 1111 122355666777776 99999999999999999
Q ss_pred HHHhccCeeeehhHHh-hcCch
Q psy5880 277 KIKAGASLVQIYTSFV-YHGPP 297 (328)
Q Consensus 277 ~l~~GAd~V~vg~a~l-~~gp~ 297 (328)
+++.|||+|.+-|++- .++|-
T Consensus 200 aMElG~DaVL~NTAiA~A~DPv 221 (262)
T COG2022 200 AMELGADAVLLNTAIARAKDPV 221 (262)
T ss_pred HHhcccceeehhhHhhccCChH
Confidence 9999999999999884 24553
No 235
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.52 E-value=0.0058 Score=56.93 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 247 ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 247 ~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
+.++.+.+..+ +||+.-+||.+++|+.+++++|||+|.+.|++.
T Consensus 239 ~~i~~~~e~~~--vpVivdAGIg~~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 239 YTIRLIVEGAT--VPVLVDAGVGTASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred HHHHHHHHcCC--CcEEEeCCCCCHHHHHHHHHcCCCEEEEcceec
Confidence 55666666655 999999999999999999999999999999996
No 236
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.51 E-value=0.0028 Score=59.56 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=43.3
Q ss_pred HHHHHHHHHH-----Hc-CCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHH
Q psy5880 245 STELISEMYK-----LT-KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTR 301 (328)
Q Consensus 245 ~l~~v~~i~~-----~~-~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~ 301 (328)
.+....++.. .+ +.++-+|+-+||+|++|+..+..+|||+|-||+++|.. ++.-..
T Consensus 268 Dl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~-~dp~~~ 329 (338)
T PLN02460 268 DISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQ-DDPGKG 329 (338)
T ss_pred CHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCC-CCHHHH
Confidence 3555666655 33 24567899999999999999999999999999999954 654333
No 237
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.51 E-value=0.0088 Score=53.32 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHH
Q psy5880 247 ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTR 301 (328)
Q Consensus 247 ~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~ 301 (328)
+.++.+++... ++||++.|||++++++.++++.|||+|.||++++ +-+++.+.
T Consensus 162 ~~~~~ir~~~~-~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l-~~~~~~~~ 214 (223)
T PRK04302 162 DAVEAVKKVNP-DVKVLCGAGISTGEDVKAALELGADGVLLASGVV-KAKDPEAA 214 (223)
T ss_pred HHHHHHHhccC-CCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHh-CCcCHHHH
Confidence 44555665432 4999999999999999999999999999999998 43454333
No 238
>KOG4175|consensus
Probab=97.50 E-value=0.0065 Score=52.40 Aligned_cols=163 Identities=21% Similarity=0.227 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcc-cccEEEEc--cCCCCCc-------chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeC--CC
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVN--VSSPNTA-------NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIA--PD 189 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN--~scPn~~-------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~--~~ 189 (328)
+.+-+...+-+.. +.|.||+. ||-|..+ +.+.+.++-.+..+++.+++++.+ ....|+++--= |-
T Consensus 31 v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~---gvt~PIiLmgYYNPI 107 (268)
T KOG4175|consen 31 VSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQ---GVTCPIILMGYYNPI 107 (268)
T ss_pred HHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhccc---CcccceeeeecccHH
Confidence 4555555555555 59999976 4555543 223455666788899999988754 25778876421 11
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCcc---------------------------chhhhcc---cc--ccccCCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVD---------------------------RYEYLDA---RY--KEETGGLS 237 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~---------------------------~~~~~~~---~~--~~~~gg~s 237 (328)
+... .+.....+ .++|+.|+.+..-... +-+.... .+ -..+-|..
T Consensus 108 l~yG-~e~~iq~a--k~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvVSrmG~T 184 (268)
T KOG4175|consen 108 LRYG-VENYIQVA--KNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVVSRMGVT 184 (268)
T ss_pred Hhhh-HHHHHHHH--HhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEEEEecccc
Confidence 1110 12333444 4556666544322111 0000000 00 01122333
Q ss_pred CCc--CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 238 GEP--LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 238 g~~--~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
|.. +...--+.+.++|+..+ +-|+...-||+++|+..+.=.. ||.|.+|+.+.
T Consensus 185 G~~~svn~~l~~L~qrvrk~t~-dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv 239 (268)
T KOG4175|consen 185 GTRESVNEKLQSLLQRVRKATG-DTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIV 239 (268)
T ss_pred ccHHHHHHHHHHHHHHHHHhcC-CCceeEeeccCCHHHHHhhhhh-ccceEecHHHH
Confidence 321 11222456778888874 5999999999999999987666 99999999885
No 239
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.46 E-value=0.0055 Score=54.53 Aligned_cols=148 Identities=13% Similarity=0.074 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCC-EEEEeCCCCChhhHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPP-ILVKIAPDLSLDEKKD 197 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~P-v~vKl~~~~~~~~~~~ 197 (328)
.+...+.++++.+.+ ...+|+-+..|+. .+.++.+++... .+.| +.+=...-++.++
T Consensus 26 ~~~a~~~~~al~~gG--i~~iEiT~~tp~a------------~~~i~~l~~~~~-----~~~p~~~vGaGTVl~~e~--- 83 (222)
T PRK07114 26 VEVAKKVIKACYDGG--ARVFEFTNRGDFA------------HEVFAELVKYAA-----KELPGMILGVGSIVDAAT--- 83 (222)
T ss_pred HHHHHHHHHHHHHCC--CCEEEEeCCCCcH------------HHHHHHHHHHHH-----hhCCCeEEeeEeCcCHHH---
Confidence 345666666666665 8999988876663 233344433211 1234 3322222245332
Q ss_pred HHHHhccccCCccEEEEecCCccchh-----------h-hcc--ccccccCCCCCCcCch---HHHHHHHHHHHHcCCCc
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTVDRYE-----------Y-LDA--RYKEETGGLSGEPLRN---KSTELISEMYKLTKGKL 260 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~~~~~-----------~-~~~--~~~~~~gg~sg~~~~~---~~l~~v~~i~~~~~~~i 260 (328)
++.+ .++|+++++--+......+ + ..| -.....-|..---++| .+..+++.++.-++ ++
T Consensus 84 -a~~a--~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~p-~i 159 (222)
T PRK07114 84 -AALY--IQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPMP-WT 159 (222)
T ss_pred -HHHH--HHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHHHHhccCC-CC
Confidence 4556 7899999865443322100 0 000 0001111111111222 23577888887775 69
Q ss_pred cEEEecCCCC-HHHHHHHHHhccCeeeehhHHh
Q psy5880 261 PIIGVGGVFS-GKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 261 pvia~GGI~s-~~da~~~l~~GAd~V~vg~a~l 292 (328)
+++.+|||+- .+++.+++.+|+.+|.+|+.+.
T Consensus 160 ~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 160 KIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred eEEeCCCCCcchhcHHHHHhCCCEEEEEChhhc
Confidence 9999999995 6999999999999999999985
No 240
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.45 E-value=0.0018 Score=60.98 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=84.7
Q ss_pred HHHHHHHhhc-CccceEEeccCCCCCc------CccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCccccccc
Q psy5880 44 FWLLGILKFG-DVAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKK 116 (328)
Q Consensus 44 ~y~~~~~~l~-~~~~~v~~n~sspN~~------gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~ 116 (328)
++.+.++.+. ..+|.+++|.+||+.. |-.-+.+++.+.++++++++.- ..|+.+|+..+.+.
T Consensus 78 ~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-------d~pv~vKiR~G~~~---- 146 (321)
T PRK10415 78 EMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-------DVPVTLKIRTGWAP---- 146 (321)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-------CCceEEEEEccccC----
Confidence 4555555433 3469999999999731 3233457888999999887663 25888888654321
Q ss_pred chhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHH
Q psy5880 117 DIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKK 196 (328)
Q Consensus 117 ~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~ 196 (328)
......++++.++.++ +|+|.+|--. ..+.. .+..-.+.+..|++. .++||+. ..++.. ..
T Consensus 147 -~~~~~~~~a~~le~~G--~d~i~vh~rt--~~~~~---~G~a~~~~i~~ik~~-------~~iPVI~--nGgI~s--~~ 207 (321)
T PRK10415 147 -EHRNCVEIAQLAEDCG--IQALTIHGRT--RACLF---NGEAEYDSIRAVKQK-------VSIPVIA--NGDITD--PL 207 (321)
T ss_pred -CcchHHHHHHHHHHhC--CCEEEEecCc--ccccc---CCCcChHHHHHHHHh-------cCCcEEE--eCCCCC--HH
Confidence 1234567777777766 9999886321 11100 011113556666655 6789876 333321 34
Q ss_pred HHHHHhccccCCccEEEEe
Q psy5880 197 DIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~ 215 (328)
++.+.+ ...|+|+|.+.
T Consensus 208 da~~~l--~~~gadgVmiG 224 (321)
T PRK10415 208 KARAVL--DYTGADALMIG 224 (321)
T ss_pred HHHHHH--hccCCCEEEEC
Confidence 555556 56899999654
No 241
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.43 E-value=0.00091 Score=58.19 Aligned_cols=47 Identities=28% Similarity=0.506 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 245 STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
+++.++.+++..+ ++||++.||| +.+++.+++.+||+.|.++++++.
T Consensus 139 g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~ 185 (196)
T TIGR00693 139 GVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQ 185 (196)
T ss_pred CHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhC
Confidence 3566777766553 4999999999 599999999999999999999973
No 242
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.43 E-value=0.00065 Score=60.57 Aligned_cols=84 Identities=20% Similarity=0.141 Sum_probs=65.9
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++|+.+ .+.|+|.+++..=.. ..| .+.+++.++++.+. +|+...|||+|.+|
T Consensus 37 dP~~~a~~~--~~~g~~~l~ivDLd~----------------~~~---~~~n~~~i~~i~~~----~~v~vgGGirs~e~ 91 (221)
T TIGR00734 37 SPDDAAKVI--EEIGARFIYIADLDR----------------IVG---LGDNFSLLSKLSKR----VELIADCGVRSPED 91 (221)
T ss_pred CHHHHHHHH--HHcCCCEEEEEEccc----------------ccC---CcchHHHHHHHHhh----CcEEEcCccCCHHH
Confidence 578899999 899999998864211 111 23457888888775 58999999999999
Q ss_pred HHHHHH--hccCeeeehhHHhhcCchHHHHHH
Q psy5880 274 AFEKIK--AGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 274 a~~~l~--~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
+.+++. .||+-|.+||..+ ++|++++++.
T Consensus 92 ~~~~~~~l~~a~rvvigT~a~-~~p~~l~~~~ 122 (221)
T TIGR00734 92 LETLPFTLEFASRVVVATETL-DITELLRECY 122 (221)
T ss_pred HHHHHhhhccceEEeecChhh-CCHHHHHHhh
Confidence 999976 3699999999997 5799988764
No 243
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.42 E-value=0.00059 Score=61.68 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=57.0
Q ss_pred HH-HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 195 KK-DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 195 ~~-~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+. ++++.+ .+. +..|.+++-... |-+.|+ .++.++++++.++ +|||++|||.+.+|
T Consensus 159 ~~~e~~~~~--~~~-~~~il~TdI~rD-------------Gtl~G~-----dlel~~~l~~~~~--ipVIASGGv~s~eD 215 (253)
T TIGR02129 159 LNAETLEEL--SKY-CDEFLIHAADVE-------------GLCKGI-----DEELVSKLGEWSP--IPITYAGGAKSIDD 215 (253)
T ss_pred hHHHHHHHH--Hhh-CCEEEEeeeccc-------------CccccC-----CHHHHHHHHhhCC--CCEEEECCCCCHHH
Confidence 55 788888 677 888877764332 445665 3688899988876 99999999999999
Q ss_pred HHHHHHh--ccCeeeehhHHh
Q psy5880 274 AFEKIKA--GASLVQIYTSFV 292 (328)
Q Consensus 274 a~~~l~~--GAd~V~vg~a~l 292 (328)
+.++... |...+.+|++++
T Consensus 216 i~~l~~~~~g~~~aIvG~Alf 236 (253)
T TIGR02129 216 LDLVDELSKGKVDLTIGSALD 236 (253)
T ss_pred HHHHHHhcCCCCcEEeeehHH
Confidence 9988554 544577898885
No 244
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.40 E-value=0.0004 Score=62.18 Aligned_cols=72 Identities=25% Similarity=0.273 Sum_probs=52.0
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
+.++++.+ .+. +..+.+++-... |...|+. .+.+.+. ++|||++|||++.+|+
T Consensus 145 ~~~~~~~~--~~~-~~~ii~t~i~~d-------------Gt~~G~d----------~l~~~~~-~~pviasGGv~~~~Dl 197 (228)
T PRK04128 145 VEDAYEML--KNY-VNRFIYTSIERD-------------GTLTGIE----------EIERFWG-DEEFIYAGGVSSAEDV 197 (228)
T ss_pred HHHHHHHH--HHH-hCEEEEEeccch-------------hcccCHH----------HHHHhcC-CCCEEEECCCCCHHHH
Confidence 56777777 666 777776653221 3345532 2222222 4999999999999999
Q ss_pred HHHHHhccCeeeehhHHhh
Q psy5880 275 FEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 275 ~~~l~~GAd~V~vg~a~l~ 293 (328)
.++...|+++|.+|++++.
T Consensus 198 ~~l~~~g~~gvivg~al~~ 216 (228)
T PRK04128 198 KKLAEIGFSGVIIGKALYE 216 (228)
T ss_pred HHHHHCCCCEEEEEhhhhc
Confidence 9999999999999999964
No 245
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.012 Score=51.55 Aligned_cols=139 Identities=15% Similarity=0.172 Sum_probs=88.3
Q ss_pred HHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhcc
Q psy5880 125 SVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLD 204 (328)
Q Consensus 125 ~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~ 204 (328)
.++.+..++ +|++.+ +|--. ..-+.++++.+.+ .++-+.+-+-..++ +.+.++.+
T Consensus 72 e~~ma~~aG--Ad~~tV--~g~A~-----------~~TI~~~i~~A~~-----~~~~v~iDl~~~~~---~~~~~~~l-- 126 (217)
T COG0269 72 EARMAFEAG--ADWVTV--LGAAD-----------DATIKKAIKVAKE-----YGKEVQIDLIGVWD---PEQRAKWL-- 126 (217)
T ss_pred HHHHHHHcC--CCEEEE--EecCC-----------HHHHHHHHHHHHH-----cCCeEEEEeecCCC---HHHHHHHH--
Confidence 345555555 999985 33111 1223333443322 46778888877666 56777888
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCe
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASL 284 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~ 284 (328)
.++|+|.+.+|-..-.. ..|.+ .+++.+..+++..+..+.|...||| +++++..+...|++.
T Consensus 127 ~~~gvd~~~~H~g~D~q-----------~~G~~------~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i~~~~~~~~~i 188 (217)
T COG0269 127 KELGVDQVILHRGRDAQ-----------AAGKS------WGEDDLEKIKKLSDLGAKVAVAGGI-TPEDIPLFKGIGADI 188 (217)
T ss_pred HHhCCCEEEEEecccHh-----------hcCCC------ccHHHHHHHHHhhccCceEEEecCC-CHHHHHHHhcCCCCE
Confidence 77999999888432210 11221 1245566677766544789999998 799999999999999
Q ss_pred eeehhHHhh-cCc-hHHHHHHHHH
Q psy5880 285 VQIYTSFVY-HGP-PLVTRIKSEL 306 (328)
Q Consensus 285 V~vg~a~l~-~gp-~~~~~i~~~l 306 (328)
|.+||++-. .+| ..++++++.+
T Consensus 189 vIvGraIt~a~dp~~~a~~~~~~i 212 (217)
T COG0269 189 VIVGRAITGAKDPAEAARKFKEEI 212 (217)
T ss_pred EEECchhcCCCCHHHHHHHHHHHH
Confidence 999999952 233 2344444443
No 246
>KOG2550|consensus
Probab=97.38 E-value=0.0012 Score=62.49 Aligned_cols=123 Identities=20% Similarity=0.200 Sum_probs=77.4
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC-CChhhHHHHHHHhccccCCccEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD-LSLDEKKDIADVVLDSKCKVDGLI 213 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~-~~~~~~~~~a~~l~~~~~G~d~i~ 213 (328)
+.|+|.|.-| |. +-.+..+.++.||+.. ++..|+ ..+ ++ .+-++.| ..+|+|++-
T Consensus 263 GvdvviLDSS--qG-------nS~~qiemik~iK~~y------P~l~Vi---aGNVVT----~~qa~nL--I~aGaDgLr 318 (503)
T KOG2550|consen 263 GVDVVILDSS--QG-------NSIYQLEMIKYIKETY------PDLQII---AGNVVT----KEQAANL--IAAGADGLR 318 (503)
T ss_pred CCcEEEEecC--CC-------cchhHHHHHHHHHhhC------CCceee---ccceee----HHHHHHH--HHccCceeE
Confidence 4899988766 32 2234567888888763 344543 333 23 3456777 899999997
Q ss_pred EecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 214 VSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 214 ~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
+.=...+ ..+....+ -.|.|- -.+...+.+.....+ +|||+-|||.+.-++.+++.+||+.||+|.-+
T Consensus 319 VGMGsGS-iCiTqevm------a~GrpQ-~TAVy~va~~A~q~g--vpviADGGiq~~Ghi~KAl~lGAstVMmG~lL 386 (503)
T KOG2550|consen 319 VGMGSGS-ICITQKVM------ACGRPQ-GTAVYKVAEFANQFG--VPCIADGGIQNVGHVVKALGLGASTVMMGGLL 386 (503)
T ss_pred eccccCc-eeeeceee------eccCCc-ccchhhHHHHHHhcC--CceeecCCcCccchhHhhhhcCchhheeccee
Confidence 7422211 00000000 011110 112344555666666 99999999999999999999999999999754
No 247
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.38 E-value=0.0046 Score=58.17 Aligned_cols=146 Identities=16% Similarity=0.118 Sum_probs=84.4
Q ss_pred HHHHHHHhhcCc-cceEEeccCCCCCc------CccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCccccccc
Q psy5880 44 FWLLGILKFGDV-AHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKK 116 (328)
Q Consensus 44 ~y~~~~~~l~~~-~~~v~~n~sspN~~------gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~ 116 (328)
++.+.++.+... .|.+++|.+||+.. |-.=+.+++.+.+++.++++.- ..|+.+|+..+.+-.
T Consensus 68 ~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~-------~~PVsvKiR~g~~~~--- 137 (318)
T TIGR00742 68 DLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAV-------NIPVTVKHRIGIDPL--- 137 (318)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHh-------CCCeEEEEecCCCCc---
Confidence 455555544433 69999999999774 3333447888888888888764 369999998764311
Q ss_pred chhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhh---hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChh
Q psy5880 117 DIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQ---AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLD 193 (328)
Q Consensus 117 ~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~---~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~ 193 (328)
.+.+...++++.++.++ ++.|.+|--.+...+..... .+..-.+.+..+++.. .++||+. ..++..
T Consensus 138 ~~~~~~~~~~~~l~~~G--~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~------~~ipVi~--NGdI~s- 206 (318)
T TIGR00742 138 DSYEFLCDFVEIVSGKG--CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDF------PHLTIEI--NGGIKN- 206 (318)
T ss_pred chHHHHHHHHHHHHHcC--CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhC------CCCcEEE--ECCcCC-
Confidence 11234556777776666 99999885432111111000 1111223444555541 3789885 344332
Q ss_pred hHHHHHHHhccccCCccEEEEe
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
..++.+.+ . |+|+|.+.
T Consensus 207 -~~da~~~l--~--g~dgVMig 223 (318)
T TIGR00742 207 -SEQIKQHL--S--HVDGVMVG 223 (318)
T ss_pred -HHHHHHHH--h--CCCEEEEC
Confidence 34444444 3 89999654
No 248
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.37 E-value=0.038 Score=50.64 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=66.6
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.++||++|-+...+.+++...++.+ ...|-.-+++.-+... .+++.+.....+..+..+++...
T Consensus 133 ~gkPV~lk~G~~~s~~e~~~A~e~i--~~~Gn~~i~L~~rG~~--------------t~~~Y~~~~vdl~~i~~lk~~~~ 196 (266)
T PRK13398 133 TKKPILLKRGMSATLEEWLYAAEYI--MSEGNENVVLCERGIR--------------TFETYTRNTLDLAAVAVIKELSH 196 (266)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHH--HhcCCCeEEEEECCCC--------------CCCCCCHHHHHHHHHHHHHhccC
Confidence 5899999998887888899999988 8888866655433110 01222223456777888887775
Q ss_pred CCccEEE-ecCCCC-----HHHHHHHHHhccCeeeehhH
Q psy5880 258 GKLPIIG-VGGVFS-----GKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 258 ~~ipvia-~GGI~s-----~~da~~~l~~GAd~V~vg~a 290 (328)
+||+. +.-... +..+..++.+||+++++=+-
T Consensus 197 --~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H 233 (266)
T PRK13398 197 --LPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVH 233 (266)
T ss_pred --CCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEecc
Confidence 99998 443334 67788888999997777653
No 249
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.36 E-value=0.014 Score=52.77 Aligned_cols=93 Identities=17% Similarity=0.056 Sum_probs=63.8
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecC-CccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNT-TVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT 256 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~-~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~ 256 (328)
.++||++|-....+.+++...++.+ .+.|..-|.+.-| +.+++ .+......+..+..+++..
T Consensus 121 tgkPVilk~G~~~t~~e~~~A~e~i--~~~Gn~~i~L~eRg~~~Y~---------------~~~~n~~dl~ai~~lk~~~ 183 (250)
T PRK13397 121 IDKPILFKRGLMATIEEYLGALSYL--QDTGKSNIILCERGVRGYD---------------VETRNMLDIMAVPIIQQKT 183 (250)
T ss_pred cCCeEEEeCCCCCCHHHHHHHHHHH--HHcCCCeEEEEccccCCCC---------------CccccccCHHHHHHHHHHh
Confidence 5789999998788888999999999 8899876666542 22221 1111123466777788777
Q ss_pred CCCccEEEe----cCCCC--HHHHHHHHHhccCeeeehh
Q psy5880 257 KGKLPIIGV----GGVFS--GKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 257 ~~~ipvia~----GGI~s--~~da~~~l~~GAd~V~vg~ 289 (328)
+ +|||.. +|.+. +.-+..++.+|||++++=+
T Consensus 184 ~--lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~ 220 (250)
T PRK13397 184 D--LPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEV 220 (250)
T ss_pred C--CCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEe
Confidence 6 998874 44433 2456778889999776654
No 250
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=97.35 E-value=0.012 Score=53.79 Aligned_cols=125 Identities=15% Similarity=0.137 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+++++.++++.. ++..+-++++ . +++.-.+.+++||+. ++ .++++.+.....++.++..++++.
T Consensus 87 ~~~~~~~~~~~~~G~~~~KiKvg--~--------~~~~d~~~v~~vr~~---~g--~~~~l~vDan~~~~~~~a~~~~~~ 151 (265)
T cd03315 87 AEVAEEARRALEAGFRTFKLKVG--R--------DPARDVAVVAALREA---VG--DDAELRVDANRGWTPKQAIRALRA 151 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEEecC--C--------CHHHHHHHHHHHHHh---cC--CCCEEEEeCCCCcCHHHHHHHHHH
Confidence 444445444433 5888888765 1 123445677777776 33 467888888888888889999999
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+ .+.|+++|-- | ..+..++..+++++.++ +||++.+.+.+..++.++++.+
T Consensus 152 l--~~~~i~~iEe-------P------------------~~~~d~~~~~~l~~~~~--ipia~dE~~~~~~~~~~~i~~~ 202 (265)
T cd03315 152 L--EDLGLDYVEQ-------P------------------LPADDLEGRAALARATD--TPIMADESAFTPHDAFRELALG 202 (265)
T ss_pred H--HhcCCCEEEC-------C------------------CCcccHHHHHHHHhhCC--CCEEECCCCCCHHHHHHHHHhC
Confidence 9 8888877721 1 11123466778888887 9999999999999999999876
Q ss_pred -cCeeeehhHH
Q psy5880 282 -ASLVQIYTSF 291 (328)
Q Consensus 282 -Ad~V~vg~a~ 291 (328)
+|.|++=-..
T Consensus 203 ~~d~v~~k~~~ 213 (265)
T cd03315 203 AADAVNIKTAK 213 (265)
T ss_pred CCCEEEEeccc
Confidence 8999875443
No 251
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=97.33 E-value=0.0089 Score=52.86 Aligned_cols=137 Identities=18% Similarity=0.180 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC----C--hhhH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL----S--LDEK 195 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~----~--~~~~ 195 (328)
...+++.+.+++ +|++.+|..+.. +.+..+++.+++ .+.++++=+.+.. . .+.+
T Consensus 69 ~~~~~~~~~~~g--ad~vtvh~e~g~----------~~l~~~i~~~~~--------~g~~~~v~~~~~~~~~~~~~~~~~ 128 (215)
T PRK13813 69 NRLICEAVFEAG--AWGIIVHGFTGR----------DSLKAVVEAAAE--------SGGKVFVVVEMSHPGALEFIQPHA 128 (215)
T ss_pred HHHHHHHHHhCC--CCEEEEcCcCCH----------HHHHHHHHHHHh--------cCCeEEEEEeCCCCCCCCCHHHHH
Confidence 344445555566 999998776321 124445555443 3567755333221 1 2345
Q ss_pred HHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH-HHH
Q psy5880 196 KDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG-KDA 274 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~-~da 274 (328)
..++... .+.|+++..+..+. ++.++++++..+.++.+ ..|||+.. ..+
T Consensus 129 ~~v~~m~--~e~G~~g~~~~~~~---------------------------~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~ 178 (215)
T PRK13813 129 DKLAKLA--QEAGAFGVVAPATR---------------------------PERVRYIRSRLGDELKI-ISPGIGAQGGKA 178 (215)
T ss_pred HHHHHHH--HHhCCCeEEECCCc---------------------------chhHHHHHHhcCCCcEE-EeCCcCCCCCCH
Confidence 5666666 78888877533211 24456777766532334 77999875 357
Q ss_pred HHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHH
Q psy5880 275 FEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELL 310 (328)
Q Consensus 275 ~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m 310 (328)
.+++++|||.+.+||+++ +.++ +.+..+.+.+.|
T Consensus 179 ~~~~~aGad~iV~Gr~I~-~~~d-~~~~~~~l~~~~ 212 (215)
T PRK13813 179 ADAIKAGADYVIVGRSIY-NAAD-PREAAKAINEEI 212 (215)
T ss_pred HHHHHcCCCEEEECcccC-CCCC-HHHHHHHHHHHH
Confidence 788899999999999986 4455 344444444444
No 252
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=97.29 E-value=0.0077 Score=57.04 Aligned_cols=174 Identities=20% Similarity=0.141 Sum_probs=95.7
Q ss_pred HHHHHHhcccccEEEEccCC-CCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe-CCC-------------C
Q psy5880 126 VKGILKFGDVAHYFVVNVSS-PNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI-APD-------------L 190 (328)
Q Consensus 126 ~~~a~~~~~~~d~ieiN~sc-Pn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl-~~~-------------~ 190 (328)
++.+.+++ +|++-+++.. |..+. .. .+...+.+..|.+.++. .++|+++=+ ++. .
T Consensus 112 ve~a~~~G--AdAVk~lv~~~~d~~~--~~--~~~~~~~l~rv~~ec~~----~giPlllE~l~y~~~~~~~~~~~~a~~ 181 (340)
T PRK12858 112 VRRIKEAG--ADAVKLLLYYRPDEDD--AI--NDRKHAFVERVGAECRA----NDIPFFLEPLTYDGKGSDKKAEEFAKV 181 (340)
T ss_pred HHHHHHcC--CCEEEEEEEeCCCcch--HH--HHHHHHHHHHHHHHHHH----cCCceEEEEeccCCCcccccccccccc
Confidence 45566666 8998876542 22110 00 11223334445455443 689998853 321 1
Q ss_pred ChhhHHHHHHHhccc--cCCccEEEEecCCccchhhhccccccccCCCCCCcCc--hHHHHHHHHHHHHcCCCccEEE-e
Q psy5880 191 SLDEKKDIADVVLDS--KCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLR--NKSTELISEMYKLTKGKLPIIG-V 265 (328)
Q Consensus 191 ~~~~~~~~a~~l~~~--~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~--~~~l~~v~~i~~~~~~~ipvia-~ 265 (328)
..+-+...++.+ . +.|+|.+-+--+... ....|.-.+.... ....+..+++.+..+ +|+|. +
T Consensus 182 ~p~~V~~a~r~~--~~~elGaDvlKve~p~~~---------~~veg~~~~~~~~~~~~~~~~f~~~~~a~~--~P~vvls 248 (340)
T PRK12858 182 KPEKVIKTMEEF--SKPRYGVDVLKVEVPVDM---------KFVEGFDGFEEAYTQEEAFKLFREQSDATD--LPFIFLS 248 (340)
T ss_pred CHHHHHHHHHHH--hhhccCCeEEEeeCCCCc---------ccccccccccccccHHHHHHHHHHHHhhCC--CCEEEEC
Confidence 223455667777 6 599998755322110 0000100111111 122345556666655 78765 7
Q ss_pred cCCCCHHHHHHHH----Hhcc--CeeeehhHHhhcCchH-HHHHHHHHHHHHHHhCCCCHHHHhc
Q psy5880 266 GGVFSGKDAFEKI----KAGA--SLVQIYTSFVYHGPPL-VTRIKSELEELLQKEGYNSVSQAVG 323 (328)
Q Consensus 266 GGI~s~~da~~~l----~~GA--d~V~vg~a~l~~gp~~-~~~i~~~l~~~m~~~g~~si~e~~G 323 (328)
||+ +.+++.+.+ ++|| +.|.+||++..+.-.. ...=.+..++||...|..+|++|--
T Consensus 249 gG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v~~~~~~~~~~~~~~l~~~g~~~~~~l~~ 312 (340)
T PRK12858 249 AGV-SPELFRRTLEFACEAGADFSGVLCGRATWQDGIEPYAAEGEEARRAWLNTEGVANITRLNE 312 (340)
T ss_pred CCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhhhhccccCCCHHHHHHHHHHHhHHHHHHHHH
Confidence 887 666666544 5899 9999999997543222 1222345688999999988888754
No 253
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.26 E-value=0.0025 Score=56.39 Aligned_cols=81 Identities=7% Similarity=0.121 Sum_probs=54.2
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCe
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASL 284 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~ 284 (328)
.+.|+|++.++.-+.... ..+ ...+.+++.++++.+... ++||++-|||+ .+++.+++.+||+.
T Consensus 119 ~~~gaDYi~lgpvf~T~t---------K~~-----~~~~~G~~~l~~~~~~~~-~~PV~AiGGI~-~~ni~~l~~~Ga~G 182 (211)
T PRK03512 119 LAARPSYIALGHVFPTQT---------KQM-----PSAPQGLAQLARHVERLA-DYPTVAIGGIS-LERAPAVLATGVGS 182 (211)
T ss_pred hhcCCCEEEECCccCCCC---------CCC-----CCCCCCHHHHHHHHHhcC-CCCEEEECCCC-HHHHHHHHHcCCCE
Confidence 578999997764322100 000 011234555666665531 39999999996 99999999999999
Q ss_pred eeehhHHhhcCchHHHHH
Q psy5880 285 VQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 285 V~vg~a~l~~gp~~~~~i 302 (328)
|.+.++++. .+++...+
T Consensus 183 iAvisai~~-~~d~~~~~ 199 (211)
T PRK03512 183 IAVVSAITQ-AADWRAAT 199 (211)
T ss_pred EEEhhHhhC-CCCHHHHH
Confidence 999999974 35544443
No 254
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=97.24 E-value=0.0056 Score=55.02 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=79.4
Q ss_pred HHHHHHHhhcCccceEEeccCCCCCc------CccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccc
Q psy5880 44 FWLLGILKFGDVAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKD 117 (328)
Q Consensus 44 ~y~~~~~~l~~~~~~v~~n~sspN~~------gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~ 117 (328)
++.+.++.+..+.+.+++|.+||+.. |-.=+.+++.+.++++++++. ..|+.+|+.++.+
T Consensus 86 ~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--------~~pVsvKir~g~~------ 151 (233)
T cd02911 86 PLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET--------GVPVSVKIRAGVD------ 151 (233)
T ss_pred HHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--------CCCEEEEEcCCcC------
Confidence 56666666666679999999999872 333445788899999998864 2699999987642
Q ss_pred hhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHH
Q psy5880 118 IADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKD 197 (328)
Q Consensus 118 ~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ 197 (328)
....++++.++.++ +|+|. .++-.. +. . -+ . +.|++.+ .++||+. ..++. ...+
T Consensus 152 --~~~~~la~~l~~aG--~d~ih--v~~~~~-g~-~-ad----~---~~I~~i~------~~ipVIg--nGgI~--s~ed 205 (233)
T cd02911 152 --VDDEELARLIEKAG--ADIIH--VDAMDP-GN-H-AD----L---KKIRDIS------TELFIIG--NNSVT--TIES 205 (233)
T ss_pred --cCHHHHHHHHHHhC--CCEEE--ECcCCC-CC-C-Cc----H---HHHHHhc------CCCEEEE--ECCcC--CHHH
Confidence 23566777777776 89764 432111 10 0 01 1 2333331 3578764 23332 2445
Q ss_pred HHHHhccccCCccEEEEe
Q psy5880 198 IADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~ 215 (328)
..+.+ +.|+|+|.+.
T Consensus 206 a~~~l---~~GaD~VmiG 220 (233)
T cd02911 206 AKEMF---SYGADMVSVA 220 (233)
T ss_pred HHHHH---HcCCCEEEEc
Confidence 54545 4899999654
No 255
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=97.22 E-value=0.043 Score=50.11 Aligned_cols=93 Identities=20% Similarity=0.146 Sum_probs=65.2
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecC-CccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNT-TVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT 256 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~-~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~ 256 (328)
.++||++|-....+.+++...++.+ .+.|.+-|++.-+ +.. |.+.+.....+..+..+++..
T Consensus 131 ~gkPVilk~G~~~t~~e~~~Ave~i--~~~Gn~~i~l~~rG~s~---------------y~~~~~~~~dl~~i~~lk~~~ 193 (260)
T TIGR01361 131 QGKPVLLKRGMGNTIEEWLYAAEYI--LSSGNGNVILCERGIRT---------------FEKATRNTLDLSAVPVLKKET 193 (260)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHH--HHcCCCcEEEEECCCCC---------------CCCCCcCCcCHHHHHHHHHhh
Confidence 5789999998887888999999999 8899866665433 222 111122235678888888877
Q ss_pred CCCccEEE----ecCCCC--HHHHHHHHHhccCeeeehh
Q psy5880 257 KGKLPIIG----VGGVFS--GKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 257 ~~~ipvia----~GGI~s--~~da~~~l~~GAd~V~vg~ 289 (328)
+ +||+. ++|.++ ..-+..++..||+++++=+
T Consensus 194 ~--~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~ 230 (260)
T TIGR01361 194 H--LPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEV 230 (260)
T ss_pred C--CCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEe
Confidence 6 99999 444222 5556678889999766654
No 256
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.22 E-value=0.0022 Score=62.05 Aligned_cols=68 Identities=12% Similarity=0.247 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHcC-------CCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHh
Q psy5880 243 NKSTELISEMYKLTK-------GKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKE 313 (328)
Q Consensus 243 ~~~l~~v~~i~~~~~-------~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~ 313 (328)
|.+++.++++++.+. .++||++.||| +.+++.+++++||+.|.+-|+++. -++ +....+.+...|..+
T Consensus 341 p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GVAVVSAI~~-A~D-P~aa~~~l~~~~~~~ 415 (437)
T PRK12290 341 PQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGVSSLAVVRAITL-AED-PQLVIEFFDQVMAEN 415 (437)
T ss_pred CCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCCCEEEEehHhhc-CCC-HHHHHHHHHHHHhhc
Confidence 455677776666552 14999999999 999999999999999999999973 344 333333444444433
No 257
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.22 E-value=0.025 Score=52.29 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=57.1
Q ss_pred HHHHHHHhccccCCccEEEEec-CCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEec--CCCCH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSN-TTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVG--GVFSG 271 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n-~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~G--GI~s~ 271 (328)
..+..+.. .+.|+|++-++- +.. |.+.+. .+..++.++++++.++ +|+++-| || +.
T Consensus 155 ~eea~~f~--~~tg~DyLAvaiG~~h--------------g~~~~~--~~l~~~~L~~i~~~~~--iPlV~hG~SGI-~~ 213 (281)
T PRK06806 155 TTEAKRFA--EETDVDALAVAIGNAH--------------GMYNGD--PNLRFDRLQEINDVVH--IPLVLHGGSGI-SP 213 (281)
T ss_pred HHHHHHHH--HhhCCCEEEEccCCCC--------------CCCCCC--CccCHHHHHHHHHhcC--CCEEEECCCCC-CH
Confidence 44544444 567999997742 222 112111 2356788999999987 9999999 87 67
Q ss_pred HHHHHHHHhccCeeeehhHHhh
Q psy5880 272 KDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 272 ~da~~~l~~GAd~V~vg~a~l~ 293 (328)
+++.+++.+|++-|-+.|++..
T Consensus 214 e~~~~~i~~G~~kinv~T~i~~ 235 (281)
T PRK06806 214 EDFKKCIQHGIRKINVATATFN 235 (281)
T ss_pred HHHHHHHHcCCcEEEEhHHHHH
Confidence 8899999999999999999964
No 258
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.20 E-value=0.0068 Score=53.17 Aligned_cols=129 Identities=13% Similarity=0.185 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.++++.+.+..++ +|++.+|-.- . .+.++.+++. .+.+++..++..... + .+. .
T Consensus 61 ~~~~i~~ia~~~~--~d~Vqlhg~e----------~----~~~~~~l~~~-------~~~~~i~~i~~~~~~-~-~~~-~ 114 (203)
T cd00405 61 DLEEILEIAEELG--LDVVQLHGDE----------S----PEYCAQLRAR-------LGLPVIKAIRVKDEE-D-LEK-A 114 (203)
T ss_pred CHHHHHHHHHhcC--CCEEEECCCC----------C----HHHHHHHHhh-------cCCcEEEEEecCChh-h-HHH-h
Confidence 3556666666666 8999875431 0 1233444433 345777334332111 1 122 2
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.. ...|+|++.+-+.+.. ..|| +|. +..++.+++++ .+ +|+++.||| |++.+.+++..
T Consensus 115 ~~--~~~~aD~il~dt~~~~-----------~~Gg-~g~---~~~~~~l~~~~--~~--~PvilaGGI-~~~Nv~~~i~~ 172 (203)
T cd00405 115 AA--YAGEVDAILLDSKSGG-----------GGGG-TGK---TFDWSLLRGLA--SR--KPVILAGGL-TPDNVAEAIRL 172 (203)
T ss_pred hh--ccccCCEEEEcCCCCC-----------CCCC-Ccc---eEChHHhhccc--cC--CCEEEECCC-ChHHHHHHHHh
Confidence 33 5678999865332211 1122 222 23345555554 34 999999999 99999999999
Q ss_pred c-cCeeeehhHHhhcCchH
Q psy5880 281 G-ASLVQIYTSFVYHGPPL 298 (328)
Q Consensus 281 G-Ad~V~vg~a~l~~gp~~ 298 (328)
| +++|.+.|++.. .|..
T Consensus 173 ~~~~gvdv~S~ie~-~pg~ 190 (203)
T cd00405 173 VRPYGVDVSSGVET-SPGI 190 (203)
T ss_pred cCCCEEEcCCcccC-CCCC
Confidence 9 999999999974 3443
No 259
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=97.19 E-value=0.063 Score=49.68 Aligned_cols=180 Identities=12% Similarity=0.142 Sum_probs=95.8
Q ss_pred CcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEE-----c
Q psy5880 68 TANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVV-----N 142 (328)
Q Consensus 68 ~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~iei-----N 142 (328)
+.|+++.+. -.+.++++.++..... ...|+.+ |..-| .....+...++...+++ +.+|.| +
T Consensus 52 s~G~pD~~~-~~~~e~~~~~~~I~~a----~~~Pv~~----D~d~G---g~~~~v~r~V~~l~~aG--vaGi~iEDq~~p 117 (285)
T TIGR02320 52 SRGVPDIEE-ASWTQRLDVVEFMFDV----TTKPIIL----DGDTG---GNFEHFRRLVRKLERRG--VSAVCIEDKLGL 117 (285)
T ss_pred HCCCCCcCc-CCHHHHHHHHHHHHhh----cCCCEEE----ecCCC---CCHHHHHHHHHHHHHcC--CeEEEEeccCCC
Confidence 357665542 2345555554433321 1245433 33222 12344555555555555 777766 1
Q ss_pred cCCCCCcch--hhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC---CChhhHHHHHHHhccccCCccEEEEecC
Q psy5880 143 VSSPNTANL--RKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD---LSLDEKKDIADVVLDSKCKVDGLIVSNT 217 (328)
Q Consensus 143 ~scPn~~g~--~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~---~~~~~~~~~a~~l~~~~~G~d~i~~~n~ 217 (328)
--|.+..+. ...-..+...+.++++++++. ..+++|+.+.-.. ...++..+-++.. .++|+|+|.+...
T Consensus 118 k~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~----~~~~~IiARTDa~~~~~~~~eAi~Ra~ay--~eAGAD~ifv~~~ 191 (285)
T TIGR02320 118 KKNSLFGNDVAQPQASVEEFCGKIRAGKDAQT----TEDFMIIARVESLILGKGMEDALKRAEAY--AEAGADGIMIHSR 191 (285)
T ss_pred ccccccCCCCcccccCHHHHHHHHHHHHHhcc----CCCeEEEEecccccccCCHHHHHHHHHHH--HHcCCCEEEecCC
Confidence 123222111 111233445555556555531 1578999994322 2345677778888 9999999977631
Q ss_pred CccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC---CccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 218 TVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG---KLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 218 ~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~---~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
... .+.++++.+.++. .+|++.+.+-.-.-.+.++-++|...|..+..++
T Consensus 192 ~~~-------------------------~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~ 244 (285)
T TIGR02320 192 KKD-------------------------PDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLL 244 (285)
T ss_pred CCC-------------------------HHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHH
Confidence 110 1333444444421 4788876542222256777789999999987775
No 260
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.19 E-value=0.041 Score=48.85 Aligned_cols=149 Identities=19% Similarity=0.157 Sum_probs=86.5
Q ss_pred cccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCc-chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEE
Q psy5880 105 KIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTA-NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPIL 183 (328)
Q Consensus 105 ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~-g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~ 183 (328)
.+|.++|+-.|. .+..| ..|... ++++|-+|..|=-.- ..... .....|+++--+ .++ .++-++
T Consensus 85 ~iPvGvNVLrNd----~vaA~-~IA~a~--gA~FIRVN~~tg~~~tdqGii--eg~A~e~~r~r~----~L~--~~v~vl 149 (263)
T COG0434 85 SIPVGVNVLRND----AVAAL-AIAYAV--GADFIRVNVLTGAYATDQGII--EGNAAELARYRA----RLG--SRVKVL 149 (263)
T ss_pred cccceeeeeccc----cHHHH-HHHHhc--CCCEEEEEeeeceEeccccee--cchHHHHHHHHH----hcc--CCcEEE
Confidence 455666665442 22222 223333 489999997651110 00111 122333333222 222 234444
Q ss_pred E----EeCCCCChhhHHHHHHH-hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC
Q psy5880 184 V----KIAPDLSLDEKKDIADV-VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG 258 (328)
Q Consensus 184 v----Kl~~~~~~~~~~~~a~~-l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~ 258 (328)
. |=+..+....+.+.++- + +..++|++++++...+ . +..++.++.+++..+
T Consensus 150 ADv~VKHa~~l~~~~~~~~v~dtv--er~~aDaVI~tG~~TG------------------~---~~d~~el~~a~~~~~- 205 (263)
T COG0434 150 ADVHVKHAVHLGNRSLEEAVKDTV--ERGLADAVIVTGSRTG------------------S---PPDLEELKLAKEAVD- 205 (263)
T ss_pred eecchhcccccCCcCHHHHHHHHH--HccCCCEEEEecccCC------------------C---CCCHHHHHHHHhccC-
Confidence 3 43333332245555555 5 6778999999875322 1 223577788888887
Q ss_pred CccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcC
Q psy5880 259 KLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHG 295 (328)
Q Consensus 259 ~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~g 295 (328)
.||++.-|+ +++-+.++++. ||.+.+||.+-..|
T Consensus 206 -~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK~~G 239 (263)
T COG0434 206 -TPVLVGSGV-NPENIEELLKI-ADGVIVGTSLKKGG 239 (263)
T ss_pred -CCEEEecCC-CHHHHHHHHHH-cCceEEEEEEccCC
Confidence 999988887 78999999988 99999999986544
No 261
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=97.18 E-value=0.064 Score=50.70 Aligned_cols=93 Identities=18% Similarity=0.181 Sum_probs=64.8
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecC-CccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNT-TVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT 256 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~-~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~ 256 (328)
.++||++|-....+.+++...++.+ ...|-.-+++.-+ +.. |.+.......+..+..+++..
T Consensus 199 ~~kPViLk~G~~~ti~E~l~A~e~i--~~~GN~~viL~erG~~t---------------f~~~~~~~ldl~ai~~lk~~~ 261 (335)
T PRK08673 199 TNKPVLLKRGMSATIEEWLMAAEYI--LAEGNPNVILCERGIRT---------------FETATRNTLDLSAVPVIKKLT 261 (335)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHH--HHcCCCeEEEEECCCCC---------------CCCcChhhhhHHHHHHHHHhc
Confidence 5789999998887888999999999 8888877766543 211 111222335677888888877
Q ss_pred CCCccEEE----ecCCCC--HHHHHHHHHhccCeeeehh
Q psy5880 257 KGKLPIIG----VGGVFS--GKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 257 ~~~ipvia----~GGI~s--~~da~~~l~~GAd~V~vg~ 289 (328)
. +|||+ ++|.+. +.-+..++.+|||++++=.
T Consensus 262 ~--lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~ 298 (335)
T PRK08673 262 H--LPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEV 298 (335)
T ss_pred C--CCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEe
Confidence 6 99977 344322 3556788889999666543
No 262
>PRK08999 hypothetical protein; Provisional
Probab=97.17 E-value=0.00093 Score=62.56 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 243 NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 243 ~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
+.+++.++.+++..+ +||++-||| +.+++.+++++||+.|.+.+++
T Consensus 266 ~~g~~~~~~~~~~~~--~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 266 PLGWEGFAALIAGVP--LPVYALGGL-GPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred CCCHHHHHHHHHhCC--CCEEEECCC-CHHHHHHHHHhCCCEEEEEEEe
Confidence 345677788887776 999999999 9999999999999999988775
No 263
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.16 E-value=0.0026 Score=56.40 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=71.2
Q ss_pred CCCEEEEeC---CC----CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHH
Q psy5880 179 LPPILVKIA---PD----LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISE 251 (328)
Q Consensus 179 ~~Pv~vKl~---~~----~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~ 251 (328)
++||++=+- |. .+..++.++|+.. .++|+++|++..-... +.| ..+.++.
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~--~~~GA~~l~v~~~~~~---------------~~g------~~~~~~~ 66 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAY--EKAGAAAISVLTEPKY---------------FQG------SLEDLRA 66 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHH--HHcCCCEEEEEeCccc---------------cCC------CHHHHHH
Confidence 468877442 32 1334688999999 9999999987642111 112 1367777
Q ss_pred HHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHH
Q psy5880 252 MYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 252 i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~ 304 (328)
+++.++ +||+.-|+|.+.+++.+++++|||.|.++...+ . +..++++.+
T Consensus 67 i~~~v~--iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~-~-~~~~~~~~~ 115 (217)
T cd00331 67 VREAVS--LPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL-D-DEQLKELYE 115 (217)
T ss_pred HHHhcC--CCEEECCeecCHHHHHHHHHcCCCEEEEeeccC-C-HHHHHHHHH
Confidence 888776 999999999999999999999999999988764 2 344444433
No 264
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.16 E-value=0.0051 Score=56.50 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=30.7
Q ss_pred CccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 259 KLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 259 ~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
++.+.++||| |++.+.++.++|+|.|.+|+...
T Consensus 229 ~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 229 HVLLEASGNI-TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred CeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 5779999999 99999999999999999999874
No 265
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=97.14 E-value=0.012 Score=55.27 Aligned_cols=142 Identities=11% Similarity=0.134 Sum_probs=85.0
Q ss_pred HHHHHHHhhcC-ccceEEeccCCCCC----cCc--cCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCccccccc
Q psy5880 44 FWLLGILKFGD-VAHYFVVNVSSPNT----ANL--RKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKK 116 (328)
Q Consensus 44 ~y~~~~~~l~~-~~~~v~~n~sspN~----~gl--~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~ 116 (328)
++.+.++.+.. -.|.|++|..||+. .|- .=+.+++.+.++++++++.-. ...|+.+|+..+.+
T Consensus 76 ~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~-----~~~pVsvKiR~g~~----- 145 (312)
T PRK10550 76 WLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVP-----AHLPVTVKVRLGWD----- 145 (312)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcC-----CCcceEEEEECCCC-----
Confidence 45555554432 36899999999962 221 223467778888888877631 13699999887642
Q ss_pred chhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHH
Q psy5880 117 DIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKK 196 (328)
Q Consensus 117 ~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~ 196 (328)
..+...++++.++.++ +|+|.+|--.... +. . .+..-.+.+..|++. .++||+. ..++. ...
T Consensus 146 -~~~~~~~~a~~l~~~G--vd~i~Vh~Rt~~~-~y-~--g~~~~~~~i~~ik~~-------~~iPVi~--nGdI~--t~~ 207 (312)
T PRK10550 146 -SGERKFEIADAVQQAG--ATELVVHGRTKED-GY-R--AEHINWQAIGEIRQR-------LTIPVIA--NGEIW--DWQ 207 (312)
T ss_pred -CchHHHHHHHHHHhcC--CCEEEECCCCCcc-CC-C--CCcccHHHHHHHHhh-------cCCcEEE--eCCcC--CHH
Confidence 1223567777777776 9999987432110 11 0 011112556666665 5789875 23332 234
Q ss_pred HHHHHhccccCCccEEEEe
Q psy5880 197 DIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~ 215 (328)
++.+.+ ...|+|+|.+.
T Consensus 208 da~~~l--~~~g~DgVmiG 224 (312)
T PRK10550 208 SAQQCM--AITGCDAVMIG 224 (312)
T ss_pred HHHHHH--hccCCCEEEEc
Confidence 555556 67899999654
No 266
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.10 E-value=0.0092 Score=56.16 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=83.2
Q ss_pred HHHHHHHhhcCc-cceEEeccCCCCC----cC-cc-CCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCccccccc
Q psy5880 44 FWLLGILKFGDV-AHYFVVNVSSPNT----AN-LR-KLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKK 116 (328)
Q Consensus 44 ~y~~~~~~l~~~-~~~v~~n~sspN~----~g-l~-~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~ 116 (328)
++...++.+... .|.|++|.+||.. .| -. -+.+++-+.++++++++.- ..|+.+|+..+..-
T Consensus 76 ~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-------~~pv~vKir~g~~~---- 144 (319)
T TIGR00737 76 TMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-------DIPVTVKIRIGWDD---- 144 (319)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-------CCCEEEEEEcccCC----
Confidence 455555544433 6899999999952 11 11 2346777888888887653 26888898654321
Q ss_pred chhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHH
Q psy5880 117 DIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKK 196 (328)
Q Consensus 117 ~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~ 196 (328)
......++++.++.++ +|+|.+|--.+. .+. .+....+.++.|++. .++||+. ..++.. ..
T Consensus 145 -~~~~~~~~a~~l~~~G--~d~i~vh~r~~~-~~~----~~~~~~~~i~~i~~~-------~~ipvi~--nGgI~~--~~ 205 (319)
T TIGR00737 145 -AHINAVEAARIAEDAG--AQAVTLHGRTRA-QGY----SGEANWDIIARVKQA-------VRIPVIG--NGDIFS--PE 205 (319)
T ss_pred -CcchHHHHHHHHHHhC--CCEEEEEccccc-ccC----CCchhHHHHHHHHHc-------CCCcEEE--eCCCCC--HH
Confidence 1223567777777766 899988632111 011 112234666666665 5789876 333332 34
Q ss_pred HHHHHhccccCCccEEEEe
Q psy5880 197 DIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~ 215 (328)
++.+.+ ...|+|++.+.
T Consensus 206 da~~~l--~~~gad~Vmig 222 (319)
T TIGR00737 206 DAKAML--ETTGCDGVMIG 222 (319)
T ss_pred HHHHHH--HhhCCCEEEEC
Confidence 555556 57899999664
No 267
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=97.09 E-value=0.03 Score=50.16 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=44.8
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHH----
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK---- 272 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~---- 272 (328)
.+++.+ .+.|+|+++++.+ .+..+|+..+. -.++.++||+ ++
T Consensus 139 ~~a~~a--~~~g~dgvv~~~~------------------------------~~~~ir~~~~~-~~~~v~pGI~-~~g~~~ 184 (230)
T PRK00230 139 RLAKLA--QEAGLDGVVCSAQ------------------------------EAAAIREATGP-DFLLVTPGIR-PAGSDA 184 (230)
T ss_pred HHHHHH--HHcCCeEEEeChH------------------------------HHHHHHhhcCC-ceEEEcCCcC-CCCCCc
Confidence 556666 7788888865521 13455555542 3457778997 33
Q ss_pred -------HHHHHHHhccCeeeehhHHhhcCch
Q psy5880 273 -------DAFEKIKAGASLVQIYTSFVYHGPP 297 (328)
Q Consensus 273 -------da~~~l~~GAd~V~vg~a~l~~gp~ 297 (328)
...++++.|||.|.+||++. +.++
T Consensus 185 ~dq~~~~~~~~ai~~Gad~iVvGR~I~-~a~d 215 (230)
T PRK00230 185 GDQKRVMTPAQAIAAGSDYIVVGRPIT-QAAD 215 (230)
T ss_pred chHHHHhCHHHHHHcCCCEEEECCccc-CCCC
Confidence 47778889999999999996 3344
No 268
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.07 E-value=0.018 Score=50.63 Aligned_cols=125 Identities=16% Similarity=0.254 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+...+.++++...+ ...+|+-+..|+. .+.++.+++.. .+ +.+=...-++.++
T Consensus 19 ~e~a~~~~~al~~~G--i~~iEit~~t~~a------------~~~i~~l~~~~------~~--~~vGAGTVl~~~~---- 72 (204)
T TIGR01182 19 VDDALPLAKALIEGG--LRVLEVTLRTPVA------------LDAIRLLRKEV------PD--ALIGAGTVLNPEQ---- 72 (204)
T ss_pred HHHHHHHHHHHHHcC--CCEEEEeCCCccH------------HHHHHHHHHHC------CC--CEEEEEeCCCHHH----
Confidence 345566666666665 9999998876552 34455555431 22 2222222244332
Q ss_pred HHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
++.+ .++|+++++ +..+ .-+.++..++ .+ +|++- |+.|+.++.+++
T Consensus 73 a~~a--~~aGA~Fiv-sP~~--------------------------~~~v~~~~~~-~~--i~~iP--G~~TptEi~~A~ 118 (204)
T TIGR01182 73 LRQA--VDAGAQFIV-SPGL--------------------------TPELAKHAQD-HG--IPIIP--GVATPSEIMLAL 118 (204)
T ss_pred HHHH--HHcCCCEEE-CCCC--------------------------CHHHHHHHHH-cC--CcEEC--CCCCHHHHHHHH
Confidence 5666 789999994 2211 0133344333 33 77777 999999999999
Q ss_pred HhccCeeeehhHHhhcCchHHHHHH
Q psy5880 279 KAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 279 ~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
++||+.|-+.=+-...||.+++.++
T Consensus 119 ~~Ga~~vKlFPA~~~GG~~yikal~ 143 (204)
T TIGR01182 119 ELGITALKLFPAEVSGGVKMLKALA 143 (204)
T ss_pred HCCCCEEEECCchhcCCHHHHHHHh
Confidence 9999999998765444699998887
No 269
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.00 E-value=0.0099 Score=54.44 Aligned_cols=89 Identities=20% Similarity=0.260 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCc
Q psy5880 163 LLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLR 242 (328)
Q Consensus 163 i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~ 242 (328)
+-.++.++++.++ .+.++.+=.. + +.++ ..+ .++|+|+|-+.+-.
T Consensus 164 ~~~av~~~r~~~~--~~~~Igvev~---t---~eea-~~A--~~~gaDyI~ld~~~------------------------ 208 (265)
T TIGR00078 164 IEKAVKRARAAAP--FALKIEVEVE---S---LEEA-EEA--AEAGADIIMLDNMK------------------------ 208 (265)
T ss_pred HHHHHHHHHHhCC--CCCeEEEEeC---C---HHHH-HHH--HHcCCCEEEECCCC------------------------
Confidence 4444444444332 2345554432 2 3443 444 58999999765521
Q ss_pred hHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhH
Q psy5880 243 NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 243 ~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a 290 (328)
.+.++++.+.++..+|+.++||| +.+.+.++.++|+|.+.+|..
T Consensus 209 ---~e~lk~~v~~~~~~ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgai 252 (265)
T TIGR00078 209 ---PEEIKEAVQLLKGRVLLEASGGI-TLDNLEEYAETGVDVISSGAL 252 (265)
T ss_pred ---HHHHHHHHHHhcCCCcEEEECCC-CHHHHHHHHHcCCCEEEeCHH
Confidence 13445555545445999999999 699999999999999999543
No 270
>PRK06801 hypothetical protein; Provisional
Probab=97.00 E-value=0.11 Score=48.04 Aligned_cols=77 Identities=25% Similarity=0.387 Sum_probs=55.7
Q ss_pred HHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecC--CCCHHH
Q psy5880 196 KDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGG--VFSGKD 273 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GG--I~s~~d 273 (328)
.+..+.. .+.|+|++-++-.+. .|-+.+.+ +..++.++++++.++ +|++.-|| |. .++
T Consensus 159 e~a~~f~--~~tgvD~LAvaiGt~-------------Hg~y~~~~--~l~~e~l~~i~~~~~--~PLVlHGGSgi~-~e~ 218 (286)
T PRK06801 159 QLARDFV--DRTGIDALAVAIGNA-------------HGKYKGEP--KLDFARLAAIHQQTG--LPLVLHGGSGIS-DAD 218 (286)
T ss_pred HHHHHHH--HHHCcCEEEeccCCC-------------CCCCCCCC--CCCHHHHHHHHHhcC--CCEEEECCCCCC-HHH
Confidence 3444444 578999997732211 13343322 245688899998887 99999999 76 578
Q ss_pred HHHHHHhccCeeeehhHHh
Q psy5880 274 AFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l 292 (328)
+.+++.+|++-|-++|.+.
T Consensus 219 ~~~~i~~Gi~KINv~T~~~ 237 (286)
T PRK06801 219 FRRAIELGIHKINFYTGMS 237 (286)
T ss_pred HHHHHHcCCcEEEehhHHH
Confidence 9999999999999999885
No 271
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.95 E-value=0.011 Score=54.01 Aligned_cols=83 Identities=18% Similarity=0.258 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcC
Q psy5880 162 HLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPL 241 (328)
Q Consensus 162 ~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~ 241 (328)
+.+++|++. +++||+-|+.-+. +.+ ++.| .++|+|.|+.+.+.
T Consensus 57 ~~I~~I~~~-------V~iPVig~~kigh----~~E-a~~L--~~~GvDiIDeTe~l----------------------- 99 (287)
T TIGR00343 57 KMIKEIMDA-------VSIPVMAKVRIGH----FVE-AQIL--EALGVDYIDESEVL----------------------- 99 (287)
T ss_pred HHHHHHHHh-------CCCCEEEEeeccH----HHH-HHHH--HHcCCCEEEccCCC-----------------------
Confidence 445556665 7899999887653 334 5778 89999999744321
Q ss_pred chHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeee
Q psy5880 242 RNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286 (328)
Q Consensus 242 ~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~ 286 (328)
+| .-+.+..+++.++ +|+++ |++|.+++..++..|||+|.
T Consensus 100 rP-ade~~~~~K~~f~--vpfma--d~~~l~EAlrai~~GadmI~ 139 (287)
T TIGR00343 100 TP-ADWTFHIDKKKFK--VPFVC--GARDLGEALRRINEGAAMIR 139 (287)
T ss_pred Cc-HHHHHHHHHHHcC--CCEEc--cCCCHHHHHHHHHCCCCEEe
Confidence 11 2356777777764 77665 99999999999999999884
No 272
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=96.95 E-value=0.0042 Score=54.53 Aligned_cols=127 Identities=19% Similarity=0.270 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
..|++....++ +|.+.+|.-+. ..+.++++.+|+. ++-..+=+.|..+.+.+. ..+
T Consensus 70 ~~~i~~~~~~g--~~~i~~H~E~~-----------~~~~~~i~~ik~~--------g~k~GialnP~T~~~~~~---~~l 125 (201)
T PF00834_consen 70 ERYIEEFAEAG--ADYITFHAEAT-----------EDPKETIKYIKEA--------GIKAGIALNPETPVEELE---PYL 125 (201)
T ss_dssp GGHHHHHHHHT---SEEEEEGGGT-----------TTHHHHHHHHHHT--------TSEEEEEE-TTS-GGGGT---TTG
T ss_pred HHHHHHHHhcC--CCEEEEcccch-----------hCHHHHHHHHHHh--------CCCEEEEEECCCCchHHH---HHh
Confidence 44555666666 89998776521 1245667777763 556677777876543332 222
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC---CCccEEEecCCCCHHHHHHHHH
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK---GKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~---~~ipvia~GGI~s~~da~~~l~ 279 (328)
+ -+|.|.+-...+ |++|-...+..++.++++++... .++.|..-|||+. +.+.++.+
T Consensus 126 ---~-~vD~VlvMsV~P---------------G~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~ 185 (201)
T PF00834_consen 126 ---D-QVDMVLVMSVEP---------------GFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVE 185 (201)
T ss_dssp ---C-CSSEEEEESS-T---------------TTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHH
T ss_pred ---h-hcCEEEEEEecC---------------CCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHH
Confidence 2 378887654322 35566666777888887777643 3589999999954 58888999
Q ss_pred hccCeeeehhHHhh
Q psy5880 280 AGASLVQIYTSFVY 293 (328)
Q Consensus 280 ~GAd~V~vg~a~l~ 293 (328)
+|||.+.+||+++.
T Consensus 186 aGad~~V~Gs~iF~ 199 (201)
T PF00834_consen 186 AGADIFVAGSAIFK 199 (201)
T ss_dssp HT--EEEESHHHHT
T ss_pred cCCCEEEECHHHhC
Confidence 99999999999864
No 273
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=96.94 E-value=0.05 Score=50.31 Aligned_cols=77 Identities=26% Similarity=0.363 Sum_probs=56.0
Q ss_pred HHHHHHHhccccCCccEEEEe-cCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEec--CCCCH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVS-NTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVG--GVFSG 271 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~-n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~G--GI~s~ 271 (328)
+.+..+.. .+.|+|++.++ ++..+ -+.+.+ ...++.++++++.++ +|+++-| ||. .
T Consensus 155 ~eea~~f~--~~tgvD~Lavs~Gt~hg--------------~~~~~~--~l~~e~L~~i~~~~~--iPlv~hGgSGi~-~ 213 (282)
T TIGR01859 155 PDEAEQFV--KETGVDYLAAAIGTSHG--------------KYKGEP--GLDFERLKEIKELTN--IPLVLHGASGIP-E 213 (282)
T ss_pred HHHHHHHH--HHHCcCEEeeccCcccc--------------ccCCCC--ccCHHHHHHHHHHhC--CCEEEECCCCCC-H
Confidence 44544444 45899999874 44322 122221 234788899999987 9999999 874 6
Q ss_pred HHHHHHHHhccCeeeehhHHh
Q psy5880 272 KDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 272 ~da~~~l~~GAd~V~vg~a~l 292 (328)
+++.+++.+|++.|-++|.+.
T Consensus 214 e~i~~~i~~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 214 EQIKKAIKLGIAKINIDTDCR 234 (282)
T ss_pred HHHHHHHHcCCCEEEECcHHH
Confidence 779999999999999999885
No 274
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.90 E-value=0.012 Score=54.02 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=46.5
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCe
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASL 284 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~ 284 (328)
.++|+|+|-+.+-. .+.++++.+..+.++|+.++||| +.+.+.++.++|+|.
T Consensus 199 ~~~gaDyI~ld~~~---------------------------~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~~Gvd~ 250 (268)
T cd01572 199 LEAGADIIMLDNMS---------------------------PEELREAVALLKGRVLLEASGGI-TLENIRAYAETGVDY 250 (268)
T ss_pred HHcCCCEEEECCcC---------------------------HHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHHcCCCE
Confidence 58999999765421 24455555555335999999999 699999999999999
Q ss_pred eeehhHHh
Q psy5880 285 VQIYTSFV 292 (328)
Q Consensus 285 V~vg~a~l 292 (328)
+.+++...
T Consensus 251 Iav~sl~~ 258 (268)
T cd01572 251 ISVGALTH 258 (268)
T ss_pred EEEEeeec
Confidence 99998653
No 275
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=96.89 E-value=0.0064 Score=54.15 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=70.2
Q ss_pred cCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcc---cCCcccccccchhHHHHHHHHHH
Q psy5880 53 GDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKI---APDLSLDEKKDIADVVLDSVKGI 129 (328)
Q Consensus 53 ~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki---~~~l~~~~n~~~~~~i~~~~~~a 129 (328)
..+.|+ ++|++++|+.. ++.+.+.+.+..... .|..+|+ .+.| +++.+.+..+.+
T Consensus 88 A~EiD~-Vin~~~~~~g~---------~~~v~~ei~~v~~~~-----~~~~lKvIlEt~~L-------~~e~i~~a~~~~ 145 (221)
T PRK00507 88 ADEIDM-VINIGALKSGD---------WDAVEADIRAVVEAA-----GGAVLKVIIETCLL-------TDEEKVKACEIA 145 (221)
T ss_pred CceEee-eccHHHhcCCC---------HHHHHHHHHHHHHhc-----CCceEEEEeecCcC-------CHHHHHHHHHHH
Confidence 345564 79999999865 333334444333211 3566777 5555 356678888888
Q ss_pred HHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCc
Q psy5880 130 LKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKV 209 (328)
Q Consensus 130 ~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~ 209 (328)
.+++ +|+|-.|.+-. ++.. ..+.++.+++. ..-.+.+|-+.+... ..+..+ + .++|+
T Consensus 146 ~~ag--adfIKTsTG~~--~~ga-------t~~~v~~m~~~-------~~~~~~IKasGGIrt--~~~a~~-~--i~aGA 202 (221)
T PRK00507 146 KEAG--ADFVKTSTGFS--TGGA-------TVEDVKLMRET-------VGPRVGVKASGGIRT--LEDALA-M--IEAGA 202 (221)
T ss_pred HHhC--CCEEEcCCCCC--CCCC-------CHHHHHHHHHH-------hCCCceEEeeCCcCC--HHHHHH-H--HHcCc
Confidence 8887 99998765531 1111 22333444444 334688899988653 444444 4 58999
Q ss_pred cEEEEe
Q psy5880 210 DGLIVS 215 (328)
Q Consensus 210 d~i~~~ 215 (328)
+-|-.+
T Consensus 203 ~riGtS 208 (221)
T PRK00507 203 TRLGTS 208 (221)
T ss_pred ceEccC
Confidence 988443
No 276
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.87 E-value=0.047 Score=49.87 Aligned_cols=171 Identities=12% Similarity=0.161 Sum_probs=89.1
Q ss_pred CcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCC
Q psy5880 100 PPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPL 179 (328)
Q Consensus 100 ~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~ 179 (328)
.|+++++.-.-++.........+.+ ++.|.+++ +|++-+++.- |. .. ..+.+.++ ..|.+.+++ +.
T Consensus 75 ~~lil~ls~~t~~~~~~~~~~l~~s-VeeAvrlG--AdAV~~~v~~----Gs-~~-E~~~l~~l-~~v~~ea~~----~G 140 (264)
T PRK08227 75 KPVVLRASGGNSILKELSNEAVAVD-MEDAVRLN--ACAVAAQVFI----GS-EY-EHQSIKNI-IQLVDAGLR----YG 140 (264)
T ss_pred CcEEEEEcCCCCCCCCCCcccceec-HHHHHHCC--CCEEEEEEec----CC-HH-HHHHHHHH-HHHHHHHHH----hC
Confidence 5677776543333221111122222 33355666 8887655431 10 00 11223333 233333333 68
Q ss_pred CCEEEEeCCC---C-Ch-hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHH
Q psy5880 180 PPILVKIAPD---L-SL-DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYK 254 (328)
Q Consensus 180 ~Pv~vKl~~~---~-~~-~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~ 254 (328)
+|+++ +.|- . +. +-+...++.. .+.|+|.|-+- |++ +..+++.+
T Consensus 141 ~Plla-~~prG~~~~~~~~~ia~aaRia--aELGADiVK~~--------------------y~~--------~~f~~vv~ 189 (264)
T PRK08227 141 MPVMA-VTAVGKDMVRDARYFSLATRIA--AEMGAQIIKTY--------------------YVE--------EGFERITA 189 (264)
T ss_pred CcEEE-EecCCCCcCchHHHHHHHHHHH--HHHcCCEEecC--------------------CCH--------HHHHHHHH
Confidence 99998 4432 1 11 2244556666 89999988321 111 23455555
Q ss_pred HcCCCccEEEecCCCC-HHH----HHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHH
Q psy5880 255 LTKGKLPIIGVGGVFS-GKD----AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQA 321 (328)
Q Consensus 255 ~~~~~ipvia~GGI~s-~~d----a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~ 321 (328)
..+ +||+..||=++ .++ +.+++.+||..|.+||-++.. ++ +..+.+.+.... |+-.|++|.
T Consensus 190 a~~--vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~-~~-p~~~~~al~~IV--h~~~s~~eA 255 (264)
T PRK08227 190 GCP--VPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQS-EH-PVAMIKAVHAVV--HENETAKEA 255 (264)
T ss_pred cCC--CcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhcc-CC-HHHHHHHHHHHH--hCCCCHHHH
Confidence 666 99999999874 333 445667999999999988643 43 233333344332 222355543
No 277
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.87 E-value=0.11 Score=46.10 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=68.6
Q ss_pred HHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccc
Q psy5880 126 VKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDS 205 (328)
Q Consensus 126 ~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~ 205 (328)
++.+..++ ++++. +|+.. + ++++..++ .++|++ +..+|. .++ ..+ .
T Consensus 80 a~~a~~aG--A~Fiv----sP~~~-------~----~vi~~a~~--------~~i~~i---PG~~Tp---tEi-~~a--~ 125 (212)
T PRK05718 80 LAQAIEAG--AQFIV----SPGLT-------P----PLLKAAQE--------GPIPLI---PGVSTP---SEL-MLG--M 125 (212)
T ss_pred HHHHHHcC--CCEEE----CCCCC-------H----HHHHHHHH--------cCCCEe---CCCCCH---HHH-HHH--H
Confidence 45555555 89987 77752 1 33333332 356765 233453 343 445 6
Q ss_pred cCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCee
Q psy5880 206 KCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLV 285 (328)
Q Consensus 206 ~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V 285 (328)
++|++.+-++-. +..| +..+++.++.-++ +++++.+|||+. +.+.+++.+|+..+
T Consensus 126 ~~Ga~~vKlFPa-----------------~~~g------g~~~lk~l~~p~p-~~~~~ptGGV~~-~ni~~~l~ag~v~~ 180 (212)
T PRK05718 126 ELGLRTFKFFPA-----------------EASG------GVKMLKALAGPFP-DVRFCPTGGISP-ANYRDYLALPNVLC 180 (212)
T ss_pred HCCCCEEEEccc-----------------hhcc------CHHHHHHHhccCC-CCeEEEeCCCCH-HHHHHHHhCCCEEE
Confidence 999999977421 1111 1367888888776 599999999955 99999999996555
Q ss_pred eehhHHh
Q psy5880 286 QIYTSFV 292 (328)
Q Consensus 286 ~vg~a~l 292 (328)
..|+.+.
T Consensus 181 vggs~L~ 187 (212)
T PRK05718 181 IGGSWMV 187 (212)
T ss_pred EEChHhC
Confidence 5555553
No 278
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.85 E-value=0.013 Score=54.11 Aligned_cols=69 Identities=10% Similarity=0.185 Sum_probs=49.0
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHH-HHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKST-ELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l-~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+.++.++ .++|+|+|-+.|-... .+ +.+..+++. ..++|+.++||| |.+.
T Consensus 206 leea~eA---~~~GaD~I~LDn~~~e------------------------~l~~av~~~~~~-~~~i~leAsGGI-t~~n 256 (288)
T PRK07428 206 LEQVQEA---LEYGADIIMLDNMPVD------------------------LMQQAVQLIRQQ-NPRVKIEASGNI-TLET 256 (288)
T ss_pred HHHHHHH---HHcCCCEEEECCCCHH------------------------HHHHHHHHHHhc-CCCeEEEEECCC-CHHH
Confidence 4455444 4899999977763221 11 223333332 246999999999 6999
Q ss_pred HHHHHHhccCeeeehhHHh
Q psy5880 274 AFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l 292 (328)
+.++.++|+|.+.+|+.+.
T Consensus 257 i~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 257 IRAVAETGVDYISSSAPIT 275 (288)
T ss_pred HHHHHHcCCCEEEEchhhh
Confidence 9999999999999999875
No 279
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.85 E-value=0.0044 Score=58.75 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=56.7
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG 258 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~ 258 (328)
...+.+=+++..+ -.+.++.| .++|+|.|++-.... + ....++.++.+++.++
T Consensus 96 ~l~V~aavg~~~~---~~er~~~L--~~agvD~ivID~a~g----------------~-----s~~~~~~ik~ik~~~~- 148 (352)
T PF00478_consen 96 RLLVAAAVGTRDD---DFERAEAL--VEAGVDVIVIDSAHG----------------H-----SEHVIDMIKKIKKKFP- 148 (352)
T ss_dssp CBCEEEEEESSTC---HHHHHHHH--HHTT-SEEEEE-SST----------------T-----SHHHHHHHHHHHHHST-
T ss_pred cceEEEEecCCHH---HHHHHHHH--HHcCCCEEEccccCc----------------c-----HHHHHHHHHHHHHhCC-
Confidence 3455555555432 35566778 889999998753221 1 1234678999999986
Q ss_pred CccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 259 KLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 259 ~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
++||| .|.|-|++-+..++++|||+|-||
T Consensus 149 ~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 149 DVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp TSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred CceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 68888 577999999999999999999887
No 280
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.84 E-value=0.063 Score=47.06 Aligned_cols=123 Identities=11% Similarity=0.218 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC--CChhhHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD--LSLDEKK 196 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~--~~~~~~~ 196 (328)
.+...+.++++.+.+ ...+|+.++.|+. .+.++.+++. .| -+.+..+ ++.+
T Consensus 15 ~~~a~~ia~al~~gG--i~~iEit~~tp~a------------~~~I~~l~~~---------~~-~~~vGAGTVl~~e--- 67 (201)
T PRK06015 15 VEHAVPLARALAAGG--LPAIEITLRTPAA------------LDAIRAVAAE---------VE-EAIVGAGTILNAK--- 67 (201)
T ss_pred HHHHHHHHHHHHHCC--CCEEEEeCCCccH------------HHHHHHHHHH---------CC-CCEEeeEeCcCHH---
Confidence 345566666666665 9999998886653 2444555443 13 1333333 4432
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHH
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFE 276 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~ 276 (328)
-++.+ .++|+++++--+.. -+.++..++ .+ +|++- |+.|+.++.+
T Consensus 68 -~a~~a--i~aGA~FivSP~~~---------------------------~~vi~~a~~-~~--i~~iP--G~~TptEi~~ 112 (201)
T PRK06015 68 -QFEDA--AKAGSRFIVSPGTT---------------------------QELLAAAND-SD--VPLLP--GAATPSEVMA 112 (201)
T ss_pred -HHHHH--HHcCCCEEECCCCC---------------------------HHHHHHHHH-cC--CCEeC--CCCCHHHHHH
Confidence 34666 79999998522210 133444333 23 55554 9999999999
Q ss_pred HHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 277 KIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 277 ~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
++++||+.|-+.=+-...||.+++.++
T Consensus 113 A~~~Ga~~vK~FPa~~~GG~~yikal~ 139 (201)
T PRK06015 113 LREEGYTVLKFFPAEQAGGAAFLKALS 139 (201)
T ss_pred HHHCCCCEEEECCchhhCCHHHHHHHH
Confidence 999999999999764334699998887
No 281
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.80 E-value=0.027 Score=48.84 Aligned_cols=125 Identities=14% Similarity=0.301 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+...++++.+...+ ++.+|+.+..|+ ..+.++.+++.. .+.++.. ..-.+.++ +
T Consensus 16 ~~~~~~~~~l~~~G--~~~vev~~~~~~------------~~~~i~~l~~~~------~~~~iGa--g~v~~~~~----~ 69 (190)
T cd00452 16 EDALALAEALIEGG--IRAIEITLRTPG------------ALEAIRALRKEF------PEALIGA--GTVLTPEQ----A 69 (190)
T ss_pred HHHHHHHHHHHHCC--CCEEEEeCCChh------------HHHHHHHHHHHC------CCCEEEE--EeCCCHHH----H
Confidence 44556666666555 999998776433 122445554431 1222222 12233322 3
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .++|+++++..++. .+.+. .++..+ ++++. |+.|.+++.++++
T Consensus 70 ~~a--~~~Ga~~i~~p~~~---------------------------~~~~~-~~~~~~--~~~i~--gv~t~~e~~~A~~ 115 (190)
T cd00452 70 DAA--IAAGAQFIVSPGLD---------------------------PEVVK-AANRAG--IPLLP--GVATPTEIMQALE 115 (190)
T ss_pred HHH--HHcCCCEEEcCCCC---------------------------HHHHH-HHHHcC--CcEEC--CcCCHHHHHHHHH
Confidence 556 78999999643211 12223 333444 77765 8889999999999
Q ss_pred hccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 280 AGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 280 ~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
.|||.|++..+-. .++++++.++..
T Consensus 116 ~Gad~i~~~p~~~-~g~~~~~~l~~~ 140 (190)
T cd00452 116 LGADIVKLFPAEA-VGPAYIKALKGP 140 (190)
T ss_pred CCCCEEEEcCCcc-cCHHHHHHHHhh
Confidence 9999999863322 267777777543
No 282
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.79 E-value=0.21 Score=45.57 Aligned_cols=93 Identities=17% Similarity=0.120 Sum_probs=64.0
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.+.||.+|=...++.+++...++.+ ...|-.-|.+.-|... -||.- ....+..+..+++...
T Consensus 129 t~kpV~lKrGqf~s~~e~~~aae~i--~~~Gn~~vilcERG~~-------------fgy~~---~~~D~~~ip~mk~~~t 190 (281)
T PRK12457 129 TGKPVNIKKPQFMSPTQMKHVVSKC--REAGNDRVILCERGSS-------------FGYDN---LVVDMLGFRQMKRTTG 190 (281)
T ss_pred cCCeEEecCCCcCCHHHHHHHHHHH--HHcCCCeEEEEeCCCC-------------CCCCC---cccchHHHHHHHhhCC
Confidence 5789999998888888899999999 8999998988765432 01221 2233455666777532
Q ss_pred CCccEEEe---------------cCCCCH--HHHHHHHHhccCeeeehh
Q psy5880 258 GKLPIIGV---------------GGVFSG--KDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 258 ~~ipvia~---------------GGI~s~--~da~~~l~~GAd~V~vg~ 289 (328)
.+|||.- ||-+.. .-+..++.+|||++++=+
T Consensus 191 -~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEv 238 (281)
T PRK12457 191 -DLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEA 238 (281)
T ss_pred -CCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 2888852 444332 335667789999999865
No 283
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.78 E-value=0.017 Score=53.17 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 247 ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 247 ~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
+.++++.+..+..+|+.++||| +.+.+.++.++|+|.|.+|+...
T Consensus 220 e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 220 DEIREFVKLVPSAIVTEASGGI-TLENLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence 5566666665445888899999 99999999999999999998653
No 284
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.75 E-value=0.044 Score=52.60 Aligned_cols=125 Identities=12% Similarity=0.017 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.. |++.+-+...-+. ..+...+.+++||+. ++ .+++|.+.....++.++..++++
T Consensus 144 ~~~~~~~a~~~~~~Gf~~~Kik~~~~~--------~~~~di~~i~~vR~~---~G--~~~~l~vDan~~~~~~~A~~~~~ 210 (368)
T cd03329 144 PEAYADFAEECKALGYRAIKLHPWGPG--------VVRRDLKACLAVREA---VG--PDMRLMHDGAHWYSRADALRLGR 210 (368)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCch--------hHHHHHHHHHHHHHH---hC--CCCeEEEECCCCcCHHHHHHHHH
Confidence 4556666665544 6999987432110 123456777777776 34 57899999988899888889999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCC-HHHHHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFS-GKDAFEKIK 279 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s-~~da~~~l~ 279 (328)
.+ .+.++.++- .|+.+..++..+++++.++ +||.+.-.+.+ ++++.++++
T Consensus 211 ~l--~~~~l~~iE-------------------------eP~~~~d~~~~~~l~~~~~--ipIa~~E~~~~~~~~~~~~i~ 261 (368)
T cd03329 211 AL--EELGFFWYE-------------------------DPLREASISSYRWLAEKLD--IPILGTEHSRGALESRADWVL 261 (368)
T ss_pred Hh--hhcCCCeEe-------------------------CCCCchhHHHHHHHHhcCC--CCEEccCcccCcHHHHHHHHH
Confidence 99 777766551 0122223455667788776 89888777888 999999998
Q ss_pred hc-cCeeeeh
Q psy5880 280 AG-ASLVQIY 288 (328)
Q Consensus 280 ~G-Ad~V~vg 288 (328)
.| +|.|++-
T Consensus 262 ~~a~d~v~~d 271 (368)
T cd03329 262 AGATDFLRAD 271 (368)
T ss_pred hCCCCEEecC
Confidence 77 7787764
No 285
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.75 E-value=0.024 Score=49.51 Aligned_cols=90 Identities=20% Similarity=0.306 Sum_probs=61.4
Q ss_pred CEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCc
Q psy5880 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKL 260 (328)
Q Consensus 181 Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~i 260 (328)
+++.=++.. +.++...+++.+ .+.|+..+-++-++. .+++.++++++..+ +
T Consensus 9 ~iiaVir~~-~~~~a~~~~~al--~~gGi~~iEiT~~t~------------------------~a~~~I~~l~~~~p-~- 59 (196)
T PF01081_consen 9 KIIAVIRGD-DPEDAVPIAEAL--IEGGIRAIEITLRTP------------------------NALEAIEALRKEFP-D- 59 (196)
T ss_dssp SEEEEETTS-SGGGHHHHHHHH--HHTT--EEEEETTST------------------------THHHHHHHHHHHHT-T-
T ss_pred CEEEEEEcC-CHHHHHHHHHHH--HHCCCCEEEEecCCc------------------------cHHHHHHHHHHHCC-C-
Confidence 454444443 456789999999 999999998776542 24688888888886 3
Q ss_pred cEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 261 PIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 261 pvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
-++|.|.|.|.+++.+++++||+++. |..+ +|++++..+
T Consensus 60 ~~vGAGTV~~~e~a~~a~~aGA~Fiv--SP~~--~~~v~~~~~ 98 (196)
T PF01081_consen 60 LLVGAGTVLTAEQAEAAIAAGAQFIV--SPGF--DPEVIEYAR 98 (196)
T ss_dssp SEEEEES--SHHHHHHHHHHT-SEEE--ESS----HHHHHHHH
T ss_pred CeeEEEeccCHHHHHHHHHcCCCEEE--CCCC--CHHHHHHHH
Confidence 57999999999999999999999885 2222 255555443
No 286
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.74 E-value=0.019 Score=52.86 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 247 ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 247 ~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
+.++++.+..++++|+.++||| +.+.+.++.++|+|.+.+|+...
T Consensus 221 e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 221 DDMREAVRLTAGRAKLEASGGI-NESTLRVIAETGVDYISIGAMTK 265 (277)
T ss_pred HHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence 4455555555346999999999 69999999999999999998653
No 287
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.74 E-value=0.053 Score=49.10 Aligned_cols=150 Identities=19% Similarity=0.276 Sum_probs=85.0
Q ss_pred CCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccE--EEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhc
Q psy5880 98 PLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHY--FVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA 175 (328)
Q Consensus 98 ~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~--ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~ 175 (328)
..+|+++|+...=++.... -+......++-+.+++ +|+ +.+|+++.+. .+.+.++.+.+....+
T Consensus 76 ~dvplivkl~~~t~l~~~~-~~~~~~~~ve~ai~lg--adAV~~~Vy~Gse~e--------~~~i~~~~~v~~~a~~--- 141 (265)
T COG1830 76 HDVPLIVKLNGSTSLSPDP-NDQVLVATVEDAIRLG--ADAVGATVYVGSETE--------REMIENISQVVEDAHE--- 141 (265)
T ss_pred CCcCEEEEeccccccCCCc-ccceeeeeHHHHHhCC--CcEEEEEEecCCcch--------HHHHHHHHHHHHHHHH---
Confidence 4678888875432222221 1222333334444555 665 5667775332 2334444444443322
Q ss_pred CCCCCCEEEEeCC---C------CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHH
Q psy5880 176 VKPLPPILVKIAP---D------LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKST 246 (328)
Q Consensus 176 ~~~~~Pv~vKl~~---~------~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l 246 (328)
..+|+++=+-| . .+.+.+...++.. .+.|+|.|-.- |.|.+
T Consensus 142 --~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRla--aelGADIiK~~--------------------ytg~~------ 191 (265)
T COG1830 142 --LGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLA--AELGADIIKTK--------------------YTGDP------ 191 (265)
T ss_pred --cCCceEEEEeccCCcccccccccHHHHHHHHHHH--HHhcCCeEeec--------------------CCCCh------
Confidence 67998873322 1 2223344555666 89999988322 22221
Q ss_pred HHHHHHHHHcCCCccEEEecCCCC--HHH----HHHHHHhccCeeeehhHHhh
Q psy5880 247 ELISEMYKLTKGKLPIIGVGGVFS--GKD----AFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 247 ~~v~~i~~~~~~~ipvia~GGI~s--~~d----a~~~l~~GAd~V~vg~a~l~ 293 (328)
+.-+++-+..+ +||+..||=++ .++ ..+++.+||..+.+||=++.
T Consensus 192 e~F~~vv~~~~--vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ 242 (265)
T COG1830 192 ESFRRVVAACG--VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQ 242 (265)
T ss_pred HHHHHHHHhCC--CCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhc
Confidence 23355555666 99999999887 333 44566799999999998864
No 288
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.72 E-value=0.021 Score=52.15 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCc
Q psy5880 161 KHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEP 240 (328)
Q Consensus 161 ~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~ 240 (328)
.+-+++|++. +++||+-++.-+. +.+ ++.| .++|+|.|..+.+.
T Consensus 54 ~~~I~~Ik~~-------V~iPVIGi~K~~~----~~E-a~~L--~eaGvDiIDaT~r~---------------------- 97 (283)
T cd04727 54 PKMIKEIMDA-------VSIPVMAKVRIGH----FVE-AQIL--EALGVDMIDESEVL---------------------- 97 (283)
T ss_pred HHHHHHHHHh-------CCCCeEEeeehhH----HHH-HHHH--HHcCCCEEeccCCC----------------------
Confidence 4455666666 7899998876543 333 5778 89999999643321
Q ss_pred CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeee
Q psy5880 241 LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286 (328)
Q Consensus 241 ~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~ 286 (328)
+| .-+++..+|+.++ .|+++ +++|.+++..+.+.|||+|.
T Consensus 98 -rP-~~~~~~~iK~~~~--~l~MA--D~stleEal~a~~~Gad~I~ 137 (283)
T cd04727 98 -TP-ADEEHHIDKHKFK--VPFVC--GARNLGEALRRISEGAAMIR 137 (283)
T ss_pred -Cc-HHHHHHHHHHHcC--CcEEc--cCCCHHHHHHHHHCCCCEEE
Confidence 11 2356778887764 77766 99999999999999999884
No 289
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=96.70 E-value=0.0088 Score=59.88 Aligned_cols=47 Identities=21% Similarity=0.430 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccC---eeeehhHHhh
Q psy5880 244 KSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGAS---LVQIYTSFVY 293 (328)
Q Consensus 244 ~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd---~V~vg~a~l~ 293 (328)
.+++.++.+.+... +||++.|||+ ++.+.+++.+||+ .|.++++++.
T Consensus 431 ~g~~~~~~~~~~~~--~Pv~aiGGI~-~~~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 431 IGLDGLREVCEASK--LPVVAIGGIS-ASNAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred CCHHHHHHHHHcCC--CCEEEECCCC-HHHHHHHHHcCCCcCceEEEEeHHhc
Confidence 44677777777665 9999999995 9999999999999 9999999973
No 290
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.66 E-value=0.025 Score=53.40 Aligned_cols=70 Identities=24% Similarity=0.307 Sum_probs=53.5
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..+.++.+ .++|++.|++..+.. .+ +...++++++++..+ ++||++ |.+.|.++
T Consensus 94 ~~~~~~~~l--~eagv~~I~vd~~~G----------------~~-----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~ 148 (325)
T cd00381 94 DDKERAEAL--VEAGVDVIVIDSAHG----------------HS-----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEA 148 (325)
T ss_pred hHHHHHHHH--HhcCCCEEEEECCCC----------------Cc-----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHH
Confidence 345677788 789999987754211 11 234678889988875 588887 99999999
Q ss_pred HHHHHHhccCeeeeh
Q psy5880 274 AFEKIKAGASLVQIY 288 (328)
Q Consensus 274 a~~~l~~GAd~V~vg 288 (328)
+.+++++|||+|.++
T Consensus 149 A~~l~~aGaD~I~vg 163 (325)
T cd00381 149 ARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHhcCCCEEEEC
Confidence 999999999999873
No 291
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.65 E-value=0.14 Score=48.67 Aligned_cols=115 Identities=20% Similarity=0.161 Sum_probs=73.2
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCc-cchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTV-DRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT 256 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~-~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~ 256 (328)
.++||++|-....+.+++...++.+ .+.|-.-|.+..+.. .+ .|+.+.....+..+..+++..
T Consensus 207 t~kPVllk~G~~~t~ee~~~A~e~i--~~~Gn~~viL~erG~rtf--------------~s~y~~~~~dl~ai~~lk~~~ 270 (352)
T PRK13396 207 QDKPVLLKRGMAATIDEWLMAAEYI--LAAGNPNVILCERGIRTF--------------DRQYTRNTLDLSVIPVLRSLT 270 (352)
T ss_pred cCCeEEEeCCCCCCHHHHHHHHHHH--HHcCCCeEEEEecCCccC--------------cCCCCCCCcCHHHHHHHHHhh
Confidence 5789999999888889999999999 888987676654421 10 112122334578888888877
Q ss_pred CCCccEEEec----CCC--CHHHHHHHHHhccCeeeehhHH-----hhc-----CchHHHHHHHHHHHHH
Q psy5880 257 KGKLPIIGVG----GVF--SGKDAFEKIKAGASLVQIYTSF-----VYH-----GPPLVTRIKSELEELL 310 (328)
Q Consensus 257 ~~~ipvia~G----GI~--s~~da~~~l~~GAd~V~vg~a~-----l~~-----gp~~~~~i~~~l~~~m 310 (328)
. +|||..- |-+ .+.-+..++.+|||++++=.-+ +.+ .|+-++++.+.++..-
T Consensus 271 ~--lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~ 338 (352)
T PRK13396 271 H--LPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIG 338 (352)
T ss_pred C--CCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHH
Confidence 5 9997542 322 3355667778999955553311 111 2455666666655443
No 292
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=96.64 E-value=0.07 Score=47.20 Aligned_cols=177 Identities=16% Similarity=0.127 Sum_probs=95.7
Q ss_pred HHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHH
Q psy5880 44 FWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVL 123 (328)
Q Consensus 44 ~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~ 123 (328)
+-...++++..+.+++.++..--.+.|. ++++.+++.+ .+++. |+-+.. ......
T Consensus 12 ~a~~~~~~~~~~v~~iKig~~l~~~~G~----------~~v~~l~~~~--------~~v~l----D~K~~D---ig~t~~ 66 (213)
T TIGR01740 12 EALDLADSLGPEIEVIKVGIDLLLDGGD----------KIIDELAKLN--------KLIFL----DLKFAD---IPNTVK 66 (213)
T ss_pred HHHHHHHhcCCcCcEEEECHHHHHhcCH----------HHHHHHHHcC--------CCEEE----EEeecc---hHHHHH
Confidence 4455566777777887777422222232 3445555432 23322 221111 123455
Q ss_pred HHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCC-------hhhHH
Q psy5880 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLS-------LDEKK 196 (328)
Q Consensus 124 ~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~-------~~~~~ 196 (328)
.+++.+..++ +|++.+|..... +.+...++..++. + ..+=+.+.++.... .+.+.
T Consensus 67 ~~~~~~~~~g--ad~vTvh~~~g~----------~~l~~~~~~~~~~----~--~~v~~v~~lss~~~~~~~~~~~~~v~ 128 (213)
T TIGR01740 67 LQYESKIKQG--ADMVNVHGVAGS----------ESVEAAKEAASEG----G--RGLLAVTELTSMGSLDYGEDTMEKVL 128 (213)
T ss_pred HHHHHHHhcC--CCEEEEcCCCCH----------HHHHHHHHHhhcC----C--CeEEEEEcCCCCChhhhCcCHHHHHH
Confidence 6666665555 999998865211 2233444433321 1 12234556664211 13455
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH-HHH-
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG-KDA- 274 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~-~da- 274 (328)
++++.. .+.|+++++.+. +.+..+|+..+ + .++.++||+-. .+.
T Consensus 129 ~~a~~~--~~~g~~g~v~~~------------------------------~~~~~ir~~~~-~-~~~vtPGI~~~g~~~~ 174 (213)
T TIGR01740 129 EYAKEA--KAFGLDGPVCSA------------------------------EEAKEIRKFTG-D-FLILTPGIRLQSKGAD 174 (213)
T ss_pred HHHHHh--hhcCCeEEEeCH------------------------------HHHHHHHHhcC-C-ceEEeCCcCCCCCCcC
Confidence 566666 667777764221 33556666665 3 57889999743 222
Q ss_pred --------HHHHHhccCeeeehhHHhhcCchH
Q psy5880 275 --------FEKIKAGASLVQIYTSFVYHGPPL 298 (328)
Q Consensus 275 --------~~~l~~GAd~V~vg~a~l~~gp~~ 298 (328)
.++.++|||.+.+||++. +.++.
T Consensus 175 dq~~~~~~~~~~~~Gad~iVvGr~I~-~~~d~ 205 (213)
T TIGR01740 175 DQQRVVTLEDAKEAGADVIIVGRGIY-AAEDP 205 (213)
T ss_pred CccccCCHHHHHHcCCCEEEEChhhc-CCCCH
Confidence 677789999999999986 44553
No 293
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.62 E-value=0.023 Score=49.54 Aligned_cols=109 Identities=21% Similarity=0.257 Sum_probs=69.5
Q ss_pred HHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhcc
Q psy5880 125 SVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLD 204 (328)
Q Consensus 125 ~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~ 204 (328)
-++.+.+++ ++++. +|+.. .++++..++ .++|++-= -+| ..++..+
T Consensus 72 ~a~~a~~aG--A~Fiv----SP~~~-----------~~v~~~~~~--------~~i~~iPG---~~T---ptEi~~A--- 117 (196)
T PF01081_consen 72 QAEAAIAAG--AQFIV----SPGFD-----------PEVIEYARE--------YGIPYIPG---VMT---PTEIMQA--- 117 (196)
T ss_dssp HHHHHHHHT---SEEE----ESS-------------HHHHHHHHH--------HTSEEEEE---ESS---HHHHHHH---
T ss_pred HHHHHHHcC--CCEEE----CCCCC-----------HHHHHHHHH--------cCCcccCC---cCC---HHHHHHH---
Confidence 344555566 88887 67752 244444333 36777632 244 3455554
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCe
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASL 284 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~ 284 (328)
.++|++.+-++-. +..| +..+++.++.-++ +++++.+|||+. +.+.+++++|+.+
T Consensus 118 ~~~G~~~vK~FPA-----------------~~~G------G~~~ik~l~~p~p-~~~~~ptGGV~~-~N~~~~l~ag~~~ 172 (196)
T PF01081_consen 118 LEAGADIVKLFPA-----------------GALG------GPSYIKALRGPFP-DLPFMPTGGVNP-DNLAEYLKAGAVA 172 (196)
T ss_dssp HHTT-SEEEETTT-----------------TTTT------HHHHHHHHHTTTT-T-EEEEBSS--T-TTHHHHHTSTTBS
T ss_pred HHCCCCEEEEecc-----------------hhcC------cHHHHHHHhccCC-CCeEEEcCCCCH-HHHHHHHhCCCEE
Confidence 5899999976632 1111 1477888888775 699999999975 8999999999999
Q ss_pred eeehhHHh
Q psy5880 285 VQIYTSFV 292 (328)
Q Consensus 285 V~vg~a~l 292 (328)
|.+|+.+.
T Consensus 173 vg~Gs~L~ 180 (196)
T PF01081_consen 173 VGGGSWLF 180 (196)
T ss_dssp EEEESGGG
T ss_pred EEECchhc
Confidence 99999986
No 294
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.61 E-value=0.021 Score=50.76 Aligned_cols=92 Identities=17% Similarity=0.238 Sum_probs=63.8
Q ss_pred CEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCc
Q psy5880 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKL 260 (328)
Q Consensus 181 Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~i 260 (328)
||+.=++. .+.++...+++.+ .+.|+..+-++-++.. +++.++++++..+.+.
T Consensus 16 ~vi~Vvr~-~~~~~a~~~~~al--~~gGi~~iEiT~~tp~------------------------a~~~i~~l~~~~~~~~ 68 (222)
T PRK07114 16 GMVPVFYH-ADVEVAKKVIKAC--YDGGARVFEFTNRGDF------------------------AHEVFAELVKYAAKEL 68 (222)
T ss_pred CEEEEEEc-CCHHHHHHHHHHH--HHCCCCEEEEeCCCCc------------------------HHHHHHHHHHHHHhhC
Confidence 44333333 3566789999999 9999999988765432 3566777664432222
Q ss_pred --cEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 261 --PIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 261 --pvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
-++|.|-|.|.+++.+++++||++++ |..+ +|++++..+
T Consensus 69 p~~~vGaGTVl~~e~a~~a~~aGA~FiV--sP~~--~~~v~~~~~ 109 (222)
T PRK07114 69 PGMILGVGSIVDAATAALYIQLGANFIV--TPLF--NPDIAKVCN 109 (222)
T ss_pred CCeEEeeEeCcCHHHHHHHHHcCCCEEE--CCCC--CHHHHHHHH
Confidence 38999999999999999999999885 2222 355555543
No 295
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=96.57 E-value=0.14 Score=46.23 Aligned_cols=91 Identities=18% Similarity=0.095 Sum_probs=62.6
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.+.||.+|=....+.+++...++.+ ...|-+-|.+.-|...+ |+.. ....+..+..+++. .
T Consensus 115 t~kpV~lKrG~~~t~~e~l~aaeyi--~~~Gn~~viLcERG~tf-------------~y~r---~~~D~~~ip~~k~~-~ 175 (258)
T TIGR01362 115 TGRIVNVKKGQFLSPWDMKNVVEKV--LSTGNKNILLCERGTSF-------------GYNN---LVVDMRSLPIMREL-G 175 (258)
T ss_pred cCCeEEecCCCcCCHHHHHHHHHHH--HHcCCCcEEEEeCCCCc-------------CCCC---cccchhhhHHHHhc-C
Confidence 5789999999888988999999999 89999888887654321 1211 11224455555654 4
Q ss_pred CCccEEEe---------------cCCCCH--HHHHHHHHhccCeeeehh
Q psy5880 258 GKLPIIGV---------------GGVFSG--KDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 258 ~~ipvia~---------------GGI~s~--~da~~~l~~GAd~V~vg~ 289 (328)
+|||.- ||.++. .-+..++.+|||++++=+
T Consensus 176 --~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 176 --CPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred --CCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 899862 554443 235567889999999865
No 296
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=96.53 E-value=0.037 Score=50.94 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=42.3
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHH-HHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccC
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKST-ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGAS 283 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l-~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd 283 (328)
.++|+|+|-+.+-... .+ +.++.+++.. .++|++++||| +.+.+.++.++|+|
T Consensus 200 ~~~gaD~I~ld~~~p~------------------------~l~~~~~~~~~~~-~~i~i~AsGGI-~~~ni~~~~~~Gvd 253 (272)
T cd01573 200 AEAGADILQLDKFSPE------------------------ELAELVPKLRSLA-PPVLLAAAGGI-NIENAAAYAAAGAD 253 (272)
T ss_pred HHcCCCEEEECCCCHH------------------------HHHHHHHHHhccC-CCceEEEECCC-CHHHHHHHHHcCCc
Confidence 5799999976653211 11 3333344432 24999999999 89999999999999
Q ss_pred eeeehhH
Q psy5880 284 LVQIYTS 290 (328)
Q Consensus 284 ~V~vg~a 290 (328)
.|.+++.
T Consensus 254 ~I~vsai 260 (272)
T cd01573 254 ILVTSAP 260 (272)
T ss_pred EEEEChh
Confidence 9955543
No 297
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.51 E-value=0.035 Score=49.33 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=79.5
Q ss_pred hHHHHHHHhhcC-ccceEEeccCCCCCc------CccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccc
Q psy5880 43 QFWLLGILKFGD-VAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEK 115 (328)
Q Consensus 43 ~~y~~~~~~l~~-~~~~v~~n~sspN~~------gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n 115 (328)
++|.+.++.+.. -.|.+++|.+||++- |-.-..+++-+.++++++++.. ..|+.+|+..+.+
T Consensus 67 ~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~-------~~~v~vk~r~~~~---- 135 (231)
T cd02801 67 ETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV-------PIPVTVKIRLGWD---- 135 (231)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc-------CCCEEEEEeeccC----
Confidence 467777776655 478999999999752 2122235666777777776553 1477777654321
Q ss_pred cchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhH
Q psy5880 116 KDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEK 195 (328)
Q Consensus 116 ~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~ 195 (328)
..+...++++.+..++ +|+|.++-. .... +. .+..-.+.++.+++. .++||++ ..++. ..
T Consensus 136 --~~~~~~~~~~~l~~~G--vd~i~v~~~--~~~~-~~--~~~~~~~~~~~i~~~-------~~ipvi~--~Ggi~--~~ 195 (231)
T cd02801 136 --DEEETLELAKALEDAG--ASALTVHGR--TREQ-RY--SGPADWDYIAEIKEA-------VSIPVIA--NGDIF--SL 195 (231)
T ss_pred --CchHHHHHHHHHHHhC--CCEEEECCC--CHHH-cC--CCCCCHHHHHHHHhC-------CCCeEEE--eCCCC--CH
Confidence 0124566666666665 899986532 1111 00 001112444555543 5788876 33332 13
Q ss_pred HHHHHHhccccCCccEEEEec
Q psy5880 196 KDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~n 216 (328)
.++.+.+ ...|+|+|.+.-
T Consensus 196 ~d~~~~l--~~~gad~V~igr 214 (231)
T cd02801 196 EDALRCL--EQTGVDGVMIGR 214 (231)
T ss_pred HHHHHHH--HhcCCCEEEEcH
Confidence 4555555 445899986553
No 298
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.50 E-value=0.016 Score=50.88 Aligned_cols=90 Identities=21% Similarity=0.280 Sum_probs=66.7
Q ss_pred CEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCc
Q psy5880 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKL 260 (328)
Q Consensus 181 Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~i 260 (328)
|++.=++.. +.++..++++.+ .+.|+..+-++.++. ..++.++++++..+ +
T Consensus 9 ~liaVlr~~-~~e~a~~~~~al--~~~Gi~~iEit~~t~------------------------~a~~~i~~l~~~~~-~- 59 (204)
T TIGR01182 9 KIVPVIRID-DVDDALPLAKAL--IEGGLRVLEVTLRTP------------------------VALDAIRLLRKEVP-D- 59 (204)
T ss_pred CEEEEEecC-CHHHHHHHHHHH--HHcCCCEEEEeCCCc------------------------cHHHHHHHHHHHCC-C-
Confidence 454444443 556788999999 999999998876542 24678888988876 3
Q ss_pred cEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 261 PIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 261 pvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
-++|.|.|.|.+++.+++++||+++. .-.+ +|++++..+
T Consensus 60 ~~vGAGTVl~~~~a~~a~~aGA~Fiv-sP~~---~~~v~~~~~ 98 (204)
T TIGR01182 60 ALIGAGTVLNPEQLRQAVDAGAQFIV-SPGL---TPELAKHAQ 98 (204)
T ss_pred CEEEEEeCCCHHHHHHHHHcCCCEEE-CCCC---CHHHHHHHH
Confidence 57999999999999999999999984 3222 355555443
No 299
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=96.50 E-value=0.041 Score=51.68 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=60.0
Q ss_pred EEEEeCCCCChhhHHHHHHHhccccCC--ccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCC
Q psy5880 182 ILVKIAPDLSLDEKKDIADVVLDSKCK--VDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGK 259 (328)
Q Consensus 182 v~vKl~~~~~~~~~~~~a~~l~~~~~G--~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ 259 (328)
+++=++.+.+.++...+.. + .++| +|.|++-.. .|+| ...++.++.+++.++
T Consensus 83 L~v~~SvG~t~e~~~r~~~-l--v~a~~~~d~i~~D~a----------------hg~s-----~~~~~~i~~i~~~~p-- 136 (321)
T TIGR01306 83 LFASISVGVKACEYEFVTQ-L--AEEALTPEYITIDIA----------------HGHS-----NSVINMIKHIKTHLP-- 136 (321)
T ss_pred cEEEEEcCCCHHHHHHHHH-H--HhcCCCCCEEEEeCc----------------cCch-----HHHHHHHHHHHHhCC--
Confidence 3566666667666666544 5 5777 688865421 1111 235688999999887
Q ss_pred ccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 260 LPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 260 ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
.|.+..|+|.|++++..++++|||+|-++
T Consensus 137 ~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 137 DSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 78899999999999999999999999877
No 300
>PRK06852 aldolase; Validated
Probab=96.50 E-value=0.14 Score=47.64 Aligned_cols=117 Identities=19% Similarity=0.154 Sum_probs=66.0
Q ss_pred CCCCEEEEeCC---CC----ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHH
Q psy5880 178 PLPPILVKIAP---DL----SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELIS 250 (328)
Q Consensus 178 ~~~Pv~vKl~~---~~----~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~ 250 (328)
..+|+++=+-| .+ +.+-+...++.. .+.|+|.|-+--++.. ++ |. .+..+
T Consensus 166 ~GlPll~~~yprG~~i~~~~~~~~ia~aaRia--aELGADIVKv~y~~~~-------------~~--g~------~e~f~ 222 (304)
T PRK06852 166 HGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVA--ACLGADFVKVNYPKKE-------------GA--NP------AELFK 222 (304)
T ss_pred hCCcEEEEeeccCcccCCCccHHHHHHHHHHH--HHHcCCEEEecCCCcC-------------CC--CC------HHHHH
Confidence 68999873222 11 223455667777 8999998854322110 00 11 13344
Q ss_pred HHHHHcCCCccEEEecCCCC-HHHHH----HHHH-hccCeeeehhHHhhc-CchHHHHHHHHHHHHHHHhCCCCHHHH
Q psy5880 251 EMYKLTKGKLPIIGVGGVFS-GKDAF----EKIK-AGASLVQIYTSFVYH-GPPLVTRIKSELEELLQKEGYNSVSQA 321 (328)
Q Consensus 251 ~i~~~~~~~ipvia~GGI~s-~~da~----~~l~-~GAd~V~vg~a~l~~-gp~~~~~i~~~l~~~m~~~g~~si~e~ 321 (328)
++.+.. +.+||+..||=++ .+++. ++++ +||..|.+||=++.+ +|+ ...+.+.+.... |+-.|++|.
T Consensus 223 ~vv~~~-g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p~-~~~~~~Ai~~IV--H~~~s~~eA 296 (304)
T PRK06852 223 EAVLAA-GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLDE-AVRMCNAIYAIT--VEDKSVEEA 296 (304)
T ss_pred HHHHhC-CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCch-HHHHHHHHHHHH--hCCCCHHHH
Confidence 455555 1399998888774 34444 4556 899999999988643 232 234444444433 343466554
No 301
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.49 E-value=0.016 Score=50.78 Aligned_cols=90 Identities=13% Similarity=0.217 Sum_probs=66.8
Q ss_pred CEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCc
Q psy5880 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKL 260 (328)
Q Consensus 181 Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~i 260 (328)
|++.=++. .+.++...+++.+ .+.|+..|-++.++. ..++.++++++..+ =
T Consensus 5 ~vv~Vir~-~~~~~a~~ia~al--~~gGi~~iEit~~tp------------------------~a~~~I~~l~~~~~--~ 55 (201)
T PRK06015 5 PVIPVLLI-DDVEHAVPLARAL--AAGGLPAIEITLRTP------------------------AALDAIRAVAAEVE--E 55 (201)
T ss_pred CEEEEEEc-CCHHHHHHHHHHH--HHCCCCEEEEeCCCc------------------------cHHHHHHHHHHHCC--C
Confidence 44444443 3556789999999 999999998876542 24688888888876 3
Q ss_pred cEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 261 PIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 261 pvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
-+||.|.|.|.+++.+++++||+++. |..+ +|++++..+
T Consensus 56 ~~vGAGTVl~~e~a~~ai~aGA~Fiv--SP~~--~~~vi~~a~ 94 (201)
T PRK06015 56 AIVGAGTILNAKQFEDAAKAGSRFIV--SPGT--TQELLAAAN 94 (201)
T ss_pred CEEeeEeCcCHHHHHHHHHcCCCEEE--CCCC--CHHHHHHHH
Confidence 68999999999999999999999885 3322 355555443
No 302
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.49 E-value=0.089 Score=47.59 Aligned_cols=127 Identities=14% Similarity=0.141 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCC-hhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLS-LDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG 238 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~-~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg 238 (328)
+.+++..++...+. ..+|+++.+..++. .+++.+.++.+ .++|+++|.+=...... ..|.+.+
T Consensus 54 ~~e~~~~~~~I~~~----~~~Pv~~D~~~G~g~~~~~~~~v~~~--~~~G~~gv~iED~~~~k----------~~g~~~~ 117 (243)
T cd00377 54 LDEVLAAVRRIARA----VDLPVIADADTGYGNALNVARTVREL--EEAGAAGIHIEDQVGPK----------KCGHHGG 117 (243)
T ss_pred HHHHHHHHHHHHhh----ccCCEEEEcCCCCCCHHHHHHHHHHH--HHcCCEEEEEecCCCCc----------cccCCCC
Confidence 34444444444332 68899999987653 34577778888 89999999885433210 1122233
Q ss_pred CcCch--HHHHHHHHHHHHcCC--CccEEEe-----cCCCCHHHHHH----HHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 239 EPLRN--KSTELISEMYKLTKG--KLPIIGV-----GGVFSGKDAFE----KIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 239 ~~~~~--~~l~~v~~i~~~~~~--~ipvia~-----GGI~s~~da~~----~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
....+ ...+.++.+++..++ +++|++- -|-...+++.+ +.++|||+|.+-... +++.++++.+.
T Consensus 118 ~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~~~~ 194 (243)
T cd00377 118 KVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK---DPEEIRAFAEA 194 (243)
T ss_pred CeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHhc
Confidence 33322 234555555555544 6888886 32234555543 456999999986543 46777777665
No 303
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.46 E-value=0.16 Score=45.95 Aligned_cols=91 Identities=20% Similarity=0.109 Sum_probs=61.7
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.+.||.+|=....+.+++...++.+ ...|-.-|.+.-|...+ +|.. ....+..+..+++ ..
T Consensus 123 t~kpV~lKrG~~~t~~e~~~aaeyi--~~~Gn~~vilcERG~tf-------------~y~r---~~~D~~~vp~~k~-~~ 183 (264)
T PRK05198 123 TGKVVNIKKGQFLAPWDMKNVVDKV--REAGNDKIILCERGTSF-------------GYNN---LVVDMRGLPIMRE-TG 183 (264)
T ss_pred cCCeEEecCCCcCCHHHHHHHHHHH--HHcCCCeEEEEeCCCCc-------------CCCC---eeechhhhHHHhh-CC
Confidence 5789999999889999999999999 88998888887654321 1211 1122344555555 33
Q ss_pred CCccEEEe---------------cCCCCH--HHHHHHHHhccCeeeehh
Q psy5880 258 GKLPIIGV---------------GGVFSG--KDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 258 ~~ipvia~---------------GGI~s~--~da~~~l~~GAd~V~vg~ 289 (328)
+|||.- ||-++. .-+..++.+|||.+++=+
T Consensus 184 --lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEv 230 (264)
T PRK05198 184 --APVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIET 230 (264)
T ss_pred --CCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 888852 444433 235567789999999864
No 304
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.46 E-value=0.034 Score=51.04 Aligned_cols=32 Identities=9% Similarity=0.184 Sum_probs=28.6
Q ss_pred CccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 259 KLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 259 ~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
++||.++||| |++.+.++.++|||.+.+|+..
T Consensus 227 ~i~i~asGGI-t~~ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 227 RVLLEASGGI-TLENIRAYAETGVDVISTGALT 258 (269)
T ss_pred CeEEEEECCC-CHHHHHHHHHcCCCEEEEcHHH
Confidence 5999999999 5899999999999999987554
No 305
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.42 E-value=0.014 Score=58.33 Aligned_cols=69 Identities=25% Similarity=0.297 Sum_probs=53.4
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..+.++.+ .++|+|.|++.... |. .+..++.++++++.++ +++|++ |.|.|.+++
T Consensus 242 ~~~~~~~l--~~ag~d~i~id~a~----------------G~-----s~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a 296 (495)
T PTZ00314 242 DIERAAAL--IEAGVDVLVVDSSQ----------------GN-----SIYQIDMIKKLKSNYP-HVDIIA-GNVVTADQA 296 (495)
T ss_pred HHHHHHHH--HHCCCCEEEEecCC----------------CC-----chHHHHHHHHHHhhCC-CceEEE-CCcCCHHHH
Confidence 36677888 89999999875421 11 1234688999998874 477777 999999999
Q ss_pred HHHHHhccCeeeeh
Q psy5880 275 FEKIKAGASLVQIY 288 (328)
Q Consensus 275 ~~~l~~GAd~V~vg 288 (328)
..++++|||+|-+|
T Consensus 297 ~~~~~aGad~I~vg 310 (495)
T PTZ00314 297 KNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHcCCCEEEEC
Confidence 99999999999764
No 306
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.38 E-value=0.18 Score=48.26 Aligned_cols=94 Identities=16% Similarity=0.091 Sum_probs=63.6
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEec-CCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN-TTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT 256 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n-~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~ 256 (328)
.++||++|-....+.+++...++.+ .+.|..-|.+.. .+..++ .+......+..+..+++..
T Consensus 224 ~gkPVilk~G~~~t~~e~~~Ave~i--~~~Gn~~i~L~erg~s~yp---------------~~~~~~ldl~~i~~lk~~~ 286 (360)
T PRK12595 224 VNKPVLLKRGLSATIEEFIYAAEYI--MSQGNGQIILCERGIRTYE---------------KATRNTLDISAVPILKQET 286 (360)
T ss_pred cCCcEEEeCCCCCCHHHHHHHHHHH--HHCCCCCEEEECCccCCCC---------------CCCCCCcCHHHHHHHHHHh
Confidence 5789999998877888999999999 888986666553 222211 0101123578888888877
Q ss_pred CCCccEEE-e---cCCCCHH--HHHHHHHhccCeeeehhH
Q psy5880 257 KGKLPIIG-V---GGVFSGK--DAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 257 ~~~ipvia-~---GGI~s~~--da~~~l~~GAd~V~vg~a 290 (328)
. +||+. + +|-++.. -+..++.+|||++++=+-
T Consensus 287 ~--~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H 324 (360)
T PRK12595 287 H--LPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVH 324 (360)
T ss_pred C--CCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEec
Confidence 6 99888 3 3322222 555678899997777553
No 307
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.30 E-value=0.23 Score=46.18 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=55.5
Q ss_pred HHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecC--CCCHHHHHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGG--VFSGKDAFE 276 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GG--I~s~~da~~ 276 (328)
+..+ .+.|+|++-++-++. .|-|.++ ..+..++.++++++.++ ++|+++-|| | +.+++.+
T Consensus 159 a~~f--~~tgvD~LAv~iG~v-------------HG~y~t~-~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi-~~e~~~~ 220 (293)
T PRK07315 159 AKAM--VETGIDFLAAGIGNI-------------HGPYPEN-WEGLDLDHLEKLTEAVP-GFPIVLHGGSGI-PDDQIQE 220 (293)
T ss_pred HHHH--HHcCCCEEeeccccc-------------cccCCCC-CCcCCHHHHHHHHHhcc-CCCEEEECCCCC-CHHHHHH
Confidence 3445 577999997763211 1223321 11356788999999883 399999999 7 5577999
Q ss_pred HHHhccCeeeehhHHhh
Q psy5880 277 KIKAGASLVQIYTSFVY 293 (328)
Q Consensus 277 ~l~~GAd~V~vg~a~l~ 293 (328)
+++.|++-|-++|.+..
T Consensus 221 ~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 221 AIKLGVAKVNVNTECQI 237 (293)
T ss_pred HHHcCCCEEEEccHHHH
Confidence 99999999999999964
No 308
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=96.29 E-value=0.041 Score=49.73 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=60.3
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..++|+.. +++|+.+|.+-.-.. .+.| +++.++.+++.++ +||+.-+.|-++.+
T Consensus 62 d~~~~A~~y--~~~GA~aISVlTe~~---------------~F~G------s~~~l~~v~~~v~--~PvL~KDFIid~~Q 116 (247)
T PRK13957 62 HPVQIAKTY--ETLGASAISVLTDQS---------------YFGG------SLEDLKSVSSELK--IPVLRKDFILDEIQ 116 (247)
T ss_pred CHHHHHHHH--HHCCCcEEEEEcCCC---------------cCCC------CHHHHHHHHHhcC--CCEEeccccCCHHH
Confidence 467899999 999999997653210 0222 3588899999887 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHh
Q psy5880 274 AFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l 292 (328)
+.++...|||+|.+--+++
T Consensus 117 I~ea~~~GADavLLI~~~L 135 (247)
T PRK13957 117 IREARAFGASAILLIVRIL 135 (247)
T ss_pred HHHHHHcCCCEEEeEHhhC
Confidence 9999999999998887776
No 309
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.24 E-value=0.019 Score=56.76 Aligned_cols=69 Identities=26% Similarity=0.297 Sum_probs=53.0
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..+-++.+ .++|+|.|.+..+.. . ....++.++.+++.++ ++||++ |+|.|++++
T Consensus 225 ~~~r~~~L--~~aG~d~I~vd~a~g----------------~-----~~~~~~~i~~i~~~~~-~~~vi~-G~v~t~~~a 279 (450)
T TIGR01302 225 DKERAEAL--VKAGVDVIVIDSSHG----------------H-----SIYVIDSIKEIKKTYP-DLDIIA-GNVATAEQA 279 (450)
T ss_pred HHHHHHHH--HHhCCCEEEEECCCC----------------c-----HhHHHHHHHHHHHhCC-CCCEEE-EeCCCHHHH
Confidence 34556677 899999998754321 1 1235688999998864 489888 999999999
Q ss_pred HHHHHhccCeeeeh
Q psy5880 275 FEKIKAGASLVQIY 288 (328)
Q Consensus 275 ~~~l~~GAd~V~vg 288 (328)
..++.+|||+|-+|
T Consensus 280 ~~l~~aGad~i~vg 293 (450)
T TIGR01302 280 KALIDAGADGLRVG 293 (450)
T ss_pred HHHHHhCCCEEEEC
Confidence 99999999999765
No 310
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.22 E-value=0.053 Score=50.62 Aligned_cols=89 Identities=22% Similarity=0.360 Sum_probs=62.9
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+|+|.+.+++...+ -+| ...-.+.++.+++.+++++|||+.-|=.
T Consensus 22 vD~~a~~~lv~~l--i~~Gv~gi~~~GttGE~~------------~Ls----~eEr~~v~~~~v~~~~grvpviaG~g~~ 83 (299)
T COG0329 22 VDEEALRRLVEFL--IAAGVDGLVVLGTTGESP------------TLT----LEERKEVLEAVVEAVGGRVPVIAGVGSN 83 (299)
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECCCCccch------------hcC----HHHHHHHHHHHHHHHCCCCcEEEecCCC
Confidence 5556788999999 999999999888765421 011 1123456777788888889999766656
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhcCch
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYHGPP 297 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~gp~ 297 (328)
+-+++.+.- +.|||++++-+..+++ |.
T Consensus 84 ~t~eai~lak~a~~~Gad~il~v~PyY~k-~~ 114 (299)
T COG0329 84 STAEAIELAKHAEKLGADGILVVPPYYNK-PS 114 (299)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeCCCCcC-CC
Confidence 555555433 4899999999998755 53
No 311
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=96.20 E-value=0.027 Score=59.14 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcC-CCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 244 KSTELISEMYKLTK-GKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 244 ~~l~~v~~i~~~~~-~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
.+++.++++++.++ .++||++-||| +++++.+++++||+.|.+.++++.
T Consensus 150 lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~ 199 (755)
T PRK09517 150 LGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMA 199 (755)
T ss_pred CCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhC
Confidence 34566777776653 13999999999 999999999999999999999973
No 312
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.16 E-value=0.23 Score=46.03 Aligned_cols=129 Identities=15% Similarity=0.124 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCC-
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG- 238 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg- 238 (328)
+.+++..++...+. .++||++.+-.+.+...+...++.+ .++|+.+|++=..... ..+|+.|
T Consensus 63 ~~e~~~~~~~I~~a----~~~Pv~~D~d~Gg~~~~v~r~V~~l--~~aGvaGi~iEDq~~p-----------k~cg~~~~ 125 (285)
T TIGR02320 63 WTQRLDVVEFMFDV----TTKPIILDGDTGGNFEHFRRLVRKL--ERRGVSAVCIEDKLGL-----------KKNSLFGN 125 (285)
T ss_pred HHHHHHHHHHHHhh----cCCCEEEecCCCCCHHHHHHHHHHH--HHcCCeEEEEeccCCC-----------ccccccCC
Confidence 34444444444322 6899999997775656777888999 8999999988432211 0111111
Q ss_pred C---cCch--HHHHHHHHHHHH-cCCCccEEEecC----CCCHHHHH----HHHHhccCeeeehhHHhhcCchHHHHHHH
Q psy5880 239 E---PLRN--KSTELISEMYKL-TKGKLPIIGVGG----VFSGKDAF----EKIKAGASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 239 ~---~~~~--~~l~~v~~i~~~-~~~~ipvia~GG----I~s~~da~----~~l~~GAd~V~vg~a~l~~gp~~~~~i~~ 304 (328)
. ...+ ...+.|+.+++. .+.+++|++--. -...+++. .+.++|||+|.+-... .+++-+.++.+
T Consensus 126 ~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~--~~~~ei~~~~~ 203 (285)
T TIGR02320 126 DVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRK--KDPDEILEFAR 203 (285)
T ss_pred CCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCC--CCHHHHHHHHH
Confidence 1 1222 223444444443 344688887622 22355554 4556999999986222 34566666665
Q ss_pred HHH
Q psy5880 305 ELE 307 (328)
Q Consensus 305 ~l~ 307 (328)
.+.
T Consensus 204 ~~~ 206 (285)
T TIGR02320 204 RFR 206 (285)
T ss_pred Hhh
Confidence 543
No 313
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.15 E-value=0.077 Score=46.95 Aligned_cols=90 Identities=23% Similarity=0.296 Sum_probs=65.7
Q ss_pred CEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCc
Q psy5880 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKL 260 (328)
Q Consensus 181 Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~i 260 (328)
+++.=++. .+.++...+++.+ .+.|++.|-++-++ |.+++.++++++..+ =
T Consensus 16 ~~iaV~r~-~~~~~a~~i~~al--~~~Gi~~iEitl~~------------------------~~~~~~I~~l~~~~p--~ 66 (212)
T PRK05718 16 PVVPVIVI-NKLEDAVPLAKAL--VAGGLPVLEVTLRT------------------------PAALEAIRLIAKEVP--E 66 (212)
T ss_pred CEEEEEEc-CCHHHHHHHHHHH--HHcCCCEEEEecCC------------------------ccHHHHHHHHHHHCC--C
Confidence 44333333 3556789999999 99999998777432 234688899988876 3
Q ss_pred cEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 261 PIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 261 pvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
-+|+.|-|.+.+++.+++++||+.+.. ..+ +|++++..+
T Consensus 67 ~~IGAGTVl~~~~a~~a~~aGA~Fivs--P~~--~~~vi~~a~ 105 (212)
T PRK05718 67 ALIGAGTVLNPEQLAQAIEAGAQFIVS--PGL--TPPLLKAAQ 105 (212)
T ss_pred CEEEEeeccCHHHHHHHHHcCCCEEEC--CCC--CHHHHHHHH
Confidence 689999999999999999999998863 221 255555544
No 314
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.15 E-value=0.06 Score=50.49 Aligned_cols=140 Identities=15% Similarity=0.175 Sum_probs=78.4
Q ss_pred HHHHHHHhhcC-ccceEEeccCCCCC------cCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCccccccc
Q psy5880 44 FWLLGILKFGD-VAHYFVVNVSSPNT------ANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKK 116 (328)
Q Consensus 44 ~y~~~~~~l~~-~~~~v~~n~sspN~------~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~ 116 (328)
...+.++.+.. ..|.|.+|..||-. .|-.=+.+++.+.++++++++.. ..|+-+|+-.+..
T Consensus 67 ~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~-------~~pvsvKiR~g~~----- 134 (309)
T PF01207_consen 67 DLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAV-------PIPVSVKIRLGWD----- 134 (309)
T ss_dssp HHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH--------SSEEEEEEESECT-----
T ss_pred HHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhccc-------ccceEEecccccc-----
Confidence 34444455555 56999999999943 34445568889999999998874 2688888776542
Q ss_pred chhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHH
Q psy5880 117 DIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKK 196 (328)
Q Consensus 117 ~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~ 196 (328)
.+.+...++++.+..++ +++|.+|.-.+... .+ +..--+.+..+++. .++||+.= .++. ...
T Consensus 135 ~~~~~~~~~~~~l~~~G--~~~i~vH~Rt~~q~-~~----~~a~w~~i~~i~~~-------~~ipvi~N--GdI~--s~~ 196 (309)
T PF01207_consen 135 DSPEETIEFARILEDAG--VSAITVHGRTRKQR-YK----GPADWEAIAEIKEA-------LPIPVIAN--GDIF--SPE 196 (309)
T ss_dssp --CHHHHHHHHHHHHTT----EEEEECS-TTCC-CT----S---HHHHHHCHHC--------TSEEEEE--SS----SHH
T ss_pred cchhHHHHHHHHhhhcc--cceEEEecCchhhc-CC----cccchHHHHHHhhc-------ccceeEEc--CccC--CHH
Confidence 12355778888888887 99999886533321 11 11223344444443 45787764 3332 244
Q ss_pred HHHHHhccccCCccEEEEe
Q psy5880 197 DIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~ 215 (328)
++.+.+ ...|+|+|.+.
T Consensus 197 d~~~~~--~~tg~dgvMig 213 (309)
T PF01207_consen 197 DAERML--EQTGADGVMIG 213 (309)
T ss_dssp HHHHHC--CCH-SSEEEES
T ss_pred HHHHHH--HhcCCcEEEEc
Confidence 555556 66799999664
No 315
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.10 E-value=0.34 Score=44.37 Aligned_cols=91 Identities=13% Similarity=0.045 Sum_probs=60.4
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.+.||.+|=....+.+++...++.+ ...|-+-|.+.-|...+ ||.- ....++.+..+++ ..
T Consensus 129 tgkpV~lKkGq~~t~~e~~~aaeki--~~~GN~~viLcERG~tF-------------gy~~---lv~D~r~ip~mk~-~~ 189 (290)
T PLN03033 129 TGKIINIKKGQFCAPSVMRNSAEKV--RLAGNPNVMVCERGTMF-------------GYND---LIVDPRNLEWMRE-AN 189 (290)
T ss_pred cCCeEEeCCCCCCCHHHHHHHHHHH--HHcCCCcEEEEeCCCCc-------------CCCC---cccchhhhHHHHh-cC
Confidence 5789999999999999999999999 89999888887654321 1111 1122344444554 33
Q ss_pred CCccEEE----------------e----cCCCCH--HHHHHHHHhccCeeeehh
Q psy5880 258 GKLPIIG----------------V----GGVFSG--KDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 258 ~~ipvia----------------~----GGI~s~--~da~~~l~~GAd~V~vg~ 289 (328)
+|||. . ||-+.. .-+..++.+|||.+++=+
T Consensus 190 --lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiEv 241 (290)
T PLN03033 190 --CPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEV 241 (290)
T ss_pred --CCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 78885 1 333332 235567789999999865
No 316
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.08 E-value=0.081 Score=46.87 Aligned_cols=92 Identities=23% Similarity=0.253 Sum_probs=66.6
Q ss_pred CEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCC-
Q psy5880 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGK- 259 (328)
Q Consensus 181 Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~- 259 (328)
|++.=++.. +.++...+++.| .+.|+..+-++-++. .+++.++++++..+.+
T Consensus 14 ~vi~vir~~-~~~~a~~~~~al--~~~Gi~~iEit~~~~------------------------~a~~~i~~l~~~~~~~p 66 (213)
T PRK06552 14 GVVAVVRGE-SKEEALKISLAV--IKGGIKAIEVTYTNP------------------------FASEVIKELVELYKDDP 66 (213)
T ss_pred CEEEEEECC-CHHHHHHHHHHH--HHCCCCEEEEECCCc------------------------cHHHHHHHHHHHcCCCC
Confidence 444444443 556789999999 999999998776542 2468888898876421
Q ss_pred ccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 260 LPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 260 ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
=-++|.|-|.|.+++.+++++||++++ +..+ +|++++..+
T Consensus 67 ~~~vGaGTV~~~~~~~~a~~aGA~Fiv--sP~~--~~~v~~~~~ 106 (213)
T PRK06552 67 EVLIGAGTVLDAVTARLAILAGAQFIV--SPSF--NRETAKICN 106 (213)
T ss_pred CeEEeeeeCCCHHHHHHHHHcCCCEEE--CCCC--CHHHHHHHH
Confidence 137999999999999999999999986 3332 355555443
No 317
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=96.07 E-value=0.1 Score=47.08 Aligned_cols=93 Identities=18% Similarity=0.181 Sum_probs=64.0
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.++||++|=...-|.+++...|+.+ ...|-..|++.-+.... +...--....+..|..+|+...
T Consensus 151 ~~kPvLLKRg~~aTieEwL~AAEYI--~s~GN~~vILCERGIRt--------------fe~~TRntLDi~aV~~~kq~TH 214 (286)
T COG2876 151 QNKPVLLKRGLSATIEEWLNAAEYI--LSHGNGNVILCERGIRT--------------FEKATRNTLDISAVPILKQETH 214 (286)
T ss_pred cCCCeEEecCccccHHHHHHHHHHH--HhCCCCcEEEEeccccc--------------ccccccceechHHHHHHHhhcC
Confidence 5899999999988999999999999 88998888877653210 0000001234677888888876
Q ss_pred CCccEEEe----cCCCCHHH--HHHHHHhccCeeeeh
Q psy5880 258 GKLPIIGV----GGVFSGKD--AFEKIKAGASLVQIY 288 (328)
Q Consensus 258 ~~ipvia~----GGI~s~~d--a~~~l~~GAd~V~vg 288 (328)
+|||+. .|=++.-. +..++.+|||++|+=
T Consensus 215 --LPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 215 --LPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred --CCEEECCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 999974 23233222 445677999999874
No 318
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=96.06 E-value=0.18 Score=48.25 Aligned_cols=139 Identities=15% Similarity=0.161 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCC-hhhHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLS-LDEKKDI 198 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~-~~~~~~~ 198 (328)
..-.+++.++.+++ +-+.+++- .....+++ ..+-++.+|+.. .+.|+++=|..... .-+..++
T Consensus 77 ~in~~La~~a~~~G-----~~~~~Gs~----~~~~~~~~-~~~~~~~vr~~~------p~~p~~aNl~~~~~~~~~~~~~ 140 (352)
T PRK05437 77 EINRKLAEAAEELG-----IAMGVGSQ----RAALKDPE-LADSFSVVRKVA------PDGLLFANLGAVQLYGYGVEEA 140 (352)
T ss_pred HHHHHHHHHHHHcC-----CCeEeccc----HhhccChh-hHHHHHHHHHHC------CCceEEeecCccccCCCCHHHH
Confidence 34478888888776 33333321 11123444 555566666651 47899997765311 0012344
Q ss_pred HHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEE--ecCCCCHHHHHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIG--VGGVFSGKDAFE 276 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia--~GGI~s~~da~~ 276 (328)
.+++ ...++|++.++-...+. .. . ..|...+...++.++.+++.++ +||+. +|.-.+.+++..
T Consensus 141 ~~~~--~~~~adal~l~l~~~qe--~~------~---p~g~~~f~~~le~i~~i~~~~~--vPVivK~~g~g~s~~~a~~ 205 (352)
T PRK05437 141 QRAV--EMIEADALQIHLNPLQE--LV------Q---PEGDRDFRGWLDNIAEIVSALP--VPVIVKEVGFGISKETAKR 205 (352)
T ss_pred HHHH--HhcCCCcEEEeCccchh--hc------C---CCCcccHHHHHHHHHHHHHhhC--CCEEEEeCCCCCcHHHHHH
Confidence 4555 55567887765321110 00 0 1122222334678888988886 99986 666678999999
Q ss_pred HHHhccCeeeehh
Q psy5880 277 KIKAGASLVQIYT 289 (328)
Q Consensus 277 ~l~~GAd~V~vg~ 289 (328)
+.++|+|+|.|+.
T Consensus 206 l~~~Gvd~I~Vsg 218 (352)
T PRK05437 206 LADAGVKAIDVAG 218 (352)
T ss_pred HHHcCCCEEEECC
Confidence 9999999999853
No 319
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=96.05 E-value=0.07 Score=50.01 Aligned_cols=86 Identities=15% Similarity=0.281 Sum_probs=61.2
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 26 iD~~~l~~lv~~l--i~~Gv~Gi~v~GstGE~~------------~Lt----~eEr~~v~~~~~~~~~grvpvi~Gv~~~ 87 (309)
T cd00952 26 VDLDETARLVERL--IAAGVDGILTMGTFGECA------------TLT----WEEKQAFVATVVETVAGRVPVFVGATTL 87 (309)
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECcccccch------------hCC----HHHHHHHHHHHHHHhCCCCCEEEEeccC
Confidence 5556688899999 899999998887764421 011 1123456666777777789999776666
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhh
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVY 293 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~ 293 (328)
+.+++.++. +.|||+|++-...++
T Consensus 88 ~t~~ai~~a~~A~~~Gad~vlv~~P~y~ 115 (309)
T cd00952 88 NTRDTIARTRALLDLGADGTMLGRPMWL 115 (309)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCcCC
Confidence 667776654 379999999998754
No 320
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.093 Score=49.51 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=81.7
Q ss_pred cceEEeccCCCCC------cCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHH
Q psy5880 56 AHYFVVNVSSPNT------ANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGI 129 (328)
Q Consensus 56 ~~~v~~n~sspN~------~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a 129 (328)
+|.|++|.-||-. .|-.=+.+++-+.+++++++++.. ..|+.||+-.+..-. +....++++.+
T Consensus 93 ~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~------~iPVTVKiRlG~d~~-----~~~~~~ia~~~ 161 (323)
T COG0042 93 ADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG------DIPVTVKIRLGWDDD-----DILALEIARIL 161 (323)
T ss_pred CCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC------CCCeEEEEecccCcc-----cccHHHHHHHH
Confidence 6899999999943 243445578889999999998852 369999987664210 11356777888
Q ss_pred HHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCC-CCEEEEeCCCCChhhHHHHHHHhccccCC
Q psy5880 130 LKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPL-PPILVKIAPDLSLDEKKDIADVVLDSKCK 208 (328)
Q Consensus 130 ~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~-~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G 208 (328)
+.++ ++.+.+|.-.....+ .+..-.+.+..+++. .+ +||+. ..++. +..+.-+.+ +..|
T Consensus 162 ~~~g--~~~ltVHgRtr~~~y-----~~~ad~~~I~~vk~~-------~~~ipvi~--NGdI~--s~~~a~~~l--~~tg 221 (323)
T COG0042 162 EDAG--ADALTVHGRTRAQGY-----LGPADWDYIKELKEA-------VPSIPVIA--NGDIK--SLEDAKEML--EYTG 221 (323)
T ss_pred HhcC--CCEEEEecccHHhcC-----CCccCHHHHHHHHHh-------CCCCeEEe--CCCcC--CHHHHHHHH--HhhC
Confidence 8777 999998754211101 111234556666665 33 77764 33322 244555556 6788
Q ss_pred ccEEEEe
Q psy5880 209 VDGLIVS 215 (328)
Q Consensus 209 ~d~i~~~ 215 (328)
+|++.+.
T Consensus 222 ~DgVMig 228 (323)
T COG0042 222 ADGVMIG 228 (323)
T ss_pred CCEEEEc
Confidence 9999664
No 321
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=96.04 E-value=0.091 Score=49.34 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=54.0
Q ss_pred CCCCChhhHHHHHHHhccccC--CccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEE
Q psy5880 187 APDLSLDEKKDIADVVLDSKC--KVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIG 264 (328)
Q Consensus 187 ~~~~~~~~~~~~a~~l~~~~~--G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia 264 (328)
+.+...++... ++.| .++ |+|+|++-.. -|+| ...++.++.+|+.++ -+.+.
T Consensus 101 svG~~~~d~er-~~~L--~~a~~~~d~iviD~A----------------hGhs-----~~~i~~ik~ir~~~p--~~~vi 154 (343)
T TIGR01305 101 SSGSSDNDLEK-MTSI--LEAVPQLKFICLDVA----------------NGYS-----EHFVEFVKLVREAFP--EHTIM 154 (343)
T ss_pred EeccCHHHHHH-HHHH--HhcCCCCCEEEEECC----------------CCcH-----HHHHHHHHHHHhhCC--CCeEE
Confidence 44445555544 4556 565 5999876431 1121 235788999999887 46777
Q ss_pred ecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 265 VGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 265 ~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
.|.|-|++++.+++.+|||+|-||
T Consensus 155 aGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 155 AGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred EecccCHHHHHHHHHcCCCEEEEc
Confidence 788999999999999999999766
No 322
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.03 E-value=0.026 Score=55.95 Aligned_cols=70 Identities=21% Similarity=0.331 Sum_probs=55.0
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..+.++.| .++|+|.|++-.+. + .+ ...++.++.+++..+ ++|||+ |.+.|.+.
T Consensus 225 ~~~~ra~~L--v~aGVd~i~~D~a~-g---------------~~-----~~~~~~i~~i~~~~~-~~~vi~-g~~~t~~~ 279 (475)
T TIGR01303 225 DVGGKAKAL--LDAGVDVLVIDTAH-G---------------HQ-----VKMISAIKAVRALDL-GVPIVA-GNVVSAEG 279 (475)
T ss_pred cHHHHHHHH--HHhCCCEEEEeCCC-C---------------Cc-----HHHHHHHHHHHHHCC-CCeEEE-eccCCHHH
Confidence 466788888 89999998765432 1 11 235688999998874 599999 77999999
Q ss_pred HHHHHHhccCeeeeh
Q psy5880 274 AFEKIKAGASLVQIY 288 (328)
Q Consensus 274 a~~~l~~GAd~V~vg 288 (328)
+.+++.+|||+|-||
T Consensus 280 ~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 280 VRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHhCCCEEEEC
Confidence 999999999998754
No 323
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=96.02 E-value=0.082 Score=49.09 Aligned_cols=87 Identities=21% Similarity=0.301 Sum_probs=62.7
Q ss_pred CChhhHHHHHHHhcccc-CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCC
Q psy5880 190 LSLDEKKDIADVVLDSK-CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGV 268 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~-~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI 268 (328)
++.+.+.++++.+ .+ .|+++|.+.+++.... -++- ..-.+.++.+.+.+++++|||+.=|-
T Consensus 21 iD~~~~~~li~~l--~~~~Gv~gi~v~GstGE~~------------~Ls~----eEr~~~~~~~~~~~~~~~~viagvg~ 82 (293)
T PRK04147 21 IDEQGLRRLVRFN--IEKQGIDGLYVGGSTGEAF------------LLST----EEKKQVLEIVAEEAKGKVKLIAQVGS 82 (293)
T ss_pred cCHHHHHHHHHHH--HhcCCCCEEEECCCccccc------------cCCH----HHHHHHHHHHHHHhCCCCCEEecCCC
Confidence 5566788999999 88 9999998887764321 0111 12345666677777778999987776
Q ss_pred CCHHHHHHH----HHhccCeeeehhHHhhc
Q psy5880 269 FSGKDAFEK----IKAGASLVQIYTSFVYH 294 (328)
Q Consensus 269 ~s~~da~~~----l~~GAd~V~vg~a~l~~ 294 (328)
.+.+++.+. -++|||+|++....++.
T Consensus 83 ~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~ 112 (293)
T PRK04147 83 VNTAEAQELAKYATELGYDAISAVTPFYYP 112 (293)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCcCCC
Confidence 777777654 35899999999988644
No 324
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.01 E-value=0.081 Score=48.72 Aligned_cols=95 Identities=15% Similarity=0.196 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcC
Q psy5880 162 HLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPL 241 (328)
Q Consensus 162 ~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~ 241 (328)
.+.++|++++... ...+|.|-... +.++.+. .++|+|.|-+-|....
T Consensus 168 ~i~~av~~~r~~~---~~~kIeVEv~~------leea~~a---~~agaDiI~LDn~~~e--------------------- 214 (278)
T PRK08385 168 PLEEAIRRAKEFS---VYKVVEVEVES------LEDALKA---AKAGADIIMLDNMTPE--------------------- 214 (278)
T ss_pred HHHHHHHHHHHhC---CCCcEEEEeCC------HHHHHHH---HHcCcCEEEECCCCHH---------------------
Confidence 4555555554322 34556665432 4455444 4899999877764321
Q ss_pred chHHHHHHHHHHHHc-CCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 242 RNKSTELISEMYKLT-KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 242 ~~~~l~~v~~i~~~~-~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
.--+.+..+++.- ++++.+.++||| +.+.+.++.++|+|.+.+|+...
T Consensus 215 --~l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 215 --EIREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred --HHHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 1113333344432 235889999999 99999999999999999998664
No 325
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=95.99 E-value=0.56 Score=43.55 Aligned_cols=178 Identities=19% Similarity=0.198 Sum_probs=95.1
Q ss_pred CcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEE-ccCCC
Q psy5880 68 TANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVV-NVSSP 146 (328)
Q Consensus 68 ~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~iei-N~scP 146 (328)
+.|+++.+ .-.+.++++.+++..... ..|+.+- ..-|.- ....+...++...+++ +.+|.| .-..|
T Consensus 52 ~lG~PD~g-~l~~~e~~~~~~~I~~~~----~iPviaD----~d~GyG--~~~~v~r~V~~~~~aG--aagi~IEDq~~p 118 (292)
T PRK11320 52 SLGLPDLG-ITTLDDVLIDVRRITDAC----DLPLLVD----IDTGFG--GAFNIARTVKSMIKAG--AAAVHIEDQVGA 118 (292)
T ss_pred hcCCCCCC-CCCHHHHHHHHHHHHhcc----CCCEEEE----CCCCCC--CHHHHHHHHHHHHHcC--CeEEEEecCCCc
Confidence 45777644 344566666666554322 3565543 322211 2344555566666655 766655 21112
Q ss_pred CCcch---hhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC--ChhhHHHHHHHhccccCCccEEEEecCCccc
Q psy5880 147 NTANL---RKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL--SLDEKKDIADVVLDSKCKVDGLIVSNTTVDR 221 (328)
Q Consensus 147 n~~g~---~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~--~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~ 221 (328)
...|. ...-..+...+-+++++++++ ..++-|+.+.-... ..++..+=++.. .++|+|+|-+.+..
T Consensus 119 K~cg~~~~~~lv~~ee~~~kI~Aa~~a~~----~~d~~IiARTDa~~~~g~deAI~Ra~aY--~eAGAD~ifi~~~~--- 189 (292)
T PRK11320 119 KRCGHRPNKEIVSQEEMVDRIKAAVDART----DPDFVIMARTDALAVEGLDAAIERAQAY--VEAGADMIFPEAMT--- 189 (292)
T ss_pred cccCCCCCCcccCHHHHHHHHHHHHHhcc----CCCeEEEEecCcccccCHHHHHHHHHHH--HHcCCCEEEecCCC---
Confidence 22121 111123334444445544431 13455556654422 234555556777 89999999765411
Q ss_pred hhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEE---EecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 222 YEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPII---GVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 222 ~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvi---a~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
.++.++++.+.++ .|+. ..+|-.-.-.+.++-++|...|..+..++
T Consensus 190 -----------------------~~~~i~~~~~~~~--~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~ 238 (292)
T PRK11320 190 -----------------------ELEMYRRFADAVK--VPILANITEFGATPLFTTEELASAGVAMVLYPLSAF 238 (292)
T ss_pred -----------------------CHHHHHHHHHhcC--CCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHH
Confidence 2467788888776 7873 33443222346666678999999998775
No 326
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.97 E-value=0.091 Score=48.57 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCC
Q psy5880 158 DQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLS 237 (328)
Q Consensus 158 ~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~s 237 (328)
.+...+.++|+++++..+ ...+|.|-. + .+.++.+ + .++|+|.|-+-|-.+
T Consensus 178 ~~~g~i~~av~~~r~~~~--~~~kIeVEv----~--tleea~~-a--~~agaDiImLDnmsp------------------ 228 (290)
T PRK06559 178 AAVGSVQKAIAQARAYAP--FVKMVEVEV----E--SLAAAEE-A--AAAGADIIMLDNMSL------------------ 228 (290)
T ss_pred HhhccHHHHHHHHHHhCC--CCCeEEEEC----C--CHHHHHH-H--HHcCCCEEEECCCCH------------------
Confidence 344456666666654321 123444443 2 2445444 4 589999998877432
Q ss_pred CCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 238 GEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 238 g~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
+.++++.+.+++++.+.++||| |.+.+.++..+|+|.+.+|....
T Consensus 229 ---------e~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 229 ---------EQIEQAITLIAGRSRIECSGNI-DMTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred ---------HHHHHHHHHhcCceEEEEECCC-CHHHHHHHHhcCCCEEEeCcccc
Confidence 2334443444446889999998 79999999999999999988653
No 327
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.97 E-value=0.08 Score=49.24 Aligned_cols=87 Identities=13% Similarity=0.244 Sum_probs=61.5
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+++|.+.+++.... .++ ...-.+.++.+.+.+++++||++.-|-.
T Consensus 18 iD~~~l~~lv~~~--~~~Gv~gi~v~GstGE~~------------~Ls----~~Er~~l~~~~~~~~~g~~pvi~gv~~~ 79 (294)
T TIGR02313 18 IDEEALRELIEFQ--IEGGSHAISVGGTSGEPG------------SLT----LEERKQAIENAIDQIAGRIPFAPGTGAL 79 (294)
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccCcccc------------cCC----HHHHHHHHHHHHHHhCCCCcEEEECCcc
Confidence 5556788899999 899999998887764421 011 1123456666677777789999766667
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYH 294 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~ 294 (328)
+.+++.+.. +.|||+|++....++.
T Consensus 80 ~t~~ai~~a~~A~~~Gad~v~v~pP~y~~ 108 (294)
T TIGR02313 80 NHDETLELTKFAEEAGADAAMVIVPYYNK 108 (294)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCccCCC
Confidence 777765544 4799999999988643
No 328
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.96 E-value=0.082 Score=49.04 Aligned_cols=85 Identities=15% Similarity=0.278 Sum_probs=59.9
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++.... -++ ...-.+.++.+.+.+++++|||+.-|-
T Consensus 18 iD~~~l~~l~~~l--~~~Gv~gi~v~GstGE~~------------~Ls----~eEr~~l~~~~~~~~~~~~pvi~gv~~- 78 (289)
T cd00951 18 FDEDAYRAHVEWL--LSYGAAALFAAGGTGEFF------------SLT----PDEYAQVVRAAVEETAGRVPVLAGAGY- 78 (289)
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECcCCcCcc------------cCC----HHHHHHHHHHHHHHhCCCCCEEEecCC-
Confidence 4556688899999 899999998887764321 011 112245666667777778999987675
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhh
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVY 293 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~ 293 (328)
+.+++.+.. ++|||++++....+.
T Consensus 79 ~t~~~i~~a~~a~~~Gad~v~~~pP~y~ 106 (289)
T cd00951 79 GTATAIAYAQAAEKAGADGILLLPPYLT 106 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 667776644 489999999888754
No 329
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=95.95 E-value=0.074 Score=46.64 Aligned_cols=76 Identities=21% Similarity=0.255 Sum_probs=60.2
Q ss_pred CCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCC
Q psy5880 189 DLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGV 268 (328)
Q Consensus 189 ~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI 268 (328)
+++.+.+..+++++ ...|+++|++... -+.++.+++..+ +||..++
T Consensus 23 NFd~~~V~~i~~AA--~~ggAt~vDIAad----------------------------p~LV~~~~~~s~--lPICVSa-- 68 (242)
T PF04481_consen 23 NFDAESVAAIVKAA--EIGGATFVDIAAD----------------------------PELVKLAKSLSN--LPICVSA-- 68 (242)
T ss_pred ccCHHHHHHHHHHH--HccCCceEEecCC----------------------------HHHHHHHHHhCC--CCeEeec--
Confidence 35667788999999 8999999987642 156777777766 9999875
Q ss_pred CCHHHHHHHHHhccCeeeehh--HHhhcCchH
Q psy5880 269 FSGKDAFEKIKAGASLVQIYT--SFVYHGPPL 298 (328)
Q Consensus 269 ~s~~da~~~l~~GAd~V~vg~--a~l~~gp~~ 298 (328)
-+|+....+.++|||+|.+|- +|+.+|-.|
T Consensus 69 Vep~~f~~aV~AGAdliEIGNfDsFY~qGr~f 100 (242)
T PF04481_consen 69 VEPELFVAAVKAGADLIEIGNFDSFYAQGRRF 100 (242)
T ss_pred CCHHHHHHHHHhCCCEEEecchHHHHhcCCee
Confidence 489999999999999999994 776665544
No 330
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.91 E-value=0.41 Score=45.29 Aligned_cols=173 Identities=14% Similarity=0.091 Sum_probs=84.4
Q ss_pred CCcchhcccCCccc-ccccchhHHHHHHHHHHHHhcccccEEEEc--cCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhc
Q psy5880 99 LPPILVKIAPDLSL-DEKKDIADVVLDSVKGILKFGDVAHYFVVN--VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA 175 (328)
Q Consensus 99 ~~Pv~vki~~~l~~-~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN--~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~ 175 (328)
..|+++|+...-++ ..+.. ...+-.-++.|-+++ +|++-++ +++++ ..+.+.++-+ +.+.+..
T Consensus 125 ~iplIlkln~~t~l~~~~~~-~~~l~~sVedAlrLG--AdAV~~tvy~Gs~~--------E~~ml~~l~~-i~~ea~~-- 190 (348)
T PRK09250 125 KIPFILKLNHNELLSYPNTY-DQALTASVEDALRLG--AVAVGATIYFGSEE--------SRRQIEEISE-AFEEAHE-- 190 (348)
T ss_pred CCCEEEEeCCCCCCCCCCCC-cccceecHHHHHHCC--CCEEEEEEecCCHH--------HHHHHHHHHH-HHHHHHH--
Confidence 46777777643333 21111 222222234455565 7776554 44211 1122333333 3333322
Q ss_pred CCCCCCEEEEeCC---CCC--------hhhHHHHHHHhccccCCccEEEEecCCc--cchhh--hccccccccCCCCCCc
Q psy5880 176 VKPLPPILVKIAP---DLS--------LDEKKDIADVVLDSKCKVDGLIVSNTTV--DRYEY--LDARYKEETGGLSGEP 240 (328)
Q Consensus 176 ~~~~~Pv~vKl~~---~~~--------~~~~~~~a~~l~~~~~G~d~i~~~n~~~--~~~~~--~~~~~~~~~gg~sg~~ 240 (328)
..+|+++=+-| .++ .+-+...++.. .+.|+|.|-+--+.. ++... .... ... +++..
T Consensus 191 --~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRia--aELGADIVKv~yp~~~~~f~~v~~~~~~-~~~---~~~~~ 262 (348)
T PRK09250 191 --LGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLA--ATIGADIIKQKLPTNNGGYKAINFGKTD-DRV---YSKLT 262 (348)
T ss_pred --hCCCEEEEecccCcccCCcccccccHHHHHHHHHHH--HHHcCCEEEecCCCChhhHHHhhccccc-ccc---ccccc
Confidence 68999873322 111 12345556666 899999985532211 10000 0000 000 11111
Q ss_pred CchHHHHHHHHHHHHc-CCCccEEEecCCCC-HHH----HHHH---HHhccCeeeehhHHhhc
Q psy5880 241 LRNKSTELISEMYKLT-KGKLPIIGVGGVFS-GKD----AFEK---IKAGASLVQIYTSFVYH 294 (328)
Q Consensus 241 ~~~~~l~~v~~i~~~~-~~~ipvia~GGI~s-~~d----a~~~---l~~GAd~V~vg~a~l~~ 294 (328)
. ....+.++.+.+.+ .+.+||+..||=+. .++ +.++ +++||..|.+||=++.+
T Consensus 263 ~-~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~ 324 (348)
T PRK09250 263 S-DHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQR 324 (348)
T ss_pred c-cchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcC
Confidence 1 11124445444444 23499999999884 333 4556 77899999999988643
No 331
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.91 E-value=0.78 Score=41.43 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcc-cccEEEEc-cC----CCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC----CCh
Q psy5880 123 LDSVKGILKFGD-VAHYFVVN-VS----SPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD----LSL 192 (328)
Q Consensus 123 ~~~~~~a~~~~~-~~d~ieiN-~s----cPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~----~~~ 192 (328)
.++.+.++++.+ +++++.|- -. |-++.+ ...-..+...+.+++++++++.. .+++|+++.-.. ...
T Consensus 84 ~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~-~~~~~~ee~~~ki~aa~~a~~~~---~~~~IiARTDa~~~~~~~~ 159 (243)
T cd00377 84 LNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGG-KVLVPIEEFVAKIKAARDARDDL---PDFVIIARTDALLAGEEGL 159 (243)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCCccccCCCC-CeecCHHHHHHHHHHHHHHHhcc---CCeEEEEEcCchhccCCCH
Confidence 333344433332 48888762 11 222211 12223455666666666664311 368899994322 234
Q ss_pred hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCC-H
Q psy5880 193 DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFS-G 271 (328)
Q Consensus 193 ~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s-~ 271 (328)
++..+-++.. .++|+|++.+.+.. ..+.++++.+..+ .||+..-.=.. .
T Consensus 160 ~eai~Ra~ay--~~AGAD~v~v~~~~--------------------------~~~~~~~~~~~~~--~Pl~~~~~~~~~~ 209 (243)
T cd00377 160 DEAIERAKAY--AEAGADGIFVEGLK--------------------------DPEEIRAFAEAPD--VPLNVNMTPGGNL 209 (243)
T ss_pred HHHHHHHHHH--HHcCCCEEEeCCCC--------------------------CHHHHHHHHhcCC--CCEEEEecCCCCC
Confidence 5677888888 99999999766421 2366778877776 88876521111 1
Q ss_pred HHHHHHHHhccCeeeehhHHh
Q psy5880 272 KDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 272 ~da~~~l~~GAd~V~vg~a~l 292 (328)
-...++-+.|...|.++..++
T Consensus 210 ~~~~~l~~lG~~~v~~~~~~~ 230 (243)
T cd00377 210 LTVAELAELGVRRVSYGLALL 230 (243)
T ss_pred CCHHHHHHCCCeEEEEChHHH
Confidence 345566678999999887765
No 332
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.85 E-value=0.049 Score=48.01 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=62.0
Q ss_pred CEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCc
Q psy5880 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKL 260 (328)
Q Consensus 181 Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~i 260 (328)
|++.=++.. +.++..++++.+ .+.|+..+-++.++. .+.+.++.+++..+. -
T Consensus 11 ~~~~v~r~~-~~~~~~~~~~a~--~~gGi~~iEvt~~~~------------------------~~~~~i~~l~~~~~~-~ 62 (206)
T PRK09140 11 PLIAILRGI-TPDEALAHVGAL--IEAGFRAIEIPLNSP------------------------DPFDSIAALVKALGD-R 62 (206)
T ss_pred CEEEEEeCC-CHHHHHHHHHHH--HHCCCCEEEEeCCCc------------------------cHHHHHHHHHHHcCC-C
Confidence 444444443 556789999999 999999987775432 134678888887752 2
Q ss_pred cEEEecCCCCHHHHHHHHHhccCeeeehh
Q psy5880 261 PIIGVGGVFSGKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 261 pvia~GGI~s~~da~~~l~~GAd~V~vg~ 289 (328)
-+||.|.|.+.+++..++++||+++..+.
T Consensus 63 ~~iGaGTV~~~~~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 63 ALIGAGTVLSPEQVDRLADAGGRLIVTPN 91 (206)
T ss_pred cEEeEEecCCHHHHHHHHHcCCCEEECCC
Confidence 48999999999999999999999998764
No 333
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.82 E-value=0.1 Score=48.59 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=64.4
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG 258 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~ 258 (328)
+.|+++.+-...+.+...++++.+ .+.|+++|.++-.... .+.. ..++.++++++.++
T Consensus 115 ~~~~~~ql~~~~~~~~~~~~i~~~--~~~g~~~i~l~~~~p~------------~~~~-------~~~~~i~~l~~~~~- 172 (299)
T cd02809 115 PGPRWFQLYVPRDREITEDLLRRA--EAAGYKALVLTVDTPV------------LGRR-------LTWDDLAWLRSQWK- 172 (299)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHH--HHcCCCEEEEecCCCC------------CCCC-------CCHHHHHHHHHhcC-
Confidence 369999987654556677888888 8899999987643221 0100 23477888998887
Q ss_pred CccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 259 KLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 259 ~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
+||+.- ++.+.+++..+.++|||+|.+.
T Consensus 173 -~pvivK-~v~s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 173 -GPLILK-GILTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred -CCEEEe-ecCCHHHHHHHHHCCCCEEEEc
Confidence 898876 5899999999999999999874
No 334
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.82 E-value=1.2 Score=41.28 Aligned_cols=182 Identities=13% Similarity=0.136 Sum_probs=93.1
Q ss_pred CcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEc-cCCC
Q psy5880 68 TANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVN-VSSP 146 (328)
Q Consensus 68 ~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN-~scP 146 (328)
+.|+++.+ .-.+.++++.+.+..... ..|+.+ |+.-|.- ....+...++...+++ +.+|.|- -..|
T Consensus 49 slG~pD~g-~l~~~e~~~~~~~I~~~~----~lPv~a----D~d~GyG--~~~~v~~tV~~~~~aG--vagi~IEDq~~p 115 (290)
T TIGR02321 49 SYAVPDAN-ILSMSTHLEMMRAIASTV----SIPLIA----DIDTGFG--NAVNVHYVVPQYEAAG--ASAIVMEDKTFP 115 (290)
T ss_pred HCCCCCcc-cCCHHHHHHHHHHHHhcc----CCCEEE----ECCCCCC--CcHHHHHHHHHHHHcC--CeEEEEeCCCCC
Confidence 35766543 234566666665544321 346544 3322211 1113455555555555 7666652 1223
Q ss_pred CCcch-----hhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC---CChhhHHHHHHHhccccCCccEEEEecCC
Q psy5880 147 NTANL-----RKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD---LSLDEKKDIADVVLDSKCKVDGLIVSNTT 218 (328)
Q Consensus 147 n~~g~-----~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~---~~~~~~~~~a~~l~~~~~G~d~i~~~n~~ 218 (328)
...++ +..-..+...+-++++++++. ..++-|+.+.-.. ...++..+=++.. .++|+|+|-+.+..
T Consensus 116 k~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~----~~d~~I~ARTDa~~~~~g~deAI~Ra~aY--~eAGAD~ifv~~~~ 189 (290)
T TIGR02321 116 KDTSLRTDGRQELVRIEEFQGKIAAATAARA----DRDFVVIARVEALIAGLGQQEAVRRGQAY--EEAGADAILIHSRQ 189 (290)
T ss_pred cccccccCCCccccCHHHHHHHHHHHHHhCC----CCCEEEEEEeccccccCCHHHHHHHHHHH--HHcCCCEEEecCCC
Confidence 32221 112233444455555555421 1344555565443 2334555557777 89999999765421
Q ss_pred ccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhh
Q psy5880 219 VDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVY 293 (328)
Q Consensus 219 ~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~ 293 (328)
. +.+.++++.+.++..+|++.+.|-+-.-.+.++-++| ...|..+..++.
T Consensus 190 ~-------------------------~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~lg~~~~v~~g~~~~~ 240 (290)
T TIGR02321 190 K-------------------------TPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIR 240 (290)
T ss_pred C-------------------------CHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHhcCCcEEEEChHHHH
Confidence 1 1355777777776557887654322212334556677 788888877653
No 335
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.80 E-value=0.11 Score=45.56 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=58.2
Q ss_pred ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCC
Q psy5880 191 SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFS 270 (328)
Q Consensus 191 ~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s 270 (328)
+.++...+++.| .+.|++.|-++-++. ..++.|+.+++.++ =-+||.|=|-|
T Consensus 23 ~~e~a~~~a~Al--i~gGi~~IEITl~sp------------------------~a~e~I~~l~~~~p--~~lIGAGTVL~ 74 (211)
T COG0800 23 DVEEALPLAKAL--IEGGIPAIEITLRTP------------------------AALEAIRALAKEFP--EALIGAGTVLN 74 (211)
T ss_pred CHHHHHHHHHHH--HHcCCCeEEEecCCC------------------------CHHHHHHHHHHhCc--ccEEccccccC
Confidence 446788999999 999999998876543 24688999999887 56999999999
Q ss_pred HHHHHHHHHhccCeee
Q psy5880 271 GKDAFEKIKAGASLVQ 286 (328)
Q Consensus 271 ~~da~~~l~~GAd~V~ 286 (328)
++++.++..+||+++.
T Consensus 75 ~~q~~~a~~aGa~fiV 90 (211)
T COG0800 75 PEQARQAIAAGAQFIV 90 (211)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 9999999999999884
No 336
>KOG3111|consensus
Probab=95.80 E-value=0.33 Score=41.88 Aligned_cols=139 Identities=17% Similarity=0.249 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.+++.-...++ ++.+.+|.- .+. ...++++.||+. +.-+.+-|-|+.+.+++..++..
T Consensus 77 eq~V~~~a~ag--as~~tfH~E--~~q---------~~~~lv~~ir~~--------Gmk~G~alkPgT~Ve~~~~~~~~- 134 (224)
T KOG3111|consen 77 EQWVDQMAKAG--ASLFTFHYE--ATQ---------KPAELVEKIREK--------GMKVGLALKPGTPVEDLEPLAEH- 134 (224)
T ss_pred HHHHHHHHhcC--cceEEEEEe--ecc---------CHHHHHHHHHHc--------CCeeeEEeCCCCcHHHHHHhhcc-
Confidence 34444444445 788875543 221 156677777763 66777778888776555544433
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhcc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGA 282 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GA 282 (328)
+|.+-+-.-- -|+.|-..-+.-+..++.+|+..+ ++.|=.-||+ +++-+.++.++||
T Consensus 135 ------~D~vLvMtVe---------------PGFGGQkFme~mm~KV~~lR~kyp-~l~ievDGGv-~~~ti~~~a~AGA 191 (224)
T KOG3111|consen 135 ------VDMVLVMTVE---------------PGFGGQKFMEDMMPKVEWLREKYP-NLDIEVDGGV-GPSTIDKAAEAGA 191 (224)
T ss_pred ------ccEEEEEEec---------------CCCchhhhHHHHHHHHHHHHHhCC-CceEEecCCc-CcchHHHHHHcCC
Confidence 3544332111 123332223444667788887775 3555588998 6788999999999
Q ss_pred CeeeehhHHhhc-Cc-hHHHHHHHHH
Q psy5880 283 SLVQIYTSFVYH-GP-PLVTRIKSEL 306 (328)
Q Consensus 283 d~V~vg~a~l~~-gp-~~~~~i~~~l 306 (328)
+++..||+++.. +| ++++.++...
T Consensus 192 N~iVaGsavf~a~d~~~vi~~lr~~v 217 (224)
T KOG3111|consen 192 NMIVAGSAVFGAADPSDVISLLRNSV 217 (224)
T ss_pred CEEEecceeecCCCHHHHHHHHHHHH
Confidence 999999998732 33 3445444433
No 337
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=95.78 E-value=0.098 Score=44.59 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=51.1
Q ss_pred CEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCc
Q psy5880 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKL 260 (328)
Q Consensus 181 Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~i 260 (328)
++.|-... ..++.+ + .++|+|.|-+-|.... .--+.+..++. .+.++
T Consensus 82 ~I~VEv~~------~ee~~e-a--~~~g~d~I~lD~~~~~-----------------------~~~~~v~~l~~-~~~~v 128 (169)
T PF01729_consen 82 KIEVEVEN------LEEAEE-A--LEAGADIIMLDNMSPE-----------------------DLKEAVEELRE-LNPRV 128 (169)
T ss_dssp EEEEEESS------HHHHHH-H--HHTT-SEEEEES-CHH-----------------------HHHHHHHHHHH-HTTTS
T ss_pred eEEEEcCC------HHHHHH-H--HHhCCCEEEecCcCHH-----------------------HHHHHHHHHhh-cCCcE
Confidence 37776542 334433 4 5799999988774321 11233444433 34469
Q ss_pred cEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 261 PIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 261 pvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
.|.++||| |.+.+.++..+|+|.+.+|+...
T Consensus 129 ~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~ 159 (169)
T PF01729_consen 129 KIEASGGI-TLENIAEYAKTGVDVISVGSLTH 159 (169)
T ss_dssp EEEEESSS-STTTHHHHHHTT-SEEEECHHHH
T ss_pred EEEEECCC-CHHHHHHHHhcCCCEEEcChhhc
Confidence 99999998 78899999999999999998874
No 338
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.78 E-value=0.34 Score=45.49 Aligned_cols=160 Identities=12% Similarity=0.105 Sum_probs=85.2
Q ss_pred hhhHHHHHHHhHHHHHHHhhcC-ccceEEeccC---------CCCCcCccCCCc-------hHHHHHHHHHHHHHhhhhc
Q psy5880 33 SFARMRAWVLQFWLLGILKFGD-VAHYFVVNVS---------SPNTANLRKLQA-------KDQLKHLLKTVVETRNQLA 95 (328)
Q Consensus 33 ~~~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~s---------spN~~gl~~~~~-------~~~L~~ll~~v~~~~~~~~ 95 (328)
..+.+. .++++|.+.++.+.. -.|.|++|.. ||.+. -++++. ..-+.+++++|++. ++
T Consensus 132 t~~ei~-~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n-~R~d~yGgs~enr~r~~~eii~avr~~---~g 206 (327)
T cd02803 132 TKEEIE-QIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTN-KRTDEYGGSLENRARFLLEIVAAVREA---VG 206 (327)
T ss_pred CHHHHH-HHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCcccc-CCCcccCCCHHHHHHHHHHHHHHHHHH---cC
Confidence 345564 677889998886543 2578888875 67542 343321 12234444555443 22
Q ss_pred CCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhh---hhhhHHHHHHHHHHHHHHH
Q psy5880 96 LKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRK---LQAKDQLKHLLKTVVETRN 172 (328)
Q Consensus 96 ~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~---~~~~~~~~~i~~~v~~~~~ 172 (328)
...|+.+|+.+.-... ...+.++..++++.++.++ +|+|++.......+.... ...+....+.++.+++.
T Consensus 207 --~d~~i~vris~~~~~~-~g~~~~e~~~la~~l~~~G--~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~-- 279 (327)
T cd02803 207 --PDFPVGVRLSADDFVP-GGLTLEEAIEIAKALEEAG--VDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA-- 279 (327)
T ss_pred --CCceEEEEechhccCC-CCCCHHHHHHHHHHHHHcC--CCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH--
Confidence 2458888887642110 0012344556666666555 999997544322111000 00112344566667665
Q ss_pred hhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 173 QLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 173 ~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.++||++= .++.. ..++.+.+ .+.|+|.|.+.
T Consensus 280 -----~~iPVi~~--Ggi~t--~~~a~~~l--~~g~aD~V~ig 311 (327)
T cd02803 280 -----VKIPVIAV--GGIRD--PEVAEEIL--AEGKADLVALG 311 (327)
T ss_pred -----CCCCEEEe--CCCCC--HHHHHHHH--HCCCCCeeeec
Confidence 57898764 33331 33444555 45579988654
No 339
>PLN02417 dihydrodipicolinate synthase
Probab=95.77 E-value=0.11 Score=47.89 Aligned_cols=87 Identities=21% Similarity=0.275 Sum_probs=60.7
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+++|.+.+++...+ -++ ...-.+.++.+.+.+++++||++.=|-.
T Consensus 19 iD~~~~~~~i~~l--~~~Gv~Gi~~~GstGE~~------------~ls----~~Er~~~~~~~~~~~~~~~pvi~gv~~~ 80 (280)
T PLN02417 19 FDLEAYDSLVNMQ--IENGAEGLIVGGTTGEGQ------------LMS----WDEHIMLIGHTVNCFGGKIKVIGNTGSN 80 (280)
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccCcchh------------hCC----HHHHHHHHHHHHHHhCCCCcEEEECCCc
Confidence 5566788899999 899999999887764421 011 1122355566666677789998766666
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYH 294 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~ 294 (328)
+.+++.+.. ++|||+|++....++.
T Consensus 81 ~t~~~i~~a~~a~~~Gadav~~~~P~y~~ 109 (280)
T PLN02417 81 STREAIHATEQGFAVGMHAALHINPYYGK 109 (280)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCccCC
Confidence 677766643 5899999999987543
No 340
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.75 E-value=0.13 Score=48.38 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=53.8
Q ss_pred CCCCChhhHHHHHHHhcccc--CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEE
Q psy5880 187 APDLSLDEKKDIADVVLDSK--CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIG 264 (328)
Q Consensus 187 ~~~~~~~~~~~~a~~l~~~~--~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia 264 (328)
+.+...++...+. .| .+ +|+|.|++-.. .|+| ...+++++.+|+.++ +++ |.
T Consensus 102 avG~~~~d~er~~-~L--~~~~~g~D~iviD~A----------------hGhs-----~~~i~~ik~ik~~~P-~~~-vI 155 (346)
T PRK05096 102 STGTSDADFEKTK-QI--LALSPALNFICIDVA----------------NGYS-----EHFVQFVAKAREAWP-DKT-IC 155 (346)
T ss_pred EecCCHHHHHHHH-HH--HhcCCCCCEEEEECC----------------CCcH-----HHHHHHHHHHHHhCC-CCc-EE
Confidence 5555555655554 45 34 69999976431 1121 235789999999886 466 55
Q ss_pred ecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 265 VGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 265 ~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
.|.|-|++-+.+++.+|||+|-||
T Consensus 156 aGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 156 AGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred EecccCHHHHHHHHHcCCCEEEEc
Confidence 689999999999999999998654
No 341
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.73 E-value=0.15 Score=46.91 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCC
Q psy5880 159 QLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG 238 (328)
Q Consensus 159 ~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg 238 (328)
+...+.++|+++++..+ ...+|.|=.. + +.++.+ + .++|+|.|-+-|...
T Consensus 176 ~~G~i~~ai~~~r~~~~--~~~kIeVEv~---t---leea~e-a--~~~gaDiI~LDn~s~------------------- 225 (281)
T PRK06106 176 IAGGVREAIRRARAGVG--HLVKIEVEVD---T---LDQLEE-A--LELGVDAVLLDNMTP------------------- 225 (281)
T ss_pred HhCcHHHHHHHHHHhCC--CCCcEEEEeC---C---HHHHHH-H--HHcCCCEEEeCCCCH-------------------
Confidence 33445666666654321 1244554433 2 344444 4 589999998877432
Q ss_pred CcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 239 EPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 239 ~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
+.++++.+.++...++-++||| |.+.+.++..+|+|.+.+|....
T Consensus 226 --------e~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 226 --------DTLREAVAIVAGRAITEASGRI-TPETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred --------HHHHHHHHHhCCCceEEEECCC-CHHHHHHHHhcCCCEEEeChhhc
Confidence 3344444444456889999998 78999999999999999998653
No 342
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.69 E-value=1.2 Score=41.47 Aligned_cols=178 Identities=14% Similarity=0.097 Sum_probs=94.4
Q ss_pred CcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEc--cC-
Q psy5880 68 TANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVN--VS- 144 (328)
Q Consensus 68 ~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN--~s- 144 (328)
+.|+++.+ .-.+.+++..+.+.... ...|+.+- +.-|.- ....+...++...+++ +.+|.|- ..
T Consensus 51 ~lG~pD~g-~l~~~e~~~~~~~I~~~----~~lPv~aD----~dtGyG--~~~~v~r~V~~~~~aG--aagi~IEDq~~p 117 (294)
T TIGR02319 51 MLGLPDLG-FTSVSEQAINAKNIVLA----VDVPVIMD----ADAGYG--NAMSVWRATREFERVG--IVGYHLEDQVNP 117 (294)
T ss_pred HcCCCCcC-CCCHHHHHHHHHHHHhc----cCCCEEEE----CCCCCC--CcHHHHHHHHHHHHcC--CeEEEEECCCCc
Confidence 35666544 33355666665544432 23565543 222210 1122455556666655 7776652 21
Q ss_pred --CCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC--CChhhHHHHHHHhccccCCccEEEEecCCcc
Q psy5880 145 --SPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD--LSLDEKKDIADVVLDSKCKVDGLIVSNTTVD 220 (328)
Q Consensus 145 --cPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~--~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~ 220 (328)
|.+..+.. .-..+...+-+++++++++ ..++-|+.|.-.. ...++..+=++.. .++|+|+|-+.+..
T Consensus 118 K~cg~~~~k~-lv~~ee~~~kI~Aa~~A~~----~~d~~I~ARTDa~~~~g~deaI~Ra~aY--~eAGAD~ifi~~~~-- 188 (294)
T TIGR02319 118 KRCGHLEGKR-LISTEEMTGKIEAAVEARE----DEDFTIIARTDARESFGLDEAIRRSREY--VAAGADCIFLEAML-- 188 (294)
T ss_pred cccCCCCCcc-ccCHHHHHHHHHHHHHhcc----CCCeEEEEEecccccCCHHHHHHHHHHH--HHhCCCEEEecCCC--
Confidence 22222211 1123334444444444432 1345556665432 2334555556666 78999999765411
Q ss_pred chhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccE---EEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 221 RYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPI---IGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 221 ~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipv---ia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
..+.++++.+.++ .|+ +..||-.-.-.+.++-++|.+.|..+..++.
T Consensus 189 ------------------------~~~ei~~~~~~~~--~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~ 238 (294)
T TIGR02319 189 ------------------------DVEEMKRVRDEID--APLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWM 238 (294)
T ss_pred ------------------------CHHHHHHHHHhcC--CCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHH
Confidence 1356788888876 565 4455543334577777889999999987753
No 343
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.67 E-value=0.13 Score=47.99 Aligned_cols=85 Identities=15% Similarity=0.293 Sum_probs=59.3
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++.... .++. ..-.+.++.+.+.+.+++|||+.-|-
T Consensus 25 iD~~~l~~li~~l--~~~Gv~Gi~~~GstGE~~------------~Lt~----eEr~~~~~~~~~~~~~~~pvi~gv~~- 85 (303)
T PRK03620 25 FDEAAYREHLEWL--APYGAAALFAAGGTGEFF------------SLTP----DEYSQVVRAAVETTAGRVPVIAGAGG- 85 (303)
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECcCCcCcc------------cCCH----HHHHHHHHHHHHHhCCCCcEEEecCC-
Confidence 5556788899999 899999998887764321 0111 12245666677777778999966563
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhh
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVY 293 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~ 293 (328)
+.+++.+.. ++|||+|++....++
T Consensus 86 ~t~~~i~~~~~a~~~Gadav~~~pP~y~ 113 (303)
T PRK03620 86 GTAQAIEYAQAAERAGADGILLLPPYLT 113 (303)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 666666544 479999999888754
No 344
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=95.66 E-value=0.66 Score=41.91 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=89.0
Q ss_pred CcchhcccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCC
Q psy5880 100 PPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKP 178 (328)
Q Consensus 100 ~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~ 178 (328)
.|+.+=|-|- -+.-..++++++.+.+.++.+.+ ++|+|.+-+.-|+. . -+.+.+.+++++. .
T Consensus 52 ipv~vMIRPR--~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg--~---vD~~~~~~Li~~a----------~ 114 (248)
T PRK11572 52 IPVHPIIRPR--GGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDG--H---VDMPRMRKIMAAA----------G 114 (248)
T ss_pred CCeEEEEecC--CCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC--C---cCHHHHHHHHHHh----------c
Confidence 5665444331 12223456778888888877776 79999965553332 1 1334455555442 3
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG 258 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~ 258 (328)
+.|+.+--.-+... +..+..+.+ .+.|++.|-.++.... -..+++.++++.+...+
T Consensus 115 ~~~vTFHRAfD~~~-d~~~al~~l--~~lG~~rILTSGg~~~---------------------a~~g~~~L~~lv~~a~~ 170 (248)
T PRK11572 115 PLAVTFHRAFDMCA-NPLNALKQL--ADLGVARILTSGQQQD---------------------AEQGLSLIMELIAASDG 170 (248)
T ss_pred CCceEEechhhccC-CHHHHHHHH--HHcCCCEEECCCCCCC---------------------HHHHHHHHHHHHHhcCC
Confidence 57887766555443 345566778 8999999854432211 12346677777665554
Q ss_pred CccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 259 KLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 259 ~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
.+ |++.||| +++.+.+.+.+|+..|-..
T Consensus 171 ~~-Im~GgGV-~~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 171 PI-IMAGAGV-RLSNLHKFLDAGVREVHSS 198 (248)
T ss_pred CE-EEeCCCC-CHHHHHHHHHcCCCEEeeC
Confidence 34 8888887 5777777778998877643
No 345
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=95.64 E-value=1 Score=41.64 Aligned_cols=177 Identities=18% Similarity=0.135 Sum_probs=94.2
Q ss_pred CcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEc--cC-
Q psy5880 68 TANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVN--VS- 144 (328)
Q Consensus 68 ~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN--~s- 144 (328)
+.|+++.+ .-.+.++++.+....... ..|+.+ |+.-|.- ....+...++...+++ +.+|.|- .+
T Consensus 47 ~lG~pD~g-~lt~~e~~~~~~~I~~~~----~iPvia----D~d~GyG--~~~~v~~tv~~~~~aG--~agi~IEDq~~p 113 (285)
T TIGR02317 47 SLGLPDLG-ITTLDEVAEDARRITRVT----DLPLLV----DADTGFG--EAFNVARTVREMEDAG--AAAVHIEDQVLP 113 (285)
T ss_pred hCCCCCCC-CCCHHHHHHHHHHHHhcc----CCCEEE----ECCCCCC--CHHHHHHHHHHHHHcC--CeEEEEecCCCc
Confidence 45777654 234566666665544321 346544 3322211 1234445555555555 7776652 21
Q ss_pred --CCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC--CChhhHHHHHHHhccccCCccEEEEecCCcc
Q psy5880 145 --SPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD--LSLDEKKDIADVVLDSKCKVDGLIVSNTTVD 220 (328)
Q Consensus 145 --cPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~--~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~ 220 (328)
|-+..+.. .-..+...+-++++++++. ..++-|+.+.-.. ...++..+=++.. .++|+|.|-+.+..
T Consensus 114 K~cgh~~g~~-lv~~ee~~~kI~Aa~~a~~----~~d~~IiARTDa~~~~g~deAI~Ra~ay--~~AGAD~vfi~g~~-- 184 (285)
T TIGR02317 114 KRCGHLPGKE-LVSREEMVDKIAAAVDAKR----DEDFVIIARTDARAVEGLDAAIERAKAY--VEAGADMIFPEALT-- 184 (285)
T ss_pred cccCCCCCcc-ccCHHHHHHHHHHHHHhcc----CCCEEEEEEcCcccccCHHHHHHHHHHH--HHcCCCEEEeCCCC--
Confidence 22322211 1123334444555555431 1344455565442 1234455556666 88999999765421
Q ss_pred chhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEE---EecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 221 RYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPII---GVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 221 ~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvi---a~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
..+.++++.+.++ .|++ ..+|-+-.-.+.++-++|...|..+..++
T Consensus 185 ------------------------~~e~i~~~~~~i~--~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~ 233 (285)
T TIGR02317 185 ------------------------SLEEFRQFAKAVK--VPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAF 233 (285)
T ss_pred ------------------------CHHHHHHHHHhcC--CCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHH
Confidence 2466788888887 7873 33443222356677789999999998775
No 346
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.60 E-value=0.16 Score=47.84 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=56.8
Q ss_pred CEEEEeCCCCChhhHHHHHHHhccccCCc--cEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC
Q psy5880 181 PILVKIAPDLSLDEKKDIADVVLDSKCKV--DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG 258 (328)
Q Consensus 181 Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~--d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~ 258 (328)
.+++=++.+.+.++..+ ++.+ .++|+ |.|.+-.+.. . .....++++.+++.++
T Consensus 85 ~l~v~~~vg~~~~~~~~-~~~L--v~ag~~~d~i~iD~a~g----------------h-----~~~~~e~I~~ir~~~p- 139 (326)
T PRK05458 85 GLIASISVGVKDDEYDF-VDQL--AAEGLTPEYITIDIAHG----------------H-----SDSVINMIQHIKKHLP- 139 (326)
T ss_pred ccEEEEEecCCHHHHHH-HHHH--HhcCCCCCEEEEECCCC----------------c-----hHHHHHHHHHHHhhCC-
Confidence 44676666665555555 4556 68855 9987743321 0 1234678999999876
Q ss_pred CccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 259 KLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 259 ~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
++| +..|.|.|.+++..++++|||++.+|
T Consensus 140 ~~~-vi~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 140 ETF-VIAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred CCe-EEEEecCCHHHHHHHHHcCcCEEEEC
Confidence 244 44566889999999999999999877
No 347
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=95.60 E-value=0.0069 Score=51.74 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=54.5
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.++.-+-|+-. ++..-+....+.+ .+...|+|-+--. . .-+.++++++.++
T Consensus 90 ~gl~tIqRiFl-iDS~al~~~~~~i--~~~~PD~vEilPg-----------------------~---~p~vi~~i~~~~~ 140 (175)
T PF04309_consen 90 LGLLTIQRIFL-IDSSALETGIKQI--EQSKPDAVEILPG-----------------------V---MPKVIKKIREETN 140 (175)
T ss_dssp TT-EEEEEEE--SSHHHHHHHHHHH--HHHT-SEEEEESC-----------------------C---HHHHHCCCCCCCS
T ss_pred cCCEEEEEeee-ecHHHHHHHHHHH--hhcCCCEEEEchH-----------------------H---HHHHHHHHHHhcC
Confidence 35566666643 3444566667777 7788888854421 1 1245667777776
Q ss_pred CCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 258 GKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 258 ~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
+|||+.|=|++.+|+.+++++||.+|.....-+|
T Consensus 141 --~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 141 --IPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp --S-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred --CCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 9999999999999999999999999987755443
No 348
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=95.58 E-value=0.35 Score=42.77 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCh-----h
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSL-----D 193 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~-----~ 193 (328)
...+.++++++...+ +.++++ .+ .+.++.+++. .++|++.-...+++. .
T Consensus 26 ~~~i~~~a~~~~~~G--~~~~~~--~~---------------~~~~~~i~~~-------~~iPil~~~~~~~~~~~~~ig 79 (219)
T cd04729 26 PEIMAAMALAAVQGG--AVGIRA--NG---------------VEDIRAIRAR-------VDLPIIGLIKRDYPDSEVYIT 79 (219)
T ss_pred HHHHHHHHHHHHHCC--CeEEEc--CC---------------HHHHHHHHHh-------CCCCEEEEEecCCCCCCceeC
Confidence 346777777777766 666662 11 1334455544 578986422111110 0
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
...+.++.+ .++|+|+|.+.......+ ......++++++++..+ ++++. ++.|.++
T Consensus 80 ~~~~~~~~a--~~aGad~I~~~~~~~~~p------------------~~~~~~~~i~~~~~~g~--~~iiv--~v~t~~e 135 (219)
T cd04729 80 PTIEEVDAL--AAAGADIIALDATDRPRP------------------DGETLAELIKRIHEEYN--CLLMA--DISTLEE 135 (219)
T ss_pred CCHHHHHHH--HHcCCCEEEEeCCCCCCC------------------CCcCHHHHHHHHHHHhC--CeEEE--ECCCHHH
Confidence 012345777 899999876653221100 00123466777777653 77766 7899999
Q ss_pred HHHHHHhccCeeeeh
Q psy5880 274 AFEKIKAGASLVQIY 288 (328)
Q Consensus 274 a~~~l~~GAd~V~vg 288 (328)
+..+..+|+|.+.+.
T Consensus 136 a~~a~~~G~d~i~~~ 150 (219)
T cd04729 136 ALNAAKLGFDIIGTT 150 (219)
T ss_pred HHHHHHcCCCEEEcc
Confidence 999999999999763
No 349
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=95.58 E-value=0.94 Score=40.81 Aligned_cols=177 Identities=18% Similarity=0.173 Sum_probs=95.8
Q ss_pred CcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccC-CC
Q psy5880 68 TANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVS-SP 146 (328)
Q Consensus 68 ~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~s-cP 146 (328)
+.|+++.+ .-.+.++++.++...... ..|+.+-+ .-|.- .+...+...++...+++ +.++.|.=. |-
T Consensus 43 s~G~pD~~-~lt~~e~~~~~~~I~~~~----~iPv~vD~----d~GyG-~~~~~v~~tv~~~~~aG--~agi~IEDq~~~ 110 (238)
T PF13714_consen 43 SLGYPDGG-LLTLTEMLAAVRRIARAV----SIPVIVDA----DTGYG-NDPENVARTVRELERAG--AAGINIEDQRCG 110 (238)
T ss_dssp HTTS-SSS--S-HHHHHHHHHHHHHHS----SSEEEEE-----TTTSS-SSHHHHHHHHHHHHHCT---SEEEEESBSTT
T ss_pred HcCCCCCC-CCCHHHHHHHHHHHHhhh----cCcEEEEc----ccccC-chhHHHHHHHHHHHHcC--CcEEEeeccccC
Confidence 34666543 233455555555444322 35765432 22210 01345566666666666 777766422 43
Q ss_pred CCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC----ChhhHHHHHHHhccccCCccEEEEecCCccch
Q psy5880 147 NTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL----SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRY 222 (328)
Q Consensus 147 n~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~----~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~ 222 (328)
+ .+.. ....+...+-+++++++++. .++-|+.+.-... ..++..+=++.. .++|+|.|.+.+..
T Consensus 111 ~-~~~~-l~~~ee~~~kI~Aa~~a~~~----~~~~I~ARTDa~~~~~~~~deaI~R~~aY--~eAGAD~ifi~~~~---- 178 (238)
T PF13714_consen 111 H-GGKQ-LVSPEEMVAKIRAAVDARRD----PDFVIIARTDAFLRAEEGLDEAIERAKAY--AEAGADMIFIPGLQ---- 178 (238)
T ss_dssp T-STT--B--HHHHHHHHHHHHHHHSS----TTSEEEEEECHHCHHHHHHHHHHHHHHHH--HHTT-SEEEETTSS----
T ss_pred C-CCCc-eeCHHHHHHHHHHHHHhccC----CeEEEEEeccccccCCCCHHHHHHHHHHH--HHcCCCEEEeCCCC----
Confidence 2 2222 22344555555666655432 4566777876533 223445555666 88999999665421
Q ss_pred hhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 223 EYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 223 ~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
..+.++++.+.++ .|+..+-+ ...-++.++-+.|...|..+..++.
T Consensus 179 ----------------------~~~~i~~~~~~~~--~Pl~v~~~-~~~~~~~eL~~lGv~~v~~~~~~~~ 224 (238)
T PF13714_consen 179 ----------------------SEEEIERIVKAVD--GPLNVNPG-PGTLSAEELAELGVKRVSYGNSLLR 224 (238)
T ss_dssp ----------------------SHHHHHHHHHHHS--SEEEEETT-SSSS-HHHHHHTTESEEEETSHHHH
T ss_pred ----------------------CHHHHHHHHHhcC--CCEEEEcC-CCCCCHHHHHHCCCcEEEEcHHHHH
Confidence 1244778887776 88877764 3237778888899999998887753
No 350
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=95.57 E-value=0.94 Score=42.81 Aligned_cols=115 Identities=11% Similarity=0.170 Sum_probs=76.1
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCcc---EEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHH
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVD---GLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYK 254 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d---~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~ 254 (328)
.++||+++... .+.+++...++.+ .+.|.. .+.++.+. .+| . +....+|..+..+++
T Consensus 132 ~gkPvilStGm-atl~Ei~~Av~~i--~~~G~~~~~i~llhC~s-~YP---------------~-~~~~~nL~~I~~Lk~ 191 (329)
T TIGR03569 132 FGKPVILSTGM-ATLEEIEAAVGVL--RDAGTPDSNITLLHCTT-EYP---------------A-PFEDVNLNAMDTLKE 191 (329)
T ss_pred cCCcEEEECCC-CCHHHHHHHHHHH--HHcCCCcCcEEEEEECC-CCC---------------C-CcccCCHHHHHHHHH
Confidence 57899999888 4778899999999 888875 44555432 221 1 122356888999999
Q ss_pred HcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh--hc--------CchHHHHHHHHHHHHHHHhC
Q psy5880 255 LTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV--YH--------GPPLVTRIKSELEELLQKEG 314 (328)
Q Consensus 255 ~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l--~~--------gp~~~~~i~~~l~~~m~~~g 314 (328)
.++ +||..++=-....-...++.+||+.|...--+= .. +|+-++++.+.++..-...|
T Consensus 192 ~f~--~pVG~SdHt~G~~~~~aAvalGA~iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG 259 (329)
T TIGR03569 192 AFD--LPVGYSDHTLGIEAPIAAVALGATVIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALG 259 (329)
T ss_pred HhC--CCEEECCCCccHHHHHHHHHcCCCEEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcC
Confidence 886 999987654444555667789999887663221 01 24556777776665443333
No 351
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=95.55 E-value=1 Score=41.52 Aligned_cols=192 Identities=16% Similarity=0.199 Sum_probs=100.6
Q ss_pred HHHHhHHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccch
Q psy5880 39 AWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDI 118 (328)
Q Consensus 39 ~~~l~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~ 118 (328)
+.+.+.....++++.+++.++.+++..-...|. .....|+++++.+++.+ .|++. |+-.++ .
T Consensus 37 ~~~~~f~~~ivd~~~~~v~~vK~gla~f~~~G~---~G~~~l~~~i~~l~~~g--------~~Vil----D~K~~D---I 98 (278)
T PRK00125 37 DGLFEFCRIIVDATADLVAAFKPQIAYFEAHGA---EGLAQLERTIAYLREAG--------VLVIA----DAKRGD---I 98 (278)
T ss_pred HHHHHHHHHHHHhcCCcccEEeccHHHHHhcCc---hhhhHHHHHHHHHHHCC--------CcEEE----EeecCC---h
Confidence 344455567777888888887777533333331 13445666777777653 35443 332222 1
Q ss_pred hHHHHHHHHHHH--HhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC--C---
Q psy5880 119 ADVVLDSVKGIL--KFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL--S--- 191 (328)
Q Consensus 119 ~~~i~~~~~~a~--~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~--~--- 191 (328)
......+++++- .++ +|++++|-. . |. +.+...++..++. + ..+=|.++.|-.- +
T Consensus 99 ~nTv~~ya~a~~~~~~g--~DavTVhp~---~-G~------d~l~~~~~~~~~~----~--k~vfVlvlTSnp~s~~lq~ 160 (278)
T PRK00125 99 GSTAEAYAKAAFESPLE--ADAVTVSPY---M-GF------DSLEPYLEYAEEH----G--KGVFVLCRTSNPGGSDLQF 160 (278)
T ss_pred HHHHHHHHHHHhcCccC--CcEEEECCc---C-CH------HHHHHHHHHHHhc----C--CEEEEEEeCCCCCHHHHHh
Confidence 345667777765 344 999998743 1 22 2233333333221 1 2344566666321 0
Q ss_pred --------h-hhHHHHHHHhcccc-----CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 192 --------L-DEKKDIADVVLDSK-----CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 192 --------~-~~~~~~a~~l~~~~-----~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
. +.+.+.+... .+ .|.+|+++..|.. +.++.+|+.++
T Consensus 161 ~~~~~~~~l~~~V~~~a~~~--~~~~~~~~g~~G~VVgaT~p---------------------------~e~~~iR~~~~ 211 (278)
T PRK00125 161 LRTADGRPLYQHVADLAAAL--NNLGNCGYGSIGLVVGATFP---------------------------PELAAVRKILG 211 (278)
T ss_pred hhccCCCcHHHHHHHHHHHH--hccccCCCCCCEEEECCCCH---------------------------HHHHHHHHhCC
Confidence 0 1122233333 33 6778866655421 23577777775
Q ss_pred CCccEEEecCCC----CHHHHHHHHHhc--cCeeeehhHHhhcCch
Q psy5880 258 GKLPIIGVGGVF----SGKDAFEKIKAG--ASLVQIYTSFVYHGPP 297 (328)
Q Consensus 258 ~~ipvia~GGI~----s~~da~~~l~~G--Ad~V~vg~a~l~~gp~ 297 (328)
+ ++ |.+=||. +++|+.++...+ .=+|-+.|++++.+|.
T Consensus 212 ~-~~-iL~PGigaQGg~~~~~~~~~~~~~~~~l~~~SR~il~a~~~ 255 (278)
T PRK00125 212 G-MP-LLIPGIGAQGGDAEATVRAGGAAGNGGIPNSSRAILYAGPG 255 (278)
T ss_pred C-Ce-EEeCCcCCCCcCHHHHHHHhhhcCCCEEeecCHHHHcCCCc
Confidence 3 44 5555564 456666554321 2346778999977665
No 352
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=95.55 E-value=0.17 Score=44.34 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=80.8
Q ss_pred CcchhcccC-CcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCC
Q psy5880 100 PPILVKIAP-DLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVK 177 (328)
Q Consensus 100 ~Pv~vki~~-~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~ 177 (328)
.|+.+=|-| +-+ -..++++++.+.+.++.+.+ ++|++.+-+.-|+. . -+.+.+.+++++.
T Consensus 51 ipv~vMIRpr~gd---F~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg--~---iD~~~~~~Li~~a---------- 112 (201)
T PF03932_consen 51 IPVHVMIRPRGGD---FVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDG--E---IDEEALEELIEAA---------- 112 (201)
T ss_dssp SEEEEE--SSSS----S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTS--S---B-HHHHHHHHHHH----------
T ss_pred CceEEEECCCCCC---ccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCC--C---cCHHHHHHHHHhc----------
Confidence 576544433 222 22356778888888877776 79999954442322 1 1334455555442
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.+.|+.+--..+... +..+..+.+ .+.|++.|-.++.... . ..+++.++++.+...
T Consensus 113 ~~~~~tFHRAfD~~~-d~~~al~~L--~~lG~~rVLTSGg~~~-------------------a--~~g~~~L~~lv~~a~ 168 (201)
T PF03932_consen 113 GGMPVTFHRAFDEVP-DPEEALEQL--IELGFDRVLTSGGAPT-------------------A--LEGIENLKELVEQAK 168 (201)
T ss_dssp TTSEEEE-GGGGGSS-THHHHHHHH--HHHT-SEEEESTTSSS-------------------T--TTCHHHHHHHHHHHT
T ss_pred CCCeEEEeCcHHHhC-CHHHHHHHH--HhcCCCEEECCCCCCC-------------------H--HHHHHHHHHHHHHcC
Confidence 467888866555433 245566777 7899999855543211 0 123566777666655
Q ss_pred CCccEEEecCCCCHHHHHHHHH-hccCeeee
Q psy5880 258 GKLPIIGVGGVFSGKDAFEKIK-AGASLVQI 287 (328)
Q Consensus 258 ~~ipvia~GGI~s~~da~~~l~-~GAd~V~v 287 (328)
+++.|++.|||+ ++.+.+.++ +|+..+-.
T Consensus 169 ~~i~Im~GgGv~-~~nv~~l~~~tg~~~~H~ 198 (201)
T PF03932_consen 169 GRIEIMPGGGVR-AENVPELVEETGVREIHG 198 (201)
T ss_dssp TSSEEEEESS---TTTHHHHHHHHT-SEEEE
T ss_pred CCcEEEecCCCC-HHHHHHHHHhhCCeEEee
Confidence 679999999995 566666666 88877653
No 353
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=95.52 E-value=0.98 Score=41.67 Aligned_cols=162 Identities=17% Similarity=0.248 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHH----HHHHHHhhcCCCCCCEEEE---------
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKT----VVETRNQLAVKPLPPILVK--------- 185 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~----v~~~~~~~~~~~~~Pv~vK--------- 185 (328)
++.+.++-++-.+++ +|.|+.|...-|+-.+...+-.+.+.++-+. .|++.+..+ .+.|.+|=
T Consensus 52 Pd~I~~IH~aY~eAG--ADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~--~~k~rfVaGsiGPt~k~ 127 (311)
T COG0646 52 PDVIEAIHRAYIEAG--ADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAG--DPKPRFVAGSIGPTNKT 127 (311)
T ss_pred cHHHHHHHHHHHhcc--CcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcC--CCCceEEEEeccCcCCc
Confidence 466777777777777 9999999553343222211111223333222 222222111 11566653
Q ss_pred --eCC--CCChhh----HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 186 --IAP--DLSLDE----KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 186 --l~~--~~~~~~----~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
+++ ..+-++ +.+-++.| .+-|+|.+ +.-|.+..- ....++..++++-+...
T Consensus 128 ~~~~~~~~v~fd~l~~ay~eq~~~L--i~gG~D~i-LiET~~D~l------------------~~KaA~~a~~~~~~~~~ 186 (311)
T COG0646 128 LSISPDFAVTFDELVEAYREQVEGL--IDGGADLI-LIETIFDTL------------------NAKAAVFAAREVFEELG 186 (311)
T ss_pred CCcCCcccccHHHHHHHHHHHHHHH--HhCCCcEE-EEehhccHH------------------HHHHHHHHHHHHHHhcC
Confidence 222 122332 34455667 88999988 444544310 00123444555544444
Q ss_pred CCccEEEecCCC---------CHHHHHHHHH-hccCeeeehhHHhhcCchHHHHHHHHHHH
Q psy5880 258 GKLPIIGVGGVF---------SGKDAFEKIK-AGASLVQIYTSFVYHGPPLVTRIKSELEE 308 (328)
Q Consensus 258 ~~ipvia~GGI~---------s~~da~~~l~-~GAd~V~vg~a~l~~gp~~~~~i~~~l~~ 308 (328)
-++||+.+|-|. +++++...++ +|++.|++=-++ ||+..+...+++..
T Consensus 187 ~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~~~~~~vGlNCa~---Gp~~m~~~l~~ls~ 244 (311)
T COG0646 187 VRLPVMISGTITDSGRTLSGQTIEAFLNSLEHLGPDAVGLNCAL---GPDEMRPHLRELSR 244 (311)
T ss_pred CcccEEEEEEEecCceecCCCcHHHHHHHhhccCCcEEeecccc---CHHHHHHHHHHHHh
Confidence 469999998765 3555665555 788888766554 78777666666554
No 354
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.52 E-value=0.49 Score=40.46 Aligned_cols=128 Identities=15% Similarity=0.166 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCC-CCCEEEEeCCCC---ChhhH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKP-LPPILVKIAPDL---SLDEK 195 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~-~~Pv~vKl~~~~---~~~~~ 195 (328)
+....+++.+.+.+ ++++.++- ++++.+++.. . . ++|+++++.... ..++.
T Consensus 13 ~~~~~~~~~~~~~g--v~gi~~~g------------------~~i~~~~~~~---~--~~~~~v~~~v~~~~~~~~~~~~ 67 (201)
T cd00945 13 EDIAKLCDEAIEYG--FAAVCVNP------------------GYVRLAADAL---A--GSDVPVIVVVGFPTGLTTTEVK 67 (201)
T ss_pred HHHHHHHHHHHHhC--CcEEEECH------------------HHHHHHHHHh---C--CCCCeEEEEecCCCCCCcHHHH
Confidence 45566666665555 89988642 4444444442 1 3 689999998764 13467
Q ss_pred HHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEe--cCCC-CHH
Q psy5880 196 KDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGV--GGVF-SGK 272 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~--GGI~-s~~ 272 (328)
.+.++.+ .++|+|++.+....+.. .++ ......+.++++++.++.++|++.- -+-. +++
T Consensus 68 ~~~a~~a--~~~Gad~i~v~~~~~~~--------------~~~--~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~ 129 (201)
T cd00945 68 VAEVEEA--IDLGADEIDVVINIGSL--------------KEG--DWEEVLEEIAAVVEAADGGLPLKVILETRGLKTAD 129 (201)
T ss_pred HHHHHHH--HHcCCCEEEEeccHHHH--------------hCC--CHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHH
Confidence 7888988 89999999876433211 111 0123456777777774223887742 2223 677
Q ss_pred HHHHH----HHhccCeeeehhH
Q psy5880 273 DAFEK----IKAGASLVQIYTS 290 (328)
Q Consensus 273 da~~~----l~~GAd~V~vg~a 290 (328)
...++ ...|+++|-..++
T Consensus 130 ~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 130 EIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred HHHHHHHHHHHhCCCEEEeCCC
Confidence 76664 2478999987765
No 355
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.49 E-value=0.067 Score=53.46 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=53.6
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..+.++.| .++|+|.|.+.++. + ++ ...++.++++++.++.+ -.|+.|.|-|+++
T Consensus 242 ~~~~ra~~L--v~aGvd~i~vd~a~-g---------------~~-----~~~~~~i~~ir~~~~~~-~~V~aGnV~t~e~ 297 (502)
T PRK07107 242 DYAERVPAL--VEAGADVLCIDSSE-G---------------YS-----EWQKRTLDWIREKYGDS-VKVGAGNVVDREG 297 (502)
T ss_pred hHHHHHHHH--HHhCCCeEeecCcc-c---------------cc-----HHHHHHHHHHHHhCCCC-ceEEeccccCHHH
Confidence 456778888 89999999876321 1 11 13468899999987622 3577899999999
Q ss_pred HHHHHHhccCeeeeh
Q psy5880 274 AFEKIKAGASLVQIY 288 (328)
Q Consensus 274 a~~~l~~GAd~V~vg 288 (328)
+.+++.+|||+|-||
T Consensus 298 a~~li~aGAd~I~vg 312 (502)
T PRK07107 298 FRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHcCCCEEEEC
Confidence 999999999998773
No 356
>PRK08185 hypothetical protein; Provisional
Probab=95.48 E-value=1.2 Score=41.26 Aligned_cols=79 Identities=23% Similarity=0.367 Sum_probs=54.5
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCC--CcCchHHHHHHHHHHHHcCCCccEEEecCCCCH-
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG--EPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG- 271 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg--~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~- 271 (328)
+.+..+.. .+-|+|++.++-++.. |-|.+ ++ ...++.++++++.++ +|++.-||+..+
T Consensus 151 peea~~f~--~~TgvD~LAvaiGt~H-------------G~y~~~~kp--~L~~e~l~~I~~~~~--iPLVlHGgsg~~~ 211 (283)
T PRK08185 151 PEQAEDFV--SRTGVDTLAVAIGTAH-------------GIYPKDKKP--ELQMDLLKEINERVD--IPLVLHGGSANPD 211 (283)
T ss_pred HHHHHHHH--HhhCCCEEEeccCccc-------------CCcCCCCCC--CcCHHHHHHHHHhhC--CCEEEECCCCCCH
Confidence 44444545 5569999987533221 21222 22 134788999999887 999999999666
Q ss_pred HHHHHHHHhccCeeeehhHHh
Q psy5880 272 KDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 272 ~da~~~l~~GAd~V~vg~a~l 292 (328)
+++.+++..|..=|=++|.+.
T Consensus 212 e~~~~ai~~GI~KiNi~T~l~ 232 (283)
T PRK08185 212 AEIAESVQLGVGKINISSDMK 232 (283)
T ss_pred HHHHHHHHCCCeEEEeChHHH
Confidence 556678899988899999774
No 357
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=95.47 E-value=0.71 Score=42.20 Aligned_cols=189 Identities=18% Similarity=0.187 Sum_probs=99.2
Q ss_pred HHHHhHHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccch
Q psy5880 39 AWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDI 118 (328)
Q Consensus 39 ~~~l~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~ 118 (328)
+.+.+.....++++.+++..+.+++.--...|. .....|+++++.+++.+ .|++. |+-.++ .
T Consensus 37 ~~~~~f~~~ii~~l~~~v~~vK~g~~lf~~~G~---~gi~~l~~~~~~~~~~g--------~~Vil----D~K~~D---I 98 (261)
T TIGR02127 37 AGLQAFCLRIIDATAEYAAVVKPQVAFFERFGS---EGFKALEEVIAHARSLG--------LPVLA----DVKRGD---I 98 (261)
T ss_pred HHHHHHHHHHHHhcCCcceEEecCHHHHHhcCH---HHHHHHHHHHHHHHHCC--------CeEEE----EeeccC---h
Confidence 334455556677888888777777422222221 12334455555555432 34432 332222 1
Q ss_pred hHHHHHHHHHHH-HhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC-C---C---
Q psy5880 119 ADVVLDSVKGIL-KFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP-D---L--- 190 (328)
Q Consensus 119 ~~~i~~~~~~a~-~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~-~---~--- 190 (328)
......+++.+. ..+ +|++++|-.. |. +.+...++...+. + ..+=|.++.|. + +
T Consensus 99 pnTv~~~a~a~~~~~g--~D~vTvh~~~----G~------d~l~~~~~~~~~~----~--~~v~VlvlTSnp~~~~lq~~ 160 (261)
T TIGR02127 99 GSTASAYAKAWLGHLH--ADALTVSPYL----GL------DSLRPFLEYARAN----G--AGIFVLVKTSNPGGADLQDL 160 (261)
T ss_pred HHHHHHHHHHHHhhcC--CCEEEECCcC----CH------HHHHHHHHHHhhc----C--CEEEEEEeCCCCCHHHHhhh
Confidence 345667777765 444 8999987541 22 1233333332221 1 23445666664 2 1
Q ss_pred ------Ch-hhHHHHHHHhccccC----CccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCC
Q psy5880 191 ------SL-DEKKDIADVVLDSKC----KVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGK 259 (328)
Q Consensus 191 ------~~-~~~~~~a~~l~~~~~----G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ 259 (328)
+. +.+.++++.+ .+. |.+|+++..|.. +.++++|+.++ +
T Consensus 161 ~~~~~~~~~~~V~~~a~~~--~~~~~~~g~~GvV~gAT~p---------------------------~e~~~iR~~~~-~ 210 (261)
T TIGR02127 161 RVSDGRTVYEEVAELAGEL--NESPGDCSSVGAVVGATSP---------------------------GDLLRLRIEMP-T 210 (261)
T ss_pred hccCCCCHHHHHHHHHHHh--ccccCcCCceEEEECCCCH---------------------------HHHHHHHHhCC-C
Confidence 11 2344444444 333 678887655431 33566777763 4
Q ss_pred ccEEEecCC----CCHHHHHHHHH-hccC-eeeehhHHhhc
Q psy5880 260 LPIIGVGGV----FSGKDAFEKIK-AGAS-LVQIYTSFVYH 294 (328)
Q Consensus 260 ipvia~GGI----~s~~da~~~l~-~GAd-~V~vg~a~l~~ 294 (328)
++++ +=|| .+.+|....+- .|++ .+.+||+++..
T Consensus 211 ~~il-~PGigaqG~~~~d~~r~~~~~g~~~~ivvgR~I~~a 250 (261)
T TIGR02127 211 APFL-VPGFGAQGAEAADLRGLFGADGSGLLINSSRGVLFA 250 (261)
T ss_pred CeEE-eCCcCCCCCCHHHHHHHhcccCCCEEEEcCHHHhcC
Confidence 6544 3333 26778876553 5788 89999999754
No 358
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.46 E-value=0.17 Score=47.05 Aligned_cols=85 Identities=18% Similarity=0.248 Sum_probs=58.9
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++||++.=|-
T Consensus 23 iD~~~l~~li~~l--~~~Gv~gi~v~GstGE~~------------~Lt----~eEr~~v~~~~~~~~~g~~pvi~gv~~- 83 (296)
T TIGR03249 23 FDEAAYRENIEWL--LGYGLEALFAAGGTGEFF------------SLT----PAEYEQVVEIAVSTAKGKVPVYTGVGG- 83 (296)
T ss_pred cCHHHHHHHHHHH--HhcCCCEEEECCCCcCcc------------cCC----HHHHHHHHHHHHHHhCCCCcEEEecCc-
Confidence 5666788999999 899999999887764421 011 112245566667777778998866563
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhh
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVY 293 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~ 293 (328)
+.+++.+.. ++|||+|++-...++
T Consensus 84 ~t~~ai~~a~~a~~~Gadav~~~pP~y~ 111 (296)
T TIGR03249 84 NTSDAIEIARLAEKAGADGYLLLPPYLI 111 (296)
T ss_pred cHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 566665544 489999999888754
No 359
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.41 E-value=0.23 Score=45.79 Aligned_cols=91 Identities=18% Similarity=0.234 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcC
Q psy5880 162 HLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPL 241 (328)
Q Consensus 162 ~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~ 241 (328)
.+.++|+++++..+ ...+|.|=.. .+.++.+ + .++|+|.|-+-|-..
T Consensus 178 ~i~~av~~~r~~~~--~~~kIeVEv~------slee~~e-a--~~~gaDiImLDn~s~---------------------- 224 (281)
T PRK06543 178 DLTEALRHVRAQLG--HTTHVEVEVD------RLDQIEP-V--LAAGVDTIMLDNFSL---------------------- 224 (281)
T ss_pred HHHHHHHHHHHhCC--CCCcEEEEeC------CHHHHHH-H--HhcCCCEEEECCCCH----------------------
Confidence 46666666654321 1234444432 2445444 3 489999998877432
Q ss_pred chHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 242 RNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 242 ~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
+.++++.+.++++..+.++||| |.+.+.++..+|+|.+.+|+..
T Consensus 225 -----e~l~~av~~~~~~~~leaSGgI-~~~ni~~yA~tGVD~Is~galt 268 (281)
T PRK06543 225 -----DDLREGVELVDGRAIVEASGNV-NLNTVGAIASTGVDVISVGALT 268 (281)
T ss_pred -----HHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccc
Confidence 2334433444445789999998 7899999999999999998854
No 360
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=95.40 E-value=0.1 Score=45.04 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=61.0
Q ss_pred HHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCE--EEEeCC-----CCChhhHH
Q psy5880 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPI--LVKIAP-----DLSLDEKK 196 (328)
Q Consensus 124 ~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv--~vKl~~-----~~~~~~~~ 196 (328)
.++.++...+ +.+|-+|- .+-+++||+. .++|| ++|-.. +.+. .+.
T Consensus 3 ~mA~Aa~~gG--A~giR~~~-----------------~~dI~aik~~-------v~lPIIGi~K~~y~~~~V~ITP-T~~ 55 (192)
T PF04131_consen 3 RMAKAAEEGG--AVGIRANG-----------------VEDIRAIKKA-------VDLPIIGIIKRDYPDSDVYITP-TLK 55 (192)
T ss_dssp HHHHHHHHCT---SEEEEES-----------------HHHHHHHHTT-------B-S-EEEE-B-SBTTSS--BS--SHH
T ss_pred HHHHHHHHCC--ceEEEcCC-----------------HHHHHHHHHh-------cCCCEEEEEeccCCCCCeEECC-CHH
Confidence 4566666655 77776541 1224455554 67898 456421 1221 123
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHH
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFE 276 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~ 276 (328)
+ ++.+ .++|+|.|-+-.|...+| ..--++++++++.. ..+ ...|.|.+|+..
T Consensus 56 e-v~~l--~~aGadIIAlDaT~R~Rp--------------------~~l~~li~~i~~~~---~l~--MADist~ee~~~ 107 (192)
T PF04131_consen 56 E-VDAL--AEAGADIIALDATDRPRP--------------------ETLEELIREIKEKY---QLV--MADISTLEEAIN 107 (192)
T ss_dssp H-HHHH--HHCT-SEEEEE-SSSS-S--------------------S-HHHHHHHHHHCT---SEE--EEE-SSHHHHHH
T ss_pred H-HHHH--HHcCCCEEEEecCCCCCC--------------------cCHHHHHHHHHHhC---cEE--eeecCCHHHHHH
Confidence 3 4667 799999988777655432 11236788888864 344 458999999999
Q ss_pred HHHhccCeee
Q psy5880 277 KIKAGASLVQ 286 (328)
Q Consensus 277 ~l~~GAd~V~ 286 (328)
+.++|+|.|.
T Consensus 108 A~~~G~D~I~ 117 (192)
T PF04131_consen 108 AAELGFDIIG 117 (192)
T ss_dssp HHHTT-SEEE
T ss_pred HHHcCCCEEE
Confidence 9999999985
No 361
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.37 E-value=0.043 Score=49.61 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=80.0
Q ss_pred ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCC
Q psy5880 191 SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFS 270 (328)
Q Consensus 191 ~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s 270 (328)
+.+++.++|+.+ .++|+..+--.. +.-| .....+.|+.. .+++++.++++..+ +|++. -+++
T Consensus 27 s~e~~~~~a~~~--~~~g~~~~r~g~-~kpR---------ts~~sf~G~G~--~gl~~L~~~~~~~G--l~~~T--ev~d 88 (250)
T PRK13397 27 SYDHIRLAASSA--KKLGYNYFRGGA-YKPR---------TSAASFQGLGL--QGIRYLHEVCQEFG--LLSVS--EIMS 88 (250)
T ss_pred CHHHHHHHHHHH--HHcCCCEEEecc-cCCC---------CCCcccCCCCH--HHHHHHHHHHHHcC--CCEEE--eeCC
Confidence 456788999999 999988763221 1101 11233455544 37899999998887 99888 6899
Q ss_pred HHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhC-CCCHHHHhcc
Q psy5880 271 GKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEG-YNSVSQAVGA 324 (328)
Q Consensus 271 ~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g-~~si~e~~G~ 324 (328)
.+++..+.+ .+|+++||+..+. +..+++.+.+.-+-.+-++| +.+++|+.+.
T Consensus 89 ~~~v~~~~e-~vdilqIgs~~~~-n~~LL~~va~tgkPVilk~G~~~t~~e~~~A 141 (250)
T PRK13397 89 ERQLEEAYD-YLDVIQVGARNMQ-NFEFLKTLSHIDKPILFKRGLMATIEEYLGA 141 (250)
T ss_pred HHHHHHHHh-cCCEEEECccccc-CHHHHHHHHccCCeEEEeCCCCCCHHHHHHH
Confidence 999999887 6999999999874 47777776543333445566 7777777654
No 362
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.35 E-value=0.08 Score=51.26 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=52.2
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..+.++.| .++|+|.|++-.+.. .+ ....++++.+++.++ +++ +..|+|.|.+++
T Consensus 154 ~~~~v~~l--v~aGvDvI~iD~a~g----------------~~-----~~~~~~v~~ik~~~p-~~~-vi~g~V~T~e~a 208 (404)
T PRK06843 154 TIERVEEL--VKAHVDILVIDSAHG----------------HS-----TRIIELVKKIKTKYP-NLD-LIAGNIVTKEAA 208 (404)
T ss_pred HHHHHHHH--HhcCCCEEEEECCCC----------------CC-----hhHHHHHHHHHhhCC-CCc-EEEEecCCHHHH
Confidence 45677888 899999998644321 11 123578889998875 355 556899999999
Q ss_pred HHHHHhccCeeeeh
Q psy5880 275 FEKIKAGASLVQIY 288 (328)
Q Consensus 275 ~~~l~~GAd~V~vg 288 (328)
..++++|||+|.+|
T Consensus 209 ~~l~~aGaD~I~vG 222 (404)
T PRK06843 209 LDLISVGADCLKVG 222 (404)
T ss_pred HHHHHcCCCEEEEC
Confidence 99999999999876
No 363
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=95.35 E-value=0.32 Score=46.12 Aligned_cols=87 Identities=16% Similarity=0.147 Sum_probs=55.7
Q ss_pred HHHHHHHhhcCc-cceEEeccCCCCCc------CccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCccccccc
Q psy5880 44 FWLLGILKFGDV-AHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKK 116 (328)
Q Consensus 44 ~y~~~~~~l~~~-~~~v~~n~sspN~~------gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~ 116 (328)
+|.+.++.+... .|.|++|.+||+.. |-.-+.+++-+.++++++++.- ..|+.+|+..+..-.
T Consensus 78 ~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v-------~~pVsvKiR~g~~~~--- 147 (333)
T PRK11815 78 DLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV-------SIPVTVKHRIGIDDQ--- 147 (333)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc-------CCceEEEEEeeeCCC---
Confidence 555655554443 58999999999652 2222346777888888887653 268888875443210
Q ss_pred chhHHHHHHHHHHHHhcccccEEEEc
Q psy5880 117 DIADVVLDSVKGILKFGDVAHYFVVN 142 (328)
Q Consensus 117 ~~~~~i~~~~~~a~~~~~~~d~ieiN 142 (328)
.+.+...++++.++.++ +|+|.+|
T Consensus 148 ~t~~~~~~~~~~l~~aG--~d~i~vh 171 (333)
T PRK11815 148 DSYEFLCDFVDTVAEAG--CDTFIVH 171 (333)
T ss_pred cCHHHHHHHHHHHHHhC--CCEEEEc
Confidence 12344567777777666 9999987
No 364
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=95.35 E-value=0.35 Score=46.35 Aligned_cols=133 Identities=20% Similarity=0.229 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHH
Q psy5880 118 IADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKD 197 (328)
Q Consensus 118 ~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ 197 (328)
.++.++.|++.+.+-+ .|.+-+ |-. +.+.+++..-++++++. +.+...-+..-+||-.+.+-..+
T Consensus 96 aDDvVe~Fv~ka~~nG--idvfRi-FDA--------lND~RNl~~ai~a~kk~----G~h~q~~i~YT~sPvHt~e~yv~ 160 (472)
T COG5016 96 ADDVVEKFVEKAAENG--IDVFRI-FDA--------LNDVRNLKTAIKAAKKH----GAHVQGTISYTTSPVHTLEYYVE 160 (472)
T ss_pred chHHHHHHHHHHHhcC--CcEEEe-chh--------ccchhHHHHHHHHHHhc----CceeEEEEEeccCCcccHHHHHH
Confidence 4678999998887665 666653 322 22455666677777764 32344566777888888888999
Q ss_pred HHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH---HHH
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG---KDA 274 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~---~da 274 (328)
+++.+ .+.|+|.|.+-.. .|+..| ..+.+.|+.+++.++ +||-.-.--+++ --.
T Consensus 161 ~akel--~~~g~DSIciKDm----------------aGlltP---~~ayelVk~iK~~~~--~pv~lHtH~TsG~a~m~y 217 (472)
T COG5016 161 LAKEL--LEMGVDSICIKDM----------------AGLLTP---YEAYELVKAIKKELP--VPVELHTHATSGMAEMTY 217 (472)
T ss_pred HHHHH--HHcCCCEEEeecc----------------cccCCh---HHHHHHHHHHHHhcC--CeeEEecccccchHHHHH
Confidence 99999 9999999965321 222211 245789999999988 888754433333 234
Q ss_pred HHHHHhccCeeeeh
Q psy5880 275 FEKIKAGASLVQIY 288 (328)
Q Consensus 275 ~~~l~~GAd~V~vg 288 (328)
.+++++|+|.+--+
T Consensus 218 lkAvEAGvD~iDTA 231 (472)
T COG5016 218 LKAVEAGVDGIDTA 231 (472)
T ss_pred HHHHHhCcchhhhh
Confidence 56678999987544
No 365
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.28 E-value=0.22 Score=46.18 Aligned_cols=87 Identities=25% Similarity=0.349 Sum_probs=58.3
Q ss_pred CChhhHHHHHHHhccccC-CccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCC
Q psy5880 190 LSLDEKKDIADVVLDSKC-KVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGV 268 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~-G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI 268 (328)
++.+.+..+++.+ .+. |+++|.+.+++...+ -++ ...-.+.++.+.+.+.+++|||+.=|-
T Consensus 18 iD~~~~~~~i~~l--~~~~Gv~gi~~~GstGE~~------------~Lt----~~Er~~~~~~~~~~~~~~~~viagv~~ 79 (288)
T cd00954 18 INEDVLRAIVDYL--IEKQGVDGLYVNGSTGEGF------------LLS----VEERKQIAEIVAEAAKGKVTLIAHVGS 79 (288)
T ss_pred CCHHHHHHHHHHH--HhcCCCCEEEECcCCcCcc------------cCC----HHHHHHHHHHHHHHhCCCCeEEeccCC
Confidence 5666788899999 889 999998887764321 011 112345666667777778999864443
Q ss_pred CCHHHHHH----HHHhccCeeeehhHHhhc
Q psy5880 269 FSGKDAFE----KIKAGASLVQIYTSFVYH 294 (328)
Q Consensus 269 ~s~~da~~----~l~~GAd~V~vg~a~l~~ 294 (328)
.+.+++.+ +.++|||+|++...+++.
T Consensus 80 ~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~ 109 (288)
T cd00954 80 LNLKESQELAKHAEELGYDAISAITPFYYK 109 (288)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 45555544 345899999998887543
No 366
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.27 E-value=0.49 Score=41.89 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC-----CChh
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD-----LSLD 193 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~-----~~~~ 193 (328)
.+...++++++..++ +.+++++ + .+.++++++. .++|++..+.-+ +-..
T Consensus 22 ~~~~~~~a~a~~~~G--~~~~~~~-----~------------~~~i~~i~~~-------~~~Pil~~~~~d~~~~~~~~~ 75 (221)
T PRK01130 22 PEIMAAMALAAVQGG--AVGIRAN-----G------------VEDIKAIRAV-------VDVPIIGIIKRDYPDSEVYIT 75 (221)
T ss_pred HHHHHHHHHHHHHCC--CeEEEcC-----C------------HHHHHHHHHh-------CCCCEEEEEecCCCCCCceEC
Confidence 456788888888877 7777641 0 2455666654 678987443311 1000
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
...+.++.+ .++|+|.|.+.......+ .+ ....++++++++. ..++++. ++++.++
T Consensus 76 ~~~~~v~~a--~~aGad~I~~d~~~~~~p--------------~~----~~~~~~i~~~~~~--~~i~vi~--~v~t~ee 131 (221)
T PRK01130 76 PTLKEVDAL--AAAGADIIALDATLRPRP--------------DG----ETLAELVKRIKEY--PGQLLMA--DCSTLEE 131 (221)
T ss_pred CCHHHHHHH--HHcCCCEEEEeCCCCCCC--------------CC----CCHHHHHHHHHhC--CCCeEEE--eCCCHHH
Confidence 112345777 899999876654321000 00 1123566777664 2477775 6889999
Q ss_pred HHHHHHhccCeeeeh
Q psy5880 274 AFEKIKAGASLVQIY 288 (328)
Q Consensus 274 a~~~l~~GAd~V~vg 288 (328)
+.++..+|+|.+.+.
T Consensus 132 ~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 132 GLAAQKLGFDFIGTT 146 (221)
T ss_pred HHHHHHcCCCEEEcC
Confidence 999999999999774
No 367
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.26 E-value=0.23 Score=46.14 Aligned_cols=86 Identities=23% Similarity=0.270 Sum_probs=58.2
Q ss_pred CChhhHHHHHHHhccccCC-ccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCC
Q psy5880 190 LSLDEKKDIADVVLDSKCK-VDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGV 268 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G-~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI 268 (328)
++.+.+.++++.+ .+.| +++|.+.+++.... .++ ...-.+.++.+.+.+++++||++.=|-
T Consensus 18 iD~~~~~~~i~~~--i~~G~v~gi~~~GstGE~~------------~Lt----~eEr~~~~~~~~~~~~~~~pvi~gv~~ 79 (290)
T TIGR00683 18 INEKGLRQIIRHN--IDKMKVDGLYVGGSTGENF------------MLS----TEEKKEIFRIAKDEAKDQIALIAQVGS 79 (290)
T ss_pred cCHHHHHHHHHHH--HhCCCcCEEEECCcccccc------------cCC----HHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 4556788889999 8999 99998888764321 011 112345666677777778999765444
Q ss_pred CCHHHHHHHH----HhccCeeeehhHHhh
Q psy5880 269 FSGKDAFEKI----KAGASLVQIYTSFVY 293 (328)
Q Consensus 269 ~s~~da~~~l----~~GAd~V~vg~a~l~ 293 (328)
.+.+++.+.. ++|||+|++....++
T Consensus 80 ~~t~~~i~la~~a~~~Gad~v~v~~P~y~ 108 (290)
T TIGR00683 80 VNLKEAVELGKYATELGYDCLSAVTPFYY 108 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCcCC
Confidence 4555555433 489999999888754
No 368
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.26 E-value=0.81 Score=42.01 Aligned_cols=86 Identities=17% Similarity=0.219 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+....+++-.... +++++-+|-+ . |.-.....+.-.++++.+.+.. . .++||++-++...+ ++..+++
T Consensus 18 ~~~~~~i~~l~~~--Gv~gi~~~Gs--t--GE~~~ls~~Er~~l~~~~~~~~---~--~~~~vi~gv~~~~~-~~~i~~a 85 (281)
T cd00408 18 DALRRLVEFLIEA--GVDGLVVLGT--T--GEAPTLTDEERKEVIEAVVEAV---A--GRVPVIAGVGANST-REAIELA 85 (281)
T ss_pred HHHHHHHHHHHHc--CCCEEEECCC--C--cccccCCHHHHHHHHHHHHHHh---C--CCCeEEEecCCccH-HHHHHHH
Confidence 4455555555444 4999987655 2 2222222334455666655553 1 47899999887644 4678899
Q ss_pred HHhccccCCccEEEEecCCc
Q psy5880 200 DVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~ 219 (328)
+.+ +++|+|++.+....+
T Consensus 86 ~~a--~~~Gad~v~v~pP~y 103 (281)
T cd00408 86 RHA--EEAGADGVLVVPPYY 103 (281)
T ss_pred HHH--HHcCCCEEEECCCcC
Confidence 999 999999998876543
No 369
>KOG1799|consensus
Probab=95.23 E-value=0.0039 Score=57.98 Aligned_cols=61 Identities=21% Similarity=0.457 Sum_probs=55.8
Q ss_pred cCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc
Q psy5880 233 TGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH 294 (328)
Q Consensus 233 ~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~ 294 (328)
.||++|.+++|.+|+.+-.+.++.+ +.||.+.|+|.+.+.-.+++..||++.+++|++-..
T Consensus 21 ~g~~~~tai~p~~l~~v~s~a~~~s-~~~i~A~gdi~saeS~l~~~~~G~s~l~v~saiqs~ 81 (471)
T KOG1799|consen 21 YGGVSGTAIRPIALRAVTSIARALS-GFPILATGDIDSAESGLQFLHSGASVLQVCSAIQSQ 81 (471)
T ss_pred ccccchhhccchhHHHHHHHhhccC-CceeeccCCcchhhhcCccccccHHHHHHHHHHhcC
Confidence 4789999999999999999988886 599999999999999999999999999999999644
No 370
>KOG2335|consensus
Probab=95.22 E-value=0.29 Score=46.16 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=85.2
Q ss_pred HHHHHHHhhcCccceEEeccCCCCCc------CccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccc
Q psy5880 44 FWLLGILKFGDVAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKD 117 (328)
Q Consensus 44 ~y~~~~~~l~~~~~~v~~n~sspN~~------gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~ 117 (328)
...+-++-+.++.|.|.+|..||-.- |-.=+.+++-+.+++..+++.. ..|+.+||-...
T Consensus 87 ~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l-------~~pVs~KIRI~~------- 152 (358)
T KOG2335|consen 87 NLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANL-------NVPVSVKIRIFV------- 152 (358)
T ss_pred HHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhc-------CCCeEEEEEecC-------
Confidence 34444455778899999999999442 2222225666777777776654 257877775432
Q ss_pred hhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHH
Q psy5880 118 IADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKD 197 (328)
Q Consensus 118 ~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ 197 (328)
+.+.-.+|++.++.++ ++.+.+|---+...|.+ .+-.-.+.+++|++.. .++||++--.. . ...+
T Consensus 153 d~~kTvd~ak~~e~aG--~~~ltVHGRtr~~kg~~---~~pad~~~i~~v~~~~------~~ipviaNGnI--~--~~~d 217 (358)
T KOG2335|consen 153 DLEKTVDYAKMLEDAG--VSLLTVHGRTREQKGLK---TGPADWEAIKAVRENV------PDIPVIANGNI--L--SLED 217 (358)
T ss_pred cHHHHHHHHHHHHhCC--CcEEEEecccHHhcCCC---CCCcCHHHHHHHHHhC------cCCcEEeeCCc--C--cHHH
Confidence 2345677888888777 99999874433322321 1112234455666552 23788765322 2 1345
Q ss_pred HHHHhccccCCccEEEEecC
Q psy5880 198 IADVVLDSKCKVDGLIVSNT 217 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~ 217 (328)
+-+.+ +..|+|||.+..+
T Consensus 218 ~~~~~--~~tG~dGVM~arg 235 (358)
T KOG2335|consen 218 VERCL--KYTGADGVMSARG 235 (358)
T ss_pred HHHHH--HHhCCceEEecch
Confidence 55555 6699999966543
No 371
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.18 E-value=0.6 Score=44.55 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGE 239 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~ 239 (328)
-.+.+++||+. ++ .++.+.+.....++.++..++++.+ .+.++++|- .
T Consensus 172 d~~~v~air~~---~g--~~~~l~vDaN~~~~~~~A~~~~~~l--~~~~i~~iE-------e------------------ 219 (355)
T cd03321 172 DLAVVRSIRQA---VG--DGVGLMVDYNQSLTVPEAIERGQAL--DQEGLTWIE-------E------------------ 219 (355)
T ss_pred HHHHHHHHHHh---hC--CCCEEEEeCCCCcCHHHHHHHHHHH--HcCCCCEEE-------C------------------
Confidence 45667777776 33 5788999888888888889999999 888877762 1
Q ss_pred cCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHH
Q psy5880 240 PLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSF 291 (328)
Q Consensus 240 ~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~ 291 (328)
|..+..++..+++++.++ +||.+.-.+.+..++.+++..| +|.|++--..
T Consensus 220 P~~~~d~~~~~~l~~~~~--ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~ 270 (355)
T cd03321 220 PTLQHDYEGHARIASALR--TPVQMGENWLGPEEMFKALSAGACDLVMPDLMK 270 (355)
T ss_pred CCCCcCHHHHHHHHHhcC--CCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhh
Confidence 111223455677888887 9999888899999999999876 8888865443
No 372
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.17 E-value=2.6 Score=38.93 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=57.7
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH-HH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG-KD 273 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~-~d 273 (328)
+.+..+.+ .+.|+|.+-++-++. .|-|.+|. ..++.+++|++.++ +|++.-||=..+ ++
T Consensus 155 pe~a~~Fv--~~TgvD~LAvaiGt~-------------HG~Y~~p~---l~~~~l~~I~~~~~--vPLVlHGgSG~~~e~ 214 (283)
T PRK07998 155 PEKVKDFV--ERTGCDMLAVSIGNV-------------HGLEDIPR---IDIPLLKRIAEVSP--VPLVIHGGSGIPPEI 214 (283)
T ss_pred HHHHHHHH--HHhCcCeeehhcccc-------------ccCCCCCC---cCHHHHHHHHhhCC--CCEEEeCCCCCCHHH
Confidence 44555556 678999987654332 24455532 34678889999886 999999998877 67
Q ss_pred HHHHHHhccCeeeehhHHh
Q psy5880 274 AFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l 292 (328)
+.+++..|..=|-++|.+.
T Consensus 215 ~~~ai~~Gi~KiNi~Tel~ 233 (283)
T PRK07998 215 LRSFVNYKVAKVNIASDLR 233 (283)
T ss_pred HHHHHHcCCcEEEECHHHH
Confidence 7789999999999999874
No 373
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=95.16 E-value=0.26 Score=45.69 Aligned_cols=92 Identities=18% Similarity=0.188 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGE 239 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~ 239 (328)
...+.++|++++... ...||.|=... +.++.+. .++|+|.|-+-|...
T Consensus 192 ~G~i~~av~~~r~~~---~~~kIeVEv~s------leea~ea---~~~gaDiI~LDn~s~-------------------- 239 (296)
T PRK09016 192 SGSIRQAVEKAFWLH---PDVPVEVEVEN------LDELDQA---LKAGADIIMLDNFTT-------------------- 239 (296)
T ss_pred hCcHHHHHHHHHHhC---CCCCEEEEeCC------HHHHHHH---HHcCCCEEEeCCCCh--------------------
Confidence 334555555554322 33555555432 4454444 489999998777432
Q ss_pred cCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 240 PLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 240 ~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
+.++++.+..++++.+.++||| +.+.+.++-.+|+|.+.+|+..
T Consensus 240 -------e~~~~av~~~~~~~~ieaSGGI-~~~ni~~yA~tGVD~Is~galt 283 (296)
T PRK09016 240 -------EQMREAVKRTNGRALLEVSGNV-TLETLREFAETGVDFISVGALT 283 (296)
T ss_pred -------HHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccc
Confidence 2233333333446899999998 7899999999999999998854
No 374
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.16 E-value=0.31 Score=44.01 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC--ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDL--SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLS 237 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~--~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~s 237 (328)
+.+++..+++.++.. ...||++.+..+. +.++..+.++.+ .++|+++|.+=...
T Consensus 57 l~em~~~~~~I~r~~---~~~pviaD~~~G~g~~~~~~~~~~~~l--~~aGa~gv~iED~~------------------- 112 (240)
T cd06556 57 VNDVPYHVRAVRRGA---PLALIVADLPFGAYGAPTAAFELAKTF--MRAGAAGVKIEGGE------------------- 112 (240)
T ss_pred HHHHHHHHHHHHhhC---CCCCEEEeCCCCCCcCHHHHHHHHHHH--HHcCCcEEEEcCcH-------------------
Confidence 444454554443321 2479999998764 325677778888 88999999765421
Q ss_pred CCcCchHHHHHHHHHHHHcCCCccEEEecCCC---------------C-------HHHHHHHHHhccCeeeehhHHhhcC
Q psy5880 238 GEPLRNKSTELISEMYKLTKGKLPIIGVGGVF---------------S-------GKDAFEKIKAGASLVQIYTSFVYHG 295 (328)
Q Consensus 238 g~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~---------------s-------~~da~~~l~~GAd~V~vg~a~l~~g 295 (328)
...+.++.++++ .++|++=-|.. + .+.+..+.++|||+|.+- +. .
T Consensus 113 ------~~~~~i~ai~~a---~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e-~~---~ 179 (240)
T cd06556 113 ------WHIETLQMLTAA---AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVME-CV---P 179 (240)
T ss_pred ------HHHHHHHHHHHc---CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEc-CC---C
Confidence 112344444443 27777766652 1 233445556888888774 22 3
Q ss_pred chHHHHHHHHH
Q psy5880 296 PPLVTRIKSEL 306 (328)
Q Consensus 296 p~~~~~i~~~l 306 (328)
++.++++.+.+
T Consensus 180 ~e~~~~i~~~~ 190 (240)
T cd06556 180 VELAKQITEAL 190 (240)
T ss_pred HHHHHHHHHhC
Confidence 56677766553
No 375
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.15 E-value=0.08 Score=52.98 Aligned_cols=69 Identities=22% Similarity=0.215 Sum_probs=50.9
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..+-++.| .++|+|.|.+-.+. |. ....++.++++|+..+ +.+ +..|+|.|.+++
T Consensus 249 ~~~r~~~l--~~ag~d~i~iD~~~----------------g~-----~~~~~~~i~~ik~~~p-~~~-vi~g~v~t~e~a 303 (505)
T PLN02274 249 DKERLEHL--VKAGVDVVVLDSSQ----------------GD-----SIYQLEMIKYIKKTYP-ELD-VIGGNVVTMYQA 303 (505)
T ss_pred HHHHHHHH--HHcCCCEEEEeCCC----------------CC-----cHHHHHHHHHHHHhCC-CCc-EEEecCCCHHHH
Confidence 34567788 89999998765421 11 1234678999999875 244 456899999999
Q ss_pred HHHHHhccCeeeeh
Q psy5880 275 FEKIKAGASLVQIY 288 (328)
Q Consensus 275 ~~~l~~GAd~V~vg 288 (328)
..++++|||+|.+|
T Consensus 304 ~~a~~aGaD~i~vg 317 (505)
T PLN02274 304 QNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHcCcCEEEEC
Confidence 99999999999665
No 376
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.14 E-value=2.7 Score=38.81 Aligned_cols=178 Identities=20% Similarity=0.306 Sum_probs=97.4
Q ss_pred cceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhccc
Q psy5880 56 AHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDV 135 (328)
Q Consensus 56 ~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~ 135 (328)
.+-+.++-|+-....|. .+...++++.+.+... .+.|+++.+... +-+...++++.++.++
T Consensus 36 v~gl~~~GstGE~~~Lt----~~Er~~l~~~~~~~~~-----~~~~vi~gv~~~--------st~~~i~~a~~a~~~G-- 96 (289)
T PF00701_consen 36 VDGLVVLGSTGEFYSLT----DEERKELLEIVVEAAA-----GRVPVIAGVGAN--------STEEAIELARHAQDAG-- 96 (289)
T ss_dssp SSEEEESSTTTTGGGS-----HHHHHHHHHHHHHHHT-----TSSEEEEEEESS--------SHHHHHHHHHHHHHTT--
T ss_pred CCEEEECCCCcccccCC----HHHHHHHHHHHHHHcc-----CceEEEecCcch--------hHHHHHHHHHHHhhcC--
Confidence 56777776655554444 3344666776665542 346777665432 2345566666666666
Q ss_pred ccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC-----CCChhhHHHHHHHhccccC-Cc
Q psy5880 136 AHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP-----DLSLDEKKDIADVVLDSKC-KV 209 (328)
Q Consensus 136 ~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~-----~~~~~~~~~~a~~l~~~~~-G~ 209 (328)
+|++-+ ..|.... ...+.+.+..+.|.++ .++|+++=-.| .++. ..+ ..+ .+. .+
T Consensus 97 ad~v~v--~~P~~~~----~s~~~l~~y~~~ia~~-------~~~pi~iYn~P~~tg~~ls~---~~l-~~L--~~~~nv 157 (289)
T PF00701_consen 97 ADAVLV--IPPYYFK----PSQEELIDYFRAIADA-------TDLPIIIYNNPARTGNDLSP---ETL-ARL--AKIPNV 157 (289)
T ss_dssp -SEEEE--EESTSSS----CCHHHHHHHHHHHHHH-------SSSEEEEEEBHHHHSSTSHH---HHH-HHH--HTSTTE
T ss_pred ceEEEE--ecccccc----chhhHHHHHHHHHHhh-------cCCCEEEEECCCccccCCCH---HHH-HHH--hcCCcE
Confidence 999874 3344311 1234466777777765 78999997655 2332 233 333 222 13
Q ss_pred cEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehh
Q psy5880 210 DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 210 d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~ 289 (328)
-++-.++ +. +..+.++.+....++.|+ +| +-+.+...+..|++.+..+.
T Consensus 158 ~giK~s~---------------------~~------~~~~~~~~~~~~~~~~v~-~G---~d~~~~~~l~~G~~G~is~~ 206 (289)
T PF00701_consen 158 VGIKDSS---------------------GD------LERLIQLLRAVGPDFSVF-CG---DDELLLPALAAGADGFISGL 206 (289)
T ss_dssp EEEEESS---------------------SB------HHHHHHHHHHSSTTSEEE-ES---SGGGHHHHHHTTSSEEEESG
T ss_pred EEEEcCc---------------------hh------HHHHHHHhhhcccCeeee-cc---ccccccccccccCCEEEEcc
Confidence 3332111 10 123344444544445444 44 44457788899999999998
Q ss_pred HHhhcCchHHHHHHH
Q psy5880 290 SFVYHGPPLVTRIKS 304 (328)
Q Consensus 290 a~l~~gp~~~~~i~~ 304 (328)
+.++ |+++.++.+
T Consensus 207 ~n~~--P~~~~~i~~ 219 (289)
T PF00701_consen 207 ANVF--PELIVEIYD 219 (289)
T ss_dssp GGTH--HHHHHHHHH
T ss_pred cccC--hHHHHHHHH
Confidence 7653 555555443
No 377
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=95.14 E-value=0.089 Score=44.39 Aligned_cols=80 Identities=21% Similarity=0.156 Sum_probs=56.9
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.+++.+-|+=. ++...+....+.+ .+.+.|+|-+-.+ . -| +.++++.+.++
T Consensus 94 ~~~~aIqR~Fi-lDS~Al~~~~~~i--~~~~pD~iEvLPG------------------v-----~P---kvi~~i~~~t~ 144 (181)
T COG1954 94 LGILAIQRLFI-LDSIALEKGIKQI--EKSEPDFIEVLPG------------------V-----MP---KVIKEITEKTH 144 (181)
T ss_pred cCCceeeeeee-ecHHHHHHHHHHH--HHcCCCEEEEcCc------------------c-----cH---HHHHHHHHhcC
Confidence 35666666533 2333455666666 7788888854321 1 11 56788888887
Q ss_pred CCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 258 GKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 258 ~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
+|||+.|=|.+-||+.+++.+||-+|.-.
T Consensus 145 --~piIAGGLi~t~Eev~~Al~aGA~avSTs 173 (181)
T COG1954 145 --IPIIAGGLIETEEEVREALKAGAVAVSTS 173 (181)
T ss_pred --CCEEeccccccHHHHHHHHHhCcEEEeec
Confidence 99999999999999999999999887643
No 378
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=95.13 E-value=0.65 Score=41.10 Aligned_cols=174 Identities=20% Similarity=0.218 Sum_probs=94.7
Q ss_pred HHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHH
Q psy5880 44 FWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVL 123 (328)
Q Consensus 44 ~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~ 123 (328)
+-.+.++++.++.+.+.++...-- ....++++.+++.+ .|++. |+-... ......
T Consensus 12 ~a~~i~~~~~~~v~~iKvg~~l~~----------~~g~~~i~~l~~~~--------~~i~~----DlK~~D---Ig~tv~ 66 (216)
T cd04725 12 FALALIDALGPYVCAVKVGLELFE----------AAGPEIVKELRELG--------FLVFL----DLKLGD---IPNTVA 66 (216)
T ss_pred HHHHHHHhcCCcccEEEECHHHHH----------hcCHHHHHHHHHCC--------CcEEE----EeecCc---hHHHHH
Confidence 444556677777788877731111 01234444444432 24432 322211 123455
Q ss_pred HHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCh-----------
Q psy5880 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSL----------- 192 (328)
Q Consensus 124 ~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~----------- 192 (328)
.+++.+...+ +|++++|... |. +.+...++..++. + ..+=+.+.++. .+.
T Consensus 67 ~~~~~~~~~g--ad~~Tvh~~~----G~------~~l~~~~~~~~~~----~--~~~~~v~~lss-~~~~~~q~~~~~~~ 127 (216)
T cd04725 67 AAAEALLGLG--ADAVTVHPYG----GS------DMLKAALEAAEEK----G--KGLFAVTVLSS-PGALDLQEGIPGSL 127 (216)
T ss_pred HHHHHHHhcC--CCEEEECCcC----CH------HHHHHHHHHHhcc----C--CeEEEEEcCCC-CCHHHHHhhhcCCH
Confidence 5555555555 9999988652 11 2233333332211 0 22344556663 222
Q ss_pred -hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCC-
Q psy5880 193 -DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFS- 270 (328)
Q Consensus 193 -~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s- 270 (328)
+....+++.+ .++|++|++++.+.. +.+ ++....+.+ +.+.||+-
T Consensus 128 ~~~~~~~~~~a--~~~g~~G~V~~~~~~---------------------------~~i---~~~~~~~~~-~ltPGI~~~ 174 (216)
T cd04725 128 EDLVERLAKLA--REAGVDGVVCGATEP---------------------------EAL---RRALGPDFL-ILTPGIGAQ 174 (216)
T ss_pred HHHHHHHHHHH--HHHCCCEEEECCcch---------------------------HHH---HHhhCCCCe-EEcCCcCCC
Confidence 2245677777 888999987775421 122 233323354 88899884
Q ss_pred --------HHHHHHHHHhccCeeeehhHHhhc
Q psy5880 271 --------GKDAFEKIKAGASLVQIYTSFVYH 294 (328)
Q Consensus 271 --------~~da~~~l~~GAd~V~vg~a~l~~ 294 (328)
..+..+++..|++.+.+||+++..
T Consensus 175 ~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a 206 (216)
T cd04725 175 GSGDDQKRGGTPEDAIRAGADYIVVGRPITQA 206 (216)
T ss_pred CCccccccccCHHHHHHcCCcEEEEChhhccC
Confidence 235667778999999999999743
No 379
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.12 E-value=0.17 Score=46.24 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=74.5
Q ss_pred CCCCEEEEe---CCCC----ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHH
Q psy5880 178 PLPPILVKI---APDL----SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELIS 250 (328)
Q Consensus 178 ~~~Pv~vKl---~~~~----~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~ 250 (328)
.++||+.=+ +|.. +..+..++|+.. .++|+++|.+..-.. .+.| +++.++
T Consensus 48 ~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~--~~~GA~aisvlte~~---------------~f~g------~~~~l~ 104 (260)
T PRK00278 48 GKPAVIAEVKKASPSKGVIREDFDPVEIAKAY--EAGGAACLSVLTDER---------------FFQG------SLEYLR 104 (260)
T ss_pred CCCeEEEEeeCCCCCCCccCCCCCHHHHHHHH--HhCCCeEEEEecccc---------------cCCC------CHHHHH
Confidence 357887644 4431 223578999999 999999996643211 0112 257888
Q ss_pred HHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCC
Q psy5880 251 EMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYN 316 (328)
Q Consensus 251 ~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~ 316 (328)
.+++.++ +||+.--=|.++.++.++..+|||+|.+.-..+ . +.-+.++.+ .....|..
T Consensus 105 ~v~~~v~--iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l-~-~~~l~~li~----~a~~lGl~ 162 (260)
T PRK00278 105 AARAAVS--LPVLRKDFIIDPYQIYEARAAGADAILLIVAAL-D-DEQLKELLD----YAHSLGLD 162 (260)
T ss_pred HHHHhcC--CCEEeeeecCCHHHHHHHHHcCCCEEEEEeccC-C-HHHHHHHHH----HHHHcCCe
Confidence 8999887 999998889999999999999999999887764 3 444444433 33334555
No 380
>PLN02979 glycolate oxidase
Probab=95.11 E-value=0.17 Score=48.18 Aligned_cols=106 Identities=21% Similarity=0.228 Sum_probs=67.3
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCcc---ch----hhh-cc---ccccc----cC--------C
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVD---RY----EYL-DA---RYKEE----TG--------G 235 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~---~~----~~~-~~---~~~~~----~g--------g 235 (328)
+-|.+.++=..-+.+-..++++.+ +++|+.+++++--+.. +. +.. .| ..... .+ +
T Consensus 120 ~~~~wfQLY~~~Dr~~~~~ll~RA--~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 197 (366)
T PLN02979 120 PGIRFFQLYVYKNRNVVEQLVRRA--ERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSG 197 (366)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHH--HHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchh
Confidence 348899887665666678899999 9999999887532211 10 000 01 00000 00 0
Q ss_pred ----CCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehh
Q psy5880 236 ----LSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 236 ----~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~ 289 (328)
..+....+.+++.++.+++..+ +|||. .||.+++|+.+++++|+|+|.|+-
T Consensus 198 ~~~~~~~~~~~~ltW~dl~wlr~~~~--~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 198 LASYVAGQIDRTLSWKDVQWLQTITK--LPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHhccC--CCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 0000111245677888888887 89775 567899999999999999998863
No 381
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.05 E-value=0.31 Score=45.12 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGE 239 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~ 239 (328)
...+.++++++++.. ...|+.|=.. .+.++.+. .++|+|.|-+-|....
T Consensus 183 ~G~i~~ai~~~r~~~---~~~kIeVEv~------tl~ea~ea---l~~gaDiI~LDnm~~e------------------- 231 (289)
T PRK07896 183 AGSVVAALRAVRAAA---PDLPCEVEVD------SLEQLDEV---LAEGAELVLLDNFPVW------------------- 231 (289)
T ss_pred hCcHHHHHHHHHHhC---CCCCEEEEcC------CHHHHHHH---HHcCCCEEEeCCCCHH-------------------
Confidence 345566666665432 3355655542 24454444 4899999988774321
Q ss_pred cCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 240 PLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 240 ~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
.--+.+..+++. .+++.+.++||| |.+.+.++..+|+|.+.+|+...
T Consensus 232 ----~vk~av~~~~~~-~~~v~ieaSGGI-~~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 232 ----QTQEAVQRRDAR-APTVLLESSGGL-TLDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred ----HHHHHHHHHhcc-CCCEEEEEECCC-CHHHHHHHHhcCCCEEEeChhhc
Confidence 011233333333 346899999998 78999999999999999998764
No 382
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=95.03 E-value=0.59 Score=44.59 Aligned_cols=122 Identities=8% Similarity=0.025 Sum_probs=77.3
Q ss_pred HHHHHHHHHhc-ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFG-DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~-~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+++++.++++. .|+..+-+.++. +++.-.+.+++||+. ++ .++.+++--...++.++..++++.
T Consensus 140 e~~~~~a~~~~~~Gf~~~Kikvg~----------~~~~d~~~v~~vRe~---~G--~~~~l~vDaN~~~~~~~A~~~~~~ 204 (352)
T cd03328 140 DRLREQLSGWVAQGIPRVKMKIGR----------DPRRDPDRVAAARRA---IG--PDAELFVDANGAYSRKQALALARA 204 (352)
T ss_pred HHHHHHHHHHHHCCCCEEEeecCC----------CHHHHHHHHHHHHHH---cC--CCCeEEEECCCCCCHHHHHHHHHH
Confidence 33444444332 358888775541 123345666777765 34 578899998888888888999999
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHH--cCCCccEEEecCCCCHHHHHHHHH
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKL--TKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~--~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+ .+.++.++ . .|..+..++-.+++++. +. +||.+.=.+.+..|+.+++.
T Consensus 205 l--~~~~~~~~-------E------------------eP~~~~d~~~~~~l~~~~~~~--iPIa~gE~~~~~~~~~~li~ 255 (352)
T cd03328 205 F--ADEGVTWF-------E------------------EPVSSDDLAGLRLVRERGPAG--MDIAAGEYAYTLAYFRRLLE 255 (352)
T ss_pred H--HHhCcchh-------h------------------CCCChhhHHHHHHHHhhCCCC--CCEEecccccCHHHHHHHHH
Confidence 9 77766544 1 12223345556667776 54 77776666777777777777
Q ss_pred hc-cCeeeeh
Q psy5880 280 AG-ASLVQIY 288 (328)
Q Consensus 280 ~G-Ad~V~vg 288 (328)
.| +|.||+=
T Consensus 256 ~~a~div~~d 265 (352)
T cd03328 256 AHAVDVLQAD 265 (352)
T ss_pred cCCCCEEecC
Confidence 66 6776653
No 383
>TIGR03586 PseI pseudaminic acid synthase.
Probab=95.03 E-value=2 Score=40.65 Aligned_cols=115 Identities=12% Similarity=0.159 Sum_probs=74.6
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCcc-EEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVD-GLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT 256 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d-~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~ 256 (328)
.++||++|... .+.+++...++.+ .+.|.. .+.++. +..+| .+....+|..+..+++.+
T Consensus 133 ~gkPvilstG~-~t~~Ei~~Av~~i--~~~g~~~i~LlhC-~s~YP----------------~~~~~~nL~~i~~lk~~f 192 (327)
T TIGR03586 133 TGKPIIMSTGI-ATLEEIQEAVEAC--REAGCKDLVLLKC-TSSYP----------------APLEDANLRTIPDLAERF 192 (327)
T ss_pred cCCcEEEECCC-CCHHHHHHHHHHH--HHCCCCcEEEEec-CCCCC----------------CCcccCCHHHHHHHHHHh
Confidence 57899999887 4778899999999 888984 444454 22222 122335688899999988
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh--hc--------CchHHHHHHHHHHHHHHHhC
Q psy5880 257 KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV--YH--------GPPLVTRIKSELEELLQKEG 314 (328)
Q Consensus 257 ~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l--~~--------gp~~~~~i~~~l~~~m~~~g 314 (328)
+ +||..+.=-....-...++.+||+.+...--+= +. +|+-++++.+.++..-...|
T Consensus 193 ~--~pVG~SDHt~G~~~~~aAva~GA~iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg 258 (327)
T TIGR03586 193 N--VPVGLSDHTLGILAPVAAVALGACVIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALG 258 (327)
T ss_pred C--CCEEeeCCCCchHHHHHHHHcCCCEEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhC
Confidence 6 999666533333445567779999887663221 01 34557777777765444333
No 384
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=95.00 E-value=0.47 Score=44.94 Aligned_cols=139 Identities=17% Similarity=0.235 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChh-hHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLD-EKKDI 198 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~-~~~~~ 198 (328)
..-..++.++.+++ +-+-+++ ......+++...+. +.+|+.. .++|+++-+...-..+ ...++
T Consensus 70 ~in~~La~~a~~~g-----~~~~~Gs----~~~~~~~~~~~~~~-~~vr~~~------~~~p~i~nl~~~~~~~~~~~~~ 133 (333)
T TIGR02151 70 KINRNLARAARELG-----IPMGVGS----QRAALKDPETADTF-EVVREEA------PNGPLIANIGAPQLVEGGPEEA 133 (333)
T ss_pred HHHHHHHHHHHHcC-----CCeEEcC----chhhccChhhHhHH-HHHHHhC------CCCcEEeecCchhhccccHHHH
Confidence 34567777887776 1111221 11123345544444 5566531 6899999886431111 12334
Q ss_pred HHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEE--ecCCCCHHHHHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIG--VGGVFSGKDAFE 276 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia--~GGI~s~~da~~ 276 (328)
.+.. ...++|++.++-...+. . .... |...+...++.++.+++.++ +||+. +|.-.+.+++..
T Consensus 134 ~~~i--~~i~adal~i~ln~~q~--~------~~p~---g~~~f~~~le~i~~i~~~~~--vPVivK~~g~g~~~~~a~~ 198 (333)
T TIGR02151 134 QEAI--DMIEADALAIHLNVLQE--L------VQPE---GDRNFKGWLEKIAEICSQLS--VPVIVKEVGFGISKEVAKL 198 (333)
T ss_pred HHHH--HHhcCCCEEEcCccccc--c------cCCC---CCcCHHHHHHHHHHHHHhcC--CCEEEEecCCCCCHHHHHH
Confidence 4444 44456776654221110 0 0011 11122234588899999886 99986 555578999999
Q ss_pred HHHhccCeeeehh
Q psy5880 277 KIKAGASLVQIYT 289 (328)
Q Consensus 277 ~l~~GAd~V~vg~ 289 (328)
+.++|+|+|-++.
T Consensus 199 L~~aGvd~I~Vsg 211 (333)
T TIGR02151 199 LADAGVSAIDVAG 211 (333)
T ss_pred HHHcCCCEEEECC
Confidence 9999999999975
No 385
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=94.98 E-value=1.2 Score=40.27 Aligned_cols=133 Identities=15% Similarity=0.126 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEeCCC---C-Ch--------hhHHHHHHHhccccCCccEEEEecCCccchhhhccc
Q psy5880 161 KHLLKTVVETRNQLAVKPLPPILVKIAPD---L-SL--------DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDAR 228 (328)
Q Consensus 161 ~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~---~-~~--------~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~ 228 (328)
..+++.+-+.+.+ .++|+++-.-.+ . +. .-+.+..+.+ -+.|+|-+-+--..+
T Consensus 146 ~a~ierigsec~a----edi~f~lE~ltyd~~~~d~~eyak~kp~kV~~a~k~f--sd~GadvlKvevPvy--------- 210 (306)
T COG3684 146 LAYIERIGSECHA----EDLPFFLEPLTYDPRIGDKEEYAKRKPQKVIEAMKEF--SDSGADVLKVEVPVY--------- 210 (306)
T ss_pred HHHHHHHHHHhhh----cCCceeEeeeecCCCCCChHHHHhhchHHHHHHHHHh--ccCCCceEEeeccee---------
Confidence 3445555555432 789998865321 1 11 1233445555 567787764432111
Q ss_pred cccccCCCCCCcCchHHHHHHHHHHHHcCCCcc-EEEecCCCCH---HHHHHHHHhccCeeeehhHHhhcCchHHHHHHH
Q psy5880 229 YKEETGGLSGEPLRNKSTELISEMYKLTKGKLP-IIGVGGVFSG---KDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 229 ~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ip-via~GGI~s~---~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~ 304 (328)
..| .++.++....+...+.+ +| |+.+-||+.. +.+.-++++||+.|..||+.... .+..=..
T Consensus 211 -------veG--e~~ea~~~f~~~~~~~~--lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~GRAtWa~---~v~~g~d 276 (306)
T COG3684 211 -------VEG--EQEEAAAAFQRQNDHIN--LPWIYLSAGVSAKLFQRTVRFAMEAGASGVLAGRATWAG---VVEQGED 276 (306)
T ss_pred -------ccC--ccHHHHHHHHHhhcCCC--CCeEEEecCccHHHhHHHHHHHHHcCCceeEechhhhhc---ccccCcH
Confidence 112 24555566666555554 77 5688898763 45555677999999999998532 3332234
Q ss_pred HHHHHHHHhCCCCHHHHh
Q psy5880 305 ELEELLQKEGYNSVSQAV 322 (328)
Q Consensus 305 ~l~~~m~~~g~~si~e~~ 322 (328)
..++||.-.|+.+|+||-
T Consensus 277 ~~re~Lrt~g~~ni~eL~ 294 (306)
T COG3684 277 AAREWLRTVGFPNLDELN 294 (306)
T ss_pred HHHHHHHhhccccHHHHH
Confidence 457899999999999884
No 386
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=94.97 E-value=0.59 Score=44.86 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+.+.+.++...+ |++.+-+.++++... .-.+.+++||++. + .++.|++-....++.++...+++.
T Consensus 145 e~~~~~~~~~~~~G~~~~Klk~g~~~~~---------~d~~~v~avRe~~---g--~~~~l~iDan~~~~~~~A~~~~~~ 210 (372)
T COG4948 145 EMAAEAARALVELGFKALKLKVGVGDGD---------EDLERVRALREAV---G--DDVRLMVDANGGWTLEEAIRLARA 210 (372)
T ss_pred HHHHHHHHHHHhcCCceEEecCCCCchH---------HHHHHHHHHHHHh---C--CCceEEEeCCCCcCHHHHHHHHHH
Confidence 334444444442 599999888865431 3456677777763 3 478999999888998777889999
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+ .+.+..++- .|+.+..++..+++++.++ +||.+.=-+.+..|+.++++.|
T Consensus 211 l--~~~~l~~iE-------------------------eP~~~~d~~~~~~l~~~~~--~PIa~gEs~~~~~~~~~l~~~~ 261 (372)
T COG4948 211 L--EEYGLEWIE-------------------------EPLPPDDLEGLRELRAATS--TPIAAGESVYTRWDFRRLLEAG 261 (372)
T ss_pred h--cccCcceEE-------------------------CCCCccCHHHHHHHHhcCC--CCEecCcccccHHHHHHHHHcC
Confidence 8 777755551 1223334566677777665 8888888888888888888877
Q ss_pred -cCeeeeh
Q psy5880 282 -ASLVQIY 288 (328)
Q Consensus 282 -Ad~V~vg 288 (328)
+|.||+=
T Consensus 262 a~div~~d 269 (372)
T COG4948 262 AVDIVQPD 269 (372)
T ss_pred CCCeecCC
Confidence 7777763
No 387
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=94.96 E-value=0.3 Score=44.96 Aligned_cols=86 Identities=24% Similarity=0.372 Sum_probs=58.5
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+...++.+ .+.|++++.+.+++.... .++ ...-.+.++.+++.+++++||++.=|-.
T Consensus 18 iD~~~~~~~i~~l--~~~Gv~gl~v~GstGE~~------------~lt----~~Er~~l~~~~~~~~~~~~~vi~gv~~~ 79 (284)
T cd00950 18 VDFDALERLIEFQ--IENGTDGLVVCGTTGESP------------TLS----DEEHEAVIEAVVEAVNGRVPVIAGTGSN 79 (284)
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECCCCcchh------------hCC----HHHHHHHHHHHHHHhCCCCcEEeccCCc
Confidence 5666788999999 899999998877654311 011 1122456666777777778987544445
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhh
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVY 293 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~ 293 (328)
+.+++.+.. ++|||+|++....++
T Consensus 80 ~~~~~~~~a~~a~~~G~d~v~~~~P~~~ 107 (284)
T cd00950 80 NTAEAIELTKRAEKAGADAALVVTPYYN 107 (284)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcccccC
Confidence 666665543 489999999988754
No 388
>PLN02535 glycolate oxidase
Probab=94.91 E-value=0.27 Score=47.07 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=68.0
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCcc---ch-hhh----cccccccc-------CCCCCCc---
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVD---RY-EYL----DARYKEET-------GGLSGEP--- 240 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~---~~-~~~----~~~~~~~~-------gg~sg~~--- 240 (328)
+-|.+..+=..-+.+-..++++.+ +++|+.+|+++--+.. +. +.. .|...... .+..+..
T Consensus 123 ~~~~wfQlY~~~dr~~~~~ll~RA--~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 200 (364)
T PLN02535 123 NAVRFLQLYVYKRRDIAAQLVQRA--EKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEA 200 (364)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHH--HHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHH
Confidence 458999987766666788999999 9999999987633211 10 000 01000000 0000000
Q ss_pred ------CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 241 ------LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 241 ------~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
....+++.++.+++..+ .|||. .||.+++|+..+.++|+|+|.+.
T Consensus 201 ~~~~~~~~~~tW~~i~~lr~~~~--~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 201 FASETFDASLSWKDIEWLRSITN--LPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred HHHhccCCCCCHHHHHHHHhccC--CCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 11245678888888876 88665 68899999999999999999875
No 389
>KOG4201|consensus
Probab=94.90 E-value=0.12 Score=45.33 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc
Q psy5880 245 STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH 294 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~ 294 (328)
.+.....+.+.++.++-+++--||+|++|+..+-.+|..+|.||.++|..
T Consensus 223 DlstTskL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 223 DLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQ 272 (289)
T ss_pred chhhHHHHHhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhc
Confidence 35566677777777788999999999999999999999999999999854
No 390
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=94.89 E-value=0.93 Score=43.86 Aligned_cols=123 Identities=13% Similarity=0.102 Sum_probs=83.0
Q ss_pred HHHHHHHHHhc-ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFG-DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~-~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+++++.++++. .++..+-+.++-+ +.+.-.+.++++|+. ++ .++.+++-....++.++..++++.
T Consensus 162 ~~~~~~a~~~~~~Gf~~~Kikvg~~---------~~~~di~~v~avRe~---~G--~~~~l~vDaN~~w~~~~A~~~~~~ 227 (385)
T cd03326 162 GRLRDEMRRYLDRGYTVVKIKIGGA---------PLDEDLRRIEAALDV---LG--DGARLAVDANGRFDLETAIAYAKA 227 (385)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCC---------CHHHHHHHHHHHHHh---cC--CCCeEEEECCCCCCHHHHHHHHHH
Confidence 44444444433 3688888765411 122235666666665 34 578899998888888888899999
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+ .+.++.+|- . |..+..++..+++++.++ +||.+.=.+.+..++.+++..|
T Consensus 228 l--~~~~~~~iE-------e------------------P~~~~d~~~~~~L~~~~~--iPIa~gEs~~~~~~~~~li~~~ 278 (385)
T cd03326 228 L--APYGLRWYE-------E------------------PGDPLDYALQAELADHYD--GPIATGENLFSLQDARNLLRYG 278 (385)
T ss_pred h--hCcCCCEEE-------C------------------CCCccCHHHHHHHHhhCC--CCEEcCCCcCCHHHHHHHHHhC
Confidence 9 777776661 1 122223566677788776 8988877888999999999887
Q ss_pred c-----Ceeeeh
Q psy5880 282 A-----SLVQIY 288 (328)
Q Consensus 282 A-----d~V~vg 288 (328)
| |.||+=
T Consensus 279 a~~~~~div~~d 290 (385)
T cd03326 279 GMRPDRDVLQFD 290 (385)
T ss_pred CccccCCEEEeC
Confidence 4 787765
No 391
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=94.87 E-value=0.9 Score=42.92 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC----ChhhH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL----SLDEK 195 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~----~~~~~ 195 (328)
+.-.+++.++..++ +-+.+++ ......+++.. +-++.+|+.. .+.|+++-+.... +.
T Consensus 69 ~in~~La~~a~~~g-----~~~~~Gs----~~~~~~~~e~~-~~~~~vr~~~------~~~p~~~Nl~~~~~~~~~~--- 129 (326)
T cd02811 69 EINRNLAEAAEELG-----IAMGVGS----QRAALEDPELA-ESFTVVREAP------PNGPLIANLGAVQLNGYGV--- 129 (326)
T ss_pred HHHHHHHHHHHHcC-----CCeEecC----chhhccChhhh-hHHHHHHHhC------CCceEEeecCccccCCCCH---
Confidence 34577778877766 2222321 00112234433 4455555541 4589888776532 43
Q ss_pred HHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEE--ecCCCCHHH
Q psy5880 196 KDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIG--VGGVFSGKD 273 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia--~GGI~s~~d 273 (328)
.++.+.. ...++|++.++-...+. . .-..+...+...++.++.+++.++ +||+. +|--.+.++
T Consensus 130 ~~~~~~i--~~~~adalel~l~~~q~--~---------~~~~~~~df~~~~~~i~~l~~~~~--vPVivK~~g~g~s~~~ 194 (326)
T cd02811 130 EEARRAV--EMIEADALAIHLNPLQE--A---------VQPEGDRDFRGWLERIEELVKALS--VPVIVKEVGFGISRET 194 (326)
T ss_pred HHHHHHH--HhcCCCcEEEeCcchHh--h---------cCCCCCcCHHHHHHHHHHHHHhcC--CCEEEEecCCCCCHHH
Confidence 3444444 44567777665321110 0 001122222234577888888876 89987 455578999
Q ss_pred HHHHHHhccCeeeehh
Q psy5880 274 AFEKIKAGASLVQIYT 289 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~ 289 (328)
+..+.++|+|+|.++.
T Consensus 195 a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 195 AKRLADAGVKAIDVAG 210 (326)
T ss_pred HHHHHHcCCCEEEECC
Confidence 9999999999999853
No 392
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.83 E-value=0.75 Score=42.90 Aligned_cols=87 Identities=20% Similarity=0.249 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+...++++-....+ .|+|-++-+ | |.......+.-.++++.++++.. .++||++=.+.+.+. +..+++
T Consensus 25 ~a~~~lv~~li~~G--v~gi~~~Gt---t-GE~~~Ls~eEr~~v~~~~v~~~~-----grvpviaG~g~~~t~-eai~la 92 (299)
T COG0329 25 EALRRLVEFLIAAG--VDGLVVLGT---T-GESPTLTLEERKEVLEAVVEAVG-----GRVPVIAGVGSNSTA-EAIELA 92 (299)
T ss_pred HHHHHHHHHHHHcC--CCEEEECCC---C-ccchhcCHHHHHHHHHHHHHHHC-----CCCcEEEecCCCcHH-HHHHHH
Confidence 44555555555544 899986544 2 33222233445566666666642 578999988887554 678999
Q ss_pred HHhccccCCccEEEEecCCcc
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVD 220 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~ 220 (328)
+.+ ++.|+|++.+....+.
T Consensus 93 k~a--~~~Gad~il~v~PyY~ 111 (299)
T COG0329 93 KHA--EKLGADGILVVPPYYN 111 (299)
T ss_pred HHH--HhcCCCEEEEeCCCCc
Confidence 999 9999999998876654
No 393
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=94.79 E-value=1.1 Score=39.83 Aligned_cols=136 Identities=11% Similarity=0.095 Sum_probs=71.7
Q ss_pred HHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCC
Q psy5880 129 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCK 208 (328)
Q Consensus 129 a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G 208 (328)
+.+++ +|++.+|..++ .+.+.+.++++++ .+.-+.|-+-+..+.++ + +.. .+.|
T Consensus 76 ~~~~G--ad~vTvH~~a~----------~~~i~~~~~~~~~--------~g~~~~V~llts~~~~~---l-~~~--~~~~ 129 (216)
T PRK13306 76 AFEAG--ADWVTVICAAH----------IPTIKAALKVAKE--------FNGEIQIELYGNWTWEQ---A-QQW--RDAG 129 (216)
T ss_pred HHHCC--CCEEEEeCCCC----------HHHHHHHHHHHHH--------cCCEEEEEECCCCCHHH---H-HHH--HcCC
Confidence 44455 99999886531 1224445554443 23456666666555433 2 244 4566
Q ss_pred ccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 209 VDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 209 ~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
++-++++=+... ++.|-..-+..+..++++++ .+..+...|||+- +.+....+.|||.+.+|
T Consensus 130 ~~~~vl~~a~~~--------------~~~G~v~s~~~~~~ir~~~~---~~~~i~V~gGI~~-~~~~~~~~~~ad~~VvG 191 (216)
T PRK13306 130 ISQVIYHRSRDA--------------QLAGVAWGEKDLNKVKKLSD---MGFKVSVTGGLVV-EDLKLFKGIPVKTFIAG 191 (216)
T ss_pred hhhhhhhhhhhh--------------hhcCCCCCHHHHHHHHHHhc---CCCeEEEcCCCCH-hhHHHHhcCCCCEEEEC
Confidence 655544322110 01221112334455555543 3366899999974 33333455699999999
Q ss_pred hHHhhcCchHHHHHHHHHHHHH
Q psy5880 289 TSFVYHGPPLVTRIKSELEELL 310 (328)
Q Consensus 289 ~a~l~~gp~~~~~i~~~l~~~m 310 (328)
|++. +-++ ..+..+.+.+.+
T Consensus 192 r~I~-~a~d-p~~a~~~i~~~i 211 (216)
T PRK13306 192 RAIR-GAAD-PAAAARAFKDEI 211 (216)
T ss_pred Cccc-CCCC-HHHHHHHHHHHH
Confidence 9976 3354 333333444433
No 394
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.78 E-value=0.39 Score=44.39 Aligned_cols=87 Identities=20% Similarity=0.303 Sum_probs=59.9
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|++++.+.+++.... -++ ...-.+.++.+.+.+++++||++.=|=.
T Consensus 16 iD~~~~~~~i~~l--~~~Gv~Gi~~~GstGE~~------------~Ls----~~Er~~~~~~~~~~~~~~~~vi~gv~~~ 77 (285)
T TIGR00674 16 VDFAALEKLIDFQ--IENGTDAIVVVGTTGESP------------TLS----HEEHKKVIEFVVDLVNGRVPVIAGTGSN 77 (285)
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccCcccc------------cCC----HHHHHHHHHHHHHHhCCCCeEEEeCCCc
Confidence 5666788899999 899999998877654311 011 1122455666677777779998766656
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYH 294 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~ 294 (328)
+.+++.+.. .+|||+|++....++.
T Consensus 78 s~~~~i~~a~~a~~~Gad~v~v~pP~y~~ 106 (285)
T TIGR00674 78 ATEEAISLTKFAEDVGADGFLVVTPYYNK 106 (285)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCcCCC
Confidence 667766544 4799999999887643
No 395
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.78 E-value=0.37 Score=44.66 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=48.2
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
+.++.+. .++|+|.|-+-|-.. +.++++.+.+++++.+-++||| |.+.+
T Consensus 215 leea~eA---~~aGaDiImLDnmsp---------------------------e~l~~av~~~~~~~~lEaSGGI-t~~ni 263 (294)
T PRK06978 215 LAQLETA---LAHGAQSVLLDNFTL---------------------------DMMREAVRVTAGRAVLEVSGGV-NFDTV 263 (294)
T ss_pred HHHHHHH---HHcCCCEEEECCCCH---------------------------HHHHHHHHhhcCCeEEEEECCC-CHHHH
Confidence 4454444 589999998887432 2233333334445889999998 79999
Q ss_pred HHHHHhccCeeeehhHH
Q psy5880 275 FEKIKAGASLVQIYTSF 291 (328)
Q Consensus 275 ~~~l~~GAd~V~vg~a~ 291 (328)
.++..+|.|.+.+|...
T Consensus 264 ~~yA~tGVD~IS~galt 280 (294)
T PRK06978 264 RAFAETGVDRISIGALT 280 (294)
T ss_pred HHHHhcCCCEEEeCccc
Confidence 99999999999998765
No 396
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.77 E-value=0.11 Score=51.75 Aligned_cols=69 Identities=25% Similarity=0.313 Sum_probs=51.9
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..+.++.+ .++|++.|++-.+. + .+ ...++.++.+++..+ ++||++ |+|.|.+++
T Consensus 229 ~~e~a~~L--~~agvdvivvD~a~-g---------------~~-----~~vl~~i~~i~~~~p-~~~vi~-g~v~t~e~a 283 (486)
T PRK05567 229 NEERAEAL--VEAGVDVLVVDTAH-G---------------HS-----EGVLDRVREIKAKYP-DVQIIA-GNVATAEAA 283 (486)
T ss_pred hHHHHHHH--HHhCCCEEEEECCC-C---------------cc-----hhHHHHHHHHHhhCC-CCCEEE-eccCCHHHH
Confidence 35677888 89999987654321 1 00 123577888888873 388888 999999999
Q ss_pred HHHHHhccCeeeeh
Q psy5880 275 FEKIKAGASLVQIY 288 (328)
Q Consensus 275 ~~~l~~GAd~V~vg 288 (328)
..++++|||+|.+|
T Consensus 284 ~~l~~aGad~i~vg 297 (486)
T PRK05567 284 RALIEAGADAVKVG 297 (486)
T ss_pred HHHHHcCCCEEEEC
Confidence 99999999999775
No 397
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.72 E-value=0.14 Score=50.92 Aligned_cols=70 Identities=23% Similarity=0.349 Sum_probs=53.0
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..+.++.+ .++|++.|.+-.+.. . -...+++++++|+.++ +++|| .|.|.|.+.
T Consensus 227 ~~~~~a~~L--v~aGvd~i~~D~a~~----------------~-----~~~~~~~i~~ik~~~p-~~~v~-agnv~t~~~ 281 (479)
T PRK07807 227 DVAAKARAL--LEAGVDVLVVDTAHG----------------H-----QEKMLEALRAVRALDP-GVPIV-AGNVVTAEG 281 (479)
T ss_pred hHHHHHHHH--HHhCCCEEEEeccCC----------------c-----cHHHHHHHHHHHHHCC-CCeEE-eeccCCHHH
Confidence 456788888 899999987643211 1 1235788999999875 36555 489999999
Q ss_pred HHHHHHhccCeeeeh
Q psy5880 274 AFEKIKAGASLVQIY 288 (328)
Q Consensus 274 a~~~l~~GAd~V~vg 288 (328)
+..++.+|||+|-||
T Consensus 282 a~~l~~aGad~v~vg 296 (479)
T PRK07807 282 TRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHHHcCCCEEEEC
Confidence 999999999998744
No 398
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=94.70 E-value=0.61 Score=42.09 Aligned_cols=136 Identities=13% Similarity=0.166 Sum_probs=73.5
Q ss_pred cCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCC
Q psy5880 69 ANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNT 148 (328)
Q Consensus 69 ~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~ 148 (328)
.|+++.. .-.+++++..++...... ...|+.+-++-+- -. +.+.....++...+++ +++|.|
T Consensus 47 ~G~pD~~-~vtl~em~~~~~~I~r~~---~~~pviaD~~~G~----g~-~~~~~~~~~~~l~~aG--a~gv~i------- 108 (240)
T cd06556 47 AGYDDTL-PYPVNDVPYHVRAVRRGA---PLALIVADLPFGA----YG-APTAAFELAKTFMRAG--AAGVKI------- 108 (240)
T ss_pred cCCCCCC-CcCHHHHHHHHHHHHhhC---CCCCEEEeCCCCC----Cc-CHHHHHHHHHHHHHcC--CcEEEE-------
Confidence 3555432 223555555555444211 1257766555331 10 1123333344343444 787753
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC--------------CC---hhhHHHHHHHhccccCCccE
Q psy5880 149 ANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD--------------LS---LDEKKDIADVVLDSKCKVDG 211 (328)
Q Consensus 149 ~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~--------------~~---~~~~~~~a~~l~~~~~G~d~ 211 (328)
++ .....+.++++++ ..+||+.++... .+ .++..+-++.+ +++|+|.
T Consensus 109 ED------~~~~~~~i~ai~~--------a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay--~~AGAd~ 172 (240)
T cd06556 109 EG------GEWHIETLQMLTA--------AAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAY--APAGADL 172 (240)
T ss_pred cC------cHHHHHHHHHHHH--------cCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHH--HHcCCCE
Confidence 11 1123344455444 258999998652 11 23455556777 8999999
Q ss_pred EEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecC
Q psy5880 212 LIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGG 267 (328)
Q Consensus 212 i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GG 267 (328)
|.+.+. ..+.++++.+.++ +|++++|.
T Consensus 173 i~~e~~---------------------------~~e~~~~i~~~~~--~P~~~~ga 199 (240)
T cd06556 173 IVMECV---------------------------PVELAKQITEALA--IPLAGIGA 199 (240)
T ss_pred EEEcCC---------------------------CHHHHHHHHHhCC--CCEEEEec
Confidence 977542 1366788888887 99998654
No 399
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=94.70 E-value=0.34 Score=46.69 Aligned_cols=105 Identities=20% Similarity=0.103 Sum_probs=68.1
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCc--c-ch----hhhcccc-----------c-------ccc
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTV--D-RY----EYLDARY-----------K-------EET 233 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~--~-~~----~~~~~~~-----------~-------~~~ 233 (328)
+-|.++++-..-+.+...++++.+ +++|+.+|+++--.. + +. ....|.. . ...
T Consensus 137 ~~~~wfQlY~~~dr~~~~~ll~RA--~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 214 (383)
T cd03332 137 DAPRWFQLYWPKDDDLTESLLRRA--EKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPV 214 (383)
T ss_pred CCCcEEEeeCCCCHHHHHHHHHHH--HHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCC
Confidence 458899987766777788999999 999999998872111 0 00 0000100 0 000
Q ss_pred CC-CC----CC----------cCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 234 GG-LS----GE----------PLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 234 gg-~s----g~----------~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
.+ .. +. .....+++.++.+++..+ +|||.- ||.+.+|+..+++.|+|+|.|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~--~pvivK-gV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 215 GEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTD--LPIVLK-GILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcC--CCEEEe-cCCCHHHHHHHHHCCCCEEEEc
Confidence 00 00 00 001235678888998887 887765 8899999999999999999876
No 400
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=94.66 E-value=0.3 Score=46.49 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=66.8
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCcc---ch-hh----hccc---ccc------ccCC--CCCC
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVD---RY-EY----LDAR---YKE------ETGG--LSGE 239 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~---~~-~~----~~~~---~~~------~~gg--~sg~ 239 (328)
+.|+++=+-...+.+-..++.+.+ +++|+++|+++-.... +. +. ..|. ... ..++ +.+.
T Consensus 117 ~~~~w~Qly~~~d~~~~~~l~~ra--~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 194 (344)
T cd02922 117 DQPLFFQLYVNKDRTKTEELLKRA--EKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSG 194 (344)
T ss_pred CCcEEEEEeecCCHHHHHHHHHHH--HHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhh
Confidence 468887665544556678899999 9999999988633221 00 00 0110 000 0000 0000
Q ss_pred cC-chHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehh
Q psy5880 240 PL-RNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 240 ~~-~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~ 289 (328)
.. ....++.++.+++..+ +|||.- ||.+++|+..+.++|+|+|.+.-
T Consensus 195 ~~~~~~~~~~i~~l~~~~~--~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 195 FIDPTLTWDDIKWLRKHTK--LPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred ccCCCCCHHHHHHHHHhcC--CcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 00 1134677888888887 898877 78999999999999999998763
No 401
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.60 E-value=0.82 Score=42.47 Aligned_cols=126 Identities=13% Similarity=0.154 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC-ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCC-CC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDL-SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG-LS 237 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~-~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg-~s 237 (328)
+.+++..+++..+. .++||++.+-.++ +...+...++.+ .++|+.+|++=..... + ..| ..
T Consensus 63 ~~e~~~~~~~I~~~----~~iPviaD~d~GyG~~~~v~r~V~~~--~~aGaagi~IEDq~~p-------K----~cg~~~ 125 (292)
T PRK11320 63 LDDVLIDVRRITDA----CDLPLLVDIDTGFGGAFNIARTVKSM--IKAGAAAVHIEDQVGA-------K----RCGHRP 125 (292)
T ss_pred HHHHHHHHHHHHhc----cCCCEEEECCCCCCCHHHHHHHHHHH--HHcCCeEEEEecCCCc-------c----ccCCCC
Confidence 44555555554332 6899999998765 444567778999 9999999988543321 0 122 22
Q ss_pred CCcCchHHHHHHHHHHHHc----CCCccEEEecCC---CCHHHHH----HHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 238 GEPLRNKSTELISEMYKLT----KGKLPIIGVGGV---FSGKDAF----EKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 238 g~~~~~~~l~~v~~i~~~~----~~~ipvia~GGI---~s~~da~----~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
|..+.|.. +++.+|+... +.++-|++=-.. ...+++. .+.++|||+|.+-.. +.++.++++.+.+
T Consensus 126 ~~~lv~~e-e~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~---~~~~~i~~~~~~~ 201 (292)
T PRK11320 126 NKEIVSQE-EMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAM---TELEMYRRFADAV 201 (292)
T ss_pred CCcccCHH-HHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCC---CCHHHHHHHHHhc
Confidence 43333332 4444444332 222444443222 1245554 355689999998652 3577777777654
No 402
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.51 E-value=1.4 Score=41.92 Aligned_cols=70 Identities=14% Similarity=0.050 Sum_probs=46.9
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGL 212 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i 212 (328)
++..+-+.++.+... .....+++.-.+.++++++. ++ .++.|.+.-...++.++..++++.+ .+.|+.+|
T Consensus 138 Gf~~~KiKvg~~~~~-~~~~~~~~~D~~~i~avr~~---~g--~~~~l~vDaN~~~~~~~A~~~~~~l--~~~~i~~i 207 (352)
T cd03325 138 GFTAVKMNATEELQW-IDTSKKVDAAVERVAALREA---VG--PDIDIGVDFHGRVSKPMAKDLAKEL--EPYRLLFI 207 (352)
T ss_pred CCCEEEecCCCCccc-CCCHHHHHHHHHHHHHHHHh---hC--CCCEEEEECCCCCCHHHHHHHHHhc--cccCCcEE
Confidence 588888877632210 00112334456677777765 33 5778999888888888888999999 78887776
No 403
>KOG0399|consensus
Probab=94.50 E-value=0.2 Score=53.71 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=54.5
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh---------------------hcCc--------------hHHHH
Q psy5880 257 KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV---------------------YHGP--------------PLVTR 301 (328)
Q Consensus 257 ~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l---------------------~~gp--------------~~~~~ 301 (328)
.+++-+=.-|+++|+.|+.-+-..||+-..++|+-| .++| .++--
T Consensus 1167 R~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~PehvVNff~y 1246 (2142)
T KOG0399|consen 1167 RGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHVVNFFFY 1246 (2142)
T ss_pred cccEEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHHHHHHHHH
Confidence 345677789999999999988889998877776433 1233 24566
Q ss_pred HHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 302 IKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 302 i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
+.++++..|.+.||.+++|++|..
T Consensus 1247 vaEEvR~imakLGfrtldemvGrt 1270 (2142)
T KOG0399|consen 1247 VAEEVRGIMAKLGFRTLDEMVGRT 1270 (2142)
T ss_pred HHHHHHHHHHHhCcchHHHHhcch
Confidence 778999999999999999999964
No 404
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=94.47 E-value=0.9 Score=41.98 Aligned_cols=165 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhh
Q psy5880 115 KKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDE 194 (328)
Q Consensus 115 n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~ 194 (328)
|....+.+..++++|++.. .-+.|+++ ++.......+.+..++..+.+. .++||.+-+-.+.+
T Consensus 22 N~~n~e~~~avi~AAee~~---sPvIlq~s----~~~~~~~~~~~~~~~~~~~a~~-------~~VPValHLDHg~~--- 84 (282)
T TIGR01858 22 NIHNLETIQAVVETAAEMR---SPVILAGT----PGTFKHAGTEYIVALCSAASTT-------YNMPLALHLDHHES--- 84 (282)
T ss_pred EeCCHHHHHHHHHHHHHhC---CCEEEEeC----ccHHhhCCHHHHHHHHHHHHHH-------CCCCEEEECCCCCC---
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC-----CccEEEecC--
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG-----KLPIIGVGG-- 267 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~-----~ipvia~GG-- 267 (328)
.+.++.+ .++|++.|.+-+.... ...+++..+++.+.... +-.|=.+||
T Consensus 85 -~e~i~~a--i~~GFtSVM~DgS~lp---------------------~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e 140 (282)
T TIGR01858 85 -LDDIRQK--VHAGVRSAMIDGSHFP---------------------FAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVE 140 (282)
T ss_pred -HHHHHHH--HHcCCCEEeecCCCCC---------------------HHHHHHHHHHHHHHHHHcCCeEEEEEEecCCcc
Q ss_pred -----------CCCHHHHHHHHH-hccCeeeehhHHhhc--------CchHHHHHHHHHHHHHHHhCCCCHHH
Q psy5880 268 -----------VFSGKDAFEKIK-AGASLVQIYTSFVYH--------GPPLVTRIKSELEELLQKEGYNSVSQ 320 (328)
Q Consensus 268 -----------I~s~~da~~~l~-~GAd~V~vg~a~l~~--------gp~~~~~i~~~l~~~m~~~g~~si~e 320 (328)
.++|+++.++++ +|+|+..++-+-... +.+.+++|.+.+.-=|-.||-+.+.+
T Consensus 141 ~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~ 213 (282)
T TIGR01858 141 DDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPD 213 (282)
T ss_pred CCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCH
No 405
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=94.41 E-value=0.43 Score=45.75 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=65.4
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCc--c-ch-h---h-hccc-c-------ccccCC-C---CC
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTV--D-RY-E---Y-LDAR-Y-------KEETGG-L---SG 238 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~--~-~~-~---~-~~~~-~-------~~~~gg-~---sg 238 (328)
+-|.+.=+-..-+.+-..++++++ +++|+.+|+++--.. + +. + . ..|. . ....+. . .+
T Consensus 132 ~~~~wfQlY~~~dr~~~~~li~RA--~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 209 (367)
T TIGR02708 132 GTPHWFQFYMSKDDGINRDIMDRV--KADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYK 209 (367)
T ss_pred CCceEEEEeccCCHHHHHHHHHHH--HHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhcc
Confidence 347777765554554567899999 999999998763221 1 10 0 0 0010 0 000000 0 00
Q ss_pred CcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 239 EPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 239 ~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
.......++.++.+++..+ +||+.= ||.+++|+..+.++|+|+|.|+
T Consensus 210 ~~~~~~~w~~i~~l~~~~~--~PvivK-Gv~~~eda~~a~~~Gvd~I~VS 256 (367)
T TIGR02708 210 SAKQKLSPRDIEEIAGYSG--LPVYVK-GPQCPEDADRALKAGASGIWVT 256 (367)
T ss_pred ccCCCCCHHHHHHHHHhcC--CCEEEe-CCCCHHHHHHHHHcCcCEEEEC
Confidence 0111234677888988887 899855 7999999999999999988765
No 406
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=94.41 E-value=1.2 Score=43.32 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEE
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGL 212 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i 212 (328)
..+.+++||+. ++ .++.|.+-....++.++..++++.+ .+.++.+|
T Consensus 192 ~~~~v~avre~---~G--~~~~l~vDaN~~w~~~~A~~~~~~l--~~~~l~~i 237 (404)
T PRK15072 192 VPKLFEAVRNK---FG--FDLHLLHDVHHRLTPIEAARLGKSL--EPYRLFWL 237 (404)
T ss_pred HHHHHHHHHhh---hC--CCceEEEECCCCCCHHHHHHHHHhc--cccCCcEE
Confidence 45667776665 33 5678999888888988888999999 77777666
No 407
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=94.31 E-value=1.4 Score=41.80 Aligned_cols=127 Identities=12% Similarity=0.088 Sum_probs=75.4
Q ss_pred HHHHHHHHHhc-ccccEEEEccCC-CCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 123 LDSVKGILKFG-DVAHYFVVNVSS-PNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 123 ~~~~~~a~~~~-~~~d~ieiN~sc-Pn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
+++++.++++. .++..+-+.++. |+. + ..+.+.-.+.+++||+. ++ .++.|.+-....++.++..++++
T Consensus 122 ~~~~~~a~~~~~~Gf~~~Kikvg~~~~~-~---~~~~~~d~~~v~avr~~---~g--~~~~l~vDan~~~~~~~A~~~~~ 192 (341)
T cd03327 122 DELPDEAKEYLKEGYRGMKMRFGYGPSD-G---HAGLRKNVELVRAIREA---VG--YDVDLMLDCYMSWNLNYAIKMAR 192 (341)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCc-c---hHHHHHHHHHHHHHHHH---hC--CCCcEEEECCCCCCHHHHHHHHH
Confidence 44444444443 368888877642 221 0 11234456667777766 34 57889998887788888888999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.++.++- . |..+..++..+++++..+ +||.+.=.+.+..++.++++.
T Consensus 193 ~l--~~~~~~~iE-------e------------------P~~~~d~~~~~~l~~~~~--~pIa~gE~~~~~~~~~~~i~~ 243 (341)
T cd03327 193 AL--EKYELRWIE-------E------------------PLIPDDIEGYAELKKATG--IPISTGEHEYTVYGFKRLLEG 243 (341)
T ss_pred Hh--hhcCCcccc-------C------------------CCCccCHHHHHHHHhcCC--CCeEeccCccCHHHHHHHHHc
Confidence 98 777665441 1 111222344555666655 666665556667777777665
Q ss_pred c-cCeeee
Q psy5880 281 G-ASLVQI 287 (328)
Q Consensus 281 G-Ad~V~v 287 (328)
| +|.|++
T Consensus 244 ~a~d~i~~ 251 (341)
T cd03327 244 RAVDILQP 251 (341)
T ss_pred CCCCEEec
Confidence 4 666654
No 408
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.30 E-value=0.51 Score=43.71 Aligned_cols=86 Identities=27% Similarity=0.385 Sum_probs=57.6
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|++++.+.+++.... -++ ...-.+.++.+.+.+++++||++.=|-.
T Consensus 19 iD~~~l~~~i~~l--~~~Gv~gi~~~Gs~GE~~------------~ls----~~Er~~~~~~~~~~~~~~~~vi~gv~~~ 80 (292)
T PRK03170 19 VDFAALRKLVDYL--IANGTDGLVVVGTTGESP------------TLT----HEEHEELIRAVVEAVNGRVPVIAGTGSN 80 (292)
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECCcCCccc------------cCC----HHHHHHHHHHHHHHhCCCCcEEeecCCc
Confidence 5666788999999 899999998876654311 011 0122455666677777779987544445
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhh
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVY 293 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~ 293 (328)
+.+++.+.. ++|||+|++....++
T Consensus 81 ~~~~~i~~a~~a~~~G~d~v~~~pP~~~ 108 (292)
T PRK03170 81 STAEAIELTKFAEKAGADGALVVTPYYN 108 (292)
T ss_pred hHHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence 566665544 479999999887753
No 409
>PRK14017 galactonate dehydratase; Provisional
Probab=94.28 E-value=1.6 Score=42.16 Aligned_cols=131 Identities=17% Similarity=0.092 Sum_probs=77.4
Q ss_pred HHHHHHHHHhc-ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFG-DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~-~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+++++.++++. .++..+-+.+.-+... .....+.+.-.+.++++|+. ++ .++.|.+.-...++.++..++++.
T Consensus 126 ~~~~~~a~~~~~~Gf~~~KiKv~~~~~~-~~~~~~~~~d~~~i~avr~~---~g--~~~~l~vDaN~~w~~~~A~~~~~~ 199 (382)
T PRK14017 126 ADVAEAARARVERGFTAVKMNGTEELQY-IDSPRKVDAAVARVAAVREA---VG--PEIGIGVDFHGRVHKPMAKVLAKE 199 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcCCccc-cccHHHHHHHHHHHHHHHHH---hC--CCCeEEEECCCCCCHHHHHHHHHh
Confidence 33444444332 2588887765311100 00011234456667777765 33 567899988888888888899999
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+ .+.|+.+|- . |+.+..++..+++++..+ +||.+.=.+.+..++.++++.|
T Consensus 200 l--~~~~~~~iE-------e------------------P~~~~d~~~~~~L~~~~~--~pIa~dEs~~~~~~~~~li~~~ 250 (382)
T PRK14017 200 L--EPYRPMFIE-------E------------------PVLPENAEALPEIAAQTS--IPIATGERLFSRWDFKRVLEAG 250 (382)
T ss_pred h--cccCCCeEE-------C------------------CCCcCCHHHHHHHHhcCC--CCEEeCCccCCHHHHHHHHHcC
Confidence 9 788877662 1 111122344556666655 7777666677777777777765
Q ss_pred -cCeeeeh
Q psy5880 282 -ASLVQIY 288 (328)
Q Consensus 282 -Ad~V~vg 288 (328)
+|.|++-
T Consensus 251 a~d~v~~d 258 (382)
T PRK14017 251 GVDIIQPD 258 (382)
T ss_pred CCCeEecC
Confidence 6666643
No 410
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=94.26 E-value=0.46 Score=45.54 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=67.0
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCcc---ch-h---hh-cc-c--cccc----cCCCC------
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVD---RY-E---YL-DA-R--YKEE----TGGLS------ 237 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~---~~-~---~~-~~-~--~~~~----~gg~s------ 237 (328)
+-|.+..+=..-+.+...++.+.+ +++|+.+++++--+.. +. + .. .| . .... .+...
T Consensus 121 ~~~~wfQlY~~~Dr~~~~~li~RA--~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 198 (367)
T PLN02493 121 PGIRFFQLYVYKNRNVVEQLVRRA--ERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSG 198 (367)
T ss_pred CCCcEEEEeecCCHHHHHHHHHHH--HHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchh
Confidence 347888886665666788999999 9999999887532211 10 0 00 01 0 0000 00000
Q ss_pred ------CCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehh
Q psy5880 238 ------GEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 238 ------g~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~ 289 (328)
+......+++.++.+++..+ +|||. .||.+++|+.+++++|+|+|.|.-
T Consensus 199 ~~~~~~~~~~~~~tW~di~wlr~~~~--~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 199 LASYVAGQIDRTLSWKDVQWLQTITK--LPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHhccC--CCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 00011234677888888877 89765 577899999999999999998863
No 411
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=94.26 E-value=0.55 Score=43.25 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=53.4
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG 258 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~ 258 (328)
..+|.|=+. + +.+. +.+ .++|+|.|.+.|.... .-.+.++.+++. ..
T Consensus 188 ~~kIeVEv~---t---leea-~ea--~~~GaDiI~lDn~~~e-----------------------~l~~~v~~l~~~-~~ 234 (277)
T TIGR01334 188 ERKITVEAD---T---IEQA-LTV--LQASPDILQLDKFTPQ-----------------------QLHHLHERLKFF-DH 234 (277)
T ss_pred CCCEEEECC---C---HHHH-HHH--HHcCcCEEEECCCCHH-----------------------HHHHHHHHHhcc-CC
Confidence 455666553 2 3444 334 5899999988874322 112334444432 34
Q ss_pred CccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 259 KLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 259 ~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
++.+.++||| +.+.+.++..+|+|.+.+|...
T Consensus 235 ~~~leasGGI-~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 235 IPTLAAAGGI-NPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred CEEEEEECCC-CHHHHHHHHhcCCCEEEeCcce
Confidence 5889999998 7999999999999999888753
No 412
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=94.23 E-value=2.1 Score=42.35 Aligned_cols=134 Identities=19% Similarity=0.231 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
++.+..|++.+.+.+ .|.+-+ +.+.| +.+.+...++++++. +.....-+..-.+|..+.+-+.++
T Consensus 104 ddvv~~fv~~a~~~G--idi~Ri-fd~ln--------d~~n~~~ai~~ak~~----G~~~~~~i~yt~sp~~t~~y~~~~ 168 (468)
T PRK12581 104 DDIVDKFISLSAQNG--IDVFRI-FDALN--------DPRNIQQALRAVKKT----GKEAQLCIAYTTSPVHTLNYYLSL 168 (468)
T ss_pred chHHHHHHHHHHHCC--CCEEEE-cccCC--------CHHHHHHHHHHHHHc----CCEEEEEEEEEeCCcCcHHHHHHH
Confidence 467888888877766 777764 33333 344566667776664 211223455566777777778899
Q ss_pred HHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH---HHHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG---KDAF 275 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~---~da~ 275 (328)
++.+ .++|+|.|.+..+.. +.-| ....+.++.+++..+ +||-.-+==+.+ .-..
T Consensus 169 a~~l--~~~Gad~I~IkDtaG----------------~l~P---~~v~~Lv~alk~~~~--~pi~~H~Hnt~GlA~An~l 225 (468)
T PRK12581 169 VKEL--VEMGADSICIKDMAG----------------ILTP---KAAKELVSGIKAMTN--LPLIVHTHATSGISQMTYL 225 (468)
T ss_pred HHHH--HHcCCCEEEECCCCC----------------CcCH---HHHHHHHHHHHhccC--CeEEEEeCCCCccHHHHHH
Confidence 9999 999999998776532 1111 123467777777554 777554433333 3345
Q ss_pred HHHHhccCeeeehhH
Q psy5880 276 EKIKAGASLVQIYTS 290 (328)
Q Consensus 276 ~~l~~GAd~V~vg~a 290 (328)
+++++||+.|-.+-.
T Consensus 226 aAieAGad~vD~ai~ 240 (468)
T PRK12581 226 AAVEAGADRIDTALS 240 (468)
T ss_pred HHHHcCCCEEEeecc
Confidence 567799998876643
No 413
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=94.21 E-value=0.83 Score=49.39 Aligned_cols=72 Identities=26% Similarity=0.330 Sum_probs=54.6
Q ss_pred CCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcC-chHHHHHHHHHHH
Q psy5880 236 LSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHG-PPLVTRIKSELEE 308 (328)
Q Consensus 236 ~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~g-p~~~~~i~~~l~~ 308 (328)
+||.+++|.++....++.+.++++.||.++||- +.-.+.+....|-+-|-+++.+|..+ ..-...+.+.|+.
T Consensus 324 msg~~l~pl~i~~a~~l~~~f~g~l~is~~~g~-~~~~~~~~~~~gi~pv~~a~~~lk~~~~~~~~~l~~~l~~ 396 (1019)
T PRK09853 324 MSGRALFPLSINLAAKLSREFDGKLPISYSGGA-DQFNIRDIFDTGIRPITMATTLLKPGGYLRLTQCARELEG 396 (1019)
T ss_pred ccCCcccceeHHHHHhhHHhhCCCCceeEEecc-ceeehhhccCCCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 799999999999999999999889999999994 45556667788988899999887432 1223444444444
No 414
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.21 E-value=1.4 Score=43.10 Aligned_cols=72 Identities=8% Similarity=0.003 Sum_probs=47.8
Q ss_pred HHHHHHHHhc-ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 124 DSVKGILKFG-DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 124 ~~~~~a~~~~-~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
++++.++++. .++..+-+.++. +.+.-.+.++++|+. ++ .++.|.+.....++.++..++++.+
T Consensus 199 ~~~~~a~~~~~~Gf~~~KiKvg~----------~~~~d~~~v~avRe~---vG--~~~~L~vDaN~~w~~~~A~~~~~~L 263 (415)
T cd03324 199 KLRRLCKEALAQGFTHFKLKVGA----------DLEDDIRRCRLAREV---IG--PDNKLMIDANQRWDVPEAIEWVKQL 263 (415)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCC----------CHHHHHHHHHHHHHh---cC--CCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3444444332 258888776541 123345566677665 44 5788898888778888899999999
Q ss_pred ccccCCccEE
Q psy5880 203 LDSKCKVDGL 212 (328)
Q Consensus 203 ~~~~~G~d~i 212 (328)
.+.++.++
T Consensus 264 --~~~~l~~i 271 (415)
T cd03324 264 --AEFKPWWI 271 (415)
T ss_pred --hccCCCEE
Confidence 88887765
No 415
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=94.19 E-value=0.31 Score=44.35 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=58.0
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..++++.. .++|+++|.+-.-..- + .-+++.+..+++.++ +||..-==|-++.+
T Consensus 69 d~~~~a~~y--~~~GA~aiSVlTe~~~---------------F------~Gs~~dL~~v~~~~~--~PvL~KDFIid~~Q 123 (254)
T PF00218_consen 69 DPAEIAKAY--EEAGAAAISVLTEPKF---------------F------GGSLEDLRAVRKAVD--LPVLRKDFIIDPYQ 123 (254)
T ss_dssp SHHHHHHHH--HHTT-SEEEEE--SCC---------------C------HHHHHHHHHHHHHSS--S-EEEES---SHHH
T ss_pred CHHHHHHHH--HhcCCCEEEEECCCCC---------------C------CCCHHHHHHHHHHhC--CCcccccCCCCHHH
Confidence 578899999 9999999977532110 1 125788999999987 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i 302 (328)
+.++..+|||+|.+=.+++- +..+..+
T Consensus 124 I~eA~~~GADaVLLI~~~L~--~~~l~~l 150 (254)
T PF00218_consen 124 IYEARAAGADAVLLIAAILS--DDQLEEL 150 (254)
T ss_dssp HHHHHHTT-SEEEEEGGGSG--HHHHHHH
T ss_pred HHHHHHcCCCEeehhHHhCC--HHHHHHH
Confidence 99999999999998888762 4444443
No 416
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=94.11 E-value=1.6 Score=41.44 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=77.1
Q ss_pred HHHhHHHHHHHhhcC-ccceEEeccC---------CCCC------cCccCCCc-hHHHHHHHHHHHHHhhhhcCCCCCcc
Q psy5880 40 WVLQFWLLGILKFGD-VAHYFVVNVS---------SPNT------ANLRKLQA-KDQLKHLLKTVVETRNQLALKPLPPI 102 (328)
Q Consensus 40 ~~l~~y~~~~~~l~~-~~~~v~~n~s---------spN~------~gl~~~~~-~~~L~~ll~~v~~~~~~~~~~~~~Pv 102 (328)
.++++|...++.+.. -.|.|++|.. ||.+ .|- ++.+ ..-+.+++++|++.- + ...|+
T Consensus 138 ~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~v---g--~~~~v 211 (343)
T cd04734 138 EIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGG-SLENRMRFLLEVLAAVRAAV---G--PDFIV 211 (343)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCC-CHHHHhHHHHHHHHHHHHHc---C--CCCeE
Confidence 677889887776433 2488999963 6633 121 2222 233556666666553 1 22456
Q ss_pred hhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCc---c--hhhhhh-hHHHHHHHHHHHHHHHhhcC
Q psy5880 103 LVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTA---N--LRKLQA-KDQLKHLLKTVVETRNQLAV 176 (328)
Q Consensus 103 ~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~---g--~~~~~~-~~~~~~i~~~v~~~~~~~~~ 176 (328)
.+++.++-.+ ....+.++..++++.+++++ ++|+|++....-... . ...... +....++++.+++.
T Consensus 212 ~iRl~~~~~~-~~G~~~~e~~~~~~~l~~~G-~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~------ 283 (343)
T cd04734 212 GIRISGDEDT-EGGLSPDEALEIAARLAAEG-LIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQA------ 283 (343)
T ss_pred EEEeehhhcc-CCCCCHHHHHHHHHHHHhcC-CCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHH------
Confidence 6666543111 11112233344444444432 279998743221110 0 000111 12335667777766
Q ss_pred CCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 177 KPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 177 ~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.++||++= .++.. ...+.+.+ .+-++|+|.+.
T Consensus 284 -~~ipvi~~--G~i~~--~~~~~~~l--~~~~~D~V~~g 315 (343)
T cd04734 284 -VDLPVFHA--GRIRD--PAEAEQAL--AAGHADMVGMT 315 (343)
T ss_pred -cCCCEEee--CCCCC--HHHHHHHH--HcCCCCeeeec
Confidence 67898873 33321 33444445 55669988554
No 417
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=94.06 E-value=1.3 Score=41.85 Aligned_cols=159 Identities=10% Similarity=0.080 Sum_probs=79.6
Q ss_pred hhHHHHHHHhHHHHHHHhhcC-ccceEEeccCC---------C--CC--c--CccCCCchHHHHHHHHHHHHHhhhhcCC
Q psy5880 34 FARMRAWVLQFWLLGILKFGD-VAHYFVVNVSS---------P--NT--A--NLRKLQAKDQLKHLLKTVVETRNQLALK 97 (328)
Q Consensus 34 ~~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~ss---------p--N~--~--gl~~~~~~~~L~~ll~~v~~~~~~~~~~ 97 (328)
.+.+ ..++++|...++.+.. -.|.|++|..+ | |. . |-.-.....-+.+++++|++.. +
T Consensus 146 ~~eI-~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~v---G-- 219 (336)
T cd02932 146 REEI-AEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVW---P-- 219 (336)
T ss_pred HHHH-HHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHc---C--
Confidence 3344 4688899998886533 35889998643 3 32 1 2111113333556666666553 1
Q ss_pred CCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCC
Q psy5880 98 PLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVK 177 (328)
Q Consensus 98 ~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~ 177 (328)
...|+.+|+.+.-.. ....+.++..++++.++.++ .|+|++............. .+....+..+.|++.
T Consensus 220 ~d~~v~vri~~~~~~-~~g~~~~e~~~ia~~Le~~g--vd~iev~~g~~~~~~~~~~-~~~~~~~~~~~ir~~------- 288 (336)
T cd02932 220 EDKPLFVRISATDWV-EGGWDLEDSVELAKALKELG--VDLIDVSSGGNSPAQKIPV-GPGYQVPFAERIRQE------- 288 (336)
T ss_pred CCceEEEEEcccccC-CCCCCHHHHHHHHHHHHHcC--CCEEEECCCCCCcccccCC-CccccHHHHHHHHhh-------
Confidence 245888887752100 00012334445555555544 8999976442111000000 011223555666665
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.++||+.= .++.. ..++.+.+ .+..+|+|.+.
T Consensus 289 ~~iPVi~~--G~i~t--~~~a~~~l--~~g~aD~V~~g 320 (336)
T cd02932 289 AGIPVIAV--GLITD--PEQAEAIL--ESGRADLVALG 320 (336)
T ss_pred CCCCEEEe--CCCCC--HHHHHHHH--HcCCCCeehhh
Confidence 67898853 33321 23444444 33448887543
No 418
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=94.03 E-value=0.64 Score=43.36 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=46.1
Q ss_pred CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeee
Q psy5880 207 CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286 (328)
Q Consensus 207 ~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~ 286 (328)
+|+|.|-+-|-... | ... ..+.+.+++..+.++++.++-++||| |.+.+.++..+|+|.+.
T Consensus 228 agaDiImLDnm~~~-~----------------~~~-~~~~e~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~Is 288 (308)
T PLN02716 228 TSLTRVMLDNMVVP-L----------------ENG-DVDVSMLKEAVELINGRFETEASGNV-TLDTVHKIGQTGVTYIS 288 (308)
T ss_pred CCCCEEEeCCCccc-c----------------ccc-CCCHHHHHHHHHhhCCCceEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 99999988875211 0 000 01124455544455556899999998 68999999999999999
Q ss_pred ehhHH
Q psy5880 287 IYTSF 291 (328)
Q Consensus 287 vg~a~ 291 (328)
+|...
T Consensus 289 ~Galt 293 (308)
T PLN02716 289 SGALT 293 (308)
T ss_pred eCccc
Confidence 98765
No 419
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=94.00 E-value=0.27 Score=44.88 Aligned_cols=94 Identities=17% Similarity=0.259 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCC
Q psy5880 159 QLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG 238 (328)
Q Consensus 159 ~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg 238 (328)
....+-++|++++. ..|...|+--..+. +.++-++ .++|+|.|.+-|-..
T Consensus 170 ~~g~i~~Av~~aR~------~~~~~~kIEVEves--le~~~eA---l~agaDiImLDNm~~------------------- 219 (280)
T COG0157 170 AAGSITEAVRRARA------AAPFTKKIEVEVES--LEEAEEA---LEAGADIIMLDNMSP------------------- 219 (280)
T ss_pred HhccHHHHHHHHHH------hCCCCceEEEEcCC--HHHHHHH---HHcCCCEEEecCCCH-------------------
Confidence 44457777777763 35666677654432 5555444 489999998887432
Q ss_pred CcCchHHHHHHHHHHHH--cCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 239 EPLRNKSTELISEMYKL--TKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 239 ~~~~~~~l~~v~~i~~~--~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
+.++++.+. ..+++-+=++||| |.+.+.++...|.|.+.+|...
T Consensus 220 --------e~~~~av~~l~~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~galt 265 (280)
T COG0157 220 --------EELKEAVKLLGLAGRALLEASGGI-TLENIREYAETGVDVISVGALT 265 (280)
T ss_pred --------HHHHHHHHHhccCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeCccc
Confidence 223333232 4445778899998 7899999999999999988765
No 420
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=93.96 E-value=2.6 Score=42.12 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
++.+..|++.+...+ .|.+-| ++|-. +.+.+...+++++++-. ....-|..-+++-.+.+.+.++
T Consensus 96 ddvv~~fv~~a~~~G--idi~RI--fd~ln-------dv~nl~~ai~~vk~ag~----~~~~~i~yt~sp~~t~e~~~~~ 160 (499)
T PRK12330 96 DEVVDRFVEKSAENG--MDVFRV--FDALN-------DPRNLEHAMKAVKKVGK----HAQGTICYTVSPIHTVEGFVEQ 160 (499)
T ss_pred hhHHHHHHHHHHHcC--CCEEEE--EecCC-------hHHHHHHHHHHHHHhCC----eEEEEEEEecCCCCCHHHHHHH
Confidence 467888888888776 777653 33332 23556677777776511 0111233344676778889999
Q ss_pred HHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCch-HHHHHHHHHHHHcCCCccEEEecCCCCH---HHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRN-KSTELISEMYKLTKGKLPIIGVGGVFSG---KDA 274 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~-~~l~~v~~i~~~~~~~ipvia~GGI~s~---~da 274 (328)
++.+ .++|++.|.+..+.. +. .| ...+.++.+++.++.++||-.-+==+.+ .-.
T Consensus 161 a~~l--~~~Gad~I~IkDtaG----------------ll----~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~ 218 (499)
T PRK12330 161 AKRL--LDMGADSICIKDMAA----------------LL----KPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSL 218 (499)
T ss_pred HHHH--HHcCCCEEEeCCCcc----------------CC----CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHH
Confidence 9999 999999998776532 11 12 3457788888887434787654432222 234
Q ss_pred HHHHHhccCeeeehh
Q psy5880 275 FEKIKAGASLVQIYT 289 (328)
Q Consensus 275 ~~~l~~GAd~V~vg~ 289 (328)
.+++++||+.|-.+-
T Consensus 219 laAieAGad~vDtai 233 (499)
T PRK12330 219 MKAIEAGVDVVDTAI 233 (499)
T ss_pred HHHHHcCCCEEEeec
Confidence 566789999887663
No 421
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=93.95 E-value=1.1 Score=38.93 Aligned_cols=120 Identities=16% Similarity=0.125 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhcccccEEEEcc-CCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCE--EEEeCCCCChhhHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNV-SSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPI--LVKIAPDLSLDEKKD 197 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~-scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv--~vKl~~~~~~~~~~~ 197 (328)
...+.++.+...+ +|.|++.+ .+|..++. ....+.++++++. .+.|+ -++... ..+
T Consensus 12 ~~~~~~~~~~~~g--~d~i~~~~~Dg~~~~~~------~~~~~~v~~i~~~-------~~~~v~v~lm~~~------~~~ 70 (210)
T TIGR01163 12 RLGEEVKAVEEAG--ADWIHVDVMDGHFVPNL------TFGPPVLEALRKY-------TDLPIDVHLMVEN------PDR 70 (210)
T ss_pred HHHHHHHHHHHcC--CCEEEEcCCCCCCCCCc------ccCHHHHHHHHhc-------CCCcEEEEeeeCC------HHH
Confidence 3444455555544 99999862 22222111 1234556666643 45675 344432 345
Q ss_pred HHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHH
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~ 277 (328)
+++.+ .++|+|+|+++.... ......++.+++. + +.++..-..++..+..+.
T Consensus 71 ~~~~~--~~~gadgv~vh~~~~-----------------------~~~~~~~~~~~~~-g--~~~~~~~~~~t~~e~~~~ 122 (210)
T TIGR01163 71 YIEDF--AEAGADIITVHPEAS-----------------------EHIHRLLQLIKDL-G--AKAGIVLNPATPLEFLEY 122 (210)
T ss_pred HHHHH--HHcCCCEEEEccCCc-----------------------hhHHHHHHHHHHc-C--CcEEEEECCCCCHHHHHH
Confidence 67888 899999998875321 1113444555544 2 333333445666776666
Q ss_pred HHhccCeeeehh
Q psy5880 278 IKAGASLVQIYT 289 (328)
Q Consensus 278 l~~GAd~V~vg~ 289 (328)
+..++|.|.+++
T Consensus 123 ~~~~~d~i~~~~ 134 (210)
T TIGR01163 123 VLPDVDLVLLMS 134 (210)
T ss_pred HHhhCCEEEEEE
Confidence 777899887753
No 422
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=93.92 E-value=2.8 Score=38.52 Aligned_cols=94 Identities=22% Similarity=0.154 Sum_probs=67.1
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCc-cEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKV-DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT 256 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~-d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~ 256 (328)
.+.||.+|=+...+.+++...++.. ...|+ .++.+..+... +|+ ++......+..+..+++..
T Consensus 130 ~~~pV~~K~g~~~ai~~~~~Aae~~--~~~G~n~~~~l~erglr-------------~g~-~~n~~~~di~~~~~~~~~~ 193 (270)
T PF00793_consen 130 TGKPVGFKNGTFAAIDEWLAAAEKH--LFLGINSGNILCERGLR-------------GGY-GPNYNVLDIAAVPIMKKKT 193 (270)
T ss_dssp TSSEEEEEE-TTSHGGGHHHHHHHH--HHTTECSSEEEEEEEEE-------------ESS-SSSSEEHHTTHHHHHHHHT
T ss_pred CCCeEEeccCCccCHHHHHHHHhhh--hhhcCCCCCeeeeeeee-------------ccc-cccccchhHHHHHHHHHhc
Confidence 6899999999888888888888888 88996 77665544321 334 3333344556677777776
Q ss_pred CCCccEEEe----cCCCC-------HHHHHHHHHhccCeeeehh
Q psy5880 257 KGKLPIIGV----GGVFS-------GKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 257 ~~~ipvia~----GGI~s-------~~da~~~l~~GAd~V~vg~ 289 (328)
. +|||.- .|-.+ +..+.+.+.+|++++|+=+
T Consensus 194 ~--lpVivD~SH~~~~~~~~~q~~V~~~a~aaia~GidGlmiEs 235 (270)
T PF00793_consen 194 H--LPVIVDPSHANSRKDGGRQELVPPLARAAIAAGIDGLMIES 235 (270)
T ss_dssp S--SEEEEEHHHHTTTCGGGGHCGHHHHHHHHHHHTESEEEEEE
T ss_pred C--CCEEECchhhhccccCCchhhHHHHHHHHHhhcCCEEEEee
Confidence 4 899863 34455 7788899999999999865
No 423
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=93.90 E-value=1.1 Score=39.43 Aligned_cols=118 Identities=16% Similarity=0.282 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC--CChhhHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD--LSLDEKKD 197 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~--~~~~~~~~ 197 (328)
+....++++..+.+ .+.|||-+.+|.. .+.++.+++. +| -+-+..+ ++.++
T Consensus 25 e~a~~~a~Ali~gG--i~~IEITl~sp~a------------~e~I~~l~~~---------~p-~~lIGAGTVL~~~q--- 77 (211)
T COG0800 25 EEALPLAKALIEGG--IPAIEITLRTPAA------------LEAIRALAKE---------FP-EALIGAGTVLNPEQ--- 77 (211)
T ss_pred HHHHHHHHHHHHcC--CCeEEEecCCCCH------------HHHHHHHHHh---------Cc-ccEEccccccCHHH---
Confidence 45566666666655 9999998887663 3555555554 34 3334443 45333
Q ss_pred HHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHH
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~ 277 (328)
++.+ .++|+++++--|.. -+.++... ..+ +|++= |+.|+.++..+
T Consensus 78 -~~~a--~~aGa~fiVsP~~~---------------------------~ev~~~a~-~~~--ip~~P--G~~TptEi~~A 122 (211)
T COG0800 78 -ARQA--IAAGAQFIVSPGLN---------------------------PEVAKAAN-RYG--IPYIP--GVATPTEIMAA 122 (211)
T ss_pred -HHHH--HHcCCCEEECCCCC---------------------------HHHHHHHH-hCC--CcccC--CCCCHHHHHHH
Confidence 3556 78999998522211 12333332 222 66664 99999999999
Q ss_pred HHhccCeeeehhHHhhcCchHH
Q psy5880 278 IKAGASLVQIYTSFVYHGPPLV 299 (328)
Q Consensus 278 l~~GAd~V~vg~a~l~~gp~~~ 299 (328)
++.|++.+-+--+-...||.++
T Consensus 123 le~G~~~lK~FPa~~~Gg~~~~ 144 (211)
T COG0800 123 LELGASALKFFPAEVVGGPAML 144 (211)
T ss_pred HHcChhheeecCccccCcHHHH
Confidence 9999998876544332334433
No 424
>PRK06852 aldolase; Validated
Probab=93.90 E-value=2.3 Score=39.72 Aligned_cols=113 Identities=10% Similarity=0.092 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+.+...++.+.+++ +|.|-++..- ..+ ..+++.+.+++++ + ..+||++-=.+-.+.+++.+++
T Consensus 188 ~~ia~aaRiaaELG--ADIVKv~y~~--~~~---~g~~e~f~~vv~~----~------g~vpVviaGG~k~~~~e~L~~v 250 (304)
T PRK06852 188 HLIAGAAGVAACLG--ADFVKVNYPK--KEG---ANPAELFKEAVLA----A------GRTKVVCAGGSSTDPEEFLKQL 250 (304)
T ss_pred HHHHHHHHHHHHHc--CCEEEecCCC--cCC---CCCHHHHHHHHHh----C------CCCcEEEeCCCCCCHHHHHHHH
Confidence 45555555555555 9999876541 101 0123445554432 1 2689998777766666788888
Q ss_pred HHhcccc-CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 200 DVVLDSK-CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 200 ~~l~~~~-~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
+.+ .+ +|+.|+.+.=..++++ .|.+..+++.++..+. ++ .+.+++.+.+
T Consensus 251 ~~a--i~~aGa~Gv~~GRNIfQ~~-------------------~p~~~~~~~Ai~~IVH--------~~-~s~~eA~~~~ 300 (304)
T PRK06852 251 YEQ--IHISGASGNATGRNIHQKP-------------------LDEAVRMCNAIYAITV--------ED-KSVEEALKIY 300 (304)
T ss_pred HHH--HHHcCCceeeechhhhcCC-------------------CchHHHHHHHHHHHHh--------CC-CCHHHHHHHh
Confidence 777 67 9999996543333321 1223466677766553 22 3777777654
Q ss_pred H
Q psy5880 279 K 279 (328)
Q Consensus 279 ~ 279 (328)
+
T Consensus 301 ~ 301 (304)
T PRK06852 301 N 301 (304)
T ss_pred c
Confidence 3
No 425
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=93.89 E-value=1.1 Score=39.23 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEE--EEeCCC-----CC
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPIL--VKIAPD-----LS 191 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~--vKl~~~-----~~ 191 (328)
.+.+..++.++...+ +-+|-+| + .+=++++++. +++||+ +|=... .+
T Consensus 32 ~~iv~~mA~Aa~~gG--AvgiR~~-------g----------v~dIkai~~~-------v~vPIIGIiKrd~~~s~v~IT 85 (229)
T COG3010 32 PEIVAAMALAAEQGG--AVGIRIE-------G----------VEDIKAIRAV-------VDVPIIGIIKRDYPDSPVRIT 85 (229)
T ss_pred hhHHHHHHHHHHhCC--cceEeec-------c----------hhhHHHHHhh-------CCCCeEEEEecCCCCCCceec
Confidence 466778888887776 7777654 1 1113445555 688984 442111 11
Q ss_pred hhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH
Q psy5880 192 LDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG 271 (328)
Q Consensus 192 ~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~ 271 (328)
. .+.+ ++.| .++|++-|.+-.|...||++ .--+++.+.+ . --..+.-.++|.
T Consensus 86 p-tlke-Vd~L--~~~Ga~IIA~DaT~R~RP~~-------------------~~~~~i~~~k--~---~~~l~MAD~St~ 137 (229)
T COG3010 86 P-TLKE-VDAL--AEAGADIIAFDATDRPRPDG-------------------DLEELIARIK--Y---PGQLAMADCSTF 137 (229)
T ss_pred c-cHHH-HHHH--HHCCCcEEEeecccCCCCcc-------------------hHHHHHHHhh--c---CCcEEEeccCCH
Confidence 1 1223 4666 78999998887777655411 0113444422 1 234566689999
Q ss_pred HHHHHHHHhccCeee
Q psy5880 272 KDAFEKIKAGASLVQ 286 (328)
Q Consensus 272 ~da~~~l~~GAd~V~ 286 (328)
+|...+.++|+|.|+
T Consensus 138 ee~l~a~~~G~D~IG 152 (229)
T COG3010 138 EEGLNAHKLGFDIIG 152 (229)
T ss_pred HHHHHHHHcCCcEEe
Confidence 999999999999984
No 426
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=93.88 E-value=1.7 Score=39.21 Aligned_cols=124 Identities=10% Similarity=0.056 Sum_probs=70.8
Q ss_pred hHHHHHHHhhcCccceEEeccCCCCCcC-ccCCCchHH--HH----HHHHHHHHHhhhhcCCCCCcc--hhcccCCcccc
Q psy5880 43 QFWLLGILKFGDVAHYFVVNVSSPNTAN-LRKLQAKDQ--LK----HLLKTVVETRNQLALKPLPPI--LVKIAPDLSLD 113 (328)
Q Consensus 43 ~~y~~~~~~l~~~~~~v~~n~sspN~~g-l~~~~~~~~--L~----~ll~~v~~~~~~~~~~~~~Pv--~vki~~~l~~~ 113 (328)
++|.+.++.+..-+|.+++|++|||-.. -+..+.... ++ ++++.+++. ...|+ +.++.| +
T Consensus 18 ~~~~~~~~~l~~~ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~-------~~~Pl~lM~y~n~-~--- 86 (244)
T PRK13125 18 ESFKEFIIGLVELVDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKD-------VSVPIILMTYLED-Y--- 86 (244)
T ss_pred HHHHHHHHHHHhhCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhcc-------CCCCEEEEEecch-h---
Confidence 3566656655333999999999999742 232221111 10 234444322 13464 245554 2
Q ss_pred cccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChh
Q psy5880 114 EKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLD 193 (328)
Q Consensus 114 ~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~ 193 (328)
....++|++.+..++ +|++.++...+-+ .+...++++.+++ .++..++=+.|..+.+
T Consensus 87 -----~~~~~~~i~~~~~~G--adgvii~dlp~e~--------~~~~~~~~~~~~~--------~Gl~~~~~v~p~T~~e 143 (244)
T PRK13125 87 -----VDSLDNFLNMARDVG--ADGVLFPDLLIDY--------PDDLEKYVEIIKN--------KGLKPVFFTSPKFPDL 143 (244)
T ss_pred -----hhCHHHHHHHHHHcC--CCEEEECCCCCCc--------HHHHHHHHHHHHH--------cCCCEEEEECCCCCHH
Confidence 124678888888877 9999976442111 1234556666655 4678888888887655
Q ss_pred hHHHHHH
Q psy5880 194 EKKDIAD 200 (328)
Q Consensus 194 ~~~~~a~ 200 (328)
.+..+++
T Consensus 144 ~l~~~~~ 150 (244)
T PRK13125 144 LIHRLSK 150 (244)
T ss_pred HHHHHHH
Confidence 5555544
No 427
>PRK06256 biotin synthase; Validated
Probab=93.86 E-value=2.7 Score=39.64 Aligned_cols=168 Identities=11% Similarity=0.095 Sum_probs=88.3
Q ss_pred HHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEE--EeCCCCChhhHHHHHHH
Q psy5880 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILV--KIAPDLSLDEKKDIADV 201 (328)
Q Consensus 124 ~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~v--Kl~~~~~~~~~~~~a~~ 201 (328)
+.++..++++ ++.+.+|+-+ +..............+.+++++.+++ .++++.. =+..+.+.++..+.+..
T Consensus 153 e~l~~LkeaG--~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~-----~Gi~v~~~~I~GlgEt~ed~~~~~~~ 224 (336)
T PRK06256 153 EQAERLKEAG--VDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKA-----AGIEPCSGGIIGMGESLEDRVEHAFF 224 (336)
T ss_pred HHHHHHHHhC--CCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHH-----cCCeeccCeEEeCCCCHHHHHHHHHH
Confidence 4444555555 7777766544 32111111112234556666666543 2344322 22335567788899999
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCC-CCHHHHHHHHHh
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGV-FSGKDAFEKIKA 280 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI-~s~~da~~~l~~ 280 (328)
+ .+.|++.+.++.-.+ .+ ....... .+......++.+..+|-..+ +..|..+||= ....+...+..+
T Consensus 225 l--~~l~~~~v~i~~l~P-~p-------GT~l~~~-~~~~~~e~l~~ia~~Rl~~p-~~~I~~~~gr~~~~~~~~~~~~~ 292 (336)
T PRK06256 225 L--KELDADSIPINFLNP-IP-------GTPLENH-PELTPLECLKTIAIFRLINP-DKEIRIAGGREVNLRSLQPLGLG 292 (336)
T ss_pred H--HhCCCCEEeeccccc-CC-------CCCCCCC-CCCCHHHHHHHHHHHHHHCC-CCeeEecCchhhhchhhHHHHhc
Confidence 9 899999876542111 01 0000011 11111233555565555564 5778777775 345555444337
Q ss_pred ccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCC
Q psy5880 281 GASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYN 316 (328)
Q Consensus 281 GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~ 316 (328)
||+.+++|-.+-..|..+-.++ + .+++.|++
T Consensus 293 g~~~~~~g~~lt~~g~~~~~d~----~-~~~~~g~~ 323 (336)
T PRK06256 293 GANSVIVGNYLTTVGQPATADL----D-MIEDLGFE 323 (336)
T ss_pred cCceeeECCcccCCCCChHHHH----H-HHHHCCCC
Confidence 9999999988754554443333 2 44556664
No 428
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=93.85 E-value=5.5 Score=36.94 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=57.9
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCC--CcCchHHHHHHHHHHHHc-CCCccEEEecCCCCH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG--EPLRNKSTELISEMYKLT-KGKLPIIGVGGVFSG 271 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg--~~~~~~~l~~v~~i~~~~-~~~ipvia~GGI~s~ 271 (328)
+.+..+.+ ++.|+|.+.++-++ ..|.|.+ .|. +.++.+++|++.+ + +|++.-||=..+
T Consensus 157 P~~a~~Fv--~~TgvD~LAvaiGt-------------~HG~y~~~~~p~--Ld~~~L~~I~~~~~~--iPLVlHGgSG~~ 217 (287)
T PF01116_consen 157 PEEAKEFV--EETGVDALAVAIGT-------------AHGMYKGGKKPK--LDFDRLKEIREAVPD--IPLVLHGGSGLP 217 (287)
T ss_dssp HHHHHHHH--HHHTTSEEEE-SSS-------------BSSSBSSSSSTC----HHHHHHHHHHHHT--SEEEESSCTTS-
T ss_pred HHHHHHHH--HHhCCCEEEEecCc-------------cccccCCCCCcc--cCHHHHHHHHHhcCC--CCEEEECCCCCC
Confidence 45555666 67899999776433 2355666 332 5678899999999 7 999999998887
Q ss_pred H-HHHHHHHhccCeeeehhHHh
Q psy5880 272 K-DAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 272 ~-da~~~l~~GAd~V~vg~a~l 292 (328)
+ ++.+++..|..=|=++|.+.
T Consensus 218 ~e~~~~ai~~Gi~KiNi~T~~~ 239 (287)
T PF01116_consen 218 DEQIRKAIKNGISKINIGTELR 239 (287)
T ss_dssp HHHHHHHHHTTEEEEEESHHHH
T ss_pred HHHHHHHHHcCceEEEEehHHH
Confidence 7 78889999988899999774
No 429
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=93.81 E-value=1.6 Score=41.85 Aligned_cols=94 Identities=14% Similarity=0.059 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCc
Q psy5880 161 KHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEP 240 (328)
Q Consensus 161 ~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~ 240 (328)
.+.++++|+. ++ .++.+++.-...++.++...+++.+ .+.++.++- . |
T Consensus 150 ~~~v~avre~---~G--~~~~l~vDaN~~w~~~~A~~~~~~l--~~~~l~~iE-------e------------------P 197 (361)
T cd03322 150 PKLFEAVREK---FG--FEFHLLHDVHHRLTPNQAARFGKDV--EPYRLFWME-------D------------------P 197 (361)
T ss_pred HHHHHHHHhc---cC--CCceEEEECCCCCCHHHHHHHHHHh--hhcCCCEEE-------C------------------C
Confidence 4456666654 34 5678888888778888888999998 777776651 1 1
Q ss_pred CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeeh
Q psy5880 241 LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIY 288 (328)
Q Consensus 241 ~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg 288 (328)
..+..++..+++++..+ +||.+.=.+.+..++.+++..| +|.+++-
T Consensus 198 ~~~~d~~~~~~L~~~~~--~pia~gE~~~~~~~~~~~i~~~a~di~~~d 244 (361)
T cd03322 198 TPAENQEAFRLIRQHTA--TPLAVGEVFNSIWDWQNLIQERLIDYIRTT 244 (361)
T ss_pred CCcccHHHHHHHHhcCC--CCEEeccCCcCHHHHHHHHHhCCCCEEecC
Confidence 11223445556666655 7766655566777777777665 6666654
No 430
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=93.78 E-value=1.5 Score=40.70 Aligned_cols=128 Identities=13% Similarity=0.187 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCh-hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSL-DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG 238 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~-~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg 238 (328)
+.+++..+++.++. .++||++.+-.++.. .++...++.+ +++|+.+|++=...... ..|-+.|
T Consensus 62 ~~e~~~~~~~I~~~----~~lPv~aD~dtGyG~~~~v~r~V~~~--~~aGaagi~IEDq~~pK----------~cg~~~~ 125 (294)
T TIGR02319 62 VSEQAINAKNIVLA----VDVPVIMDADAGYGNAMSVWRATREF--ERVGIVGYHLEDQVNPK----------RCGHLEG 125 (294)
T ss_pred HHHHHHHHHHHHhc----cCCCEEEECCCCCCCcHHHHHHHHHH--HHcCCeEEEEECCCCcc----------ccCCCCC
Confidence 44555555554332 689999999876533 3466678999 99999999886543210 1122334
Q ss_pred CcCchHHHHHHHHHHHHc---C-CCccEEEecCC---CCHHHHH----HHHHhccCeeeehhHHhhcCchHHHHHHHHHH
Q psy5880 239 EPLRNKSTELISEMYKLT---K-GKLPIIGVGGV---FSGKDAF----EKIKAGASLVQIYTSFVYHGPPLVTRIKSELE 307 (328)
Q Consensus 239 ~~~~~~~l~~v~~i~~~~---~-~~ipvia~GGI---~s~~da~----~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~ 307 (328)
..+.+.. +++.+|+... . .++-|++=-.. ...+++. .+.++|||+|.+-. + ..++.++++.+.+.
T Consensus 126 k~lv~~e-e~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~-~--~~~~ei~~~~~~~~ 201 (294)
T TIGR02319 126 KRLISTE-EMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEA-M--LDVEEMKRVRDEID 201 (294)
T ss_pred ccccCHH-HHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecC-C--CCHHHHHHHHHhcC
Confidence 4333322 4444443332 1 12334432211 2345554 34569999999864 2 45788888877653
No 431
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=93.77 E-value=0.94 Score=41.19 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHH-------HHHHHHHHHhhcCCCCCCEEEEeCCCCChh
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHL-------LKTVVETRNQLAVKPLPPILVKIAPDLSLD 193 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i-------~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~ 193 (328)
.+..|.+.++..+ +.+|. || |.. +.-..+.++.+.+. ++.|+.+++. + ++=++.-++.+
T Consensus 96 ~~~~fl~~lk~~G--f~GV~-Nf--PTv-gliDG~fR~~LEe~Gmgy~~EVemi~~A~~~-g-------l~T~~yvf~~e 161 (268)
T PF09370_consen 96 DMDRFLDELKELG--FSGVQ-NF--PTV-GLIDGQFRQNLEETGMGYDREVEMIRKAHEK-G-------LFTTAYVFNEE 161 (268)
T ss_dssp -HHHHHHHHHHHT---SEEE-E---S-G-GG--HHHHHHHHHTT--HHHHHHHHHHHHHT-T--------EE--EE-SHH
T ss_pred cHHHHHHHHHHhC--CceEE-EC--Ccc-eeeccHHHHHHHhcCCCHHHHHHHHHHHHHC-C-------CeeeeeecCHH
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc-------CCCccEEEec
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT-------KGKLPIIGVG 266 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-------~~~ipvia~G 266 (328)
+ ++++ .++|+|.|++|-.... ||..|......--+.+.++.+.. ++-+-++-.|
T Consensus 162 ~----A~~M--~~AGaDiiv~H~GlT~-------------gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGG 222 (268)
T PF09370_consen 162 Q----ARAM--AEAGADIIVAHMGLTT-------------GGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGG 222 (268)
T ss_dssp H----HHHH--HHHT-SEEEEE-SS-----------------------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECT
T ss_pred H----HHHH--HHcCCCEEEecCCccC-------------CCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Q ss_pred CCCCHHHHHHHHH--hccCeeeehhHH
Q psy5880 267 GVFSGKDAFEKIK--AGASLVQIYTSF 291 (328)
Q Consensus 267 GI~s~~da~~~l~--~GAd~V~vg~a~ 291 (328)
-|.+|+|+..+++ .|++...-+|++
T Consensus 223 PI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 223 PIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp TB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred CCCCHHHHHHHHhcCCCCCEEecccch
No 432
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=93.76 E-value=0.8 Score=43.71 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=66.4
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCc--c-ch-hhh----ccc-c----ccccCCCCCCc-----
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTV--D-RY-EYL----DAR-Y----KEETGGLSGEP----- 240 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~--~-~~-~~~----~~~-~----~~~~gg~sg~~----- 240 (328)
+-|.++.+=..-+.+-..++.+.+ +++|+..|.++--+. + +. +.. .|. . ........++.
T Consensus 124 ~~~~wfQlY~~~d~~~~~~ll~rA--~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 201 (351)
T cd04737 124 GGPKWFQLYMSKDDGFNRSLLDRA--KAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIY 201 (351)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHH--HHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhh
Confidence 458899887655666678889999 999999988764221 1 11 000 010 0 00000000000
Q ss_pred --C-chHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeee
Q psy5880 241 --L-RNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287 (328)
Q Consensus 241 --~-~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~v 287 (328)
. ...+++.++.+++..+ +||+.= ||.+++|+..+.++|+|+|.+
T Consensus 202 ~~~~~~~~~~~l~~lr~~~~--~PvivK-gv~~~~dA~~a~~~G~d~I~v 248 (351)
T cd04737 202 AAAKQKLSPADIEFIAKISG--LPVIVK-GIQSPEDADVAINAGADGIWV 248 (351)
T ss_pred hhccCCCCHHHHHHHHHHhC--CcEEEe-cCCCHHHHHHHHHcCCCEEEE
Confidence 0 1234677888888887 899866 689999999999999999988
No 433
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=93.74 E-value=1.6 Score=36.83 Aligned_cols=91 Identities=15% Similarity=0.061 Sum_probs=56.4
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.+.|+++.+......+.....++.+ .++|+|+|.++..... . .....+.++.+++.++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~a~~~--~~~g~d~v~l~~~~~~----------------~----~~~~~~~~~~i~~~~~ 113 (200)
T cd04722 56 TDLPLGVQLAINDAAAAVDIAAAAA--RAAGADGVEIHGAVGY----------------L----AREDLELIRELREAVP 113 (200)
T ss_pred cCCcEEEEEccCCchhhhhHHHHHH--HHcCCCEEEEeccCCc----------------H----HHHHHHHHHHHHHhcC
Confidence 5789999886543332233335678 8999999988864321 0 0123467788888762
Q ss_pred CCccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 258 GKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 258 ~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
+++++..-...+..+...+...|++.+.+....
T Consensus 114 -~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~ 146 (200)
T cd04722 114 -DVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGG 146 (200)
T ss_pred -CceEEEEECCCCccchhhHHHcCCCEEEEcCCc
Confidence 377776554433322222467899999987654
No 434
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=93.74 E-value=0.44 Score=51.51 Aligned_cols=73 Identities=25% Similarity=0.260 Sum_probs=56.2
Q ss_pred CCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCc-hHHHHHHHHHHHH
Q psy5880 236 LSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGP-PLVTRIKSELEEL 309 (328)
Q Consensus 236 ~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp-~~~~~i~~~l~~~ 309 (328)
+||.+++|.++....++.+.++++.||.++||- +.--+.+....|-+-|-+++.+|..+- .-...+.+.|+..
T Consensus 322 ~sg~~l~~~~~~~~~~l~~~f~g~~~i~~~~g~-~~~n~~~~~~~gi~pv~~a~~~lk~~~~~~~~~l~~~l~~~ 395 (1012)
T TIGR03315 322 MSGRALFPLSINLAAKLSREFDGKLQISYSGGA-DIFNIKEIFDTGIWPITMATTLLKPGGYLRLNQCANELETS 395 (1012)
T ss_pred ccCCccccchHHHHHhhHHhhCCCCceEEEecc-ccccHHhhcCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 799999999999999999999889999999994 444556777899999999999985322 2244555555443
No 435
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=93.74 E-value=0.69 Score=42.09 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCC-EEEEeCCC---CChhhHHHHHHHhccccCCccEEEEecC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPP-ILVKIAPD---LSLDEKKDIADVVLDSKCKVDGLIVSNT 217 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~P-v~vKl~~~---~~~~~~~~~a~~l~~~~~G~d~i~~~n~ 217 (328)
+.+++..++..++. .+.| |++-+.-+ .+.++..+-+.++. +++|+++|.+-+.
T Consensus 57 l~em~~~~~~V~r~----~~~p~viaD~~fg~y~~~~~~av~~a~r~~-~~aGa~aVkiEd~ 113 (254)
T cd06557 57 LDEMIYHTRAVRRG----APRALVVADMPFGSYQTSPEQALRNAARLM-KEAGADAVKLEGG 113 (254)
T ss_pred HHHHHHHHHHHHhc----CCCCeEEEeCCCCcccCCHHHHHHHHHHHH-HHhCCeEEEEcCc
Confidence 44555555554332 6778 78888522 23445444444440 4599999987543
No 436
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=93.72 E-value=4.1 Score=37.74 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=58.1
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH-HH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG-KD 273 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~-~d 273 (328)
+.+..+.+ .+.|+|.+-++-++. .|-|.+++- +.++.+++|++.++ +|++.-||=..+ ++
T Consensus 158 peeA~~Fv--~~TgvD~LAvaiGt~-------------HG~Y~~~p~--L~~~~L~~I~~~~~--iPLVLHGgSG~~~e~ 218 (285)
T PRK07709 158 PAECKHLV--EATGIDCLAPALGSV-------------HGPYKGEPN--LGFAEMEQVRDFTG--VPLVLHGGTGIPTAD 218 (285)
T ss_pred HHHHHHHH--HHhCCCEEEEeeccc-------------ccCcCCCCc--cCHHHHHHHHHHHC--CCEEEeCCCCCCHHH
Confidence 44555555 667999987754332 244555432 45678899999887 999999998887 67
Q ss_pred HHHHHHhccCeeeehhHHh
Q psy5880 274 AFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l 292 (328)
+.+++..|..=|=++|.+.
T Consensus 219 ~~~ai~~Gi~KiNi~T~l~ 237 (285)
T PRK07709 219 IEKAISLGTSKINVNTENQ 237 (285)
T ss_pred HHHHHHcCCeEEEeChHHH
Confidence 7889999988899999874
No 437
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.72 E-value=0.44 Score=43.74 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=85.5
Q ss_pred HHHHHHhcccccEEEEccC-CCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCh-hhHHHHHHHhc
Q psy5880 126 VKGILKFGDVAHYFVVNVS-SPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSL-DEKKDIADVVL 203 (328)
Q Consensus 126 ~~~a~~~~~~~d~ieiN~s-cPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~-~~~~~~a~~l~ 203 (328)
+..+++++ |.++-+-=. +-.+-|.++++ .-.+.+++..+++..+. .++||+|.+-.++.. .....-++.+
T Consensus 31 A~la~~aG--F~al~~sg~~vA~slG~pD~~-~~t~~e~~~~vrrI~~a----~~lPv~vD~dtGfG~~~nvartV~~~- 102 (289)
T COG2513 31 ALLAERAG--FKALYLSGAGVAASLGLPDLG-ITTLDEVLADARRITDA----VDLPVLVDIDTGFGEALNVARTVREL- 102 (289)
T ss_pred HHHHHHcC--CeEEEeccHHHHHhcCCCccc-cccHHHHHHHHHHHHhh----cCCceEEeccCCCCcHHHHHHHHHHH-
Confidence 35566666 887764200 00001222211 11245555555555433 789999999877654 2455666778
Q ss_pred cccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHH--HHHHHHHHHHcC-CCccEE------EecCCCCHHHH
Q psy5880 204 DSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKS--TELISEMYKLTK-GKLPII------GVGGVFSGKDA 274 (328)
Q Consensus 204 ~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~--l~~v~~i~~~~~-~~ipvi------a~GGI~s~~da 274 (328)
+++|+.++++=...... ..|-+.|+.+.+.. .+.|+.+++... .++-|+ +.|| .+++
T Consensus 103 -~~aG~agi~iEDq~~pk----------~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~---ld~A 168 (289)
T COG2513 103 -EQAGAAGIHIEDQVGPK----------RCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEG---LDDA 168 (289)
T ss_pred -HHcCcceeeeeecccch----------hcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhcc---HHHH
Confidence 89999999875543220 11224566665543 334444444332 123333 3455 3444
Q ss_pred ----HHHHHhccCeeeehhHHhhcCchHHHHHHHHHH
Q psy5880 275 ----FEKIKAGASLVQIYTSFVYHGPPLVTRIKSELE 307 (328)
Q Consensus 275 ----~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~ 307 (328)
..+.++|||++- ...+ ++++-++++.+...
T Consensus 169 I~Ra~AY~eAGAD~if--~~al-~~~e~i~~f~~av~ 202 (289)
T COG2513 169 IERAQAYVEAGADAIF--PEAL-TDLEEIRAFAEAVP 202 (289)
T ss_pred HHHHHHHHHcCCcEEc--cccC-CCHHHHHHHHHhcC
Confidence 446679999884 3333 45777888877664
No 438
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=93.69 E-value=2.2 Score=38.03 Aligned_cols=109 Identities=13% Similarity=0.115 Sum_probs=68.7
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.++|+.....+....++..++.+.+ .+.|+++++ ++.... .....++.++.+.++
T Consensus 57 lgiPl~~~~~~~~~e~~~~~l~~~l--~~~gv~~vv-~GdI~s----------------------~~qr~~~e~vc~~~g 111 (222)
T TIGR00289 57 VGIPLIKLYTSGEEEKEVEDLAGQL--GELDVEALC-IGAIES----------------------NYQKSRIDKVCRELG 111 (222)
T ss_pred cCCCeEEEEcCCchhHHHHHHHHHH--HHcCCCEEE-ECcccc----------------------HHHHHHHHHHHHHcC
Confidence 6799877666654555688888888 888999884 332221 123456666666653
Q ss_pred --CCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHH-----HHHHHHHHHHHHhCC
Q psy5880 258 --GKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVT-----RIKSELEELLQKEGY 315 (328)
Q Consensus 258 --~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~-----~i~~~l~~~m~~~g~ 315 (328)
.-.|+.. .+.++..++++.|.+++.++.....=++.|+. ++.++|....++.|+
T Consensus 112 l~~~~PLW~----~d~~~l~e~i~~Gf~aiIv~v~~~gL~~~~LGr~id~~~~~~L~~l~~~~gi 172 (222)
T TIGR00289 112 LKSIAPLWH----ADPEKLMYEVAEKFEVIIVSVSAMGLDESWLGRRIDKECIDDLKRLNEKYGI 172 (222)
T ss_pred CEEeccccC----CCHHHHHHHHHcCCeEEEEEEccCCCChHHcCCccCHHHHHHHHHHHhhcCc
Confidence 1256663 45577789999998888877654322466642 344455555555665
No 439
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=93.68 E-value=1.2 Score=42.38 Aligned_cols=154 Identities=10% Similarity=0.051 Sum_probs=80.1
Q ss_pred hhHHHHHHHhHHHHHHHhhcCc-cceEEeccC---------CCCCc------CccCCCch-HHHHHHHHHHHHHhhhhcC
Q psy5880 34 FARMRAWVLQFWLLGILKFGDV-AHYFVVNVS---------SPNTA------NLRKLQAK-DQLKHLLKTVVETRNQLAL 96 (328)
Q Consensus 34 ~~~v~~~~l~~y~~~~~~l~~~-~~~v~~n~s---------spN~~------gl~~~~~~-~~L~~ll~~v~~~~~~~~~ 96 (328)
.+.+. .++++|...++.+... .|.|++|.. ||.+- |- ++.+. .-+.+++++|++.-
T Consensus 134 ~eeI~-~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGG-slenR~Rf~~eii~~ir~~~----- 206 (337)
T PRK13523 134 KEQIK-ETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGG-SPENRYRFLREIIDAVKEVW----- 206 (337)
T ss_pred HHHHH-HHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCC-CHHHHHHHHHHHHHHHHHhc-----
Confidence 44454 5678888888765332 488888866 67331 21 22222 22456666666553
Q ss_pred CCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcC
Q psy5880 97 KPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAV 176 (328)
Q Consensus 97 ~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~ 176 (328)
..|+.+|+.++=.. ....+.++..++++.+++.+ +|+|++........ .....+....++.+.+++.
T Consensus 207 --~~~v~vRis~~d~~-~~G~~~~e~~~i~~~l~~~g--vD~i~vs~g~~~~~--~~~~~~~~~~~~~~~ik~~------ 273 (337)
T PRK13523 207 --DGPLFVRISASDYH-PGGLTVQDYVQYAKWMKEQG--VDLIDVSSGAVVPA--RIDVYPGYQVPFAEHIREH------ 273 (337)
T ss_pred --CCCeEEEecccccC-CCCCCHHHHHHHHHHHHHcC--CCEEEeCCCCCCCC--CCCCCccccHHHHHHHHhh------
Confidence 24888888753111 11112344555555555544 89999865431110 0001122234556667665
Q ss_pred CCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 177 KPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 177 ~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
.++||++= ..+.. ...+.+.+ .+.++|.|.+
T Consensus 274 -~~ipVi~~--G~i~~--~~~a~~~l--~~g~~D~V~~ 304 (337)
T PRK13523 274 -ANIATGAV--GLITS--GAQAEEIL--QNNRADLIFI 304 (337)
T ss_pred -cCCcEEEe--CCCCC--HHHHHHHH--HcCCCChHHh
Confidence 67898763 33321 22333334 4445898744
No 440
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=93.67 E-value=0.84 Score=43.69 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 245 STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
.++.++.+++..+ .|||.- ||.+++|+.+++++|+|+|.|+
T Consensus 224 ~w~~i~~ir~~~~--~pviiK-gV~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 224 NWQDLRWLRDLWP--HKLLVK-GIVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred CHHHHHHHHHhCC--CCEEEe-cCCCHHHHHHHHHCCcCEEEEC
Confidence 4678889999987 788887 5999999999999999999875
No 441
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.66 E-value=2.1 Score=39.68 Aligned_cols=127 Identities=13% Similarity=0.165 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCC-hhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCC-CC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLS-LDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG-LS 237 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~-~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg-~s 237 (328)
+.++++.+++..+. .++||++.+-.++. ...+...++.+ .++|+.+|++=..... ...| +.
T Consensus 58 ~~e~~~~~~~I~~~----~~iPviaD~d~GyG~~~~v~~tv~~~--~~aG~agi~IEDq~~p-----------K~cgh~~ 120 (285)
T TIGR02317 58 LDEVAEDARRITRV----TDLPLLVDADTGFGEAFNVARTVREM--EDAGAAAVHIEDQVLP-----------KRCGHLP 120 (285)
T ss_pred HHHHHHHHHHHHhc----cCCCEEEECCCCCCCHHHHHHHHHHH--HHcCCeEEEEecCCCc-----------cccCCCC
Confidence 44555555554332 68999999987654 34566778889 9999999988654321 0122 23
Q ss_pred CCcCchHH--HHHHHHHHHHcC-CCccEEEecCC---CCHHHHHH----HHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 238 GEPLRNKS--TELISEMYKLTK-GKLPIIGVGGV---FSGKDAFE----KIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 238 g~~~~~~~--l~~v~~i~~~~~-~~ipvia~GGI---~s~~da~~----~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
|..+.|.. ...|+.+++... .++-|++=-.. ...+++.+ +.++|||+|.+-. + ..++.++++.+.+
T Consensus 121 g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g-~--~~~e~i~~~~~~i 196 (285)
T TIGR02317 121 GKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEA-L--TSLEEFRQFAKAV 196 (285)
T ss_pred CccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCC-C--CCHHHHHHHHHhc
Confidence 44333322 333333333322 12334332221 12455543 4468999999854 2 3467777777664
No 442
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=93.54 E-value=1.7 Score=40.76 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+....+++-.... ++++|-+|-|. |.-.....+.-.++++.+.+..+ .++||++=+....+ ++..+++
T Consensus 29 ~~l~~lv~~li~~--Gv~Gi~v~Gst----GE~~~Lt~eEr~~v~~~~~~~~~-----grvpvi~Gv~~~~t-~~ai~~a 96 (309)
T cd00952 29 DETARLVERLIAA--GVDGILTMGTF----GECATLTWEEKQAFVATVVETVA-----GRVPVFVGATTLNT-RDTIART 96 (309)
T ss_pred HHHHHHHHHHHHc--CCCEEEECccc----ccchhCCHHHHHHHHHHHHHHhC-----CCCCEEEEeccCCH-HHHHHHH
Confidence 4455555555444 49999876552 32222223444556665555532 57899998876544 5688999
Q ss_pred HHhccccCCccEEEEecCCc
Q psy5880 200 DVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~ 219 (328)
+.+ .++|+|++.+....+
T Consensus 97 ~~A--~~~Gad~vlv~~P~y 114 (309)
T cd00952 97 RAL--LDLGADGTMLGRPMW 114 (309)
T ss_pred HHH--HHhCCCEEEECCCcC
Confidence 999 999999998876543
No 443
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=93.54 E-value=0.91 Score=41.98 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcC
Q psy5880 162 HLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPL 241 (328)
Q Consensus 162 ~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~ 241 (328)
.+.++|+++++.. ...+|.|=+. + +.++ +.+ .++|+|.|-+-|....
T Consensus 175 ~i~~av~~~r~~~---~~~kIeVEv~---t---leqa-~ea--~~agaDiI~LDn~~~e--------------------- 221 (284)
T PRK06096 175 DWSGAINQLRRHA---PEKKIVVEAD---T---PKEA-IAA--LRAQPDVLQLDKFSPQ--------------------- 221 (284)
T ss_pred cHHHHHHHHHHhC---CCCCEEEECC---C---HHHH-HHH--HHcCCCEEEECCCCHH---------------------
Confidence 4555555554332 2344555543 2 3444 334 5899999988764321
Q ss_pred chHHH-HHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhH
Q psy5880 242 RNKST-ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 242 ~~~~l-~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a 290 (328)
.+ +.++.+++. .+++.+-++||| |.+.+.++..+|+|.+.+|..
T Consensus 222 ---~l~~av~~~~~~-~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 222 ---QATEIAQIAPSL-APHCTLSLAGGI-NLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred ---HHHHHHHHhhcc-CCCeEEEEECCC-CHHHHHHHHhcCCCEEEECcc
Confidence 11 222222221 245889999998 799999999999999977764
No 444
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=93.52 E-value=0.71 Score=41.82 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=76.8
Q ss_pred CCCCEEE---EeCCCCC----hhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHH
Q psy5880 178 PLPPILV---KIAPDLS----LDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELIS 250 (328)
Q Consensus 178 ~~~Pv~v---Kl~~~~~----~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~ 250 (328)
.+.+|++ |-||... .-+..++++.. +++|+++|.+-... ..+.| +.++++
T Consensus 44 ~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Y--e~~GAa~iSVLTd~---------------~~F~G------s~e~L~ 100 (254)
T COG0134 44 GKPAVIAEVKKASPSKGLIREDFDPVEIAKAY--EEGGAAAISVLTDP---------------KYFQG------SFEDLR 100 (254)
T ss_pred CCceEEEEeecCCCCCCcccccCCHHHHHHHH--HHhCCeEEEEecCc---------------cccCC------CHHHHH
Confidence 3567776 4456431 23477899999 89999999876422 11333 257889
Q ss_pred HHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCCC
Q psy5880 251 EMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNS 317 (328)
Q Consensus 251 ~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~s 317 (328)
.+++.+. +||.-===|-++.++.++...|||+|.+=-++|- ..-. +++.++-.+.|..-
T Consensus 101 ~v~~~v~--~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~--~~~l----~el~~~A~~LGm~~ 159 (254)
T COG0134 101 AVRAAVD--LPVLRKDFIIDPYQIYEARAAGADAVLLIVAALD--DEQL----EELVDRAHELGMEV 159 (254)
T ss_pred HHHHhcC--CCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcC--HHHH----HHHHHHHHHcCCee
Confidence 9999998 9999888899999999999999999987776652 2322 33445555666543
No 445
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=93.50 E-value=2.3 Score=36.79 Aligned_cols=119 Identities=14% Similarity=0.069 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEE--EeCCCCChhhHHHHHH
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILV--KIAPDLSLDEKKDIAD 200 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~v--Kl~~~~~~~~~~~~a~ 200 (328)
++..+.++.+.++.+.+|+++.. . + .+-.+.++.+++.. .++|+++ |+... . ..+++
T Consensus 13 ~~~~~~~~~l~~~i~~ieig~~~--~---~-----~~g~~~i~~i~~~~------~~~~i~~~~~v~~~-~----~~~~~ 71 (202)
T cd04726 13 EEALELAKKVPDGVDIIEAGTPL--I---K-----SEGMEAVRALREAF------PDKIIVADLKTADA-G----ALEAE 71 (202)
T ss_pred HHHHHHHHHhhhcCCEEEcCCHH--H---H-----HhCHHHHHHHHHHC------CCCEEEEEEEeccc-c----HHHHH
Confidence 34444445554457889974331 0 0 11145566666531 4788887 54422 1 23457
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEE-ecCCCCHHHHHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIG-VGGVFSGKDAFEKIK 279 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia-~GGI~s~~da~~~l~ 279 (328)
.+ .++|+|+++++..... ....+.++.+++. + ++++. .=+..|++++.+++.
T Consensus 72 ~~--~~aGad~i~~h~~~~~----------------------~~~~~~i~~~~~~-g--~~~~v~~~~~~t~~e~~~~~~ 124 (202)
T cd04726 72 MA--FKAGADIVTVLGAAPL----------------------STIKKAVKAAKKY-G--KEVQVDLIGVEDPEKRAKLLK 124 (202)
T ss_pred HH--HhcCCCEEEEEeeCCH----------------------HHHHHHHHHHHHc-C--CeEEEEEeCCCCHHHHHHHHH
Confidence 77 8999999998863210 0112445555543 3 66665 378899999999888
Q ss_pred hccCeeeehh
Q psy5880 280 AGASLVQIYT 289 (328)
Q Consensus 280 ~GAd~V~vg~ 289 (328)
.|+|.|.++.
T Consensus 125 ~~~d~v~~~~ 134 (202)
T cd04726 125 LGVDIVILHR 134 (202)
T ss_pred CCCCEEEEcC
Confidence 8999998853
No 446
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=93.43 E-value=2.4 Score=36.07 Aligned_cols=27 Identities=19% Similarity=0.010 Sum_probs=21.7
Q ss_pred EecCCCCHHHHHHHHHhccCeeeehhH
Q psy5880 264 GVGGVFSGKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 264 a~GGI~s~~da~~~l~~GAd~V~vg~a 290 (328)
....++|.+++.++...|+|.|.++.-
T Consensus 98 ~g~~~~t~~~~~~~~~~g~d~i~~~~~ 124 (196)
T cd00564 98 IGVSTHSLEEALRAEELGADYVGFGPV 124 (196)
T ss_pred EEeeCCCHHHHHHHhhcCCCEEEECCc
Confidence 334468999999999999999988743
No 447
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=93.42 E-value=3.2 Score=37.99 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=31.6
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecC
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGG 267 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GG 267 (328)
++.+-++.+ +++|++.|.+-+- | . +.++++.+.++ +|+|+.|.
T Consensus 162 ~~i~ra~a~--~eAGA~~i~lE~v-------------------------~-~-~~~~~i~~~l~--iP~igiGa 204 (264)
T PRK00311 162 KLLEDAKAL--EEAGAFALVLECV-------------------------P-A-ELAKEITEALS--IPTIGIGA 204 (264)
T ss_pred HHHHHHHHH--HHCCCCEEEEcCC-------------------------C-H-HHHHHHHHhCC--CCEEEecc
Confidence 456667777 8999999976542 1 1 56788888887 99998763
No 448
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=93.37 E-value=0.18 Score=45.54 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=48.1
Q ss_pred CCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 235 GLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 235 g~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
.+.|+.+ ..+|++++++++.++ +||+. -|++++++..+.+. +|.+|||.-.+. +.++++.+.
T Consensus 52 sFqG~G~-eeGL~iL~~vk~~~g--lpvvT--eV~~~~~~~~vae~-vDilQIgArn~r-n~~LL~a~g 113 (258)
T TIGR01362 52 SFRGPGL-EEGLKILQKVKEEFG--VPILT--DVHESSQCEPVAEV-VDIIQIPAFLCR-QTDLLVAAA 113 (258)
T ss_pred CCCCCCH-HHHHHHHHHHHHHhC--CceEE--EeCCHHHHHHHHhh-CcEEEeCchhcc-hHHHHHHHh
Confidence 3455432 357899999999998 99987 89999999999887 999999987764 355555443
No 449
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=93.36 E-value=2.9 Score=38.43 Aligned_cols=86 Identities=15% Similarity=0.197 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ ++++-+|-+. |.-.....+.-.++++.+.+... .++||++=++.. +.++..++
T Consensus 20 ~~~~~~~i~~l~~~G--v~gl~v~Gst----GE~~~lt~~Er~~l~~~~~~~~~-----~~~~vi~gv~~~-~~~~~~~~ 87 (284)
T cd00950 20 FDALERLIEFQIENG--TDGLVVCGTT----GESPTLSDEEHEAVIEAVVEAVN-----GRVPVIAGTGSN-NTAEAIEL 87 (284)
T ss_pred HHHHHHHHHHHHHcC--CCEEEECCCC----cchhhCCHHHHHHHHHHHHHHhC-----CCCcEEeccCCc-cHHHHHHH
Confidence 345555555555444 9999876442 22222233444555665555531 468999887764 44578899
Q ss_pred HHHhccccCCccEEEEecCC
Q psy5880 199 ADVVLDSKCKVDGLIVSNTT 218 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~ 218 (328)
++.+ +++|+|++.+....
T Consensus 88 a~~a--~~~G~d~v~~~~P~ 105 (284)
T cd00950 88 TKRA--EKAGADAALVVTPY 105 (284)
T ss_pred HHHH--HHcCCCEEEEcccc
Confidence 9999 99999999887543
No 450
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.35 E-value=0.96 Score=36.86 Aligned_cols=93 Identities=17% Similarity=0.081 Sum_probs=55.1
Q ss_pred EEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccE
Q psy5880 183 LVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPI 262 (328)
Q Consensus 183 ~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipv 262 (328)
.+.+..+.+ ..++++.+ .+.++|.|.+++..... .+..-+.+.++++.-..+++|
T Consensus 33 Vi~lg~~~s---~e~~v~aa--~e~~adii~iSsl~~~~--------------------~~~~~~~~~~L~~~g~~~i~v 87 (132)
T TIGR00640 33 VDVGPLFQT---PEEIARQA--VEADVHVVGVSSLAGGH--------------------LTLVPALRKELDKLGRPDILV 87 (132)
T ss_pred EEECCCCCC---HHHHHHHH--HHcCCCEEEEcCchhhh--------------------HHHHHHHHHHHHhcCCCCCEE
Confidence 445666555 34677777 78899999887643221 112234555666653224555
Q ss_pred EEecCCCCHHHHHHHHHhccCee-eehhHHhhcCchHHHHHHHH
Q psy5880 263 IGVGGVFSGKDAFEKIKAGASLV-QIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 263 ia~GGI~s~~da~~~l~~GAd~V-~vg~a~l~~gp~~~~~i~~~ 305 (328)
++ ||....++..++.++|.|.+ ..||.+. +.+..+.+.
T Consensus 88 iv-GG~~~~~~~~~l~~~Gvd~~~~~gt~~~----~i~~~l~~~ 126 (132)
T TIGR00640 88 VV-GGVIPPQDFDELKEMGVAEIFGPGTPIP----ESAIFLLKK 126 (132)
T ss_pred EE-eCCCChHhHHHHHHCCCCEEECCCCCHH----HHHHHHHHH
Confidence 55 66667788999999997655 3344331 344554443
No 451
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.25 E-value=3 Score=39.53 Aligned_cols=155 Identities=12% Similarity=0.149 Sum_probs=79.5
Q ss_pred HHHhHHHHHHHhhcCc-cceEEeccC---------CCCCc-----CccCCCch-HHHHHHHHHHHHHhhhhcCCCCCcch
Q psy5880 40 WVLQFWLLGILKFGDV-AHYFVVNVS---------SPNTA-----NLRKLQAK-DQLKHLLKTVVETRNQLALKPLPPIL 103 (328)
Q Consensus 40 ~~l~~y~~~~~~l~~~-~~~v~~n~s---------spN~~-----gl~~~~~~-~~L~~ll~~v~~~~~~~~~~~~~Pv~ 103 (328)
.++++|.+.++.+... .|.|++|.. ||.+- +--++.+. .-+.+++++|++.. + ...|+.
T Consensus 146 ~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~av---G--~d~~v~ 220 (338)
T cd04733 146 DVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAV---G--PGFPVG 220 (338)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHc---C--CCCeEE
Confidence 4778888888865432 488998865 46432 11123222 22345555555543 1 235777
Q ss_pred hcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcch---hh--h-hhhHHHHHHHHHHHHHHHhhcCC
Q psy5880 104 VKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANL---RK--L-QAKDQLKHLLKTVVETRNQLAVK 177 (328)
Q Consensus 104 vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~---~~--~-~~~~~~~~i~~~v~~~~~~~~~~ 177 (328)
+++.+.= ......+.++..++++.+++++ .|+|+++......+.. .. . ..+....+..+.|++.
T Consensus 221 vris~~~-~~~~g~~~eea~~ia~~Le~~G--vd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~------- 290 (338)
T cd04733 221 IKLNSAD-FQRGGFTEEDALEVVEALEEAG--VDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKV------- 290 (338)
T ss_pred EEEcHHH-cCCCCCCHHHHHHHHHHHHHcC--CCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHH-------
Confidence 7775310 0001112334455555555555 8999986553211110 00 0 0112235666677766
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.++||++=-+. .+ ..++.+.+ .+.++|.|.+.
T Consensus 291 v~iPVi~~G~i-~t---~~~a~~~l--~~g~aD~V~lg 322 (338)
T cd04733 291 TKTPLMVTGGF-RT---RAAMEQAL--ASGAVDGIGLA 322 (338)
T ss_pred cCCCEEEeCCC-CC---HHHHHHHH--HcCCCCeeeeC
Confidence 67899874322 12 34444555 55568987544
No 452
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=93.15 E-value=2.3 Score=39.66 Aligned_cols=85 Identities=12% Similarity=0.163 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+....+++..... ++++|-+|-+. |.-.....+.-.++++.+.+.. . .++||++=++. +.++..+++
T Consensus 28 ~~l~~li~~l~~~--Gv~Gi~~~Gst----GE~~~Lt~eEr~~~~~~~~~~~---~--~~~pvi~gv~~--~t~~~i~~~ 94 (303)
T PRK03620 28 AAYREHLEWLAPY--GAAALFAAGGT----GEFFSLTPDEYSQVVRAAVETT---A--GRVPVIAGAGG--GTAQAIEYA 94 (303)
T ss_pred HHHHHHHHHHHHc--CCCEEEECcCC----cCcccCCHHHHHHHHHHHHHHh---C--CCCcEEEecCC--CHHHHHHHH
Confidence 4455555555444 49999876551 2211112333445555555442 1 47899998763 556788999
Q ss_pred HHhccccCCccEEEEecCCc
Q psy5880 200 DVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~ 219 (328)
+.+ +++|+|++.+....+
T Consensus 95 ~~a--~~~Gadav~~~pP~y 112 (303)
T PRK03620 95 QAA--ERAGADGILLLPPYL 112 (303)
T ss_pred HHH--HHhCCCEEEECCCCC
Confidence 999 999999998876654
No 453
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=93.15 E-value=2.3 Score=39.36 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+.+..+++..... +++++-++-| . |.-..-..+.-.++++.+.+.. . .++||++=++. +.++..++
T Consensus 20 ~~~l~~l~~~l~~~--Gv~gi~v~Gs--t--GE~~~Ls~eEr~~l~~~~~~~~---~--~~~pvi~gv~~--~t~~~i~~ 86 (289)
T cd00951 20 EDAYRAHVEWLLSY--GAAALFAAGG--T--GEFFSLTPDEYAQVVRAAVEET---A--GRVPVLAGAGY--GTATAIAY 86 (289)
T ss_pred HHHHHHHHHHHHHc--CCCEEEECcC--C--cCcccCCHHHHHHHHHHHHHHh---C--CCCCEEEecCC--CHHHHHHH
Confidence 34455555555544 4999987655 2 2211112223344444444442 1 47899998864 45678899
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 87 a~~a--~~~Gad~v~~~pP~y 105 (289)
T cd00951 87 AQAA--EKAGADGILLLPPYL 105 (289)
T ss_pred HHHH--HHhCCCEEEECCCCC
Confidence 9999 999999998876654
No 454
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=93.07 E-value=2 Score=45.47 Aligned_cols=158 Identities=11% Similarity=0.121 Sum_probs=81.2
Q ss_pred hhHHHHHHHhHHHHHHHhhcC-ccceEEeccC---------CCCCcCccCCC---c----hHHHHHHHHHHHHHhhhhcC
Q psy5880 34 FARMRAWVLQFWLLGILKFGD-VAHYFVVNVS---------SPNTANLRKLQ---A----KDQLKHLLKTVVETRNQLAL 96 (328)
Q Consensus 34 ~~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~s---------spN~~gl~~~~---~----~~~L~~ll~~v~~~~~~~~~ 96 (328)
.+.+. .++++|...++.... -.|.|++|.. ||.+-- ++++ . ..-+.+++++|++.. +
T Consensus 543 ~~eI~-~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~-RtD~yGGslenR~r~~~eiv~~ir~~~---~- 616 (765)
T PRK08255 543 RADMD-RVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQ-RTDEYGGSLENRLRYPLEVFRAVRAVW---P- 616 (765)
T ss_pred HHHHH-HHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCC-CCCCCCCCHHHHhHHHHHHHHHHHHhc---C-
Confidence 34443 477889888876433 2588999977 775421 2222 1 222445555555543 1
Q ss_pred CCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcC
Q psy5880 97 KPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAV 176 (328)
Q Consensus 97 ~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~ 176 (328)
...|+.+|+.+.=.. +...+.++..++++.++.++ +|+|++...+-.. .......+.....+.+.||+.
T Consensus 617 -~~~~v~~ri~~~~~~-~~g~~~~~~~~~~~~l~~~g--~d~i~vs~g~~~~-~~~~~~~~~~~~~~~~~ik~~------ 685 (765)
T PRK08255 617 -AEKPMSVRISAHDWV-EGGNTPDDAVEIARAFKAAG--ADLIDVSSGQVSK-DEKPVYGRMYQTPFADRIRNE------ 685 (765)
T ss_pred -CCCeeEEEEcccccc-CCCCCHHHHHHHHHHHHhcC--CcEEEeCCCCCCc-CCCCCcCccccHHHHHHHHHH------
Confidence 245888998762111 11112334445555555554 8999875332111 000000011223455667765
Q ss_pred CCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 177 KPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 177 ~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.++||++= .++.. ...+-+.+ .+-++|.|.+.
T Consensus 686 -~~~pv~~~--G~i~~--~~~a~~~l--~~g~~D~v~~g 717 (765)
T PRK08255 686 -AGIATIAV--GAISE--ADHVNSII--AAGRADLCALA 717 (765)
T ss_pred -cCCEEEEe--CCCCC--HHHHHHHH--HcCCcceeeEc
Confidence 67898763 33321 33444445 55669988554
No 455
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=93.05 E-value=2.8 Score=38.81 Aligned_cols=133 Identities=11% Similarity=0.135 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCC-CCEEEEeCCCCChhhHH
Q psy5880 118 IADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPL-PPILVKIAPDLSLDEKK 196 (328)
Q Consensus 118 ~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~-~Pv~vKl~~~~~~~~~~ 196 (328)
..+.+..++++|++.. ...| |.++ |..- ......+.+...+..+.+. .+ +||.+.+-.+.+ .
T Consensus 25 n~e~~~avi~aAe~~~--~PvI-l~~~-~~~~--~~~~~~~~~~~~~~~~a~~-------~~~vpv~lhlDH~~~----~ 87 (282)
T TIGR01859 25 NLEWTQAILEAAEEEN--SPVI-IQVS-EGAI--KYMGGYKMAVAMVKTLIER-------MSIVPVALHLDHGSS----Y 87 (282)
T ss_pred CHHHHHHHHHHHHHhC--CCEE-EEcC-cchh--hccCcHHHHHHHHHHHHHH-------CCCCeEEEECCCCCC----H
Confidence 4567888888888887 4433 3333 2221 1111123344444444433 56 899999876544 3
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC-CCccEE------------
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK-GKLPII------------ 263 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~-~~ipvi------------ 263 (328)
+.++.+ .++|++.|.+-..... ....++..+++.+... -+++|-
T Consensus 88 e~i~~a--i~~Gf~sVmid~s~l~---------------------~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~ 144 (282)
T TIGR01859 88 ESCIKA--IKAGFSSVMIDGSHLP---------------------FEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDG 144 (282)
T ss_pred HHHHHH--HHcCCCEEEECCCCCC---------------------HHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccc
Confidence 445556 6899998866543221 1122333333332211 013322
Q ss_pred --E-ecCCCCHHHHHHHHH-hccCeee--ehhH
Q psy5880 264 --G-VGGVFSGKDAFEKIK-AGASLVQ--IYTS 290 (328)
Q Consensus 264 --a-~GGI~s~~da~~~l~-~GAd~V~--vg~a 290 (328)
+ ....++++++.++.+ +|+|.+. +|+.
T Consensus 145 ~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~ 177 (282)
T TIGR01859 145 VDEKEAELADPDEAEQFVKETGVDYLAAAIGTS 177 (282)
T ss_pred ccccccccCCHHHHHHHHHHHCcCEEeeccCcc
Confidence 1 133789999999997 9999999 4553
No 456
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=93.05 E-value=3.6 Score=42.05 Aligned_cols=132 Identities=20% Similarity=0.227 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
++.+..|++.+...+ .|.+-+ |.+.| +-+.+..-++++++. +.....-|..=.+|-.+.+.+.++
T Consensus 95 d~vv~~~v~~a~~~G--idv~Ri-fd~ln--------d~~n~~~~i~~~k~~----G~~~~~~i~yt~sp~~t~e~~~~~ 159 (596)
T PRK14042 95 DDVVRAFVKLAVNNG--VDVFRV-FDALN--------DARNLKVAIDAIKSH----KKHAQGAICYTTSPVHTLDNFLEL 159 (596)
T ss_pred hHHHHHHHHHHHHcC--CCEEEE-cccCc--------chHHHHHHHHHHHHc----CCEEEEEEEecCCCCCCHHHHHHH
Confidence 567888888887776 777764 33333 234455556666654 211112233345777788889999
Q ss_pred HHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCch-HHHHHHHHHHHHcCCCccEEEecCCCCH---HHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRN-KSTELISEMYKLTKGKLPIIGVGGVFSG---KDA 274 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~-~~l~~v~~i~~~~~~~ipvia~GGI~s~---~da 274 (328)
++.+ .++|++.|.+..+.. +. .| ...+.++.+++.++ +||-.-+==+.+ .-.
T Consensus 160 ak~l--~~~Gad~I~IkDtaG----------------~l----~P~~v~~lv~alk~~~~--ipi~~H~Hnt~Gla~an~ 215 (596)
T PRK14042 160 GKKL--AEMGCDSIAIKDMAG----------------LL----TPTVTVELYAGLKQATG--LPVHLHSHSTSGLASICH 215 (596)
T ss_pred HHHH--HHcCCCEEEeCCccc----------------CC----CHHHHHHHHHHHHhhcC--CEEEEEeCCCCCcHHHHH
Confidence 9999 999999998766532 11 12 34577888888875 777654433333 334
Q ss_pred HHHHHhccCeeeehh
Q psy5880 275 FEKIKAGASLVQIYT 289 (328)
Q Consensus 275 ~~~l~~GAd~V~vg~ 289 (328)
.+++++|||.|-.+-
T Consensus 216 laAieaGad~iD~ai 230 (596)
T PRK14042 216 YEAVLAGCNHIDTAI 230 (596)
T ss_pred HHHHHhCCCEEEecc
Confidence 566789999887764
No 457
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=93.04 E-value=1.9 Score=40.23 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=31.1
Q ss_pred CCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 258 GKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 258 ~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
.++.|+++||| |.+.+.++.++|+|.+.+|+.+.
T Consensus 244 ~~~~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~ 277 (302)
T cd01571 244 KHVKIFVSGGL-DEEDIKELEDVGVDAFGVGTAIS 277 (302)
T ss_pred CCeEEEEeCCC-CHHHHHHHHHcCCCEEECCcccC
Confidence 35789999999 99999999999999999999875
No 458
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=93.02 E-value=2.2 Score=37.66 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+.+..+.++....+.|.||+ +.|.-. ..-.+.++.+|+.+ ++.+|.+.+-.- + .-.-.++
T Consensus 14 ~l~~Ai~~a~~v~~~~diiEv--GTpLik--------~eG~~aV~~lr~~~------pd~~IvAD~Kt~-D--~G~~e~~ 74 (217)
T COG0269 14 DLEEAIEIAEEVADYVDIIEV--GTPLIK--------AEGMRAVRALRELF------PDKIIVADLKTA-D--AGAIEAR 74 (217)
T ss_pred CHHHHHHHHHHhhhcceEEEe--CcHHHH--------HhhHHHHHHHHHHC------CCCeEEeeeeec-c--hhHHHHH
Confidence 566777777777777888984 433321 11235555666553 577888755321 1 1233467
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH-
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK- 279 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~- 279 (328)
++ .++|+|.+++++.... +.-...++..++. +. --.+=-=|++++++..+-++
T Consensus 75 ma--~~aGAd~~tV~g~A~~----------------------~TI~~~i~~A~~~-~~-~v~iDl~~~~~~~~~~~~l~~ 128 (217)
T COG0269 75 MA--FEAGADWVTVLGAADD----------------------ATIKKAIKVAKEY-GK-EVQIDLIGVWDPEQRAKWLKE 128 (217)
T ss_pred HH--HHcCCCEEEEEecCCH----------------------HHHHHHHHHHHHc-CC-eEEEEeecCCCHHHHHHHHHH
Confidence 78 8999999998874321 1112333343333 21 22233346799999999998
Q ss_pred hccCeeeehhHH
Q psy5880 280 AGASLVQIYTSF 291 (328)
Q Consensus 280 ~GAd~V~vg~a~ 291 (328)
+|.+.+.+.|+.
T Consensus 129 ~gvd~~~~H~g~ 140 (217)
T COG0269 129 LGVDQVILHRGR 140 (217)
T ss_pred hCCCEEEEEecc
Confidence 999999999876
No 459
>PRK06739 pyruvate kinase; Validated
Probab=92.96 E-value=3 Score=39.79 Aligned_cols=120 Identities=15% Similarity=0.196 Sum_probs=67.2
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHH-HHHHHHHHHc
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKST-ELISEMYKLT 256 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l-~~v~~i~~~~ 256 (328)
.+++|+.||-.....+.+.++++. +|||.+.=+-.+. -.+...-|... +.++..++ .
T Consensus 206 ~~~~IiaKIE~~~av~nl~eI~~~-------sDgimVARGDLgv--------------e~~~e~vp~~Qk~Ii~~c~~-~ 263 (352)
T PRK06739 206 TSPNLIAKIETMEAIENFQDICKE-------ADGIMIARGDLGV--------------ELPYQFIPLLQKMMIQECNR-T 263 (352)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh-------cCEEEEECccccc--------------ccCHHHHHHHHHHHHHHHHH-h
Confidence 368999999543222234444332 4888765322210 01111113222 33444444 3
Q ss_pred CCCccEEEecCC---------C---CHHHHHHHHHhccCeeeeh--hHHhhcCc----hHHHHHHHHHHHHHHHhCCCCH
Q psy5880 257 KGKLPIIGVGGV---------F---SGKDAFEKIKAGASLVQIY--TSFVYHGP----PLVTRIKSELEELLQKEGYNSV 318 (328)
Q Consensus 257 ~~~ipvia~GGI---------~---s~~da~~~l~~GAd~V~vg--~a~l~~gp----~~~~~i~~~l~~~m~~~g~~si 318 (328)
+ .|||...-+ - ...|+..++.-|||+||+. |+.- +-| .+..++.+..+.|+.. |..+.
T Consensus 264 g--kPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G-~yPveaV~~m~~I~~~aE~~~~~-~~~~~ 339 (352)
T PRK06739 264 N--TYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASG-EHPIESVSTLRLVSEFAEHVKKD-GPFVM 339 (352)
T ss_pred C--CCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCC-CCHHHHHHHHHHHHHHHHhhhcc-CchhH
Confidence 4 798865543 2 3467788889999999998 5553 225 4677888888877654 44454
Q ss_pred HHHhc
Q psy5880 319 SQAVG 323 (328)
Q Consensus 319 ~e~~G 323 (328)
.+-.+
T Consensus 340 ~~~~~ 344 (352)
T PRK06739 340 KDVLE 344 (352)
T ss_pred HHHHH
Confidence 44443
No 460
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=92.85 E-value=1.7 Score=39.71 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=32.0
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecC
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGG 267 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GG 267 (328)
++.+-++.+ +++|+++|.+-+- | -+..+++.+.++ +|+|+.|.
T Consensus 161 ~~i~~A~a~--e~AGA~~ivlE~v-------------------------p--~~~a~~It~~l~--iP~iGIGa 203 (263)
T TIGR00222 161 KLLEDALAL--EEAGAQLLVLECV-------------------------P--VELAAKITEALA--IPVIGIGA 203 (263)
T ss_pred HHHHHHHHH--HHcCCCEEEEcCC-------------------------c--HHHHHHHHHhCC--CCEEeecc
Confidence 455667777 8999999976542 1 266788889988 99998763
No 461
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=92.85 E-value=1.2 Score=43.16 Aligned_cols=67 Identities=6% Similarity=-0.036 Sum_probs=44.7
Q ss_pred cccEEEEccC-CCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEE
Q psy5880 135 VAHYFVVNVS-SPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGL 212 (328)
Q Consensus 135 ~~d~ieiN~s-cPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i 212 (328)
++..+-+.+. .|.. +. ...+.-.+.+++||++ ++ .++.|++-....++.++..++++.+ ++.++..+
T Consensus 172 Gf~~~Kik~~~g~~~-g~---~~~~~di~~v~avRea---vG--~d~~l~vDaN~~~~~~~Ai~~~~~l--e~~~l~wi 239 (394)
T PRK15440 172 GFIGGKMPLHHGPAD-GD---AGLRKNAAMVADMREK---VG--DDFWLMLDCWMSLDVNYATKLAHAC--APYGLKWI 239 (394)
T ss_pred CCCEEEEcCCcCccc-ch---HHHHHHHHHHHHHHHh---hC--CCCeEEEECCCCCCHHHHHHHHHHh--hhcCCcce
Confidence 4888877653 1221 11 1223345566666665 44 5789999988888888889999999 88877665
No 462
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=92.85 E-value=3.6 Score=38.11 Aligned_cols=81 Identities=9% Similarity=0.144 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHH
Q psy5880 118 IADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKD 197 (328)
Q Consensus 118 ~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ 197 (328)
..+.+..++++|++.. ... .|.++ |.. ......+.+..++..+.+. .++||.+-+-.+.+. +
T Consensus 27 n~e~~~avi~AAee~~--sPv-Iiq~~-~~~---~~~~g~~~~~~~~~~~A~~-------~~VPV~lHLDHg~~~----e 88 (284)
T PRK09195 27 NLETMQVVVETAAELH--SPV-IIAGT-PGT---FSYAGTEYLLAIVSAAAKQ-------YHHPLALHLDHHEKF----D 88 (284)
T ss_pred CHHHHHHHHHHHHHhC--CCE-EEEcC-hhH---HhhCCHHHHHHHHHHHHHH-------CCCCEEEECCCCCCH----H
Confidence 4567888888888877 333 33343 221 1111123445555554443 689999999877652 4
Q ss_pred HHHHhccccCCccEEEEecCC
Q psy5880 198 IADVVLDSKCKVDGLIVSNTT 218 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~ 218 (328)
.++.+ .++|++.|.+-+..
T Consensus 89 ~i~~A--i~~GftSVM~DgS~ 107 (284)
T PRK09195 89 DIAQK--VRSGVRSVMIDGSH 107 (284)
T ss_pred HHHHH--HHcCCCEEEeCCCC
Confidence 45666 68999998766543
No 463
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=92.84 E-value=3.7 Score=38.03 Aligned_cols=132 Identities=8% Similarity=0.103 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhh
Q psy5880 115 KKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDE 194 (328)
Q Consensus 115 n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~ 194 (328)
|....+.+..++++|++.. .-+.|+++ ++.......+.+..++..+.+. .++||.+=+-.+.+
T Consensus 24 N~~n~e~~~avi~AAee~~---sPvIiq~~----~~~~~~~g~~~~~~~~~~~a~~-------~~VPValHLDH~~~--- 86 (284)
T PRK12737 24 NIHNLETLQVVVETAAELR---SPVILAGT----PGTFSYAGTDYIVAIAEVAARK-------YNIPLALHLDHHED--- 86 (284)
T ss_pred EeCCHHHHHHHHHHHHHhC---CCEEEEcC----ccHHhhCCHHHHHHHHHHHHHH-------CCCCEEEECCCCCC---
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC----------CCccEEE
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK----------GKLPIIG 264 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~----------~~ipvia 264 (328)
.+.+..+ .++|++.|.+-+.... ...+++..+++.+... +.+. -.
T Consensus 87 -~e~i~~a--i~~GftSVMiDgS~lp---------------------~eeNi~~T~~vv~~Ah~~gvsVEaElG~ig-g~ 141 (284)
T PRK12737 87 -LDDIKKK--VRAGIRSVMIDGSHLS---------------------FEENIAIVKEVVEFCHRYDASVEAELGRLG-GQ 141 (284)
T ss_pred -HHHHHHH--HHcCCCeEEecCCCCC---------------------HHHHHHHHHHHHHHHHHcCCEEEEEEeecc-Cc
Q ss_pred ecC---------CCCHHHHHHHHH-hccCeeeeh
Q psy5880 265 VGG---------VFSGKDAFEKIK-AGASLVQIY 288 (328)
Q Consensus 265 ~GG---------I~s~~da~~~l~-~GAd~V~vg 288 (328)
.+| .++|+++.++++ +|+|+..++
T Consensus 142 e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAva 175 (284)
T PRK12737 142 EDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVA 175 (284)
T ss_pred cCCcccccccccCCCHHHHHHHHHHhCCCEEeec
No 464
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=92.79 E-value=3.5 Score=39.15 Aligned_cols=155 Identities=10% Similarity=0.091 Sum_probs=81.2
Q ss_pred CChhhHHHHHHHhHHHHHHHhhcC-ccceEEeccCC---------CCCcCccC------CCch-HHHHHHHHHHHHHhhh
Q psy5880 31 LSSFARMRAWVLQFWLLGILKFGD-VAHYFVVNVSS---------PNTANLRK------LQAK-DQLKHLLKTVVETRNQ 93 (328)
Q Consensus 31 ~~~~~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~ss---------pN~~gl~~------~~~~-~~L~~ll~~v~~~~~~ 93 (328)
....+.+. .++++|...++.+.. -.|.|++|..+ |.+.- ++ +.+. .-+.+++++|++.-
T Consensus 141 ~mt~~eI~-~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~-R~D~yGGslenR~rf~~eii~air~~v-- 216 (338)
T cd02933 141 ALTTEEIP-GIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNK-RTDEYGGSIENRARFLLEVVDAVAEAI-- 216 (338)
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCC-CCCcCCCcHHHhhhHHHHHHHHHHHHh--
Confidence 33344554 677889888876443 24888888655 53321 22 2222 22456666666543
Q ss_pred hcCCCCCcchhcccCCccccc--ccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q psy5880 94 LALKPLPPILVKIAPDLSLDE--KKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETR 171 (328)
Q Consensus 94 ~~~~~~~Pv~vki~~~l~~~~--n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~ 171 (328)
+ .. |+.+|+.++=.+.. ...+.++..++++.++..+ +|+|++........ . +....+..+.|++.
T Consensus 217 -g--~d-~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g--~d~i~vs~g~~~~~--~----~~~~~~~~~~ik~~- 283 (338)
T cd02933 217 -G--AD-RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRG--LAYLHLVEPRVAGN--P----EDQPPDFLDFLRKA- 283 (338)
T ss_pred -C--CC-ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcC--CcEEEEecCCCCCc--c----cccchHHHHHHHHH-
Confidence 2 12 68888865311110 0012233444555554444 89998633221110 0 23345667777776
Q ss_pred HhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 172 NQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 172 ~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.++||++= ..++ ...+.+.+ .+.++|+|.+.
T Consensus 284 ------~~ipvi~~--G~i~---~~~a~~~l--~~g~~D~V~~g 314 (338)
T cd02933 284 ------FKGPLIAA--GGYD---AESAEAAL--ADGKADLVAFG 314 (338)
T ss_pred ------cCCCEEEE--CCCC---HHHHHHHH--HcCCCCEEEeC
Confidence 67898873 3344 23344445 45569988654
No 465
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=92.73 E-value=6.3 Score=36.54 Aligned_cols=85 Identities=11% Similarity=0.151 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+....+++-.... ++|++-++-+ . |.-..-..+.-.++++.+.+.. . .++||++=++. +.++..+++
T Consensus 26 ~~l~~li~~l~~~--Gv~gi~v~Gs--t--GE~~~Lt~eEr~~v~~~~~~~~---~--g~~pvi~gv~~--~t~~ai~~a 92 (296)
T TIGR03249 26 AAYRENIEWLLGY--GLEALFAAGG--T--GEFFSLTPAEYEQVVEIAVSTA---K--GKVPVYTGVGG--NTSDAIEIA 92 (296)
T ss_pred HHHHHHHHHHHhc--CCCEEEECCC--C--cCcccCCHHHHHHHHHHHHHHh---C--CCCcEEEecCc--cHHHHHHHH
Confidence 4455555555544 4999987644 1 2211112233445555554442 1 46899998874 355788999
Q ss_pred HHhccccCCccEEEEecCCc
Q psy5880 200 DVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~ 219 (328)
+.+ +++|+|++.+....+
T Consensus 93 ~~a--~~~Gadav~~~pP~y 110 (296)
T TIGR03249 93 RLA--EKAGADGYLLLPPYL 110 (296)
T ss_pred HHH--HHhCCCEEEECCCCC
Confidence 999 999999998876654
No 466
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=92.71 E-value=2.8 Score=37.64 Aligned_cols=140 Identities=13% Similarity=0.129 Sum_probs=78.2
Q ss_pred HhHHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHH
Q psy5880 42 LQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADV 121 (328)
Q Consensus 42 l~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~ 121 (328)
++||.+ ..+++.|++..-. |-..+...+.|++.++..|+++- + +.++-++.+.......
T Consensus 14 ~~d~Le---~~g~yID~lKfg~------Gt~~l~~~~~l~eki~la~~~~V--------~----v~~GGtl~E~~~~q~~ 72 (237)
T TIGR03849 14 VEDYLK---VCGDYITFVKFGW------GTSALIDRDIVKEKIEMYKDYGI--------K----VYPGGTLFEIAHSKGK 72 (237)
T ss_pred HHHHHH---HhhhheeeEEecC------ceEeeccHHHHHHHHHHHHHcCC--------e----EeCCccHHHHHHHhhh
Confidence 345544 4455666665432 33344455678988888887752 2 2244333333233467
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC---CCChhhHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP---DLSLDEKKDI 198 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~---~~~~~~~~~~ 198 (328)
+++|.+.++..+ ++.|||+-+.-.. ..+...++++.+++. .+- +..-+..|-.. ..+.++..+.
T Consensus 73 ~~~Yl~~~k~lG--f~~IEiS~G~~~i-------~~~~~~rlI~~~~~~--g~~--v~~EvG~K~~~~~~~~~~~~~i~~ 139 (237)
T TIGR03849 73 FDEYLNECDELG--FEAVEISDGSMEI-------SLEERCNLIERAKDN--GFM--VLSEVGKKSPEKDSELTPDDRIKL 139 (237)
T ss_pred HHHHHHHHHHcC--CCEEEEcCCccCC-------CHHHHHHHHHHHHhC--CCe--EeccccccCCcccccCCHHHHHHH
Confidence 888999999888 9999986543111 112334444444432 000 01112223221 1455567777
Q ss_pred HHHhccccCCccEEEEecC
Q psy5880 199 ADVVLDSKCKVDGLIVSNT 217 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~ 217 (328)
++.. .++||+.|.+=++
T Consensus 140 ~~~~--LeAGA~~ViiEar 156 (237)
T TIGR03849 140 INKD--LEAGADYVIIEGR 156 (237)
T ss_pred HHHH--HHCCCcEEEEeeh
Confidence 7777 8999999988664
No 467
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=92.65 E-value=6 Score=36.67 Aligned_cols=79 Identities=27% Similarity=0.315 Sum_probs=57.6
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH-HH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG-KD 273 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~-~d 273 (328)
+.+..+.+ .+-|+|.+-++-++. .|-|.|.|. +.++.+++|++.++ +|++.-||=..+ ++
T Consensus 158 peea~~Fv--~~TgvD~LAvaiGt~-------------HG~Y~~~p~--Ld~~~L~~I~~~~~--vPLVLHGgSG~~~e~ 218 (286)
T PRK08610 158 PKECQELV--EKTGIDALAPALGSV-------------HGPYKGEPK--LGFKEMEEIGLSTG--LPLVLHGGTGIPTKD 218 (286)
T ss_pred HHHHHHHH--HHHCCCEEEeecccc-------------ccccCCCCC--CCHHHHHHHHHHHC--CCEEEeCCCCCCHHH
Confidence 44444555 667999987764332 244555432 35678889999886 999999998888 66
Q ss_pred HHHHHHhccCeeeehhHHh
Q psy5880 274 AFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l 292 (328)
+.+++..|..=|=++|.+.
T Consensus 219 ~~~ai~~GI~KiNi~T~l~ 237 (286)
T PRK08610 219 IQKAIPFGTAKINVNTENQ 237 (286)
T ss_pred HHHHHHCCCeEEEeccHHH
Confidence 7789999988899998773
No 468
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=92.63 E-value=0.69 Score=41.98 Aligned_cols=128 Identities=14% Similarity=0.147 Sum_probs=76.6
Q ss_pred CCEEEEeCCC--CChhhHHHHHHHhccccCCcc----EEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHH
Q psy5880 180 PPILVKIAPD--LSLDEKKDIADVVLDSKCKVD----GLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMY 253 (328)
Q Consensus 180 ~Pv~vKl~~~--~~~~~~~~~a~~l~~~~~G~d----~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~ 253 (328)
-|+++=-.|. .+.+++.++|+.+ ++.|+. ++--+ .+. +. .......+.|+.+ ..+|+++++++
T Consensus 9 ~~~~~iAGPC~vEs~e~~~~~A~~l--k~~~~~~~~~~~fK~-sf~------Ka-pRTSp~sFqG~G~-eeGL~~L~~vk 77 (264)
T PRK05198 9 LPFFLIAGPCVIESRDLALRIAEHL--KEITDKLGIPYVFKA-SFD------KA-NRSSIHSFRGPGL-EEGLKILQEVK 77 (264)
T ss_pred CceEEEecCCcccCHHHHHHHHHHH--HHHHHhcCCCeEEec-ccc------CC-CCCCCCCCCCCCh-HHHHHHHHHHH
Confidence 3554444454 2445688888888 775543 22111 000 00 0011233455432 35789999999
Q ss_pred HHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhC-CCCHHHHhcc
Q psy5880 254 KLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEG-YNSVSQAVGA 324 (328)
Q Consensus 254 ~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g-~~si~e~~G~ 324 (328)
+.++ +||+. -|++++++..+.+. +|.+|||.-++. +.++++.+.+--+-.+-++| +-+++|+.+.
T Consensus 78 ~~~G--lpvvT--eV~~~~~~~~v~~~-~DilQIgArn~r-n~~LL~a~g~t~kpV~lKrG~~~t~~e~~~a 143 (264)
T PRK05198 78 ETFG--VPVLT--DVHEPEQAAPVAEV-VDVLQIPAFLCR-QTDLLVAAAKTGKVVNIKKGQFLAPWDMKNV 143 (264)
T ss_pred HHHC--CceEE--EeCCHHHHHHHHhh-CcEEEECchhcc-hHHHHHHHhccCCeEEecCCCcCCHHHHHHH
Confidence 9987 99987 79999999999888 999999988774 36665555332122222222 4455555543
No 469
>KOG0623|consensus
Probab=92.59 E-value=0.28 Score=45.86 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=62.6
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..++.+++ ++.|+.-|.+-.-... |.-+| +.+++++.++..++ ||||++-|-.+|++.
T Consensus 443 v~ELtrAc--EalGAGEiLLNCiD~D-------------Gsn~G-----yDieLv~lvkdsV~--IPVIASSGAG~P~HF 500 (541)
T KOG0623|consen 443 VFELTRAC--EALGAGEILLNCIDCD-------------GSNKG-----YDIELVKLVKDSVG--IPVIASSGAGTPDHF 500 (541)
T ss_pred hhhHHHHH--HHhCcchheeeeeccC-------------CCCCC-----cchhHHHHhhcccC--CceEecCCCCCcHHH
Confidence 56788888 7778766543221110 11222 34689999999998 999999999999999
Q ss_pred HHHHH-hccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 275 FEKIK-AGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 275 ~~~l~-~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
.+.++ +.||+.. +.+++.++---++.. ++||..|++
T Consensus 501 eEvF~kT~adAaL-aAGiFHR~e~~i~dV----KEyL~eh~i 537 (541)
T KOG0623|consen 501 EEVFEKTNADAAL-AAGIFHRKEVPIQDV----KEYLQEHRI 537 (541)
T ss_pred HHHHHhcCchhhh-hccceecCccchHHH----HHHHHhhce
Confidence 99876 6788654 555543433334444 567777765
No 470
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=92.48 E-value=8.7 Score=35.42 Aligned_cols=178 Identities=19% Similarity=0.163 Sum_probs=91.5
Q ss_pred CcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEc-cCCC
Q psy5880 68 TANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVN-VSSP 146 (328)
Q Consensus 68 ~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN-~scP 146 (328)
+.|+++.+... +.+++..+++.-.. ...|+++.+=-+ .- ....+.+.+..+.+++ +.++.|- -.-|
T Consensus 52 slG~pD~~~~t-~~e~~~~vrrI~~a----~~lPv~vD~dtG----fG--~~~nvartV~~~~~aG--~agi~iEDq~~p 118 (289)
T COG2513 52 SLGLPDLGITT-LDEVLADARRITDA----VDLPVLVDIDTG----FG--EALNVARTVRELEQAG--AAGIHIEDQVGP 118 (289)
T ss_pred hcCCCcccccc-HHHHHHHHHHHHhh----cCCceEEeccCC----CC--cHHHHHHHHHHHHHcC--cceeeeeecccc
Confidence 67888876433 77777776655432 235666543222 11 1234555555555555 6655441 1112
Q ss_pred CCcchhh---hhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC--CChhhHHHHHHHhccccCCccEEEEecCCccc
Q psy5880 147 NTANLRK---LQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD--LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDR 221 (328)
Q Consensus 147 n~~g~~~---~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~--~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~ 221 (328)
-..|++. .-..+...+-+++++++++ ..++-|+.+.-.. -..++..+=++.. .++|+|+|-..+..
T Consensus 119 k~cgh~~gk~l~~~~e~v~rIkAa~~a~~----~~~fvi~ARTda~~~~~ld~AI~Ra~AY--~eAGAD~if~~al~--- 189 (289)
T COG2513 119 KRCGHLPGKELVSIDEMVDRIKAAVEARR----DPDFVIIARTDALLVEGLDDAIERAQAY--VEAGADAIFPEALT--- 189 (289)
T ss_pred hhcCCCCCCCcCCHHHHHHHHHHHHHhcc----CCCeEEEeehHHHHhccHHHHHHHHHHH--HHcCCcEEccccCC---
Confidence 2112211 1123344444555555431 1233334443221 1124455666777 89999999533211
Q ss_pred hhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEe---cCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 222 YEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGV---GGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 222 ~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~---GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
..+.++++.+.++ +|+.++ .|-+-.-++.++-++|.+.|..+-..+
T Consensus 190 -----------------------~~e~i~~f~~av~--~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~~~~~~~ 238 (289)
T COG2513 190 -----------------------DLEEIRAFAEAVP--VPLPANITEFGKTPLLTVAELAELGVKRVSYGLTAF 238 (289)
T ss_pred -----------------------CHHHHHHHHHhcC--CCeeeEeeccCCCCCcCHHHHHhcCceEEEECcHHH
Confidence 1466788888876 554432 343333445666679999998885443
No 471
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=92.45 E-value=6.8 Score=36.36 Aligned_cols=87 Identities=10% Similarity=0.059 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+.+..+++..... ++++|-++-+. |.-.....+.-.++++.+.+..+ .++||++=++... .++..++
T Consensus 20 ~~~l~~lv~~~~~~--Gv~gi~v~Gst----GE~~~Ls~~Er~~l~~~~~~~~~-----g~~pvi~gv~~~~-t~~ai~~ 87 (294)
T TIGR02313 20 EEALRELIEFQIEG--GSHAISVGGTS----GEPGSLTLEERKQAIENAIDQIA-----GRIPFAPGTGALN-HDETLEL 87 (294)
T ss_pred HHHHHHHHHHHHHc--CCCEEEECccC----cccccCCHHHHHHHHHHHHHHhC-----CCCcEEEECCcch-HHHHHHH
Confidence 34555555555544 48998875442 22111122334455555444421 4689998877643 3467889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ ++.|+|++.+....+
T Consensus 88 a~~A--~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 88 TKFA--EEAGADAAMVIVPYY 106 (294)
T ss_pred HHHH--HHcCCCEEEEcCccC
Confidence 9999 999999998876644
No 472
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=92.44 E-value=5.2 Score=37.06 Aligned_cols=133 Identities=11% Similarity=0.110 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhh
Q psy5880 115 KKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDE 194 (328)
Q Consensus 115 n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~ 194 (328)
|....+.+..++++|++.+ .-+.|+++ ++.......+.+..++..+.+. .++||.+-+-.+.+
T Consensus 24 N~~n~e~~~avi~AAee~~---sPvIlq~s----~~~~~~~~~~~~~~~~~~~a~~-------~~VPValHLDHg~~--- 86 (286)
T PRK12738 24 NIHNAETIQAILEVCSEMR---SPVILAGT----PGTFKHIALEEIYALCSAYSTT-------YNMPLALHLDHHES--- 86 (286)
T ss_pred EeCCHHHHHHHHHHHHHHC---CCEEEEcC----cchhhhCCHHHHHHHHHHHHHH-------CCCCEEEECCCCCC---
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC-----CccEEEecC--
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG-----KLPIIGVGG-- 267 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~-----~ipvia~GG-- 267 (328)
.+.++.+ .++|++.|.+-+.... ...+++..+++.+.... +-.|=-+||
T Consensus 87 -~e~i~~a--i~~GFtSVM~DgS~lp---------------------~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~e 142 (286)
T PRK12738 87 -LDDIRRK--VHAGVRSAMIDGSHFP---------------------FAENVKLVKSVVDFCHSQDCSVEAELGRLGGVE 142 (286)
T ss_pred -HHHHHHH--HHcCCCeEeecCCCCC---------------------HHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCcc
Q ss_pred -----------CCCHHHHHHHHH-hccCeeeeh
Q psy5880 268 -----------VFSGKDAFEKIK-AGASLVQIY 288 (328)
Q Consensus 268 -----------I~s~~da~~~l~-~GAd~V~vg 288 (328)
.++|+++.++.+ +|+|+..++
T Consensus 143 d~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 175 (286)
T PRK12738 143 DDMSVDAESAFLTDPQEAKRFVELTGVDSLAVA 175 (286)
T ss_pred CCcccccchhcCCCHHHHHHHHHHhCCCEEEec
No 473
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=92.41 E-value=0.73 Score=42.18 Aligned_cols=103 Identities=18% Similarity=0.188 Sum_probs=68.3
Q ss_pred CCEEEEeCCC--CChhhHHHHHHHhc--cccCCccEEEEe-----cCCccchhhhccccccccCCCCCCcCchHHHHHHH
Q psy5880 180 PPILVKIAPD--LSLDEKKDIADVVL--DSKCKVDGLIVS-----NTTVDRYEYLDARYKEETGGLSGEPLRNKSTELIS 250 (328)
Q Consensus 180 ~Pv~vKl~~~--~~~~~~~~~a~~l~--~~~~G~d~i~~~-----n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~ 250 (328)
.|+++=-.|. .+.+++.++|+.+. ..+.|+..+--+ ||+. ...+.|+.+ ..+|++++
T Consensus 15 ~~~~~iaGPCsvEs~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTS-------------p~sFqG~G~-eeGL~iL~ 80 (281)
T PRK12457 15 LPFVLFGGINVLESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSS-------------IHSYRGVGL-DEGLRIFE 80 (281)
T ss_pred CceEEEecCCcccCHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCC-------------CCCCCCCCH-HHHHHHHH
Confidence 3555444454 24456777777761 035888764221 2221 123455442 35789999
Q ss_pred HHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHH
Q psy5880 251 EMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 251 ~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i 302 (328)
++++.++ +||+. -|++.+++..+.+. +|.+|||.-++. +.++...+
T Consensus 81 ~vk~~~G--lpvvT--eV~~~~~~~~~ae~-vDilQIgAr~~r-ntdLL~a~ 126 (281)
T PRK12457 81 EVKARFG--VPVIT--DVHEVEQAAPVAEV-ADVLQVPAFLAR-QTDLVVAI 126 (281)
T ss_pred HHHHHHC--CceEE--EeCCHHHHHHHhhh-CeEEeeCchhhc-hHHHHHHH
Confidence 9999988 99987 89999999999888 999999987764 35555444
No 474
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=92.39 E-value=9.8 Score=35.81 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=57.0
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCc---CchHHHHHHHHHHHHcCCCccEEEecCCCCH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEP---LRNKSTELISEMYKLTKGKLPIIGVGGVFSG 271 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~---~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~ 271 (328)
..+..+.+ .+-|+|.+.++.++. .|.|.+.+ ...+.++.+++|++.++ ++|++.-||=..+
T Consensus 166 peeA~~Fv--~~TgvD~LAvaiGt~-------------HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~ 229 (321)
T PRK07084 166 PEEVEDFV--KKTGVDSLAISIGTS-------------HGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVP 229 (321)
T ss_pred HHHHHHHH--HHhCCCEEeeccccc-------------cccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCc
Confidence 44555555 667999987764432 23343311 11245788999999983 3999999987444
Q ss_pred ----------------------HHHHHHHHhccCeeeehhHHh
Q psy5880 272 ----------------------KDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 272 ----------------------~da~~~l~~GAd~V~vg~a~l 292 (328)
+++.++++.|..=|=++|.+.
T Consensus 230 ~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~ 272 (321)
T PRK07084 230 QEYVKTINEYGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDGR 272 (321)
T ss_pred HHHHHHHHHhcCccccCCCCCHHHHHHHHHcCCceeccchHHH
Confidence 889999999988899999774
No 475
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=92.38 E-value=2.3 Score=36.61 Aligned_cols=101 Identities=15% Similarity=0.076 Sum_probs=59.2
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
+++.+.+.. ++. +.....+.+..++..++. .+.|+++- + -.+.+ .+.|++|+++
T Consensus 26 g~~~v~lR~--~~~-------~~~~~~~~~~~l~~~~~~----~~~~l~i~-----~------~~~la--~~~g~~GvHl 79 (196)
T TIGR00693 26 GVTLVQLRD--KGS-------NTRERLALAEKLQELCRR----YGVPFIVN-----D------RVDLA--LALGADGVHL 79 (196)
T ss_pred CCCEEEEec--CCC-------CHHHHHHHHHHHHHHHHH----hCCeEEEE-----C------HHHHH--HHcCCCEEec
Confidence 478886533 221 122344455555555432 46788873 1 13445 6789999987
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
...... ...+++.... ..+....++|.+++.++.+.|+|.|.++.-+
T Consensus 80 ~~~~~~----------------------------~~~~r~~~~~--~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~ 126 (196)
T TIGR00693 80 GQDDLP----------------------------ASEARALLGP--DKIIGVSTHNLEELAEAEAEGADYIGFGPIF 126 (196)
T ss_pred CcccCC----------------------------HHHHHHhcCC--CCEEEEeCCCHHHHHHHhHcCCCEEEECCcc
Confidence 632110 1223333331 2234457999999999999999999986543
No 476
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=92.37 E-value=6.7 Score=36.19 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHh-cccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHH
Q psy5880 119 ADVVLDSVKGILKF-GDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKD 197 (328)
Q Consensus 119 ~~~i~~~~~~a~~~-~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ 197 (328)
.+....+++-.... + ++++-++-+ . |....-..+.-.++++.+.+.. . .++||++=++.. +.++..+
T Consensus 20 ~~~~~~~i~~l~~~~G--v~gi~~~Gs--t--GE~~~Lt~~Er~~~~~~~~~~~---~--~~~~viagv~~~-~~~~ai~ 87 (288)
T cd00954 20 EDVLRAIVDYLIEKQG--VDGLYVNGS--T--GEGFLLSVEERKQIAEIVAEAA---K--GKVTLIAHVGSL-NLKESQE 87 (288)
T ss_pred HHHHHHHHHHHHhcCC--CCEEEECcC--C--cCcccCCHHHHHHHHHHHHHHh---C--CCCeEEeccCCC-CHHHHHH
Confidence 35566666666555 5 899877654 1 2211112233445555554442 1 468999977654 3456889
Q ss_pred HHHHhccccCCccEEEEecCCc
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~ 219 (328)
+++.+ +++|+|++.+....+
T Consensus 88 ~a~~a--~~~Gad~v~~~~P~y 107 (288)
T cd00954 88 LAKHA--EELGYDAISAITPFY 107 (288)
T ss_pred HHHHH--HHcCCCEEEEeCCCC
Confidence 99999 999999998765543
No 477
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=92.28 E-value=5.1 Score=36.94 Aligned_cols=86 Identities=12% Similarity=0.154 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+....+++-.... +++++-++-+ . |.-.....+.-.++++.+.+.. . .++||++=++.. +.++..+++
T Consensus 19 ~~~~~~i~~l~~~--Gv~Gi~~~Gs--t--GE~~~Ls~~Er~~~~~~~~~~~---~--~~~~vi~gv~~~-s~~~~i~~a 86 (285)
T TIGR00674 19 AALEKLIDFQIEN--GTDAIVVVGT--T--GESPTLSHEEHKKVIEFVVDLV---N--GRVPVIAGTGSN-ATEEAISLT 86 (285)
T ss_pred HHHHHHHHHHHHc--CCCEEEECcc--C--cccccCCHHHHHHHHHHHHHHh---C--CCCeEEEeCCCc-cHHHHHHHH
Confidence 4455555544443 4999986544 1 2211112233344455444442 1 468999887664 345688999
Q ss_pred HHhccccCCccEEEEecCCc
Q psy5880 200 DVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~ 219 (328)
+.+ +++|+|++.+....+
T Consensus 87 ~~a--~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 87 KFA--EDVGADGFLVVTPYY 104 (285)
T ss_pred HHH--HHcCCCEEEEcCCcC
Confidence 999 999999998876543
No 478
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=92.20 E-value=3 Score=38.59 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHH-hcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHH
Q psy5880 119 ADVVLDSVKGILK-FGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKD 197 (328)
Q Consensus 119 ~~~i~~~~~~a~~-~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ 197 (328)
.+.+..+++-... .+ +++|-++-+ . |.-..-..+.-.++++.+.+.. . .++||++=++.. +.++..+
T Consensus 23 ~~~~~~li~~l~~~~G--v~gi~v~Gs--t--GE~~~Ls~eEr~~~~~~~~~~~---~--~~~~viagvg~~-~t~~ai~ 90 (293)
T PRK04147 23 EQGLRRLVRFNIEKQG--IDGLYVGGS--T--GEAFLLSTEEKKQVLEIVAEEA---K--GKVKLIAQVGSV-NTAEAQE 90 (293)
T ss_pred HHHHHHHHHHHHhcCC--CCEEEECCC--c--cccccCCHHHHHHHHHHHHHHh---C--CCCCEEecCCCC-CHHHHHH
Confidence 3455555555554 44 899887554 2 2211112233445555555543 1 468999977654 3457889
Q ss_pred HHHHhccccCCccEEEEecCCc
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~ 219 (328)
+++.+ +++|+|++.+....+
T Consensus 91 ~a~~a--~~~Gad~v~v~~P~y 110 (293)
T PRK04147 91 LAKYA--TELGYDAISAVTPFY 110 (293)
T ss_pred HHHHH--HHcCCCEEEEeCCcC
Confidence 99999 999999999887654
No 479
>PRK15452 putative protease; Provisional
Probab=92.19 E-value=4.9 Score=39.65 Aligned_cols=82 Identities=16% Similarity=0.005 Sum_probs=55.4
Q ss_pred CCCCEEEEeCCCCChhh---HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHH
Q psy5880 178 PLPPILVKIAPDLSLDE---KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYK 254 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~---~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~ 254 (328)
.++.+.+.+......++ +.+..+.+ .+.|+|+|.+.+- ..+..+++
T Consensus 58 ~g~kvyvt~n~i~~e~el~~~~~~l~~l--~~~gvDgvIV~d~-----------------------------G~l~~~ke 106 (443)
T PRK15452 58 LGKKFYVVVNIAPHNAKLKTFIRDLEPV--IAMKPDALIMSDP-----------------------------GLIMMVRE 106 (443)
T ss_pred cCCEEEEEecCcCCHHHHHHHHHHHHHH--HhCCCCEEEEcCH-----------------------------HHHHHHHH
Confidence 46788888765544434 44455666 7899999988862 23444555
Q ss_pred HcCCCccEEEec--CCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 255 LTKGKLPIIGVG--GVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 255 ~~~~~ipvia~G--GI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
..+ ++||.++- .|++...+..+.+.|++.|.+.+-+
T Consensus 107 ~~p-~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrEL 144 (443)
T PRK15452 107 HFP-EMPIHLSVQANAVNWATVKFWQQMGLTRVILSREL 144 (443)
T ss_pred hCC-CCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcC
Confidence 442 36777655 4688888888888888888888765
No 480
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.14 E-value=1.5 Score=37.95 Aligned_cols=80 Identities=23% Similarity=0.239 Sum_probs=57.8
Q ss_pred CEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCc
Q psy5880 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKL 260 (328)
Q Consensus 181 Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~i 260 (328)
|++.=++.. +.++..++++.+ .+.|+..|-+...+.. ..+.++.+++..+ .
T Consensus 13 ~~~~v~r~~-~~~~~~~~~~~~--~~~Gv~~vqlr~k~~~------------------------~~e~~~~~~~~~~--~ 63 (187)
T PRK07455 13 RAIAVIRAP-DLELGLQMAEAV--AAGGMRLIEITWNSDQ------------------------PAELISQLREKLP--E 63 (187)
T ss_pred CEEEEEEcC-CHHHHHHHHHHH--HHCCCCEEEEeCCCCC------------------------HHHHHHHHHHhCC--C
Confidence 444444443 456788899999 8999999877643321 2466666766654 5
Q ss_pred cEEEecCCCCHHHHHHHHHhccCeeeehh
Q psy5880 261 PIIGVGGVFSGKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 261 pvia~GGI~s~~da~~~l~~GAd~V~vg~ 289 (328)
-.++.|-+.+.+++..++++|||.|.++.
T Consensus 64 ~~~g~gtvl~~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 64 CIIGTGTILTLEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred cEEeEEEEEcHHHHHHHHHcCCCEEECCC
Confidence 56888999999999999999999995443
No 481
>PLN02623 pyruvate kinase
Probab=92.11 E-value=7.4 Score=39.57 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHH
Q psy5880 118 IADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKD 197 (328)
Q Consensus 118 ~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ 197 (328)
++.+++++.-++ ..+ +|+|-+-|- +..++-..+.++++. . + .+..+++||-. .+.+..
T Consensus 277 TekD~~di~f~~-~~~--vD~ialSFV-------r~a~DV~~~r~~l~~---~----~--~~~~iiakIEt---~eaVeN 334 (581)
T PLN02623 277 TEKDWEDIKFGV-ENK--VDFYAVSFV-------KDAQVVHELKDYLKS---C----N--ADIHVIVKIES---ADSIPN 334 (581)
T ss_pred CHHHHHHHHHHH-HcC--CCEEEECCC-------CCHHHHHHHHHHHHH---c----C--CcceEEEEECC---HHHHHh
Confidence 456677754333 333 899875333 222232333333322 1 1 46789999854 223444
Q ss_pred HHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHH-HHHHHHHHHcCCCccEEEec---------C
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKST-ELISEMYKLTKGKLPIIGVG---------G 267 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l-~~v~~i~~~~~~~ipvia~G---------G 267 (328)
+-+.+ . |+|+|.+.-.-.+. + -|.+.-+... +.++.+++ .+ .|++... .
T Consensus 335 ldeIl--~--g~DgImIgrgDLgv----------e----lg~~~v~~~qk~Ii~~~~~-~g--KpvivaTQMLESMi~~~ 393 (581)
T PLN02623 335 LHSII--T--ASDGAMVARGDLGA----------E----LPIEEVPLLQEEIIRRCRS-MG--KPVIVATNMLESMIVHP 393 (581)
T ss_pred HHHHH--H--hCCEEEECcchhhh----------h----cCcHHHHHHHHHHHHHHHH-hC--CCEEEECchhhhcccCC
Confidence 44444 3 89999665322210 0 1112222222 23333333 33 7888654 3
Q ss_pred CCC---HHHHHHHHHhccCeeeehh--HHhhcCc----hHHHHHHHHHHHH
Q psy5880 268 VFS---GKDAFEKIKAGASLVQIYT--SFVYHGP----PLVTRIKSELEEL 309 (328)
Q Consensus 268 I~s---~~da~~~l~~GAd~V~vg~--a~l~~gp----~~~~~i~~~l~~~ 309 (328)
.-| ..|+..++..|+|+|+++. ++- +-| .+..+|....+.+
T Consensus 394 ~PTRAEv~Dva~av~dG~d~vmLs~Eta~G-~yPveaV~~m~~I~~~aE~~ 443 (581)
T PLN02623 394 TPTRAEVSDIAIAVREGADAVMLSGETAHG-KFPLKAVKVMHTVALRTEAT 443 (581)
T ss_pred CCCchhHHHHHHHHHcCCCEEEecchhhcC-cCHHHHHHHHHHHHHHHHhh
Confidence 322 3699999999999999994 442 224 3566666666654
No 482
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=92.09 E-value=2.5 Score=36.72 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHhccCeeeehh
Q psy5880 267 GVFSGKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 267 GI~s~~da~~~l~~GAd~V~vg~ 289 (328)
.++|.+++.++...|||.|.++.
T Consensus 110 ~~~t~~e~~~a~~~gaD~v~~~~ 132 (212)
T PRK00043 110 STHTLEEAAAALAAGADYVGVGP 132 (212)
T ss_pred eCCCHHHHHHHhHcCCCEEEECC
Confidence 35799999999999999999874
No 483
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=92.07 E-value=1.3 Score=41.80 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=59.9
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHH-cCCCccEEEecCCCCHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKL-TKGKLPIIGVGGVFSGK 272 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~-~~~~ipvia~GGI~s~~ 272 (328)
+..++|+.. +++|+++|.+-.-.. .+.| +++.++++|+. ++ +||.--==|-++-
T Consensus 140 dp~~iA~~Y--e~~GA~aISVLTd~~---------------~F~G------s~e~L~~vr~~~v~--lPvLrKDFIID~y 194 (338)
T PLN02460 140 DPVEIAQAY--EKGGAACLSVLTDEK---------------YFQG------SFENLEAIRNAGVK--CPLLCKEFIVDAW 194 (338)
T ss_pred CHHHHHHHH--HhCCCcEEEEecCcC---------------cCCC------CHHHHHHHHHcCCC--CCEeeccccCCHH
Confidence 478899999 999999997753210 1222 25788899997 77 9999988899999
Q ss_pred HHHHHHHhccCeeeehhHHh
Q psy5880 273 DAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 273 da~~~l~~GAd~V~vg~a~l 292 (328)
++.++..+|||+|-+=-++|
T Consensus 195 QI~eAr~~GADAVLLIaaiL 214 (338)
T PLN02460 195 QIYYARSKGADAILLIAAVL 214 (338)
T ss_pred HHHHHHHcCCCcHHHHHHhC
Confidence 99999999999999888876
No 484
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=92.05 E-value=5.6 Score=36.84 Aligned_cols=133 Identities=10% Similarity=0.167 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhh
Q psy5880 115 KKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDE 194 (328)
Q Consensus 115 n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~ 194 (328)
|....+.+..++++|++.. .-+.|+++ ++.......+.+..++..+.+. .++||.+-+-.+.+
T Consensus 24 Nv~n~e~~~avi~AAee~~---sPvIlq~~----~~~~~~~g~~~~~~~~~~~A~~-------~~VPValHLDH~~~--- 86 (284)
T PRK12857 24 NCNNMEIVQAIVAAAEAEK---SPVIIQAS----QGAIKYAGIEYISAMVRTAAEK-------ASVPVALHLDHGTD--- 86 (284)
T ss_pred EeCCHHHHHHHHHHHHHhC---CCEEEEec----hhHhhhCCHHHHHHHHHHHHHH-------CCCCEEEECCCCCC---
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC-----CccEEEecC--
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG-----KLPIIGVGG-- 267 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~-----~ipvia~GG-- 267 (328)
.+.+..+ .++|++.|.+-+.... ...+++..+++.+.... +..|=-+||
T Consensus 87 -~e~i~~a--i~~GftSVM~DgS~lp---------------------~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e 142 (284)
T PRK12857 87 -FEQVMKC--IRNGFTSVMIDGSKLP---------------------LEENIALTKKVVEIAHAVGVSVEAELGKIGGTE 142 (284)
T ss_pred -HHHHHHH--HHcCCCeEEEeCCCCC---------------------HHHHHHHHHHHHHHHHHcCCEEEEEeeecCCcc
Q ss_pred -----------CCCHHHHHHHHH-hccCeeeeh
Q psy5880 268 -----------VFSGKDAFEKIK-AGASLVQIY 288 (328)
Q Consensus 268 -----------I~s~~da~~~l~-~GAd~V~vg 288 (328)
.++|+++.++++ +|+|+..++
T Consensus 143 ~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAva 175 (284)
T PRK12857 143 DDITVDEREAAMTDPEEARRFVEETGVDALAIA 175 (284)
T ss_pred CCCCcccchhhcCCHHHHHHHHHHHCCCEEeec
No 485
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.05 E-value=0.87 Score=43.38 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=77.3
Q ss_pred ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCC
Q psy5880 191 SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFS 270 (328)
Q Consensus 191 ~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s 270 (328)
+.+++.++|+.+ .+.|+.++--. .+..| ....++.|.. ..++++++++++..+ +|++. -+.+
T Consensus 113 s~eq~l~~A~~l--k~~g~~~~r~g-~~kpR---------tsp~sf~G~g--~~gl~~L~~~~~e~G--l~~~t--ev~d 174 (352)
T PRK13396 113 NEEMIVETAKRV--KAAGAKFLRGG-AYKPR---------TSPYAFQGHG--ESALELLAAAREATG--LGIIT--EVMD 174 (352)
T ss_pred CHHHHHHHHHHH--HHcCCCEEEee-eecCC---------CCCcccCCch--HHHHHHHHHHHHHcC--CcEEE--eeCC
Confidence 446788999999 88998876411 11100 1112344443 467899999999887 88886 5899
Q ss_pred HHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCC-CHHHHhcc
Q psy5880 271 GKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYN-SVSQAVGA 324 (328)
Q Consensus 271 ~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~-si~e~~G~ 324 (328)
.+++..+.+. +|+++||+..+. +..+++.+.+--+-.+-++|.. +++|+...
T Consensus 175 ~~~v~~~~~~-~d~lqIga~~~~-n~~LL~~va~t~kPVllk~G~~~t~ee~~~A 227 (352)
T PRK13396 175 AADLEKIAEV-ADVIQVGARNMQ-NFSLLKKVGAQDKPVLLKRGMAATIDEWLMA 227 (352)
T ss_pred HHHHHHHHhh-CCeEEECccccc-CHHHHHHHHccCCeEEEeCCCCCCHHHHHHH
Confidence 9999998887 999999999884 4667666644323344456666 67766553
No 486
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=92.04 E-value=3.7 Score=37.87 Aligned_cols=86 Identities=21% Similarity=0.272 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+...++++-....+ .+++-++-+ ..++.. + ..+.-.++++.+.+... .++||++=++.. +.++..+++
T Consensus 22 ~~~~~~i~~l~~~G--v~gl~~~Gs--tGE~~~-L-t~~Er~~l~~~~~~~~~-----~~~~vi~gv~~~-st~~~i~~a 89 (289)
T PF00701_consen 22 DALKRLIDFLIEAG--VDGLVVLGS--TGEFYS-L-TDEERKELLEIVVEAAA-----GRVPVIAGVGAN-STEEAIELA 89 (289)
T ss_dssp HHHHHHHHHHHHTT--SSEEEESST--TTTGGG-S--HHHHHHHHHHHHHHHT-----TSSEEEEEEESS-SHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCEEEECCC--Cccccc-C-CHHHHHHHHHHHHHHcc-----CceEEEecCcch-hHHHHHHHH
Confidence 44555555555444 999987544 222111 1 22334455555555432 578999988775 345788999
Q ss_pred HHhccccCCccEEEEecCCc
Q psy5880 200 DVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~ 219 (328)
+.+ +++|+|++.+....+
T Consensus 90 ~~a--~~~Gad~v~v~~P~~ 107 (289)
T PF00701_consen 90 RHA--QDAGADAVLVIPPYY 107 (289)
T ss_dssp HHH--HHTT-SEEEEEESTS
T ss_pred HHH--hhcCceEEEEecccc
Confidence 999 999999998876543
No 487
>PRK08227 autoinducer 2 aldolase; Validated
Probab=91.95 E-value=7.1 Score=35.75 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=28.7
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
..+||++-=.+-.+.+++.+++..+ .++|+.|+.+.
T Consensus 191 ~~vPVviaGG~k~~~~~~L~~v~~a--i~aGa~Gv~~G 226 (264)
T PRK08227 191 CPVPIVIAGGKKLPERDALEMCYQA--IDEGASGVDMG 226 (264)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHH--HHcCCceeeec
Confidence 5689998777766667788888888 88999999654
No 488
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=91.93 E-value=2.4 Score=40.89 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 245 STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
+++.++.+++..+ .|||. .||.+.+|+.+++++|+|+|.|+
T Consensus 233 tW~di~~lr~~~~--~pviv-KgV~s~~dA~~a~~~Gvd~I~Vs 273 (381)
T PRK11197 233 SWKDLEWIRDFWD--GPMVI-KGILDPEDARDAVRFGADGIVVS 273 (381)
T ss_pred CHHHHHHHHHhCC--CCEEE-EecCCHHHHHHHHhCCCCEEEEC
Confidence 3556888899887 88665 68899999999999999999775
No 489
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=91.82 E-value=4.7 Score=37.43 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCh-hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCC--
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSL-DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGL-- 236 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~-~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~-- 236 (328)
+.+++..+++..+. .++||++.+-.++.. ..+..-++.+ +++|+.+|++=..... ...|+
T Consensus 60 ~~e~~~~~~~I~~~----~~lPv~aD~d~GyG~~~~v~~tV~~~--~~aGvagi~IEDq~~p-----------k~cg~~~ 122 (290)
T TIGR02321 60 MSTHLEMMRAIAST----VSIPLIADIDTGFGNAVNVHYVVPQY--EAAGASAIVMEDKTFP-----------KDTSLRT 122 (290)
T ss_pred HHHHHHHHHHHHhc----cCCCEEEECCCCCCCcHHHHHHHHHH--HHcCCeEEEEeCCCCC-----------ccccccc
Confidence 34444444444332 789999999876533 2466668888 8999999987543211 01222
Q ss_pred CC-CcCchH--HHHHHHHHHHHc-CCCccEEEecCCC----CHHHHH----HHHHhccCeeeehhHHhhcCchHHHHHHH
Q psy5880 237 SG-EPLRNK--STELISEMYKLT-KGKLPIIGVGGVF----SGKDAF----EKIKAGASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 237 sg-~~~~~~--~l~~v~~i~~~~-~~~ipvia~GGI~----s~~da~----~~l~~GAd~V~vg~a~l~~gp~~~~~i~~ 304 (328)
.| ..+.+. ..+.|+.+++.- +.++-|++=-... ..+++. .+.++|||+|.+-... .+++.+.++.+
T Consensus 123 ~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~--~~~~ei~~~~~ 200 (290)
T TIGR02321 123 DGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ--KTPDEILAFVK 200 (290)
T ss_pred CCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCC--CCHHHHHHHHH
Confidence 22 222222 223333333331 1124444432221 235554 4556999999985433 35788888887
Q ss_pred HHH
Q psy5880 305 ELE 307 (328)
Q Consensus 305 ~l~ 307 (328)
.+.
T Consensus 201 ~~~ 203 (290)
T TIGR02321 201 SWP 203 (290)
T ss_pred hcC
Confidence 664
No 490
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.81 E-value=11 Score=34.97 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=56.1
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH-HH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG-KD 273 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~-~d 273 (328)
+.+..+.+ .+-|+|.+.++-++. .|.|.+.| .+.++.+++|++.++ +|++.-||=..+ ++
T Consensus 157 peea~~Fv--~~TgvD~LAvaiGt~-------------HG~y~~~p--~Ld~~~L~~I~~~~~--vPLVLHGgSG~~~e~ 217 (284)
T PRK09195 157 PAQAREFV--EATGIDSLAVAIGTA-------------HGMYKGEP--KLDFDRLENIRQWVN--IPLVLHGASGLPTKD 217 (284)
T ss_pred HHHHHHHH--HHHCcCEEeeccCcc-------------ccccCCCC--cCCHHHHHHHHHHhC--CCeEEecCCCCCHHH
Confidence 34444555 567999987764332 24455543 245678899999886 999988876655 55
Q ss_pred HHHHHHhccCeeeehhHHh
Q psy5880 274 AFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l 292 (328)
+.+++..|..=|=++|.+.
T Consensus 218 ~~~ai~~Gi~KiNi~T~l~ 236 (284)
T PRK09195 218 IQQTIKLGICKVNVATELK 236 (284)
T ss_pred HHHHHHcCCeEEEeCcHHH
Confidence 7778999988899999874
No 491
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=91.76 E-value=8.2 Score=35.18 Aligned_cols=82 Identities=7% Similarity=0.021 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHhcc-cccEEEE-ccCC-CCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhH
Q psy5880 119 ADVVLDSVKGILKFGD-VAHYFVV-NVSS-PNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEK 195 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~-~~d~iei-N~sc-Pn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~ 195 (328)
++.++...+.++.+.+ ++|++-+ |+.. |... .-..+.-..+..++.+|++. ..+|+.|-+=.+-.
T Consensus 24 ~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~-~~~p~tva~m~~i~~~v~~~-------~~~p~GvnvL~nd~---- 91 (257)
T TIGR00259 24 NAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLK-EVDPETVAAMAVIAGQLKSD-------VSIPLGINVLRNDA---- 91 (257)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcC-CCCHHHHHHHHHHHHHHHHh-------cCCCeeeeeecCCC----
Confidence 3455555566666666 7999876 6543 4432 11111123445555555554 67898886544322
Q ss_pred HHHHHHhccccCCccEEEE
Q psy5880 196 KDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~ 214 (328)
......+ ...|+++|-+
T Consensus 92 ~aal~iA--~a~ga~FIRv 108 (257)
T TIGR00259 92 VAALAIA--MAVGAKFIRV 108 (257)
T ss_pred HHHHHHH--HHhCCCEEEE
Confidence 2222334 5789999855
No 492
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=91.74 E-value=6.3 Score=36.43 Aligned_cols=133 Identities=9% Similarity=0.153 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHH
Q psy5880 118 IADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKD 197 (328)
Q Consensus 118 ~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ 197 (328)
..+.+..++++|++.. .. +.|.++ |.. ......+.+..++....+. .++||.+-+-.+.+. +
T Consensus 27 n~e~~~avi~aAe~~~--~P-vii~~~-~~~---~~~~~~~~~~~~~~~~a~~-------~~vpv~lHlDH~~~~----e 88 (281)
T PRK06806 27 NMEMVMGAIKAAEELN--SP-IILQIA-EVR---LNHSPLHLIGPLMVAAAKQ-------AKVPVAVHFDHGMTF----E 88 (281)
T ss_pred CHHHHHHHHHHHHHhC--CC-EEEEcC-cch---hccCChHHHHHHHHHHHHH-------CCCCEEEECCCCCCH----H
Confidence 4567888888888887 33 333343 222 1111123344444433332 578999999877552 3
Q ss_pred HHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC-CCccE----EEec------
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK-GKLPI----IGVG------ 266 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~-~~ipv----ia~G------ 266 (328)
.++.+ .++|++.|-+-..... ....++..+++++... -+++| .-.|
T Consensus 89 ~i~~A--l~~G~tsVm~d~s~~~---------------------~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~ 145 (281)
T PRK06806 89 KIKEA--LEIGFTSVMFDGSHLP---------------------LEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGS 145 (281)
T ss_pred HHHHH--HHcCCCEEEEcCCCCC---------------------HHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCc
Confidence 45556 6899998865432211 1122333333332211 00222 1222
Q ss_pred ---C--CCCHHHHHHHHH-hccCeeee--hhHH
Q psy5880 267 ---G--VFSGKDAFEKIK-AGASLVQI--YTSF 291 (328)
Q Consensus 267 ---G--I~s~~da~~~l~-~GAd~V~v--g~a~ 291 (328)
| .++++++.++.+ +|+|.+.+ |+..
T Consensus 146 ~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~h 178 (281)
T PRK06806 146 EDIEMLLTSTTEAKRFAEETDVDALAVAIGNAH 178 (281)
T ss_pred ccccceeCCHHHHHHHHHhhCCCEEEEccCCCC
Confidence 2 689999999985 69999999 7654
No 493
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=91.71 E-value=10 Score=34.62 Aligned_cols=182 Identities=15% Similarity=0.231 Sum_probs=96.3
Q ss_pred ccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcc
Q psy5880 55 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGD 134 (328)
Q Consensus 55 ~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~ 134 (328)
-++.+.++-|+-....|. .+.-.++++.+.+... ...|+++.+... +..+..++++.++.++
T Consensus 31 Gv~gi~~~GstGE~~~ls----~~Er~~l~~~~~~~~~-----~~~~vi~gv~~~--------~~~~~i~~a~~a~~~G- 92 (281)
T cd00408 31 GVDGLVVLGTTGEAPTLT----DEERKEVIEAVVEAVA-----GRVPVIAGVGAN--------STREAIELARHAEEAG- 92 (281)
T ss_pred CCCEEEECCCCcccccCC----HHHHHHHHHHHHHHhC-----CCCeEEEecCCc--------cHHHHHHHHHHHHHcC-
Confidence 357778887666655544 3444666666665542 246776665432 1234555555565555
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCC-hhhHHHHHHHhccccC-CccEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLS-LDEKKDIADVVLDSKC-KVDGL 212 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~-~~~~~~~a~~l~~~~~-G~d~i 212 (328)
+|++-+ ..|... . ...+.+.+..++|.+. .++|+++--.|..+ ..-..++.+.+ .+. .+-+|
T Consensus 93 -ad~v~v--~pP~y~--~--~~~~~~~~~~~~ia~~-------~~~pi~iYn~P~~tg~~l~~~~~~~L--~~~~~v~gi 156 (281)
T cd00408 93 -ADGVLV--VPPYYN--K--PSQEGIVAHFKAVADA-------SDLPVILYNIPGRTGVDLSPETIARL--AEHPNIVGI 156 (281)
T ss_pred -CCEEEE--CCCcCC--C--CCHHHHHHHHHHHHhc-------CCCCEEEEECccccCCCCCHHHHHHH--hcCCCEEEE
Confidence 999985 334431 1 1234456666666554 67999987655321 00012334444 321 12222
Q ss_pred EEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 213 IVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 213 ~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
--+. + .+..+.++++..++++.|+. |. -..+...+..|++....|.+.+
T Consensus 157 K~s~---------------------~------d~~~~~~~~~~~~~~~~v~~-G~---d~~~~~~l~~G~~G~i~~~~n~ 205 (281)
T cd00408 157 KDSS---------------------G------DLDRLTRLIALLGPDFAVLS-GD---DDLLLPALALGADGAISGAANV 205 (281)
T ss_pred EeCC---------------------C------CHHHHHHHHHhcCCCeEEEE-cc---hHHHHHHHHcCCCEEEehHHhh
Confidence 1111 0 12344555555543454443 32 4667778889999998887654
Q ss_pred hcCchHHHHHH
Q psy5880 293 YHGPPLVTRIK 303 (328)
Q Consensus 293 ~~gp~~~~~i~ 303 (328)
. |+.+.++.
T Consensus 206 ~--p~~~~~~~ 214 (281)
T cd00408 206 A--PKLAVALY 214 (281)
T ss_pred C--HHHHHHHH
Confidence 2 55444443
No 494
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=91.66 E-value=3.3 Score=35.97 Aligned_cols=122 Identities=16% Similarity=0.068 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEE--EeCCCCChhhHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILV--KIAPDLSLDEKKDIA 199 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~v--Kl~~~~~~~~~~~~a 199 (328)
.++..+.++.+..+.+.+|+..+ .. ..+-.++++.+++.. .+.++++ |+. +.+ ...+
T Consensus 11 ~~~a~~~~~~l~~~v~~iev~~~--l~--------~~~g~~~i~~l~~~~------~~~~i~~d~k~~---d~~--~~~~ 69 (206)
T TIGR03128 11 IEEALELAEKVADYVDIIEIGTP--LI--------KNEGIEAVKEMKEAF------PDRKVLADLKTM---DAG--EYEA 69 (206)
T ss_pred HHHHHHHHHHcccCeeEEEeCCH--HH--------HHhCHHHHHHHHHHC------CCCEEEEEEeec---cch--HHHH
Confidence 34444555555446899997322 10 011235566666542 2345554 333 111 1236
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEe-cCCCC-HHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGV-GGVFS-GKDAFEK 277 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~-GGI~s-~~da~~~ 277 (328)
+.+ .++|+|+|+++..... ....+.+..+++. + ++++.. =+..+ .+++..+
T Consensus 70 ~~~--~~~Gad~i~vh~~~~~----------------------~~~~~~i~~~~~~-g--~~~~~~~~~~~t~~~~~~~~ 122 (206)
T TIGR03128 70 EQA--FAAGADIVTVLGVADD----------------------ATIKGAVKAAKKH-G--KEVQVDLINVKDKVKRAKEL 122 (206)
T ss_pred HHH--HHcCCCEEEEeccCCH----------------------HHHHHHHHHHHHc-C--CEEEEEecCCCChHHHHHHH
Confidence 777 8999999988753210 0112445555553 3 777653 24444 4788888
Q ss_pred HHhccCeeeehhHH
Q psy5880 278 IKAGASLVQIYTSF 291 (328)
Q Consensus 278 l~~GAd~V~vg~a~ 291 (328)
.+.|+|.|.+..++
T Consensus 123 ~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 123 KELGADYIGVHTGL 136 (206)
T ss_pred HHcCCCEEEEcCCc
Confidence 88899999986543
No 495
>PLN02591 tryptophan synthase
Probab=91.66 E-value=4.6 Score=36.68 Aligned_cols=172 Identities=16% Similarity=0.185 Sum_probs=88.7
Q ss_pred chhHhhhhhhhcccCCc----ccccCCCCcCChh--hHHHHHH------HhHHHHHHHhhcCccceEEeccCCC-CCcCc
Q psy5880 5 DESTCSRILSRVFRSGE----WGCTPTHNMLSSF--ARMRAWV------LQFWLLGILKFGDVAHYFVVNVSSP-NTANL 71 (328)
Q Consensus 5 ~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~--~~v~~~~------l~~y~~~~~~l~~~~~~v~~n~ssp-N~~gl 71 (328)
|.++..+++.--...|. +|+.+..+.+... -.+...- +++.++.++++....+ .| =.++.
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~-------~p~ilm~Y 86 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLS-------CPIVLFTY 86 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCC-------CCEEEEec
Confidence 34444444433334443 8888888876431 0111111 2244554554442211 12 12344
Q ss_pred cCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcch
Q psy5880 72 RKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANL 151 (328)
Q Consensus 72 ~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~ 151 (328)
+|.-...+++++++.+++++.. .-+ .||+. .++..++.+.+++.+ .+.|- +-.|+++..
T Consensus 87 ~N~i~~~G~~~F~~~~~~aGv~------Gvi----ipDLP-------~ee~~~~~~~~~~~g--l~~I~--lv~Ptt~~~ 145 (250)
T PLN02591 87 YNPILKRGIDKFMATIKEAGVH------GLV----VPDLP-------LEETEALRAEAAKNG--IELVL--LTTPTTPTE 145 (250)
T ss_pred ccHHHHhHHHHHHHHHHHcCCC------EEE----eCCCC-------HHHHHHHHHHHHHcC--CeEEE--EeCCCCCHH
Confidence 5554555777888877777631 111 23442 235566666666655 44443 334665311
Q ss_pred hh-----------------------hhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCC
Q psy5880 152 RK-----------------------LQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCK 208 (328)
Q Consensus 152 ~~-----------------------~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G 208 (328)
|. ...+..+.++++.||+. .+.||.+ .-+.+. ..++ +.+ .+.|
T Consensus 146 ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~-------~~~Pv~v--GFGI~~--~e~v-~~~--~~~G 211 (250)
T PLN02591 146 RMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEV-------TDKPVAV--GFGISK--PEHA-KQI--AGWG 211 (250)
T ss_pred HHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc-------CCCceEE--eCCCCC--HHHH-HHH--HhcC
Confidence 10 01134567777777775 6899998 344442 2333 446 6899
Q ss_pred ccEEEEecCC
Q psy5880 209 VDGLIVSNTT 218 (328)
Q Consensus 209 ~d~i~~~n~~ 218 (328)
+||+++....
T Consensus 212 ADGvIVGSal 221 (250)
T PLN02591 212 ADGVIVGSAM 221 (250)
T ss_pred CCEEEECHHH
Confidence 9999877644
No 496
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=91.52 E-value=1.9 Score=38.30 Aligned_cols=87 Identities=14% Similarity=0.184 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCC
Q psy5880 158 DQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLS 237 (328)
Q Consensus 158 ~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~s 237 (328)
..+.++.+.+++.++. .++|+++- + -. +.+ .+.|+||||+.....
T Consensus 54 ~~~~~~a~~l~~l~~~----~gv~liIN-----d---~~---dlA--~~~~adGVHLg~~d~------------------ 98 (221)
T PRK06512 54 ATFQKQAEKLVPVIQE----AGAAALIA-----G---DS---RIA--GRVKADGLHIEGNLA------------------ 98 (221)
T ss_pred HHHHHHHHHHHHHHHH----hCCEEEEe-----C---HH---HHH--HHhCCCEEEECcccc------------------
Confidence 3455566666666443 46888875 1 22 334 567899999875311
Q ss_pred CCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhH
Q psy5880 238 GEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 238 g~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a 290 (328)
-+..+++.... -.+||..-.++.+++.++.+.|||.|.+|.-
T Consensus 99 ----------~~~~~r~~~~~-~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv 140 (221)
T PRK06512 99 ----------ALAEAIEKHAP-KMIVGFGNLRDRHGAMEIGELRPDYLFFGKL 140 (221)
T ss_pred ----------CHHHHHHhcCC-CCEEEecCCCCHHHHHHhhhcCCCEEEECCC
Confidence 02444544432 3467766678899999988899999999964
No 497
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=91.38 E-value=9.2 Score=34.48 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHhccCeeeehhHHhhc
Q psy5880 267 GVFSGKDAFEKIKAGASLVQIYTSFVYH 294 (328)
Q Consensus 267 GI~s~~da~~~l~~GAd~V~vg~a~l~~ 294 (328)
++.++.++ +.+|||.+.|||+++..
T Consensus 196 ~~~t~~~A---~~~Gad~ivVGR~I~~a 220 (240)
T COG0284 196 RVMTPGEA---VRAGADYIVVGRPITQA 220 (240)
T ss_pred cccCHHHH---HhcCCCEEEEChhhhcC
Confidence 34445544 45899999999999754
No 498
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=91.37 E-value=1.1 Score=39.41 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=64.2
Q ss_pred EEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccE
Q psy5880 183 LVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPI 262 (328)
Q Consensus 183 ~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipv 262 (328)
+.||-|+-. +++.++++.+ .++|+|+|.+.+++.- ......+.++.+|+..+ +||
T Consensus 2 ~~~iDP~k~-e~~~~ia~~v--~~~gtDaI~VGGS~gv--------------------t~~~~~~~v~~ik~~~~--lPv 56 (205)
T TIGR01769 2 FTLIDPEKS-DEIEKIAKNA--KDAGTDAIMVGGSLGI--------------------VESNLDQTVKKIKKITN--LPV 56 (205)
T ss_pred ccccCCCcH-HHHHHHHHHH--HhcCCCEEEEcCcCCC--------------------CHHHHHHHHHHHHhhcC--CCE
Confidence 356767655 6788888899 8999999988765321 01123467788888776 999
Q ss_pred EEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhC
Q psy5880 263 IGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEG 314 (328)
Q Consensus 263 ia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g 314 (328)
+.- ..+... +.-+||++.+=+-+=.++|+|+-.....-.-.+.+.|
T Consensus 57 ilf--p~~~~~----i~~~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~ 102 (205)
T TIGR01769 57 ILF--PGNVNG----LSRYADAVFFMSLLNSADTYFIVGAQILGAITILKLN 102 (205)
T ss_pred EEE--CCCccc----cCcCCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcC
Confidence 953 223222 2357999987776645678886665332222234444
No 499
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=91.36 E-value=5.1 Score=35.55 Aligned_cols=183 Identities=21% Similarity=0.259 Sum_probs=92.8
Q ss_pred hHHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHH
Q psy5880 43 QFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVV 122 (328)
Q Consensus 43 ~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i 122 (328)
++....++++..+++.+.++..--...|+ +.+.++++.+++.+ .|++. |+-+.. .....
T Consensus 13 ~~a~~i~~~~~~~v~~iKvG~~l~~~~G~------~~l~~~i~~l~~~~--------~~I~~----D~K~~D---ig~t~ 71 (226)
T PF00215_consen 13 EEALRIADELGDYVDIIKVGTPLFLAYGL------EALPEIIEELKERG--------KPIFL----DLKLGD---IGNTV 71 (226)
T ss_dssp HHHHHHHHHHGGGSSEEEEEHHHHHHHCH------HHHHHHHHHHHHTT--------SEEEE----EEEE-S---SHHHH
T ss_pred HHHHHHHHHhcCcceEEEEChHHHhcCCh------hhHHHHHHHHHHhc--------CCEee----eeeecc---cchHH
Confidence 46667778888889999887422222222 25666666666543 45543 221111 23455
Q ss_pred HHHHH---HHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCC-CCCEEEEeCCCCChhhHHH-
Q psy5880 123 LDSVK---GILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKP-LPPILVKIAPDLSLDEKKD- 197 (328)
Q Consensus 123 ~~~~~---~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~-~~Pv~vKl~~~~~~~~~~~- 197 (328)
..+++ ....++ +|++++|... | .+.+...++..++. . ...+.+-+....+..++..
T Consensus 72 ~~~~~~~~~~~~~g--aD~vTv~~~~----G------~~tl~~~~~~a~~~-------~~~~~~~v~~~s~~~~~~~~~~ 132 (226)
T PF00215_consen 72 ARYAEAGFAAFELG--ADAVTVHPFA----G------DDTLEAAVKAAKKH-------GRKGVFVVDLLSNPDSEDLQDL 132 (226)
T ss_dssp HHHHHSCHHHHTTT--ESEEEEEGTT----H------HHHHHHHHHHHHHT-------TESEEEEEESTTSTTHHHHHHH
T ss_pred HHHHHHhhhhhcCC--CcEEEEeccC----C------HHHHHHHHHHHhcc-------CCcceEEEEecCCCCHHHHHhh
Confidence 55555 334444 9999988763 1 12234444433321 1 2345554444444333222
Q ss_pred -------HHHHhcc--ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHH----HHHcCC-Cc-cE
Q psy5880 198 -------IADVVLD--SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEM----YKLTKG-KL-PI 262 (328)
Q Consensus 198 -------~a~~l~~--~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i----~~~~~~-~i-pv 262 (328)
++..+.+ .+.|++|++++.+.. .+++. ...+++ +. ..
T Consensus 133 ~~~~~~~~v~~~~~~~~~~g~~G~v~~~~~~----------------------------~~~~~~~~~~~l~PGi~~~~~ 184 (226)
T PF00215_consen 133 GLGVDQEIVHRAADLAAKAGVDGIVCSATEP----------------------------AIRKAGPNFKILTPGIGAIQG 184 (226)
T ss_dssp HCTHHHHHHHHHHHHHHHTTEEEEEETTTCH----------------------------HHHHHTTTSEEEEESBSSSTC
T ss_pred hcccHHHHHHHHHHhhccccccCcccccccc----------------------------cccccccchhhccCCCCcccc
Confidence 2222211 357888887775422 11111 000110 12 34
Q ss_pred EEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 263 IGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 263 ia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
-..||+....--......|+|.|.|||++..
T Consensus 185 ~~~~~~~~~~~~~~~~~~g~d~iiVGR~I~~ 215 (226)
T PF00215_consen 185 AVAGGQKRATTPAAAKQAGADIIIVGRAITK 215 (226)
T ss_dssp EECSSHHCHHHHHHHHHTTGSEEEESHHHHT
T ss_pred cCcccccccccHHHHHhcCCEEEEEChHHhC
Confidence 4455555444444445589999999999974
No 500
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=91.35 E-value=7.3 Score=36.61 Aligned_cols=111 Identities=15% Similarity=0.173 Sum_probs=72.3
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhcccc---CCccE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSK---CKVDG 211 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~---~G~d~ 211 (328)
++..+-+-++- .+++.-.+.+++|++. ++ .++.+.+--...++.++...+++.+ .+ .++.+
T Consensus 133 G~~~~KvKvG~---------~~~~~d~~~v~air~~---~g--~~~~l~vDaN~~w~~~~A~~~~~~l--~~l~~~~i~~ 196 (320)
T PRK02714 133 GYRTFKWKIGV---------DPLEQELKIFEQLLER---LP--AGAKLRLDANGGLSLEEAKRWLQLC--DRRLSGKIEF 196 (320)
T ss_pred CCCEEEEEECC---------CChHHHHHHHHHHHHh---cC--CCCEEEEECCCCCCHHHHHHHHHHH--hhccCCCccE
Confidence 57777665541 0122235566666665 33 4678888887778888888888888 55 34444
Q ss_pred EEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeeh
Q psy5880 212 LIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIY 288 (328)
Q Consensus 212 i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg 288 (328)
| .. |..+..++..+.+++..+ +||.+-=.+.+..|+.+++..| +|.|++=
T Consensus 197 i-------Eq------------------P~~~~~~~~~~~l~~~~~--~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik 247 (320)
T PRK02714 197 I-------EQ------------------PLPPDQFDEMLQLSQDYQ--TPIALDESVANLAQLQQCYQQGWRGIFVIK 247 (320)
T ss_pred E-------EC------------------CCCcccHHHHHHHHHhCC--CCEEECCccCCHHHHHHHHHcCCCCEEEEc
Confidence 4 11 111223455677787776 9999888899999999999887 5556544
Done!