Query psy5880
Match_columns 328
No_of_seqs 310 out of 2466
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 20:27:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zwt_A Dihydroorotate dehydrog 100.0 2.8E-42 9.6E-47 326.7 23.6 255 64-328 113-367 (367)
2 3i65_A Dihydroorotate dehydrog 100.0 5.8E-42 2E-46 326.4 20.6 218 107-328 183-414 (415)
3 1tv5_A Dhodehase, dihydroorota 100.0 1.1E-38 3.9E-43 307.6 23.0 216 108-327 182-441 (443)
4 4ef8_A Dihydroorotate dehydrog 100.0 5.3E-37 1.8E-41 288.6 21.7 240 59-327 94-345 (354)
5 3oix_A Putative dihydroorotate 100.0 2.6E-36 9E-41 283.2 20.4 240 57-326 93-342 (345)
6 1jub_A Dihydroorotate dehydrog 100.0 1.3E-33 4.4E-38 262.9 21.2 198 121-327 104-310 (311)
7 3tjx_A Dihydroorotate dehydrog 100.0 1E-33 3.5E-38 268.1 20.1 283 17-327 37-345 (354)
8 2e6f_A Dihydroorotate dehydrog 100.0 2.1E-32 7.1E-37 255.1 17.9 196 122-327 105-312 (314)
9 1f76_A Dihydroorotate dehydrog 100.0 4.8E-31 1.6E-35 248.1 20.1 215 80-306 120-336 (336)
10 3gr7_A NADPH dehydrogenase; fl 100.0 3E-29 1E-33 235.7 21.6 244 34-307 34-325 (340)
11 1ep3_A Dihydroorotate dehydrog 100.0 2.1E-29 7.3E-34 234.1 19.5 230 67-327 72-308 (311)
12 3hgj_A Chromate reductase; TIM 100.0 1.5E-28 5E-33 232.1 21.7 250 31-307 29-336 (349)
13 1z41_A YQJM, probable NADH-dep 100.0 9.3E-28 3.2E-32 225.8 21.0 245 33-307 33-325 (338)
14 3kru_A NADH:flavin oxidoreduct 100.0 9.4E-28 3.2E-32 225.3 20.2 247 28-303 26-321 (343)
15 3l5l_A Xenobiotic reductase A; 100.0 4.8E-28 1.6E-32 229.6 16.9 248 33-307 30-343 (363)
16 3l5a_A NADH/flavin oxidoreduct 99.9 1E-27 3.5E-32 230.6 14.1 260 27-306 49-363 (419)
17 4ab4_A Xenobiotic reductase B; 99.9 8.6E-27 2.9E-31 220.0 16.6 237 29-306 27-325 (362)
18 3gka_A N-ethylmaleimide reduct 99.9 2.3E-26 7.8E-31 217.1 17.9 238 28-306 34-333 (361)
19 1gte_A Dihydropyrimidine dehyd 99.9 1.3E-25 4.6E-30 238.5 21.7 190 123-324 648-852 (1025)
20 2gou_A Oxidoreductase, FMN-bin 99.9 8.3E-26 2.8E-30 214.2 17.7 239 33-306 33-339 (365)
21 2hsa_B 12-oxophytodienoate red 99.9 3.7E-25 1.3E-29 212.0 19.5 246 34-305 45-364 (402)
22 2r14_A Morphinone reductase; H 99.9 3.4E-25 1.2E-29 210.7 18.3 239 33-305 37-344 (377)
23 1vyr_A Pentaerythritol tetrani 99.9 1.2E-24 4E-29 206.3 20.0 238 33-305 33-339 (364)
24 1icp_A OPR1, 12-oxophytodienoa 99.9 6.5E-25 2.2E-29 208.8 16.5 239 34-305 43-346 (376)
25 3aty_A Tcoye, prostaglandin F2 99.9 1.6E-24 5.5E-29 206.0 18.0 241 29-306 30-353 (379)
26 4a3u_A NCR, NADH\:flavin oxido 99.9 1.1E-23 3.7E-28 199.3 14.8 247 27-306 25-332 (358)
27 1ps9_A 2,4-dienoyl-COA reducta 99.9 2.5E-23 8.4E-28 212.3 18.0 248 36-307 34-328 (671)
28 1o94_A Tmadh, trimethylamine d 99.9 1.2E-22 4.1E-27 209.0 16.9 244 40-306 40-338 (729)
29 3tjl_A NADPH dehydrogenase; OL 99.9 3.6E-23 1.2E-27 197.2 9.6 249 30-306 38-363 (407)
30 3k30_A Histamine dehydrogenase 99.9 3.9E-22 1.3E-26 204.1 17.5 240 42-307 47-342 (690)
31 3b0p_A TRNA-dihydrouridine syn 99.9 4.3E-22 1.5E-26 187.8 14.3 159 122-305 69-241 (350)
32 4gbu_A NADPH dehydrogenase 1; 99.9 2.7E-22 9.3E-27 192.4 12.1 252 27-306 38-365 (400)
33 1vhn_A Putative flavin oxidore 99.9 1E-21 3.5E-26 183.1 14.0 153 122-305 70-229 (318)
34 1p0k_A Isopentenyl-diphosphate 99.8 7E-20 2.4E-24 172.8 18.4 182 124-326 131-326 (349)
35 2nli_A Lactate oxidase; flavoe 99.8 1E-17 3.4E-22 158.7 16.8 173 120-326 146-359 (368)
36 3sgz_A Hydroxyacid oxidase 2; 99.8 1.9E-17 6.4E-22 154.9 16.5 172 119-325 134-346 (352)
37 1kbi_A Cytochrome B2, L-LCR; f 99.7 2.4E-17 8.2E-22 162.2 17.2 173 119-326 259-478 (511)
38 1vcf_A Isopentenyl-diphosphate 99.7 1.7E-17 5.8E-22 155.4 14.9 183 122-327 134-331 (332)
39 1gox_A (S)-2-hydroxy-acid oxid 99.7 5.4E-17 1.9E-21 154.0 17.5 173 120-326 136-355 (370)
40 3vkj_A Isopentenyl-diphosphate 99.7 3.3E-17 1.1E-21 154.9 15.6 182 121-325 136-340 (368)
41 2nzl_A Hydroxyacid oxidase 1; 99.7 3.8E-17 1.3E-21 155.9 16.0 173 119-326 159-382 (392)
42 3sr7_A Isopentenyl-diphosphate 99.7 3.3E-17 1.1E-21 154.4 14.5 180 122-325 157-352 (365)
43 1p4c_A L(+)-mandelate dehydrog 99.6 1.4E-14 4.7E-19 137.9 16.0 135 157-326 210-353 (380)
44 3i65_A Dihydroorotate dehydrog 99.6 1.3E-14 4.6E-19 138.1 15.4 171 19-216 181-375 (415)
45 1ypf_A GMP reductase; GUAC, pu 99.6 7.5E-14 2.6E-18 130.8 18.7 165 126-324 111-320 (336)
46 1mzh_A Deoxyribose-phosphate a 99.6 3.7E-14 1.3E-18 125.5 13.1 119 135-290 83-206 (225)
47 1eep_A Inosine 5'-monophosphat 99.5 2.6E-13 8.8E-18 130.3 17.3 166 123-325 155-382 (404)
48 3zwt_A Dihydroorotate dehydrog 99.5 3.6E-13 1.2E-17 127.2 16.9 170 20-216 147-328 (367)
49 1jcn_A Inosine monophosphate d 99.5 4.2E-13 1.4E-17 132.6 17.9 168 122-324 256-482 (514)
50 1ea0_A Glutamate synthase [NAD 99.5 6.7E-13 2.3E-17 141.5 16.3 149 157-325 977-1165(1479)
51 2qr6_A IMP dehydrogenase/GMP r 99.4 1.6E-12 5.4E-17 124.3 16.5 166 123-325 168-389 (393)
52 1ofd_A Ferredoxin-dependent gl 99.4 9.5E-13 3.3E-17 140.6 15.4 149 157-325 1012-1200(1520)
53 1tv5_A Dhodehase, dihydroorota 99.4 3.7E-12 1.3E-16 122.8 16.8 171 19-216 179-403 (443)
54 2z6i_A Trans-2-enoyl-ACP reduc 99.4 3.7E-12 1.3E-16 119.1 14.6 124 122-298 77-200 (332)
55 3r2g_A Inosine 5'-monophosphat 99.4 2.9E-11 1E-15 113.4 19.9 165 121-324 100-317 (361)
56 2c6q_A GMP reductase 2; TIM ba 99.4 1.5E-11 5.1E-16 115.6 16.7 156 135-324 132-340 (351)
57 4avf_A Inosine-5'-monophosphat 99.4 1.8E-11 6E-16 120.1 17.1 167 123-325 231-460 (490)
58 1vrd_A Inosine-5'-monophosphat 99.3 2.8E-11 9.6E-16 119.0 18.5 167 123-324 239-462 (494)
59 4fxs_A Inosine-5'-monophosphat 99.3 3.3E-11 1.1E-15 118.3 17.8 165 125-325 235-459 (496)
60 3khj_A Inosine-5-monophosphate 99.3 9.9E-11 3.4E-15 110.4 20.2 166 123-324 107-331 (361)
61 2gjl_A Hypothetical protein PA 99.3 1.6E-10 5.4E-15 107.7 18.3 125 122-297 85-209 (328)
62 3bo9_A Putative nitroalkan dio 99.3 7.6E-11 2.6E-15 109.9 14.7 121 122-294 91-211 (326)
63 3usb_A Inosine-5'-monophosphat 99.2 1.9E-10 6.6E-15 113.2 17.4 162 125-324 260-481 (511)
64 2nv1_A Pyridoxal biosynthesis 99.2 2.5E-11 8.4E-16 112.2 8.3 81 245-327 195-279 (305)
65 3ffs_A Inosine-5-monophosphate 99.2 5.3E-10 1.8E-14 106.3 16.9 165 123-324 146-370 (400)
66 3bw2_A 2-nitropropane dioxygen 99.1 5.4E-10 1.9E-14 105.8 14.9 129 121-298 110-246 (369)
67 4fo4_A Inosine 5'-monophosphat 99.1 2.1E-09 7.2E-14 101.2 16.9 166 122-325 109-336 (366)
68 2zbt_A Pyridoxal biosynthesis 99.1 3.5E-11 1.2E-15 110.7 4.5 80 245-326 195-278 (297)
69 1geq_A Tryptophan synthase alp 99.1 1.5E-09 5.1E-14 96.9 14.8 160 123-293 19-225 (248)
70 3igs_A N-acetylmannosamine-6-p 99.1 2.3E-09 7.9E-14 95.0 14.3 130 127-304 95-225 (232)
71 3q58_A N-acetylmannosamine-6-p 99.1 1.6E-09 5.3E-14 95.9 12.9 125 127-299 95-219 (229)
72 3tdn_A FLR symmetric alpha-bet 99.0 1E-10 3.4E-15 104.7 3.4 90 194-306 157-246 (247)
73 1y0e_A Putative N-acetylmannos 99.0 1.2E-08 4.2E-13 89.4 16.7 134 126-300 81-214 (223)
74 1zfj_A Inosine monophosphate d 99.0 9.7E-09 3.3E-13 100.7 17.6 163 124-324 236-461 (491)
75 2y88_A Phosphoribosyl isomeras 99.0 9.2E-10 3.1E-14 98.0 9.1 89 194-305 150-241 (244)
76 1me8_A Inosine-5'-monophosphat 99.0 1.4E-08 4.7E-13 99.9 18.4 162 126-323 247-471 (503)
77 3oix_A Putative dihydroorotate 99.0 3.4E-09 1.2E-13 99.1 12.7 99 8-134 115-218 (345)
78 1ka9_F Imidazole glycerol phos 98.9 7.4E-09 2.5E-13 92.5 12.9 94 195-315 154-247 (252)
79 3nav_A Tryptophan synthase alp 98.9 2E-08 7E-13 90.7 15.7 165 119-292 33-241 (271)
80 4adt_A Pyridoxine biosynthetic 98.9 2.4E-09 8.3E-14 97.9 9.1 80 245-326 195-278 (297)
81 4ef8_A Dihydroorotate dehydrog 98.9 1.7E-08 5.8E-13 94.6 14.4 146 43-216 139-307 (354)
82 1h5y_A HISF; histidine biosynt 98.9 7.9E-09 2.7E-13 91.8 11.3 108 182-316 141-250 (253)
83 1thf_D HISF protein; thermophI 98.9 1.1E-08 3.9E-13 91.3 12.3 94 195-315 153-246 (253)
84 2qjg_A Putative aldolase MJ040 98.9 1.2E-07 4E-12 85.8 19.0 147 127-322 106-267 (273)
85 3vnd_A TSA, tryptophan synthas 98.9 5.9E-08 2E-12 87.5 16.6 164 120-292 32-239 (267)
86 2agk_A 1-(5-phosphoribosyl)-5- 98.9 2E-09 6.9E-14 97.0 6.5 132 135-304 96-254 (260)
87 2w6r_A Imidazole glycerol phos 98.9 4.4E-09 1.5E-13 94.8 8.6 94 195-315 158-251 (266)
88 1rd5_A Tryptophan synthase alp 98.9 1.3E-07 4.4E-12 85.1 18.1 158 120-293 32-235 (262)
89 3tdn_A FLR symmetric alpha-bet 98.9 9E-09 3.1E-13 91.9 10.2 102 182-306 22-125 (247)
90 3o07_A Pyridoxine biosynthesis 98.9 3.7E-09 1.3E-13 94.3 7.4 154 123-298 21-240 (291)
91 2ekc_A AQ_1548, tryptophan syn 98.9 2.2E-07 7.6E-12 83.7 19.2 158 120-293 31-239 (262)
92 1vzw_A Phosphoribosyl isomeras 98.8 1.8E-08 6.1E-13 89.7 11.3 89 194-305 147-238 (244)
93 1yxy_A Putative N-acetylmannos 98.8 2.5E-08 8.5E-13 88.2 12.1 130 124-298 92-223 (234)
94 1wv2_A Thiazole moeity, thiazo 98.8 2.7E-07 9.1E-12 81.7 18.1 107 178-312 134-246 (265)
95 1f76_A Dihydroorotate dehydrog 98.8 9.8E-08 3.4E-12 89.0 16.4 172 20-216 134-319 (336)
96 3f4w_A Putative hexulose 6 pho 98.8 8.1E-08 2.8E-12 83.4 14.2 142 123-311 67-208 (211)
97 2yzr_A Pyridoxal biosynthesis 98.8 2.2E-08 7.7E-13 91.7 10.8 58 245-304 228-289 (330)
98 1wa3_A 2-keto-3-deoxy-6-phosph 98.8 6.1E-08 2.1E-12 83.8 12.4 145 119-293 21-183 (205)
99 1jvn_A Glutamine, bifunctional 98.8 2.1E-08 7.3E-13 99.6 10.2 94 195-315 454-548 (555)
100 4af0_A Inosine-5'-monophosphat 98.7 4.2E-07 1.4E-11 88.4 18.3 169 122-325 282-524 (556)
101 3ngj_A Deoxyribose-phosphate a 98.7 4.6E-08 1.6E-12 86.3 9.6 121 135-290 108-231 (239)
102 3qja_A IGPS, indole-3-glycerol 98.7 3E-07 1E-11 83.2 15.1 123 126-297 128-250 (272)
103 1qop_A Tryptophan synthase alp 98.7 4.2E-07 1.4E-11 82.1 15.7 161 120-293 31-239 (268)
104 3oa3_A Aldolase; structural ge 98.7 5.1E-07 1.8E-11 81.5 15.5 124 135-290 139-265 (288)
105 1qo2_A Molecule: N-((5-phospho 98.7 5E-08 1.7E-12 86.6 8.7 87 195-304 146-238 (241)
106 2cu0_A Inosine-5'-monophosphat 98.7 1.3E-07 4.4E-12 92.6 11.9 127 178-324 267-453 (486)
107 3tsm_A IGPS, indole-3-glycerol 98.7 6.4E-07 2.2E-11 80.8 15.5 155 121-301 80-261 (272)
108 1ujp_A Tryptophan synthase alp 98.7 4.3E-07 1.5E-11 82.2 14.3 60 246-310 191-253 (271)
109 1thf_D HISF protein; thermophI 98.6 1.2E-07 4E-12 84.7 10.5 90 194-306 31-120 (253)
110 2pgw_A Muconate cycloisomerase 98.6 7.8E-07 2.7E-11 84.4 16.1 145 121-315 147-293 (384)
111 3tha_A Tryptophan synthase alp 98.6 3E-07 1E-11 81.9 11.7 160 122-293 27-232 (252)
112 1ka9_F Imidazole glycerol phos 98.6 1.7E-07 5.8E-12 83.5 9.9 91 193-306 31-121 (252)
113 3tjx_A Dihydroorotate dehydrog 98.6 4.7E-07 1.6E-11 85.0 13.2 61 44-111 144-205 (354)
114 3r12_A Deoxyribose-phosphate a 98.6 8.5E-07 2.9E-11 79.0 13.6 121 135-290 124-247 (260)
115 2ovl_A Putative racemase; stru 98.6 1.6E-06 5.3E-11 82.0 16.2 147 121-315 146-294 (371)
116 1h5y_A HISF; histidine biosynt 98.6 3.5E-07 1.2E-11 81.0 10.8 89 194-305 34-122 (253)
117 1xm3_A Thiazole biosynthesis p 98.5 3.4E-06 1.2E-10 76.0 16.1 130 124-293 83-212 (264)
118 1mdl_A Mandelate racemase; iso 98.5 1.5E-06 5E-11 81.7 13.7 147 121-315 144-292 (359)
119 3ndo_A Deoxyribose-phosphate a 98.5 1.2E-06 4.2E-11 76.9 12.0 122 135-290 93-221 (231)
120 1h1y_A D-ribulose-5-phosphate 98.5 4.4E-06 1.5E-10 73.5 15.6 131 123-297 77-209 (228)
121 1yad_A Regulatory protein TENI 98.5 5.9E-07 2E-11 78.6 9.6 95 199-315 123-217 (221)
122 2nql_A AGR_PAT_674P, isomerase 98.5 2.4E-06 8.1E-11 81.2 14.4 136 121-302 164-301 (388)
123 3ovp_A Ribulose-phosphate 3-ep 98.5 3.1E-06 1.1E-10 74.6 14.0 148 123-315 77-226 (228)
124 1qo2_A Molecule: N-((5-phospho 98.4 1.6E-07 5.5E-12 83.3 5.5 85 194-302 31-115 (241)
125 1rvk_A Isomerase/lactonizing e 98.4 7.6E-06 2.6E-10 77.5 17.4 153 121-315 149-304 (382)
126 1w8s_A FBP aldolase, fructose- 98.4 9.2E-06 3.1E-10 73.1 17.0 138 127-310 99-251 (263)
127 2rdx_A Mandelate racemase/muco 98.4 4.2E-06 1.4E-10 79.2 14.7 133 122-302 146-280 (379)
128 2y88_A Phosphoribosyl isomeras 98.4 1E-06 3.4E-11 78.1 9.3 88 194-305 32-119 (244)
129 2v82_A 2-dehydro-3-deoxy-6-pho 98.4 2.8E-06 9.7E-11 73.7 12.0 146 120-293 19-181 (212)
130 1vzw_A Phosphoribosyl isomeras 98.4 9.6E-07 3.3E-11 78.3 8.7 88 194-305 33-120 (244)
131 3vk5_A MOEO5; TIM barrel, tran 98.4 9.4E-07 3.2E-11 79.3 8.3 60 245-305 213-274 (286)
132 1jub_A Dihydroorotate dehydrog 98.4 1.8E-06 6.2E-11 79.4 10.5 85 42-142 105-192 (311)
133 1ub3_A Aldolase protein; schif 98.4 1.3E-05 4.3E-10 70.1 15.3 120 135-289 84-206 (220)
134 2uva_G Fatty acid synthase bet 98.3 2.8E-06 9.7E-11 95.0 12.9 85 195-294 705-801 (2060)
135 2qgy_A Enolase from the enviro 98.3 1.2E-05 4.1E-10 76.4 15.7 138 121-302 149-288 (391)
136 3vzx_A Heptaprenylglyceryl pho 98.3 3.6E-06 1.2E-10 73.8 10.6 58 246-307 168-226 (228)
137 2og9_A Mandelate racemase/muco 98.3 2.2E-05 7.6E-10 74.6 16.5 128 121-291 162-291 (393)
138 3stp_A Galactonate dehydratase 98.3 2.7E-05 9.4E-10 74.4 17.1 135 121-292 179-315 (412)
139 2hzg_A Mandelate racemase/muco 98.3 1.7E-05 5.8E-10 75.6 15.3 140 121-302 145-290 (401)
140 2p8b_A Mandelate racemase/muco 98.3 2E-05 6.8E-10 74.2 15.5 145 122-315 142-289 (369)
141 1rpx_A Protein (ribulose-phosp 98.2 2.7E-05 9.1E-10 68.3 15.1 130 123-297 81-215 (230)
142 2htm_A Thiazole biosynthesis p 98.2 1.4E-05 4.8E-10 70.9 12.8 76 197-293 136-212 (268)
143 2yw3_A 4-hydroxy-2-oxoglutarat 98.2 6.4E-06 2.2E-10 71.4 10.4 56 246-303 139-194 (207)
144 1jvn_A Glutamine, bifunctional 98.2 3.2E-06 1.1E-10 84.0 9.3 93 194-305 281-396 (555)
145 2fli_A Ribulose-phosphate 3-ep 98.2 3.2E-05 1.1E-09 67.2 14.7 128 125-297 76-206 (220)
146 2qdd_A Mandelate racemase/muco 98.2 3E-05 1E-09 73.3 15.6 134 122-303 146-281 (378)
147 3o63_A Probable thiamine-phosp 98.2 2.4E-06 8.1E-11 76.0 7.2 76 205-297 152-227 (243)
148 1vcv_A Probable deoxyribose-ph 98.2 1.9E-05 6.5E-10 69.2 12.5 134 132-290 76-222 (226)
149 1tqj_A Ribulose-phosphate 3-ep 98.2 1.2E-05 4.1E-10 70.8 11.4 130 123-297 75-209 (230)
150 3rcy_A Mandelate racemase/muco 98.2 3.8E-05 1.3E-09 74.0 15.7 147 121-302 146-297 (433)
151 2w6r_A Imidazole glycerol phos 98.2 2.9E-06 9.7E-11 76.2 7.2 89 194-304 31-121 (266)
152 1nu5_A Chloromuconate cycloiso 98.2 5.3E-05 1.8E-09 71.3 16.2 137 122-302 143-282 (370)
153 4a29_A Engineered retro-aldol 98.2 7.9E-06 2.7E-10 72.4 9.7 60 245-305 190-249 (258)
154 3ozy_A Putative mandelate race 98.2 2.6E-05 8.8E-10 74.1 14.1 136 122-302 152-290 (389)
155 2o56_A Putative mandelate race 98.1 2.6E-05 8.8E-10 74.4 13.8 134 121-289 152-297 (407)
156 2ox4_A Putative mandelate race 98.1 2.4E-05 8.3E-10 74.5 13.5 136 121-291 146-293 (403)
157 1pii_A N-(5'phosphoribosyl)ant 98.1 1.4E-05 4.9E-10 76.9 11.9 144 129-322 126-269 (452)
158 2qde_A Mandelate racemase/muco 98.1 7.4E-05 2.5E-09 71.1 16.8 126 122-291 146-273 (397)
159 3jr2_A Hexulose-6-phosphate sy 98.1 1.5E-05 5.2E-10 69.5 11.1 125 124-293 74-199 (218)
160 1n7k_A Deoxyribose-phosphate a 98.1 7.4E-05 2.5E-09 65.8 15.4 117 135-289 101-222 (234)
161 1vc4_A Indole-3-glycerol phosp 98.1 1.1E-05 3.8E-10 72.1 10.3 125 127-302 122-249 (254)
162 2gdq_A YITF; mandelate racemas 98.1 2.3E-05 7.8E-10 74.2 13.1 124 123-289 141-267 (382)
163 1tkk_A Similar to chloromucona 98.1 8.7E-05 3E-09 69.7 16.9 146 122-315 141-290 (366)
164 2poz_A Putative dehydratase; o 98.1 2.1E-05 7.2E-10 74.7 12.7 134 121-289 137-281 (392)
165 2pp0_A L-talarate/galactarate 98.1 7.1E-05 2.4E-09 71.2 16.2 128 121-291 175-304 (398)
166 2e6f_A Dihydroorotate dehydrog 98.1 1.8E-05 6.3E-10 72.7 11.8 84 42-141 105-194 (314)
167 2gl5_A Putative dehydratase pr 98.1 3.4E-05 1.1E-09 73.7 14.0 135 121-289 150-300 (410)
168 3sjn_A Mandelate racemase/muco 98.1 2.5E-05 8.7E-10 73.7 13.0 128 123-291 148-278 (374)
169 2tps_A Protein (thiamin phosph 98.1 4.4E-06 1.5E-10 73.0 7.2 105 182-309 117-223 (227)
170 1xi3_A Thiamine phosphate pyro 98.1 8.1E-06 2.8E-10 70.6 8.8 74 205-297 125-198 (215)
171 2oz8_A MLL7089 protein; struct 98.1 5.7E-05 2E-09 71.6 15.3 124 121-288 145-273 (389)
172 1tzz_A Hypothetical protein L1 98.1 8.7E-05 3E-09 70.4 15.9 148 121-316 165-318 (392)
173 1i4n_A Indole-3-glycerol phosp 98.1 3.1E-05 1.1E-09 68.9 11.7 121 129-299 119-240 (251)
174 4e5t_A Mandelate racemase / mu 98.1 7.1E-05 2.4E-09 71.4 14.9 147 121-302 151-302 (404)
175 3inp_A D-ribulose-phosphate 3- 98.1 3.6E-05 1.2E-09 68.3 11.9 127 123-293 99-228 (246)
176 3eez_A Putative mandelate race 98.0 5.7E-05 1.9E-09 71.4 13.8 142 122-315 146-289 (378)
177 1ep3_A Dihydroorotate dehydrog 98.0 0.00011 3.6E-09 67.3 15.3 155 19-216 98-271 (311)
178 3rr1_A GALD, putative D-galact 98.0 3.6E-05 1.2E-09 73.5 12.4 135 122-291 126-262 (405)
179 2qq6_A Mandelate racemase/muco 98.0 8.4E-05 2.9E-09 71.0 15.0 134 121-288 149-291 (410)
180 3glc_A Aldolase LSRF; TIM barr 98.0 0.0002 6.8E-09 65.2 16.6 108 178-321 170-286 (295)
181 4gj1_A 1-(5-phosphoribosyl)-5- 98.0 6.7E-06 2.3E-10 73.1 6.7 89 194-305 32-120 (243)
182 3r4e_A Mandelate racemase/muco 98.0 3E-05 1E-09 74.4 11.2 136 122-291 144-304 (418)
183 4dwd_A Mandelate racemase/muco 98.0 0.00016 5.5E-09 68.7 15.9 133 122-291 140-274 (393)
184 3cwo_X Beta/alpha-barrel prote 98.0 3E-05 1E-09 67.2 10.1 95 194-315 131-225 (237)
185 2hxt_A L-fuconate dehydratase; 98.0 7.2E-05 2.5E-09 72.1 13.6 125 122-289 199-325 (441)
186 4e4u_A Mandalate racemase/muco 98.0 0.00012 4.2E-09 70.0 14.9 146 122-302 145-295 (412)
187 1tqx_A D-ribulose-5-phosphate 98.0 0.00021 7.3E-09 62.6 15.1 117 136-293 86-206 (227)
188 3ajx_A 3-hexulose-6-phosphate 98.0 0.00019 6.5E-09 61.6 14.5 125 123-293 67-191 (207)
189 2zad_A Muconate cycloisomerase 98.0 0.00014 4.6E-09 67.8 14.5 121 122-287 140-264 (345)
190 1p1x_A Deoxyribose-phosphate a 97.9 6.4E-05 2.2E-09 67.2 11.2 116 135-283 98-222 (260)
191 2a4a_A Deoxyribose-phosphate a 97.9 0.00017 6E-09 64.9 13.4 79 182-283 157-249 (281)
192 3bjs_A Mandelate racemase/muco 97.9 7.7E-05 2.6E-09 71.7 11.8 125 123-290 187-313 (428)
193 3sbf_A Mandelate racemase / mu 97.9 0.00027 9.1E-09 67.3 15.5 147 122-303 134-296 (401)
194 3ctl_A D-allulose-6-phosphate 97.9 0.00016 5.5E-09 63.6 12.9 128 123-293 70-201 (231)
195 3jva_A Dipeptide epimerase; en 97.9 0.00048 1.6E-08 64.4 16.8 145 122-315 140-286 (354)
196 2uv8_G Fatty acid synthase sub 97.9 7E-05 2.4E-09 83.7 12.5 60 233-294 737-808 (2051)
197 2ps2_A Putative mandelate race 97.9 0.00037 1.3E-08 65.5 15.7 135 121-302 146-282 (371)
198 1gte_A Dihydropyrimidine dehyd 97.9 0.00017 5.8E-09 76.7 14.8 155 19-216 634-817 (1025)
199 1q6o_A Humps, 3-keto-L-gulonat 97.9 0.00016 5.6E-09 62.7 12.3 123 127-293 74-196 (216)
200 3ddm_A Putative mandelate race 97.9 0.00016 5.5E-09 68.7 13.1 124 123-290 157-283 (392)
201 1sjd_A N-acylamino acid racema 97.8 0.00012 4E-09 68.9 12.0 122 121-289 141-264 (368)
202 3w01_A Heptaprenylglyceryl pho 97.8 9.3E-06 3.2E-10 71.4 4.1 57 246-305 174-230 (235)
203 1viz_A PCRB protein homolog; s 97.8 2E-05 6.8E-10 69.7 6.2 54 245-302 169-224 (240)
204 3v3w_A Starvation sensing prot 97.8 0.00011 3.7E-09 70.6 11.9 136 122-291 150-310 (424)
205 4gj1_A 1-(5-phosphoribosyl)-5- 97.8 5.7E-05 1.9E-09 67.1 8.8 88 194-304 152-239 (243)
206 3iv3_A Tagatose 1,6-diphosphat 97.8 0.00043 1.5E-08 63.9 14.8 176 125-324 115-317 (332)
207 3kts_A Glycerol uptake operon 97.8 1.6E-05 5.6E-10 67.7 4.8 48 247-296 140-187 (192)
208 2czd_A Orotidine 5'-phosphate 97.8 0.00021 7.2E-09 61.7 12.0 120 121-293 66-190 (208)
209 3tji_A Mandelate racemase/muco 97.8 0.00038 1.3E-08 66.7 14.8 146 122-302 155-316 (422)
210 2qr6_A IMP dehydrogenase/GMP r 97.8 0.00011 3.8E-09 69.7 11.0 101 156-289 140-240 (393)
211 3mqt_A Mandelate racemase/muco 97.8 0.00059 2E-08 64.8 16.0 140 121-302 152-295 (394)
212 3vcn_A Mannonate dehydratase; 97.8 0.0001 3.6E-09 70.7 10.8 136 122-291 151-311 (425)
213 2p10_A MLL9387 protein; putati 97.8 0.0016 5.4E-08 58.3 17.4 159 121-312 109-280 (286)
214 4e38_A Keto-hydroxyglutarate-a 97.8 0.0004 1.4E-08 61.0 12.9 111 123-292 96-206 (232)
215 3cu2_A Ribulose-5-phosphate 3- 97.7 0.00038 1.3E-08 61.4 12.9 131 122-296 81-225 (237)
216 3mkc_A Racemase; metabolic pro 97.7 0.00046 1.6E-08 65.5 14.2 130 121-291 157-290 (394)
217 2agk_A 1-(5-phosphoribosyl)-5- 97.7 2.1E-05 7.3E-10 70.5 4.5 82 194-306 39-125 (260)
218 1to3_A Putative aldolase YIHT; 97.7 0.00096 3.3E-08 61.1 15.2 130 124-293 112-259 (304)
219 3p3b_A Mandelate racemase/muco 97.7 0.00037 1.3E-08 66.1 12.8 133 121-290 148-287 (392)
220 2h6r_A Triosephosphate isomera 97.7 0.00023 7.9E-09 62.1 10.4 126 126-293 75-204 (219)
221 3tj4_A Mandelate racemase; eno 97.7 0.0011 3.7E-08 62.4 15.5 113 135-290 167-280 (372)
222 3gd6_A Muconate cycloisomerase 97.7 0.0015 5.1E-08 61.9 16.3 135 121-302 142-281 (391)
223 3i4k_A Muconate lactonizing en 97.6 0.0015 5.1E-08 61.7 16.1 124 135-302 164-288 (383)
224 3go2_A Putative L-alanine-DL-g 97.6 0.001 3.5E-08 63.5 14.6 133 122-290 144-294 (409)
225 1vhc_A Putative KHG/KDPG aldol 97.6 0.00069 2.3E-08 59.3 12.3 45 245-292 144-189 (224)
226 3ceu_A Thiamine phosphate pyro 97.6 5.2E-05 1.8E-09 65.7 4.6 48 245-293 130-177 (210)
227 3ro6_B Putative chloromuconate 97.6 0.00072 2.5E-08 63.2 12.7 136 122-302 141-279 (356)
228 3t6c_A RSPA, putative MAND fam 97.6 0.0023 7.9E-08 61.6 16.4 110 158-302 224-334 (440)
229 3q45_A Mandelate racemase/muco 97.5 0.0016 5.5E-08 61.2 14.7 145 122-315 141-287 (368)
230 1r0m_A N-acylamino acid racema 97.5 0.00056 1.9E-08 64.3 11.3 120 122-289 149-270 (375)
231 4eiv_A Deoxyribose-phosphate a 97.5 0.0015 5.2E-08 58.8 13.3 93 156-279 133-252 (297)
232 3my9_A Muconate cycloisomerase 97.5 0.0034 1.2E-07 59.0 16.7 146 123-316 148-295 (377)
233 2f6u_A GGGPS, (S)-3-O-geranylg 97.5 0.00016 5.6E-09 63.6 7.0 48 246-297 178-226 (234)
234 3tcs_A Racemase, putative; PSI 97.5 0.0051 1.7E-07 58.2 17.5 131 135-302 162-293 (388)
235 4e4f_A Mannonate dehydratase; 97.5 0.00041 1.4E-08 66.6 10.0 100 158-291 212-312 (426)
236 2zc8_A N-acylamino acid racema 97.5 0.00073 2.5E-08 63.4 11.6 142 122-316 142-285 (369)
237 3toy_A Mandelate racemase/muco 97.5 0.0026 8.9E-08 60.1 15.0 127 122-291 168-297 (383)
238 3ugv_A Enolase; enzyme functio 97.4 0.0067 2.3E-07 57.3 17.7 128 121-291 171-303 (390)
239 3dg3_A Muconate cycloisomerase 97.4 0.0077 2.6E-07 56.4 17.6 114 135-291 155-269 (367)
240 1chr_A Chloromuconate cycloiso 97.4 0.005 1.7E-07 57.7 16.2 114 135-291 158-272 (370)
241 3m47_A Orotidine 5'-phosphate 97.4 0.0035 1.2E-07 54.8 13.8 126 119-293 77-207 (228)
242 1qap_A Quinolinic acid phospho 97.3 0.0018 6E-08 59.0 11.7 59 205-291 225-283 (296)
243 3zen_D Fatty acid synthase; tr 97.3 0.00013 4.3E-09 84.5 4.7 159 120-293 466-651 (3089)
244 3mwc_A Mandelate racemase/muco 97.3 0.0046 1.6E-07 58.7 14.9 133 122-302 164-298 (400)
245 4dxk_A Mandelate racemase / mu 97.3 0.002 6.9E-08 61.2 12.2 123 135-291 167-294 (400)
246 3dip_A Enolase; structural gen 97.3 0.002 7E-08 61.4 12.2 123 135-291 171-298 (410)
247 3exr_A RMPD (hexulose-6-phosph 97.2 0.0018 6.2E-08 56.4 10.4 140 127-307 76-217 (221)
248 3r0u_A Enzyme of enolase super 97.2 0.013 4.3E-07 55.3 16.8 135 123-302 144-282 (379)
249 1x1o_A Nicotinate-nucleotide p 97.2 0.0021 7.3E-08 58.1 10.3 90 164-292 183-272 (286)
250 1dbt_A Orotidine 5'-phosphate 97.2 0.0064 2.2E-07 53.5 13.1 47 249-297 166-222 (239)
251 3i6e_A Muconate cycloisomerase 97.1 0.012 4E-07 55.6 15.7 132 135-315 163-295 (385)
252 1mxs_A KDPG aldolase; 2-keto-3 97.1 0.0061 2.1E-07 53.2 12.7 109 123-292 88-198 (225)
253 3khj_A Inosine-5-monophosphate 97.1 0.003 1E-07 59.1 11.0 92 159-288 82-173 (361)
254 1wbh_A KHG/KDPG aldolase; lyas 97.1 0.0071 2.4E-07 52.3 12.4 110 123-292 78-188 (214)
255 2yyu_A Orotidine 5'-phosphate 97.1 0.015 5.1E-07 51.4 14.7 44 249-293 167-220 (246)
256 3lab_A Putative KDPG (2-keto-3 97.1 0.0055 1.9E-07 53.0 11.3 93 179-304 12-104 (217)
257 2b7n_A Probable nicotinate-nuc 97.0 0.0014 4.8E-08 59.0 7.7 92 164-292 169-261 (273)
258 3tsm_A IGPS, indole-3-glycerol 97.0 0.0044 1.5E-07 55.6 10.4 82 194-302 80-161 (272)
259 1vc4_A Indole-3-glycerol phosp 97.0 0.0069 2.3E-07 53.9 11.6 83 194-304 66-148 (254)
260 1xg4_A Probable methylisocitra 96.9 0.048 1.6E-06 49.5 17.1 177 68-292 52-239 (295)
261 3fs2_A 2-dehydro-3-deoxyphosph 96.9 0.03 1E-06 50.7 15.4 110 178-308 154-290 (298)
262 3qja_A IGPS, indole-3-glycerol 96.9 0.0065 2.2E-07 54.6 10.8 74 194-292 73-146 (272)
263 3ve9_A Orotidine-5'-phosphate 96.9 0.0014 5E-08 56.8 6.3 87 193-310 115-204 (215)
264 2jbm_A Nicotinate-nucleotide p 96.8 0.0019 6.6E-08 58.9 7.0 33 259-292 244-276 (299)
265 4e38_A Keto-hydroxyglutarate-a 96.8 0.017 5.7E-07 50.6 12.7 90 181-303 35-124 (232)
266 3dgb_A Muconate cycloisomerase 96.8 0.049 1.7E-06 51.2 16.8 124 135-302 164-288 (382)
267 3lab_A Putative KDPG (2-keto-3 96.8 0.014 4.7E-07 50.5 11.8 125 120-304 25-155 (217)
268 4hnl_A Mandelate racemase/muco 96.8 0.011 3.8E-07 56.4 12.4 136 122-291 154-305 (421)
269 3sz8_A 2-dehydro-3-deoxyphosph 96.8 0.035 1.2E-06 49.9 14.8 115 178-312 133-275 (285)
270 3nl6_A Thiamine biosynthetic b 96.8 0.0034 1.2E-07 61.9 8.5 67 244-313 154-232 (540)
271 1wbh_A KHG/KDPG aldolase; lyas 96.7 0.013 4.4E-07 50.7 11.1 124 121-304 29-152 (214)
272 3ru6_A Orotidine 5'-phosphate 96.7 0.017 5.8E-07 52.5 12.1 85 196-315 161-255 (303)
273 3c2e_A Nicotinate-nucleotide p 96.7 0.0013 4.4E-08 59.9 4.6 32 260-292 250-281 (294)
274 4fo4_A Inosine 5'-monophosphat 96.7 0.0076 2.6E-07 56.5 10.0 96 158-288 82-177 (366)
275 1eix_A Orotidine 5'-monophosph 96.7 0.016 5.5E-07 51.1 11.6 47 249-297 173-229 (245)
276 3igs_A N-acetylmannosamine-6-p 96.7 0.0062 2.1E-07 53.4 8.7 82 191-306 34-125 (232)
277 3b0p_A TRNA-dihydrouridine syn 96.6 0.013 4.4E-07 54.6 11.2 146 43-216 70-226 (350)
278 4a35_A Mitochondrial enolase s 96.6 0.041 1.4E-06 52.8 14.7 126 122-291 202-332 (441)
279 3fcp_A L-Ala-D/L-Glu epimerase 96.5 0.12 4E-06 48.5 17.2 125 135-303 163-288 (381)
280 4dbe_A Orotidine 5'-phosphate 96.5 0.0065 2.2E-07 52.9 7.8 87 194-311 123-212 (222)
281 1vkf_A Glycerol uptake operon 96.5 0.0014 4.7E-08 55.4 3.2 42 247-294 142-183 (188)
282 4dye_A Isomerase; enolase fami 96.5 0.15 5.1E-06 48.2 17.5 133 122-302 169-304 (398)
283 3r2g_A Inosine 5'-monophosphat 96.4 0.0072 2.5E-07 56.4 7.9 71 193-288 99-169 (361)
284 1o4u_A Type II quinolic acid p 96.4 0.0034 1.2E-07 56.8 5.3 94 163-292 179-272 (285)
285 1qpo_A Quinolinate acid phosph 96.4 0.013 4.3E-07 53.0 8.8 92 163-291 181-272 (284)
286 3qfe_A Putative dihydrodipicol 96.3 0.022 7.6E-07 52.3 10.6 87 190-294 29-119 (318)
287 3tqv_A Nicotinate-nucleotide p 96.3 0.019 6.4E-07 51.8 9.6 90 163-292 185-274 (287)
288 4e8g_A Enolase, mandelate race 96.3 0.12 4.1E-06 48.7 15.6 144 122-315 165-310 (391)
289 1vs1_A 3-deoxy-7-phosphoheptul 96.3 0.59 2E-05 41.8 20.0 111 178-307 144-271 (276)
290 3fv9_G Mandelate racemase/muco 96.2 0.2 6.7E-06 47.1 16.9 138 122-302 146-286 (386)
291 3paj_A Nicotinate-nucleotide p 96.2 0.036 1.2E-06 50.6 11.3 90 162-291 217-306 (320)
292 3flu_A DHDPS, dihydrodipicolin 96.2 0.036 1.2E-06 50.3 11.0 88 190-296 25-116 (297)
293 1w0m_A TIM, triosephosphate is 96.2 0.035 1.2E-06 48.4 10.4 54 256-311 170-223 (226)
294 3daq_A DHDPS, dihydrodipicolin 96.2 0.034 1.2E-06 50.4 10.8 88 190-296 20-111 (292)
295 3l21_A DHDPS, dihydrodipicolin 96.2 0.027 9.2E-07 51.4 10.1 87 190-294 33-123 (304)
296 3q58_A N-acetylmannosamine-6-p 96.2 0.018 6.3E-07 50.3 8.6 81 191-305 34-124 (229)
297 3gr7_A NADPH dehydrogenase; fl 96.1 0.045 1.5E-06 50.7 11.7 156 32-215 134-307 (340)
298 1f6k_A N-acetylneuraminate lya 96.1 0.037 1.3E-06 50.1 10.9 89 190-297 21-114 (293)
299 3gnn_A Nicotinate-nucleotide p 96.1 0.023 7.9E-07 51.5 9.4 89 163-291 196-284 (298)
300 3qze_A DHDPS, dihydrodipicolin 96.1 0.029 1E-06 51.4 10.2 88 190-296 41-132 (314)
301 1xky_A Dihydrodipicolinate syn 96.1 0.035 1.2E-06 50.5 10.7 87 190-294 30-120 (301)
302 1vr6_A Phospho-2-dehydro-3-deo 96.1 0.48 1.6E-05 43.9 18.3 119 178-314 212-346 (350)
303 3l0g_A Nicotinate-nucleotide p 96.1 0.029 1E-06 50.7 9.8 89 163-291 194-282 (300)
304 2ehh_A DHDPS, dihydrodipicolin 96.1 0.047 1.6E-06 49.5 11.3 89 187-293 15-107 (294)
305 2wkj_A N-acetylneuraminate lya 96.1 0.029 1E-06 51.0 10.0 87 190-294 29-119 (303)
306 3s5o_A 4-hydroxy-2-oxoglutarat 96.1 0.045 1.6E-06 49.9 11.1 87 190-294 32-122 (307)
307 3cpr_A Dihydrodipicolinate syn 96.1 0.045 1.5E-06 49.9 11.0 89 190-297 34-126 (304)
308 3na8_A Putative dihydrodipicol 96.0 0.031 1E-06 51.2 9.9 88 190-296 42-133 (315)
309 3tak_A DHDPS, dihydrodipicolin 96.0 0.04 1.4E-06 49.9 10.5 88 190-296 19-110 (291)
310 1yxy_A Putative N-acetylmannos 96.0 0.064 2.2E-06 46.5 11.5 116 121-285 37-157 (234)
311 2yxg_A DHDPS, dihydrodipicolin 96.0 0.048 1.6E-06 49.3 11.0 90 187-294 15-108 (289)
312 4hpn_A Putative uncharacterize 96.0 0.097 3.3E-06 48.9 13.5 126 120-289 143-270 (378)
313 3tml_A 2-dehydro-3-deoxyphosph 96.0 0.18 6E-06 45.5 14.4 111 178-309 130-273 (288)
314 1vli_A Spore coat polysacchari 96.0 0.19 6.6E-06 47.0 15.1 197 73-310 39-280 (385)
315 2wqp_A Polysialic acid capsule 96.0 0.34 1.2E-05 44.8 16.6 115 178-314 147-272 (349)
316 3b4u_A Dihydrodipicolinate syn 96.0 0.039 1.3E-06 50.0 10.1 87 190-294 21-111 (294)
317 3si9_A DHDPS, dihydrodipicolin 95.9 0.038 1.3E-06 50.6 10.0 88 190-296 40-131 (315)
318 3nvt_A 3-deoxy-D-arabino-heptu 95.9 0.55 1.9E-05 44.1 18.1 111 178-308 248-376 (385)
319 1o5k_A DHDPS, dihydrodipicolin 95.9 0.04 1.4E-06 50.2 10.2 90 187-294 27-120 (306)
320 2rfg_A Dihydrodipicolinate syn 95.9 0.042 1.4E-06 49.9 10.2 87 190-294 18-108 (297)
321 1ypf_A GMP reductase; GUAC, pu 95.9 0.046 1.6E-06 50.4 10.6 83 178-288 93-177 (336)
322 1zco_A 2-dehydro-3-deoxyphosph 95.9 0.72 2.5E-05 40.9 18.0 112 178-307 129-256 (262)
323 2r8w_A AGR_C_1641P; APC7498, d 95.9 0.042 1.4E-06 50.7 10.1 87 190-294 52-142 (332)
324 3m5v_A DHDPS, dihydrodipicolin 95.9 0.044 1.5E-06 49.8 10.1 88 190-296 25-117 (301)
325 3ih1_A Methylisocitrate lyase; 95.9 0.6 2.1E-05 42.3 17.5 148 100-292 90-247 (305)
326 3sr7_A Isopentenyl-diphosphate 95.9 0.062 2.1E-06 50.2 11.2 92 178-288 143-237 (365)
327 3e96_A Dihydrodipicolinate syn 95.8 0.027 9.3E-07 51.6 8.4 84 190-292 30-117 (316)
328 2v9d_A YAGE; dihydrodipicolini 95.8 0.053 1.8E-06 50.2 10.4 87 190-294 49-139 (343)
329 3ik4_A Mandelate racemase/muco 95.8 0.21 7.1E-06 46.5 14.5 126 122-291 144-273 (365)
330 3a5f_A Dihydrodipicolinate syn 95.7 0.029 1E-06 50.7 8.3 86 190-293 19-108 (291)
331 3hgj_A Chromate reductase; TIM 95.7 0.16 5.3E-06 47.1 13.5 154 34-215 144-318 (349)
332 3d0c_A Dihydrodipicolinate syn 95.7 0.027 9.1E-07 51.6 7.9 87 190-297 30-121 (314)
333 2v82_A 2-dehydro-3-deoxy-6-pho 95.7 0.063 2.2E-06 45.8 9.9 82 179-289 6-88 (212)
334 3l5l_A Xenobiotic reductase A; 95.7 0.084 2.9E-06 49.2 11.4 162 32-215 148-325 (363)
335 1hg3_A Triosephosphate isomera 95.7 0.051 1.7E-06 47.3 9.2 48 251-300 169-216 (225)
336 2ojp_A DHDPS, dihydrodipicolin 95.6 0.029 1E-06 50.7 7.9 87 190-294 19-109 (292)
337 4fxs_A Inosine-5'-monophosphat 95.6 0.02 6.7E-07 55.9 7.0 69 195-288 232-300 (496)
338 4avf_A Inosine-5'-monophosphat 95.6 0.025 8.7E-07 55.0 7.7 70 194-288 229-298 (490)
339 3vkj_A Isopentenyl-diphosphate 95.5 0.1 3.6E-06 48.7 11.4 134 120-288 76-218 (368)
340 2vc6_A MOSA, dihydrodipicolina 95.5 0.053 1.8E-06 49.0 9.1 86 190-293 18-107 (292)
341 3dz1_A Dihydrodipicolinate syn 95.5 0.086 2.9E-06 48.2 10.6 83 190-291 26-112 (313)
342 1wa3_A 2-keto-3-deoxy-6-phosph 95.5 0.11 3.9E-06 43.9 10.8 82 181-291 11-92 (205)
343 2ffc_A Orotidine 5-monophospha 95.5 0.57 2E-05 43.3 16.1 62 248-311 279-349 (353)
344 3fok_A Uncharacterized protein 95.5 0.25 8.6E-06 44.6 13.3 120 126-293 134-278 (307)
345 1z41_A YQJM, probable NADH-dep 95.5 0.13 4.6E-06 47.3 12.0 153 35-215 137-307 (338)
346 3ldv_A Orotidine 5'-phosphate 95.5 0.32 1.1E-05 43.0 13.9 66 195-293 164-239 (255)
347 3fkr_A L-2-keto-3-deoxyarabona 95.5 0.055 1.9E-06 49.4 9.1 85 190-292 26-114 (309)
348 4dpp_A DHDPS 2, dihydrodipicol 95.4 0.044 1.5E-06 51.1 8.4 86 190-293 77-166 (360)
349 1y0e_A Putative N-acetylmannos 95.4 0.07 2.4E-06 45.8 9.2 72 191-296 21-102 (223)
350 3h5d_A DHDPS, dihydrodipicolin 95.3 0.086 2.9E-06 48.1 9.9 88 190-296 25-117 (311)
351 3eoo_A Methylisocitrate lyase; 95.3 0.39 1.3E-05 43.5 14.1 127 160-306 68-206 (298)
352 3iwp_A Copper homeostasis prot 95.3 0.2 7E-06 44.9 11.9 131 118-288 106-238 (287)
353 2bdq_A Copper homeostasis prot 95.3 0.46 1.6E-05 41.0 13.6 149 100-288 55-207 (224)
354 1p0k_A Isopentenyl-diphosphate 95.2 0.17 5.9E-06 46.7 11.8 93 178-288 115-209 (349)
355 3ih1_A Methylisocitrate lyase; 95.2 0.23 8E-06 45.1 12.2 127 160-306 74-210 (305)
356 4h1z_A Enolase Q92ZS5; dehydra 95.1 0.26 8.8E-06 46.7 12.9 122 123-288 190-313 (412)
357 1jcn_A Inosine monophosphate d 95.1 0.043 1.5E-06 53.7 7.6 69 195-288 256-324 (514)
358 2gou_A Oxidoreductase, FMN-bin 95.1 0.3 1E-05 45.5 13.1 150 34-215 153-322 (365)
359 3eb2_A Putative dihydrodipicol 95.1 0.04 1.4E-06 50.1 6.8 88 190-296 22-113 (300)
360 2chr_A Chloromuconate cycloiso 95.0 1.1 3.9E-05 41.4 17.0 135 124-302 146-282 (370)
361 1zfj_A Inosine monophosphate d 95.0 0.039 1.3E-06 53.6 7.0 81 180-288 222-302 (491)
362 3ffs_A Inosine-5-monophosphate 95.0 0.033 1.1E-06 52.7 6.2 67 196-288 146-212 (400)
363 4h83_A Mandelate racemase/muco 95.0 0.58 2E-05 43.9 14.9 124 122-290 168-293 (388)
364 1vhc_A Putative KHG/KDPG aldol 95.0 0.37 1.3E-05 41.7 12.5 79 181-288 18-96 (224)
365 1gox_A (S)-2-hydroxy-acid oxid 95.0 0.14 4.6E-06 47.9 10.3 106 179-289 122-254 (370)
366 1eep_A Inosine 5'-monophosphat 94.9 0.079 2.7E-06 50.1 8.8 79 181-287 143-221 (404)
367 2vc6_A MOSA, dihydrodipicolina 94.9 1.2 4E-05 40.1 16.0 87 119-219 20-106 (292)
368 3f4w_A Putative hexulose 6 pho 94.8 0.3 1E-05 41.3 11.5 119 123-290 13-136 (211)
369 1wuf_A Hypothetical protein LI 94.8 0.12 4.2E-06 48.6 9.7 121 122-290 162-284 (393)
370 3usb_A Inosine-5'-monophosphat 94.8 0.1 3.5E-06 51.0 9.4 81 180-288 245-325 (511)
371 3tfx_A Orotidine 5'-phosphate 94.8 0.11 3.7E-06 46.2 8.7 80 195-307 146-237 (259)
372 1vrd_A Inosine-5'-monophosphat 94.7 0.062 2.1E-06 52.2 7.7 70 194-288 237-306 (494)
373 1o60_A 2-dehydro-3-deoxyphosph 94.7 0.14 4.8E-06 46.3 9.3 112 178-309 131-270 (292)
374 4af0_A Inosine-5'-monophosphat 94.6 0.09 3.1E-06 51.2 8.3 71 194-289 281-351 (556)
375 2ekc_A AQ_1548, tryptophan syn 94.6 0.36 1.2E-05 42.7 11.7 111 189-316 27-149 (262)
376 3jr2_A Hexulose-6-phosphate sy 94.6 0.7 2.4E-05 39.5 13.2 120 122-289 18-140 (218)
377 1twd_A Copper homeostasis prot 94.6 0.4 1.4E-05 42.3 11.6 145 100-288 52-198 (256)
378 3tr2_A Orotidine 5'-phosphate 94.5 0.1 3.6E-06 45.7 7.8 67 194-293 145-221 (239)
379 1xky_A Dihydrodipicolinate syn 94.5 0.73 2.5E-05 41.7 13.8 87 119-219 32-118 (301)
380 1mxs_A KDPG aldolase; 2-keto-3 94.4 0.59 2E-05 40.5 12.4 79 181-288 27-105 (225)
381 3flu_A DHDPS, dihydrodipicolin 94.4 0.86 2.9E-05 41.1 14.0 87 119-219 27-113 (297)
382 2ojp_A DHDPS, dihydrodipicolin 94.4 0.87 3E-05 40.9 14.0 87 119-219 21-107 (292)
383 3qze_A DHDPS, dihydrodipicolin 94.4 0.86 3E-05 41.4 14.0 87 119-219 43-129 (314)
384 2qkf_A 3-deoxy-D-manno-octulos 94.4 0.15 5.3E-06 45.7 8.7 112 178-309 128-267 (280)
385 3vnd_A TSA, tryptophan synthas 94.3 0.31 1.1E-05 43.4 10.6 103 178-290 16-132 (267)
386 1xg4_A Probable methylisocitra 94.3 0.91 3.1E-05 41.0 13.8 129 160-307 63-203 (295)
387 3d0c_A Dihydrodipicolinate syn 94.3 0.63 2.2E-05 42.3 12.9 86 119-219 32-117 (314)
388 3na8_A Putative dihydrodipicol 94.2 0.76 2.6E-05 41.9 13.1 87 119-219 44-130 (315)
389 3tak_A DHDPS, dihydrodipicolin 94.1 0.9 3.1E-05 40.8 13.5 87 119-219 21-107 (291)
390 3ekg_A Mandelate racemase/muco 94.1 0.34 1.2E-05 45.8 11.0 117 135-289 174-294 (404)
391 3cpr_A Dihydrodipicolinate syn 94.1 0.9 3.1E-05 41.1 13.4 87 119-219 36-122 (304)
392 2yxg_A DHDPS, dihydrodipicolin 94.1 0.79 2.7E-05 41.1 13.0 87 119-219 20-106 (289)
393 3eoo_A Methylisocitrate lyase; 94.1 2.7 9.3E-05 37.9 16.4 151 99-292 83-243 (298)
394 2gjl_A Hypothetical protein PA 94.0 0.25 8.6E-06 45.2 9.7 114 123-287 29-144 (328)
395 3daq_A DHDPS, dihydrodipicolin 94.0 0.87 3E-05 40.9 13.2 87 119-219 22-108 (292)
396 2r8w_A AGR_C_1641P; APC7498, d 94.0 0.78 2.7E-05 42.1 13.0 87 119-219 54-140 (332)
397 2ehh_A DHDPS, dihydrodipicolin 94.0 0.94 3.2E-05 40.7 13.3 86 120-219 21-106 (294)
398 3nav_A Tryptophan synthase alp 94.0 0.23 7.7E-06 44.4 8.9 120 179-316 19-152 (271)
399 3si9_A DHDPS, dihydrodipicolin 94.0 0.95 3.2E-05 41.2 13.3 87 119-219 42-128 (315)
400 3kru_A NADH:flavin oxidoreduct 93.9 0.35 1.2E-05 44.7 10.5 156 32-215 133-307 (343)
401 1geq_A Tryptophan synthase alp 93.9 0.21 7.3E-06 43.5 8.7 100 181-290 6-117 (248)
402 3l21_A DHDPS, dihydrodipicolin 93.9 0.7 2.4E-05 41.8 12.4 87 119-219 35-121 (304)
403 3g8r_A Probable spore coat pol 93.9 1.8 6.1E-05 40.0 15.0 115 178-315 134-261 (350)
404 3m5v_A DHDPS, dihydrodipicolin 93.9 0.98 3.3E-05 40.8 13.3 87 119-219 27-114 (301)
405 3bo9_A Putative nitroalkan dio 93.9 0.26 8.8E-06 45.2 9.4 111 123-287 40-150 (326)
406 1o5k_A DHDPS, dihydrodipicolin 93.9 0.84 2.9E-05 41.3 12.8 87 119-219 32-118 (306)
407 1s2w_A Phosphoenolpyruvate pho 93.8 1 3.5E-05 40.6 13.1 132 160-307 64-207 (295)
408 2z6i_A Trans-2-enoyl-ACP reduc 93.8 0.41 1.4E-05 43.9 10.8 111 123-287 26-136 (332)
409 2ozt_A TLR1174 protein; struct 93.8 0.87 3E-05 41.6 13.0 113 135-290 131-247 (332)
410 2c6q_A GMP reductase 2; TIM ba 93.8 0.13 4.5E-06 47.7 7.4 42 245-288 148-189 (351)
411 3ajx_A 3-hexulose-6-phosphate 93.8 0.81 2.8E-05 38.5 11.9 118 122-288 12-134 (207)
412 2v9d_A YAGE; dihydrodipicolini 93.8 0.82 2.8E-05 42.1 12.7 87 119-219 51-137 (343)
413 2rfg_A Dihydrodipicolinate syn 93.8 0.83 2.8E-05 41.2 12.5 87 119-219 20-106 (297)
414 1qop_A Tryptophan synthase alp 93.8 0.4 1.4E-05 42.6 10.2 94 187-290 25-131 (268)
415 1mzh_A Deoxyribose-phosphate a 93.7 0.15 5E-06 44.2 7.1 115 55-213 83-202 (225)
416 1f6k_A N-acetylneuraminate lya 93.7 0.91 3.1E-05 40.8 12.7 87 119-219 23-110 (293)
417 2r14_A Morphinone reductase; H 93.7 0.55 1.9E-05 43.9 11.5 153 34-215 158-328 (377)
418 3v5c_A Mandelate racemase/muco 93.7 1.1 3.7E-05 42.1 13.6 133 121-290 148-287 (392)
419 3sgz_A Hydroxyacid oxidase 2; 93.7 0.43 1.5E-05 44.2 10.6 106 178-288 120-245 (352)
420 3e96_A Dihydrodipicolinate syn 93.6 0.67 2.3E-05 42.2 11.7 85 120-219 33-117 (316)
421 3u9i_A Mandelate racemase/muco 93.6 2.4 8.1E-05 39.8 15.8 134 122-291 166-303 (393)
422 2ze3_A DFA0005; organic waste 93.6 0.66 2.2E-05 41.5 11.3 122 160-306 61-203 (275)
423 1vhn_A Putative flavin oxidore 93.6 0.13 4.3E-06 47.1 6.8 137 43-215 71-213 (318)
424 3qfe_A Putative dihydrodipicol 93.6 0.94 3.2E-05 41.3 12.6 84 120-217 32-115 (318)
425 2hmc_A AGR_L_411P, dihydrodipi 93.6 0.29 9.8E-06 45.3 9.1 84 190-294 44-131 (344)
426 2nwr_A 2-dehydro-3-deoxyphosph 93.5 1.1 3.8E-05 39.8 12.6 110 178-309 117-253 (267)
427 4ab4_A Xenobiotic reductase B; 93.5 1.1 3.6E-05 41.8 12.9 147 33-215 144-308 (362)
428 1vyr_A Pentaerythritol tetrani 93.4 0.95 3.2E-05 42.1 12.6 152 34-215 153-323 (364)
429 3fkr_A L-2-keto-3-deoxyarabona 93.4 1.4 4.8E-05 39.9 13.5 87 119-219 28-114 (309)
430 1qwg_A PSL synthase;, (2R)-pho 93.2 1.2 4.2E-05 39.0 12.1 133 49-218 32-171 (251)
431 2nli_A Lactate oxidase; flavoe 93.2 0.6 2.1E-05 43.5 10.9 106 178-288 131-257 (368)
432 2ze3_A DFA0005; organic waste 93.2 4.4 0.00015 36.0 19.6 174 68-292 50-236 (275)
433 3s5o_A 4-hydroxy-2-oxoglutarat 93.1 0.86 2.9E-05 41.3 11.6 85 123-219 35-120 (307)
434 1wue_A Mandelate racemase/muco 93.1 0.73 2.5E-05 43.1 11.4 122 122-291 162-285 (386)
435 2hjp_A Phosphonopyruvate hydro 93.1 1.2 4.1E-05 40.1 12.3 129 160-307 60-203 (290)
436 4adt_A Pyridoxine biosynthetic 93.0 0.13 4.4E-06 46.7 5.8 74 196-285 31-104 (297)
437 3s5s_A Mandelate racemase/muco 93.0 1.8 6.2E-05 40.5 14.0 126 123-290 146-273 (389)
438 3vdg_A Probable glucarate dehy 93.0 3.3 0.00011 39.5 15.9 123 122-291 194-319 (445)
439 3a5f_A Dihydrodipicolinate syn 92.9 0.83 2.8E-05 41.0 11.1 87 119-219 21-107 (291)
440 2hsa_B 12-oxophytodienoate red 92.8 2.7 9.4E-05 39.5 14.9 160 34-215 163-348 (402)
441 1s2w_A Phosphoenolpyruvate pho 92.8 5.3 0.00018 35.9 17.9 178 68-292 53-242 (295)
442 1u83_A Phosphosulfolactate syn 92.7 0.63 2.2E-05 41.3 9.6 128 49-218 59-195 (276)
443 3b4u_A Dihydrodipicolinate syn 92.7 1.3 4.3E-05 39.9 11.9 87 119-219 23-109 (294)
444 2fli_A Ribulose-phosphate 3-ep 92.7 0.19 6.5E-06 42.9 6.2 80 191-291 14-94 (220)
445 3gka_A N-ethylmaleimide reduct 92.5 1.6 5.4E-05 40.6 12.6 145 34-215 153-316 (361)
446 1vqt_A Orotidine 5'-phosphate 92.5 0.77 2.6E-05 39.3 9.8 42 248-293 147-197 (213)
447 2wkj_A N-acetylneuraminate lya 92.5 1.9 6.6E-05 38.8 12.9 87 119-219 31-117 (303)
448 3eb2_A Putative dihydrodipicol 92.4 0.79 2.7E-05 41.4 10.2 87 119-219 24-110 (300)
449 2r91_A 2-keto-3-deoxy-(6-phosp 92.4 0.88 3E-05 40.7 10.4 87 187-293 13-102 (286)
450 3va8_A Probable dehydratase; e 92.3 5.8 0.0002 37.8 16.7 122 122-290 192-316 (445)
451 1p4c_A L(+)-mandelate dehydrog 92.2 1.3 4.3E-05 41.5 11.6 104 179-288 123-253 (380)
452 3lye_A Oxaloacetate acetyl hyd 92.2 2.1 7.3E-05 38.7 12.6 130 160-307 71-214 (307)
453 3cyj_A Mandelate racemase/muco 92.1 2.7 9.1E-05 38.9 13.8 123 123-288 146-270 (372)
454 1ps9_A 2,4-dienoyl-COA reducta 92.1 1.2 4.2E-05 44.6 12.2 158 35-215 134-310 (671)
455 1kbi_A Cytochrome B2, L-LCR; f 92.0 0.58 2E-05 45.6 9.3 104 179-287 246-370 (511)
456 3fa4_A 2,3-dimethylmalate lyas 92.0 6.7 0.00023 35.3 16.7 154 99-292 80-243 (302)
457 1qwg_A PSL synthase;, (2R)-pho 92.0 0.98 3.4E-05 39.6 9.8 129 120-289 26-169 (251)
458 3lye_A Oxaloacetate acetyl hyd 91.9 6.9 0.00024 35.3 15.9 154 100-292 89-251 (307)
459 1w3i_A EDA, 2-keto-3-deoxy glu 91.9 0.84 2.9E-05 41.1 9.8 83 190-293 17-103 (293)
460 3qld_A Mandelate racemase/muco 91.9 3.7 0.00013 38.3 14.5 122 122-291 150-273 (388)
461 3aty_A Tcoye, prostaglandin F2 91.9 5.2 0.00018 37.2 15.5 155 30-215 161-336 (379)
462 2hjp_A Phosphonopyruvate hydro 91.8 6.9 0.00023 35.0 17.3 180 69-292 50-239 (290)
463 2tps_A Protein (thiamin phosph 91.8 1.1 3.9E-05 38.1 10.1 112 122-289 33-144 (227)
464 2qiw_A PEP phosphonomutase; st 91.7 0.58 2E-05 41.3 8.2 121 160-306 65-203 (255)
465 2p3z_A L-rhamnonate dehydratas 91.7 1.8 6E-05 41.0 12.1 99 160-290 208-306 (415)
466 1zlp_A PSR132, petal death pro 91.7 2.5 8.6E-05 38.4 12.6 127 160-306 85-224 (318)
467 3fxg_A Rhamnonate dehydratase; 91.7 1 3.6E-05 43.1 10.5 120 135-290 180-300 (455)
468 4aaj_A N-(5'-phosphoribosyl)an 91.6 2 7E-05 37.1 11.5 134 123-307 82-224 (228)
469 1q7z_A 5-methyltetrahydrofolat 91.6 3 0.0001 41.1 14.1 135 39-212 122-269 (566)
470 3vav_A 3-methyl-2-oxobutanoate 91.6 2 6.7E-05 38.3 11.5 87 123-217 39-128 (275)
471 3o63_A Probable thiamine-phosp 91.5 0.94 3.2E-05 39.6 9.3 85 159-290 80-164 (243)
472 3h5d_A DHDPS, dihydrodipicolin 91.5 2.3 7.8E-05 38.5 12.2 87 119-219 27-114 (311)
473 3qw4_B UMP synthase; N-termina 91.4 2.1 7.3E-05 40.9 12.4 200 39-309 29-252 (453)
474 3dz1_A Dihydrodipicolinate syn 91.3 6.9 0.00024 35.3 15.3 84 119-217 28-111 (313)
475 4g8t_A Glucarate dehydratase; 91.3 10 0.00034 36.3 17.2 113 135-288 218-331 (464)
476 3b8i_A PA4872 oxaloacetate dec 91.2 5.1 0.00017 35.8 14.0 177 69-292 57-238 (287)
477 2nuw_A 2-keto-3-deoxygluconate 91.2 0.94 3.2E-05 40.6 9.2 83 190-293 17-103 (288)
478 1i4n_A Indole-3-glycerol phosp 91.1 0.87 3E-05 40.1 8.7 111 178-322 100-218 (251)
479 1o94_A Tmadh, trimethylamine d 91.1 1.1 3.7E-05 45.5 10.7 154 40-215 146-321 (729)
480 1u83_A Phosphosulfolactate syn 91.1 1.9 6.4E-05 38.3 10.7 126 120-289 53-193 (276)
481 1icp_A OPR1, 12-oxophytodienoa 91.0 1.4 4.8E-05 41.1 10.5 154 35-215 160-330 (376)
482 3fa4_A 2,3-dimethylmalate lyas 90.9 3.1 0.00011 37.5 12.3 128 160-306 64-205 (302)
483 3mzn_A Glucarate dehydratase; 90.9 3.4 0.00012 39.4 13.3 126 122-288 183-311 (450)
484 3l5a_A NADH/flavin oxidoreduct 90.9 2.8 9.4E-05 39.7 12.5 166 32-215 160-346 (419)
485 1o66_A 3-methyl-2-oxobutanoate 90.8 0.97 3.3E-05 40.3 8.7 79 123-216 27-116 (275)
486 1tqj_A Ribulose-phosphate 3-ep 90.7 0.2 6.7E-06 43.6 4.1 120 121-290 18-143 (230)
487 1xi3_A Thiamine phosphate pyro 90.7 1.9 6.5E-05 36.2 10.4 109 122-289 28-136 (215)
488 3bw2_A 2-nitropropane dioxygen 90.7 2 6.7E-05 39.8 11.2 61 195-287 111-171 (369)
489 3n3m_A Orotidine 5'-phosphate 90.5 2.3 8E-05 39.0 11.2 63 249-312 268-338 (342)
490 1pii_A N-(5'phosphoribosyl)ant 90.4 1.5 5.3E-05 41.9 10.4 120 163-323 99-225 (452)
491 3p0w_A Mandelate racemase/muco 90.4 2.7 9.3E-05 40.4 12.2 126 122-288 201-329 (470)
492 2nzl_A Hydroxyacid oxidase 1; 90.4 0.92 3.2E-05 42.6 8.7 105 179-288 146-280 (392)
493 3inp_A D-ribulose-phosphate 3- 90.2 1.5 5.1E-05 38.5 9.3 143 122-315 42-194 (246)
494 2pge_A MENC; OSBS, NYSGXRC, PS 90.2 1.8 6.3E-05 40.2 10.5 126 123-290 164-293 (377)
495 3vc5_A Mandelate racemase/muco 90.2 7.4 0.00025 37.0 14.9 122 122-290 189-313 (441)
496 3pfr_A Mandelate racemase/muco 90.1 4 0.00014 39.0 13.1 126 122-288 186-314 (455)
497 4a29_A Engineered retro-aldol 89.9 2.9 0.0001 36.8 10.9 73 194-292 65-137 (258)
498 3b8i_A PA4872 oxaloacetate dec 89.9 4.5 0.00015 36.2 12.4 126 160-305 67-202 (287)
499 1zlp_A PSR132, petal death pro 89.9 11 0.00038 34.2 18.1 177 69-292 75-261 (318)
500 1rd5_A Tryptophan synthase alp 89.9 1.4 4.7E-05 38.7 9.0 98 181-288 19-125 (262)
No 1
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=100.00 E-value=2.8e-42 Score=326.66 Aligned_cols=255 Identities=46% Similarity=0.711 Sum_probs=210.6
Q ss_pred CCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEcc
Q psy5880 64 SSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNV 143 (328)
Q Consensus 64 sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~ 143 (328)
+.-|..|+.+.+....++++....++.. ... +...| ..+|++.|+.+++.+++|+++++.+.+++|+||||+
T Consensus 113 ~~iN~~G~~N~G~~~~~~~l~~~~~~~~-~~~-~~~~p------v~vniggn~~t~~~~~dy~~~~~~~~~~ad~ielNi 184 (367)
T 3zwt_A 113 AVINRYGFNSHGLSVVEHRLRARQQKQA-KLT-EDGLP------LGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNV 184 (367)
T ss_dssp EEEECCCCCBCCHHHHHHHHHTTHHHHH-HHH-HTTCC------EEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEEC
T ss_pred ceeeccCCCCccHHHHHHHHHHHhhhcc-ccc-cCCce------EEEEEecCCCCCcCHHHHHHHHHHHhhhCCEEEEEC
Confidence 4557778777765444444433222110 000 00124 455666776666789999999999988899999999
Q ss_pred CCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchh
Q psy5880 144 SSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYE 223 (328)
Q Consensus 144 scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~ 223 (328)
||||++|.+.+++++.+.+++++|+++++.+.+..++||+||++++++.+++.++++.+ +++|+|+|+++||+.+++.
T Consensus 185 sCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~--~~aGadgi~v~ntt~~r~~ 262 (367)
T 3zwt_A 185 SSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVV--KELGIDGLIVTNTTVSRPA 262 (367)
T ss_dssp CCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHH--HHHTCCEEEECCCBSCCCT
T ss_pred CCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHHHH--HHcCCCEEEEeCCCccccc
Confidence 99999988888899999999999998765432225799999999999988999999999 9999999999999876544
Q ss_pred hhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 224 YLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 224 ~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
...+....+.||+||++++|.++++++++++.+++++|||++|||+|++|+.+++++|||+||+||+++++||++++++.
T Consensus 263 ~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~~gP~~~~~i~ 342 (367)
T 3zwt_A 263 GLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVK 342 (367)
T ss_dssp TCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHH
T ss_pred ccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHhcCcHHHHHHH
Confidence 44445556789999999999999999999999965699999999999999999999999999999999888999999999
Q ss_pred HHHHHHHHHhCCCCHHHHhcccccC
Q psy5880 304 SELEELLQKEGYNSVSQAVGAAHKS 328 (328)
Q Consensus 304 ~~l~~~m~~~g~~si~e~~G~~~~~ 328 (328)
++++.||+++||+|++|++|.++++
T Consensus 343 ~~l~~~m~~~G~~~i~e~~G~~~~~ 367 (367)
T 3zwt_A 343 RELEALLKEQGFGGVTDAIGADHRR 367 (367)
T ss_dssp HHHHHHHHHTTCSSHHHHTTGGGTC
T ss_pred HHHHHHHHHcCCCCHHHhhCccccC
Confidence 9999999999999999999999875
No 2
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=100.00 E-value=5.8e-42 Score=326.39 Aligned_cols=218 Identities=41% Similarity=0.673 Sum_probs=185.6
Q ss_pred cCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcC----------
Q psy5880 107 APDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAV---------- 176 (328)
Q Consensus 107 ~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~---------- 176 (328)
+..+|+++|+.+++.++||+++++++.+++|+||||+||||++|.+.+++++.+.+++++|+++++.+.+
T Consensus 183 ~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~ 262 (415)
T 3i65_A 183 IVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLW 262 (415)
T ss_dssp EEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHC
T ss_pred eEEEEeccccCccccHHHHHHHHHHHHhhCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 4567888887777789999999999998899999999999999999899999999999999988542210
Q ss_pred ---CCCCC-EEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHH
Q psy5880 177 ---KPLPP-ILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEM 252 (328)
Q Consensus 177 ---~~~~P-v~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i 252 (328)
..++| |+|||+|+++.+++.++|+.+ +++|+|+|+++||+..+.+.. ......||+||++++|.++++++++
T Consensus 263 ~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a--~~aGaDgIiv~Ntt~~r~dl~--~~~~~~GGlSG~a~~p~al~~I~~v 338 (415)
T 3i65_A 263 FNTTKKKPLVFVKLAPDLNQEQKKEIADVL--LETNIDGMIISNTTTQINDIK--SFENKKGGVSGAKLKDISTKFICEM 338 (415)
T ss_dssp CSSSSSCCEEEEEECSCCCHHHHHHHHHHH--HHHTCSEEEECCCBSCCCCCG--GGTTCCSEEEEGGGHHHHHHHHHHH
T ss_pred cccCCCCCeEEEEecCCCCHHHHHHHHHHH--HHcCCcEEEEeCCCccccccc--ccccccCCcCCccchHHHHHHHHHH
Confidence 13689 999999999988899999999 999999999999987543211 1345679999999999999999999
Q ss_pred HHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHHhcccccC
Q psy5880 253 YKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHKS 328 (328)
Q Consensus 253 ~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~G~~~~~ 328 (328)
++.+++++|||++|||+|++|+.+++++|||+|||||+++++||+++++++++|++||+++||+|++|++|.++++
T Consensus 339 ~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~GP~~~~~i~~~L~~~l~~~G~~si~e~~G~~~~~ 414 (415)
T 3i65_A 339 YNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYNLKEAIGRKHSK 414 (415)
T ss_dssp HHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHTTCSSSTTTTTTTCC-
T ss_pred HHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcCHHHHHHHHHHHHHHHHHcCCCCHHHHhChhccC
Confidence 9999666999999999999999999999999999999999999999999999999999999999999999998764
No 3
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=100.00 E-value=1.1e-38 Score=307.58 Aligned_cols=216 Identities=41% Similarity=0.683 Sum_probs=187.9
Q ss_pred CCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcC-----------
Q psy5880 108 PDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAV----------- 176 (328)
Q Consensus 108 ~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~----------- 176 (328)
..+|++.|+.+++.+++|+++++++.+++|+||||+||||++|.+.+++++.+.+++++|+++++.+..
T Consensus 182 vgvni~~~~~~~~~~~dy~~~a~~l~~~aD~ieiNiscPnt~Glr~lq~~~~l~~il~~v~~~~~~~~~~~~~~~g~~~~ 261 (443)
T 1tv5_A 182 VGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYN 261 (443)
T ss_dssp EEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHHHC------------
T ss_pred EEEEecCcccchHHHHHHHHHHHHHhcCCCEEEEeccCCCCcccccccCHHHHHHHHHHHHHHHhhhcccCccccccCHH
Confidence 345666665556779999999999998999999999999999999999999999999999987532210
Q ss_pred --------------------------------CCCCC-EEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchh
Q psy5880 177 --------------------------------KPLPP-ILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYE 223 (328)
Q Consensus 177 --------------------------------~~~~P-v~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~ 223 (328)
..++| |+||++++++.+++.++|+.+ +++|+|+|+++||+..+.+
T Consensus 262 ~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~vKispd~~~ed~~~iA~~~--~~aGaDgI~v~ntt~~~~d 339 (443)
T 1tv5_A 262 EDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVL--LETNIDGMIISNTTTQIND 339 (443)
T ss_dssp --------------------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHH--HHTTCSEEEECCCBSCCCC
T ss_pred HHHHHHHHhhcccccchhhhhhhhhcchhcccCCCCCeEEEEeCCCCCHHHHHHHHHHH--HHcCCCEEEEECCCccccc
Confidence 13689 999999999988899999999 9999999999999864332
Q ss_pred hhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 224 YLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 224 ~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
. .....+.||+||++++|.++++++++++.+++++|||++|||+|++|+.+++++|||+||+||+++++||+++++++
T Consensus 340 ~--~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aGAd~Vqigrall~~gP~l~~~i~ 417 (443)
T 1tv5_A 340 I--KSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIK 417 (443)
T ss_dssp C--GGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHH
T ss_pred c--cccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcChHHHHHHH
Confidence 1 12234578999999999999999999999955699999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHhCCCCHHHHhccccc
Q psy5880 304 SELEELLQKEGYNSVSQAVGAAHK 327 (328)
Q Consensus 304 ~~l~~~m~~~g~~si~e~~G~~~~ 327 (328)
+++..||.++||+|++|++|.+++
T Consensus 418 ~~l~~~l~~~G~~si~e~~G~~~~ 441 (443)
T 1tv5_A 418 RELNHLLYQRGYYNLKEAIGRKHS 441 (443)
T ss_dssp HHHHHHHHHHTCSSSGGGTTTTC-
T ss_pred HHHHHHHHHhCCCCHHHHhhhhcc
Confidence 999999999999999999998875
No 4
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=100.00 E-value=5.3e-37 Score=288.56 Aligned_cols=240 Identities=23% Similarity=0.325 Sum_probs=186.6
Q ss_pred EEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhc---c-
Q psy5880 59 FVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFG---D- 134 (328)
Q Consensus 59 v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~---~- 134 (328)
+....+.-|..|+.+.+ ++.+++.+.+... ....|+.+.+.- . ..++|+++++++. .
T Consensus 94 ~~~~~~~iN~~G~~n~G----~~~~~~~l~~~~~----~~~~pvivsI~G-----~------~~~d~~~~a~~l~~~~~~ 154 (354)
T 4ef8_A 94 QALPLGSINSMGLPNNG----FDFYLAYAAEQHD----YGKKPLFLSMSG-----L------SMRENVEMCKRLAAVATE 154 (354)
T ss_dssp EEETTEEEECCCCCBCC----HHHHHHHHHHTCC----TTTCCEEEEECC-----S------SHHHHHHHHHHHHHHHHH
T ss_pred EecchhhhccCCCCCcC----HHHHHHHHHHHhh----cCCCcEEEEecc-----C------CHHHHHHHHHHHhhhhhc
Confidence 33333444666777665 3334444433211 113566555421 1 2455566665554 2
Q ss_pred cccEEEEccCCCCCcchhhh-hhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCC-ccEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKL-QAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCK-VDGL 212 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~-~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G-~d~i 212 (328)
++|+||||+||||+++.+.+ ++++.+.+++++|+++ .++||+||++++++.+++.++++.+ .++| +|+|
T Consensus 155 g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~-------~~~PV~vKi~p~~d~~~~~~~a~~~--~~~Gg~d~I 225 (354)
T 4ef8_A 155 KGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEV-------YPHSFGVKMPPYFDFAHFDAAAEIL--NEFPKVQFI 225 (354)
T ss_dssp HCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHH-------CCSCEEEEECCCCSHHHHHHHHHHH--HTCTTEEEE
T ss_pred CCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHh-------hCCCeEEEecCCCCHHHHHHHHHHH--HhCCCccEE
Confidence 58999999999999876554 5789999999999987 6899999999999888888899988 8998 9999
Q ss_pred EEecCCc-cch---hhhcccc--ccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeee
Q psy5880 213 IVSNTTV-DRY---EYLDARY--KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286 (328)
Q Consensus 213 ~~~n~~~-~~~---~~~~~~~--~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~ 286 (328)
+++||+. ++. ....+.. ....||+||++++|.++++++++++.. .++|||++|||+|++|+.+++++|||+||
T Consensus 226 ~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~-~~ipII~~GGI~s~~da~~~l~aGAd~V~ 304 (354)
T 4ef8_A 226 TCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRC-PGKLIFGCGGVYTGEDAFLHVLAGASMVQ 304 (354)
T ss_dssp EECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHC-TTSEEEEESCCCSHHHHHHHHHHTEEEEE
T ss_pred EEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhC-CCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 9999872 111 1222211 346789999999999999999999985 25999999999999999999999999999
Q ss_pred ehhHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHHhccccc
Q psy5880 287 IYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327 (328)
Q Consensus 287 vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~G~~~~ 327 (328)
+||+++++||++++++.++++.||+++||+|++|++|+++.
T Consensus 305 vgra~l~~GP~~~~~i~~~l~~~m~~~G~~si~el~G~~~~ 345 (354)
T 4ef8_A 305 VGTALQEEGPSIFERLTSELLGVMAKKRYQTLDEFRGKVRT 345 (354)
T ss_dssp ECHHHHHHCTTHHHHHHHHHHHHHHHHTCCSGGGTTTCCBC
T ss_pred EhHHHHHhCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999998764
No 5
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=100.00 E-value=2.6e-36 Score=283.16 Aligned_cols=240 Identities=23% Similarity=0.335 Sum_probs=177.8
Q ss_pred ceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcc--
Q psy5880 57 HYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGD-- 134 (328)
Q Consensus 57 ~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-- 134 (328)
.+++...+.-|..|+.+.+-.. +++.+.+...+ ....|+.+.+.- ...++|+++++++.+
T Consensus 93 R~~~~~~~~iN~~G~~n~G~~~----~~~~l~~~~~~---~~~~pvivsI~g-----------~~~~d~~~~a~~l~~~g 154 (345)
T 3oix_A 93 RYADTKLGSINSMGLPNLGINY----YLDYVTELQKQ---PDSKNHFLSLVG-----------MSPEETHTILXMVEASK 154 (345)
T ss_dssp CEEECSSEEEECCCCCBSCHHH----HHHHHHHHHHS---TTCCCCEEEECC-----------SSHHHHHHHHHHHHHSS
T ss_pred cEEecccchhccCCCCChhHHH----HHHHHHHHhhc---cCCCCEEEEecC-----------CCHHHHHHHHHHHhccC
Confidence 3444444455777777766433 33333332110 123566655431 135777777777753
Q ss_pred cccEEEEccCCCCCcchhhh-hhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKL-QAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLI 213 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~-~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~ 213 (328)
+.|+||||+||||+++.+.+ ++++.+.+++++|+++ .++||+|||+|+++.+ ++++.+ +++|+++|+
T Consensus 155 ~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~-------~~~PV~vKi~p~~~~~---~~a~~~--~~aga~~i~ 222 (345)
T 3oix_A 155 YQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTY-------FTKPLGIKLPPYFDIV---HFDQAA--AIFNXYPLT 222 (345)
T ss_dssp CCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTT-------CCSCEEEEECCCCCHH---HHHHHH--HHHTTSCCS
T ss_pred CCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHH-------hCCCeEEEECCCCCHH---HHHHHH--HHhCCCceE
Confidence 34599999999999876544 6789999999999876 6899999999997654 455555 555555555
Q ss_pred EecCCcc---c--hhhhcccc--ccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeee
Q psy5880 214 VSNTTVD---R--YEYLDARY--KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286 (328)
Q Consensus 214 ~~n~~~~---~--~~~~~~~~--~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~ 286 (328)
++|++.+ . .+...+.. ....||+||++++|.++++++++++.+++++|||++|||+|++|+.+++++|||+||
T Consensus 223 ~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~ 302 (345)
T 3oix_A 223 FVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQ 302 (345)
T ss_dssp EEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred EEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEE
Confidence 5444421 0 11122222 345789999999999999999999999656999999999999999999999999999
Q ss_pred ehhHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHHhcccc
Q psy5880 287 IYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAH 326 (328)
Q Consensus 287 vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~G~~~ 326 (328)
+||++++.||++++++.++++.||+++||+|++|++|.++
T Consensus 303 igra~~~~gP~~~~~i~~~L~~~l~~~G~~si~e~~G~~~ 342 (345)
T 3oix_A 303 IGTALHQEGPQIFKRITKELXAIMTEKGYETLEDFRGKLN 342 (345)
T ss_dssp ESHHHHHHCTHHHHHHHHHHHHHHHHHTCCSGGGTTTCCB
T ss_pred EChHHHhcChHHHHHHHHHHHHHHHHcCCCCHHHHHhHHh
Confidence 9999777899999999999999999999999999999875
No 6
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=100.00 E-value=1.3e-33 Score=262.92 Aligned_cols=198 Identities=25% Similarity=0.394 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHhcc-ccc-EEEEccCCCCCcchhhh-hhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHH
Q psy5880 121 VVLDSVKGILKFGD-VAH-YFVVNVSSPNTANLRKL-QAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKD 197 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d-~ieiN~scPn~~g~~~~-~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ 197 (328)
..++|.++++++.+ ++| +||+|++||++++.+.+ .+++.+.+++++|++. .++||++|++++++.+++.+
T Consensus 104 ~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~-------~~~Pv~vKi~~~~~~~~~~~ 176 (311)
T 1jub_A 104 SAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTF-------FTKPLGVKLPPYFDLVHFDI 176 (311)
T ss_dssp SHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTT-------CCSCEEEEECCCCSHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHh-------cCCCEEEEECCCCCHHHHHH
Confidence 35667777766665 589 99999999998654333 3677888999888875 57999999999998888889
Q ss_pred HHHHhccccCCccEEEEecCCcc-c-hh--hhcccc--ccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTVD-R-YE--YLDARY--KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG 271 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~~-~-~~--~~~~~~--~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~ 271 (328)
+++.+ +++|+|+|+++|++.. + .+ ...+.. ....||+||+++.|.++++++++++.+++++|||++|||+|+
T Consensus 177 ~a~~~--~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~ 254 (311)
T 1jub_A 177 MAEIL--NQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETG 254 (311)
T ss_dssp HHHHH--TTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSH
T ss_pred HHHHH--HHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCCH
Confidence 99999 9999999999998621 1 01 011111 124578999988888999999999998545999999999999
Q ss_pred HHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHHhccccc
Q psy5880 272 KDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327 (328)
Q Consensus 272 ~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~G~~~~ 327 (328)
+|+.+++++|||+||+||+++++||++++++.++++.||+++||+|++|++|.++.
T Consensus 255 ~da~~~l~~GAd~V~vg~~~l~~~p~~~~~i~~~l~~~l~~~g~~si~e~~g~~~~ 310 (311)
T 1jub_A 255 QDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGKLKS 310 (311)
T ss_dssp HHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHHHHTCCSGGGTTTCCBC
T ss_pred HHHHHHHHcCCCEEEEchHHHhcCcHHHHHHHHHHHHHHHHcCCCCHHHHhChhhc
Confidence 99999999999999999999976899999999999999999999999999998753
No 7
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=100.00 E-value=1e-33 Score=268.11 Aligned_cols=283 Identities=20% Similarity=0.279 Sum_probs=186.9
Q ss_pred ccCCcccccCCCCcCChhhHHHHHHHhHHHHHHHhhc-----------------CccceEEeccCCCCCcCccCCCchHH
Q psy5880 17 FRSGEWGCTPTHNMLSSFARMRAWVLQFWLLGILKFG-----------------DVAHYFVVNVSSPNTANLRKLQAKDQ 79 (328)
Q Consensus 17 ~~~~~~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l~-----------------~~~~~v~~n~sspN~~gl~~~~~~~~ 79 (328)
+...++|..+.++.....+-.+. - .++...+.... +...++.+....-|..|+.+.+....
T Consensus 37 L~v~~~Gl~f~NPvglAaG~~~~-~-~e~~~~l~~~G~G~v~~~tvt~~pq~GNp~PR~~~l~~~~iN~~G~~n~G~~~~ 114 (354)
T 3tjx_A 37 LQVNLLNNTFANPFMNAAGVMCT-T-TEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFY 114 (354)
T ss_dssp CCEEETTEEESSSEEECTTSSCS-S-HHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHHH
T ss_pred eeEEECCEEcCCCcEEccCCCCC-C-HHHHHHHHHcCCCEEEeCCcCcccccCCCCCeEEEcccccccccccCCHHHHHH
Confidence 55667999999987443221110 0 02322222211 01123333333446677777654333
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHh-cccccEEEEccCCCCCcchhhh-hhh
Q psy5880 80 LKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKF-GDVAHYFVVNVSSPNTANLRKL-QAK 157 (328)
Q Consensus 80 L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~-~~~~d~ieiN~scPn~~g~~~~-~~~ 157 (328)
++.+..... ....|+.+.+. .+ +.+.+.++++.+.++ .+++|+||+|+||||+++.+.+ .++
T Consensus 115 ----~~~~~~~~~----~~~~pvivsi~------g~--~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~~g~~~l~~~~ 178 (354)
T 3tjx_A 115 ----LAYAAEQHD----YGKKPLFLSMS------GL--SMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDF 178 (354)
T ss_dssp ----HHHHHHTCC----TTTCCEEEEEC------CS--SHHHHHHHHHHHHHHHHHHCCEEEEECC---------CTTSH
T ss_pred ----HHHHHHhhc----cCCceEEEEEe------cC--ChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCCcchhhhccCH
Confidence 333332221 12345554332 21 223334444433333 2368999999999999877665 467
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhcccc-CCccEEEEecCCcc-c-hh--hhcc--ccc
Q psy5880 158 DQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSK-CKVDGLIVSNTTVD-R-YE--YLDA--RYK 230 (328)
Q Consensus 158 ~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~-~G~d~i~~~n~~~~-~-~~--~~~~--~~~ 230 (328)
+.+.++++++++. .+.|+++|++|+++...+...+..+ .+ .++++++..|+... . .+ ...+ ...
T Consensus 179 ~~~~~i~~~v~~~-------~~~pv~vK~~p~~~~~~~~~~~~~~--~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~ 249 (354)
T 3tjx_A 179 DAMRQCLTAVSEV-------YPHSFGVKMPPYFDFAAFDAAAEIL--NEFPKVQFITCINSIGNGLVIDAETESVVIKPK 249 (354)
T ss_dssp HHHHHHHHHHHHH-------CCSCEEEEECCCCSHHHHHHHHHHH--HTCTTEEEEEECCCEEEEECEETTTTEESCSGG
T ss_pred HHHHHHHHHHHHH-------hhcccccccCCCCCchhHHHHHHHH--HhhcccchhheecccccccccccccccccccCc
Confidence 8899999999887 6889999999999876666666666 44 45666666665421 1 11 1111 123
Q ss_pred cccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHH
Q psy5880 231 EETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELL 310 (328)
Q Consensus 231 ~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m 310 (328)
.+.||+||+++++.++++++++++.++ ++|||++|||.|++||.++|++|||+|||||+++|+||+++++|+++|++||
T Consensus 250 ~~~GGlSG~~~~~~a~~~v~~~~~~~~-~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~~I~~~L~~~L 328 (354)
T 3tjx_A 250 QGFGGLGGRYVLPTALANINAFYRRCP-GKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVM 328 (354)
T ss_dssp GGEEEEEGGGGHHHHHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHH
T ss_pred ccccccCchhhHHHHHHHHHHHHHhcC-CCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHHHHHHHHHHHH
Confidence 456899999999999999999999875 5999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHhccccc
Q psy5880 311 QKEGYNSVSQAVGAAHK 327 (328)
Q Consensus 311 ~~~g~~si~e~~G~~~~ 327 (328)
+++||+||+|++|++++
T Consensus 329 ~~~G~~si~e~~G~~~~ 345 (354)
T 3tjx_A 329 AKKRYQTLDEFRGKVRT 345 (354)
T ss_dssp HHHTCCSGGGTTTCCBC
T ss_pred HHcCCCCHHHHhChhhc
Confidence 99999999999998864
No 8
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=100.00 E-value=2.1e-32 Score=255.08 Aligned_cols=196 Identities=25% Similarity=0.387 Sum_probs=163.0
Q ss_pred HHHHHHHHHHhcc-ccc---EEEEccCCCCCcchhh-hhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHH
Q psy5880 122 VLDSVKGILKFGD-VAH---YFVVNVSSPNTANLRK-LQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKK 196 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d---~ieiN~scPn~~g~~~-~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~ 196 (328)
.++|.++++++.+ ++| +||+|++||++++.+. ..+++.+.+++++|++. .++||++|++++++.+++.
T Consensus 105 ~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~-------~~~Pv~vK~~~~~~~~~~~ 177 (314)
T 2e6f_A 105 VEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLA-------YGLPFGVKMPPYFDIAHFD 177 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHH-------HCSCEEEEECCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHh-------cCCCEEEEECCCCCHHHHH
Confidence 4566666666554 489 9999999999864333 34678889999999987 4789999999999888899
Q ss_pred HHHHHhccccCC-ccEEEEecCCcc-c-hh--hhcccc--ccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 197 DIADVVLDSKCK-VDGLIVSNTTVD-R-YE--YLDARY--KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 197 ~~a~~l~~~~~G-~d~i~~~n~~~~-~-~~--~~~~~~--~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++++.+ .++| +|+|+++|++.. . .+ ...+.. ....||++|+++.|.++++++++++.+ +++|||++|||+
T Consensus 178 ~~a~~~--~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~-~~ipvi~~GGI~ 254 (314)
T 2e6f_A 178 TAAAVL--NEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRC-PDKLVFGCGGVY 254 (314)
T ss_dssp HHHHHH--HTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHC-TTSEEEEESSCC
T ss_pred HHHHHH--HhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhc-CCCCEEEECCCC
Confidence 999999 9999 999999998731 0 01 111111 134578899988899999999999998 349999999999
Q ss_pred CHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHHhccccc
Q psy5880 270 SGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327 (328)
Q Consensus 270 s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~G~~~~ 327 (328)
|++|+.+++++|||+||+||+++++||++++++.++++.||+++||+|++|++|.++.
T Consensus 255 ~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~l~~~~~~~g~~~i~~~~g~~~~ 312 (314)
T 2e6f_A 255 SGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKGYRTLEEFRGRVKT 312 (314)
T ss_dssp SHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHHHHHTCCSSTTTTTCCBC
T ss_pred CHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHHHHHHHHHHcCCCCHHHHhchHhh
Confidence 9999999999999999999999976899999999999999999999999999998763
No 9
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=99.97 E-value=4.8e-31 Score=248.13 Aligned_cols=215 Identities=40% Similarity=0.576 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHH
Q psy5880 80 LKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQ 159 (328)
Q Consensus 80 L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~ 159 (328)
++++++.+++.. ...|+.+.+...- .....+.+++|+++++++.+++|+||+|++||++++.+..+++++
T Consensus 120 ~~~~~~~~~~~~------~~~~~~v~i~~~~----~~~i~~~~~~~~~aa~~~~~g~d~iein~~sP~~~g~~~~~~~~~ 189 (336)
T 1f76_A 120 VDNLVENVKKAH------YDGVLGINIGKNK----DTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEA 189 (336)
T ss_dssp HHHHHHHHHHCC------CCSEEEEEECCCT----TSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHH
T ss_pred HHHHHHHHHhcc------cCCcEEEEecCCC----CCcccccHHHHHHHHHHHhccCCEEEEEccCCCCCCcccccCHHH
Confidence 466666666432 1236555443210 001235689999999988778999999999999877777788999
Q ss_pred HHHHHHHHHHHHHhhc--CCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCC
Q psy5880 160 LKHLLKTVVETRNQLA--VKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLS 237 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~--~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~s 237 (328)
+.+++++|++.+..+. ...++||+||++++++.+++.++++.+ +++|+|+|+++|++.++.....+......||++
T Consensus 190 ~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l--~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~ 267 (336)
T 1f76_A 190 LDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSL--VRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLS 267 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHH--HHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEE
T ss_pred HHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHH--HHcCCcEEEEeCCcccccccccccccccCCCcC
Confidence 9999999999853210 003789999999999988899999999 999999999999876543222222334567889
Q ss_pred CCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 238 GEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 238 g~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
|+++++..+++++++++.+++++|||++|||+|++|+.+++++|||+||+||+++++||+|+++++++|
T Consensus 268 g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~~~P~~~~~i~~~l 336 (336)
T 1f76_A 268 GRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI 336 (336)
T ss_dssp EGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHhcCcHHHHHHHhhC
Confidence 988888899999999999855699999999999999999999999999999999987899999998764
No 10
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=99.97 E-value=3e-29 Score=235.72 Aligned_cols=244 Identities=18% Similarity=0.128 Sum_probs=190.4
Q ss_pred hhHHHHHHHhHHHHHHHh----hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-C--C---
Q psy5880 34 FARMRAWVLQFWLLGILK----FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-K--P--- 98 (328)
Q Consensus 34 ~~~v~~~~l~~y~~~~~~----l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~--~--- 98 (328)
++.++++++++|.++++. |+.++.++..+ ..+|+++|++++.+.++|++++++||+.++++. | + .
T Consensus 34 ~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~~~~~i~~d~~i~~~~~~~~~vh~~G~~i~~QL~H~Gr~~~~~ 113 (340)
T 3gr7_A 34 DGAVRTWHKIHYPARAVGQVGLIIVEATGVTPQGRISERDLGIWSDDHIAGLRELVGLVKEHGAAIGIQLAHAGRKSQVP 113 (340)
T ss_dssp SSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSEECSSTTHHHHHHHHHHHHHHTTCEEEEEEECCGGGCCSS
T ss_pred CCCCCHHHHHHHHHHhcCCceEEEEcceEecccccCCCCCcccCCHHHHHHHHHHHHHHHhCCCeEEEEeccCCCccCCC
Confidence 788999999999999983 45667777766 678999999999999999999999999998832 2 1 0
Q ss_pred CC---cchh------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccC---------CCCCcchhhhhh---
Q psy5880 99 LP---PILV------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVS---------SPNTANLRKLQA--- 156 (328)
Q Consensus 99 ~~---Pv~v------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~s---------cPn~~g~~~~~~--- 156 (328)
.. |.-+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||.+ ||++ +.|++++
T Consensus 114 ~~~~~pS~~~~~~~~~~p~~mt~~e---I~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~-N~R~D~yGGs 189 (340)
T 3gr7_A 114 GEIIAPSAVPFDDSSPTPKEMTKAD---IEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLS-NRRQDEYGGS 189 (340)
T ss_dssp SCCEESSSCCSSTTSCCCEECCHHH---HHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTT-CCCCSTTSSS
T ss_pred CCccCCCCccccCCCCCCccCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCcc-CcCCCcccCC
Confidence 11 1111 1233444333 25678999999999987 8999999977 5987 3444332
Q ss_pred ----hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC------CChhhHHHHHHHhccccCCccEEEEecCCccchhhhc
Q psy5880 157 ----KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD------LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLD 226 (328)
Q Consensus 157 ----~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~------~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~ 226 (328)
.+++.|++++|+++ .++||+|||+++ ++.++..++++.+ +++|+|+|+++++.....
T Consensus 190 lenR~r~~~eiv~avr~~-------v~~pv~vRls~~~~~~~g~~~~~~~~la~~L--~~~Gvd~i~vs~g~~~~~---- 256 (340)
T 3gr7_A 190 PENRYRFLGEVIDAVREV-------WDGPLFVRISASDYHPDGLTAKDYVPYAKRM--KEQGVDLVDVSSGAIVPA---- 256 (340)
T ss_dssp HHHHHHHHHHHHHHHHHH-------CCSCEEEEEESCCCSTTSCCGGGHHHHHHHH--HHTTCCEEEEECCCSSCC----
T ss_pred HHHHHHHHHHHHHHHHHh-------cCCceEEEeccccccCCCCCHHHHHHHHHHH--HHcCCCEEEEecCCccCC----
Confidence 36899999999988 689999999985 4667899999999 999999999986432100
Q ss_pred cccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhhcCchHHHHHHHH
Q psy5880 227 ARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 227 ~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
....++ ...+++++++++.++ +|||++|||+|++++.++|+.| ||+|++||+++. +|+|++++.++
T Consensus 257 -------~~~~~~---~~~~~~~~~ik~~~~--iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~la-nPdl~~ki~~~ 323 (340)
T 3gr7_A 257 -------RMNVYP---GYQVPFAELIRREAD--IPTGAVGLITSGWQAEEILQNGRADLVFLGRELLR-NPYWPYAAARE 323 (340)
T ss_dssp -------CCCCCT---TTTHHHHHHHHHHTT--CCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHH-CTTHHHHHHHH
T ss_pred -------CCCCCc---cccHHHHHHHHHHcC--CcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHh-CchHHHHHHHH
Confidence 000111 124678899999987 9999999999999999999999 999999999986 69999999877
Q ss_pred HH
Q psy5880 306 LE 307 (328)
Q Consensus 306 l~ 307 (328)
+.
T Consensus 324 l~ 325 (340)
T 3gr7_A 324 LG 325 (340)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 11
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=99.97 E-value=2.1e-29 Score=234.11 Aligned_cols=230 Identities=26% Similarity=0.337 Sum_probs=174.1
Q ss_pred CCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhc--ccccEEEEccC
Q psy5880 67 NTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFG--DVAHYFVVNVS 144 (328)
Q Consensus 67 N~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~--~~~d~ieiN~s 144 (328)
|..|+.+.+..+.+++++..+++.. +..|+.+.+.. + ..++|.++++.+. .++|+||+|++
T Consensus 72 ~~~g~~~~~~~~~~~~~~~~~~~~~------~~~p~~v~l~~------~-----~~~~~~~~a~~~~~~~g~d~iei~~~ 134 (311)
T 1ep3_A 72 NAIGLQNPGLEVIMTEKLPWLNENF------PELPIIANVAG------S-----EEADYVAVCAKIGDAANVKAIELNIS 134 (311)
T ss_dssp ECCCCCBCCHHHHHHTHHHHHHHHC------TTSCEEEEECC------S-----SHHHHHHHHHHHTTSTTEEEEEEECC
T ss_pred cccCCCCcCHHHHHHHHHHHHHhcC------CCCcEEEEEcC------C-----CHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 4556665543333344555554311 12465554432 1 2566777777766 46999999999
Q ss_pred CCCCcc--hhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccch
Q psy5880 145 SPNTAN--LRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRY 222 (328)
Q Consensus 145 cPn~~g--~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~ 222 (328)
||+++. .....+++++.++++++++. .++||++|++++++ ++.++++.+ .++|+|+|+++|+..+..
T Consensus 135 ~p~~~~g~~~~g~~~~~~~eii~~v~~~-------~~~pv~vk~~~~~~--~~~~~a~~l--~~~G~d~i~v~~~~~g~~ 203 (311)
T 1ep3_A 135 CPNVKHGGQAFGTDPEVAAALVKACKAV-------SKVPLYVKLSPNVT--DIVPIAKAV--EAAGADGLTMINTLMGVR 203 (311)
T ss_dssp SEEGGGTTEEGGGCHHHHHHHHHHHHHH-------CSSCEEEEECSCSS--CSHHHHHHH--HHTTCSEEEECCCEEECC
T ss_pred CCCCCCchhhhcCCHHHHHHHHHHHHHh-------cCCCEEEEECCChH--HHHHHHHHH--HHcCCCEEEEeCCCcccc
Confidence 999731 22345678889999999886 57999999998765 366888999 899999999988654321
Q ss_pred -h--hhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHH
Q psy5880 223 -E--YLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLV 299 (328)
Q Consensus 223 -~--~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~ 299 (328)
. ...+......+|++|++.++..+++++++++.++ +|||++|||+|++|+.+++++|||+|++||+++. +|+++
T Consensus 204 i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~--ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~-~p~~~ 280 (311)
T 1ep3_A 204 FDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVD--IPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA-DPFVC 280 (311)
T ss_dssp BCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCS--SCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHH-CTTHH
T ss_pred cCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcC--CCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHc-CcHHH
Confidence 0 1111112234678888888888899999999886 9999999999999999999999999999999986 79999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHhccccc
Q psy5880 300 TRIKSELEELLQKEGYNSVSQAVGAAHK 327 (328)
Q Consensus 300 ~~i~~~l~~~m~~~g~~si~e~~G~~~~ 327 (328)
+++.++++.||.++|++|++|++|.+++
T Consensus 281 ~~i~~~l~~~~~~~g~~~~~~~~g~~~~ 308 (311)
T 1ep3_A 281 PKIIDKLPELMDQYRIESLESLIQEVKE 308 (311)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHhChhcc
Confidence 9999999999999999999999998775
No 12
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=99.96 E-value=1.5e-28 Score=232.09 Aligned_cols=250 Identities=17% Similarity=0.104 Sum_probs=191.7
Q ss_pred CChhhHHHHHHHhHHHHHHHh----hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-C--C
Q psy5880 31 LSSFARMRAWVLQFWLLGILK----FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-K--P 98 (328)
Q Consensus 31 ~~~~~~v~~~~l~~y~~~~~~----l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~--~ 98 (328)
+.+++.++++++++|.++++. |+.++.++..+ ..+|+++|++++.+.+.|++++++||+.++++. | + .
T Consensus 29 ~~~~g~~~~~~~~~y~~rA~gg~Glii~e~~~v~~~g~~~~~~~~i~~d~~i~~~~~~~~~vh~~G~~i~~Ql~H~Gr~~ 108 (349)
T 3hgj_A 29 ATLEGEVTDWHLLHYPTRALGGVGLILVEATAVEPLGRISPYDLGIWSEDHLPGLKELARRIREAGAVPGIQLAHAGRKA 108 (349)
T ss_dssp SCTTCCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSGGGHHHHHHHHHHHHHTTCEEEEEEECCGGGC
T ss_pred cCCCCCCCHHHHHHHHHHhcCCceEEEecceeecccccCCCCcCccCcHHHHHHHHHHHHHHHhCCCeEEEEeccCCccc
Confidence 444788999999999999983 55667777766 678999999999999999999999999998832 2 1 1
Q ss_pred C-------------C---cchhc------ccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC---------C
Q psy5880 99 L-------------P---PILVK------IAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS---------P 146 (328)
Q Consensus 99 ~-------------~---Pv~vk------i~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc---------P 146 (328)
. . |.-+. .|..|+..+ ..+.+++|+++|+++.+ ++|+||||.+| |
T Consensus 109 ~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~e---I~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp 185 (349)
T 3hgj_A 109 GTARPWEGGKPLGWRVVGPSPIPFDEGYPVPEPLDEAG---MERILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSP 185 (349)
T ss_dssp CBCCGGGTCCBCCCCCEESSSCCSSTTCCCCEECCHHH---HHHHHHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCT
T ss_pred cccccccccccCCCcccCCCcccccCCCCCCccCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCC
Confidence 0 0 11111 222343322 25678999999999987 89999999998 8
Q ss_pred CCcchhhhhh-------hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC------CCChhhHHHHHHHhccccCCccEEE
Q psy5880 147 NTANLRKLQA-------KDQLKHLLKTVVETRNQLAVKPLPPILVKIAP------DLSLDEKKDIADVVLDSKCKVDGLI 213 (328)
Q Consensus 147 n~~g~~~~~~-------~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~------~~~~~~~~~~a~~l~~~~~G~d~i~ 213 (328)
++ +.|++++ .+++.|++++||+++ + .++||+||+++ +++.++..++++.| .++|+|+|+
T Consensus 186 ~~-N~R~D~yGGslenR~r~~~eiv~aVR~av---G--~d~pV~vRls~~~~~~~g~~~~~~~~la~~L--~~~Gvd~i~ 257 (349)
T 3hgj_A 186 LS-NQRTDAYGGSLENRMRFPLQVAQAVREVV---P--RELPLFVRVSATDWGEGGWSLEDTLAFARRL--KELGVDLLD 257 (349)
T ss_dssp TT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHS---C--TTSCEEEEEESCCCSTTSCCHHHHHHHHHHH--HHTTCCEEE
T ss_pred cc-cccCCCCCcCHHHHHHHHHHHHHHHHHHh---c--CCceEEEEeccccccCCCCCHHHHHHHHHHH--HHcCCCEEE
Confidence 87 4444333 368899999999883 3 47999999998 36778899999999 999999999
Q ss_pred EecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHh
Q psy5880 214 VSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFV 292 (328)
Q Consensus 214 ~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l 292 (328)
++++... +.. ....++ ...+++++++++.++ +|||++|||+|++++.++++.| ||+|++||+++
T Consensus 258 vs~g~~~-~~~---------~~~~~~---~~~~~~~~~ir~~~~--iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~l 322 (349)
T 3hgj_A 258 CSSGGVV-LRV---------RIPLAP---GFQVPFADAVRKRVG--LRTGAVGLITTPEQAETLLQAGSADLVLLGRVLL 322 (349)
T ss_dssp EECCCSC-SSS---------CCCCCT---TTTHHHHHHHHHHHC--CEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHH
T ss_pred EecCCcC-ccc---------ccCCCc---cccHHHHHHHHHHcC--ceEEEECCCCCHHHHHHHHHCCCceEEEecHHHH
Confidence 9963221 000 000111 134678899999887 9999999999999999999999 99999999998
Q ss_pred hcCchHHHHHHHHHH
Q psy5880 293 YHGPPLVTRIKSELE 307 (328)
Q Consensus 293 ~~gp~~~~~i~~~l~ 307 (328)
. +|+|+.++.+++.
T Consensus 323 a-nPdl~~k~~~~l~ 336 (349)
T 3hgj_A 323 R-DPYFPLRAAKALG 336 (349)
T ss_dssp H-CTTHHHHHHHHTT
T ss_pred h-CchHHHHHHHHCC
Confidence 5 6999999987753
No 13
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=99.96 E-value=9.3e-28 Score=225.75 Aligned_cols=245 Identities=12% Similarity=0.134 Sum_probs=186.1
Q ss_pred hhhHHHHHHHhHHHHHHHh----hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-CC----
Q psy5880 33 SFARMRAWVLQFWLLGILK----FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-KP---- 98 (328)
Q Consensus 33 ~~~~v~~~~l~~y~~~~~~----l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~---- 98 (328)
+++.++++++++|.++++. ++.+..++..+ ..+|+++|++++.+.+.|+++++++|+.+.++. | +.
T Consensus 33 ~~g~~~~~~~~~y~~rA~gG~gliite~~~v~~~g~~~~~~~~i~~d~~~~~~~~~~~~vh~~g~~i~~QL~h~Gr~~~~ 112 (338)
T 1z41_A 33 KDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKLTEQVKEQGSKIGIQLAHAGRKAEL 112 (338)
T ss_dssp SSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHHHHHHHHHTTCEEEEEEECCGGGCCC
T ss_pred CCCCCCHHHHHHHHHHHcCCCCEEEeCCeeccccccCCCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCcccCC
Confidence 4667889999999999972 34555555544 678999999999999999999999999987732 2 10
Q ss_pred -CC---cchh------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC---------CCCcchhhhh---
Q psy5880 99 -LP---PILV------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS---------PNTANLRKLQ--- 155 (328)
Q Consensus 99 -~~---Pv~v------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc---------Pn~~g~~~~~--- 155 (328)
.. |..+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||..| |++ +.|+++
T Consensus 113 ~~~~~~pS~~~~~~~~~~p~~mt~~e---I~~~i~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~-n~R~d~yGG 188 (338)
T 1z41_A 113 EGDIFAPSAIAFDEQSATPVEMSAEK---VKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLS-NHRTDEYGG 188 (338)
T ss_dssp SSCCEESSSCCSSTTSCCCEECCHHH---HHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTT-CCCCSTTSS
T ss_pred CCCCcCCCCCCCCCCCCCCccCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCc-CCcCcccCc
Confidence 01 1111 1223343322 24568899999988876 89999999876 887 344332
Q ss_pred ----hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC------CCChhhHHHHHHHhccccCCccEEEEecCCccchhhh
Q psy5880 156 ----AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP------DLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYL 225 (328)
Q Consensus 156 ----~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~------~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~ 225 (328)
..+++.+++++|+++ .++||+||+++ +++.++..++++.+ +++|+|+|++++++....
T Consensus 189 slenr~r~~~eiv~avr~~-------v~~pv~vris~~~~~~~g~~~~~~~~~a~~l--~~~Gvd~i~v~~~~~~~~--- 256 (338)
T 1z41_A 189 SPENRYRFLREIIDEVKQV-------WDGPLFVRVSASDYTDKGLDIADHIGFAKWM--KEQGVDLIDCSSGALVHA--- 256 (338)
T ss_dssp SHHHHHHHHHHHHHHHHHH-------CCSCEEEEEECCCCSTTSCCHHHHHHHHHHH--HHTTCCEEEEECCCSSCC---
T ss_pred chhhhHHHHHHHHHHHHHH-------cCCcEEEEecCcccCCCCCCHHHHHHHHHHH--HHcCCCEEEEecCccccC---
Confidence 247889999999988 57999999998 46777889999999 999999999998653200
Q ss_pred ccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhhcCchHHHHHHH
Q psy5880 226 DARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 226 ~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i~~ 304 (328)
.-..++ ...+++++++++.++ +|||++|||+|++++.++++.| ||+|++||+++. +|+|++++.+
T Consensus 257 --------~~~~~~---~~~~~~~~~ir~~~~--iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~-nPdl~~ki~~ 322 (338)
T 1z41_A 257 --------DINVFP---GYQVSFAEKIREQAD--MATGAVGMITDGSMAEEILQNGRADLIFIGRELLR-DPFFARTAAK 322 (338)
T ss_dssp --------CCCCCT---TTTHHHHHHHHHHHC--CEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHH-CTTHHHHHHH
T ss_pred --------CCCCCc---cchHHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHh-CchHHHHHHc
Confidence 000111 124678899999987 9999999999999999999999 999999999986 5999999987
Q ss_pred HHH
Q psy5880 305 ELE 307 (328)
Q Consensus 305 ~l~ 307 (328)
++.
T Consensus 323 ~~~ 325 (338)
T 1z41_A 323 QLN 325 (338)
T ss_dssp HTT
T ss_pred CCC
Confidence 764
No 14
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=99.96 E-value=9.4e-28 Score=225.35 Aligned_cols=247 Identities=15% Similarity=0.112 Sum_probs=188.8
Q ss_pred CCcCChhhHHHHHHHhHHHHHHHh----hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-C
Q psy5880 28 HNMLSSFARMRAWVLQFWLLGILK----FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-K 97 (328)
Q Consensus 28 ~~~~~~~~~v~~~~l~~y~~~~~~----l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~ 97 (328)
.+.+.+++.++++.+++|.++++. |+.++.++..+ ..+|+++|++++.+.++|++++++||+.++++. | +
T Consensus 26 ~~~~~~~g~~t~~~~~yy~~rA~gG~Gliite~~~V~~~g~~~~~~~gi~~d~~i~~~~~~~~~vh~~G~~i~~QL~H~G 105 (343)
T 3kru_A 26 MYSASTDGMPNDWHIVHYATRAIGGVGLIMQEATAVESRGRITDHDLGIWNDEQVKELKKIVDICKANGAVMGIQLAHAG 105 (343)
T ss_dssp CCCSCTTCCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSHHHHHHHHHHHHHHHHTTCEEEEEEECCG
T ss_pred heecccCCCCCceeeeeeehhhccceeeeeehhhhhhhcCccccccccccCHHHHHHHHHHHHHHhcCCceEeeehhhcc
Confidence 334445788999999999999983 45667777766 678999999999999999999999999998832 2 1
Q ss_pred --C----CCc---chh------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEc---------cCCCCCcchh
Q psy5880 98 --P----LPP---ILV------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVN---------VSSPNTANLR 152 (328)
Q Consensus 98 --~----~~P---v~v------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN---------~scPn~~g~~ 152 (328)
. ..| .-+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+|||| |.||++ +.|
T Consensus 106 r~~~~~g~~~~apS~i~~~~~~~~p~~mt~~e---I~~ii~~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~-N~R 181 (343)
T 3kru_A 106 RKCNISYEDVVGPSPIKAGDRYKLPRELSVEE---IKSIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLS-NKR 181 (343)
T ss_dssp GGCCCTTSCCEESSSCCSSTTSCCCEECCHHH---HHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTT-CCC
T ss_pred CccCcchhhccCCCcCCCCccccCchhcCHHH---HHHHHHHHHHHHhhccccCCceEEEecccchhHHHhhcccc-ccc
Confidence 0 111 111 1233444333 25678999999999987 89999999 899997 344
Q ss_pred hhhh-------hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC------CChhhHHHHHHHhccccCCccEEEEecCCc
Q psy5880 153 KLQA-------KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD------LSLDEKKDIADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 153 ~~~~-------~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~------~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++++ .+++.|++++|++++ + .++||+|||++. ++.++..++++.| +++ +|+|+++....
T Consensus 182 ~D~yGGslenR~rf~~eiv~aVr~av---g--~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l--~~~-vd~i~vs~g~~ 253 (343)
T 3kru_A 182 KDEYGNSIENRARFLIEVIDEVRKNW---P--ENKPIFVRVSADDYMEGGINIDMMVEYINMI--KDK-VDLIDVSSGGL 253 (343)
T ss_dssp CSTTSSSHHHHTHHHHHHHHHHHHTS---C--TTSCEEEEEECCCSSTTSCCHHHHHHHHHHH--TTT-CSEEEEECCCS
T ss_pred chhhccchHhHHHHHHHHHHHHHhcC---C--ccCCeEEEeechhhhccCccHHHHHHHHHHh--hcc-ccEEeccCCce
Confidence 4333 378999999999873 2 478999999984 4567899999999 899 99999964321
Q ss_pred cchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhhcCchH
Q psy5880 220 DRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPL 298 (328)
Q Consensus 220 ~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~ 298 (328)
... .. ..++ ...+++++++++.++ +|||++|||++++++.++++.| ||+|++||+++. +|+|
T Consensus 254 ~~~-----~~------~~~~---~~~~~~~~~ir~~~~--iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~la-nPdl 316 (343)
T 3kru_A 254 LNV-----DI------NLYP---GYQVKYAETIKKRCN--IKTSAVGLITTQELAEEILSNERADLVALGRELLR-NPYW 316 (343)
T ss_dssp SCC-----CC------CCCT---TTTHHHHHHHHHHHT--CEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHH-CTTH
T ss_pred Eee-----ee------cccC---ceeehHHHHHHHhcC--cccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhc-CCeE
Confidence 100 00 0011 124678899999987 9999999999999999999998 999999999986 5999
Q ss_pred HHHHH
Q psy5880 299 VTRIK 303 (328)
Q Consensus 299 ~~~i~ 303 (328)
+.++.
T Consensus 317 ~~k~~ 321 (343)
T 3kru_A 317 VLHTY 321 (343)
T ss_dssp HHHTC
T ss_pred EEEEe
Confidence 99986
No 15
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=99.95 E-value=4.8e-28 Score=229.62 Aligned_cols=248 Identities=17% Similarity=0.095 Sum_probs=188.9
Q ss_pred hhhHHHHHHHhHHHHHHHh----hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-C--CC-
Q psy5880 33 SFARMRAWVLQFWLLGILK----FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-K--PL- 99 (328)
Q Consensus 33 ~~~~v~~~~l~~y~~~~~~----l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~--~~- 99 (328)
.++.++++++++|.++++. |+.++.++..+ ..+|+++|++++.+.++|++++++||+.+.++. | + ..
T Consensus 30 ~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~~~~~i~~d~~i~~~~~~~~~vh~~G~~i~~QL~H~Gr~~~~ 109 (363)
T 3l5l_A 30 EDGMINDWHHVHLAGLARGGAGLLVVEATAVAPEGRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASA 109 (363)
T ss_dssp BTTBCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTCCBCSSHHHHHHHHHHHHHHHHTTCEEEEEEECCGGGCSB
T ss_pred CCCCCCHHHHHHHHHHHccCceEEEecceeeCccccCCCCcceecCHHHHHHHHHHHHHHHhcCCEEEEEeccCCccccc
Confidence 4788999999999999983 55677777766 789999999999999999999999999998732 2 1 00
Q ss_pred ------------------Ccc---hh-------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEcc-------
Q psy5880 100 ------------------PPI---LV-------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNV------- 143 (328)
Q Consensus 100 ------------------~Pv---~v-------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~------- 143 (328)
.|+ -+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~~p~~mt~~e---I~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~ 186 (363)
T 3l5l_A 110 NRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDD---IARVKQDFVDAARRARDAGFEWIELHFAHGYLGQ 186 (363)
T ss_dssp CCGGGTSSBCCTTCTTCCCCEESSSCCCBTTBCCCCEECCHHH---HHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHH
T ss_pred cccccccccccccccCCCcccCCCCCccCCCCCCCCccCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHH
Confidence 111 01 1222333222 24678999999999987 899999995
Q ss_pred --CCCCCcchhhhhhh-------HHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC-------CChhhHHHHHHHhccccC
Q psy5880 144 --SSPNTANLRKLQAK-------DQLKHLLKTVVETRNQLAVKPLPPILVKIAPD-------LSLDEKKDIADVVLDSKC 207 (328)
Q Consensus 144 --scPn~~g~~~~~~~-------~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~-------~~~~~~~~~a~~l~~~~~ 207 (328)
.||++ +.|+++++ +++.|++++|++++ + .++||+||++++ ++.++..++++.| .++
T Consensus 187 qFlsp~~-N~R~D~yGGslenR~r~~~eiv~aVr~av---g--~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L--~~~ 258 (363)
T 3l5l_A 187 SFFSEHS-NKRTDAYGGSFDNRSRFLLETLAAVREVW---P--ENLPLTARFGVLEYDGRDEQTLEESIELARRF--KAG 258 (363)
T ss_dssp HHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHTTS---C--TTSCEEEEEEEECSSSCHHHHHHHHHHHHHHH--HHT
T ss_pred HccCCCc-CCCCcccCcCHHHHHHHHHHHHHHHHHHc---C--CCceEEEEecchhcCCCCCCCHHHHHHHHHHH--HHc
Confidence 47987 45554433 57889999888773 3 478999999974 4556788999999 999
Q ss_pred CccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeee
Q psy5880 208 KVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQ 286 (328)
Q Consensus 208 G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~ 286 (328)
|+|+|+++++..... . .-..++ ...+++++++++.++ +|||++|||+|++++.++++.| ||+|+
T Consensus 259 Gvd~i~vs~g~~~~~-~---------~~~~~~---~~~~~~~~~ir~~~~--iPVi~~GgI~s~e~a~~~l~~G~aD~V~ 323 (363)
T 3l5l_A 259 GLDLLSVSVGFTIPD-T---------NIPWGP---AFMGPIAERVRREAK--LPVTSAWGFGTPQLAEAALQANQLDLVS 323 (363)
T ss_dssp TCCEEEEEECCCSSC-C---------CCCCCT---TTTHHHHHHHHHHHT--CCEEECSSTTSHHHHHHHHHTTSCSEEE
T ss_pred CCCEEEEecCccccc-c---------ccCCCc---chhHHHHHHHHHHcC--CcEEEeCCCCCHHHHHHHHHCCCccEEE
Confidence 999999997542200 0 000111 123678889999987 9999999999999999999999 99999
Q ss_pred ehhHHhhcCchHHHHHHHHHH
Q psy5880 287 IYTSFVYHGPPLVTRIKSELE 307 (328)
Q Consensus 287 vg~a~l~~gp~~~~~i~~~l~ 307 (328)
+||+++. +|+|+.++.+++.
T Consensus 324 iGR~~la-nPdl~~k~~~~lg 343 (363)
T 3l5l_A 324 VGRAHLA-DPHWAYFAAKELG 343 (363)
T ss_dssp CCHHHHH-CTTHHHHHHHHTT
T ss_pred ecHHHHh-CchHHHHHHHHcC
Confidence 9999986 5999999987753
No 16
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=99.95 E-value=1e-27 Score=230.61 Aligned_cols=260 Identities=15% Similarity=0.159 Sum_probs=193.3
Q ss_pred CCCcCChhhHHHHHHHhHHHHHHHh---hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-C
Q psy5880 27 THNMLSSFARMRAWVLQFWLLGILK---FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-K 97 (328)
Q Consensus 27 ~~~~~~~~~~v~~~~l~~y~~~~~~---l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~ 97 (328)
..+.+++++.++++.+++|.++++. |+.++.+|..+ ..+|+++|++++.+.++|++++++||+.++++. | +
T Consensus 49 ~~~~a~~dg~~t~~~~~yy~~rA~G~GLiIte~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~~avh~~G~~i~~QL~H~G 128 (419)
T 3l5a_A 49 TVNASTKEGYITKADLAYAARRSNSAGMQVTGAAYIEPYGKLFEYGFNIDHDACIPGLTNMASTMKQHGSLAIIQLAHAG 128 (419)
T ss_dssp CCCCSCTTCCCCHHHHHHHHHTTTSCSEEEEEEEESSGGGCCSTTCEECSSGGGHHHHHHHHHHHHTTSCEEEEEEECCG
T ss_pred CCCccCCCCCCCHHHHHHHHHHhcCCcEEEecceEeCcccccCCCccccccHHHHHHHHHHHHHHHhcCCEEEEEeccCC
Confidence 3444556788999999999998863 45566777666 678999999999999999999999999998732 2 1
Q ss_pred CC------------Ccchh-------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC---------CCC
Q psy5880 98 PL------------PPILV-------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS---------PNT 148 (328)
Q Consensus 98 ~~------------~Pv~v-------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc---------Pn~ 148 (328)
.. .|.-+ ..|..|+..+ ..+.+++|+++|+++.+ +||+||||..| |.+
T Consensus 129 r~~~~~~~~~~~~vapS~i~~~~~~~~~pr~mt~~e---I~~ii~~F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~ 205 (419)
T 3l5a_A 129 RFSNQAILNFGKVYGPSPMTLHSPIEHVVIAMSHEK---INSIIQQYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFS 205 (419)
T ss_dssp GGCHHHHHHHSEEEESSCEEECSSSSEEEEECCHHH---HHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTT
T ss_pred CcccccccCCCceeCCCCCccccCCCCCCccCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHHccCCcc
Confidence 00 01111 1233444332 35778999999999987 89999999776 887
Q ss_pred cchhhh-------hh-hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC--------CCChhhHHHHHHHhcccc-CCccE
Q psy5880 149 ANLRKL-------QA-KDQLKHLLKTVVETRNQLAVKPLPPILVKIAP--------DLSLDEKKDIADVVLDSK-CKVDG 211 (328)
Q Consensus 149 ~g~~~~-------~~-~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~--------~~~~~~~~~~a~~l~~~~-~G~d~ 211 (328)
|.|++ ++ .+++.|++++|++++..- ...++||.+||++ +++.++..++++.| .+ +|+|+
T Consensus 206 -N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~-~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L--~~~~Gvd~ 281 (419)
T 3l5a_A 206 -NRRTDHYGADSLKNRARLCLEVMRAVQEVIDKE-APDNFILGFRATPEETRGSDLGYTIDEFNQLIDWV--MDVSNIQY 281 (419)
T ss_dssp -CCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHH-CCTTCEEEEEECSCEEETTEEEECHHHHHHHHHHH--HHHSCCCC
T ss_pred -cccccCCCCchhhhhhHHHHHHHHHHHHHHhhh-cCCCeeEEEecccccccCCCCCCCHHHHHHHHHHH--HhhcCCcE
Confidence 44443 33 368999999999985321 0157899999998 45778899999999 89 99999
Q ss_pred EEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 212 LIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 212 i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
|+++++....... .....++. .....++.+++.+++++|||++|||+|++++.++++. ||+|++||++
T Consensus 282 I~vs~g~~~~~~~--------~~~~~g~~---~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~-aDlVaiGR~~ 349 (419)
T 3l5a_A 282 LAIASWGRHIYQN--------TSRTPGDH---FGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQH-ADMVGMSSPF 349 (419)
T ss_dssp EEECCTTCCGGGC--------BCCCSSTT---TTSBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG-CSEEEESTHH
T ss_pred EEEeeCCcccccc--------ccCCCCcc---ccHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh-CCcHHHHHHH
Confidence 9999865321100 00112221 1234577888888556999999999999999999999 9999999999
Q ss_pred hhcCchHHHHHHHHH
Q psy5880 292 VYHGPPLVTRIKSEL 306 (328)
Q Consensus 292 l~~gp~~~~~i~~~l 306 (328)
+. +|+|++++.++.
T Consensus 350 Ia-nPdlv~ki~~G~ 363 (419)
T 3l5a_A 350 VT-EPDFVHKLAEQR 363 (419)
T ss_dssp HH-CTTHHHHHHTTC
T ss_pred HH-CcHHHHHHHcCC
Confidence 86 699999998764
No 17
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=99.94 E-value=8.6e-27 Score=220.05 Aligned_cols=237 Identities=14% Similarity=0.108 Sum_probs=182.2
Q ss_pred CcCChhhHHHHHHHhHHHHHHH-h-hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-CC--
Q psy5880 29 NMLSSFARMRAWVLQFWLLGIL-K-FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-KP-- 98 (328)
Q Consensus 29 ~~~~~~~~v~~~~l~~y~~~~~-~-l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~-- 98 (328)
+.+++++.++++++++|.++++ . |+.++.++..+ ..+|+++|++++.+.++|++++++||+.+.++. | +.
T Consensus 27 ~~a~~~g~pt~~~~~yY~~rA~~GLIite~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~~avH~~G~~i~~QL~H~Gr~~ 106 (362)
T 4ab4_A 27 CRADEGRVPNALMAEYYVQRASAGLILSEATSVSPMGVGYPDTPGIWNDEQVRGWNNVTKAVHAAGGRIFLQLWHVGRIS 106 (362)
T ss_dssp CCCBTTTBCCHHHHHHHHHTTTSSEEEEEEEESSGGGCCSTTCCBCSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTSC
T ss_pred CccCCCCCCCHHHHHHHHHHHhhCEEeeeeeEecccccCCCCCCCcCCHHHHHHHHHHHHHHHhcCCEEEEEeccCcccc
Confidence 3445678899999999999887 2 44566666666 678999999999999999999999999998832 2 11
Q ss_pred -------CCcc---hh---------------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC-------
Q psy5880 99 -------LPPI---LV---------------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS------- 145 (328)
Q Consensus 99 -------~~Pv---~v---------------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc------- 145 (328)
..|+ -+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||..|
T Consensus 107 ~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~~pr~mt~~e---I~~ii~~f~~AA~~a~~aGfDgVEih~a~GYLl~QF 183 (362)
T 4ab4_A 107 HPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEE---INDIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQF 183 (362)
T ss_dssp CGGGTTTCCCEESSCCCCSSBCSSCSSCCBCCCCEECCHHH---HHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHH
T ss_pred cccccCCCcccCCCCCCCCccccccccccCCCCCCcCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhh
Confidence 0111 11 1122333222 25678999999999987 89999999887
Q ss_pred --CCCcchhhhhh-------hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC---------ChhhHHHHHHHhccccC
Q psy5880 146 --PNTANLRKLQA-------KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL---------SLDEKKDIADVVLDSKC 207 (328)
Q Consensus 146 --Pn~~g~~~~~~-------~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~---------~~~~~~~~a~~l~~~~~ 207 (328)
|++ +.|++++ .+++.|++++||+++. .+ ||+||+++.. +.++...+++.| +++
T Consensus 184 LSp~~-N~RtD~yGGslenR~rf~~eiv~aVr~~vg-----~~-~v~vRls~~~~~~g~~~~~~~~~~~~la~~l--~~~ 254 (362)
T 4ab4_A 184 LQSST-NQRTDRYGGSLENRARLLLEVTDAAIEVWG-----AQ-RVGVHLAPRADAHDMGDADRAETFTYVAREL--GKR 254 (362)
T ss_dssp HSTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHC-----GG-GEEEEECTTCCSSSCCCTTHHHHHHHHHHHH--HHT
T ss_pred cCCcc-ccccCCCCCchhhHHHHHHHHHHHHHHhcC-----CC-ceEEEeeccccccccCCCCcHHHHHHHHHHH--HHh
Confidence 876 3444332 3689999999999852 34 9999999852 134678999999 999
Q ss_pred CccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeee
Q psy5880 208 KVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQ 286 (328)
Q Consensus 208 G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~ 286 (328)
|+|+|+++++. +|+ ++++++++.++ +|||++||+ |++++.++++.| ||+|+
T Consensus 255 Gvd~i~v~~~~------------------~~~-------~~~~~ik~~~~--iPvi~~Ggi-t~e~a~~~l~~g~aD~V~ 306 (362)
T 4ab4_A 255 GIAFICSRERE------------------ADD-------SIGPLIKEAFG--GPYIVNERF-DKASANAALASGKADAVA 306 (362)
T ss_dssp TCSEEEEECCC------------------CTT-------CCHHHHHHHHC--SCEEEESSC-CHHHHHHHHHTTSCSEEE
T ss_pred CCCEEEECCCC------------------CCH-------HHHHHHHHHCC--CCEEEeCCC-CHHHHHHHHHcCCccEEE
Confidence 99999998753 111 24678888887 999999999 999999999998 99999
Q ss_pred ehhHHhhcCchHHHHHHHHH
Q psy5880 287 IYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 287 vg~a~l~~gp~~~~~i~~~l 306 (328)
+||+++. +|+|+.++.++.
T Consensus 307 iGR~~la-nPdl~~k~~~g~ 325 (362)
T 4ab4_A 307 FGVPFIA-NPDLPARLAADA 325 (362)
T ss_dssp ESHHHHH-CTTHHHHHHTTC
T ss_pred ECHHhHh-CcHHHHHHHcCC
Confidence 9999986 599999998764
No 18
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=99.94 E-value=2.3e-26 Score=217.07 Aligned_cols=238 Identities=16% Similarity=0.121 Sum_probs=183.3
Q ss_pred CCcCChhhHHHHHHHhHHHHHHH-h-hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-CC-
Q psy5880 28 HNMLSSFARMRAWVLQFWLLGIL-K-FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-KP- 98 (328)
Q Consensus 28 ~~~~~~~~~v~~~~l~~y~~~~~-~-l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~- 98 (328)
.+.+++++.++++++++|.++++ . |+.++.++..+ ..+|+++|++++.+.++|++++++||+.+.++. | +.
T Consensus 34 ~~~a~~~g~pt~~~~~yY~~rA~~GLIite~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~~avH~~G~~i~~QL~H~Gr~ 113 (361)
T 3gka_A 34 RARAGDTRTPNALMARYYAERASAGLIISEATSVTPQGVGYASTPGIWSPEQVDGWRLVTDAVHAAGGRIFLQLWHVGRV 113 (361)
T ss_dssp CCCSTTTTCCCHHHHHHHHTTTTSSEEEEEEEESSGGGCCSTTCCBSSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTS
T ss_pred CCccCCCCCCCHHHHHHHHHHHhCCEEEEcceeecccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCeEEEeeccCCcc
Confidence 33445678899999999999887 2 44566666666 678999999999999999999999999998832 2 11
Q ss_pred --------CCcc---hh---------------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC------
Q psy5880 99 --------LPPI---LV---------------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS------ 145 (328)
Q Consensus 99 --------~~Pv---~v---------------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc------ 145 (328)
..|+ -+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||..|
T Consensus 114 ~~~~~~~g~~~vapS~i~~~~~~~~~~g~~~~~~pr~mt~~e---I~~ii~~f~~AA~~A~~aGfDgVEih~a~GYLl~Q 190 (361)
T 3gka_A 114 SDPVFLDGALPVAPSAIAPGGHVSLVRPQRPYVTPRALELDE---IPGVVAAFRRGAENARAAGFDGVEVHGANGYLLDQ 190 (361)
T ss_dssp CCGGGTTTCCCEESSSCCCSSBCSSCSSCCBCCCCEECCGGG---HHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHH
T ss_pred ccccccCCCCcccCCCCCCCCcccccccccCCCCCccCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEECCcCccHHHh
Confidence 0111 11 1122333322 35779999999999987 89999999887
Q ss_pred ---CCCcchhhhhh-------hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC---------ChhhHHHHHHHhcccc
Q psy5880 146 ---PNTANLRKLQA-------KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL---------SLDEKKDIADVVLDSK 206 (328)
Q Consensus 146 ---Pn~~g~~~~~~-------~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~---------~~~~~~~~a~~l~~~~ 206 (328)
|++ +.|++++ .+++.|++++||+++. .+ ||+|||++.. +.++...+++.| ++
T Consensus 191 FLsp~~-N~RtD~yGGslenR~rf~~evv~aVr~~vg-----~~-~v~vRls~~~~~~g~~~~~~~~~~~~la~~l--~~ 261 (361)
T 3gka_A 191 FLQDSA-NRRTDAYGGSIENRARLLLEVVDAAIDVWS-----AA-RVGVHLAPRGDAHTMGDSDPAATFGHVAREL--GR 261 (361)
T ss_dssp HHSTTT-CCCCSTTSSSHHHHSHHHHHHHHHHHHHHC-----GG-GEEEEECTTCCSSSCCCSCHHHHHHHHHHHH--HH
T ss_pred ccCccc-ccccCCCCCChhhcHHHHHHHHHHHHHHcC-----CC-eEEEecccccccCCCCCCCcHHHHHHHHHHH--HH
Confidence 886 3444333 3689999999999852 34 9999999852 135678899999 99
Q ss_pred CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCee
Q psy5880 207 CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLV 285 (328)
Q Consensus 207 ~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V 285 (328)
+|+|+|+++++.. ++ ++++++++.++ +|||++||| |++++.++++.| ||+|
T Consensus 262 ~Gvd~i~v~~~~~------------------~~-------~~~~~ik~~~~--iPvi~~Ggi-t~e~a~~~l~~G~aD~V 313 (361)
T 3gka_A 262 RRIAFLFARESFG------------------GD-------AIGQQLKAAFG--GPFIVNENF-TLDSAQAALDAGQADAV 313 (361)
T ss_dssp TTCSEEEEECCCS------------------TT-------CCHHHHHHHHC--SCEEEESSC-CHHHHHHHHHTTSCSEE
T ss_pred cCCCEEEECCCCC------------------CH-------HHHHHHHHHcC--CCEEEeCCC-CHHHHHHHHHcCCccEE
Confidence 9999999987531 11 24678888887 999999999 999999999998 9999
Q ss_pred eehhHHhhcCchHHHHHHHHH
Q psy5880 286 QIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 286 ~vg~a~l~~gp~~~~~i~~~l 306 (328)
++||+++. +|+|+++++++.
T Consensus 314 ~iGR~~la-dPdl~~k~~~g~ 333 (361)
T 3gka_A 314 AWGKLFIA-NPDLPRRFKLNA 333 (361)
T ss_dssp EESHHHHH-CTTHHHHHHHTC
T ss_pred EECHHhHh-CcHHHHHHHhCC
Confidence 99999986 599999998764
No 19
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=99.94 E-value=1.3e-25 Score=238.50 Aligned_cols=190 Identities=18% Similarity=0.259 Sum_probs=157.4
Q ss_pred HHHHHHHHHhcc-cccEEEEccCCCCCcch-----hhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHH
Q psy5880 123 LDSVKGILKFGD-VAHYFVVNVSSPNTANL-----RKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKK 196 (328)
Q Consensus 123 ~~~~~~a~~~~~-~~d~ieiN~scPn~~g~-----~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~ 196 (328)
++|.++++++.+ ++|+|+||++||++... ...++++.+.+++++|++. .++||++|++++.+ ++.
T Consensus 648 ~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~-------~~~Pv~vK~~~~~~--~~~ 718 (1025)
T 1gte_A 648 NDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQA-------VQIPFFAKLTPNVT--DIV 718 (1025)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHH-------CSSCEEEEECSCSS--CHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHh-------hCCceEEEeCCChH--HHH
Confidence 444444444432 59999999999997422 2346789999999999987 68999999999876 478
Q ss_pred HHHHHhccccCCccEEEEecCCccch--hh---hcccc----ccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecC
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRY--EY---LDARY----KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGG 267 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~--~~---~~~~~----~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GG 267 (328)
++++.+ .++|+|+|+++||+.++. +. ..+.. ....||++|++++|.++++++++++.++ ++|||++||
T Consensus 719 ~~a~~~--~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~-~ipvi~~GG 795 (1025)
T 1gte_A 719 SIARAA--KEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALP-GFPILATGG 795 (1025)
T ss_dssp HHHHHH--HHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHST-TCCEEEESS
T ss_pred HHHHHH--HHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHcC-CCCEEEecC
Confidence 899999 999999999999876542 11 01111 1345789999999999999999999983 499999999
Q ss_pred CCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHHhcc
Q psy5880 268 VFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGA 324 (328)
Q Consensus 268 I~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~G~ 324 (328)
|+|++|+.++|++|||+|++||++++++|.+++++.++++.+|..+|+++++|++|.
T Consensus 796 I~s~~da~~~l~~Ga~~v~vg~~~l~~~~~~~~~~~~~l~~~l~~~G~~~i~~l~g~ 852 (1025)
T 1gte_A 796 IDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQ 852 (1025)
T ss_dssp CCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHHTTCGGGTTSBTT
T ss_pred cCCHHHHHHHHHcCCCEEEEeeccccCCccHHHHHHHHHHHHHHHcCCCCHHHHhCC
Confidence 999999999999999999999999987899999999999999999999999999983
No 20
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=99.94 E-value=8.3e-26 Score=214.23 Aligned_cols=239 Identities=12% Similarity=0.117 Sum_probs=178.9
Q ss_pred hhhHHHHHHHhHHHHHHH-h-hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-CCC-----
Q psy5880 33 SFARMRAWVLQFWLLGIL-K-FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-KPL----- 99 (328)
Q Consensus 33 ~~~~v~~~~l~~y~~~~~-~-l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~~----- 99 (328)
+++.++++.+++|.++++ . ++.++.++..+ ..+|+++|++++.+.+.|++++++||+.+.++. | +..
T Consensus 33 ~~g~~t~~~~~~y~~rA~~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~ 112 (365)
T 2gou_A 33 PGDVANHMMAIYYAQRASAGLIVSEGTQISPTAKGYAWTPGIYTPEQIAGWRIVTEAVHAKGCAIFAQLWHVGRVTHPDN 112 (365)
T ss_dssp TTTBCCHHHHHHHHTTTTSSEEEEEEEESSGGGCCSTTCCBSSSHHHHHHHHHHHHHHHHHSCEEEEEEECCTTSSCGGG
T ss_pred CCCCCCHHHHHHHHHHhcCCEEEECceeecccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCeEEEEeecCCCcccccc
Confidence 567788999999998886 2 34455555544 678999999999999999999999999998732 2 110
Q ss_pred ----Cc---chh---------------------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC-----
Q psy5880 100 ----PP---ILV---------------------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS----- 145 (328)
Q Consensus 100 ----~P---v~v---------------------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc----- 145 (328)
.| .-+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||..|
T Consensus 113 ~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~~e---I~~~i~~f~~aA~~a~~aGfDgVeih~a~gYLl~ 189 (365)
T 2gou_A 113 IDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTKAD---IAQVIADYRQAALNAMEAGFDGIELHAANGYLIN 189 (365)
T ss_dssp TTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCHHH---HHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHH
T ss_pred cCCCCccCCCCccccccccccccccccccccCCCCCCcCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEecccchhHh
Confidence 11 101 1122333222 24668899999988876 79999999766
Q ss_pred ----CCCcchhhhh-------hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC---------ChhhHHHHHHHhccc
Q psy5880 146 ----PNTANLRKLQ-------AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL---------SLDEKKDIADVVLDS 205 (328)
Q Consensus 146 ----Pn~~g~~~~~-------~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~---------~~~~~~~~a~~l~~~ 205 (328)
|++ +.|.++ ..+++.|++++||+++ + .+ ||++||++.. +.++..++++.+ +
T Consensus 190 qFlsp~~-N~R~D~yGGslenr~r~~~eiv~avr~~v---g--~~-pv~vris~~~~~~~~~~~~~~~~~~~~a~~l--~ 260 (365)
T 2gou_A 190 QFIDSEA-NNRSDEYGGSLENRLRFLDEVVAALVDAI---G--AE-RVGVRLAPLTTLNGTVDADPILTYTAAAALL--N 260 (365)
T ss_dssp HHHSGGG-CCCCSTTSSSHHHHTHHHHHHHHHHHHHH---C--GG-GEEEEECSSCCTTSCCCSSHHHHHHHHHHHH--H
T ss_pred hccCCCc-cCcCcccCcchhhhHHHHHHHHHHHHHHc---C--CC-cEEEEEccccccCCCCCCCCHHHHHHHHHHH--H
Confidence 876 344432 2468999999999884 2 35 9999999842 345688899999 9
Q ss_pred cCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCe
Q psy5880 206 KCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASL 284 (328)
Q Consensus 206 ~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~ 284 (328)
++|+|+|++++++.. + ++. .+ +++++++++.++ +|||++||| |++++.++|+.| ||+
T Consensus 261 ~~G~d~i~v~~~~~~-------------~---~~~-~~--~~~~~~i~~~~~--iPvi~~Ggi-~~~~a~~~l~~g~aD~ 318 (365)
T 2gou_A 261 KHRIVYLHIAEVDWD-------------D---APD-TP--VSFKRALREAYQ--GVLIYAGRY-NAEKAEQAINDGLADM 318 (365)
T ss_dssp HTTCSEEEEECCBTT-------------B---CCC-CC--HHHHHHHHHHCC--SEEEEESSC-CHHHHHHHHHTTSCSE
T ss_pred HcCCCEEEEeCCCcC-------------C---CCC-cc--HHHHHHHHHHCC--CcEEEeCCC-CHHHHHHHHHCCCcce
Confidence 999999999986532 0 011 11 367889999997 999999999 999999999998 999
Q ss_pred eeehhHHhhcCchHHHHHHHHH
Q psy5880 285 VQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 285 V~vg~a~l~~gp~~~~~i~~~l 306 (328)
|++||+++. +|+|++++.++.
T Consensus 319 V~igR~~i~-~P~l~~~~~~g~ 339 (365)
T 2gou_A 319 IGFGRPFIA-NPDLPERLRHGY 339 (365)
T ss_dssp EECCHHHHH-CTTHHHHHHHTC
T ss_pred ehhcHHHHh-CchHHHHHHcCC
Confidence 999999996 599999998653
No 21
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=99.93 E-value=3.7e-25 Score=211.98 Aligned_cols=246 Identities=16% Similarity=0.151 Sum_probs=180.7
Q ss_pred hhHHHHHHHhHHHHHHHh---hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-CCC-----
Q psy5880 34 FARMRAWVLQFWLLGILK---FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-KPL----- 99 (328)
Q Consensus 34 ~~~v~~~~l~~y~~~~~~---l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~~----- 99 (328)
++.++++++++|.++++. ++.++.++..+ ..+|+++|++++.+.+.|++++++||+.+.++. | +..
T Consensus 45 ~g~pt~~~~~yy~~rA~G~GLIitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~ 124 (402)
T 2hsa_B 45 NNIPQAALGEYYEQRATAGGFLITEGTMISPTSAGFPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVGRASHEVY 124 (402)
T ss_dssp GGCCCHHHHHHHHHHCCTTCEEECCCEESSTTCCCSTTCCBCSSHHHHHHHHHHHHHHHHTTCEEEEEEECCTTSCCGGG
T ss_pred CCCCCHHHHHHHHHHhccCCEEEecceeeccccccCCCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeccCCccccccc
Confidence 357889999999998873 34555555544 678999999999999999999999999998732 2 110
Q ss_pred -----Cc---chh------------------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC-------
Q psy5880 100 -----PP---ILV------------------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS------- 145 (328)
Q Consensus 100 -----~P---v~v------------------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc------- 145 (328)
.| .-+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||..|
T Consensus 125 ~~~g~~~~apS~v~~~~~~~~~~~~g~~~~~~~p~~mt~~e---I~~ii~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QF 201 (402)
T 2hsa_B 125 QPAGAAPISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYE---ISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQF 201 (402)
T ss_dssp CTTCCCCEESCSCCCCTTCEEECTTSCEEECCCCEECCGGG---HHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHH
T ss_pred ccCCCccccCCCcccccccccccccccccCCCCCccCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHhc
Confidence 11 111 1233444332 35678899999999876 89999999875
Q ss_pred --CCCcchhhh------h-hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC---------ChhhHHHHHHHhccccC
Q psy5880 146 --PNTANLRKL------Q-AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL---------SLDEKKDIADVVLDSKC 207 (328)
Q Consensus 146 --Pn~~g~~~~------~-~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~---------~~~~~~~~a~~l~~~~~ 207 (328)
|+++ .|.+ + ..+++.|++++||+++. .+ ||+|||++.. +.++..++++.| +++
T Consensus 202 Lsp~~N-~RtD~yGGslenR~rf~~Eiv~aVr~avg-----~~-~V~vRls~~~~~~g~~~~~~~~~~~~la~~l--e~~ 272 (402)
T 2hsa_B 202 LKDGIN-DRTDEYGGSLANRCKFITQVVQAVVSAIG-----AD-RVGVRVSPAIDHLDAMDSNPLSLGLAVVERL--NKI 272 (402)
T ss_dssp HCTTTC-CCCSTTSSSHHHHHHHHHHHHHHHHHHHC-----GG-GEEEEECSSCCSTTCCCSCHHHHHHHHHHHH--HHH
T ss_pred cCCccC-ccCCccCcChhhhhHHHHHHHHHHHHHhC-----CC-cEEEEeccccccCCCCCCCCHHHHHHHHHHH--Hhc
Confidence 8863 3332 2 24789999999999852 23 9999999852 235688999999 999
Q ss_pred C------ccEEEEecCCccchhhhccccccccCCCCCCcCch-HHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 208 K------VDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRN-KSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 208 G------~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~-~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
| +|+|++++++.... ...+. ..++ .+ ..+++++++++.++ +|||++||| +++++.++|+.
T Consensus 273 G~~gg~~vd~i~v~~~~~~~~-~~~~~-----~~~~----~~~~~~~~~~~vk~~~~--iPvi~~G~i-~~~~a~~~l~~ 339 (402)
T 2hsa_B 273 QLHSGSKLAYLHVTQPRYVAY-GQTEA-----GRLG----SEEEEARLMRTLRNAYQ--GTFICSGGY-TRELGIEAVAQ 339 (402)
T ss_dssp HHHHTSCCSEEEEECCCCCTT-TTSSS-----TTTT----HHHHHHHHHHHHHHHCS--SCEEEESSC-CHHHHHHHHHT
T ss_pred CCccCCceEEEEEecCccccc-cCCcc-----cccc----CCcchHHHHHHHHHHCC--CCEEEeCCC-CHHHHHHHHHC
Confidence 9 99999998653210 00000 0000 01 24678889999997 999999999 99999999999
Q ss_pred c-cCeeeehhHHhhcCchHHHHHHHH
Q psy5880 281 G-ASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 281 G-Ad~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
| ||+|++||+++. +|+|++++.++
T Consensus 340 g~aD~V~igR~~l~-dP~l~~k~~~g 364 (402)
T 2hsa_B 340 GDADLVSYGRLFIS-NPDLVMRIKLN 364 (402)
T ss_dssp TSCSEEEESHHHHH-CTTHHHHHHHT
T ss_pred CCCceeeecHHHHh-CchHHHHHHhC
Confidence 8 999999999986 59999999865
No 22
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=99.93 E-value=3.4e-25 Score=210.72 Aligned_cols=239 Identities=14% Similarity=0.064 Sum_probs=177.2
Q ss_pred hhhHHHHHHHhHHHHHHH-h-hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-CCC-----
Q psy5880 33 SFARMRAWVLQFWLLGIL-K-FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-KPL----- 99 (328)
Q Consensus 33 ~~~~v~~~~l~~y~~~~~-~-l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~~----- 99 (328)
+++.++++.+.+|.+++. . ++.++.++..+ ..+|+++|++++.+.+.|++++++||+.+.++. | +..
T Consensus 37 ~~g~pt~~~~~~y~~rA~~GLiitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~ 116 (377)
T 2r14_A 37 PDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIALQLWHVGRVSHELV 116 (377)
T ss_dssp TTSCCCHHHHHHHHHTTTSSCEEEEEEESSGGGCCBTTCCBSSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTSCCTTT
T ss_pred CCCCCCHHHHHHHHHHhcCCEEEEcceeeccccccCCCCcccCCHHHHHHHHHHHHHHhhcCCeEEEEccCCcccccccc
Confidence 466679999999999886 2 34445555444 678999999999999999999999999998732 2 110
Q ss_pred -----Cc---chh---------------------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC----
Q psy5880 100 -----PP---ILV---------------------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS---- 145 (328)
Q Consensus 100 -----~P---v~v---------------------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc---- 145 (328)
.| .-+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||..|
T Consensus 117 ~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~e---I~~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl 193 (377)
T 2r14_A 117 QPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDE---IPGIVEDYRQAAQRAKRAGFDMVEVHAANACLP 193 (377)
T ss_dssp SGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGG---HHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHH
T ss_pred ccCCCcccCCCcccccccccccccccccccccCCCCCccCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEcCcccchH
Confidence 01 111 1223343332 25678899999988876 79999999886
Q ss_pred -----CCCcchhhh------h-hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC---------CChhhHHHHHHHhcc
Q psy5880 146 -----PNTANLRKL------Q-AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD---------LSLDEKKDIADVVLD 204 (328)
Q Consensus 146 -----Pn~~g~~~~------~-~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~---------~~~~~~~~~a~~l~~ 204 (328)
|+++ .|.+ + ..+++.|++++|++++ + .+ ||+|||++. .+.++..++++.|
T Consensus 194 ~QFlsp~~N-~R~D~yGGslenR~r~~~eiv~aVr~av---g--~~-~v~vrls~~~~~~~~~~~~~~~~~~~la~~l-- 264 (377)
T 2r14_A 194 NQFLATGTN-RRTDQYGGSIENRARFPLEVVDAVAEVF---G--PE-RVGIRLTPFLELFGLTDDEPEAMAFYLAGEL-- 264 (377)
T ss_dssp HHHHSTTTC-CCCSTTSSSHHHHHHHHHHHHHHHHHHH---C--GG-GEEEEECTTCCCTTCCCSCHHHHHHHHHHHH--
T ss_pred HhccCCccc-cCCCccCcchhhchHHHHHHHHHHHHHc---C--CC-cEEEEeccccccCCCCCCCCHHHHHHHHHHH--
Confidence 8863 3332 2 3468999999999885 2 34 999999985 2346688999999
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cC
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-AS 283 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad 283 (328)
+++|+|+|++++++... ...+. .+++++++++.++ +|||++||| +++++.++++.| ||
T Consensus 265 e~~Gvd~i~v~~~~~~~-------------~~~~~-----~~~~~~~ik~~~~--iPvi~~Ggi-~~~~a~~~l~~g~aD 323 (377)
T 2r14_A 265 DRRGLAYLHFNEPDWIG-------------GDITY-----PEGFREQMRQRFK--GGLIYCGNY-DAGRAQARLDDNTAD 323 (377)
T ss_dssp HHTTCSEEEEECCC-------------------CC-----CTTHHHHHHHHCC--SEEEEESSC-CHHHHHHHHHTTSCS
T ss_pred HHcCCCEEEEeCCcccC-------------CCCcc-----hHHHHHHHHHHCC--CCEEEECCC-CHHHHHHHHHCCCce
Confidence 99999999999865320 01111 1366788999987 999999999 699999999998 99
Q ss_pred eeeehhHHhhcCchHHHHHHHH
Q psy5880 284 LVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 284 ~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+|++||+++. +|+|++++.++
T Consensus 324 ~V~igR~~l~-~P~l~~k~~~g 344 (377)
T 2r14_A 324 AVAFGRPFIA-NPDLPERFRLG 344 (377)
T ss_dssp EEEESHHHHH-CTTHHHHHHHT
T ss_pred EEeecHHHHh-CchHHHHHHcC
Confidence 9999999986 59999999764
No 23
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=99.93 E-value=1.2e-24 Score=206.28 Aligned_cols=238 Identities=16% Similarity=0.201 Sum_probs=177.3
Q ss_pred hhhHHHHHHHhHHHHHHH-h-hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-CCC-----
Q psy5880 33 SFARMRAWVLQFWLLGIL-K-FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-KPL----- 99 (328)
Q Consensus 33 ~~~~v~~~~l~~y~~~~~-~-l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~~----- 99 (328)
+++.++++.+++|.+++. . ++.++.++..+ ..+|+++|++++.+.+.|++++++||+.+.++. | +..
T Consensus 33 ~~g~~t~~~~~~y~~rAg~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~ 112 (364)
T 1vyr_A 33 PGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSI 112 (364)
T ss_dssp TTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTSSCGGG
T ss_pred CCCCCCHHHHHHHHHHhcCCEEEEccccccccccCCCCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeccCCcccCccc
Confidence 466678999999999885 1 34455555544 678999999999999999999999999988732 2 110
Q ss_pred -----Cc---chh--------------------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC-----
Q psy5880 100 -----PP---ILV--------------------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS----- 145 (328)
Q Consensus 100 -----~P---v~v--------------------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc----- 145 (328)
.| .-+ ..|..|+..+ ....+++|+++|+++.+ ++|+||||.+|
T Consensus 113 ~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~~e---I~~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~ 189 (364)
T 1vyr_A 113 QPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDE---IPGIVNDFRQAVANAREAGFDLVELHSAHGYLLH 189 (364)
T ss_dssp SGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGG---HHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHH
T ss_pred ccCCCccccCCCcccccccccccccccccccCCCCCCcCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEcCccchHHH
Confidence 01 111 1222333322 24678899999988876 79999999876
Q ss_pred ----CCCcchhhh-------hhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC--C--------ChhhHHHHHHHhcc
Q psy5880 146 ----PNTANLRKL-------QAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD--L--------SLDEKKDIADVVLD 204 (328)
Q Consensus 146 ----Pn~~g~~~~-------~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~--~--------~~~~~~~~a~~l~~ 204 (328)
|++ +.|.+ ...+++.|++++||+++ + .+ ||++||++. + +.++..++++.+
T Consensus 190 qFlsp~~-N~R~D~yGGslenr~r~~~eiv~avr~~v---g--~~-~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l-- 260 (364)
T 1vyr_A 190 QFLSPSS-NQRTDQYGGSVENRARLVLEVVDAVCNEW---S--AD-RIGIRVSPIGTFQNVDNGPNEEADALYLIEEL-- 260 (364)
T ss_dssp HHHCTTT-CCCCSTTSSSHHHHTHHHHHHHHHHHHHS---C--GG-GEEEEECCSSCBTTBCCCTTHHHHHHHHHHHH--
T ss_pred hccCCcc-cccCCcCCcchhcChhhHHHHHHHHHHhc---C--CC-cEEEEEccccccccccCCCCCHHHHHHHHHHH--
Confidence 775 23332 23478999999999883 2 25 999999986 2 234577899999
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cC
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-AS 283 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad 283 (328)
+++|+|+|++++++.. ++ ++ . .+++++++++.++ +|||++||| |++++.++++.| ||
T Consensus 261 ~~~G~d~i~v~~~~~~-------------~~---~~-~--~~~~~~~v~~~~~--iPvi~~Ggi-t~~~a~~~l~~g~aD 318 (364)
T 1vyr_A 261 AKRGIAYLHMSETDLA-------------GG---KP-Y--SEAFRQKVRERFH--GVIIGAGAY-TAEKAEDLIGKGLID 318 (364)
T ss_dssp HHTTCSEEEEECCBTT-------------BC---CC-C--CHHHHHHHHHHCC--SEEEEESSC-CHHHHHHHHHTTSCS
T ss_pred HHhCCCEEEEecCccc-------------CC---Cc-c--cHHHHHHHHHHCC--CCEEEECCc-CHHHHHHHHHCCCcc
Confidence 9999999999986432 00 11 1 2467889999987 999999999 999999999998 99
Q ss_pred eeeehhHHhhcCchHHHHHHHH
Q psy5880 284 LVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 284 ~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+|++||+++. +|+|++++.++
T Consensus 319 ~V~~gR~~l~-~P~~~~~~~~g 339 (364)
T 1vyr_A 319 AVAFGRDYIA-NPDLVARLQKK 339 (364)
T ss_dssp EEEESHHHHH-CTTHHHHHHHT
T ss_pred EEEECHHHHh-ChhHHHHHHcC
Confidence 9999999986 59999999765
No 24
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=99.92 E-value=6.5e-25 Score=208.80 Aligned_cols=239 Identities=13% Similarity=0.061 Sum_probs=176.7
Q ss_pred hhHHHHHHHhHHHHHHHh---hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-CCC-----
Q psy5880 34 FARMRAWVLQFWLLGILK---FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-KPL----- 99 (328)
Q Consensus 34 ~~~v~~~~l~~y~~~~~~---l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~~----- 99 (328)
++.++++++++|.++++. ++.++.++..+ ..+|+++|++++.+.+.|++++++||+.+.++. | +..
T Consensus 43 ~g~pt~~~~~yy~~rA~g~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~ 122 (376)
T 1icp_A 43 GYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGYKDVPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNKDF 122 (376)
T ss_dssp GGSCCHHHHHHHHHTCCTTCEEECCCEECSGGGCCSTTCCBCSSHHHHHHHHHHHHHHHHTTCEEEEEEECCTTSSCTTT
T ss_pred CCCCCHHHHHHHHHhcCCeeEEEECceeeccccccCcccCccCCHHHHHHHHHHHHHHHhcCCeEEEEeecCCCCcCccc
Confidence 367889999999998863 34555565554 678999999999999999999999999998732 2 110
Q ss_pred -----Cc---chh----------------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC---------
Q psy5880 100 -----PP---ILV----------------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS--------- 145 (328)
Q Consensus 100 -----~P---v~v----------------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc--------- 145 (328)
.| .-+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||..|
T Consensus 123 ~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~p~~mt~~e---I~~~i~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFls 199 (376)
T 1icp_A 123 QPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDE---IPQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMK 199 (376)
T ss_dssp SGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTT---HHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHC
T ss_pred ccCCCceecCCCCCCccccccccccccCCCCCCcCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEcCccchhhhhccC
Confidence 01 111 1223343332 35678899999998876 89999999876
Q ss_pred CCCcchhhh-------hhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC---------ChhhHHHHHHHhccccCCc
Q psy5880 146 PNTANLRKL-------QAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL---------SLDEKKDIADVVLDSKCKV 209 (328)
Q Consensus 146 Pn~~g~~~~-------~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~---------~~~~~~~~a~~l~~~~~G~ 209 (328)
|++ +.|.+ ...+++.+++++||+++ + .+ ||++|+++.. +.++..++++.| +++|+
T Consensus 200 p~~-N~R~D~yGGslenR~r~~~eiv~aVr~av---g--~~-~V~vrls~~~~~~g~~~~~~~~~~~~la~~l--e~~Gv 270 (376)
T 1icp_A 200 DQV-NDRSDKYGGSLENRCRFALEIVEAVANEI---G--SD-RVGIRISPFAHYNEAGDTNPTALGLYMVESL--NKYDL 270 (376)
T ss_dssp TTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHH---C--GG-GEEEEECTTCCTTTCCCSCHHHHHHHHHHHH--GGGCC
T ss_pred Ccc-cCCCCccCccHHHhHHHHHHHHHHHHHHh---c--CC-ceEEEeccccccCCCCCCCCHHHHHHHHHHH--HHcCC
Confidence 876 33332 23478999999999885 2 35 9999999742 234578899999 99999
Q ss_pred cEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeeh
Q psy5880 210 DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIY 288 (328)
Q Consensus 210 d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg 288 (328)
|+|++++++.... ..+.. ..++++++++.++ +|||++||| +++++.++|+.| ||+|++|
T Consensus 271 d~i~v~~~~~~~~-------------~~~~~----~~~~~~~vr~~~~--iPvi~~G~i-~~~~a~~~l~~g~aD~V~~g 330 (376)
T 1icp_A 271 AYCHVVEPRMKTA-------------WEKIE----CTESLVPMRKAYK--GTFIVAGGY-DREDGNRALIEDRADLVAYG 330 (376)
T ss_dssp SEEEEECCSCCC-----------------------CCCCSHHHHHHCC--SCEEEESSC-CHHHHHHHHHTTSCSEEEES
T ss_pred CEEEEcCCcccCC-------------CCccc----cHHHHHHHHHHcC--CCEEEeCCC-CHHHHHHHHHCCCCcEEeec
Confidence 9999998653200 00000 1244678888887 999999999 899999999988 9999999
Q ss_pred hHHhhcCchHHHHHHHH
Q psy5880 289 TSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 289 ~a~l~~gp~~~~~i~~~ 305 (328)
|+++. +|+|++++.++
T Consensus 331 R~~l~-~P~l~~k~~~g 346 (376)
T 1icp_A 331 RLFIS-NPDLPKRFELN 346 (376)
T ss_dssp HHHHH-CTTHHHHHHHT
T ss_pred HHHHh-CccHHHHHHcC
Confidence 99986 59999999765
No 25
>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*
Probab=99.92 E-value=1.6e-24 Score=206.04 Aligned_cols=241 Identities=12% Similarity=0.071 Sum_probs=179.7
Q ss_pred CcCC-hhhHHH-HHHHhHHHHHHH-h-hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-C-
Q psy5880 29 NMLS-SFARMR-AWVLQFWLLGIL-K-FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-K- 97 (328)
Q Consensus 29 ~~~~-~~~~v~-~~~l~~y~~~~~-~-l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~- 97 (328)
+.+. +++.++ ++++++|.+++. . |+.++.++..+ ..+|+++|++++.+.++|++++++||+.++++. | +
T Consensus 30 ~~a~~~~g~pt~~~~~~yY~~rA~~GLIite~~~v~~~g~~~~~~~gi~~d~~i~~~k~~~~avh~~G~~i~~QL~H~Gr 109 (379)
T 3aty_A 30 CQATEDDHVPRTESMLKYYEDRASAGLIIAEATMVQPNYTGFLTEPGIYSDAQIEEWRKIVDAVHKKGGLIFLQLIHAGR 109 (379)
T ss_dssp CCBCTTTCCBCHHHHHHHHHTTTTSSEEEEEEEESSTTCCSSSSCCBSSSHHHHHHHHHHHHHHHHTTCCEEEEEECCGG
T ss_pred CcccCCCCccCHHHHHHHHHHHhCCCeEEECceecccccccCCCCCCcCCHHHHHHHHHHHHHHHhcCCEEEEEeccCCc
Confidence 3444 567788 999999999885 1 44566666665 678999999999999999999999999998732 2 1
Q ss_pred -CC------------Cc-----c---hhc--------------------ccCCcccccccchh-HHHHHHHHHHHHhc-c
Q psy5880 98 -PL------------PP-----I---LVK--------------------IAPDLSLDEKKDIA-DVVLDSVKGILKFG-D 134 (328)
Q Consensus 98 -~~------------~P-----v---~vk--------------------i~~~l~~~~n~~~~-~~i~~~~~~a~~~~-~ 134 (328)
.. .| + -+. .|..|+..+ .. +.+++|+++|+++. +
T Consensus 110 ~~~~~~~~~~~~~g~~~~~~~~~apS~i~~~~~~~~~~~~~~g~~~~~~~pr~lt~~e---I~~~~i~~f~~AA~~a~~~ 186 (379)
T 3aty_A 110 AGIPEKILQQSKSDQDPLAGRLLAASAIPIKDHRIPAYFAASGEKETYGVPEELTDDE---VRDGIIPLFVEGAKNAIFK 186 (379)
T ss_dssp GSCHHHHTTSCCCSSSTTTTCCEESSSCCCCSCCBCTTTSTTSSCBCCCCCEECCHHH---HHHTHHHHHHHHHHHHHHT
T ss_pred ccCcccccccccCCCCCccCcccCCCCCccccccccccccccccccCCCCCccCCHHH---HhHHHHHHHHHHHHHHHHh
Confidence 00 11 1 110 111222221 24 57889999999988 7
Q ss_pred -cccEEEEccCC---------CCCcchh-hh-------h-hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC-----
Q psy5880 135 -VAHYFVVNVSS---------PNTANLR-KL-------Q-AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL----- 190 (328)
Q Consensus 135 -~~d~ieiN~sc---------Pn~~g~~-~~-------~-~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~----- 190 (328)
++|+||||..| |++ +.| .+ + ..+++.|++++||+++. .+ ||++||++..
T Consensus 187 aGfDgVEih~a~GYLl~QFlsp~~-N~R~~D~yGG~slenR~r~~~eiv~aVr~avg-----~~-~v~vRis~~~~~~~~ 259 (379)
T 3aty_A 187 AGFDGVEIHGANGYLLDAFFRESS-NKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVG-----SD-RVGLRISPLNGVHGM 259 (379)
T ss_dssp SCCSEEEEEECTTSHHHHHHSTTT-CCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHC-----GG-GEEEEECTTCCGGGC
T ss_pred cCCCEEEEcCcCchHHhhccCCCC-CccccCCCCccChhhhHHHHHHHHHHHHHhcC-----CC-eEEEEECcccccccC
Confidence 89999999765 886 444 32 2 24689999999998852 23 8999999842
Q ss_pred ----ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEec
Q psy5880 191 ----SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVG 266 (328)
Q Consensus 191 ----~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~G 266 (328)
+.++..++++.| +++|+|+|+++++... .+. .+. + ++++++.++ +|||++|
T Consensus 260 ~~~~~~~~~~~la~~l--~~~Gvd~i~v~~~~~~-----------------~~~-~~~--~-~~~ir~~~~--iPvi~~G 314 (379)
T 3aty_A 260 IDSNPEALTKHLCKKI--EPLSLAYLHYLRGDMV-----------------NQQ-IGD--V-VAWVRGSYS--GVKISNL 314 (379)
T ss_dssp CCSCHHHHHHHHHHHH--GGGCCSEEEEECSCTT-----------------SCC-CCC--H-HHHHHTTCC--SCEEEES
T ss_pred CCCCCHHHHHHHHHHH--HHhCCCEEEEcCCCcC-----------------CCC-ccH--H-HHHHHHHCC--CcEEEEC
Confidence 346688999999 9999999999985421 011 111 5 788898887 9999999
Q ss_pred CCCCHHHHHHHHHhc-cCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 267 GVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 267 GI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
|| |++++.++|+.| ||+|++||+++. +|+|++++.++.
T Consensus 315 ~i-t~~~a~~~l~~g~aD~V~igR~~l~-~P~l~~k~~~g~ 353 (379)
T 3aty_A 315 RY-DFEEADQQIREGKVDAVAFGAKFIA-NPDLVERAQQNW 353 (379)
T ss_dssp SC-CHHHHHHHHHTTSCSEEEESHHHHH-CTTHHHHHHHTC
T ss_pred CC-CHHHHHHHHHcCCCeEEEecHHHHh-CcHHHHHHHcCC
Confidence 99 999999999998 999999999996 599999998653
No 26
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=99.90 E-value=1.1e-23 Score=199.30 Aligned_cols=247 Identities=16% Similarity=0.140 Sum_probs=180.0
Q ss_pred CCCcCChhhHHHHHHHhHHHHHHHh--hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----C-C-
Q psy5880 27 THNMLSSFARMRAWVLQFWLLGILK--FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----L-K- 97 (328)
Q Consensus 27 ~~~~~~~~~~v~~~~l~~y~~~~~~--l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~- 97 (328)
..+.++.++.++++++++|.++++. ++.++.+|..+ ..+|+++|++++.+.+.|++++++||+.++++. | +
T Consensus 25 ~~~~a~~dg~~t~~~~~~y~~rA~gGliite~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~~avh~~G~~i~~QL~H~Gr 104 (358)
T 4a3u_A 25 TRGRATRDHVPTEIMAEYYAQRASAGLIISEATGISQEGLGWPYAPGIWSDAQVEAWLPITQAVHDAGGLIFAQLWHMGR 104 (358)
T ss_dssp CCCCSCTTCCCCHHHHHHHHHTTTSSSEEEEEEESSTTTCCSTTCCBCSSHHHHHHHHHHHHHHHHTTCCEEEEEECCGG
T ss_pred CCCccCCCCCCCHHHHHHHHHHcCCCEEEEeeeEECccccCCCCCcccCchHhHHHHHHHHHHHHhcCCceeeccccccc
Confidence 4445666788999999999988762 45566676666 688999999999999999999999999998832 2 1
Q ss_pred -------CCCcc---hhc---------------ccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEc---------
Q psy5880 98 -------PLPPI---LVK---------------IAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVN--------- 142 (328)
Q Consensus 98 -------~~~Pv---~vk---------------i~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN--------- 142 (328)
...|+ .+. .|..|+..+ ..+.+++|+++|+++.+ |||+||||
T Consensus 105 ~~~~~~~g~~~~apS~~~~~~~~~~~~~~~~~~~pr~mt~~e---I~~ii~~F~~AA~rA~~AGFDgVEIH~ahGYLl~Q 181 (358)
T 4a3u_A 105 MVPSNVSGMQPVAPSASQAPGLGHTYDGKKPYDVARALRLDE---IPRLLDDYEKAARHALKAGFDGVQIHAANGYLIDE 181 (358)
T ss_dssp GCCHHHHSSCCEESSCEECSSEEECSSSEEECCEEEECCGGG---HHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHH
T ss_pred cccccccccCCCCCcccccCCcccccCCCCCCccCccCCHHH---HHHHHHHHHHHHHHHHHcCCCeEeecccCCCcHHh
Confidence 01111 111 122344332 35789999999999988 89999998
Q ss_pred cCCCCCcchhhhhhh-------HHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC---------ChhhHHHHHHHhcccc
Q psy5880 143 VSSPNTANLRKLQAK-------DQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL---------SLDEKKDIADVVLDSK 206 (328)
Q Consensus 143 ~scPn~~g~~~~~~~-------~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~---------~~~~~~~~a~~l~~~~ 206 (328)
|.||.+ |.|+++|+ +++.|++++||+++. +-++++|+++.- +.+.+..+++.+ .+
T Consensus 182 FLSp~t-N~RtDeYGGS~eNR~Rf~~Eii~avr~~vg------~~~v~vRls~~~~~~g~~~~~~~~~~~~~~~~~--~~ 252 (358)
T 4a3u_A 182 FIRDST-NHRHDEYGGAVENRIRLLKDVTERVIATIG------KERTAVRLSPNGEIQGTVDSHPEQVFIPAAKML--SD 252 (358)
T ss_dssp HHSTTT-CCCCSTTSSSHHHHTHHHHHHHHHHHHHHC------GGGEEEEECCSSCBTTBCCSSTHHHHHHHHHHH--HH
T ss_pred ceeccc-CCeeCCCCCCHHHHHHHHHHHHHHHHHHcC------ccceEEEeccCcccCCCcccchHHHHHHHHHhh--hc
Confidence 567887 56665553 689999999999852 336899999741 223456778888 88
Q ss_pred CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCee
Q psy5880 207 CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLV 285 (328)
Q Consensus 207 ~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V 285 (328)
.|++.++++....... .++...+ .+.+.+|+.+. .||+ +||+.+++.+.++|+.| ||+|
T Consensus 253 ~~~~~i~~~~~~~~~~--------------~~~~~~~---~~a~~ik~~~~--~~v~-~~g~~~~~~ae~~l~~G~aD~V 312 (358)
T 4a3u_A 253 LDIAFLGMREGAVDGT--------------FGKTDQP---KLSPEIRKVFK--PPLV-LNQDYTFETAQAALDSGVADAI 312 (358)
T ss_dssp HTCSEEEEECCBTTCS--------------SSBCSSC---CCHHHHHHHCC--SCEE-EESSCCHHHHHHHHHHTSCSEE
T ss_pred cCccccccccccccCc--------------ccccccH---HHHHHHHHhcC--CcEE-EeCCCCHHHHHHHHHcCCceEe
Confidence 9999999886543200 0111111 23456777765 5655 67889999999999999 9999
Q ss_pred eehhHHhhcCchHHHHHHHHH
Q psy5880 286 QIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 286 ~vg~a~l~~gp~~~~~i~~~l 306 (328)
.+||+++. +|+|++|++++.
T Consensus 313 ~~gR~~la-dPdlp~k~~~g~ 332 (358)
T 4a3u_A 313 SFGRPFIG-NPDLPRRFFEKA 332 (358)
T ss_dssp EESHHHHH-CTTHHHHHHHTC
T ss_pred HhhHHHHh-ChhHHHHHHhCC
Confidence 99999996 599999998774
No 27
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=99.90 E-value=2.5e-23 Score=212.30 Aligned_cols=248 Identities=13% Similarity=0.061 Sum_probs=182.1
Q ss_pred HHHHHHHhHHHHHHHh----hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----CC-C----CC-
Q psy5880 36 RMRAWVLQFWLLGILK----FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA----LK-P----LP- 100 (328)
Q Consensus 36 ~v~~~~l~~y~~~~~~----l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~~-~----~~- 100 (328)
..++.++++|.++++. ++.++.++..+ ..+|+++|++++.+.+.|+++++++|+.+.++. |. . ..
T Consensus 34 ~~~~~~~~~y~~ra~gg~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~i~~Ql~h~Gr~~~~~~~ 113 (671)
T 1ps9_A 34 DGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQILHTGRYSYQPHL 113 (671)
T ss_dssp THHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHHHHHHHTTCCEEEEECCCGGGSBSTTC
T ss_pred CCcHHHHHHHHHHhcCCCCEEEecccccCccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeccCCcccCCCCC
Confidence 3467888999999972 44555555444 567999999999999999999999999987732 21 0 01
Q ss_pred --cchhc------ccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC---------CCCcchhhhh-------
Q psy5880 101 --PILVK------IAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS---------PNTANLRKLQ------- 155 (328)
Q Consensus 101 --Pv~vk------i~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc---------Pn~~g~~~~~------- 155 (328)
|..+. .|..|+..+ ..+.+++|+++|+++.+ ++|+||||.+| |++ +.|+++
T Consensus 114 ~~ps~~~~~~~~~~p~~~t~~e---i~~~i~~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~-n~r~d~yGgs~~~ 189 (671)
T 1ps9_A 114 VAPSALQAPINRFVPHELSHEE---ILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRT-NQRSDQWGGDYRN 189 (671)
T ss_dssp EESSSCCCTTCSSCCEECCHHH---HHHHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTT-CCCCSTTSSSHHH
T ss_pred cCCCCcccccCCCCCccCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCcc-CCCcCcCCCcHHH
Confidence 11111 222343322 24667899999998876 89999999775 776 333322
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC------CCChhhHHHHHHHhccccCCccEEEEecCCccchhhhcccc
Q psy5880 156 AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP------DLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY 229 (328)
Q Consensus 156 ~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~------~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~ 229 (328)
..+++.|++++||+++ + .++||++||++ +++.++..++++.+ +++|+|+|++++++... ..+..
T Consensus 190 r~r~~~eiv~avr~~v---G--~~~~v~vrls~~~~~~~g~~~~~~~~~a~~l--~~~g~d~i~v~~~~~~~---~~~~~ 259 (671)
T 1ps9_A 190 RMRFAVEVVRAVRERV---G--NDFIIIYRLSMLDLVEDGGTFAETVELAQAI--EAAGATIINTGIGWHEA---RIPTI 259 (671)
T ss_dssp HHHHHHHHHHHHHHHH---C--SSSEEEEEEEEECCSTTCCCHHHHHHHHHHH--HHHTCSEEEEEECBTTC---SSCSS
T ss_pred HHHHHHHHHHHHHHHc---C--CCceEEEEECccccCCCCCCHHHHHHHHHHH--HhcCCCEEEcCCCcccc---ccccc
Confidence 3478999999999884 3 58999999996 35667888999999 99999999998754321 00000
Q ss_pred ccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhhcCchHHHHHHHHHH
Q psy5880 230 KEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIKSELE 307 (328)
Q Consensus 230 ~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i~~~l~ 307 (328)
....++. ..+++++++++.++ +|||++|||++++++.++++.| ||+|++||+++. +|+|+.++.+++.
T Consensus 260 ----~~~~~~~---~~~~~~~~i~~~~~--iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~-~P~l~~k~~~g~~ 328 (671)
T 1ps9_A 260 ----ATPVPRG---AFSWVTRKLKGHVS--LPLVTTNRINDPQVADDILSRGDADMVSMARPFLA-DAELLSKAQSGRA 328 (671)
T ss_dssp ----STTSCTT---TTHHHHHHHTTSCS--SCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH-CTTHHHHHHTTCG
T ss_pred ----cccCCcc---hHHHHHHHHHHhcC--ceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHh-CcHHHHHHHcCCC
Confidence 0111111 23577888998886 9999999999999999999998 999999999986 5999999987754
No 28
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=99.89 E-value=1.2e-22 Score=209.00 Aligned_cols=244 Identities=12% Similarity=0.096 Sum_probs=173.5
Q ss_pred HHHhHHHHHHHh----hcCccceEEec-cCCCC-CcCccCCCchHHHHHHHHHHHHHhhhhc----CC---C------CC
Q psy5880 40 WVLQFWLLGILK----FGDVAHYFVVN-VSSPN-TANLRKLQAKDQLKHLLKTVVETRNQLA----LK---P------LP 100 (328)
Q Consensus 40 ~~l~~y~~~~~~----l~~~~~~v~~n-~sspN-~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~~---~------~~ 100 (328)
.++++|.++++. ++.++.++..+ ..+|+ ++|++++.+.+.|+++++++|+.+.++. |. . ..
T Consensus 40 ~~~~~y~~ra~gG~Gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~ 119 (729)
T 1o94_A 40 FQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEVHKYGALAGVELWYGGAHAPNMESRAT 119 (729)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHHHHHHTTTCEEEEEEECCGGGSCCTTTCCC
T ss_pred HHHHHHHHHhcCCCCEEEEcceEecCcccCCCCCCCccCChHHhHHHHHHHHHHHhCCCeEEEEecCCCccccccccCCC
Confidence 778899998873 34445444433 34454 5899999999999999999999987732 21 0 01
Q ss_pred c---chh-------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCC---------CCCcchhhhh-----
Q psy5880 101 P---ILV-------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSS---------PNTANLRKLQ----- 155 (328)
Q Consensus 101 P---v~v-------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~sc---------Pn~~g~~~~~----- 155 (328)
| .-+ ..|..|+..+ ..+.+++|+++|+++.+ ++|+||||.+| |.+ |.|+++
T Consensus 120 ~~~ps~~~~~~~~~~~p~~~t~~e---I~~~i~~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~-N~R~D~yGGs~ 195 (729)
T 1o94_A 120 PRGPSQYASEFETLSYCKEMDLSD---IAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYY-NKRTDKYGGSL 195 (729)
T ss_dssp CEESSCCBCSSSTTCBCEECCHHH---HHHHHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTT-CCCCSTTSSSH
T ss_pred CcCCCcccccccCCCCCCcCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCcc-CCCcCcCCCCH
Confidence 1 111 1123333322 24678999999999987 89999999888 876 334332
Q ss_pred --hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC-------CCC-hhhHHHHHHHhccccCCccEEEEecCCccchhhh
Q psy5880 156 --AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP-------DLS-LDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYL 225 (328)
Q Consensus 156 --~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~-------~~~-~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~ 225 (328)
..+++.|++++||+++ + .++||++||++ +++ .++..++++.+ ++ |+|++++++.........
T Consensus 196 enR~r~~~eiv~avr~~v---g--~~~pv~vrls~~~~~~~~G~~~~~~~~~~~~~l--~~-~~d~~~v~~g~~~~~~~~ 267 (729)
T 1o94_A 196 ENRARFWLETLEKVKHAV---G--SDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMA--DS-LVDMWDITIGDIAEWGED 267 (729)
T ss_dssp HHHTHHHHHHHHHHHHHH---T--TTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHH--GG-GCSEEEEEECCSTTGGGT
T ss_pred HHHhHHHHHHHHHHHHHh---C--CCceEEEEEccccCcCCCCCCchHHHHHHHHHH--Hh-hcCEEEEeeecccccccc
Confidence 2478999999999985 2 58999999986 344 46788899998 66 799999887542100000
Q ss_pred ccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhhcCchHHHHHHH
Q psy5880 226 DARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 226 ~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i~~ 304 (328)
. ....+.++. ..+++++++++.++ +|||++|||+|++++.++|+.| ||+|++||+++. +|+|++++.+
T Consensus 268 --~---~~~~~~~~~---~~~~~~~~i~~~~~--~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~-~P~~~~~~~~ 336 (729)
T 1o94_A 268 --A---GPSRFYQQG---HTIPWVKLVKQVSK--KPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIA-DPFLPQKVEQ 336 (729)
T ss_dssp --S---CCTTTCCTT---TTHHHHHHHHTTCS--SCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHH-CTTHHHHHHT
T ss_pred --c---CCccccCcc---ccHHHHHHHHHHCC--CEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhc-CchHHHHHHc
Confidence 0 000011111 23678889999987 9999999999999999999998 999999999986 5999999987
Q ss_pred HH
Q psy5880 305 EL 306 (328)
Q Consensus 305 ~l 306 (328)
+.
T Consensus 337 g~ 338 (729)
T 1o94_A 337 GR 338 (729)
T ss_dssp TC
T ss_pred CC
Confidence 63
No 29
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*
Probab=99.88 E-value=3.6e-23 Score=197.18 Aligned_cols=249 Identities=15% Similarity=0.121 Sum_probs=175.4
Q ss_pred cCChhhHHHHHHHhHHHHHHHh----hcCccceEEec-cCCCC-CcCccCCCchHHHHHHHHHHHHHhhhhc----C-C-
Q psy5880 30 MLSSFARMRAWVLQFWLLGILK----FGDVAHYFVVN-VSSPN-TANLRKLQAKDQLKHLLKTVVETRNQLA----L-K- 97 (328)
Q Consensus 30 ~~~~~~~v~~~~l~~y~~~~~~----l~~~~~~v~~n-~sspN-~~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~- 97 (328)
.+.+++.++++++++|.++++. |+.++.++..+ ..+|+ ++|++++.+.++|++++++||+.++++. | +
T Consensus 38 ~a~~~g~pt~~~~~yY~~rA~gG~GLIIte~~~V~~~g~~~~~~~~gi~~d~~i~~~k~l~~avH~~G~~i~~QL~H~Gr 117 (407)
T 3tjl_A 38 RALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGYEGAAPGIWTDKHAKAWKVITDKVHANGSFVSTQLIFLGR 117 (407)
T ss_dssp BSCTTSCCBHHHHHHHHHTCCSTTCEEEEEEEESSGGGCCCSSBCCBCSSHHHHHHHHHHHHHHHHTTCEEEEEEECCGG
T ss_pred ccCCCCCCCHHHHHHHHHHHcCCceEEEEcceEECCccCCCCCcCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeccCCC
Confidence 3445677899999999998872 45667777766 67899 9999999999999999999999998732 2 1
Q ss_pred -C---------CCcc---hh--------------cccCCcccccccchhHHHHH-HHHHHHHhcc-cccEEEEccCC---
Q psy5880 98 -P---------LPPI---LV--------------KIAPDLSLDEKKDIADVVLD-SVKGILKFGD-VAHYFVVNVSS--- 145 (328)
Q Consensus 98 -~---------~~Pv---~v--------------ki~~~l~~~~n~~~~~~i~~-~~~~a~~~~~-~~d~ieiN~sc--- 145 (328)
. ..|+ -+ ..|..|+..+ ..+.+++ |+++|+++.+ ++|+||||..|
T Consensus 118 ~~~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~pr~lt~~e---I~~ii~~~~~~aa~~a~~aGfdgveih~~~GYL 194 (407)
T 3tjl_A 118 VADPAVMKTRGLNPVSASATYESDAAKEAAEAVGNPVRALTTQE---VKDLVYEAYTNAAQKAMDAGFDYIELHAAHGYL 194 (407)
T ss_dssp GSCHHHHHHTTCCCEESSSCCSSHHHHHHHHHTTCCCEECCHHH---HHHHHHTHHHHHHHHHHHTTCSEEEEECCTTSH
T ss_pred ccchhhcccCCCcccCCCCcccccccccccccCCCCCCcCCHHH---HHHHHHHHHHHHHHHHHHhCCCeEEECCccchH
Confidence 0 1111 11 1122333322 2466888 9999998887 89999999888
Q ss_pred ------CCCcchhhhhh-------hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC---------C----hhhHHHHH
Q psy5880 146 ------PNTANLRKLQA-------KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL---------S----LDEKKDIA 199 (328)
Q Consensus 146 ------Pn~~g~~~~~~-------~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~---------~----~~~~~~~a 199 (328)
|.+ +.|++++ .+++.+++++|++++. .-||.+|+++.- + .++...++
T Consensus 195 l~QFLsp~~-N~r~D~YGGs~enr~r~~~ei~~av~~~~~------~~~v~~r~~~~~~~~g~~~~~d~~~~~~~~~~l~ 267 (407)
T 3tjl_A 195 LDQFLQPCT-NQRTDEYGGSIENRARLILELIDHLSTIVG------ADKIGIRISPWATFQNMKAHKDTVHPLTTFSYLV 267 (407)
T ss_dssp HHHHHSTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHC------GGGEEEEECTTCCGGGCCGGGSSSCHHHHHHHHH
T ss_pred HHHhcCccc-cccCCcCCCChhhChHHHHHHHHHHHHHhC------CCeEEEEECcccccCCCcccccccccHHHHHHHH
Confidence 876 3444333 3789999999999852 238999999832 1 23466777
Q ss_pred HHhcc-ccCC--ccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHH
Q psy5880 200 DVVLD-SKCK--VDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFE 276 (328)
Q Consensus 200 ~~l~~-~~~G--~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~ 276 (328)
+.|.+ .++| +++|+++....... ...++. . ....+..+++.++ +|||++|||++.+|+.+
T Consensus 268 ~~L~~~~~~G~~l~ylhv~~~~~~~~------------~~~~~~-~--~~~~~~~ir~~~~--~PvI~~Ggi~~~~dA~~ 330 (407)
T 3tjl_A 268 HELQQRADKGQGIAYISVVEPRVSGN------------VDVSEE-D--QAGDNEFVSKIWK--GVILKAGNYSYDAPEFK 330 (407)
T ss_dssp HHHHHHHHTTCCCSEEEEECTTEETT------------EECCGG-G--CCCCSHHHHHHCC--SEEEEESCGGGGTTTTH
T ss_pred HHHHhHhhcCCceeEEEEEccccCCC------------CcCCcc-c--hhHHHHHHHHHhC--CCEEecCCCCCHHHHHH
Confidence 77611 2358 99999984321100 000100 0 0122456677777 89999999999998888
Q ss_pred HHHh---c-cCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 277 KIKA---G-ASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 277 ~l~~---G-Ad~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+++. | ||+|++||+++. +|+|+.++..++
T Consensus 331 ~i~~~~~g~aDlVa~GR~~ia-NPdL~~ri~~g~ 363 (407)
T 3tjl_A 331 TLKEDIADKRTLVGFSRYFTS-NPNLVWKLRDGI 363 (407)
T ss_dssp HHHHHHTTSSEEEECSHHHHH-CTTHHHHHHHTC
T ss_pred HHHhhccCCCeEEEeChhhhh-CchHHHHHHcCC
Confidence 8876 6 999999999996 599999998764
No 30
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=99.88 E-value=3.9e-22 Score=204.05 Aligned_cols=240 Identities=15% Similarity=0.108 Sum_probs=171.9
Q ss_pred HhHHHHHHHh----hcCccceEEec-cCCCCC-cCccCCCchHHHHHHHHHHHHHhhhhc----C-CC--------CCc-
Q psy5880 42 LQFWLLGILK----FGDVAHYFVVN-VSSPNT-ANLRKLQAKDQLKHLLKTVVETRNQLA----L-KP--------LPP- 101 (328)
Q Consensus 42 l~~y~~~~~~----l~~~~~~v~~n-~sspN~-~gl~~~~~~~~L~~ll~~v~~~~~~~~----~-~~--------~~P- 101 (328)
..+|..+++. ++.+..++..+ ..+|++ +|++++.+.+.|+++++++|+.+.++. | +. ..|
T Consensus 47 ~~~~~~~a~gG~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~ 126 (690)
T 3k30_A 47 ASMRKIKAEGGWSAVCTEQVEIHATSDIAPFIELRIWDDQDLPALKRIADAIHEGGGLAGIELAHNGMNAPNQLSRETPL 126 (690)
T ss_dssp HHHHHHHHHTTCSEEEEEEEECSGGGCCTTSCCEECSSGGGHHHHHHHHHHHHHTTCEEEEEEECCGGGCCCTTTCCCCE
T ss_pred HHHHHHHhccCCEEEEecceEeccccccCCCcCCccCCHHHHHHHHHHHHHHHhcCCEEEEEccCCcccccccccCCCcc
Confidence 3455566663 44555555554 457776 599999999999999999999987732 2 10 011
Q ss_pred --chh---------cccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEcc----------CCCCCcchhhhhh---
Q psy5880 102 --ILV---------KIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNV----------SSPNTANLRKLQA--- 156 (328)
Q Consensus 102 --v~v---------ki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~----------scPn~~g~~~~~~--- 156 (328)
.-+ ..|..|+..+ ..+.+++|+++|+++.+ +||+||||. .||++ |.|++++
T Consensus 127 ~ps~~~~~~~~~~~~~p~~~t~~e---i~~~i~~f~~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~-N~R~D~yGGs 202 (690)
T 3k30_A 127 GPGHLPVAPDTIAPIQARAMTKQD---IDDLRRWHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRY-NQRTDEYGGS 202 (690)
T ss_dssp ESSSCBSCSSCCCSCBCEECCHHH---HHHHHHHHHHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTT-CCCCSTTSSS
T ss_pred CCCCCcccccccCCCCCCcCCHHH---HHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHHhCCCcc-CCCccccCCC
Confidence 111 1123343322 24678999999999987 899999964 45655 4455443
Q ss_pred ----hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC------CChhhHHHHHHHhccccCCccEEEEecCCccchhhhc
Q psy5880 157 ----KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD------LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLD 226 (328)
Q Consensus 157 ----~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~------~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~ 226 (328)
.+++.|++++|++++. .++||.+||++. ++.++..++++.+ ++ |+|+++++....... ..
T Consensus 203 ~enR~r~~~ei~~avr~~~g-----~~~~v~~r~s~~~~~~~g~~~~~~~~~~~~l--~~-~~d~~~v~~~~~~~~--~~ 272 (690)
T 3k30_A 203 LENRMRLLRELLEDTLDECA-----GRAAVACRITVEEEIDGGITREDIEGVLREL--GE-LPDLWDFAMGSWEGD--SV 272 (690)
T ss_dssp HHHHTHHHHHHHHHHHHHHT-----TSSEEEEEEECCCCSTTSCCHHHHHHHHHHH--TT-SSSEEEEECSCHHHH--TC
T ss_pred HHHHHHHHHHHHHHHHHHhC-----CCceEEEEECccccCCCCCCHHHHHHHHHHH--Hh-hcCEEEEeccccccc--CC
Confidence 3689999999999852 578999999874 4567889999999 77 899999987653210 00
Q ss_pred cccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhhcCchHHHHHHHH
Q psy5880 227 ARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 227 ~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+ ..+.++. ..+++++++++.++ +|||++|||++++++.++++.| ||+|++||+++. +|+|+++++++
T Consensus 273 ~------~~~~~~~---~~~~~~~~i~~~~~--~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~-~P~~~~~~~~g 340 (690)
T 3k30_A 273 T------SRFAPEG---RQEEFVAGLKKLTT--KPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIA-DPFLPNKIRDG 340 (690)
T ss_dssp C------TTTCCTT---TTHHHHTTSGGGCS--SCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHH-CTTHHHHHHTT
T ss_pred C------CccCCcc---ccHHHHHHHHHHcC--CeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHh-CccHHHHHHcC
Confidence 0 0011111 22567788888887 9999999999999999999988 999999999996 59999999876
Q ss_pred HH
Q psy5880 306 LE 307 (328)
Q Consensus 306 l~ 307 (328)
..
T Consensus 341 ~~ 342 (690)
T 3k30_A 341 RL 342 (690)
T ss_dssp CG
T ss_pred Cc
Confidence 43
No 31
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=99.87 E-value=4.3e-22 Score=187.82 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCc------chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCh--
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSL-- 192 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~-- 192 (328)
.++|+++++++.+ ++|+|+||++||+++ |.....+++++.+++++++++ .++||++|++.+++.
T Consensus 69 p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~-------v~~PV~vKiR~g~~~~~ 141 (350)
T 3b0p_A 69 PKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEA-------VRVPVTVKMRLGLEGKE 141 (350)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHH-------CSSCEEEEEESCBTTCC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHH-------hCCceEEEEecCcCccc
Confidence 4667777776655 599999999999963 223345678999999999987 679999999876543
Q ss_pred --hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCc---CchHHHHHHHHHHHHcCCCccEEEecC
Q psy5880 193 --DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEP---LRNKSTELISEMYKLTKGKLPIIGVGG 267 (328)
Q Consensus 193 --~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~---~~~~~l~~v~~i~~~~~~~ipvia~GG 267 (328)
++..++++.+ .++|+|+|++++++.. +|++|+. ..+..+++++++++.++ ++|||++||
T Consensus 142 ~~~~~~~~a~~l--~~aG~d~I~V~~r~~~-------------~g~~g~~~~~~~~~~~~~i~~ik~~~~-~iPVianGg 205 (350)
T 3b0p_A 142 TYRGLAQSVEAM--AEAGVKVFVVHARSAL-------------LALSTKANREIPPLRHDWVHRLKGDFP-QLTFVTNGG 205 (350)
T ss_dssp CHHHHHHHHHHH--HHTTCCEEEEECSCBC-----------------------CCCCCHHHHHHHHHHCT-TSEEEEESS
T ss_pred cHHHHHHHHHHH--HHcCCCEEEEecCchh-------------cccCcccccCCCcccHHHHHHHHHhCC-CCeEEEECC
Confidence 3678899999 9999999999987542 2344431 12334688999999982 399999999
Q ss_pred CCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 268 VFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 268 I~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
|+|++|+.++++ |||+||+||+++. +|+++.++.+.
T Consensus 206 I~s~eda~~~l~-GaD~V~iGRa~l~-~P~l~~~i~~~ 241 (350)
T 3b0p_A 206 IRSLEEALFHLK-RVDGVMLGRAVYE-DPFVLEEADRR 241 (350)
T ss_dssp CCSHHHHHHHHT-TSSEEEECHHHHH-CGGGGTTHHHH
T ss_pred cCCHHHHHHHHh-CCCEEEECHHHHh-CcHHHHHHHHH
Confidence 999999999998 9999999999984 69998887643
No 32
>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*
Probab=99.87 E-value=2.7e-22 Score=192.36 Aligned_cols=252 Identities=14% Similarity=0.142 Sum_probs=171.0
Q ss_pred CCCcCChhhHHH--HHHHhHHHHHHHh----hcCccceEEec-cCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc----
Q psy5880 27 THNMLSSFARMR--AWVLQFWLLGILK----FGDVAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA---- 95 (328)
Q Consensus 27 ~~~~~~~~~~v~--~~~l~~y~~~~~~----l~~~~~~v~~n-~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~---- 95 (328)
+.+.++.++.++ ++++++|.++++. |+.++.+|..+ ..+|+++|++++.+.+.|++++++||+.++++.
T Consensus 38 ~~~~a~~~g~v~~~d~~~~yy~~rA~GG~GLIite~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~davH~~G~~i~~QL~ 117 (400)
T 4gbu_A 38 TRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLA 117 (400)
T ss_dssp CCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEECSCEESSGGGCCCTTSCBSSSHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCcCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEcCeEECccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCceEEeee
Confidence 334455666664 6789999999873 56777787776 678999999999999999999999999998832
Q ss_pred C-C--C---------CCcch------------------hcccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEc--
Q psy5880 96 L-K--P---------LPPIL------------------VKIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVN-- 142 (328)
Q Consensus 96 ~-~--~---------~~Pv~------------------vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN-- 142 (328)
| + . ..|+. ...|..|+..+ ..+.+++|+++|+++.+ |||+||||
T Consensus 118 H~Gr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~pr~mt~~e---I~~ii~~F~~AA~rA~~AGFDgVEIH~A 194 (400)
T 4gbu_A 118 VLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDE---IKQYIKEYVQAAKNSIAAGADGVEIHSA 194 (400)
T ss_dssp CCGGGSCHHHHHHTTCCCEESCSSCCSCHHHHHHHHHTTCCCEECCHHH---HHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred ecCcccCccccccCCCcccCccccccCCCCcccccccCCCCCccCCHHH---HHHHHHHHHHHHHHHHhcCcCeeeeccc
Confidence 2 1 0 00100 01122344333 35678999999999998 89999998
Q ss_pred -------cCCCCCcchhhhhhh-------HHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC------C------hhhHH
Q psy5880 143 -------VSSPNTANLRKLQAK-------DQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL------S------LDEKK 196 (328)
Q Consensus 143 -------~scPn~~g~~~~~~~-------~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~------~------~~~~~ 196 (328)
|.+|.+ |.|+++|+ +++.||+++||+++. +-||++||++.- + .++..
T Consensus 195 hGYLl~QFLSp~t-N~RtDeYGGS~ENR~Rf~lEVi~aVr~~vg------~d~vgvRlS~~~~~~~~~~~~~~~~~~~~~ 267 (400)
T 4gbu_A 195 NGYLLNQFLDPHS-NTRTDEYGGSIENRARFTLEVVDALVEAIG------HEKVGLRLSPYGVFNSMSGGAETGIVAQYA 267 (400)
T ss_dssp TTSHHHHHHCTTT-CCCCSTTSSSHHHHTHHHHHHHHHHHHHHC------GGGEEEEECTTCCTTTCCGGGSTTHHHHHH
T ss_pred ccchHHheecCcC-CCCccccCCcHHHHHHHHHHHHHHHHHHcC------CCcEEEEeccccccCCCCccchhhhHHHHH
Confidence 567887 56766554 689999999999862 339999999741 1 12344
Q ss_pred HHHHHhccccCC-----ccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH
Q psy5880 197 DIADVVLDSKCK-----VDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG 271 (328)
Q Consensus 197 ~~a~~l~~~~~G-----~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~ 271 (328)
.+++.+ ...+ .++++++......+ ......+.+... ....+++.++ +|||++||+.+.
T Consensus 268 ~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--------~~~~ir~~~~--~pvi~~G~~~~~ 330 (400)
T 4gbu_A 268 YVAGEL--EKRAKAGKRLAFVHLVEPRVTNP-----FLTEGEGEYEGG--------SNDFVYSIWK--GPVIRAGNFALH 330 (400)
T ss_dssp HHHHHH--HHHHHTTCCCSEEEEECTTCSST-----TSCTTTTCCCSC--------CSTHHHHHCC--SCEEEESSCTTC
T ss_pred HHHHHH--HHhhccCccccceeeecccCCCc-----ccccccchhhhH--------HHHHHHHHhC--CCEEEeCCCCCh
Confidence 455555 3332 34555543221100 000011112111 1234566776 999999999988
Q ss_pred HHHHHHHHhc-cCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 272 KDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 272 ~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
.++.+.+..| ||+|.+||+++. +|+|++|++++.
T Consensus 331 ~~~~~~~~~~~aDlV~~gR~~ia-dPdl~~k~~~G~ 365 (400)
T 4gbu_A 331 PEVVREEVKDKRTLIGYGRFFIS-NPDLVDRLEKGL 365 (400)
T ss_dssp HHHHHHHTTSTTEEEECCHHHHH-CTTHHHHHHHTC
T ss_pred HHHHHHHHcCCCeEhHHHHHHHH-CcHHHHHHHcCC
Confidence 8887777654 999999999996 599999998874
No 33
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=99.87 E-value=1e-21 Score=183.11 Aligned_cols=153 Identities=15% Similarity=0.210 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCc------chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEK 195 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~ 195 (328)
.++|+++++++.+.+|+|+||++||++. |.....+++++.+++++|++. .++||++|++++++.++.
T Consensus 70 ~~~~~~aa~~a~~~~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~-------~~~pv~vKir~G~~~~~~ 142 (318)
T 1vhn_A 70 PNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKS-------VSGKFSVKTRLGWEKNEV 142 (318)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHH-------CSSEEEEEEESCSSSCCH
T ss_pred HHHHHHHHHHHHHhCCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHh-------hCCCEEEEecCCCChHHH
Confidence 5788888888876699999999999963 222334678999999999987 679999999998876666
Q ss_pred HHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHH
Q psy5880 196 KDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAF 275 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~ 275 (328)
.++++.+ .++|+|+|++++++.. +++++++.+ +.++++++ ++|||++|||+|++|+.
T Consensus 143 ~~~a~~l--~~~G~d~i~v~g~~~~-------------~~~~~~~~~----~~i~~i~~----~ipVi~~GgI~s~~da~ 199 (318)
T 1vhn_A 143 EEIYRIL--VEEGVDEVFIHTRTVV-------------QSFTGRAEW----KALSVLEK----RIPTFVSGDIFTPEDAK 199 (318)
T ss_dssp HHHHHHH--HHTTCCEEEEESSCTT-------------TTTSSCCCG----GGGGGSCC----SSCEEEESSCCSHHHHH
T ss_pred HHHHHHH--HHhCCCEEEEcCCCcc-------------ccCCCCcCH----HHHHHHHc----CCeEEEECCcCCHHHHH
Confidence 6999999 9999999999986532 335555443 44555555 49999999999999999
Q ss_pred HHHH-hccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 276 EKIK-AGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 276 ~~l~-~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
++++ .|||+|++||+++. +|+++.++.+.
T Consensus 200 ~~l~~~gad~V~iGR~~l~-~P~l~~~~~~~ 229 (318)
T 1vhn_A 200 RALEESGCDGLLVARGAIG-RPWIFKQIKDF 229 (318)
T ss_dssp HHHHHHCCSEEEESGGGTT-CTTHHHHHHHH
T ss_pred HHHHcCCCCEEEECHHHHh-CcchHHHHHHH
Confidence 9998 79999999999985 69999888763
No 34
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=99.84 E-value=7e-20 Score=172.79 Aligned_cols=182 Identities=14% Similarity=0.133 Sum_probs=125.9
Q ss_pred HHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHH--HHHHHHHHHHHHHhhcCCCCCCEEEEe-CCCCChhhHHHHHH
Q psy5880 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQ--LKHLLKTVVETRNQLAVKPLPPILVKI-APDLSLDEKKDIAD 200 (328)
Q Consensus 124 ~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~--~~~i~~~v~~~~~~~~~~~~~Pv~vKl-~~~~~~~~~~~~a~ 200 (328)
.+.+.++.++ +|+|++|++||+.... ...++.+ +.++++++++. .++||++|+ .++++. +.++
T Consensus 131 ~~~~~~~~~g--ad~i~i~~~~~~~~~~-~~~~~~~~~~~~~i~~vr~~-------~~~Pv~vK~~~~~~~~----~~a~ 196 (349)
T 1p0k_A 131 QAKEAVEMIG--ANALQIHLNVIQEIVM-PEGDRSFSGALKRIEQICSR-------VSVPVIVKEVGFGMSK----ASAG 196 (349)
T ss_dssp HHHHHHHHTT--CSEEEEEECTTTTC---------CTTHHHHHHHHHHH-------CSSCEEEEEESSCCCH----HHHH
T ss_pred HHHHHHHhcC--CCeEEecccchhhhcC-CCCCcchHHHHHHHHHHHHH-------cCCCEEEEecCCCCCH----HHHH
Confidence 3445566666 9999999999985311 1112222 66788888776 689999998 455653 4567
Q ss_pred HhccccCCccEEEEecCCccc---hhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDR---YEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~---~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~ 277 (328)
.+ .++|+|+|+++|+.... ++..............|.+ ..+.++++++.+ .++|||++|||+|++|+.++
T Consensus 197 ~a--~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~----~~~~l~~v~~~~-~~ipvia~GGI~~~~d~~k~ 269 (349)
T 1p0k_A 197 KL--YEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGIS----TAASLAEIRSEF-PASTMIASGGLQDALDVAKA 269 (349)
T ss_dssp HH--HHHTCSEEEEEC---------------CCGGGGTTCSCC----HHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHH
T ss_pred HH--HHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCcc----HHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHH
Confidence 78 89999999998763210 0000000000000011221 345677777776 35999999999999999999
Q ss_pred HHhccCeeeehhHHhhc----Cc----hHHHHHHHHHHHHHHHhCCCCHHHHhcccc
Q psy5880 278 IKAGASLVQIYTSFVYH----GP----PLVTRIKSELEELLQKEGYNSVSQAVGAAH 326 (328)
Q Consensus 278 l~~GAd~V~vg~a~l~~----gp----~~~~~i~~~l~~~m~~~g~~si~e~~G~~~ 326 (328)
+.+|||+|++||++++. |+ .+++.+.++++.+|...|+++++|+++...
T Consensus 270 l~~GAd~V~iG~~~l~~~~~~g~~~~~~~~~~~~~~l~~~m~~~G~~~i~el~~~~~ 326 (349)
T 1p0k_A 270 IALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPL 326 (349)
T ss_dssp HHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBHHHHTTCCE
T ss_pred HHcCCCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhhCCe
Confidence 99999999999999875 56 678999999999999999999999998653
No 35
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=99.76 E-value=1e-17 Score=158.74 Aligned_cols=173 Identities=17% Similarity=0.206 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCc-----------------ch-----------hh---h--hhhHHHHHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTA-----------------NL-----------RK---L--QAKDQLKHLLKT 166 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~-----------------g~-----------~~---~--~~~~~~~~i~~~ 166 (328)
+...+.++.++.++ ++++.+|+.||... +. .. . .++.+..+.+++
T Consensus 146 ~~~~~~~~ra~~aG--~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~~i~~ 223 (368)
T 2nli_A 146 QQNRDILDEAKSDG--ATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKISPRDIEE 223 (368)
T ss_dssp HHHHHHHHHHHHTT--CSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTTBCSBCCHHHHHH
T ss_pred HHHHHHHHHHHHCC--CCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhccCchhhHHHHHH
Confidence 45566666666665 99999999998621 00 00 0 023445667888
Q ss_pred HHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHH
Q psy5880 167 VVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKST 246 (328)
Q Consensus 167 v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l 246 (328)
|++. .++||++|.. .+ .+.++.+ .++|+|+|+++|+... ....|+ ..+
T Consensus 224 lr~~-------~~~PvivK~v--~~----~e~a~~a--~~~Gad~I~vs~~ggr-------------~~~~g~----~~~ 271 (368)
T 2nli_A 224 IAGH-------SGLPVFVKGI--QH----PEDADMA--IKRGASGIWVSNHGAR-------------QLYEAP----GSF 271 (368)
T ss_dssp HHHH-------SSSCEEEEEE--CS----HHHHHHH--HHTTCSEEEECCGGGT-------------SCSSCC----CHH
T ss_pred HHHH-------cCCCEEEEcC--CC----HHHHHHH--HHcCCCEEEEcCCCcC-------------CCCCCC----ChH
Confidence 8876 6899999964 22 3457888 8999999999886421 112232 346
Q ss_pred HHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc----Cc----hHHHHHHHHHHHHHHHhCCCCH
Q psy5880 247 ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH----GP----PLVTRIKSELEELLQKEGYNSV 318 (328)
Q Consensus 247 ~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~----gp----~~~~~i~~~l~~~m~~~g~~si 318 (328)
+.+.++++.+++++|||++|||++++|+.++|.+|||+|++||++++. |. .+++.+.++++.+|...|++++
T Consensus 272 ~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i 351 (368)
T 2nli_A 272 DTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNV 351 (368)
T ss_dssp HHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCcCH
Confidence 788888888865699999999999999999999999999999999864 22 5788899999999999999999
Q ss_pred HHHhcccc
Q psy5880 319 SQAVGAAH 326 (328)
Q Consensus 319 ~e~~G~~~ 326 (328)
.|+++...
T Consensus 352 ~~l~~~~l 359 (368)
T 2nli_A 352 EDLKGLDL 359 (368)
T ss_dssp HHHHTCCE
T ss_pred HHhccccE
Confidence 99998653
No 36
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=99.75 E-value=1.9e-17 Score=154.89 Aligned_cols=172 Identities=22% Similarity=0.289 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhh--h-------------------------------hhhHHHHHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRK--L-------------------------------QAKDQLKHLLK 165 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~--~-------------------------------~~~~~~~~i~~ 165 (328)
.+...++++-|+.++ +.++.+.+-.|.. |.|. . .++...-+.++
T Consensus 134 ~~~~~~l~~ra~~aG--~~alvlTvD~p~~-g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~ 210 (352)
T 3sgz_A 134 WDFNKQMVQRAEALG--FKALVITIDTPVL-GNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWNDLS 210 (352)
T ss_dssp HHHHHHHHHHHHHTT--CCCEEEECSCSSC-CCCHHHHHHHHHSCHHHHTTCC---------------CCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEEEeCCCCC-CcchhhhhcCCCCCcccchhhhcccccccccchhhhhccCCCCCHHHHH
Confidence 466778888888887 8888887777664 1110 0 01223346777
Q ss_pred HHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHH
Q psy5880 166 TVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKS 245 (328)
Q Consensus 166 ~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~ 245 (328)
++++. .++||++|... + .+.++.+ .++|+|+|+++|+... . +.+ .+..
T Consensus 211 ~lr~~-------~~~PvivK~v~--~----~e~A~~a--~~~GaD~I~vsn~GG~-------------~-~d~---~~~~ 258 (352)
T 3sgz_A 211 LLQSI-------TRLPIILKGIL--T----KEDAELA--MKHNVQGIVVSNHGGR-------------Q-LDE---VSAS 258 (352)
T ss_dssp HHHHH-------CCSCEEEEEEC--S----HHHHHHH--HHTTCSEEEECCGGGT-------------S-SCS---SCCH
T ss_pred HHHHh-------cCCCEEEEecC--c----HHHHHHH--HHcCCCEEEEeCCCCC-------------c-cCC---CccH
Confidence 87776 78999999874 2 3457788 8999999999986421 0 111 1245
Q ss_pred HHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh----cCc----hHHHHHHHHHHHHHHHhCCCC
Q psy5880 246 TELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY----HGP----PLVTRIKSELEELLQKEGYNS 317 (328)
Q Consensus 246 l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~----~gp----~~~~~i~~~l~~~m~~~g~~s 317 (328)
++.+.++++.+.+++|||++|||++++|+.++|.+||++|++||++++ .|+ .+++.+.++++.+|...|+++
T Consensus 259 ~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~~el~~~m~~~G~~~ 338 (352)
T 3sgz_A 259 IDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQS 338 (352)
T ss_dssp HHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSB
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 788888888886679999999999999999999999999999999986 244 378899999999999999999
Q ss_pred HHHHhccc
Q psy5880 318 VSQAVGAA 325 (328)
Q Consensus 318 i~e~~G~~ 325 (328)
++|+++..
T Consensus 339 i~el~~~~ 346 (352)
T 3sgz_A 339 VAEISPDL 346 (352)
T ss_dssp GGGCCGGG
T ss_pred HHHHhhhc
Confidence 99998754
No 37
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=99.75 E-value=2.4e-17 Score=162.17 Aligned_cols=173 Identities=20% Similarity=0.265 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcc----hhh--------------------------h---hhhHHHHHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTAN----LRK--------------------------L---QAKDQLKHLLK 165 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g----~~~--------------------------~---~~~~~~~~i~~ 165 (328)
.+...++++.++.++ +++|+|++.||.... .+. . .++.+..+.++
T Consensus 259 ~~~~~~~~~rae~aG--~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~i~ 336 (511)
T 1kbi_A 259 RKITDDLVKNVEKLG--VKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIE 336 (511)
T ss_dssp HHHHHHHHHHHHHHT--CSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChHhHHHHHH
Confidence 456777777777777 999999999998210 000 0 12334456788
Q ss_pred HHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHH
Q psy5880 166 TVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKS 245 (328)
Q Consensus 166 ~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~ 245 (328)
+|++. .++||++|.... .+.++.+ .++|+|+|+++|+.... ...++ ..
T Consensus 337 ~lr~~-------~~~PvivKgv~~------~e~A~~a--~~aGad~I~vs~hgG~~-------------~d~~~----~~ 384 (511)
T 1kbi_A 337 ELKKK-------TKLPIVIKGVQR------TEDVIKA--AEIGVSGVVLSNHGGRQ-------------LDFSR----AP 384 (511)
T ss_dssp HHHHH-------CSSCEEEEEECS------HHHHHHH--HHTTCSEEEECCTTTTS-------------STTCC----CH
T ss_pred HHHHH-------hCCcEEEEeCCC------HHHHHHH--HHcCCCEEEEcCCCCcc-------------CCCCC----ch
Confidence 88876 689999996542 3457888 89999999998853210 01122 23
Q ss_pred HHHHHHHHHHc-----CCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCc---------hHHHHHHHHHHHHHH
Q psy5880 246 TELISEMYKLT-----KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGP---------PLVTRIKSELEELLQ 311 (328)
Q Consensus 246 l~~v~~i~~~~-----~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp---------~~~~~i~~~l~~~m~ 311 (328)
++.+.++++.+ ..++|||++|||++++|+.++|.+|||+|+|||++++. . .+++.+.++++.+|.
T Consensus 385 ~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~~l~~-~~~~G~~gv~~~l~~l~~el~~~m~ 463 (511)
T 1kbi_A 385 IEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYA-NSCYGRNGVEKAIEILRDEIEMSMR 463 (511)
T ss_dssp HHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHH
Confidence 56777777776 23699999999999999999999999999999999863 3 468889999999999
Q ss_pred HhCCCCHHHHhcccc
Q psy5880 312 KEGYNSVSQAVGAAH 326 (328)
Q Consensus 312 ~~g~~si~e~~G~~~ 326 (328)
..|++++.||++...
T Consensus 464 ~~G~~~i~el~~~~l 478 (511)
T 1kbi_A 464 LLGVTSIAELKPDLL 478 (511)
T ss_dssp HHTCCBGGGCCGGGE
T ss_pred HhCCCcHHHHhHHHh
Confidence 999999999998654
No 38
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=99.74 E-value=1.7e-17 Score=155.41 Aligned_cols=183 Identities=19% Similarity=0.222 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhh--HHHHHHHHHHHHHHHhhcCCCCCCEEEE-eCCCCChhhHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAK--DQLKHLLKTVVETRNQLAVKPLPPILVK-IAPDLSLDEKKDI 198 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~--~~~~~i~~~v~~~~~~~~~~~~~Pv~vK-l~~~~~~~~~~~~ 198 (328)
...+.++++.++ ++++++|+.+.+. .. ...+. ..+.+++++|++ .++||++| ++.+++. +.
T Consensus 134 ~~~~~~a~~~~~--~~a~~i~~n~~~~-~~-~~~~~~~~~~~~~i~~vr~--------~~~Pv~vK~v~~g~~~----e~ 197 (332)
T 1vcf_A 134 RDDLLRLVEMLE--ADALAFHVNPLQE-AV-QRGDTDFRGLVERLAELLP--------LPFPVMVKEVGHGLSR----EA 197 (332)
T ss_dssp HHHHHHHHHHHT--CSEEEEECCHHHH-HH-TTSCCCCTTHHHHHHHHCS--------CSSCEEEECSSSCCCH----HH
T ss_pred hHHHHHHHhhcC--CCceeeccchHHH-Hh-cCCCccHHHHHHHHHHHHc--------CCCCEEEEecCCCCCH----HH
Confidence 344555555555 7888887754211 00 00011 124555665553 36899999 6666664 34
Q ss_pred HHHhccccCCccEEEEecCCcc---chhhhccccccccC--CCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVD---RYEYLDARYKEETG--GLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~---~~~~~~~~~~~~~g--g~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.+ .++|+|+|+++|+... .++..+.......+ ...|. ..++.+.++++.++ ++|||++|||++++|
T Consensus 198 a~~~--~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~----~~~~~l~~v~~~~~-~ipvia~GGI~~~~d 270 (332)
T 1vcf_A 198 ALAL--RDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGI----PTARAILEVREVLP-HLPLVASGGVYTGTD 270 (332)
T ss_dssp HHHH--TTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSC----BHHHHHHHHHHHCS-SSCEEEESSCCSHHH
T ss_pred HHHH--HHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccc----cHHHHHHHHHHhcC-CCeEEEECCCCCHHH
Confidence 6788 8999999999875321 11100000000000 11222 23577888888884 499999999999999
Q ss_pred HHHHHHhccCeeeehhHHhh---cCc----hHHHHHHHHHHHHHHHhCCCCHHHHhccccc
Q psy5880 274 AFEKIKAGASLVQIYTSFVY---HGP----PLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~---~gp----~~~~~i~~~l~~~m~~~g~~si~e~~G~~~~ 327 (328)
+.++|.+|||+|++||++++ .|+ .+++.+.++++.+|...|+++++|+++...|
T Consensus 271 ~~kal~~GAd~V~igr~~l~~~~~G~~gv~~~~~~l~~el~~~m~~~G~~~i~el~~~~~~ 331 (332)
T 1vcf_A 271 GAKALALGADLLAVARPLLRPALEGAERVAAWIGDYLEELRTALFAIGARNPKEARGRVER 331 (332)
T ss_dssp HHHHHHHTCSEEEECGGGHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGTTCEEE
T ss_pred HHHHHHhCCChHhhhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhhhhcc
Confidence 99999999999999999984 445 6789999999999999999999999997654
No 39
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=99.74 E-value=5.4e-17 Score=154.02 Aligned_cols=173 Identities=21% Similarity=0.256 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcc-------------hh---h-hh----------------------hhHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTAN-------------LR---K-LQ----------------------AKDQL 160 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g-------------~~---~-~~----------------------~~~~~ 160 (328)
+...+.++.++.++ ++++++|+.||.... .. . .+ ++.+.
T Consensus 136 ~~~~~~~~~a~~~G--~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~ 213 (370)
T 1gox_A 136 NVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLS 213 (370)
T ss_dssp HHHHHHHHHHHHTT--CCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCC
T ss_pred hHHHHHHHHHHHCC--CCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccch
Confidence 44566666666665 999999999986410 00 0 00 12223
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCc
Q psy5880 161 KHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEP 240 (328)
Q Consensus 161 ~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~ 240 (328)
.+.++++++. .++|+++|... + .+.++.+ .++|+|+|+++|+... . ...+
T Consensus 214 ~~~i~~l~~~-------~~~pv~vK~~~--~----~e~a~~a--~~~Gad~I~vs~~ggr-~------------~~~~-- 263 (370)
T 1gox_A 214 WKDVAWLQTI-------TSLPILVKGVI--T----AEDARLA--VQHGAAGIIVSNHGAR-Q------------LDYV-- 263 (370)
T ss_dssp HHHHHHHHHH-------CCSCEEEECCC--S----HHHHHHH--HHTTCSEEEECCGGGT-S------------STTC--
T ss_pred HHHHHHHHHH-------hCCCEEEEecC--C----HHHHHHH--HHcCCCEEEECCCCCc-c------------CCCc--
Confidence 3556666665 68999999874 2 2456778 8999999999875311 0 0111
Q ss_pred CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc----Cc----hHHHHHHHHHHHHHHH
Q psy5880 241 LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH----GP----PLVTRIKSELEELLQK 312 (328)
Q Consensus 241 ~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~----gp----~~~~~i~~~l~~~m~~ 312 (328)
+..++.+.++++.+++++|||++|||++++|+.+++.+|||+|++||++++. |+ .+++.+.++++.+|..
T Consensus 264 --~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~~~~~G~~gv~~~~~~l~~el~~~m~~ 341 (370)
T 1gox_A 264 --PATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMAL 341 (370)
T ss_dssp --CCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 2356888889888865699999999999999999999999999999999863 33 5788999999999999
Q ss_pred hCCCCHHHHhcccc
Q psy5880 313 EGYNSVSQAVGAAH 326 (328)
Q Consensus 313 ~g~~si~e~~G~~~ 326 (328)
.|+++++|+++...
T Consensus 342 ~G~~~i~el~~~~l 355 (370)
T 1gox_A 342 SGCRSLKEISRSHI 355 (370)
T ss_dssp HTCSBTTTCCGGGE
T ss_pred hCCCCHHHhhhcce
Confidence 99999999998654
No 40
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=99.73 E-value=3.3e-17 Score=154.88 Aligned_cols=182 Identities=17% Similarity=0.171 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCC----CcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe-CCCCChhhH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPN----TANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI-APDLSLDEK 195 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn----~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl-~~~~~~~~~ 195 (328)
..+.+.++++.+. +|+++||+...+ ..+.+... ....+.++++++. .++||++|. ..+++
T Consensus 136 ~~~~~~~av~~~~--a~al~Ihln~~~~~~~p~g~~~~~--~~~~~~i~~i~~~-------~~vPVivK~vG~g~s---- 200 (368)
T 3vkj_A 136 GLKEFQDAIQMIE--ADAIAVHLNPAQEVFQPEGEPEYQ--IYALEKLRDISKE-------LSVPIIVKESGNGIS---- 200 (368)
T ss_dssp CHHHHHHHHHHTT--CSEEEEECCHHHHHHSSSCCCBCB--THHHHHHHHHHTT-------CSSCEEEECSSSCCC----
T ss_pred CHHHHHHHHHHhc--CCCeEEEecchhhhhCCCCCchhh--HHHHHHHHHHHHH-------cCCCEEEEeCCCCCC----
Confidence 3556666677665 777777754101 00111110 1255666666654 689999995 34455
Q ss_pred HHHHHHhccccCCccEEEEecCCcc---chhhhcc--------ccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEE
Q psy5880 196 KDIADVVLDSKCKVDGLIVSNTTVD---RYEYLDA--------RYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIG 264 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~n~~~~---~~~~~~~--------~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia 264 (328)
.+.++.+ .++|+|+|+++|+... .++..+. .......+++.| ....+.++++.++ ++|||+
T Consensus 201 ~~~A~~l--~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~p-----t~~~l~~v~~~~~-~ipvia 272 (368)
T 3vkj_A 201 METAKLL--YSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVP-----TAASIMEVRYSVP-DSFLVG 272 (368)
T ss_dssp HHHHHHH--HHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCB-----HHHHHHHHHHHST-TCEEEE
T ss_pred HHHHHHH--HhCCCCEEEEeCCCCCcccchhhhhcccccccchhhcccccccccc-----HHHHHHHHHHHcC-CCcEEE
Confidence 3557888 8999999999876431 0111110 011111222222 2345667777775 599999
Q ss_pred ecCCCCHHHHHHHHHhccCeeeehhHHhh---cCch----HHHHHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 265 VGGVFSGKDAFEKIKAGASLVQIYTSFVY---HGPP----LVTRIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 265 ~GGI~s~~da~~~l~~GAd~V~vg~a~l~---~gp~----~~~~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
+|||+++.|+.+++.+|||+|++||++++ .|+. +++.+.++++.+|...|+++++||++..
T Consensus 273 ~GGI~~~~d~~kal~lGA~~v~ig~~~l~~~~~G~~~v~~~l~~l~~eL~~~m~~~G~~~i~el~~~~ 340 (368)
T 3vkj_A 273 SGGIRSGLDAAKAIALGADIAGMALPVLKSAIEGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTS 340 (368)
T ss_dssp ESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCC
T ss_pred ECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHHhccCC
Confidence 99999999999999999999999999985 5774 6888999999999999999999998753
No 41
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=99.73 E-value=3.8e-17 Score=155.85 Aligned_cols=173 Identities=21% Similarity=0.234 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchh-----------------h-----------------------hh---
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLR-----------------K-----------------------LQ--- 155 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~-----------------~-----------------------~~--- 155 (328)
.+...+.++.++.++ ++++.+|+.||.. +.| . ..
T Consensus 159 ~~~~~~~~~ra~~~G--~~al~itvd~p~~-g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~ 235 (392)
T 2nzl_A 159 REVTKKLVRQAEKMG--YKAIFVTVDTPYL-GNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAI 235 (392)
T ss_dssp HHHHHHHHHHHHHTT--CCCEEEECSCSSC-CCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHB
T ss_pred HHHHHHHHHHHHHCC--CCEEEEeCCCCCc-cchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcC
Confidence 345566666666665 9999999999874 100 0 00
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCC
Q psy5880 156 AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG 235 (328)
Q Consensus 156 ~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg 235 (328)
++....+.++++++. .++||++|... + .+.++.+ .++|+|+|+++|+... ..
T Consensus 236 d~~~~~~~i~~lr~~-------~~~PvivKgv~--~----~e~A~~a--~~aGad~I~vs~~ggr-------------~~ 287 (392)
T 2nzl_A 236 DPSISWEDIKWLRRL-------TSLPIVAKGIL--R----GDDAREA--VKHGLNGILVSNHGAR-------------QL 287 (392)
T ss_dssp CTTCCHHHHHHHC---------CCSCEEEEEEC--C----HHHHHHH--HHTTCCEEEECCGGGT-------------SS
T ss_pred ChHHHHHHHHHHHHh-------hCCCEEEEecC--C----HHHHHHH--HHcCCCEEEeCCCCCC-------------cC
Confidence 223344556666654 68999999652 3 3457888 8999999999886431 01
Q ss_pred CCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc----Cc----hHHHHHHHHHH
Q psy5880 236 LSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH----GP----PLVTRIKSELE 307 (328)
Q Consensus 236 ~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~----gp----~~~~~i~~~l~ 307 (328)
..|+ ..++.+.++++.+++++|||++|||++++|+.++|.+|||+|++||++++. |. .+++.+.++++
T Consensus 288 ~~g~----~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~~~~~~g~~gv~~~l~~l~~el~ 363 (392)
T 2nzl_A 288 DGVP----ATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFR 363 (392)
T ss_dssp TTCC----CHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCc----ChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 1222 346778888888866799999999999999999999999999999999863 11 46888999999
Q ss_pred HHHHHhCCCCHHHHhcccc
Q psy5880 308 ELLQKEGYNSVSQAVGAAH 326 (328)
Q Consensus 308 ~~m~~~g~~si~e~~G~~~ 326 (328)
.+|...|+++++|+++...
T Consensus 364 ~~m~~~G~~~i~el~~~~l 382 (392)
T 2nzl_A 364 LAMALSGCQNVKVIDKTLV 382 (392)
T ss_dssp HHHHHHTCSBGGGCCGGGB
T ss_pred HHHHHhCCCcHHHHhhhhh
Confidence 9999999999999998654
No 42
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=99.73 E-value=3.3e-17 Score=154.38 Aligned_cols=180 Identities=12% Similarity=0.146 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCC----cchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC-CCChhhHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNT----ANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP-DLSLDEKK 196 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~----~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~-~~~~~~~~ 196 (328)
.+++.+.++.++ +|++++|+...+. ++.+ +...+.+.++++++. .++||++|... +.+ .
T Consensus 157 ~e~~~~~ve~~~--adal~ihln~~qe~~~p~Gd~---~~~~~~~~I~~l~~~-------~~~PVivK~vg~g~s----~ 220 (365)
T 3sr7_A 157 YQAGLQAVRDLQ--PLFLQVHINLMQELLMPEGER---EFRSWKKHLSDYAKK-------LQLPFILKEVGFGMD----V 220 (365)
T ss_dssp HHHHHHHHHHHC--CSCEEEEECHHHHHTSSSSCC---CCHHHHHHHHHHHHH-------CCSCEEEEECSSCCC----H
T ss_pred HHHHHHHHHhcC--CCEEEEeccccccccCCCCCC---cHHHHHHHHHHHHHh-------hCCCEEEEECCCCCC----H
Confidence 456777777777 9999998874321 1111 122355777777776 78999999643 234 3
Q ss_pred HHHHHhccccCCccEEEEecCCccc---hhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDR---YEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~---~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+.++.+ .++|+|+|+++|+.... .+..+... ..++.+.. .| ....+..++. +..++|||++|||+++.|
T Consensus 221 e~A~~l--~~aGad~I~V~g~GGt~~a~ie~~r~~~---~~~~~~~g-~p-t~~~L~~v~~-~~~~ipvia~GGI~~g~D 292 (365)
T 3sr7_A 221 KTIQTA--IDLGVKTVDISGRGGTSFAYIENRRGGN---RSYLNQWG-QT-TAQVLLNAQP-LMDKVEILASGGIRHPLD 292 (365)
T ss_dssp HHHHHH--HHHTCCEEECCCBC-----------------CGGGTTCS-CB-HHHHHHHHGG-GTTTSEEEECSSCCSHHH
T ss_pred HHHHHH--HHcCCCEEEEeCCCCcccchhhcccccc---cccccccc-cc-HHHHHHHHHH-hcCCCeEEEeCCCCCHHH
Confidence 557888 89999999998873210 11111000 00010000 11 2234444433 334699999999999999
Q ss_pred HHHHHHhccCeeeehhHHhh----cCc----hHHHHHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 274 AFEKIKAGASLVQIYTSFVY----HGP----PLVTRIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~----~gp----~~~~~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
+.++|.+|||+|++||++++ .|+ .+++.+.++|+.+|...|+++++||++..
T Consensus 293 v~KaLalGAdaV~ig~~~l~a~~~~G~~~v~~~l~~l~~eL~~~m~~~G~~si~eL~~~~ 352 (365)
T 3sr7_A 293 IIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRLIMCALNCQTIAELRNVD 352 (365)
T ss_dssp HHHHHHHTCSEEEESHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTTCSSTGGGGGCC
T ss_pred HHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCcCHHHhccCC
Confidence 99999999999999999985 453 47899999999999999999999999754
No 43
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=99.60 E-value=1.4e-14 Score=137.87 Aligned_cols=135 Identities=20% Similarity=0.173 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCC
Q psy5880 157 KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGL 236 (328)
Q Consensus 157 ~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~ 236 (328)
+....++++++++. .++||++|.. .+ .+.++.+ .++|+|+|+++|+... ...
T Consensus 210 p~~~~~~i~~i~~~-------~~~Pv~vkgv--~t----~e~a~~a--~~aGad~I~vs~~gg~-------------~~d 261 (380)
T 1p4c_A 210 ASFNWEALRWLRDL-------WPHKLLVKGL--LS----AEDADRC--IAEGADGVILSNHGGR-------------QLD 261 (380)
T ss_dssp TTCCHHHHHHHHHH-------CCSEEEEEEE--CC----HHHHHHH--HHTTCSEEEECCGGGT-------------SCT
T ss_pred ccccHHHHHHHHHh-------cCCCEEEEec--Cc----HHHHHHH--HHcCCCEEEEcCCCCC-------------cCC
Confidence 44456788888876 6899999963 23 3457778 8999999999765321 001
Q ss_pred CCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCc---------hHHHHHHHHHH
Q psy5880 237 SGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGP---------PLVTRIKSELE 307 (328)
Q Consensus 237 sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp---------~~~~~i~~~l~ 307 (328)
.+++ .++.+.++++.++ +|||++|||++++|+.+++.+|||+|++||++++. . ..++.+.++++
T Consensus 262 ~~~~----~~~~l~~v~~~~~--~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~-~~~~g~~~v~~~~~~l~~el~ 334 (380)
T 1p4c_A 262 CAIS----PMEVLAQSVAKTG--KPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYG-LAARGETGVDEVLTLLKADID 334 (380)
T ss_dssp TCCC----GGGTHHHHHHHHC--SCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcC----HHHHHHHHHHHcC--CeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHHH-HHhcCHHHHHHHHHHHHHHHH
Confidence 1222 3567788888887 79999999999999999999999999999999853 5 36889999999
Q ss_pred HHHHHhCCCCHHHHhcccc
Q psy5880 308 ELLQKEGYNSVSQAVGAAH 326 (328)
Q Consensus 308 ~~m~~~g~~si~e~~G~~~ 326 (328)
.+|...|++++.|+++...
T Consensus 335 ~~m~~~G~~~i~el~~~~l 353 (380)
T 1p4c_A 335 RTLAQIGCPDITSLSPDYL 353 (380)
T ss_dssp HHHHHHTCCBGGGCCGGGE
T ss_pred HHHHHhCCCCHHHhccCeE
Confidence 9999999999999998653
No 44
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=99.60 E-value=1.3e-14 Score=138.12 Aligned_cols=171 Identities=20% Similarity=0.228 Sum_probs=111.5
Q ss_pred CCcccccCCCCcCChhhHHHHHHHhHHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcC--
Q psy5880 19 SGEWGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAL-- 96 (328)
Q Consensus 19 ~~~~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~-- 96 (328)
...+|+|+++|+.+++ . ++||.++++.+..++||+++|+||||++|++.+|+++.+.+++.+|++...++..
T Consensus 181 ~~~vgvnIg~nk~t~~-~-----~~Dy~~~a~~l~~~ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~ 254 (415)
T 3i65_A 181 KHIVGVSIGKNKDTVN-I-----VDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNN 254 (415)
T ss_dssp TCEEEEEECCCTTCSC-H-----HHHHHHHHHHHGGGCSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEeccccCccc-c-----HHHHHHHHHHHHhhCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcccc
Confidence 4579999999998853 2 3589999999999999999999999999999999999999999999988643211
Q ss_pred -----------CCCCc-chhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEc-cCC--CCCc------chhhh-
Q psy5880 97 -----------KPLPP-ILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVN-VSS--PNTA------NLRKL- 154 (328)
Q Consensus 97 -----------~~~~P-v~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN-~sc--Pn~~------g~~~~- 154 (328)
...+| +++|++|+++ .+.+.++++.+++++ +|+|.+. ..- +... +.-+.
T Consensus 255 ~~~~~~~~~~~~~~~P~V~VKi~pd~~-------~~~i~~iA~~a~~aG--aDgIiv~Ntt~~r~dl~~~~~~~GGlSG~ 325 (415)
T 3i65_A 255 IMNDEFLWFNTTKKKPLVFVKLAPDLN-------QEQKKEIADVLLETN--IDGMIISNTTTQINDIKSFENKKGGVSGA 325 (415)
T ss_dssp CSCHHHHCCSSSSSCCEEEEEECSCCC-------HHHHHHHHHHHHHHT--CSEEEECCCBSCCCCCGGGTTCCSEEEEG
T ss_pred cccccccccccCCCCCeEEEEecCCCC-------HHHHHHHHHHHHHcC--CcEEEEeCCCcccccccccccccCCcCCc
Confidence 12467 8999999874 456888888888888 9998753 211 1100 00000
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEec
Q psy5880 155 QAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 155 ~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
.......+++..+++.. + .++||+.= .++.. ..++.+.+ .+|+|+|.+..
T Consensus 326 a~~p~al~~I~~v~~~v---~--~~iPIIg~--GGI~s--~eDa~e~l---~aGAd~VqIgr 375 (415)
T 3i65_A 326 KLKDISTKFICEMYNYT---N--KQIPIIAS--GGIFS--GLDALEKI---EAGASVCQLYS 375 (415)
T ss_dssp GGHHHHHHHHHHHHHHT---T--TCSCEEEC--SSCCS--HHHHHHHH---HHTEEEEEESH
T ss_pred cchHHHHHHHHHHHHHh---C--CCCCEEEE--CCCCC--HHHHHHHH---HcCCCEEEEcH
Confidence 01123456666666652 1 36898753 33332 34555555 58999986654
No 45
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=99.58 E-value=7.5e-14 Score=130.79 Aligned_cols=165 Identities=13% Similarity=0.145 Sum_probs=114.8
Q ss_pred HHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccc
Q psy5880 126 VKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDS 205 (328)
Q Consensus 126 ~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~ 205 (328)
++.+..++..++++++|++. + ++....++++++++. .+.|+++|-. ..+ .+.++.+ .
T Consensus 111 a~~~~~~g~~~~~i~i~~~~----G-----~~~~~~~~i~~lr~~-------~~~~~vi~G~-v~s----~e~A~~a--~ 167 (336)
T 1ypf_A 111 VQQLAAEHLTPEYITIDIAH----G-----HSNAVINMIQHIKKH-------LPESFVIAGN-VGT----PEAVREL--E 167 (336)
T ss_dssp HHHHHHTTCCCSEEEEECSS----C-----CSHHHHHHHHHHHHH-------CTTSEEEEEE-ECS----HHHHHHH--H
T ss_pred HHHHHhcCCCCCEEEEECCC----C-----CcHHHHHHHHHHHHh-------CCCCEEEECC-cCC----HHHHHHH--H
Confidence 33333333238899998752 1 345567888888876 4445555521 122 3567888 8
Q ss_pred cCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCee
Q psy5880 206 KCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLV 285 (328)
Q Consensus 206 ~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V 285 (328)
++|+|+|+++|+.....++. + ..+...+ - +.+..+.++++.++ +|||++|||++++|+.+++.+|||+|
T Consensus 168 ~aGad~Ivvs~hgG~~~~~~-~-----~~~~g~~-g--~~~~~l~~v~~~~~--ipVIa~GGI~~g~Dv~kalalGAdaV 236 (336)
T 1ypf_A 168 NAGADATKVGIGPGKVCITK-I-----KTGFGTG-G--WQLAALRWCAKAAS--KPIIADGGIRTNGDVAKSIRFGATMV 236 (336)
T ss_dssp HHTCSEEEECSSCSTTCHHH-H-----HHSCSST-T--CHHHHHHHHHHTCS--SCEEEESCCCSTHHHHHHHHTTCSEE
T ss_pred HcCCCEEEEecCCCceeecc-c-----ccCcCCc-h--hHHHHHHHHHHHcC--CcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 99999999977532100000 0 0111111 0 14677888888875 99999999999999999999999999
Q ss_pred eehhHHhh-------------------cC---------c-----------------hHHHHHHHHHHHHHHHhCCCCHHH
Q psy5880 286 QIYTSFVY-------------------HG---------P-----------------PLVTRIKSELEELLQKEGYNSVSQ 320 (328)
Q Consensus 286 ~vg~a~l~-------------------~g---------p-----------------~~~~~i~~~l~~~m~~~g~~si~e 320 (328)
++||+++. .+ . .+++.+..+|+..|...|++|++|
T Consensus 237 ~iGr~~l~t~Es~~~~~~~~g~~~k~~~g~~~~~~~g~~~~~~g~~~~~~~~g~~~~~~~~l~~el~~~m~~~G~~~i~e 316 (336)
T 1ypf_A 237 MIGSLFAGHEESPGETIEKDGKLYKEYFGSASEFQKGEKKNVEGKKMFVEHKGSLEDTLIEMEQDLQSSISYAGGTKLDS 316 (336)
T ss_dssp EESGGGTTCTTSSSCCC-----------------------CTTSCCSSSSCCCCHHHHHHHHHHHHHHHHHHTTSSBGGG
T ss_pred EeChhhhccccCCCceeeeCCeEeeeeecccchhhccCccccccceeeecccccHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence 99999982 12 1 678899999999999999999999
Q ss_pred Hhcc
Q psy5880 321 AVGA 324 (328)
Q Consensus 321 ~~G~ 324 (328)
|+..
T Consensus 317 l~~~ 320 (336)
T 1ypf_A 317 IRTV 320 (336)
T ss_dssp GGGC
T ss_pred hCcC
Confidence 9653
No 46
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=99.55 E-value=3.7e-14 Score=125.53 Aligned_cols=119 Identities=20% Similarity=0.259 Sum_probs=91.4
Q ss_pred cccEEE--EccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe---CCCCChhhHHHHHHHhccccCCc
Q psy5880 135 VAHYFV--VNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI---APDLSLDEKKDIADVVLDSKCKV 209 (328)
Q Consensus 135 ~~d~ie--iN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl---~~~~~~~~~~~~a~~l~~~~~G~ 209 (328)
++|.|+ +|++| .+..+ .+.+.+.+++|+++ .+ |+++|+ +++++.+++.++++.+ .++|+
T Consensus 83 Gad~Id~viN~g~-----~~~~~-~~~~~~~i~~v~~a-------~~-pv~vKvi~e~~~l~~~~~~~~a~~a--~eaGa 146 (225)
T 1mzh_A 83 GAQELDIVWNLSA-----FKSEK-YDFVVEELKEIFRE-------TP-SAVHKVIVETPYLNEEEIKKAVEIC--IEAGA 146 (225)
T ss_dssp TCSEEEEECCHHH-----HHTTC-HHHHHHHHHHHHHT-------CT-TSEEEEECCGGGCCHHHHHHHHHHH--HHHTC
T ss_pred CCCEEEEEecHHH-----HhcCC-hHHHHHHHHHHHHH-------hc-CceEEEEEeCCCCCHHHHHHHHHHH--HHhCC
Confidence 499998 78887 22222 24455557777765 45 999999 8889888899999999 99999
Q ss_pred cEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehh
Q psy5880 210 DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 210 d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~ 289 (328)
|+| .+++.+. .|| ..++.++.+++.++.++||+++|||+|++|+.+++++|||.|++++
T Consensus 147 d~I-~tstg~~------------~gg--------a~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s~ 205 (225)
T 1mzh_A 147 DFI-KTSTGFA------------PRG--------TTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTSS 205 (225)
T ss_dssp SEE-ECCCSCS------------SSC--------CCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred CEE-EECCCCC------------CCC--------CCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHHHHcc
Confidence 999 4454221 122 1357888888888656999999999999999999999999887776
Q ss_pred H
Q psy5880 290 S 290 (328)
Q Consensus 290 a 290 (328)
+
T Consensus 206 ~ 206 (225)
T 1mzh_A 206 G 206 (225)
T ss_dssp H
T ss_pred H
Confidence 5
No 47
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=99.52 E-value=2.6e-13 Score=130.27 Aligned_cols=166 Identities=19% Similarity=0.204 Sum_probs=112.5
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCC-CCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKP-LPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~-~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
.+.++.+..++ +|++++|.++ + +++.+.++++++++. . ++||+++-.. + .+.++.
T Consensus 155 ~~~a~~~~~~G--~d~i~i~~~~----g-----~~~~~~e~i~~ir~~-------~~~~pviv~~v~--~----~~~a~~ 210 (404)
T 1eep_A 155 IERVEELVKAH--VDILVIDSAH----G-----HSTRIIELIKKIKTK-------YPNLDLIAGNIV--T----KEAALD 210 (404)
T ss_dssp HHHHHHHHHTT--CSEEEECCSC----C-----SSHHHHHHHHHHHHH-------CTTCEEEEEEEC--S----HHHHHH
T ss_pred HHHHHHHHHCC--CCEEEEeCCC----C-----ChHHHHHHHHHHHHH-------CCCCeEEEcCCC--c----HHHHHH
Confidence 33344444444 9999998663 1 345677888888876 4 7899985221 2 356778
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC-CCccEEEecCCCCHHHHHHHHHh
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK-GKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~-~~ipvia~GGI~s~~da~~~l~~ 280 (328)
+ .++|+|+|+++.. .+.... ....+++.++ .+..+..+++..+ .++|||++|||++++|+.+++.+
T Consensus 211 a--~~~Gad~I~vg~~-~G~~~~-----~~~~~~~g~p-----~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~ 277 (404)
T 1eep_A 211 L--ISVGADCLKVGIG-PGSICT-----TRIVAGVGVP-----QITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAA 277 (404)
T ss_dssp H--HTTTCSEEEECSS-CSTTSH-----HHHHHCCCCC-----HHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHH
T ss_pred H--HhcCCCEEEECCC-CCcCcC-----ccccCCCCcc-----hHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHc
Confidence 8 8999999998321 110000 0001223222 2344444444322 24999999999999999999999
Q ss_pred ccCeeeehhHHhhc-------------------------------------------------C-----------chHHH
Q psy5880 281 GASLVQIYTSFVYH-------------------------------------------------G-----------PPLVT 300 (328)
Q Consensus 281 GAd~V~vg~a~l~~-------------------------------------------------g-----------p~~~~ 300 (328)
|||+|++||+++.. | -++++
T Consensus 278 GAd~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g~~~~g~~~~g~~~~~~~g~~~~~~~l~~~g~~~~v~~~~~v~~~~~ 357 (404)
T 1eep_A 278 GADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILT 357 (404)
T ss_dssp TCSEEEECHHHHTBTTSSSCEEEETTEEEEC------------------------------------CEECCBCHHHHHH
T ss_pred CCCHHhhCHHHhcCCCCCcchhhhCCeEEeecCCCCCHHHHhhccccchhcccccccccccCceeEEeccCCccHHHHHH
Confidence 99999999999521 1 05678
Q ss_pred HHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 301 RIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 301 ~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
.+..+++..|...|++|++||+...
T Consensus 358 ~l~~el~~~m~~~G~~~i~~l~~~~ 382 (404)
T 1eep_A 358 QLKGGLMSGMGYLGAATISDLKINS 382 (404)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHSC
T ss_pred HHHHHHHHHHHHhCCCCHHHHhhcC
Confidence 8889999999999999999998753
No 48
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=99.51 E-value=3.6e-13 Score=127.25 Aligned_cols=170 Identities=28% Similarity=0.354 Sum_probs=119.6
Q ss_pred CcccccCCCCcCChhhHHHHHHHhHHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCC
Q psy5880 20 GEWGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPL 99 (328)
Q Consensus 20 ~~~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~ 99 (328)
..+++|++.||.+++ .+ ++|.++++.+..++||+++|+||||++|++.+++++.+.++++++++.+..+.....
T Consensus 147 ~pv~vniggn~~t~~-~~-----~dy~~~~~~~~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~ 220 (367)
T 3zwt_A 147 LPLGVNLGKNKTSVD-AA-----EDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHR 220 (367)
T ss_dssp CCEEEEECCCTTCSC-HH-----HHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGC
T ss_pred ceEEEEEecCCCCCc-CH-----HHHHHHHHHHhhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCC
Confidence 469999999998743 33 489999999999999999999999999999999999999999999988654321135
Q ss_pred CcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEc-cC--CCCCc---------chhhhhhhHHHHHHHHHH
Q psy5880 100 PPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVN-VS--SPNTA---------NLRKLQAKDQLKHLLKTV 167 (328)
Q Consensus 100 ~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN-~s--cPn~~---------g~~~~~~~~~~~~i~~~v 167 (328)
.|+++|++|+++ .+.+.++++.+++++ +|+|.++ .+ .+... |..-........+++..|
T Consensus 221 ~Pv~vKi~p~~~-------~~~~~~ia~~~~~aG--adgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i 291 (367)
T 3zwt_A 221 PAVLVKIAPDLT-------SQDKEDIASVVKELG--IDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREM 291 (367)
T ss_dssp CEEEEEECSCCC-------HHHHHHHHHHHHHHT--CCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHH
T ss_pred ceEEEEeCCCCC-------HHHHHHHHHHHHHcC--CCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHH
Confidence 799999999873 456788888888888 9999864 22 22110 110001122345667777
Q ss_pred HHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEec
Q psy5880 168 VETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 168 ~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
++.. + .++||+.= .++.. ..++.+.+ ++|+|+|.+..
T Consensus 292 ~~~v---~--~~ipvI~~--GGI~s--~~da~~~l---~~GAd~V~vgr 328 (367)
T 3zwt_A 292 YALT---Q--GRVPIIGV--GGVSS--GQDALEKI---RAGASLVQLYT 328 (367)
T ss_dssp HHHT---T--TCSCEEEE--SSCCS--HHHHHHHH---HHTCSEEEESH
T ss_pred HHHc---C--CCceEEEE--CCCCC--HHHHHHHH---HcCCCEEEECH
Confidence 6662 1 27888754 33321 34444545 58999996653
No 49
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.51 E-value=4.2e-13 Score=132.64 Aligned_cols=168 Identities=18% Similarity=0.172 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
..+.++.+..++ +|+|++|.+|.+ +....++++++++.. .++||++|-. .+ .+.++.
T Consensus 256 ~~~~a~~~~~aG--~d~v~i~~~~G~---------~~~~~~~i~~i~~~~------~~~pvi~~~v--~t----~~~a~~ 312 (514)
T 1jcn_A 256 DKYRLDLLTQAG--VDVIVLDSSQGN---------SVYQIAMVHYIKQKY------PHLQVIGGNV--VT----AAQAKN 312 (514)
T ss_dssp HHHHHHHHHHTT--CSEEEECCSCCC---------SHHHHHHHHHHHHHC------TTCEEEEEEE--CS----HHHHHH
T ss_pred hHHHHHHHHHcC--CCEEEeeccCCc---------chhHHHHHHHHHHhC------CCCceEeccc--ch----HHHHHH
Confidence 344455555555 999999988632 234567888888762 2789998722 22 345788
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+ .++|+|+|++++...+ .... ....+. |.+ .+..+..++++++.++ +|||++|||++++|+.+++.+|
T Consensus 313 l--~~aGad~I~vg~~~G~-~~~t-----~~~~~~-g~~-~~~~~~~~~~~~~~~~--ipVia~GGI~~~~di~kala~G 380 (514)
T 1jcn_A 313 L--IDAGVDGLRVGMGCGS-ICIT-----QEVMAC-GRP-QGTAVYKVAEYARRFG--VPIIADGGIQTVGHVVKALALG 380 (514)
T ss_dssp H--HHHTCSEEEECSSCSC-CBTT-----BCCCSC-CCC-HHHHHHHHHHHHGGGT--CCEEEESCCCSHHHHHHHHHTT
T ss_pred H--HHcCCCEEEECCCCCc-cccc-----ccccCC-Ccc-chhHHHHHHHHHhhCC--CCEEEECCCCCHHHHHHHHHcC
Confidence 8 8999999988432111 0000 000111 111 2456788888888876 9999999999999999999999
Q ss_pred cCeeeehhHHhhc------------------------------------------------C-----------chHHHHH
Q psy5880 282 ASLVQIYTSFVYH------------------------------------------------G-----------PPLVTRI 302 (328)
Q Consensus 282 Ad~V~vg~a~l~~------------------------------------------------g-----------p~~~~~i 302 (328)
||+|++||+++.. | -+++..+
T Consensus 381 Ad~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~g~~~~~i~~l 460 (514)
T 1jcn_A 381 ASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYL 460 (514)
T ss_dssp CSEEEESTTTTTSTTSSCC--------------------------------------------------CCCHHHHHHHH
T ss_pred CCeeeECHHHHcCCcCCcceEeECCEEEEEecCcCCHHHHhhccccchhhccccccceecccceecCCCcccHHHHHHHH
Confidence 9999999987531 1 2456788
Q ss_pred HHHHHHHHHHhCCCCHHHHhcc
Q psy5880 303 KSELEELLQKEGYNSVSQAVGA 324 (328)
Q Consensus 303 ~~~l~~~m~~~g~~si~e~~G~ 324 (328)
..+++..|...|++|++||+..
T Consensus 461 ~~~l~~~m~~~G~~~i~~l~~~ 482 (514)
T 1jcn_A 461 IAGIQHGCQDIGARSLSVLRSM 482 (514)
T ss_dssp HHHHHHHHHHHTCSBHHHHHHH
T ss_pred HHHHHHHHHhhCcccHHHHHhh
Confidence 9999999999999999999875
No 50
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.46 E-value=6.7e-13 Score=141.55 Aligned_cols=149 Identities=20% Similarity=0.253 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCC
Q psy5880 157 KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGL 236 (328)
Q Consensus 157 ~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~ 236 (328)
.+.+.++++.+++.. .++||+||+.+..+ +...|+.+ .++|+|+|++.|...+. ...+.......|
T Consensus 977 ~edl~~~I~~Lk~~~------~~~PV~VKlv~~~g---i~~~A~~a--~~AGAD~IvVsG~eGGT--gasp~~~~~~~G- 1042 (1479)
T 1ea0_A 977 IEDLAQLIYDLKQIN------PDAKVTVKLVSRSG---IGTIAAGV--AKANADIILISGNSGGT--GASPQTSIKFAG- 1042 (1479)
T ss_dssp HHHHHHHHHHHHHHC------TTCEEEEEEECCTT---HHHHHHHH--HHTTCSEEEEECTTCCC--SSEETTHHHHSC-
T ss_pred HHHHHHHHHHHHHhC------CCCCEEEEEcCCCC---hHHHHHHH--HHcCCcEEEEcCCCCCC--CCCchhhhcCCc-
Confidence 355677888887761 37899999988654 44567888 89999999998763220 000000000011
Q ss_pred CCCcCchHHHHHHHHHHHHc-----CCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc-----------------
Q psy5880 237 SGEPLRNKSTELISEMYKLT-----KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH----------------- 294 (328)
Q Consensus 237 sg~~~~~~~l~~v~~i~~~~-----~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~----------------- 294 (328)
. | ....+.++++.+ ..++|||+.|||.|+.|+.+++.+||++|++||++|+.
T Consensus 1043 --~---P-t~~aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~a~gc~~~r~Ch~~~CP~G 1116 (1479)
T 1ea0_A 1043 --L---P-WEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVG 1116 (1479)
T ss_dssp --C---C-HHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTS
T ss_pred --h---h-HHHHHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHHHHHHHHHHhhccCCCCCce
Confidence 1 1 123344444432 23699999999999999999999999999999999752
Q ss_pred ----Cc--------------hHHHHHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 295 ----GP--------------PLVTRIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 295 ----gp--------------~~~~~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
+| .++..+.++++.+|...|++|++||+|..
T Consensus 1117 vatqdp~l~~~~~gg~e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~g~~ 1165 (1479)
T 1ea0_A 1117 VCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVIGRT 1165 (1479)
T ss_dssp SSCCCTTGGGSCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCSGGGTTCG
T ss_pred eEEeCHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhCch
Confidence 12 26899999999999999999999998865
No 51
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=99.45 E-value=1.6e-12 Score=124.32 Aligned_cols=166 Identities=18% Similarity=0.200 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhH-HHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKD-QLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~-~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
.++++.+..++ +|++++|.+ |...... .+. ...+ +.++++. .++||++|-. .+. +-++.
T Consensus 168 ~e~a~~~~~ag--ad~i~i~~~-~~~~~~~---~~~~~~~~-i~~l~~~-------~~~pvi~ggi--~t~----e~a~~ 227 (393)
T 2qr6_A 168 REIAPIVIKAG--ADLLVIQGT-LISAEHV---NTGGEALN-LKEFIGS-------LDVPVIAGGV--NDY----TTALH 227 (393)
T ss_dssp HHHHHHHHHTT--CSEEEEECS-SCCSSCC---CC-----C-HHHHHHH-------CSSCEEEECC--CSH----HHHHH
T ss_pred HHHHHHHHHCC--CCEEEEeCC-ccccccC---CCcccHHH-HHHHHHh-------cCCCEEECCc--CCH----HHHHH
Confidence 45555555555 899998743 2111110 011 1222 4455554 6899999733 332 33677
Q ss_pred hccccCCccEEEEecCCcc-chhhhccccccccCCCCCCcCchHHHHHHHHHHHH-------cCCC-ccEEEecCCCCHH
Q psy5880 202 VLDSKCKVDGLIVSNTTVD-RYEYLDARYKEETGGLSGEPLRNKSTELISEMYKL-------TKGK-LPIIGVGGVFSGK 272 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~-~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~-------~~~~-ipvia~GGI~s~~ 272 (328)
+ .++|+|+|++++.... +. ..+ .|. ..++.+.++++. ++++ +|||++|||++++
T Consensus 228 ~--~~~Gad~i~vg~Gg~~~~~----------~~~-~g~----~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~ 290 (393)
T 2qr6_A 228 M--MRTGAVGIIVGGGENTNSL----------ALG-MEV----SMATAIADVAAARRDYLDETGGRYVHIIADGSIENSG 290 (393)
T ss_dssp H--HTTTCSEEEESCCSCCHHH----------HTS-CCC----CHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHH
T ss_pred H--HHcCCCEEEECCCcccccc----------cCC-CCC----ChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHH
Confidence 7 7899999999652111 00 011 122 234555555554 4433 9999999999999
Q ss_pred HHHHHHHhccCeeeehhHHhhc----------C-----------c------------hHHH-------------HHHHHH
Q psy5880 273 DAFEKIKAGASLVQIYTSFVYH----------G-----------P------------PLVT-------------RIKSEL 306 (328)
Q Consensus 273 da~~~l~~GAd~V~vg~a~l~~----------g-----------p------------~~~~-------------~i~~~l 306 (328)
|+.+++.+|||+|++||+++.. | . .+.+ .+..+|
T Consensus 291 dv~kalalGA~~V~iG~~~l~~~es~~~~~~~g~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~el 370 (393)
T 2qr6_A 291 DVVKAIACGADAVVLGSPLARAEEAAGKGYFWPAVAAHPRFPRGVVTESVDLDEAAPSLEQILHGPSTMPWGVENFEGGL 370 (393)
T ss_dssp HHHHHHHHTCSEEEECGGGGGSTTCTTTTEECCGGGGCSSSCCCCCEECC----CCCCHHHHHHCCCSCTTSSSCHHHHH
T ss_pred HHHHHHHcCCCEEEECHHHHcCCCCCCceEEEecccCcccCCCccccccccccccchhHHHHhccchhHHHHHHHHHHHH
Confidence 9999999999999999997421 1 0 1222 446999
Q ss_pred HHHHHHhCCCCHHHHhccc
Q psy5880 307 EELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 307 ~~~m~~~g~~si~e~~G~~ 325 (328)
+..|...|++|++||+...
T Consensus 371 ~~~m~~~G~~~i~el~~~~ 389 (393)
T 2qr6_A 371 KRALAKCGYTDLKSFQKVS 389 (393)
T ss_dssp HHHHHHHTCSBHHHHTTCC
T ss_pred HHHHHHhCCCCHHHHhhcc
Confidence 9999999999999998643
No 52
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.44 E-value=9.5e-13 Score=140.64 Aligned_cols=149 Identities=18% Similarity=0.221 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCC
Q psy5880 157 KDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGL 236 (328)
Q Consensus 157 ~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~ 236 (328)
++.+.++++.+++.. .++||+||+.+..+ +...|..+ .++|+|+|++.|...+. ...+.......|
T Consensus 1012 ~edl~~~I~~Lk~~~------~~~PV~VKlv~~~g---i~~~A~~a--~kAGAD~IvVsG~eGGT--gasp~~~~~~~G- 1077 (1520)
T 1ofd_A 1012 IEDLAQLIYDLHQIN------PEAQVSVKLVAEIG---IGTIAAGV--AKANADIIQISGHDGGT--GASPLSSIKHAG- 1077 (1520)
T ss_dssp HHHHHHHHHHHHHHC------TTSEEEEEEECSTT---HHHHHHHH--HHTTCSEEEEECTTCCC--SSEEHHHHHHBC-
T ss_pred HHHHHHHHHHHHHhC------CCCCEEEEecCCCC---hHHHHHHH--HHcCCCEEEEeCCCCcc--CCCcchhhcCCc-
Confidence 455677888888761 37899999988654 44567778 89999999998754220 000000000011
Q ss_pred CCCcCchHHHHHHHHHHHHc-----CCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc-----------------
Q psy5880 237 SGEPLRNKSTELISEMYKLT-----KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH----------------- 294 (328)
Q Consensus 237 sg~~~~~~~l~~v~~i~~~~-----~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~----------------- 294 (328)
. | ....+.++++.+ ..++|||+.|||.|+.|+.+++.+||++|++||++|+.
T Consensus 1078 --l---P-t~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~algc~~~r~Ch~~~CP~G 1151 (1520)
T 1ofd_A 1078 --S---P-WELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVG 1151 (1520)
T ss_dssp --C---C-HHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCCCGGGTCCTTS
T ss_pred --h---h-HHHHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHHHHHHHHHHHhccCCCCCce
Confidence 1 1 123334443332 23599999999999999999999999999999999752
Q ss_pred ----Cch--------------HHHHHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 295 ----GPP--------------LVTRIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 295 ----gp~--------------~~~~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
+|. ++..+.++++.+|...|++|++||+|..
T Consensus 1152 vatqdp~L~~~~~gg~e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~gr~ 1200 (1520)
T 1ofd_A 1152 VATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRT 1200 (1520)
T ss_dssp SSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTTCG
T ss_pred eEeeCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhCcc
Confidence 122 6888999999999999999999998754
No 53
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=99.42 E-value=3.7e-12 Score=122.80 Aligned_cols=171 Identities=21% Similarity=0.253 Sum_probs=116.5
Q ss_pred CCcccccCCCCcCChhhHHHHHHHhHHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcC--
Q psy5880 19 SGEWGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAL-- 96 (328)
Q Consensus 19 ~~~~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~-- 96 (328)
...+|+|+++|+.+++ ..++|.++++++..++||+++|+||||++|++.+++.+.+.+++++|++...++..
T Consensus 179 ~~~vgvni~~~~~~~~------~~~dy~~~a~~l~~~aD~ieiNiscPnt~Glr~lq~~~~l~~il~~v~~~~~~~~~~~ 252 (443)
T 1tv5_A 179 KHIVGVSIGKNKDTVN------IVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNN 252 (443)
T ss_dssp TCEEEEEECCCTTCSC------HHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHHHC---
T ss_pred CceEEEEecCcccchH------HHHHHHHHHHHHhcCCCEEEEeccCCCCcccccccCHHHHHHHHHHHHHHHhhhcccC
Confidence 3579999999986642 24689999999999999999999999999999999999999999999987533210
Q ss_pred -----------------------------------------CCCCc-chhcccCCcccccccchhHHHHHHHHHHHHhcc
Q psy5880 97 -----------------------------------------KPLPP-ILVKIAPDLSLDEKKDIADVVLDSVKGILKFGD 134 (328)
Q Consensus 97 -----------------------------------------~~~~P-v~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~ 134 (328)
....| +++|++|+++ .+++.++++.+++++
T Consensus 253 ~~~~g~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~vKispd~~-------~ed~~~iA~~~~~aG- 324 (443)
T 1tv5_A 253 IMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLN-------QEQKKEIADVLLETN- 324 (443)
T ss_dssp -----------------------------------CCCCSSSSSCCEEEEEECSCCC-------HHHHHHHHHHHHHTT-
T ss_pred ccccccCHHHHHHHHHHhhcccccchhhhhhhhhcchhcccCCCCCeEEEEeCCCCC-------HHHHHHHHHHHHHcC-
Confidence 02457 8999999863 446778888888877
Q ss_pred cccEEEEccCCCCCc----------chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhcc
Q psy5880 135 VAHYFVVNVSSPNTA----------NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLD 204 (328)
Q Consensus 135 ~~d~ieiN~scPn~~----------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~ 204 (328)
+|+|.+.-...... +..-........+++..|++. ++ .++||+.==.. .+ ..++.+.+
T Consensus 325 -aDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~---v~--~~iPVIg~GGI-~s---~~DA~e~l-- 392 (443)
T 1tv5_A 325 -IDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNY---TN--KQIPIIASGGI-FS---GLDALEKI-- 392 (443)
T ss_dssp -CSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHH---TT--TCSCEEEESSC-CS---HHHHHHHH--
T ss_pred -CCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHH---cC--CCCcEEEECCC-CC---HHHHHHHH--
Confidence 99987642211100 000000011234666666665 21 27898764221 23 34454555
Q ss_pred ccCCccEEEEec
Q psy5880 205 SKCKVDGLIVSN 216 (328)
Q Consensus 205 ~~~G~d~i~~~n 216 (328)
.+|||+|-+..
T Consensus 393 -~aGAd~Vqigr 403 (443)
T 1tv5_A 393 -EAGASVCQLYS 403 (443)
T ss_dssp -HTTEEEEEESH
T ss_pred -HcCCCEEEEcH
Confidence 68999986653
No 54
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=99.39 E-value=3.7e-12 Score=119.07 Aligned_cols=124 Identities=22% Similarity=0.330 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
..+.++.+.+++ +|+|++|.+||. ++++.+++ .++|+++|+.. .+.++.
T Consensus 77 ~~~~~~~a~~~g--~d~V~~~~g~p~--------------~~i~~l~~--------~g~~v~~~v~~-------~~~a~~ 125 (332)
T 2z6i_A 77 VEDIVDLVIEEG--VKVVTTGAGNPS--------------KYMERFHE--------AGIIVIPVVPS-------VALAKR 125 (332)
T ss_dssp HHHHHHHHHHTT--CSEEEECSSCGG--------------GTHHHHHH--------TTCEEEEEESS-------HHHHHH
T ss_pred HHHHHHHHHHCC--CCEEEECCCChH--------------HHHHHHHH--------cCCeEEEEeCC-------HHHHHH
Confidence 566667777766 999999998762 23445543 46899999842 345677
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+ .++|+|+|.+.+.. .||..|. ...+..++++++.++ +|||++|||.+++++.+++.+|
T Consensus 126 ~--~~~GaD~i~v~g~~--------------~GG~~g~---~~~~~ll~~i~~~~~--iPViaaGGI~~~~~~~~al~~G 184 (332)
T 2z6i_A 126 M--EKIGADAVIAEGME--------------AGGHIGK---LTTMTLVRQVATAIS--IPVIAAGGIADGEGAAAGFMLG 184 (332)
T ss_dssp H--HHTTCSCEEEECTT--------------SSEECCS---SCHHHHHHHHHHHCS--SCEEEESSCCSHHHHHHHHHTT
T ss_pred H--HHcCCCEEEEECCC--------------CCCCCCC---ccHHHHHHHHHHhcC--CCEEEECCCCCHHHHHHHHHcC
Confidence 7 88999999997642 1344442 234678888988886 9999999999999999999999
Q ss_pred cCeeeehhHHhhcCchH
Q psy5880 282 ASLVQIYTSFVYHGPPL 298 (328)
Q Consensus 282 Ad~V~vg~a~l~~gp~~ 298 (328)
||+|++||+++.. |++
T Consensus 185 AdgV~vGs~~l~~-~e~ 200 (332)
T 2z6i_A 185 AEAVQVGTRFVVA-KES 200 (332)
T ss_dssp CSEEEECHHHHTB-TTC
T ss_pred CCEEEecHHHhcC-ccc
Confidence 9999999999864 654
No 55
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=99.38 E-value=2.9e-11 Score=113.44 Aligned_cols=165 Identities=18% Similarity=0.206 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
...+.++.+.+++ +|.|+++.++.+. ..+.+.++++++.. .++||++|-.. + .+.++
T Consensus 100 ~~~e~~~~a~~aG--vdvI~id~a~G~~---------~~~~e~I~~ir~~~------~~~~Vi~G~V~--T----~e~A~ 156 (361)
T 3r2g_A 100 NELQRAEALRDAG--ADFFCVDVAHAHA---------KYVGKTLKSLRQLL------GSRCIMAGNVA--T----YAGAD 156 (361)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECSCCSS---------HHHHHHHHHHHHHH------TTCEEEEEEEC--S----HHHHH
T ss_pred HHHHHHHHHHHcC--CCEEEEeCCCCCc---------HhHHHHHHHHHHhc------CCCeEEEcCcC--C----HHHHH
Confidence 4456677777766 9999998875432 34567778887763 47899997221 2 24467
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .++|+|+|.+++.......+. ...|. |. | .+..+.++++... |||+.|||+++.|+.++|++
T Consensus 157 ~a--~~aGaD~I~Vg~g~G~~~~tr------~~~g~-g~---p-~l~aI~~~~~~~~---PVIAdGGI~~~~di~kALa~ 220 (361)
T 3r2g_A 157 YL--ASCGADIIKAGIGGGSVCSTR------IKTGF-GV---P-MLTCIQDCSRADR---SIVADGGIKTSGDIVKALAF 220 (361)
T ss_dssp HH--HHTTCSEEEECCSSSSCHHHH------HHHCC-CC---C-HHHHHHHHTTSSS---EEEEESCCCSHHHHHHHHHT
T ss_pred HH--HHcCCCEEEEcCCCCcCcccc------ccCCc-cH---H-HHHHHHHHHHhCC---CEEEECCCCCHHHHHHHHHc
Confidence 78 899999999864321100000 00011 11 2 3455555554432 99999999999999999999
Q ss_pred ccCeeeehhHHhhc---------------------------------------------------Cc--hHHHHHHHHHH
Q psy5880 281 GASLVQIYTSFVYH---------------------------------------------------GP--PLVTRIKSELE 307 (328)
Q Consensus 281 GAd~V~vg~a~l~~---------------------------------------------------gp--~~~~~i~~~l~ 307 (328)
|||+|++||+|+.. |+ +++..+..+|+
T Consensus 221 GAd~V~iGr~f~~t~Espg~~~~~~~g~~~k~y~Gm~s~~~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~~~~glr 300 (361)
T 3r2g_A 221 GADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRYRGMASREAQEAFLGQMHEWKTAEGVATEVPFKENPDGIIADIIGGLR 300 (361)
T ss_dssp TCSEEEESGGGTTBTTSSSCEEECTTSCEEEEESCCHHHHHHHHHTTCCSTTCCSCCCCEEEECBCCHHHHHHHHHHHHH
T ss_pred CCCEEEEChHHhCCccCCceeEEecCCeEEEEEecCCCcchhhhhhccccccccCCcceeecCCCCCHHHHHHHHHHHHH
Confidence 99999999988521 11 45788889999
Q ss_pred HHHHHhCCCCHHHHhcc
Q psy5880 308 ELLQKEGYNSVSQAVGA 324 (328)
Q Consensus 308 ~~m~~~g~~si~e~~G~ 324 (328)
.-|.-.|.++|.||+-+
T Consensus 301 ~~m~y~G~~~i~~l~~~ 317 (361)
T 3r2g_A 301 SGLTYAGADSISELQRK 317 (361)
T ss_dssp HHHHHTTCSSHHHHHHT
T ss_pred HHhhhcCcccHHHHHhC
Confidence 99999999999999654
No 56
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=99.36 E-value=1.5e-11 Score=115.64 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=106.2
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCC-CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKP-LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLI 213 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~-~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~ 213 (328)
+++.++++++. + ++..+.+.++++++. . ++||++|-.. + .+-++.+ .++|+|+|+
T Consensus 132 g~~~i~i~~~~----g-----~~~~~~~~i~~lr~~-------~~~~~vi~g~v~--t----~e~A~~a--~~aGaD~I~ 187 (351)
T 2c6q_A 132 QVKYICLDVAN----G-----YSEHFVEFVKDVRKR-------FPQHTIMAGNVV--T----GEMVEEL--ILSGADIIK 187 (351)
T ss_dssp TCCEEEEECSC----T-----TBHHHHHHHHHHHHH-------CTTSEEEEEEEC--S----HHHHHHH--HHTTCSEEE
T ss_pred CCCEEEEEecC----C-----CcHHHHHHHHHHHHh-------cCCCeEEEEeCC--C----HHHHHHH--HHhCCCEEE
Confidence 48898887642 1 233456777777776 4 7899988432 3 2346777 899999998
Q ss_pred EecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 214 VSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 214 ~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
+++.... .... ....|+ +.+ ....+..+.+..+..+ +|||+.|||+++.|+.++|.+||++|++||+++.
T Consensus 188 v~~g~G~-~~~~-----r~~~g~-~~p-~~~~l~~v~~~~~~~~--ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~ 257 (351)
T 2c6q_A 188 VGIGPGS-VCTT-----RKKTGV-GYP-QLSAVMECADAAHGLK--GHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAG 257 (351)
T ss_dssp ECSSCST-TBCH-----HHHHCB-CCC-HHHHHHHHHHHHHHTT--CEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred ECCCCCc-CcCc-----cccCCC-Ccc-HHHHHHHHHHHHhhcC--CcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhc
Confidence 8753211 0000 000111 111 1122333333333344 9999999999999999999999999999999972
Q ss_pred -----------------------------------------cC-----------chHHHHHHHHHHHHHHHhCCCCHHHH
Q psy5880 294 -----------------------------------------HG-----------PPLVTRIKSELEELLQKEGYNSVSQA 321 (328)
Q Consensus 294 -----------------------------------------~g-----------p~~~~~i~~~l~~~m~~~g~~si~e~ 321 (328)
+| -+++..+..+|+.-|...|++|++||
T Consensus 258 ~~Es~~~~~~~~g~~~k~~~g~~~~~a~~~~~g~~~~~~~~~g~~~~~~~~g~v~~~~~~l~~~l~~~m~~~G~~~i~~l 337 (351)
T 2c6q_A 258 HSESGGELIERDGKKYKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKEL 337 (351)
T ss_dssp BTTSCSCEEEETTEEEEEEECTTBHHHHHHHSSSCCTTCCCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBGGGH
T ss_pred CccCcchhhhhcCeeeeeccccccHhhhhcccccccccccccceEEEeeccCcHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 23 14688899999999999999999999
Q ss_pred hcc
Q psy5880 322 VGA 324 (328)
Q Consensus 322 ~G~ 324 (328)
+..
T Consensus 338 ~~~ 340 (351)
T 2c6q_A 338 SRR 340 (351)
T ss_dssp HHH
T ss_pred hhC
Confidence 764
No 57
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.35 E-value=1.8e-11 Score=120.12 Aligned_cols=167 Identities=16% Similarity=0.185 Sum_probs=114.8
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.+.++.+..++ +|.|++|.+|++. ..+.+.++.+++.. .++||++.-. .+ .+.++.+
T Consensus 231 ~~~a~~l~~aG--~d~I~id~a~g~~---------~~~~~~v~~i~~~~------p~~~Vi~g~v--~t----~e~a~~l 287 (490)
T 4avf_A 231 GERVAALVAAG--VDVVVVDTAHGHS---------KGVIERVRWVKQTF------PDVQVIGGNI--AT----AEAAKAL 287 (490)
T ss_dssp HHHHHHHHHTT--CSEEEEECSCCSB---------HHHHHHHHHHHHHC------TTSEEEEEEE--CS----HHHHHHH
T ss_pred HHHHHHHhhcc--cceEEecccCCcc---------hhHHHHHHHHHHHC------CCceEEEeee--Cc----HHHHHHH
Confidence 33444444454 9999999998763 23567777777762 3789998621 12 2456778
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC-CCccEEEecCCCCHHHHHHHHHhc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK-GKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~-~~ipvia~GGI~s~~da~~~l~~G 281 (328)
.++|+|+|.+..+..+ ..+. ....|+.. ..+..+.++++.++ .++|||+.|||++++|+.+++.+|
T Consensus 288 --~~aGaD~I~vg~g~Gs-~~~t-----~~~~g~g~-----p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~G 354 (490)
T 4avf_A 288 --AEAGADAVKVGIGPGS-ICTT-----RIVAGVGV-----PQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAG 354 (490)
T ss_dssp --HHTTCSEEEECSSCST-TCHH-----HHHTCBCC-----CHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHT
T ss_pred --HHcCCCEEEECCCCCc-CCCc-----cccCCCCc-----cHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcC
Confidence 8999999988532211 0000 00112211 13466666666542 249999999999999999999999
Q ss_pred cCeeeehhHHhhc-------------------C-----------------------------------------c--hHH
Q psy5880 282 ASLVQIYTSFVYH-------------------G-----------------------------------------P--PLV 299 (328)
Q Consensus 282 Ad~V~vg~a~l~~-------------------g-----------------------------------------p--~~~ 299 (328)
|++||+||+|+.. | + +++
T Consensus 355 Ad~V~vGs~~~~~~Esp~~~~~~~g~~~k~~~gm~s~~a~~~~~~~~~r~~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~ 434 (490)
T 4avf_A 355 AYCVMMGSMFAGTEEAPGEIELFQGRSYKSYRGMGSLGAMSGSQGSSDRYFQDASAGAEKLVPEGIEGRVPYKGALSAIV 434 (490)
T ss_dssp CSEEEECTTTTTBTTSSSCEEEETTEEEEC---------------------------------------CBCCBCHHHHH
T ss_pred CCeeeecHHHhcCCCCCCceEeECCeEeeeecCcccHHHHhhcccccchhhcccccccccccCCCcEEcCCcCCCHHHHH
Confidence 9999999987520 0 1 467
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 300 TRIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 300 ~~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
..+..+|+.-|.-.|+++|.||+.++
T Consensus 435 ~~~~~~lr~~~~~~g~~~i~~l~~~~ 460 (490)
T 4avf_A 435 HQLMGGLRAAMGYTGSADIQQMRTQP 460 (490)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHhCC
Confidence 88889999999999999999998754
No 58
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.35 E-value=2.8e-11 Score=118.98 Aligned_cols=167 Identities=17% Similarity=0.216 Sum_probs=111.4
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.+.+..+..++ +|++++|+.. | ++....+.++++++.. .++||+++-. .+. +-++.+
T Consensus 239 ~~~a~~l~~aG--vd~v~i~~~~----G-----~~~~~~e~i~~i~~~~------p~~pvi~g~~--~t~----e~a~~l 295 (494)
T 1vrd_A 239 MERVEKLVKAG--VDVIVIDTAH----G-----HSRRVIETLEMIKADY------PDLPVVAGNV--ATP----EGTEAL 295 (494)
T ss_dssp HHHHHHHHHTT--CSEEEECCSC----C-----SSHHHHHHHHHHHHHC------TTSCEEEEEE--CSH----HHHHHH
T ss_pred HHHHHHHHHhC--CCEEEEEecC----C-----chHHHHHHHHHHHHHC------CCceEEeCCc--CCH----HHHHHH
Confidence 34444455554 9999997762 1 2234567778877762 2689998632 332 335777
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhcc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGA 282 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GA 282 (328)
.++|+|+|++++...+ .... ....++..+. ...+..+.+..+.++ +|||++|||++++|+.+++.+||
T Consensus 296 --~~~G~d~I~v~~~~G~-~~~~-----~~~~~~g~p~--~~~l~~v~~~~~~~~--ipvia~GGI~~~~di~kala~GA 363 (494)
T 1vrd_A 296 --IKAGADAVKVGVGPGS-ICTT-----RVVAGVGVPQ--LTAVMECSEVARKYD--VPIIADGGIRYSGDIVKALAAGA 363 (494)
T ss_dssp --HHTTCSEEEECSSCST-TCHH-----HHHHCCCCCH--HHHHHHHHHHHHTTT--CCEEEESCCCSHHHHHHHHHTTC
T ss_pred --HHcCCCEEEEcCCCCc-cccc-----cccCCCCccH--HHHHHHHHHHHhhcC--CCEEEECCcCCHHHHHHHHHcCC
Confidence 8999999999654321 0000 0011121221 123344444443344 99999999999999999999999
Q ss_pred CeeeehhHHhh----------------------------------------------cC-----------chHHHHHHHH
Q psy5880 283 SLVQIYTSFVY----------------------------------------------HG-----------PPLVTRIKSE 305 (328)
Q Consensus 283 d~V~vg~a~l~----------------------------------------------~g-----------p~~~~~i~~~ 305 (328)
|+|++||+++. +| ..++..+..+
T Consensus 364 d~V~iGr~~l~~~e~~~~~~~~~~~~~k~~~g~~~~~a~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~l~~~ 443 (494)
T 1vrd_A 364 ESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENKFVPEGIEGMVPYKGTVKDVVHQLVGG 443 (494)
T ss_dssp SEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC-------------------------CBCCEECCBCHHHHHHHHHHH
T ss_pred CEEEECHHHhcCCcCCcceEEECCEEEEEEeccchHHHHhhccccchhhcccccccCCcceEccCcCCCHHHHHHHHHHH
Confidence 99999999961 22 1568888999
Q ss_pred HHHHHHHhCCCCHHHHhcc
Q psy5880 306 LEELLQKEGYNSVSQAVGA 324 (328)
Q Consensus 306 l~~~m~~~g~~si~e~~G~ 324 (328)
|+..|...|++++++|...
T Consensus 444 l~~~~~~~G~~~~~~l~~~ 462 (494)
T 1vrd_A 444 LRSGMGYIGARTIKELQEK 462 (494)
T ss_dssp HHHHHHHHTCSSHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHhh
Confidence 9999999999999999764
No 59
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.33 E-value=3.3e-11 Score=118.30 Aligned_cols=165 Identities=17% Similarity=0.200 Sum_probs=113.0
Q ss_pred HHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhcc
Q psy5880 125 SVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLD 204 (328)
Q Consensus 125 ~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~ 204 (328)
.++.+..++ +|.|++|.+||+. ..+.+.++++++.. .++||++.-.. + .+.++.+
T Consensus 235 ~a~~l~~aG--~d~I~id~a~g~~---------~~~~~~i~~ir~~~------p~~~Vi~g~v~--t----~e~a~~l-- 289 (496)
T 4fxs_A 235 RVKALVEAG--VDVLLIDSSHGHS---------EGVLQRIRETRAAY------PHLEIIGGNVA--T----AEGARAL-- 289 (496)
T ss_dssp HHHHHHHTT--CSEEEEECSCTTS---------HHHHHHHHHHHHHC------TTCCEEEEEEC--S----HHHHHHH--
T ss_pred HHHHHHhcc--CceEEeccccccc---------hHHHHHHHHHHHHC------CCceEEEcccC--c----HHHHHHH--
Confidence 344444444 9999999998764 23567777777762 37899985221 2 3456778
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC-CCccEEEecCCCCHHHHHHHHHhccC
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK-GKLPIIGVGGVFSGKDAFEKIKAGAS 283 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~-~~ipvia~GGI~s~~da~~~l~~GAd 283 (328)
.++|+|+|.+.++..+.- .. ....|+..+ .+..+.++.+.++ .++|||+.|||++++|+.+++.+|||
T Consensus 290 ~~aGaD~I~Vg~g~Gs~~-~t-----r~~~g~g~p-----~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd 358 (496)
T 4fxs_A 290 IEAGVSAVKVGIGPGSIC-TT-----RIVTGVGVP-----QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGAS 358 (496)
T ss_dssp HHHTCSEEEECSSCCTTB-CH-----HHHHCCCCC-----HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCS
T ss_pred HHhCCCEEEECCCCCcCc-cc-----ccccCCCcc-----HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 899999998864322100 00 000112111 2345555554331 13999999999999999999999999
Q ss_pred eeeehhHHhhc---------------------------------------------------------Cc--hHHHHHHH
Q psy5880 284 LVQIYTSFVYH---------------------------------------------------------GP--PLVTRIKS 304 (328)
Q Consensus 284 ~V~vg~a~l~~---------------------------------------------------------gp--~~~~~i~~ 304 (328)
+|++||+|+.. |+ +++..+..
T Consensus 359 ~V~iGs~f~~t~Espg~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~ 438 (496)
T 4fxs_A 359 CVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMG 438 (496)
T ss_dssp EEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSHHHHHSSSCCSTTTC---CCCCCCSBCEEEEECCBCHHHHHHHHHH
T ss_pred eEEecHHHhcCCCCCcceeeeCCeEeeeecccchHHHHhccccccccccccccccccCCccEEeCCCCCCHHHHHHHHHH
Confidence 99999987521 11 56889999
Q ss_pred HHHHHHHHhCCCCHHHHhccc
Q psy5880 305 ELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 305 ~l~~~m~~~g~~si~e~~G~~ 325 (328)
+|+.-|.-.|+++|.||+-++
T Consensus 439 ~l~~~~~~~g~~~i~~l~~~~ 459 (496)
T 4fxs_A 439 GLRSCMGLTGSATVEDLRTKA 459 (496)
T ss_dssp HHHHHHHHHTCSBHHHHHHHC
T ss_pred HHHHHHHhcCcCcHHHHHhCC
Confidence 999999999999999998643
No 60
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=99.33 E-value=9.9e-11 Score=110.35 Aligned_cols=166 Identities=19% Similarity=0.200 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.+.++.+..++ +|+|++|.+.. ++..+.+.++.+++. .++||+++-.. + .+.++.+
T Consensus 107 ~e~a~~l~eaG--ad~I~ld~a~G---------~~~~~~~~i~~i~~~-------~~~~Vivg~v~--t----~e~A~~l 162 (361)
T 3khj_A 107 IERAKLLVEAG--VDVIVLDSAHG---------HSLNIIRTLKEIKSK-------MNIDVIVGNVV--T----EEATKEL 162 (361)
T ss_dssp HHHHHHHHHTT--CSEEEECCSCC---------SBHHHHHHHHHHHHH-------CCCEEEEEEEC--S----HHHHHHH
T ss_pred HHHHHHHHHcC--cCeEEEeCCCC---------CcHHHHHHHHHHHHh-------cCCcEEEccCC--C----HHHHHHH
Confidence 56666666666 99999987632 224456667777765 57899986432 2 3456778
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhcc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGA 282 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GA 282 (328)
.++|+|+|.++.+... .... ....|. |.+. ...+..+.++.+.++ +|||+.|||.+++|+.+++.+||
T Consensus 163 --~~aGaD~I~VG~~~Gs-~~~t-----r~~~g~-g~p~-~~~i~~v~~~~~~~~--iPVIA~GGI~~~~di~kala~GA 230 (361)
T 3khj_A 163 --IENGADGIKVGIGPGS-ICTT-----RIVAGV-GVPQ-ITAIEKCSSVASKFG--IPIIADGGIRYSGDIGKALAVGA 230 (361)
T ss_dssp --HHTTCSEEEECSSCCT-TCCH-----HHHTCB-CCCH-HHHHHHHHHHHHHHT--CCEEEESCCCSHHHHHHHHHHTC
T ss_pred --HHcCcCEEEEecCCCc-CCCc-----ccccCC-CCCc-HHHHHHHHHHHhhcC--CeEEEECCCCCHHHHHHHHHcCC
Confidence 8999999988432111 0000 000111 1111 122333333344455 99999999999999999999999
Q ss_pred CeeeehhHHhhc-------------------C--------------------------c--------------hHHHHHH
Q psy5880 283 SLVQIYTSFVYH-------------------G--------------------------P--------------PLVTRIK 303 (328)
Q Consensus 283 d~V~vg~a~l~~-------------------g--------------------------p--------------~~~~~i~ 303 (328)
|+|++||+|+.. | | +++..+.
T Consensus 231 d~V~vGs~~~~t~Esp~~~~~~~g~~~k~y~gm~s~~a~~~~~~~~y~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~ 310 (361)
T 3khj_A 231 SSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLV 310 (361)
T ss_dssp SEEEESTTTTTBTTSSCEEEEETTEEEEEC---------------------------------CEEECCBCHHHHHHHHH
T ss_pred CEEEEChhhhcCCcCCcchhhcCCeEEEEeeccchHHHHhccchhhhhcccccccccCCCccEEeCCCCCCHHHHHHHHH
Confidence 999999987621 1 0 3456777
Q ss_pred HHHHHHHHHhCCCCHHHHhcc
Q psy5880 304 SELEELLQKEGYNSVSQAVGA 324 (328)
Q Consensus 304 ~~l~~~m~~~g~~si~e~~G~ 324 (328)
.+|+.-|.-.|.++|.||+-+
T Consensus 311 ~gl~~~~~~~g~~~~~~~~~~ 331 (361)
T 3khj_A 311 GGLRSCMGYLGSASIEELWKK 331 (361)
T ss_dssp HHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHhhhhcCCccHHHHHhC
Confidence 788889999999999999754
No 61
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=99.28 E-value=1.6e-10 Score=107.75 Aligned_cols=125 Identities=17% Similarity=0.215 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
..++++.+.+.+ +|+|.+|+.+| .++++.+++ .++|+++++.. .+.++.
T Consensus 85 ~~~~~~~~~~~g--~d~V~~~~g~p--------------~~~~~~l~~--------~gi~vi~~v~t-------~~~a~~ 133 (328)
T 2gjl_A 85 YAEYRAAIIEAG--IRVVETAGNDP--------------GEHIAEFRR--------HGVKVIHKCTA-------VRHALK 133 (328)
T ss_dssp HHHHHHHHHHTT--CCEEEEEESCC--------------HHHHHHHHH--------TTCEEEEEESS-------HHHHHH
T ss_pred HHHHHHHHHhcC--CCEEEEcCCCc--------------HHHHHHHHH--------cCCCEEeeCCC-------HHHHHH
Confidence 566777777776 99999998875 134444444 36899987642 233556
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+ .++|+|+|.+.+... ||..|.. ....++.++++++.++ +||++.|||++++++.+++.+|
T Consensus 134 ~--~~~GaD~i~v~g~~~--------------GG~~G~~-~~~~~~~l~~v~~~~~--iPviaaGGI~~~~~v~~al~~G 194 (328)
T 2gjl_A 134 A--ERLGVDAVSIDGFEC--------------AGHPGED-DIPGLVLLPAAANRLR--VPIIASGGFADGRGLVAALALG 194 (328)
T ss_dssp H--HHTTCSEEEEECTTC--------------SBCCCSS-CCCHHHHHHHHHTTCC--SCEEEESSCCSHHHHHHHHHHT
T ss_pred H--HHcCCCEEEEECCCC--------------CcCCCCc-cccHHHHHHHHHHhcC--CCEEEECCCCCHHHHHHHHHcC
Confidence 7 789999999876432 4444432 1235678888888776 9999999999999999999999
Q ss_pred cCeeeehhHHhhcCch
Q psy5880 282 ASLVQIYTSFVYHGPP 297 (328)
Q Consensus 282 Ad~V~vg~a~l~~gp~ 297 (328)
||+|++||+++.. ++
T Consensus 195 AdgV~vGs~~~~~-~e 209 (328)
T 2gjl_A 195 ADAINMGTRFLAT-RE 209 (328)
T ss_dssp CSEEEESHHHHTS-SS
T ss_pred CCEEEECHHHHcC-cc
Confidence 9999999999853 54
No 62
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=99.26 E-value=7.6e-11 Score=109.85 Aligned_cols=121 Identities=22% Similarity=0.358 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
..+.++.+...+ +|+|.+|+.||. ++++.+++ .++|++++++. .+.++.
T Consensus 91 ~~~~~~~~~~~g--~d~V~l~~g~p~--------------~~~~~l~~--------~g~~v~~~v~s-------~~~a~~ 139 (326)
T 3bo9_A 91 ADDLVKVCIEEK--VPVVTFGAGNPT--------------KYIRELKE--------NGTKVIPVVAS-------DSLARM 139 (326)
T ss_dssp HHHHHHHHHHTT--CSEEEEESSCCH--------------HHHHHHHH--------TTCEEEEEESS-------HHHHHH
T ss_pred HHHHHHHHHHCC--CCEEEECCCCcH--------------HHHHHHHH--------cCCcEEEEcCC-------HHHHHH
Confidence 466667776666 999999988762 23344443 46899988743 234566
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+ .++|+|+|.+.+... ||.+|. ...++.+.++++.++ +|||+.|||++++|+.+++.+|
T Consensus 140 a--~~~GaD~i~v~g~~~--------------GG~~G~---~~~~~ll~~i~~~~~--iPviaaGGI~~~~dv~~al~~G 198 (326)
T 3bo9_A 140 V--ERAGADAVIAEGMES--------------GGHIGE---VTTFVLVNKVSRSVN--IPVIAAGGIADGRGMAAAFALG 198 (326)
T ss_dssp H--HHTTCSCEEEECTTS--------------SEECCS---SCHHHHHHHHHHHCS--SCEEEESSCCSHHHHHHHHHHT
T ss_pred H--HHcCCCEEEEECCCC--------------CccCCC---ccHHHHHHHHHHHcC--CCEEEECCCCCHHHHHHHHHhC
Confidence 7 789999999987532 444442 235688888888876 9999999999999999999999
Q ss_pred cCeeeehhHHhhc
Q psy5880 282 ASLVQIYTSFVYH 294 (328)
Q Consensus 282 Ad~V~vg~a~l~~ 294 (328)
|++|++||+++..
T Consensus 199 A~gV~vGs~~~~~ 211 (326)
T 3bo9_A 199 AEAVQMGTRFVAS 211 (326)
T ss_dssp CSEEEESHHHHTB
T ss_pred CCEEEechHHHcC
Confidence 9999999999854
No 63
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.24 E-value=1.9e-10 Score=113.24 Aligned_cols=162 Identities=14% Similarity=0.180 Sum_probs=109.1
Q ss_pred HHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhcc
Q psy5880 125 SVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLD 204 (328)
Q Consensus 125 ~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~ 204 (328)
.++.+.+++ +|.+++|..+|+. ..+.+.++++++.. .++|++++--. + .+.++.+
T Consensus 260 ra~aLveaG--vd~I~Id~a~g~~---------~~v~~~i~~i~~~~------~~~~vi~g~v~--t----~e~a~~~-- 314 (511)
T 3usb_A 260 RIDALVKAS--VDAIVLDTAHGHS---------QGVIDKVKEVRAKY------PSLNIIAGNVA--T----AEATKAL-- 314 (511)
T ss_dssp HHHHHHHTT--CSEEEEECSCTTS---------HHHHHHHHHHHHHC------TTSEEEEEEEC--S----HHHHHHH--
T ss_pred HHHHHHhhc--cceEEecccccch---------hhhhhHHHHHHHhC------CCceEEeeeec--c----HHHHHHH--
Confidence 344444555 9999999887654 23556777777652 35799986432 2 3457778
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHH---HHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEM---YKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i---~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
.++|+|+|.+..+..+ ..+ .....|+..+ .+..+.++ .+.++ +|||+.|||.+++|+.+++.+|
T Consensus 315 ~~aGad~i~vg~g~gs-i~~-----~~~~~g~g~p-----~~~~l~~v~~~~~~~~--iPVIa~GGI~~~~di~kala~G 381 (511)
T 3usb_A 315 IEAGANVVKVGIGPGS-ICT-----TRVVAGVGVP-----QLTAVYDCATEARKHG--IPVIADGGIKYSGDMVKALAAG 381 (511)
T ss_dssp HHHTCSEEEECSSCST-TCC-----HHHHHCCCCC-----HHHHHHHHHHHHHTTT--CCEEEESCCCSHHHHHHHHHTT
T ss_pred HHhCCCEEEECCCCcc-ccc-----cccccCCCCC-----cHHHHHHHHHHHHhCC--CcEEEeCCCCCHHHHHHHHHhC
Confidence 8999999987432211 000 0001122222 23344444 33344 9999999999999999999999
Q ss_pred cCeeeehhHHhhc-------------------------------------------------------Cc--hHHHHHHH
Q psy5880 282 ASLVQIYTSFVYH-------------------------------------------------------GP--PLVTRIKS 304 (328)
Q Consensus 282 Ad~V~vg~a~l~~-------------------------------------------------------gp--~~~~~i~~ 304 (328)
|++|++||+|+.. |+ .++..+..
T Consensus 382 A~~V~vGs~~~~~~es~g~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~~~ 461 (511)
T 3usb_A 382 AHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKGSKDRYFQEGNKKLVPEGIEGRVPYKGPLADTVHQLVG 461 (511)
T ss_dssp CSEEEESTTTTTBTTSSSCEEECSSSEEEC----------------------------------CBCCBCHHHHHHHHHH
T ss_pred chhheecHHHhcCccCchhhhhccCeeeeeeeccccHHHHhcccccchhccccccccCCCcEEeCCCCCCHHHHHHHHHH
Confidence 9999999987310 00 45778889
Q ss_pred HHHHHHHHhCCCCHHHHhcc
Q psy5880 305 ELEELLQKEGYNSVSQAVGA 324 (328)
Q Consensus 305 ~l~~~m~~~g~~si~e~~G~ 324 (328)
+|+.-|...|++++.||+-+
T Consensus 462 ~lr~~m~~~G~~~i~~l~~~ 481 (511)
T 3usb_A 462 GLRAGMGYCGAQDLEFLREN 481 (511)
T ss_dssp HHHHHHHHTTCSBHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHhC
Confidence 99999999999999999754
No 64
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=99.20 E-value=2.5e-11 Score=112.16 Aligned_cols=81 Identities=25% Similarity=0.315 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCCCccEE--EecCCCCHHHHHHHHHhccCeeeehhHHhhc-Cc-hHHHHHHHHHHHHHHHhCCCCHHH
Q psy5880 245 STELISEMYKLTKGKLPII--GVGGVFSGKDAFEKIKAGASLVQIYTSFVYH-GP-PLVTRIKSELEELLQKEGYNSVSQ 320 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvi--a~GGI~s~~da~~~l~~GAd~V~vg~a~l~~-gp-~~~~~i~~~l~~~m~~~g~~si~e 320 (328)
.+++++++++.++ +||+ ++|||.|++|+.+++++|||+|++||+++.. +| ..++++.+.+..|++.+++.++++
T Consensus 195 ~~~~i~~i~~~~~--iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 272 (305)
T 2nv1_A 195 PYELLLQIKKDGK--LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTHFTDYKLIAELSK 272 (305)
T ss_dssp CHHHHHHHHHHTS--CSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTTTCHHHHHHHTS
T ss_pred cHHHHHHHHHhcC--CCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCCHHHHHHHHHHHHHHhcChhhHHHHHH
Confidence 4677888888765 9999 9999999999999999999999999999853 46 478899999999999999988999
Q ss_pred Hhccccc
Q psy5880 321 AVGAAHK 327 (328)
Q Consensus 321 ~~G~~~~ 327 (328)
++|.+.+
T Consensus 273 ~~g~~~~ 279 (305)
T 2nv1_A 273 ELGTAMK 279 (305)
T ss_dssp CC-----
T ss_pred Hhhhhhc
Confidence 9886654
No 65
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=99.19 E-value=5.3e-10 Score=106.32 Aligned_cols=165 Identities=18% Similarity=0.200 Sum_probs=109.3
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.+.++.+.+++ +|.|.++.+..+ +..+.+.++.+++. .++||+++... + .+.++.+
T Consensus 146 ~e~~~~lveaG--vdvIvldta~G~---------~~~~~e~I~~ik~~-------~~i~Vi~g~V~--t----~e~A~~a 201 (400)
T 3ffs_A 146 IERAKLLVEAG--VDVIVLDSAHGH---------SLNIIRTLKEIKSK-------MNIDVIVGNVV--T----EEATKEL 201 (400)
T ss_dssp CHHHHHHHHHT--CSEEEECCSCCS---------BHHHHHHHHHHHTT-------CCCEEEEEEEC--S----HHHHHHH
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCC---------cccHHHHHHHHHhc-------CCCeEEEeecC--C----HHHHHHH
Confidence 56677777777 999998766322 23355666666654 47899986332 2 3456778
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC-CCccEEEecCCCCHHHHHHHHHhc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK-GKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~-~~ipvia~GGI~s~~da~~~l~~G 281 (328)
.++|+|+|.+..+ .+...+. ....+. |. ..+..+.++++.++ .++|||+.|||.+++|+.+++.+|
T Consensus 202 --~~aGAD~I~vG~g-~Gs~~~t-----r~~~g~-g~----p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalG 268 (400)
T 3ffs_A 202 --IENGADGIKVGIG-PGSICTT-----RIVAGV-GV----PQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVG 268 (400)
T ss_dssp --HHTTCSEEEECC---------------CCSCB-CC----CHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTT
T ss_pred --HHcCCCEEEEeCC-CCcCccc-----cccccc-ch----hHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcC
Confidence 8999999988432 1100000 000111 11 13455666665432 249999999999999999999999
Q ss_pred cCeeeehhHHhh-------------------cC--------------------------c--------------hHHHHH
Q psy5880 282 ASLVQIYTSFVY-------------------HG--------------------------P--------------PLVTRI 302 (328)
Q Consensus 282 Ad~V~vg~a~l~-------------------~g--------------------------p--------------~~~~~i 302 (328)
|++||+||+|+. .| | +++..+
T Consensus 269 Ad~V~vGt~f~~t~Es~~~~~~~~g~~~k~y~Gm~s~~am~~~~~~ry~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~~ 348 (400)
T 3ffs_A 269 ASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQL 348 (400)
T ss_dssp CSEEEECGGGTTBTTSSCCEEESSSSEEEC-----------------------------------CEECCBCHHHHHHHH
T ss_pred CCEEEEChHHhcCCCCCchhhhcCCeeeeeecCcchHHHHhccccchhhcccccccccCCCCcEEecCCCCCHHHHHHHH
Confidence 999999998861 11 1 345677
Q ss_pred HHHHHHHHHHhCCCCHHHHhcc
Q psy5880 303 KSELEELLQKEGYNSVSQAVGA 324 (328)
Q Consensus 303 ~~~l~~~m~~~g~~si~e~~G~ 324 (328)
..+|+.-|.-.|.++|.||+-+
T Consensus 349 ~~glr~~~~y~G~~~i~el~~~ 370 (400)
T 3ffs_A 349 VGGLRSCMGYLGSASIEELWKK 370 (400)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHhhhhcCcccHHHHHhC
Confidence 7888899999999999999754
No 66
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=99.15 E-value=5.4e-10 Score=105.80 Aligned_cols=129 Identities=17% Similarity=0.242 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+.+.++.+.+.+ +|++.+|+.||.. ++++.+++ .++|+++++. +. +.++
T Consensus 110 ~~~~~~~~~~~~g--~~~V~~~~g~~~~-------------~~i~~~~~--------~g~~v~~~v~---t~----~~a~ 159 (369)
T 3bw2_A 110 GYDAKLAVLLDDP--VPVVSFHFGVPDR-------------EVIARLRR--------AGTLTLVTAT---TP----EEAR 159 (369)
T ss_dssp THHHHHHHHHHSC--CSEEEEESSCCCH-------------HHHHHHHH--------TTCEEEEEES---SH----HHHH
T ss_pred cHHHHHHHHHhcC--CCEEEEeCCCCcH-------------HHHHHHHH--------CCCeEEEECC---CH----HHHH
Confidence 3566777777776 9999999998741 33444443 3679999874 22 2356
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCc-------CchH-HHHHHHHHHHHcCCCccEEEecCCCCHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEP-------LRNK-STELISEMYKLTKGKLPIIGVGGVFSGK 272 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~-------~~~~-~l~~v~~i~~~~~~~ipvia~GGI~s~~ 272 (328)
.+ .++|+|+|.+.+... ||+.|.. ..|. .+..++++++.++ +|||+.|||.+++
T Consensus 160 ~a--~~~GaD~i~v~g~~~--------------GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~--iPViaaGGI~~~~ 221 (369)
T 3bw2_A 160 AV--EAAGADAVIAQGVEA--------------GGHQGTHRDSSEDDGAGIGLLSLLAQVREAVD--IPVVAAGGIMRGG 221 (369)
T ss_dssp HH--HHTTCSEEEEECTTC--------------SEECCCSSCCGGGTTCCCCHHHHHHHHHHHCS--SCEEEESSCCSHH
T ss_pred HH--HHcCCCEEEEeCCCc--------------CCcCCCcccccccccccccHHHHHHHHHHhcC--ceEEEECCCCCHH
Confidence 67 789999999976542 2222211 0001 3678888888876 9999999999999
Q ss_pred HHHHHHHhccCeeeehhHHhhcCchH
Q psy5880 273 DAFEKIKAGASLVQIYTSFVYHGPPL 298 (328)
Q Consensus 273 da~~~l~~GAd~V~vg~a~l~~gp~~ 298 (328)
++.+++.+|||+|++||+++. .|++
T Consensus 222 ~~~~~l~~GAd~V~vGs~~~~-~~e~ 246 (369)
T 3bw2_A 222 QIAAVLAAGADAAQLGTAFLA-TDES 246 (369)
T ss_dssp HHHHHHHTTCSEEEESHHHHT-STTC
T ss_pred HHHHHHHcCCCEEEEChHHhC-Cccc
Confidence 999999999999999999985 4665
No 67
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=99.11 E-value=2.1e-09 Score=101.25 Aligned_cols=166 Identities=17% Similarity=0.188 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
..+.++.+.+++ +|+|++|.+.- ++....+.++.+++.. .++||++.-.. + .+.++.
T Consensus 109 ~~~~~~~lieaG--vd~I~idta~G---------~~~~~~~~I~~ik~~~------p~v~Vi~G~v~--t----~e~A~~ 165 (366)
T 4fo4_A 109 NEERVKALVEAG--VDVLLIDSSHG---------HSEGVLQRIRETRAAY------PHLEIIGGNVA--T----AEGARA 165 (366)
T ss_dssp CHHHHHHHHHTT--CSEEEEECSCT---------TSHHHHHHHHHHHHHC------TTCEEEEEEEC--S----HHHHHH
T ss_pred HHHHHHHHHhCC--CCEEEEeCCCC---------CCHHHHHHHHHHHHhc------CCCceEeeeeC--C----HHHHHH
Confidence 355666677776 99999886521 1234556666666651 37888875222 2 344677
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHH---HcCCCccEEEecCCCCHHHHHHHH
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYK---LTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~---~~~~~ipvia~GGI~s~~da~~~l 278 (328)
+ .++|+|+|.+... .+...+.. ...+ .|. ..+..+.++++ .++ +|||+.|||.+++|+.+++
T Consensus 166 a--~~aGAD~I~vG~g-pGs~~~tr-----~~~g-~g~----p~~~~l~~v~~~~~~~~--iPVIA~GGI~~~~di~kal 230 (366)
T 4fo4_A 166 L--IEAGVSAVKVGIG-PGSICTTR-----IVTG-VGV----PQITAIADAAGVANEYG--IPVIADGGIRFSGDISKAI 230 (366)
T ss_dssp H--HHHTCSEEEECSS-CSTTBCHH-----HHHC-CCC----CHHHHHHHHHHHHGGGT--CCEEEESCCCSHHHHHHHH
T ss_pred H--HHcCCCEEEEecC-CCCCCCcc-----cccC-ccc----chHHHHHHHHHHHhhcC--CeEEEeCCCCCHHHHHHHH
Confidence 7 8999999988311 11000000 0000 111 12344555544 445 9999999999999999999
Q ss_pred HhccCeeeehhHHhhc---------------------------------------------------------Cc--hHH
Q psy5880 279 KAGASLVQIYTSFVYH---------------------------------------------------------GP--PLV 299 (328)
Q Consensus 279 ~~GAd~V~vg~a~l~~---------------------------------------------------------gp--~~~ 299 (328)
.+|||+|++||+|+.. |+ +++
T Consensus 231 a~GAd~V~vGs~f~~t~Esp~~~~~~~g~~~k~y~gm~s~~am~~~~~~ry~~~~~~~~~~~~eg~~~~v~~~g~~~~~~ 310 (366)
T 4fo4_A 231 AAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYFQTDNAADKLVPEGIEGRIAYKGHLKEII 310 (366)
T ss_dssp HTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHCC---------------CCCSBCEEEEECCBCHHHHH
T ss_pred HcCCCEEEEChHhhcCCCCCchhhhhCCceeEEeeccccHHHHhcccccchhccccccccccCCCcEEecCCCCCHHHHH
Confidence 9999999999987610 01 356
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 300 TRIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 300 ~~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
..+..+|+.-|.-.|.++|.||+-++
T Consensus 311 ~~~~~glr~~~~y~g~~~~~~~~~~~ 336 (366)
T 4fo4_A 311 HQQMGGLRSCMGLTGSATVEDLRTKA 336 (366)
T ss_dssp HHHHHHHHHHHHHHTCSBHHHHHHHC
T ss_pred HHHHHHHHHhhhccCcccHHHHHhCC
Confidence 78888999999999999999997643
No 68
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=99.11 E-value=3.5e-11 Score=110.69 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCCCccEE--EecCCCCHHHHHHHHHhccCeeeehhHHhhc-Cc-hHHHHHHHHHHHHHHHhCCCCHHH
Q psy5880 245 STELISEMYKLTKGKLPII--GVGGVFSGKDAFEKIKAGASLVQIYTSFVYH-GP-PLVTRIKSELEELLQKEGYNSVSQ 320 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvi--a~GGI~s~~da~~~l~~GAd~V~vg~a~l~~-gp-~~~~~i~~~l~~~m~~~g~~si~e 320 (328)
.++.++++++..+ +|++ +.|||+|++++.+++++|||+|++||+++.. +| ..++++++.+..|+..+++.+++|
T Consensus 195 ~~~~i~~l~~~~~--~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~dp~~~~~~l~~~i~~~~~~~~~~~~~~ 272 (297)
T 2zbt_A 195 PFELVKWVHDHGR--LPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVAHYNDPEVLAEVSE 272 (297)
T ss_dssp CHHHHHHHHHHSS--CSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred hHHHHHHHHHhcC--CCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHHHhchHhhhHHHH
Confidence 3677888888765 8988 9999999999999999999999999999742 45 468888888899999999999999
Q ss_pred Hhcccc
Q psy5880 321 AVGAAH 326 (328)
Q Consensus 321 ~~G~~~ 326 (328)
++|.++
T Consensus 273 ~~g~~~ 278 (297)
T 2zbt_A 273 DLGEPM 278 (297)
T ss_dssp TCCCCC
T ss_pred hcCcee
Confidence 999764
No 69
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=99.10 E-value=1.5e-09 Score=96.91 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcccccEEEEc--cCCCCCcchhh-------hh---hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC
Q psy5880 123 LDSVKGILKFGDVAHYFVVN--VSSPNTANLRK-------LQ---AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL 190 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN--~scPn~~g~~~-------~~---~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~ 190 (328)
+++.+.++.+.+.+|.||++ +|+|...|... ++ +.....++++++++. .++||.+....+.
T Consensus 19 ~~~~~~a~~~~~~ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~-------~~~pv~~~~~~~~ 91 (248)
T 1geq_A 19 QSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRH-------SSTPIVLMTYYNP 91 (248)
T ss_dssp HHHHHHHHHHGGGBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT-------CCCCEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh-------CCCCEEEEeccch
Confidence 34444444443338999999 78888754211 11 223345566665543 5789888653210
Q ss_pred -ChhhHHHHHHHhccccCCccEEEEecCCccchh---------h------hcc------------ccc-c----ccCCCC
Q psy5880 191 -SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYE---------Y------LDA------------RYK-E----ETGGLS 237 (328)
Q Consensus 191 -~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~---------~------~~~------------~~~-~----~~gg~s 237 (328)
-.....+.++.+ .++|+|+|+++......+. + ..+ ... . ...|..
T Consensus 92 ~~~~~~~~~~~~~--~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d~~i~~~~~~G~~ 169 (248)
T 1geq_A 92 IYRAGVRNFLAEA--KASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTT 169 (248)
T ss_dssp HHHHCHHHHHHHH--HHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC---
T ss_pred hhhcCHHHHHHHH--HHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCCCeEEEEECCccC
Confidence 000124677778 8999999998753221000 0 000 000 0 011222
Q ss_pred CCc--CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 238 GEP--LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 238 g~~--~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
|.. ..+..++.++++++.++ +||++.|||++++++.+++.+|||.|.+||+++.
T Consensus 170 g~~~~~~~~~~~~i~~l~~~~~--~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~ 225 (248)
T 1geq_A 170 GAREEIPKTAYDLLRRAKRICR--NKVAVGFGVSKREHVVSLLKEGANGVVVGSALVK 225 (248)
T ss_dssp ----CCCHHHHHHHHHHHHHCS--SCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred CCCCCCChhHHHHHHHHHhhcC--CCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHh
Confidence 321 23556889999999885 9999999999999999999999999999999974
No 70
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=99.06 E-value=2.3e-09 Score=94.97 Aligned_cols=130 Identities=13% Similarity=0.071 Sum_probs=87.4
Q ss_pred HHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhcccc
Q psy5880 127 KGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSK 206 (328)
Q Consensus 127 ~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~ 206 (328)
+.+..++ +|.+.++.+.-. +++.+.++++.+++ .++++++.+.. .+.++.+ .+
T Consensus 95 ~~~~~~G--ad~V~l~~~~~~--------~p~~l~~~i~~~~~--------~g~~v~~~v~t-------~eea~~a--~~ 147 (232)
T 3igs_A 95 DALAQAG--AAIIAVDGTARQ--------RPVAVEALLARIHH--------HHLLTMADCSS-------VDDGLAC--QR 147 (232)
T ss_dssp HHHHHHT--CSEEEEECCSSC--------CSSCHHHHHHHHHH--------TTCEEEEECCS-------HHHHHHH--HH
T ss_pred HHHHHcC--CCEEEECccccC--------CHHHHHHHHHHHHH--------CCCEEEEeCCC-------HHHHHHH--Hh
Confidence 3455566 999988766311 12346677776664 36788887642 2345667 79
Q ss_pred CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeee
Q psy5880 207 CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286 (328)
Q Consensus 207 ~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~ 286 (328)
+|+|+|.+.++.+.. ++.. ....++.++++++. + +|||+.|||+|++|+.+++++||++|+
T Consensus 148 ~Gad~Ig~~~~g~t~------------~~~~----~~~~~~~i~~l~~~-~--ipvIA~GGI~t~~d~~~~~~~GadgV~ 208 (232)
T 3igs_A 148 LGADIIGTTMSGYTT------------PDTP----EEPDLPLVKALHDA-G--CRVIAEGRYNSPALAAEAIRYGAWAVT 208 (232)
T ss_dssp TTCSEEECTTTTSSS------------SSCC----SSCCHHHHHHHHHT-T--CCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred CCCCEEEEcCccCCC------------CCCC----CCCCHHHHHHHHhc-C--CcEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 999999654332210 0000 11235778888876 4 999999999999999999999999999
Q ss_pred ehhHHhhcCchH-HHHHHH
Q psy5880 287 IYTSFVYHGPPL-VTRIKS 304 (328)
Q Consensus 287 vg~a~l~~gp~~-~~~i~~ 304 (328)
||++++ + |+. .+++.+
T Consensus 209 VGsal~-~-p~~~~~~~~~ 225 (232)
T 3igs_A 209 VGSAIT-R-LEHICGWYND 225 (232)
T ss_dssp ECHHHH-C-HHHHHHHHHH
T ss_pred EehHhc-C-HHHHHHHHHH
Confidence 999997 4 654 344433
No 71
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=99.06 E-value=1.6e-09 Score=95.88 Aligned_cols=125 Identities=10% Similarity=0.031 Sum_probs=85.7
Q ss_pred HHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhcccc
Q psy5880 127 KGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSK 206 (328)
Q Consensus 127 ~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~ 206 (328)
+.+..++ +|.|.++.++-. +++.+.++++.+++ .+.++++.+.. .+.++.+ .+
T Consensus 95 ~~~~~aG--ad~I~l~~~~~~--------~p~~l~~~i~~~~~--------~g~~v~~~v~t-------~eea~~a--~~ 147 (229)
T 3q58_A 95 DALAQAG--ADIIAFDASFRS--------RPVDIDSLLTRIRL--------HGLLAMADCST-------VNEGISC--HQ 147 (229)
T ss_dssp HHHHHHT--CSEEEEECCSSC--------CSSCHHHHHHHHHH--------TTCEEEEECSS-------HHHHHHH--HH
T ss_pred HHHHHcC--CCEEEECccccC--------ChHHHHHHHHHHHH--------CCCEEEEecCC-------HHHHHHH--Hh
Confidence 3455566 999988776411 12346677777665 36788887642 2345667 79
Q ss_pred CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeee
Q psy5880 207 CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286 (328)
Q Consensus 207 ~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~ 286 (328)
+|+|+|.+.++.+.. ++... ...++.++++++. + +|||+.|||+|++|+.+++++||++|+
T Consensus 148 ~Gad~Ig~~~~g~t~------------~~~~~----~~~~~li~~l~~~-~--ipvIA~GGI~t~~d~~~~~~~GadgV~ 208 (229)
T 3q58_A 148 KGIEFIGTTLSGYTG------------PITPV----EPDLAMVTQLSHA-G--CRVIAEGRYNTPALAANAIEHGAWAVT 208 (229)
T ss_dssp TTCSEEECTTTTSSS------------SCCCS----SCCHHHHHHHHTT-T--CCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred CCCCEEEecCccCCC------------CCcCC----CCCHHHHHHHHHc-C--CCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 999999654332210 10111 1235778888776 4 999999999999999999999999999
Q ss_pred ehhHHhhcCchHH
Q psy5880 287 IYTSFVYHGPPLV 299 (328)
Q Consensus 287 vg~a~l~~gp~~~ 299 (328)
||++++ + |+.+
T Consensus 209 VGsai~-~-p~~~ 219 (229)
T 3q58_A 209 VGSAIT-R-IEHI 219 (229)
T ss_dssp ECHHHH-C-HHHH
T ss_pred EchHhc-C-hHHH
Confidence 999997 3 6543
No 72
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=99.02 E-value=1e-10 Score=104.66 Aligned_cols=90 Identities=32% Similarity=0.393 Sum_probs=0.0
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..++++.+ .++|++.|.++++... |.+.|+ .++.++++++.++ +|||++|||+|++|
T Consensus 157 ~~~~~a~~~--~~~G~~~i~~t~~~~~-------------g~~~g~-----~~~~~~~i~~~~~--iPvia~GGI~~~~d 214 (247)
T 3tdn_A 157 LLRDWVVEV--EKRGAGEILLTSIDRD-------------GTKSGY-----DTEMIRFVRPLTT--LPIIASGGAGKMEH 214 (247)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHH--HhcCCCEEEEecccCC-------------CCcCCC-----CHHHHHHHHHhCC--CCEEEECCCCCHHH
Confidence 456788888 8999999988765322 223332 3567888888876 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+.+++++|||+|++||+++ .+|++++++.+.+
T Consensus 215 ~~~~~~~Gad~v~vg~al~-~~p~~~~~~~~~~ 246 (247)
T 3tdn_A 215 FLEAFLRGADKVSINTAAV-ENPSLITQIAQTF 246 (247)
T ss_dssp ---------------------------------
T ss_pred HHHHHHcCCcHhhccHHHH-cCcHHHHHHHHhc
Confidence 9999999999999999997 5799999987643
No 73
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=99.01 E-value=1.2e-08 Score=89.38 Aligned_cols=134 Identities=13% Similarity=0.198 Sum_probs=88.8
Q ss_pred HHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccc
Q psy5880 126 VKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDS 205 (328)
Q Consensus 126 ~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~ 205 (328)
++.+..++ +|.+.++...-..+. ..+.++++.+++.. .++++++.+. +. .+ +..+ .
T Consensus 81 i~~~~~~G--ad~v~l~~~~~~~p~-------~~~~~~i~~~~~~~------~~~~v~~~~~---t~---~e-~~~~--~ 136 (223)
T 1y0e_A 81 VDELIESQ--CEVIALDATLQQRPK-------ETLDELVSYIRTHA------PNVEIMADIA---TV---EE-AKNA--A 136 (223)
T ss_dssp HHHHHHHT--CSEEEEECSCSCCSS-------SCHHHHHHHHHHHC------TTSEEEEECS---SH---HH-HHHH--H
T ss_pred HHHHHhCC--CCEEEEeeecccCcc-------cCHHHHHHHHHHhC------CCceEEecCC---CH---HH-HHHH--H
Confidence 33444555 999998765311100 23467777777752 2677877653 22 23 4456 7
Q ss_pred cCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCee
Q psy5880 206 KCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLV 285 (328)
Q Consensus 206 ~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V 285 (328)
++|+|+|.+++..+. +.-.+.......++.++++++.++ +||++.|||+|++++.+++++|||+|
T Consensus 137 ~~G~d~i~~~~~g~t-------------~~~~~~~~~~~~~~~~~~~~~~~~--ipvia~GGI~~~~~~~~~~~~Gad~v 201 (223)
T 1y0e_A 137 RLGFDYIGTTLHGYT-------------SYTQGQLLYQNDFQFLKDVLQSVD--AKVIAEGNVITPDMYKRVMDLGVHCS 201 (223)
T ss_dssp HTTCSEEECTTTTSS-------------TTSTTCCTTHHHHHHHHHHHHHCC--SEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred HcCCCEEEeCCCcCc-------------CCCCCCCCCcccHHHHHHHHhhCC--CCEEEecCCCCHHHHHHHHHcCCCEE
Confidence 899999876543221 000011112345788899998886 99999999999999999999999999
Q ss_pred eehhHHhhcCchHHH
Q psy5880 286 QIYTSFVYHGPPLVT 300 (328)
Q Consensus 286 ~vg~a~l~~gp~~~~ 300 (328)
++||+++ + |++..
T Consensus 202 ~vG~al~-~-p~~~~ 214 (223)
T 1y0e_A 202 VVGGAIT-R-PKEIT 214 (223)
T ss_dssp EECHHHH-C-HHHHH
T ss_pred EEChHHc-C-cHHHH
Confidence 9999985 4 76543
No 74
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.01 E-value=9.7e-09 Score=100.72 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=106.3
Q ss_pred HHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhc
Q psy5880 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVL 203 (328)
Q Consensus 124 ~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~ 203 (328)
+.+..+..++ +|.+.++..- + +.+...+.++++++.. .++|++.+-. .+ .+.+..+
T Consensus 236 ~~a~~l~~~G--~d~ivi~~a~----g-----~~~~~~~~i~~l~~~~------p~~pvi~G~v--~t----~~~a~~~- 291 (491)
T 1zfj_A 236 ERAEALFEAG--ADAIVIDTAH----G-----HSAGVLRKIAEIRAHF------PNRTLIAGNI--AT----AEGARAL- 291 (491)
T ss_dssp HHHHHHHHHT--CSEEEECCSC----T-----TCHHHHHHHHHHHHHC------SSSCEEEEEE--CS----HHHHHHH-
T ss_pred HHHHHHHHcC--CCeEEEeeec----C-----cchhHHHHHHHHHHHC------CCCcEeCCCc--cC----HHHHHHH-
Confidence 3344444554 9999977531 1 2233456666666651 2789985422 22 2456677
Q ss_pred cccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHH---HcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 204 DSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYK---LTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 204 ~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~---~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.++|+|+|.+++.... ..+. ....++.++ .+..++++.+ ..+ +|||++|||++++|+.+++.+
T Consensus 292 -~~~Gad~I~vg~g~g~-~~~t-----r~~~~~~~p-----~~~~l~~~~~~~~~~~--ipvia~GGi~~~~di~kal~~ 357 (491)
T 1zfj_A 292 -YDAGVDVVKVGIGPGS-ICTT-----RVVAGVGVP-----QVTAIYDAAAVAREYG--KTIIADGGIKYSGDIVKALAA 357 (491)
T ss_dssp -HHTTCSEEEECSSCCT-TBCH-----HHHTCCCCC-----HHHHHHHHHHHHHHTT--CEEEEESCCCSHHHHHHHHHT
T ss_pred -HHcCCCEEEECccCCc-ceEE-----eeecCCCCC-----cHHHHHHHHHHHhhcC--CCEEeeCCCCCHHHHHHHHHc
Confidence 7999999988643211 0000 001122222 2333444443 344 999999999999999999999
Q ss_pred ccCeeeehhHHhh-------------------------------------------------cC-----------chHHH
Q psy5880 281 GASLVQIYTSFVY-------------------------------------------------HG-----------PPLVT 300 (328)
Q Consensus 281 GAd~V~vg~a~l~-------------------------------------------------~g-----------p~~~~ 300 (328)
||++|++|++++. +| ..++.
T Consensus 358 GA~~v~vG~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 437 (491)
T 1zfj_A 358 GGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVF 437 (491)
T ss_dssp TCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------CCCCCSBCEEEEECCBCHHHHHH
T ss_pred CCcceeeCHHhhCCCcCcceEEEECCEEEEEEecccCHHHHhccccccccccccccccccCcCcceEecCcCCCHHHHHH
Confidence 9999999999971 11 02677
Q ss_pred HHHHHHHHHHHHhCCCCHHHHhcc
Q psy5880 301 RIKSELEELLQKEGYNSVSQAVGA 324 (328)
Q Consensus 301 ~i~~~l~~~m~~~g~~si~e~~G~ 324 (328)
.+..+++..|...|++++.+|...
T Consensus 438 ~l~~~l~~~~~~~G~~~~~~l~~~ 461 (491)
T 1zfj_A 438 QMLGGIRSGMGYVGAGDIQELHEN 461 (491)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHhhhcCcccHHHHHhc
Confidence 888899999999999999999753
No 75
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=99.00 E-value=9.2e-10 Score=97.96 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=71.7
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..++++.+ .++|++.|.++++... +.++|+ .++.++++++.++ +|||++|||++++|
T Consensus 150 ~~~e~~~~~--~~~G~~~i~~~~~~~~-------------~~~~g~-----~~~~~~~l~~~~~--ipvia~GGI~~~~d 207 (244)
T 2y88_A 150 DLWDVLERL--DSEGCSRFVVTDITKD-------------GTLGGP-----NLDLLAGVADRTD--APVIASGGVSSLDD 207 (244)
T ss_dssp EHHHHHHHH--HHTTCCCEEEEETTTT-------------TTTSCC-----CHHHHHHHHTTCS--SCEEEESCCCSHHH
T ss_pred CHHHHHHHH--HhCCCCEEEEEecCCc-------------cccCCC-----CHHHHHHHHHhCC--CCEEEECCCCCHHH
Confidence 357788888 8999999988876542 223443 2577888888775 99999999999999
Q ss_pred HHHHHHh---ccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 274 AFEKIKA---GASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 274 a~~~l~~---GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+.+++++ ||++|++||+++ .+|+++.++++.
T Consensus 208 ~~~~~~~~~~Gad~v~vG~al~-~~~~~~~~~~~~ 241 (244)
T 2y88_A 208 LRAIATLTHRGVEGAIVGKALY-ARRFTLPQALAA 241 (244)
T ss_dssp HHHHHTTGGGTEEEEEECHHHH-TTSSCHHHHHHH
T ss_pred HHHHHhhccCCCCEEEEcHHHH-CCCcCHHHHHHH
Confidence 9999998 999999999997 568888777654
No 76
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.00 E-value=1.4e-08 Score=99.93 Aligned_cols=162 Identities=12% Similarity=0.106 Sum_probs=103.7
Q ss_pred HHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCC-CCEEEEeCCCCChhhHHHHHHHhcc
Q psy5880 126 VKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPL-PPILVKIAPDLSLDEKKDIADVVLD 204 (328)
Q Consensus 126 ~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~-~Pv~vKl~~~~~~~~~~~~a~~l~~ 204 (328)
++.+.+.+ ++.+.++.+.-+ .....+.++.+++.. .+ .|++++-.. + .+-++.+
T Consensus 247 ~~~l~e~g--v~~l~Vd~~~g~---------~~~~~~~i~~lk~~~------~~~~~Vi~G~V~--t----~~~a~~l-- 301 (503)
T 1me8_A 247 VPALVEAG--ADVLCIDSSDGF---------SEWQKITIGWIREKY------GDKVKVGAGNIV--D----GEGFRYL-- 301 (503)
T ss_dssp HHHHHHHT--CSEEEECCSCCC---------SHHHHHHHHHHHHHH------GGGSCEEEEEEC--S----HHHHHHH--
T ss_pred HHHHHhhh--ccceEEecccCc---------ccchhhHHHHHHHhC------CCCceEeecccc--C----HHHHHHH--
Confidence 45555555 788887655211 122444456666652 25 799876433 2 2345667
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC-------CCccEEEecCCCCHHHHHHH
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK-------GKLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~-------~~ipvia~GGI~s~~da~~~ 277 (328)
.++|+|++.+.....+ ... . ....++ |. | .+..+.++.+..+ .++|||+.|||+++.|+.++
T Consensus 302 ~~aGad~I~Vg~~~g~-~~~--~---r~~~~~-g~---p-~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kA 370 (503)
T 1me8_A 302 ADAGADFIKIGIGGGS-ICI--T---REQKGI-GR---G-QATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLA 370 (503)
T ss_dssp HHHTCSEEEECSSCST-TCC--S---TTTTCC-CC---C-HHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHH
T ss_pred HHhCCCeEEecccCCc-Ccc--c---ccccCC-CC---c-hHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHH
Confidence 7899999988332111 000 0 000111 11 1 2333444433321 13999999999999999999
Q ss_pred HHhccCeeeehhHHhhc-----------------------------------------------------Cc--hHHHHH
Q psy5880 278 IKAGASLVQIYTSFVYH-----------------------------------------------------GP--PLVTRI 302 (328)
Q Consensus 278 l~~GAd~V~vg~a~l~~-----------------------------------------------------gp--~~~~~i 302 (328)
+++||++|++||.|+.- ++ +++..+
T Consensus 371 lalGA~~V~iG~~~~~~~E~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~v~~~~~~~ 450 (503)
T 1me8_A 371 LAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEAS 450 (503)
T ss_dssp HHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSHHHHCC--------------CCCEEEEECCBCHHHHHHHH
T ss_pred HHcCCCEEEECchhhccccCCCceEEECCeEEEeecCccchhHhhccccccccccceecccceeEecCCCCcHHHHHHHH
Confidence 99999999999999510 00 568999
Q ss_pred HHHHHHHHHHhCCCCHHHHhc
Q psy5880 303 KSELEELLQKEGYNSVSQAVG 323 (328)
Q Consensus 303 ~~~l~~~m~~~g~~si~e~~G 323 (328)
..+|+..|...|++|++||+.
T Consensus 451 ~~~l~~~m~~~G~~~i~~l~~ 471 (503)
T 1me8_A 451 LNKVKSTMCNCGALTIPQLQS 471 (503)
T ss_dssp HHHHHHHHHHTTCSBHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHh
Confidence 999999999999999999986
No 77
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=98.99 E-value=3.4e-09 Score=99.10 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=73.5
Q ss_pred Hhhhhhhh--cccCCcccccCCCCcCChhhHHHHHHHhHHHHHHHhh--cCccceEEeccCCCCCcCccCC-CchHHHHH
Q psy5880 8 TCSRILSR--VFRSGEWGCTPTHNMLSSFARMRAWVLQFWLLGILKF--GDVAHYFVVNVSSPNTANLRKL-QAKDQLKH 82 (328)
Q Consensus 8 ~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l--~~~~~~v~~n~sspN~~gl~~~-~~~~~L~~ 82 (328)
.++++.++ ......+++|++.+. .++|.++++.+ ..++||+++|+||||++|++.+ ++++.+.+
T Consensus 115 ~~~~l~~~~~~~~~~pvivsI~g~~-----------~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~ 183 (345)
T 3oix_A 115 YLDYVTELQKQPDSKNHFLSLVGMS-----------PEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQ 183 (345)
T ss_dssp HHHHHHHHHHSTTCCCCEEEECCSS-----------HHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHH
T ss_pred HHHHHHHHhhccCCCCEEEEecCCC-----------HHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHH
Confidence 34455442 223455888886432 25899999987 4567799999999999998888 47888999
Q ss_pred HHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcc
Q psy5880 83 LLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGD 134 (328)
Q Consensus 83 ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~ 134 (328)
+++++++.. ..|+++|++|+. .+.++++.++.++.
T Consensus 184 il~av~~~~-------~~PV~vKi~p~~----------~~~~~a~~~~~aga 218 (345)
T 3oix_A 184 ILSEVFTYF-------TKPLGIKLPPYF----------DIVHFDQAAAIFNX 218 (345)
T ss_dssp HHHHHTTTC-------CSCEEEEECCCC----------CHHHHHHHHHHHTT
T ss_pred HHHHHHHHh-------CCCeEEEECCCC----------CHHHHHHHHHHhCC
Confidence 999988653 479999999984 35777778877773
No 78
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=98.95 E-value=7.4e-09 Score=92.48 Aligned_cols=94 Identities=19% Similarity=0.257 Sum_probs=72.7
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..+.++.+ .+.|++.|.++++... |...|+ .++.++++++.++ +|||++|||++++|+
T Consensus 154 ~~e~~~~~--~~~G~~~i~~~~~~~~-------------g~~~g~-----~~~~i~~l~~~~~--ipvia~GGI~~~~d~ 211 (252)
T 1ka9_F 154 AVEWAVKG--VELGAGEILLTSMDRD-------------GTKEGY-----DLRLTRMVAEAVG--VPVIASGGAGRMEHF 211 (252)
T ss_dssp HHHHHHHH--HHHTCCEEEEEETTTT-------------TTCSCC-----CHHHHHHHHHHCS--SCEEEESCCCSHHHH
T ss_pred HHHHHHHH--HHcCCCEEEEecccCC-------------CCcCCC-----CHHHHHHHHHHcC--CCEEEeCCCCCHHHH
Confidence 56778888 8899999988754321 223332 2688899999886 999999999999999
Q ss_pred HHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 275 FEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 275 ~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
.+++++|||+|++||+++ ++++-+.++++ ++...|+
T Consensus 212 ~~~~~~Gadgv~vgsal~-~~~~~~~~~~~----~l~~~~~ 247 (252)
T 1ka9_F 212 LEAFQAGAEAALAASVFH-FGEIPIPKLKR----YLAEKGV 247 (252)
T ss_dssp HHHHHTTCSEEEESHHHH-TTSSCHHHHHH----HHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHH-cCCCCHHHHHH----HHHHCCC
Confidence 999999999999999997 45655666543 4666666
No 79
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=98.94 E-value=2e-08 Score=90.69 Aligned_cols=165 Identities=18% Similarity=0.233 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHhcccccEEEEc--cCCCCCcc-------hhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVN--VSSPNTAN-------LRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD 189 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN--~scPn~~g-------~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~ 189 (328)
.+...++++...+.+ +|.||+. ||-|..+| .+.++++-.+..+++.|++.++.. .++|+++-.=.+
T Consensus 33 ~~~~~~~~~~l~~~G--aD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~---~~~Pivlm~Y~n 107 (271)
T 3nav_A 33 PEQSLAIMQTLIDAG--ADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARN---PETPIGLLMYAN 107 (271)
T ss_dssp HHHHHHHHHHHHHTT--CSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTSCEEEEECHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC---CCCCEEEEecCc
Confidence 345666667766666 9999987 45566543 122333433445555555554321 478998753111
Q ss_pred C-ChhhHHHHHHHhccccCCccEEEEecCCccch--------h-hh------cc-----cc--------cc----ccCCC
Q psy5880 190 L-SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRY--------E-YL------DA-----RY--------KE----ETGGL 236 (328)
Q Consensus 190 ~-~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~--------~-~~------~~-----~~--------~~----~~gg~ 236 (328)
. -.-.+..+++.+ .++|+|++.+..-..... . +. .| .. .. ..-|.
T Consensus 108 ~v~~~g~~~f~~~~--~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY~vs~~Gv 185 (271)
T 3nav_A 108 LVYARGIDDFYQRC--QKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGV 185 (271)
T ss_dssp HHHHTCHHHHHHHH--HHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEEECCCC--
T ss_pred HHHHHhHHHHHHHH--HHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEEEEeccCC
Confidence 0 000145677878 788888876643222100 0 00 00 00 00 11123
Q ss_pred CCCc--CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 237 SGEP--LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 237 sg~~--~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
.|.. ..+...++++++|+..+ +||+..+||++++++.+.+..|||+|.|||++.
T Consensus 186 TG~~~~~~~~~~~~v~~vr~~~~--~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv 241 (271)
T 3nav_A 186 TGAETKANMPVHALLERLQQFDA--PPALLGFGISEPAQVKQAIEAGAAGAISGSAVV 241 (271)
T ss_dssp ------CCHHHHHHHHHHHHTTC--CCEEECSSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred CCcccCCchhHHHHHHHHHHhcC--CCEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 3432 22234578899999876 999999999999999999999999999999996
No 80
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=98.93 E-value=2.4e-09 Score=97.91 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCCccEE--EecCCCCHHHHHHHHHhccCeeeehhHHhhc-Cc-hHHHHHHHHHHHHHHHhCCCCHHH
Q psy5880 245 STELISEMYKLTKGKLPII--GVGGVFSGKDAFEKIKAGASLVQIYTSFVYH-GP-PLVTRIKSELEELLQKEGYNSVSQ 320 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvi--a~GGI~s~~da~~~l~~GAd~V~vg~a~l~~-gp-~~~~~i~~~l~~~m~~~g~~si~e 320 (328)
.++.++++++.++ +||+ +.|||++++|+.+++.+|||+|++|++++.. +| ..++++.+.+..|+..+.+.++++
T Consensus 195 ~~~ll~~i~~~~~--iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~~~~~~~~~~i~~ 272 (297)
T 4adt_A 195 PIDLILLTRKLKR--LPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSNFNNPKILLNVSL 272 (297)
T ss_dssp CHHHHHHHHHHTS--CSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTTTCHHHHHHTTT
T ss_pred CHHHHHHHHHhcC--CCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHhhCCHHHHHHHHh
Confidence 3577888888876 8887 9999999999999999999999999999843 45 357888888889998888888887
Q ss_pred Hhcccc
Q psy5880 321 AVGAAH 326 (328)
Q Consensus 321 ~~G~~~ 326 (328)
-.|.+.
T Consensus 273 ~~~~~~ 278 (297)
T 4adt_A 273 GLGKAM 278 (297)
T ss_dssp TCCCCC
T ss_pred hcccCC
Confidence 776543
No 81
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=98.91 E-value=1.7e-08 Score=94.63 Aligned_cols=146 Identities=13% Similarity=0.055 Sum_probs=91.6
Q ss_pred hHHHHHHHhhcC----ccceEEeccCCCCCcCccCCC-chHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccc
Q psy5880 43 QFWLLGILKFGD----VAHYFVVNVSSPNTANLRKLQ-AKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKD 117 (328)
Q Consensus 43 ~~y~~~~~~l~~----~~~~v~~n~sspN~~gl~~~~-~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~ 117 (328)
++|.++++++.. .+||+++|+||||++|.+.++ +++.+.++++++++.. ..|+++|++|+++
T Consensus 139 ~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~-------~~PV~vKi~p~~d------ 205 (354)
T 4ef8_A 139 RENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVY-------PHSFGVKMPPYFD------ 205 (354)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHC-------CSCEEEEECCCCS------
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhh-------CCCeEEEecCCCC------
Confidence 579999988773 369999999999999988886 6799999999998874 4799999999863
Q ss_pred hhHHHHHHHHHHHHhcccccEEEE-ccC---------CCCC----c----chhhhhhhHHHHHHHHHHHHHHHhhcCCCC
Q psy5880 118 IADVVLDSVKGILKFGDVAHYFVV-NVS---------SPNT----A----NLRKLQAKDQLKHLLKTVVETRNQLAVKPL 179 (328)
Q Consensus 118 ~~~~i~~~~~~a~~~~~~~d~iei-N~s---------cPn~----~----g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~ 179 (328)
.+.+.++++.+.+++ ++|+|.+ |.. .... . |+.-........+++..+++.. .+
T Consensus 206 -~~~~~~~a~~~~~~G-g~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~------~~ 277 (354)
T 4ef8_A 206 -FAHFDAAAEILNEFP-KVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRC------PG 277 (354)
T ss_dssp -HHHHHHHHHHHHTCT-TEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHC------TT
T ss_pred -HHHHHHHHHHHHhCC-CccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhC------CC
Confidence 233445554444432 2787764 211 1100 0 0000001123456666666541 36
Q ss_pred CCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEec
Q psy5880 180 PPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 180 ~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
+||+.= .++.. ..++.+.+ .+|+|+|.+..
T Consensus 278 ipII~~--GGI~s--~~da~~~l---~aGAd~V~vgr 307 (354)
T 4ef8_A 278 KLIFGC--GGVYT--GEDAFLHV---LAGASMVQVGT 307 (354)
T ss_dssp SEEEEE--SCCCS--HHHHHHHH---HHTEEEEEECH
T ss_pred CCEEEE--CCcCC--HHHHHHHH---HcCCCEEEEhH
Confidence 888754 33321 34455555 58999986653
No 82
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=98.90 E-value=7.9e-09 Score=91.80 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=79.0
Q ss_pred EEEEeCCCCC--hhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCC
Q psy5880 182 ILVKIAPDLS--LDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGK 259 (328)
Q Consensus 182 v~vKl~~~~~--~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ 259 (328)
+.+++..... ..+..+.++.+ .+.|+|+|.+++.... |...|+ .++.++++++.++
T Consensus 141 ~~v~~~~~~~~~~~~~~e~~~~~--~~~G~d~i~~~~~~~~-------------g~~~~~-----~~~~i~~l~~~~~-- 198 (253)
T 1h5y_A 141 YEVYVKGGREATGLDAVKWAKEV--EELGAGEILLTSIDRD-------------GTGLGY-----DVELIRRVADSVR-- 198 (253)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHH--HHHTCSEEEEEETTTT-------------TTCSCC-----CHHHHHHHHHHCS--
T ss_pred EEEEEeCCeecCCCCHHHHHHHH--HhCCCCEEEEecccCC-------------CCcCcC-----CHHHHHHHHHhcC--
Confidence 5666655421 12356777888 8899999988765432 112222 3577888888875
Q ss_pred ccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCC
Q psy5880 260 LPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYN 316 (328)
Q Consensus 260 ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~ 316 (328)
+||+++|||++++|+.+++++||++|++||+++. ++.-+ +++.+||+++||.
T Consensus 199 ~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~-~~~~~----~~~~~~l~~~g~~ 250 (253)
T 1h5y_A 199 IPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF-RVLSI----AQVKRYLKERGVE 250 (253)
T ss_dssp SCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT-TSSCH----HHHHHHHHHTTCB
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc-CCCCH----HHHHHHHHHcCCC
Confidence 9999999999999999999999999999999974 34333 4567788999984
No 83
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=98.90 E-value=1.1e-08 Score=91.35 Aligned_cols=94 Identities=30% Similarity=0.337 Sum_probs=71.7
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..+.++.+ .+.|++.|.++++... |...|+ .++.++++++.++ +|||++|||++++|+
T Consensus 153 ~~e~~~~~--~~~G~~~i~~~~~~~~-------------g~~~g~-----~~~~~~~l~~~~~--ipvia~GGI~~~~d~ 210 (253)
T 1thf_D 153 LRDWVVEV--EKRGAGEILLTSIDRD-------------GTKSGY-----DTEMIRFVRPLTT--LPIIASGGAGKMEHF 210 (253)
T ss_dssp HHHHHHHH--HHTTCSEEEEEETTTT-------------TSCSCC-----CHHHHHHHGGGCC--SCEEEESCCCSHHHH
T ss_pred HHHHHHHH--HHCCCCEEEEEeccCC-------------CCCCCC-----CHHHHHHHHHhcC--CCEEEECCCCCHHHH
Confidence 56778888 8899999988754322 223343 2577888888776 999999999999999
Q ss_pred HHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 275 FEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 275 ~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
.+++++||++|++||+++ +++.-+.++ ..+|.+.|+
T Consensus 211 ~~~~~~Gadgv~vGsal~-~~~~~~~~~----~~~l~~~g~ 246 (253)
T 1thf_D 211 LEAFLAGADAALAASVFH-FREIDVREL----KEYLKKHGV 246 (253)
T ss_dssp HHHHHTTCSEEEESHHHH-TTCSCHHHH----HHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHH-cCCCCHHHH----HHHHHHcCC
Confidence 999999999999999997 456444444 345667776
No 84
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=98.89 E-value=1.2e-07 Score=85.75 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=95.9
Q ss_pred HHHHHhcccccEE--EEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC-------CCChhhHHH
Q psy5880 127 KGILKFGDVAHYF--VVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP-------DLSLDEKKD 197 (328)
Q Consensus 127 ~~a~~~~~~~d~i--eiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~-------~~~~~~~~~ 197 (328)
+.+..++ +|.| .+|..|+.. +...+.++.+.+.++. .++|+++.+.+ +++.+.+.+
T Consensus 106 ~~a~~~G--a~~v~~~l~~~~~~~---------~~~~~~~~~v~~~~~~----~g~~viv~~~~~G~~l~~~~~~~~~~~ 170 (273)
T 2qjg_A 106 EEAIRMG--ADAVSIHVNVGSDED---------WEAYRDLGMIAETCEY----WGMPLIAMMYPRGKHIQNERDPELVAH 170 (273)
T ss_dssp HHHHHTT--CSEEEEEEEETSTTH---------HHHHHHHHHHHHHHHH----HTCCEEEEEEECSTTCSCTTCHHHHHH
T ss_pred HHHHHcC--CCEEEEEEecCCCCH---------HHHHHHHHHHHHHHHH----cCCCEEEEeCCCCcccCCCCCHhHHHH
Confidence 3444455 9999 777776532 1122333333333322 36899987621 244445667
Q ss_pred HHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCC--HHH--
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFS--GKD-- 273 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s--~~d-- 273 (328)
+++.+ .++|+|+|.++.+ ..++.++++++.++ +||++.|||.+ .+|
T Consensus 171 ~a~~a--~~~Gad~i~~~~~--------------------------~~~~~l~~i~~~~~--ipvva~GGi~~~~~~~~~ 220 (273)
T 2qjg_A 171 AARLG--AELGADIVKTSYT--------------------------GDIDSFRDVVKGCP--APVVVAGGPKTNTDEEFL 220 (273)
T ss_dssp HHHHH--HHTTCSEEEECCC--------------------------SSHHHHHHHHHHCS--SCEEEECCSCCSSHHHHH
T ss_pred HHHHH--HHcCCCEEEECCC--------------------------CCHHHHHHHHHhCC--CCEEEEeCCCCCCHHHHH
Confidence 77888 8999998876521 12467788888876 99999999995 888
Q ss_pred --HHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHHh
Q psy5880 274 --AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAV 322 (328)
Q Consensus 274 --a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~ 322 (328)
+.+++++||+.|.+||+++. .++. .+..+.+.+.+.+. .+++|..
T Consensus 221 ~~~~~~~~~Ga~gv~vg~~i~~-~~~~-~~~~~~l~~~~~~~--~~~~~~~ 267 (273)
T 2qjg_A 221 QMIKDAMEAGAAGVAVGRNIFQ-HDDV-VGITRAVCKIVHEN--ADVEEAL 267 (273)
T ss_dssp HHHHHHHHHTCSEEECCHHHHT-SSSH-HHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHHcCCcEEEeeHHhhC-CCCH-HHHHHHHHHHHhcC--CCHHHHH
Confidence 55555799999999999974 4654 44555566665543 5777664
No 85
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=98.89 E-value=5.9e-08 Score=87.50 Aligned_cols=164 Identities=17% Similarity=0.229 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhcccccEEEEc--cCCCCCcch-------hhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVN--VSSPNTANL-------RKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL 190 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN--~scPn~~g~-------~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~ 190 (328)
+...++++...+++ +|.||+. ||-|..+|. +-++++-.+..+++.|++.++.. .++|+++-.-.+.
T Consensus 32 ~~~~~~~~~l~~~G--aD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~---~~~Pivlm~Y~np 106 (267)
T 3vnd_A 32 ELSLKIIQTLVDNG--ADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQH---PDMPIGLLLYANL 106 (267)
T ss_dssp HHHHHHHHHHHHTT--CSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHcC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC---CCCCEEEEecCcH
Confidence 45666777777666 9999998 676776532 22333333334444444443221 4789887532110
Q ss_pred -ChhhHHHHHHHhccccCCccEEEEecCCccc--------------------hhhhc----------ccc--ccccCCCC
Q psy5880 191 -SLDEKKDIADVVLDSKCKVDGLIVSNTTVDR--------------------YEYLD----------ARY--KEETGGLS 237 (328)
Q Consensus 191 -~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~--------------------~~~~~----------~~~--~~~~gg~s 237 (328)
-.-.+..+++.+ .++|+|++.+..-.... |.+.. ... ....-|..
T Consensus 107 v~~~g~e~f~~~~--~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gfvY~vS~~GvT 184 (267)
T 3vnd_A 107 VFANGIDEFYTKA--QAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSRAGVT 184 (267)
T ss_dssp HHHHCHHHHHHHH--HHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEESCCCCCC
T ss_pred HHHhhHHHHHHHH--HHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEecCCCC
Confidence 000146678888 88888888775332210 00000 000 00112233
Q ss_pred CCc--CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 238 GEP--LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 238 g~~--~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
|.. ..+...+.++++|+..+ +||+..|||+|++++.+.+.+|||+|.|||+++
T Consensus 185 G~~~~~~~~~~~~v~~vr~~~~--~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv 239 (267)
T 3vnd_A 185 GTESKAGEPIENILTQLAEFNA--PPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVV 239 (267)
T ss_dssp --------CHHHHHHHHHTTTC--CCEEECSSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred CCccCCcHHHHHHHHHHHHhcC--CCEEEECCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 322 12234678899998875 999999999999999999999999999999996
No 86
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=98.87 E-value=2e-09 Score=96.97 Aligned_cols=132 Identities=18% Similarity=0.184 Sum_probs=90.5
Q ss_pred cccEEEEccCCCCCcchhhhhh-----hHHHHHHHHHHHHHHHhhcCCCCCCEE----------EEeCCCCCh---hhHH
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQA-----KDQLKHLLKTVVETRNQLAVKPLPPIL----------VKIAPDLSL---DEKK 196 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~-----~~~~~~i~~~v~~~~~~~~~~~~~Pv~----------vKl~~~~~~---~~~~ 196 (328)
++|-+.+|.. ...+ |+++.++++.+.+.+ .-+++- ||+. ++.. -++.
T Consensus 96 Ga~~Viigs~--------a~~~~g~~~p~~~~~~~~~~g~~~------ivv~iD~k~~~~~g~~V~~~-gw~~~t~~~~~ 160 (260)
T 2agk_A 96 WASKVIVTSW--------LFTKEGHFQLKRLERLTELCGKDR------IVVDLSCRKTQDGRWIVAMN-KWQTLTDLELN 160 (260)
T ss_dssp TCSCEEECGG--------GBCTTCCBCHHHHHHHHHHHCGGG------EEEEEEEEEEETTEEEEEET-TTTEEEEEEES
T ss_pred CCCEEEECcH--------HHhhcCCCCHHHHHHHHHHhCcCc------EEEEEEeeecCCCceEEEEc-CCccccCccHH
Confidence 3888876543 2234 778888887764221 112333 3332 2221 1345
Q ss_pred -HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc----CCCccEEEecCCCCH
Q psy5880 197 -DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT----KGKLPIIGVGGVFSG 271 (328)
Q Consensus 197 -~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~----~~~ipvia~GGI~s~ 271 (328)
++++.+ ++. ++.|.+++.... |.++|+ .++.++++++.+ + +|||++|||+|+
T Consensus 161 ~e~a~~~--~~~-a~~il~t~i~~d-------------G~~~G~-----d~eli~~l~~~~~~~~~--iPVIasGGi~s~ 217 (260)
T 2agk_A 161 ADTFREL--RKY-TNEFLIHAADVE-------------GLCGGI-----DELLVSKLFEWTKDYDD--LKIVYAGGAKSV 217 (260)
T ss_dssp HHHHHHH--TTT-CSEEEEEC--------------------CCC-----CHHHHHHHHHHHTTCSS--CEEEEESCCCCT
T ss_pred HHHHHHH--HHh-cCEEEEEeeccc-------------cCcCCC-----CHHHHHHHHHhhcccCC--ceEEEeCCCCCH
Confidence 889999 899 999999876543 445664 358899999988 6 999999999999
Q ss_pred HHHHHHHHh--ccCeeeehhHH-hhcCc-hHHHHHHH
Q psy5880 272 KDAFEKIKA--GASLVQIYTSF-VYHGP-PLVTRIKS 304 (328)
Q Consensus 272 ~da~~~l~~--GAd~V~vg~a~-l~~gp-~~~~~i~~ 304 (328)
+|+.++++. ||+.|++||++ ++.|+ ..+.++++
T Consensus 218 ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~~~~~ 254 (260)
T 2agk_A 218 DDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFEDCCR 254 (260)
T ss_dssp HHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHHHHHH
Confidence 999999987 99999999997 55778 77777654
No 87
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=98.87 E-value=4.4e-09 Score=94.80 Aligned_cols=94 Identities=30% Similarity=0.335 Sum_probs=62.5
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..++++.+ .+.|++.|.+++.... |...|+ .++.++++++.++ +|||++|||++++|+
T Consensus 158 ~~e~~~~~--~~~G~~~i~~t~~~~~-------------g~~~g~-----~~~~i~~l~~~~~--ipvia~GGI~~~ed~ 215 (266)
T 2w6r_A 158 LRDWVVEV--EKRGAGEILLTSIDRD-------------GTKSGY-----DTEMIRFVRPLTT--LPIIASGGAGKMEHF 215 (266)
T ss_dssp HHHHHHHH--HHTTCSEEEEEETTTT-------------TTCSCC-----CHHHHHHHGGGCC--SCEEEESCCCSHHHH
T ss_pred HHHHHHHH--HHcCCCEEEEEeecCC-------------CCcCCC-----CHHHHHHHHHHcC--CCEEEeCCCCCHHHH
Confidence 56777888 8899999988764322 223443 2678889988886 999999999999999
Q ss_pred HHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 275 FEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 275 ~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
.+++++||++|++||+++ ++|+.+.+ +.+||.++|+
T Consensus 216 ~~~~~~Gadgv~vgsal~-~~~~~~~~----~~~~l~~~g~ 251 (266)
T 2w6r_A 216 LEAFLAGADAALAASVFH-FREIDMRE----LKEYLKKHGV 251 (266)
T ss_dssp HHHHHHTCSEEEESTTTC-----------------------
T ss_pred HHHHHcCCHHHHccHHHH-cCCCCHHH----HHHHHHHCCC
Confidence 999999999999999997 45765554 4557778887
No 88
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=98.86 E-value=1.3e-07 Score=85.11 Aligned_cols=158 Identities=18% Similarity=0.165 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCC--CCCcchh-------hhh---hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeC
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSS--PNTANLR-------KLQ---AKDQLKHLLKTVVETRNQLAVKPLPPILVKIA 187 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~sc--Pn~~g~~-------~~~---~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~ 187 (328)
+...+.++.+.+++ +|.||+++.+ |...|.- ..+ +.....++++++++. .++|+++...
T Consensus 32 ~~~~~~~~~l~~~G--ad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~-------~~~Pv~~m~~ 102 (262)
T 1rd5_A 32 ATTAEALRLLDGCG--ADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPE-------LSCPVVLLSY 102 (262)
T ss_dssp HHHHHHHHHHHHTT--CSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGG-------CSSCEEEECC
T ss_pred HHHHHHHHHHHHcC--CCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-------CCCCEEEEec
Confidence 34555566666655 9999998644 4543211 111 223344555555543 6789988532
Q ss_pred CCCChhhHHHHHHHhccccCCccEEEEecCCccch----h-----h------hcc-----c------c--cc----ccCC
Q psy5880 188 PDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRY----E-----Y------LDA-----R------Y--KE----ETGG 235 (328)
Q Consensus 188 ~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~----~-----~------~~~-----~------~--~~----~~gg 235 (328)
.+ . ....-.+.+ .++|+|+++++....... . + ..| . . .. ...|
T Consensus 103 ~~--~-~~~~~~~~a--~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~~~s~~G 177 (262)
T 1rd5_A 103 YK--P-IMFRSLAKM--KEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNG 177 (262)
T ss_dssp SH--H-HHSCCTHHH--HHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSC
T ss_pred Cc--H-HHHHHHHHH--HHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHhcCCCeEEEecCCC
Confidence 21 1 000011225 688999988765331100 0 0 000 0 0 00 1234
Q ss_pred CCCC--cCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 236 LSGE--PLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 236 ~sg~--~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
++|. ...+..++.++++++..+ +||++.|||+|++++.+++.+|||.|.+||++..
T Consensus 178 ~tG~~~~~~~~~~~~i~~v~~~~~--~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~ 235 (262)
T 1rd5_A 178 VTGPRANVNPRVESLIQEVKKVTN--KPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVR 235 (262)
T ss_dssp CBCTTSCBCTHHHHHHHHHHHHCS--SCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred CCCCCcCCCchHHHHHHHHHhhcC--CeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 4554 333556788999999876 9999999999999999999999999999999873
No 89
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=98.86 E-value=9e-09 Score=91.87 Aligned_cols=102 Identities=29% Similarity=0.311 Sum_probs=79.0
Q ss_pred EEEEeCCCCC--hhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCC
Q psy5880 182 ILVKIAPDLS--LDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGK 259 (328)
Q Consensus 182 v~vKl~~~~~--~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ 259 (328)
..||+..... ..++.++++.+ .++|++.|+++..... +...+ ..++.++++++.++
T Consensus 22 ~~v~~~~~~~~~~~~~~~~a~~~--~~~G~~~i~v~d~~~~-------------~~~~~-----~~~~~i~~i~~~~~-- 79 (247)
T 3tdn_A 22 FMVFTYSGKKNTGILLRDWVVEV--EKRGAGEILLTSIDRD-------------GTKSG-----YDTEMIRFVRPLTT-- 79 (247)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHH--HHTTCSEEEEEETTTT-------------TCSSC-----CCHHHHHHHGGGCC--
T ss_pred EEEEEcCCeecCCCCHHHHHHHH--HHcCCCEEEEEecCcc-------------cCCCc-----ccHHHHHHHHHhCC--
Confidence 4566664332 12578899999 9999999998764221 11111 23578899999887
Q ss_pred ccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 260 LPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 260 ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+||+++|||++++++.+++++|||.|.+||+++. +|+++.++.+.+
T Consensus 80 ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l~-dp~~~~~~~~~~ 125 (247)
T 3tdn_A 80 LPIIASGGAGKMEHFLEAFLRGADKVSINTAAVE-NPSLITQIAQTF 125 (247)
T ss_dssp SCEEEESCCCSHHHHHHHHHTTCSEECCSHHHHH-CTHHHHHHHHHH
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHhh-ChHHHHHHHHHh
Confidence 9999999999999999999999999999999984 699988887654
No 90
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=98.86 E-value=3.7e-09 Score=94.27 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCc---c-hhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTA---N-LRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~---g-~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+-++.++.++ +.++-....||..- | ..-..+|+. +++|+++ +++||+-|...+. +.+
T Consensus 21 ~eqa~iae~aG--a~av~~l~~~p~d~r~~gGv~Rm~dp~~----I~~I~~a-------VsIPVm~k~righ----~~E- 82 (291)
T 3o07_A 21 PEQAKIAEKSG--ACAVMALESIPADMRKSGKVCRMSDPKM----IKDIMNS-------VSIPVMAKVRIGH----FVE- 82 (291)
T ss_dssp HHHHHHHHHHT--CSEEEECSSCHHHHHTTTCCCCCCCHHH----HHHHHTT-------CSSCEEEEEETTC----HHH-
T ss_pred HHHHHHHHHhC--chhhhhccCCCchhhhcCCccccCCHHH----HHHHHHh-------CCCCeEEEEecCc----HHH-
Confidence 45566777777 88998888998841 1 111234443 4445554 7899999988753 334
Q ss_pred HHHhccccCCccEEEEecCCc--cc---h---hhhcc-------------------cc---ccc----------------
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV--DR---Y---EYLDA-------------------RY---KEE---------------- 232 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~--~~---~---~~~~~-------------------~~---~~~---------------- 232 (328)
++.| +++|+|+|+.+.... .. . +...| .+ +.+
T Consensus 83 Aqil--ea~GaD~IDesevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~ 160 (291)
T 3o07_A 83 AQII--EALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRI 160 (291)
T ss_dssp HHHH--HHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHH
T ss_pred HHHH--HHcCCCEEecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHH
Confidence 5778 889999998775311 00 0 00001 00 000
Q ss_pred ------cCCC-CCCcC------chHHHHHHHHHHHHcCCCccE--EEecCCCCHHHHHHHHHhccCeeeehhHHhh-cCc
Q psy5880 233 ------TGGL-SGEPL------RNKSTELISEMYKLTKGKLPI--IGVGGVFSGKDAFEKIKAGASLVQIYTSFVY-HGP 296 (328)
Q Consensus 233 ------~gg~-sg~~~------~~~~l~~v~~i~~~~~~~ipv--ia~GGI~s~~da~~~l~~GAd~V~vg~a~l~-~gp 296 (328)
..|+ ..... ....+++++++++..+ +|| |++|||.|++|+.+++++|||+|+|||+++. .+|
T Consensus 161 ~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~~~--IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP 238 (291)
T 3o07_A 161 TEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEKGK--LPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNP 238 (291)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS--CSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCH
T ss_pred HHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHccC--CCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCH
Confidence 0112 11000 0123688999998876 888 5799999999999999999999999999984 245
Q ss_pred hH
Q psy5880 297 PL 298 (328)
Q Consensus 297 ~~ 298 (328)
..
T Consensus 239 ~~ 240 (291)
T 3o07_A 239 VR 240 (291)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 91
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=98.85 E-value=2.2e-07 Score=83.70 Aligned_cols=158 Identities=20% Similarity=0.212 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhcccccEEEEcc--CCCCCcch-------hhhhhh---HHHHHHHHHHHHHHHhhcCCC-CCCEEEEe
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNV--SSPNTANL-------RKLQAK---DQLKHLLKTVVETRNQLAVKP-LPPILVKI 186 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~--scPn~~g~-------~~~~~~---~~~~~i~~~v~~~~~~~~~~~-~~Pv~vKl 186 (328)
+...++++...+.+ +|.||+++ +.|...|. +.+.++ +...++++++++. . ++|+++ +
T Consensus 31 ~~~~~~~~~l~~~G--~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~-------~~~~Pi~~-m 100 (262)
T 2ekc_A 31 ETSLKAFKEVLKNG--TDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKE-------FPDIPFLL-M 100 (262)
T ss_dssp HHHHHHHHHHHHTT--CSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-------CTTSCEEE-E
T ss_pred HHHHHHHHHHHHcC--CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh-------cCCCCEEE-E
Confidence 45666677776666 99999974 54554321 112222 2344555555544 4 789988 3
Q ss_pred CCCCCh-h--hHHHHHHHhccccCCccEEEEecCCccch---------hhh------cccc-----------------cc
Q psy5880 187 APDLSL-D--EKKDIADVVLDSKCKVDGLIVSNTTVDRY---------EYL------DARY-----------------KE 231 (328)
Q Consensus 187 ~~~~~~-~--~~~~~a~~l~~~~~G~d~i~~~n~~~~~~---------~~~------~~~~-----------------~~ 231 (328)
+. +.. . .+..+++.+ .++|+|++++..-..... .+. .|.. ..
T Consensus 101 ~y-~n~v~~~g~~~f~~~~--~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfiy~v 177 (262)
T 2ekc_A 101 TY-YNPIFRIGLEKFCRLS--REKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFV 177 (262)
T ss_dssp CC-HHHHHHHCHHHHHHHH--HHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCSSCEEEE
T ss_pred ec-CcHHHHhhHHHHHHHH--HHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 22 110 0 125677778 889999887753321100 000 0000 00
Q ss_pred ccCCCCCCc--Cc-hHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 232 ETGGLSGEP--LR-NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 232 ~~gg~sg~~--~~-~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
..-|..|.. .. +...++++++++..+ +||+..|||+|++++.+ +..|||.|.|||++..
T Consensus 178 s~~g~TG~~~~~~~~~~~~~v~~vr~~~~--~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~ 239 (262)
T 2ekc_A 178 SVTGTTGAREKLPYERIKKKVEEYRELCD--KPVVVGFGVSKKEHARE-IGSFADGVVVGSALVK 239 (262)
T ss_dssp SSCC---------CHHHHHHHHHHHHHCC--SCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHH
T ss_pred ecCCccCCCCCcCcccHHHHHHHHHhhcC--CCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHh
Confidence 111233322 11 223578999999875 99999999999999999 8899999999999974
No 92
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=98.84 E-value=1.8e-08 Score=89.66 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=67.1
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
...++++.+ .+.|++.|.++++... +...|. .++.++++++.++ +|||++|||++++|
T Consensus 147 ~~~e~~~~~--~~~G~~~i~~~~~~~~-------------~~~~g~-----~~~~~~~i~~~~~--ipvia~GGI~~~~d 204 (244)
T 1vzw_A 147 DLYETLDRL--NKEGCARYVVTDIAKD-------------GTLQGP-----NLELLKNVCAATD--RPVVASGGVSSLDD 204 (244)
T ss_dssp BHHHHHHHH--HHTTCCCEEEEEC--------------------CC-----CHHHHHHHHHTCS--SCEEEESCCCSHHH
T ss_pred CHHHHHHHH--HhCCCCEEEEeccCcc-------------cccCCC-----CHHHHHHHHHhcC--CCEEEECCCCCHHH
Confidence 356778888 8899999988875432 212332 3578888888876 99999999999999
Q ss_pred HHHHHHh---ccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 274 AFEKIKA---GASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 274 a~~~l~~---GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+.+++++ ||++|++||+++ .+++-+.++.+.
T Consensus 205 ~~~~~~~~~~Gadgv~vG~al~-~~~~~~~~~~~~ 238 (244)
T 1vzw_A 205 LRAIAGLVPAGVEGAIVGKALY-AKAFTLEEALEA 238 (244)
T ss_dssp HHHHHTTGGGTEEEEEECHHHH-TTSSCHHHHHHH
T ss_pred HHHHHhhccCCCceeeeeHHHH-cCCCCHHHHHHH
Confidence 9999998 999999999997 457556655443
No 93
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=98.84 E-value=2.5e-08 Score=88.19 Aligned_cols=130 Identities=15% Similarity=0.221 Sum_probs=85.8
Q ss_pred HHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhc
Q psy5880 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVL 203 (328)
Q Consensus 124 ~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~ 203 (328)
+.++.+..++ +|.+.++...-..+ +...+.++++.+++.. .+.++++.+.. . .+ +..+
T Consensus 92 ~~i~~~~~~G--ad~V~l~~~~~~~~------~~~~~~~~i~~i~~~~------~~~~v~~~~~t---~---~e-a~~a- 149 (234)
T 1yxy_A 92 TEVDQLAALN--IAVIAMDCTKRDRH------DGLDIASFIRQVKEKY------PNQLLMADIST---F---DE-GLVA- 149 (234)
T ss_dssp HHHHHHHTTT--CSEEEEECCSSCCT------TCCCHHHHHHHHHHHC------TTCEEEEECSS---H---HH-HHHH-
T ss_pred HHHHHHHHcC--CCEEEEcccccCCC------CCccHHHHHHHHHHhC------CCCeEEEeCCC---H---HH-HHHH-
Confidence 3344455555 99998876531110 0123567777777752 36788886542 2 22 5666
Q ss_pred cccCCccEE--EEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 204 DSKCKVDGL--IVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 204 ~~~~G~d~i--~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
.++|+|+| ++++.... ..++.+ ..++.++++++. + +||++.|||+|++++.+++++|
T Consensus 150 -~~~Gad~i~~~v~g~~~~------------~~~~~~-----~~~~~i~~~~~~-~--ipvia~GGI~s~~~~~~~~~~G 208 (234)
T 1yxy_A 150 -HQAGIDFVGTTLSGYTPY------------SRQEAG-----PDVALIEALCKA-G--IAVIAEGKIHSPEEAKKINDLG 208 (234)
T ss_dssp -HHTTCSEEECTTTTSSTT------------SCCSSS-----CCHHHHHHHHHT-T--CCEEEESCCCSHHHHHHHHTTC
T ss_pred -HHcCCCEEeeeccccCCC------------CcCCCC-----CCHHHHHHHHhC-C--CCEEEECCCCCHHHHHHHHHCC
Confidence 78999999 44442211 001122 235777888776 5 9999999999999999999999
Q ss_pred cCeeeehhHHhhcCchH
Q psy5880 282 ASLVQIYTSFVYHGPPL 298 (328)
Q Consensus 282 Ad~V~vg~a~l~~gp~~ 298 (328)
||+|++||+++ + |..
T Consensus 209 ad~v~vGsal~-~-p~~ 223 (234)
T 1yxy_A 209 VAGIVVGGAIT-R-PKE 223 (234)
T ss_dssp CSEEEECHHHH-C-HHH
T ss_pred CCEEEEchHHh-C-hHH
Confidence 99999999986 4 643
No 94
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=98.82 E-value=2.7e-07 Score=81.74 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=73.1
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.++.++.-+.++ ..+++.+ +++|+++|.-.+... |+ |..+. ..++++.+++..+
T Consensus 134 ~Gf~Vlpy~~dd------~~~akrl--~~~G~~aVmPlg~pI--------------Gs--G~Gi~--~~~lI~~I~e~~~ 187 (265)
T 1wv2_A 134 DGFDVMVYTSDD------PIIARQL--AEIGCIAVMPLAGLI--------------GS--GLGIC--NPYNLRIILEEAK 187 (265)
T ss_dssp TTCEEEEEECSC------HHHHHHH--HHSCCSEEEECSSST--------------TC--CCCCS--CHHHHHHHHHHCS
T ss_pred CCCEEEEEeCCC------HHHHHHH--HHhCCCEEEeCCccC--------------CC--CCCcC--CHHHHHHHHhcCC
Confidence 356666555553 4578888 899999995544321 11 11111 2467788888765
Q ss_pred CCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh-cCchH-HHH----HHHHHHHHHHH
Q psy5880 258 GKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY-HGPPL-VTR----IKSELEELLQK 312 (328)
Q Consensus 258 ~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~-~gp~~-~~~----i~~~l~~~m~~ 312 (328)
+|||+.|||.|++|+.++++.|||+|++||++.. ++|.. .+. +..+...|+..
T Consensus 188 --vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~aGr~a~~ag 246 (265)
T 1wv2_A 188 --VPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVAGRLAYLAG 246 (265)
T ss_dssp --SCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --CCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999963 34542 233 33344555543
No 95
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=98.82 E-value=9.8e-08 Score=89.03 Aligned_cols=172 Identities=20% Similarity=0.263 Sum_probs=112.5
Q ss_pred CcccccCCCCcCChhhHHHHHHHhHHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhc--CC
Q psy5880 20 GEWGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA--LK 97 (328)
Q Consensus 20 ~~~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~--~~ 97 (328)
+.+++|++.++.++. +...++|.+.++++...+|++++|.+|||+.|.+.+++.+.+.+++++|++...++. ++
T Consensus 134 ~~~~v~i~~~~~~~i----~~~~~~~~~aa~~~~~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g 209 (336)
T 1f76_A 134 GVLGINIGKNKDTPV----EQGKDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHH 209 (336)
T ss_dssp SEEEEEECCCTTSCG----GGTHHHHHHHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEecCCCCCcc----cccHHHHHHHHHHHhccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccc
Confidence 479999998875532 234578999999887678999999999999988888888889999999988763321 01
Q ss_pred CCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCc------------chhhhhhhHHHHHHHH
Q psy5880 98 PLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTA------------NLRKLQAKDQLKHLLK 165 (328)
Q Consensus 98 ~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~------------g~~~~~~~~~~~~i~~ 165 (328)
...|+++|+.++++ .++..++++.++.++ +|+|.+.-+..... +...........+.++
T Consensus 210 ~~~Pv~vKi~~~~~-------~~~~~~~a~~l~~~G--vd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~ 280 (336)
T 1f76_A 210 KYVPIAVKIAPDLS-------EEELIQVADSLVRHN--IDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIR 280 (336)
T ss_dssp SCCCEEEECCSCCC-------HHHHHHHHHHHHHTT--CSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHH
T ss_pred ccCceEEEecCCCC-------HHHHHHHHHHHHHcC--CcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHH
Confidence 24799999998753 345677777777776 99998642110000 0000000112345666
Q ss_pred HHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEec
Q psy5880 166 TVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 166 ~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
.+++.. + .++||+.= .++.. ..++.+.+ ++|||+|.+..
T Consensus 281 ~i~~~~---~--~~ipVi~~--GGI~~--~~da~~~l---~~GAd~V~igr 319 (336)
T 1f76_A 281 RLSLEL---N--GRLPIIGV--GGIDS--VIAAREKI---AAGASLVQIYS 319 (336)
T ss_dssp HHHHHH---T--TSSCEEEE--SSCCS--HHHHHHHH---HHTCSEEEESH
T ss_pred HHHHHh---C--CCCCEEEE--CCCCC--HHHHHHHH---HCCCCEEEeeH
Confidence 666652 1 27898753 33332 34555555 57999996653
No 96
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=98.81 E-value=8.1e-08 Score=83.41 Aligned_cols=142 Identities=15% Similarity=0.168 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
..+++.+..++ +|++.++...+ .+.+.++++.+++. +.++++-+..-.+ ..+.++.+
T Consensus 67 ~~~~~~~~~~G--ad~v~v~~~~~----------~~~~~~~~~~~~~~--------g~~~~v~~~~~~t---~~~~~~~~ 123 (211)
T 3f4w_A 67 HFESQLLFDAG--ADYVTVLGVTD----------VLTIQSCIRAAKEA--------GKQVVVDMICVDD---LPARVRLL 123 (211)
T ss_dssp HHHHHHHHHTT--CSEEEEETTSC----------HHHHHHHHHHHHHH--------TCEEEEECTTCSS---HHHHHHHH
T ss_pred HHHHHHHHhcC--CCEEEEeCCCC----------hhHHHHHHHHHHHc--------CCeEEEEecCCCC---HHHHHHHH
Confidence 34577777777 99999865421 12345666665553 4566665322122 34556777
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhcc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGA 282 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GA 282 (328)
.+.|+|+|.+.....+. ..++ ..++.++++++.++ ++||++.|||+ ++++.+++++||
T Consensus 124 --~~~g~d~i~v~~g~~g~--------------~~~~----~~~~~i~~l~~~~~-~~~i~~~gGI~-~~~~~~~~~~Ga 181 (211)
T 3f4w_A 124 --EEAGADMLAVHTGTDQQ--------------AAGR----KPIDDLITMLKVRR-KARIAVAGGIS-SQTVKDYALLGP 181 (211)
T ss_dssp --HHHTCCEEEEECCHHHH--------------HTTC----CSHHHHHHHHHHCS-SCEEEEESSCC-TTTHHHHHTTCC
T ss_pred --HHcCCCEEEEcCCCccc--------------ccCC----CCHHHHHHHHHHcC-CCcEEEECCCC-HHHHHHHHHcCC
Confidence 78999998665321110 0011 12577888888863 49999999996 999999999999
Q ss_pred CeeeehhHHhhcCchHHHHHHHHHHHHHH
Q psy5880 283 SLVQIYTSFVYHGPPLVTRIKSELEELLQ 311 (328)
Q Consensus 283 d~V~vg~a~l~~gp~~~~~i~~~l~~~m~ 311 (328)
|.|.+||+++ +.++.. +..+.+.+.+.
T Consensus 182 d~vvvGsai~-~~~d~~-~~~~~l~~~~~ 208 (211)
T 3f4w_A 182 DVVIVGSAIT-HAADPA-GEARKISQVLL 208 (211)
T ss_dssp SEEEECHHHH-TCSSHH-HHHHHHHHHHH
T ss_pred CEEEECHHHc-CCCCHH-HHHHHHHHHHh
Confidence 9999999997 445533 23333444443
No 97
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=98.80 E-value=2.2e-08 Score=91.69 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCCccE--EEecCCCCHHHHHHHHHhccCeeeehhHHhh-cCchH-HHHHHH
Q psy5880 245 STELISEMYKLTKGKLPI--IGVGGVFSGKDAFEKIKAGASLVQIYTSFVY-HGPPL-VTRIKS 304 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipv--ia~GGI~s~~da~~~l~~GAd~V~vg~a~l~-~gp~~-~~~i~~ 304 (328)
.++.++++++..+ +|| ++.|||+|++|+.+++++|||+|+|||+++. .+|.. .+++.+
T Consensus 228 ~lell~~i~~~~~--IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ 289 (330)
T 2yzr_A 228 LYEVLLEVKKLGR--LPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVE 289 (330)
T ss_dssp HHHHHHHHHHHTS--CSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCC--CCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHH
Confidence 3478888888766 999 6999999999999999999999999999984 24532 344433
No 98
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=98.78 E-value=6.1e-08 Score=83.85 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+...++++.+...+ ++.+++++.+|+. .+.++.+|+.. + .++++ ..+.-.+.+ +
T Consensus 21 ~~~~~~~~~~~~~~G--~~~iev~~~~~~~------------~~~i~~ir~~~---~--~~~~i--g~~~v~~~~---~- 75 (205)
T 1wa3_A 21 VEEAKEKALAVFEGG--VHLIEITFTVPDA------------DTVIKELSFLK---E--KGAII--GAGTVTSVE---Q- 75 (205)
T ss_dssp HHHHHHHHHHHHHTT--CCEEEEETTSTTH------------HHHHHHTHHHH---H--TTCEE--EEESCCSHH---H-
T ss_pred HHHHHHHHHHHHHCC--CCEEEEeCCChhH------------HHHHHHHHHHC---C--CCcEE--EecccCCHH---H-
Confidence 345666666666665 9999999987642 23455666542 1 23444 332222332 3
Q ss_pred HHHhccccCCccEEEEecCCccch-h----hhccccc----------cccCCCCCCcCc---hHHHHHHHHHHHHcCCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRY-E----YLDARYK----------EETGGLSGEPLR---NKSTELISEMYKLTKGKL 260 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~-~----~~~~~~~----------~~~gg~sg~~~~---~~~l~~v~~i~~~~~~~i 260 (328)
++.+ .++|+|+| ++..+.... + ...+.+. ....|...-... +..++.++++++.++ ++
T Consensus 76 ~~~a--~~~Gad~i-v~~~~~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~~~~~l~~~~~-~~ 151 (205)
T 1wa3_A 76 CRKA--VESGAEFI-VSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFP-NV 151 (205)
T ss_dssp HHHH--HHHTCSEE-ECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHHHHHHTTCT-TC
T ss_pred HHHH--HHcCCCEE-EcCCCCHHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHhCC-CC
Confidence 4556 67999999 654432100 0 0000000 000111110111 245677888887773 59
Q ss_pred cEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 261 PIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 261 pvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
||++.|||+ ++++.+++.+||++|.+||+++.
T Consensus 152 pvia~GGI~-~~~~~~~~~~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 152 KFVPTGGVN-LDNVCEWFKAGVLAVGVGSALVK 183 (205)
T ss_dssp EEEEBSSCC-TTTHHHHHHHTCSCEEECHHHHC
T ss_pred cEEEcCCCC-HHHHHHHHHCCCCEEEECccccC
Confidence 999999996 78999999999999999999974
No 99
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=98.76 E-value=2.1e-08 Score=99.64 Aligned_cols=94 Identities=21% Similarity=0.231 Sum_probs=77.3
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..++++.+ +++|++.|.+++.... |.++|+ .++.++++++.++ +|||++|||.|++|+
T Consensus 454 ~~e~a~~~--~~~Ga~~il~t~~~~d-------------G~~~G~-----d~~li~~l~~~~~--iPVIasGGi~s~~d~ 511 (555)
T 1jvn_A 454 VWELTRAC--EALGAGEILLNCIDKD-------------GSNSGY-----DLELIEHVKDAVK--IPVIASSGAGVPEHF 511 (555)
T ss_dssp HHHHHHHH--HHTTCCEEEECCGGGT-------------TTCSCC-----CHHHHHHHHHHCS--SCEEECSCCCSHHHH
T ss_pred HHHHHHHH--HHcCCCEEEEeCCCCC-------------CCCCCC-----CHHHHHHHHHhCC--ccEEEECCCCCHHHH
Confidence 67889999 9999999988765432 335554 2688899999887 999999999999999
Q ss_pred HHHHH-hccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 275 FEKIK-AGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 275 ~~~l~-~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
.++++ .||++|++||+++ .++..+.+++ +|+.++|+
T Consensus 512 ~~~~~~~G~~gvivg~a~~-~~~~~~~e~~----~~l~~~gi 548 (555)
T 1jvn_A 512 EEAFLKTRADACLGAGMFH-RGEFTVNDVK----EYLLEHGL 548 (555)
T ss_dssp HHHHHHSCCSEEEESHHHH-TTSCCHHHHH----HHHHHTTC
T ss_pred HHHHHhcCChHHHHHHHHH-cCCCCHHHHH----HHHHHCCC
Confidence 99998 8999999999996 5677777764 46777776
No 100
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=98.75 E-value=4.2e-07 Score=88.36 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
..+.+++...++ +|.|.|..+ + | +-+.+.+.++.|++.. .++||++==. .+ .+-++.
T Consensus 282 ~~eR~~aLv~AG--vD~iviD~a--h--G-----hs~~v~~~i~~ik~~~------p~~~viaGNV--aT----~e~a~~ 338 (556)
T 4af0_A 282 DKDRLKLLAEAG--LDVVVLDSS--Q--G-----NSVYQIEFIKWIKQTY------PKIDVIAGNV--VT----REQAAQ 338 (556)
T ss_dssp HHHHHHHHHHTT--CCEEEECCS--C--C-----CSHHHHHHHHHHHHHC------TTSEEEEEEE--CS----HHHHHH
T ss_pred HHHHHHHHHhcC--CcEEEEecc--c--c-----ccHHHHHHHHHHHhhC------CcceEEeccc--cC----HHHHHH
Confidence 345555555665 999998766 2 1 1234667777777762 4677765321 12 355677
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
| .++|+|+|-+.=...+ ..+ .....|..-|.. .++..+.+.++... +|||+-|||++.-|+.++|.+|
T Consensus 339 L--i~aGAD~vkVGiGpGS-iCt-----Tr~v~GvG~PQ~--tAi~~~a~~a~~~~--vpvIADGGI~~sGDi~KAlaaG 406 (556)
T 4af0_A 339 L--IAAGADGLRIGMGSGS-ICI-----TQEVMAVGRPQG--TAVYAVAEFASRFG--IPCIADGGIGNIGHIAKALALG 406 (556)
T ss_dssp H--HHHTCSEEEECSSCST-TBC-----CTTTCCSCCCHH--HHHHHHHHHHGGGT--CCEEEESCCCSHHHHHHHHHTT
T ss_pred H--HHcCCCEEeecCCCCc-ccc-----cccccCCCCcHH--HHHHHHHHHHHHcC--CCEEecCCcCcchHHHHHhhcC
Confidence 8 8999999976421111 000 001112211110 12222334444454 9999999999999999999999
Q ss_pred cCeeeehhHHh-----------h---------------------------------------------------------
Q psy5880 282 ASLVQIYTSFV-----------Y--------------------------------------------------------- 293 (328)
Q Consensus 282 Ad~V~vg~a~l-----------~--------------------------------------------------------- 293 (328)
||+||+|+.|- +
T Consensus 407 Ad~VMlGsllAGt~EsPGe~~~~~G~~~K~YrGMgS~~Am~~~~~~~~~~~~~~~~~~~~s~dRyfq~~~~~~v~EGveg 486 (556)
T 4af0_A 407 ASAVMMGGLLAGTTESPGEYFYHEGKRVKVYRGMGSIEAMEHTQRGSASGKRSILGLDNAATARYFSEADAVKVAQGVSG 486 (556)
T ss_dssp CSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHTTC------------CCSCSSEEECCCBSSSSCBCCBCEE
T ss_pred CCEEEEchhhccccCCCCcEEEECCEEEEeecccccHHHHHhcccCCcccccccccccccchhhhcccccccccCCccEE
Confidence 99999998552 0
Q ss_pred ----cCc--hHHHHHHHHHHHHHHHhCCCCHHHHhccc
Q psy5880 294 ----HGP--PLVTRIKSELEELLQKEGYNSVSQAVGAA 325 (328)
Q Consensus 294 ----~gp--~~~~~i~~~l~~~m~~~g~~si~e~~G~~ 325 (328)
+|| +++..+..+|+.-|.-.|++||.||+-++
T Consensus 487 ~VpykG~v~~~i~~l~gGlrs~m~y~Ga~~i~el~~~a 524 (556)
T 4af0_A 487 DVADKGSINKFVPYLFTGLQHSLQDAAIKSVSELHSCA 524 (556)
T ss_dssp EEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred eccCCCcHHHHHHHHHHHHHHhhhccCCCcHHHHHHhh
Confidence 011 35677889999999999999999998654
No 101
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=98.71 E-value=4.6e-08 Score=86.31 Aligned_cols=121 Identities=21% Similarity=0.209 Sum_probs=81.6
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe---CCCCChhhHHHHHHHhccccCCccE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI---APDLSLDEKKDIADVVLDSKCKVDG 211 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl---~~~~~~~~~~~~a~~l~~~~~G~d~ 211 (328)
++|.|++.++ . +.-...+.+.+.+-+.+|++++ .+. .+|+ +..++.+++...++.+ .++|+|+
T Consensus 108 GAdEIDmViN---i-g~lk~g~~~~v~~eI~~v~~a~------~~~--~lKVIlEt~~Lt~eei~~a~~ia--~~aGADf 173 (239)
T 3ngj_A 108 GAEEVDMVIN---I-GMVKAKKYDDVEKDVKAVVDAS------GKA--LTKVIIECCYLTNEEKVEVCKRC--VAAGAEY 173 (239)
T ss_dssp TCSEEEEECC---H-HHHHTTCHHHHHHHHHHHHHHH------TTS--EEEEECCGGGSCHHHHHHHHHHH--HHHTCSE
T ss_pred CCCEEEEEee---h-HHhccccHHHHHHHHHHHHHHh------cCC--ceEEEEecCCCCHHHHHHHHHHH--HHHCcCE
Confidence 4899887443 1 1111223345666666676664 222 3443 2347888888999988 9999999
Q ss_pred EEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhH
Q psy5880 212 LIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 212 i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a 290 (328)
|-.+..+ . .|| .+++.++.+++.++.+++|.++|||+|.+|+.+++++||+.++..++
T Consensus 174 VKTSTGf-~------------~gg--------At~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~aGA~riGtS~~ 231 (239)
T 3ngj_A 174 VKTSTGF-G------------THG--------ATPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMINNGASRIGASAG 231 (239)
T ss_dssp EECCCSS-S------------SCC--------CCHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHHTTEEEEEESCH
T ss_pred EECCCCC-C------------CCC--------CCHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHHhcccceecccH
Confidence 9644321 1 011 12466777777776679999999999999999999999998766654
No 102
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=98.71 E-value=3e-07 Score=83.16 Aligned_cols=123 Identities=17% Similarity=0.160 Sum_probs=82.2
Q ss_pred HHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccc
Q psy5880 126 VKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDS 205 (328)
Q Consensus 126 ~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~ 205 (328)
++.+..++ +|+|-+.... . .++.+.++++..++ .++.+++-+. + ..++ +.+ .
T Consensus 128 v~~A~~~G--AD~VlLi~a~-----l----~~~~l~~l~~~a~~--------lGl~~lvev~---t---~ee~-~~A--~ 179 (272)
T 3qja_A 128 IHEARAHG--ADMLLLIVAA-----L----EQSVLVSMLDRTES--------LGMTALVEVH---T---EQEA-DRA--L 179 (272)
T ss_dssp HHHHHHTT--CSEEEEEGGG-----S----CHHHHHHHHHHHHH--------TTCEEEEEES---S---HHHH-HHH--H
T ss_pred HHHHHHcC--CCEEEEeccc-----C----CHHHHHHHHHHHHH--------CCCcEEEEcC---C---HHHH-HHH--H
Confidence 45566666 9999875442 1 12235555555443 3667776653 2 2343 334 4
Q ss_pred cCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCee
Q psy5880 206 KCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLV 285 (328)
Q Consensus 206 ~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V 285 (328)
++|+|.|.+.|+.... + + ..++.+.++.+.++.++|+++.|||+|++|+.+++.+||++|
T Consensus 180 ~~Gad~IGv~~r~l~~--------------~-~-----~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~Gadgv 239 (272)
T 3qja_A 180 KAGAKVIGVNARDLMT--------------L-D-----VDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAV 239 (272)
T ss_dssp HHTCSEEEEESBCTTT--------------C-C-----BCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred HCCCCEEEECCCcccc--------------c-c-----cCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEE
Confidence 6799999888754210 0 0 113456777777754699999999999999999999999999
Q ss_pred eehhHHhhcCch
Q psy5880 286 QIYTSFVYHGPP 297 (328)
Q Consensus 286 ~vg~a~l~~gp~ 297 (328)
.||++++. .++
T Consensus 240 lVGsal~~-a~d 250 (272)
T 3qja_A 240 LVGEGLVT-SGD 250 (272)
T ss_dssp EECHHHHT-CSC
T ss_pred EEcHHHhC-CCC
Confidence 99999984 344
No 103
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=98.70 E-value=4.2e-07 Score=82.15 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcccccEEEEcc--CCCCCcch-------hhhhhh---HHHHHHHHHHHHHHHhhcCCCCCCEEE--E
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNV--SSPNTANL-------RKLQAK---DQLKHLLKTVVETRNQLAVKPLPPILV--K 185 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~--scPn~~g~-------~~~~~~---~~~~~i~~~v~~~~~~~~~~~~~Pv~v--K 185 (328)
+.+.++++...+++ +|+||+++ +.|...|. +.+.++ ....++++++|+.. .++|+.+ +
T Consensus 31 ~~~~~~~~~l~~~G--aD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~------~~~Pv~lm~y 102 (268)
T 1qop_A 31 EQSLKIIDTLIDAG--ADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKH------PTIPIGLLMY 102 (268)
T ss_dssp HHHHHHHHHHHHTT--CSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------SSSCEEEEEC
T ss_pred HHHHHHHHHHHHCC--CCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC------CCCCEEEEEc
Confidence 45666666666666 99999985 44544321 111122 23445666665541 4689876 2
Q ss_pred eCCCCChhhHHHHHHHhccccCCccEEEEecCCccch---------hhh------ccc---------------c--cccc
Q psy5880 186 IAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRY---------EYL------DAR---------------Y--KEET 233 (328)
Q Consensus 186 l~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~---------~~~------~~~---------------~--~~~~ 233 (328)
..+-+. -....+++.+ .++|+|+++++.-..... .+. .|. . -...
T Consensus 103 ~n~v~~-~g~~~~~~~~--~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~g~v~~~s~ 179 (268)
T 1qop_A 103 ANLVFN-NGIDAFYARC--EQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSR 179 (268)
T ss_dssp HHHHHT-TCHHHHHHHH--HHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESS
T ss_pred ccHHHH-hhHHHHHHHH--HHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCCcEEEEec
Confidence 221000 0135677888 889999988764332110 000 000 0 0011
Q ss_pred CCCCCC--cCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 234 GGLSGE--PLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 234 gg~sg~--~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
-|++|. +..+...++++++++..+ +||+..|||+|++++.+++.+|||.|.+||++..
T Consensus 180 ~G~tG~~~~~~~~~~~~i~~lr~~~~--~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~ 239 (268)
T 1qop_A 180 SGVTGAENRGALPLHHLIEKLKEYHA--APALQGFGISSPEQVSAAVRAGAAGAISGSAIVK 239 (268)
T ss_dssp SSCCCSSSCC--CCHHHHHHHHHTTC--CCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred CCcCCCccCCCchHHHHHHHHHhccC--CcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 244453 222334688999999875 9999999999999999999999999999999963
No 104
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=98.68 E-value=5.1e-07 Score=81.53 Aligned_cols=124 Identities=15% Similarity=0.129 Sum_probs=79.1
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeC---CCCChhhHHHHHHHhccccCCccE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIA---PDLSLDEKKDIADVVLDSKCKVDG 211 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~---~~~~~~~~~~~a~~l~~~~~G~d~ 211 (328)
|+|.|++-+.. +.....+.+.+.+-+.+|++++ .-| .+|+- ..++.+++...++.+ .++|+|+
T Consensus 139 GAdEIDmVINi----g~lk~g~~~~v~~eI~~V~~a~-------~~~-~lKVIlEt~~Lt~eei~~A~~ia--~eaGADf 204 (288)
T 3oa3_A 139 GASELDMVMNY----PWLSEKRYTDVFQDIRAVRLAA-------KDA-ILKVILETSQLTADEIIAGCVLS--SLAGADY 204 (288)
T ss_dssp TCSEEEEECCH----HHHHTTCHHHHHHHHHHHHHHT-------TTS-EEEEECCGGGCCHHHHHHHHHHH--HHTTCSE
T ss_pred CCCEEEEEeeh----hhhcCCcHHHHHHHHHHHHHHh-------cCC-CceEEEECCCCCHHHHHHHHHHH--HHcCCCE
Confidence 58988853321 1112233455666667777763 224 46653 246778888888988 9999999
Q ss_pred EEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhH
Q psy5880 212 LIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 212 i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a 290 (328)
|-.+ |.+. ...-.+...+.++++.+.++.+++|.++|||+|.+|+.+++++||+.++..++
T Consensus 205 VKTS-TGf~-----------------~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~RiGtS~g 265 (288)
T 3oa3_A 205 VKTS-TGFN-----------------GPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERLGASAG 265 (288)
T ss_dssp EECC-CSSS-----------------SCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred EEcC-CCCC-----------------CCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 9544 2221 11112233444444443334569999999999999999999999997765544
No 105
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=98.67 E-value=5e-08 Score=86.62 Aligned_cols=87 Identities=16% Similarity=0.236 Sum_probs=68.4
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..++++.+ .++|++.|.++++... |...|+ .++.++++++.++ +|||++|||++++|+
T Consensus 146 ~~e~~~~~--~~~G~~~i~~t~~~~~-------------g~~~g~-----~~~~i~~l~~~~~--iPvia~GGI~~~~d~ 203 (241)
T 1qo2_A 146 PVSLLKRL--KEYGLEEIVHTEIEKD-------------GTLQEH-----DFSLTKKIAIEAE--VKVLAAGGISSENSL 203 (241)
T ss_dssp HHHHHHHH--HTTTCCEEEEEETTHH-------------HHTCCC-----CHHHHHHHHHHHT--CEEEEESSCCSHHHH
T ss_pred HHHHHHHH--HhCCCCEEEEEeeccc-------------ccCCcC-----CHHHHHHHHHhcC--CcEEEECCCCCHHHH
Confidence 56778888 8999999988876432 112332 2688889998887 999999999999999
Q ss_pred HHHHHh-----c-cCeeeehhHHhhcCchHHHHHHH
Q psy5880 275 FEKIKA-----G-ASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 275 ~~~l~~-----G-Ad~V~vg~a~l~~gp~~~~~i~~ 304 (328)
.++++. | ||+|++||+++ +++.-+.++++
T Consensus 204 ~~~~~~~~~~~G~adgv~vgsal~-~~~~~~~~~~~ 238 (241)
T 1qo2_A 204 KTAQKVHTETNGLLKGVIVGRAFL-EGILTVEVMKR 238 (241)
T ss_dssp HHHHHHHHHTTTSEEEEEECHHHH-TTSSCHHHHHH
T ss_pred HHHHhcccccCCeEeEEEeeHHHH-cCCCCHHHHHH
Confidence 999998 9 99999999997 45654555443
No 106
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.66 E-value=1.3e-07 Score=92.64 Aligned_cols=127 Identities=14% Similarity=0.127 Sum_probs=88.5
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.++|+++|-.. + .+-++.+ . |+|+|.+ +...+..... ....|+..+ ...++..+.++.+.++
T Consensus 267 ~~vpvi~k~v~--~----~~~a~~l--~--G~d~v~v-g~g~g~~~~~-----r~~~~~g~~--~~~~l~~~~~~~~~~~ 328 (486)
T 2cu0_A 267 VDADFIVGNIA--N----PKAVDDL--T--FADAVKV-GIGPGSICTT-----RIVAGVGVP--QITAVAMVADRAQEYG 328 (486)
T ss_dssp CCSEEEEEEEC--C----HHHHTTC--T--TSSEEEE-CSSCSTTBCH-----HHHTCCCCC--HHHHHHHHHHHHHHHT
T ss_pred hCCccccCCcC--C----HHHHHHh--h--CCCeEEE-eeeeccceee-----eEEeecCcc--hHHHHHHHHHHHHHcC
Confidence 57899988544 2 2334556 5 9999988 2211100000 001222222 1244566666766665
Q ss_pred CCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh--------------------------------------------
Q psy5880 258 GKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY-------------------------------------------- 293 (328)
Q Consensus 258 ~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~-------------------------------------------- 293 (328)
+|||+.|||.++.|+.++|.+|||+|++|+.|+.
T Consensus 329 --vpVia~GGi~~~~di~kalalGA~~v~~g~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~r~~~g~~~~~ 406 (486)
T 2cu0_A 329 --LYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKT 406 (486)
T ss_dssp --CEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCCC
T ss_pred --CcEEecCCCCCHHHHHHHHHcCCCceeeChhhhcCccCchhheeeCCcEEEEeecCCCHHHHhccccccccccccccc
Confidence 9999999999999999999999999999999872
Q ss_pred -----cCc-----------hHHHHHHHHHHHHHHHhCCCCHHHHhcc
Q psy5880 294 -----HGP-----------PLVTRIKSELEELLQKEGYNSVSQAVGA 324 (328)
Q Consensus 294 -----~gp-----------~~~~~i~~~l~~~m~~~g~~si~e~~G~ 324 (328)
+|. .++..+..+|+.-|...|++++.+|...
T Consensus 407 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~lr~~m~~~G~~~~~~l~~~ 453 (486)
T 2cu0_A 407 RKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEK 453 (486)
T ss_dssp SCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred ccccccceEEeecccCCHHHHHHHHHHHHHHhcccCCcCCHHHHHhh
Confidence 120 2678888999999999999999999753
No 107
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=98.66 E-value=6.4e-07 Score=80.84 Aligned_cols=155 Identities=16% Similarity=0.142 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
...++++..+..+ +++|-+.. .|.. .... .+.++.|++. .++||+.|=-. .+. .++ .
T Consensus 80 dp~~~A~~y~~~G--A~~IsVlt-d~~~----f~Gs----~~~L~~ir~~-------v~lPVl~Kdfi-~d~---~qi-~ 136 (272)
T 3tsm_A 80 DPPALAKAYEEGG--AACLSVLT-DTPS----FQGA----PEFLTAARQA-------CSLPALRKDFL-FDP---YQV-Y 136 (272)
T ss_dssp CHHHHHHHHHHTT--CSEEEEEC-CSTT----TCCC----HHHHHHHHHT-------SSSCEEEESCC-CST---HHH-H
T ss_pred CHHHHHHHHHHCC--CCEEEEec-cccc----cCCC----HHHHHHHHHh-------cCCCEEECCcc-CCH---HHH-H
Confidence 4677777777777 88886522 1111 1112 2334555554 68999988311 221 233 3
Q ss_pred HhccccCCccEEEEecCCccch---h--------hhcc--------cc-c-cccC----CCCCCc--CchHHHHHHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRY---E--------YLDA--------RY-K-EETG----GLSGEP--LRNKSTELISEMY 253 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~---~--------~~~~--------~~-~-~~~g----g~sg~~--~~~~~l~~v~~i~ 253 (328)
.+ ..+|+|+|.+..+..... + +... .. . ...| |..... .....++...++.
T Consensus 137 ea--~~~GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~ga~iIGinnr~l~t~~~dl~~~~~L~ 214 (272)
T 3tsm_A 137 EA--RSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLA 214 (272)
T ss_dssp HH--HHTTCSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTSCCSEEEEECBCTTTCCBCTHHHHHHH
T ss_pred HH--HHcCCCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCEEEECCCCCccCCCChHHHHHHH
Confidence 34 578999988876543210 0 0000 00 0 0000 111000 1122356677787
Q ss_pred HHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHH
Q psy5880 254 KLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTR 301 (328)
Q Consensus 254 ~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~ 301 (328)
+.++.++|+|+.|||+|++|+.++..+||++|.||++++. .++.-..
T Consensus 215 ~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr-~~d~~~~ 261 (272)
T 3tsm_A 215 KMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMR-QHDVAAA 261 (272)
T ss_dssp HHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHT-SSCHHHH
T ss_pred HhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcC-CcCHHHH
Confidence 8887679999999999999999999999999999999984 3554433
No 108
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=98.65 E-value=4.3e-07 Score=82.15 Aligned_cols=60 Identities=22% Similarity=0.164 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCch---HHHHHHHHHHHHH
Q psy5880 246 TELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPP---LVTRIKSELEELL 310 (328)
Q Consensus 246 l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~---~~~~i~~~l~~~m 310 (328)
.++++++++..+ +||++.|||+|++++.++ .|||+|.|||++... -+ .++++.+.++..+
T Consensus 191 ~~~v~~vr~~~~--~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~-~~~~~~~~~fv~~l~~~~ 253 (271)
T 1ujp_A 191 KDLVRRIKARTA--LPVAVGFGVSGKATAAQA--AVADGVVVGSALVRA-LEEGRSLAPLLQEIRQGL 253 (271)
T ss_dssp HHHHHHHHTTCC--SCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHH-HHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcC--CCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhcc-cchHHHHHHHHHHHHHHH
Confidence 478889998875 999999999999999996 999999999999742 12 4666666666555
No 109
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=98.65 E-value=1.2e-07 Score=84.69 Aligned_cols=90 Identities=26% Similarity=0.364 Sum_probs=73.2
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .++|+|.|+++..... .. ..+..++.++++++.++ +||++.|||+++++
T Consensus 31 d~~~~a~~~--~~~Gad~i~v~d~~~~---------------~~---~~~~~~~~i~~i~~~~~--ipvi~~ggI~~~~~ 88 (253)
T 1thf_D 31 DPVELGKFY--SEIGIDELVFLDITAS---------------VE---KRKTMLELVEKVAEQID--IPFTVGGGIHDFET 88 (253)
T ss_dssp CHHHHHHHH--HHTTCCEEEEEESSCS---------------SS---HHHHHHHHHHHHHTTCC--SCEEEESSCCSHHH
T ss_pred CHHHHHHHH--HHcCCCEEEEECCchh---------------hc---CCcccHHHHHHHHHhCC--CCEEEeCCCCCHHH
Confidence 578899999 9999999998863311 00 12355788889988876 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
+.+++++|||.|.+|++.+. +|+++.++.+.+
T Consensus 89 ~~~~~~~Gad~V~lg~~~l~-~p~~~~~~~~~~ 120 (253)
T 1thf_D 89 ASELILRGADKVSINTAAVE-NPSLITQIAQTF 120 (253)
T ss_dssp HHHHHHTTCSEEEESHHHHH-CTHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEChHHHh-ChHHHHHHHHHc
Confidence 99999999999999999984 598888876543
No 110
>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}
Probab=98.63 E-value=7.8e-07 Score=84.43 Aligned_cols=145 Identities=10% Similarity=0.098 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..++|++.++++.+ +++.+.++++| +.+...+++++||++. .++||.++....++.++..+++
T Consensus 147 ~~e~~~~~a~~~~~~Gf~~iKik~g~----------~~~~~~e~v~avr~a~------gd~~l~vD~n~~~~~~~a~~~~ 210 (384)
T 2pgw_A 147 TAEELARDAAVGHAQGERVFYLKVGR----------GEKLDLEITAAVRGEI------GDARLRLDANEGWSVHDAINMC 210 (384)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEECCS----------CHHHHHHHHHHHHTTS------TTCEEEEECTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCC----------CHHHHHHHHHHHHHHc------CCcEEEEecCCCCCHHHHHHHH
Confidence 35667777776655 79999999885 2345677888887762 1689999988889988889999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+.|+++|- .| + .+..++..+++++.++ +||++.+.+.+++++.++++
T Consensus 211 ~~l--~~~~i~~iE-------qP-------------~-----~~~~~~~~~~l~~~~~--iPI~~de~i~~~~~~~~~i~ 261 (384)
T 2pgw_A 211 RKL--EKYDIEFIE-------QP-------------T-----VSWSIPAMAHVREKVG--IPIVADQAAFTLYDVYEICR 261 (384)
T ss_dssp HHH--GGGCCSEEE-------CC-------------S-----CTTCHHHHHHHHHHCS--SCEEESTTCCSHHHHHHHHH
T ss_pred HHH--HhcCCCEEe-------CC-------------C-----ChhhHHHHHHHHhhCC--CCEEEeCCcCCHHHHHHHHH
Confidence 999 899998873 11 1 1123567788888887 99999999999999999999
Q ss_pred hc-cCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 280 AG-ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 280 ~G-Ad~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
.| +|+|++-...+ .|+.-..++.. +.+.+|+
T Consensus 262 ~~~~d~v~ik~~~~-GGit~~~~i~~----~A~~~g~ 293 (384)
T 2pgw_A 262 QRAADMICIGPREI-GGIQPMMKAAA----VAEAAGL 293 (384)
T ss_dssp TTCCSEEEECHHHH-TSHHHHHHHHH----HHHHTTC
T ss_pred cCCCCEEEEcchhh-CCHHHHHHHHH----HHHHCCC
Confidence 87 99999988775 46665555533 3445554
No 111
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=98.60 E-value=3e-07 Score=81.89 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcc-cccEEEEc--cCCCCCcc-------hhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe--CCC
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVN--VSSPNTAN-------LRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI--APD 189 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN--~scPn~~g-------~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl--~~~ 189 (328)
.+...+.++.+.+ |+|.|||. ||-|..+| .|-++++-.+..+++.+++.+ .++|+++-. .+-
T Consensus 27 ~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r------~~~Pivlm~Y~N~i 100 (252)
T 3tha_A 27 LQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIK------TKKALVFMVYYNLI 100 (252)
T ss_dssp HHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCC------CSSEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHh------cCCCEEEEeccCHH
Confidence 3444444444443 59999998 56677543 233445555677777777663 247877631 110
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccc--------------------hhhhcc----------cc--ccccCCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDR--------------------YEYLDA----------RY--KEETGGLS 237 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~--------------------~~~~~~----------~~--~~~~gg~s 237 (328)
+. --+..+++.+ .++|+|++.+-.-.... |.+... .. -...-|..
T Consensus 101 ~~-~G~e~F~~~~--~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~Vs~~GvT 177 (252)
T 3tha_A 101 FS-YGLEKFVKKA--KSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLASIGIT 177 (252)
T ss_dssp HH-HCHHHHHHHH--HHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEEECCSCSS
T ss_pred HH-hhHHHHHHHH--HHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEEEecCCCC
Confidence 00 0144566666 67777776553221110 000000 00 00112344
Q ss_pred CCcC--chHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 238 GEPL--RNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 238 g~~~--~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
|... .....++++++|+..+ +||+..+||++++++.++.. +||+|.|||+++.
T Consensus 178 G~~~~~~~~~~~~v~~vr~~~~--~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk 232 (252)
T 3tha_A 178 GTKSVEEAILQDKVKEIRSFTN--LPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVK 232 (252)
T ss_dssp SCSHHHHHHHHHHHHHHHTTCC--SCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHH
T ss_pred CcccCCCHHHHHHHHHHHHhcC--CcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHH
Confidence 4321 1123567888888865 99999999999999998765 6999999999973
No 112
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=98.59 E-value=1.7e-07 Score=83.54 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=73.5
Q ss_pred hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHH
Q psy5880 193 DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK 272 (328)
Q Consensus 193 ~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~ 272 (328)
+++.++++.+ .++|+|.|+++..... + . ..+..++.++++++.++ +||++.|||++.+
T Consensus 31 ~d~~~~a~~~--~~~Gad~i~v~d~~~~--------------~-~---~~~~~~~~i~~i~~~~~--iPvi~~Ggi~~~~ 88 (252)
T 1ka9_F 31 GDPVEAARAY--DEAGADELVFLDISAT--------------H-E---ERAILLDVVARVAERVF--IPLTVGGGVRSLE 88 (252)
T ss_dssp TCHHHHHHHH--HHHTCSCEEEEECCSS--------------T-T---CHHHHHHHHHHHHTTCC--SCEEEESSCCSHH
T ss_pred CCHHHHHHHH--HHcCCCEEEEEcCCcc--------------c-c---CccccHHHHHHHHHhCC--CCEEEECCcCCHH
Confidence 3578899999 8999999988753211 0 0 12345688899998876 9999999999999
Q ss_pred HHHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 273 DAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 273 da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
++.+++++|||.|.+|++++ .+|+++.++.+..
T Consensus 89 ~~~~~~~~Gad~V~lg~~~l-~~p~~~~~~~~~~ 121 (252)
T 1ka9_F 89 DARKLLLSGADKVSVNSAAV-RRPELIRELADHF 121 (252)
T ss_dssp HHHHHHHHTCSEEEECHHHH-HCTHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEChHHH-hCcHHHHHHHHHc
Confidence 99999999999999999998 4699888876553
No 113
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=98.59 E-value=4.7e-07 Score=85.05 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=40.4
Q ss_pred HHHHHHHhhcCccceEEeccCCCCCcCccCCC-chHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcc
Q psy5880 44 FWLLGILKFGDVAHYFVVNVSSPNTANLRKLQ-AKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLS 111 (328)
Q Consensus 44 ~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~-~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~ 111 (328)
+|....+.....+||+++|+||||++|++.++ +++.+.+++.++++.. ..|+.+|++|+++
T Consensus 144 ~~~~~~~~~~~~ad~ielNiScPn~~g~~~l~~~~~~~~~i~~~v~~~~-------~~pv~vK~~p~~~ 205 (354)
T 3tjx_A 144 MCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVY-------PHSFGVKMPPYFD 205 (354)
T ss_dssp HHHHHHHHHHHHCCEEEEECC---------CTTSHHHHHHHHHHHHHHC-------CSCEEEEECCCCS
T ss_pred HHHHHHHhhhcCCCEEEeeeCCCCCcchhhhccCHHHHHHHHHHHHHHh-------hcccccccCCCCC
Confidence 45444445567899999999999999999887 6677888888888774 4799999999874
No 114
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=98.57 E-value=8.5e-07 Score=79.02 Aligned_cols=121 Identities=20% Similarity=0.172 Sum_probs=80.9
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeC---CCCChhhHHHHHHHhccccCCccE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIA---PDLSLDEKKDIADVVLDSKCKVDG 211 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~---~~~~~~~~~~~a~~l~~~~~G~d~ 211 (328)
|+|.|++-++ . +.-...+.+.+.+-+.+|++++ .+.| +|+- ..++++++...++.+ .++|+|+
T Consensus 124 GAdEIDmViN---i-g~lk~g~~~~v~~eI~~v~~a~------~~~~--lKVIlEt~~Lt~eei~~A~~ia--~eaGADf 189 (260)
T 3r12_A 124 GADEIDMVIN---V-GMLKAKEWEYVYEDIRSVVESV------KGKV--VKVIIETCYLDTEEKIAACVIS--KLAGAHF 189 (260)
T ss_dssp TCSEEEEECC---H-HHHHTTCHHHHHHHHHHHHHHT------TTSE--EEEECCGGGCCHHHHHHHHHHH--HHTTCSE
T ss_pred CCCEEEEEee---h-hhhccccHHHHHHHHHHHHHhc------CCCc--EEEEEeCCCCCHHHHHHHHHHH--HHhCcCE
Confidence 4888876332 1 1111123344555566666663 2344 4642 347888888999988 9999999
Q ss_pred EEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhH
Q psy5880 212 LIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 212 i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a 290 (328)
|-.+ |.+. .+ | .+++.++.+++.++.+++|.++|||+|.+|+.+++++||+-++..++
T Consensus 190 VKTS-TGf~------------~~---G-----AT~edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi~aGA~RiGtS~g 247 (260)
T 3r12_A 190 VKTS-TGFG------------TG---G-----ATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSSG 247 (260)
T ss_dssp EECC-CSSS------------SC---C-----CCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred EEcC-CCCC------------CC---C-----CCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeecchH
Confidence 9544 2221 01 1 12466777888887789999999999999999999999997765544
No 115
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Probab=98.56 E-value=1.6e-06 Score=81.96 Aligned_cols=147 Identities=13% Similarity=0.083 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..+++++.++++.+ +++.+.++++|++ .+...+++++||++. + .++||.++....++.++..+++
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~~---------~~~~~e~v~avr~a~---G--~d~~l~vDan~~~~~~~a~~~~ 211 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRPD---------LKEDVDRVSALREHL---G--DSFPLMVDANMKWTVDGAIRAA 211 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCSS---------HHHHHHHHHHHHHHH---C--TTSCEEEECTTCSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCC---------HHHHHHHHHHHHHHh---C--CCCeEEEECCCCCCHHHHHHHH
Confidence 35566767666654 7999999998742 345677888888774 3 5799999999889988899999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+.|+++|- .| + .+..++..+++++.++ +||++.+.+.+.+++.++++
T Consensus 212 ~~l--~~~~i~~iE-------qP-------------~-----~~~d~~~~~~l~~~~~--iPI~~dE~~~~~~~~~~~i~ 262 (371)
T 2ovl_A 212 RAL--APFDLHWIE-------EP-------------T-----IPDDLVGNARIVRESG--HTIAGGENLHTLYDFHNAVR 262 (371)
T ss_dssp HHH--GGGCCSEEE-------CC-------------S-----CTTCHHHHHHHHHHHC--SCEEECTTCCSHHHHHHHHH
T ss_pred HHH--HhcCCCEEE-------CC-------------C-----CcccHHHHHHHHhhCC--CCEEeCCCCCCHHHHHHHHH
Confidence 999 889998772 11 1 1123567788888887 99999999999999999999
Q ss_pred hc-cCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 280 AG-ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 280 ~G-Ad~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
.| +|+|++-..-+ .|+.-..++. .+.+.+|+
T Consensus 263 ~~~~d~v~ik~~~~-GGi~~~~~i~----~~A~~~gi 294 (371)
T 2ovl_A 263 AGSLTLPEPDVSNI-GGYTTFRKVA----ALAEANNM 294 (371)
T ss_dssp HTCCSEECCCTTTT-TSHHHHHHHH----HHHHHTTC
T ss_pred cCCCCEEeeCcccc-CCHHHHHHHH----HHHHHcCC
Confidence 87 99999987654 4555455543 33445554
No 116
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=98.55 E-value=3.5e-07 Score=81.04 Aligned_cols=89 Identities=24% Similarity=0.289 Sum_probs=72.7
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..++++.+ .++|+|+|+++..... + ...+..++.++++++.++ +||++.|||.++++
T Consensus 34 ~~~~~a~~~--~~~G~d~i~v~~~~~~--------------~----~~~~~~~~~i~~i~~~~~--ipvi~~g~i~~~~~ 91 (253)
T 1h5y_A 34 DPVEMAVRY--EEEGADEIAILDITAA--------------P----EGRATFIDSVKRVAEAVS--IPVLVGGGVRSLED 91 (253)
T ss_dssp CHHHHHHHH--HHTTCSCEEEEECCCC--------------T----TTHHHHHHHHHHHHHHCS--SCEEEESSCCSHHH
T ss_pred cHHHHHHHH--HHcCCCEEEEEeCCcc--------------c----cCCcccHHHHHHHHHhcC--CCEEEECCCCCHHH
Confidence 577889999 8999999998853221 0 112345788899998886 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+.+++++|||+|.+++.++ .+|+++.++.+.
T Consensus 92 ~~~~~~~Gad~V~i~~~~~-~~~~~~~~~~~~ 122 (253)
T 1h5y_A 92 ATTLFRAGADKVSVNTAAV-RNPQLVALLARE 122 (253)
T ss_dssp HHHHHHHTCSEEEESHHHH-HCTHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEChHHh-hCcHHHHHHHHH
Confidence 9999999999999999997 469988877654
No 117
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=98.51 E-value=3.4e-06 Score=75.99 Aligned_cols=130 Identities=18% Similarity=0.131 Sum_probs=79.5
Q ss_pred HHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhc
Q psy5880 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVL 203 (328)
Q Consensus 124 ~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~ 203 (328)
.|++.++.++ +.+.+.+++.. .. +. ..+...++++.+++... .++.++.-..+. . +.++.+
T Consensus 83 ~f~~~a~~ag-g~~~i~l~i~~-d~---~~--~~~e~~~~~~~a~~~~~-----~g~~vi~~~~~~-----~-~~a~~~- 143 (264)
T 1xm3_A 83 RIARLAKASG-LCDMIKVEVIG-CS---RS--LLPDPVETLKASEQLLE-----EGFIVLPYTSDD-----V-VLARKL- 143 (264)
T ss_dssp HHHHHHHHTT-CCSSEEECCBC-CT---TT--CCBCHHHHHHHHHHHHH-----TTCCEEEEECSC-----H-HHHHHH-
T ss_pred HHHHHHHHcC-CCCeEEEeecC-CC---cc--cccchHHHHHHHHHHHC-----CCeEEEEEcCCC-----H-HHHHHH-
Confidence 5666666653 36777776642 11 10 01223455666555421 355555434332 1 235666
Q ss_pred cccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccC
Q psy5880 204 DSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGAS 283 (328)
Q Consensus 204 ~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd 283 (328)
.+.|+|+|...+...+. . .+..+ .+.++++++..+ +||++.|||++++|+.+++++|||
T Consensus 144 -~~~gad~v~~~~~~~Gt----------~-~~~~~-------~~~l~~i~~~~~--iPviv~gGI~t~eda~~~~~~GAd 202 (264)
T 1xm3_A 144 -EELGVHAIMPGASPIGS----------G-QGILN-------PLNLSFIIEQAK--VPVIVDAGIGSPKDAAYAMELGAD 202 (264)
T ss_dssp -HHHTCSCBEECSSSTTC----------C-CCCSC-------HHHHHHHHHHCS--SCBEEESCCCSHHHHHHHHHTTCS
T ss_pred -HHhCCCEEEECCcccCC----------C-CCCCC-------HHHHHHHHhcCC--CCEEEEeCCCCHHHHHHHHHcCCC
Confidence 68899998332221110 0 01111 346777777665 999999999999999999999999
Q ss_pred eeeehhHHhh
Q psy5880 284 LVQIYTSFVY 293 (328)
Q Consensus 284 ~V~vg~a~l~ 293 (328)
+|.|||+++.
T Consensus 203 gViVGSAi~~ 212 (264)
T 1xm3_A 203 GVLLNTAVSG 212 (264)
T ss_dssp EEEESHHHHT
T ss_pred EEEEcHHHhC
Confidence 9999999974
No 118
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A
Probab=98.49 E-value=1.5e-06 Score=81.72 Aligned_cols=147 Identities=12% Similarity=0.059 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..+++++.++++.+ +++.+.++++|++ .+...+++++||++. + .++||.++....++.++..+++
T Consensus 144 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~---------~~~~~e~v~avr~a~---g--~~~~l~vDan~~~~~~~a~~~~ 209 (359)
T 1mdl_A 144 GVKLATERAVTAAELGFRAVKTRIGYPA---------LDQDLAVVRSIRQAV---G--DDFGIMVDYNQSLDVPAAIKRS 209 (359)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCSS---------HHHHHHHHHHHHHHH---C--SSSEEEEECTTCSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCC---------HHHHHHHHHHHHHHh---C--CCCEEEEECCCCCCHHHHHHHH
Confidence 45667777776654 7999999988632 345678888888774 3 5789999999889988889999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+.|+++|- .| + .+..++..+++++.++ +||++.+.+.+++++.++++
T Consensus 210 ~~l--~~~~i~~iE-------~P-------------~-----~~~~~~~~~~l~~~~~--iPI~~de~~~~~~~~~~~i~ 260 (359)
T 1mdl_A 210 QAL--QQEGVTWIE-------EP-------------T-----LQHDYEGHQRIQSKLN--VPVQMGENWLGPEEMFKALS 260 (359)
T ss_dssp HHH--HHHTCSCEE-------CC-------------S-----CTTCHHHHHHHHHTCS--SCEEECTTCCSHHHHHHHHH
T ss_pred HHH--HHhCCCeEE-------CC-------------C-----ChhhHHHHHHHHHhCC--CCEEeCCCCCCHHHHHHHHH
Confidence 999 888988762 11 1 1223567788888887 99999999999999999999
Q ss_pred hc-cCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 280 AG-ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 280 ~G-Ad~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
.| +|+|++-..-+ .|..-..++ ..+.+.+|+
T Consensus 261 ~~~~d~v~ik~~~~-GGi~~~~~i----~~~A~~~g~ 292 (359)
T 1mdl_A 261 IGACRLAMPDAMKI-GGVTGWIRA----SALAQQFGI 292 (359)
T ss_dssp TTCCSEECCBTTTT-THHHHHHHH----HHHHHHTTC
T ss_pred cCCCCEEeecchhh-CCHHHHHHH----HHHHHHcCC
Confidence 87 99999876553 234333443 334455554
No 119
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=98.48 E-value=1.2e-06 Score=76.86 Aligned_cols=122 Identities=17% Similarity=0.164 Sum_probs=81.1
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC---CC----ChhhHHHHHHHhccccC
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP---DL----SLDEKKDIADVVLDSKC 207 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~---~~----~~~~~~~~a~~l~~~~~ 207 (328)
|+|.|++.+. . +.-...+.+.+.+-+.+|++++ .+.| +|+-. .+ +.+++...++.+ .++
T Consensus 93 GAdEIDmVin---i-g~lk~g~~~~v~~ei~~v~~a~------~~~~--lKvIiEt~~L~~~~t~eei~~a~~ia--~~a 158 (231)
T 3ndo_A 93 GATEIDMVID---V-GAALAGDLDAVSADITAVRKAV------RAAT--LKVIVESAALLEFSGEPLLADVCRVA--RDA 158 (231)
T ss_dssp TCSEEEEECC---H-HHHHTTCHHHHHHHHHHHHHHT------TTSE--EEEECCHHHHHHHTCHHHHHHHHHHH--HHT
T ss_pred CCCEEEEEee---h-HhhhcccHHHHHHHHHHHHHHc------cCCc--eEEEEECcccCCCCCHHHHHHHHHHH--HHH
Confidence 5888876433 1 1111123345556666666663 2334 46433 35 777888899988 999
Q ss_pred CccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeee
Q psy5880 208 KVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287 (328)
Q Consensus 208 G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~v 287 (328)
|+|+|-.+..+.. .+| ..++.++.+++.++.+++|-++|||+|.+|+.+++++||+-++.
T Consensus 159 GADfVKTSTGf~~------------~~g--------At~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~aGa~RiGt 218 (231)
T 3ndo_A 159 GADFVKTSTGFHP------------SGG--------ASVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLDAGATRLGL 218 (231)
T ss_dssp TCSEEECCCSCCT------------TCS--------CCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CcCEEEcCCCCCC------------CCC--------CCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhcchhccc
Confidence 9999954322110 011 12567788888887789999999999999999999999997655
Q ss_pred hhH
Q psy5880 288 YTS 290 (328)
Q Consensus 288 g~a 290 (328)
.++
T Consensus 219 S~g 221 (231)
T 3ndo_A 219 SGS 221 (231)
T ss_dssp SSH
T ss_pred chH
Confidence 543
No 120
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=98.47 E-value=4.4e-06 Score=73.48 Aligned_cols=131 Identities=19% Similarity=0.197 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.++++.+..++ +|++.+|...+. +.+.+.++.+++ .++.+++-+.+..+.+. .+.+
T Consensus 77 ~~~i~~~~~ag--ad~v~vH~~~~~----------~~~~~~~~~i~~--------~g~~igv~~~p~t~~e~----~~~~ 132 (228)
T 1h1y_A 77 SDYVEPLAKAG--ASGFTFHIEVSR----------DNWQELIQSIKA--------KGMRPGVSLRPGTPVEE----VFPL 132 (228)
T ss_dssp GGGHHHHHHHT--CSEEEEEGGGCT----------TTHHHHHHHHHH--------TTCEEEEEECTTSCGGG----GHHH
T ss_pred HHHHHHHHHcC--CCEEEECCCCcc----------cHHHHHHHHHHH--------cCCCEEEEEeCCCCHHH----HHHH
Confidence 33555555566 999998866211 111345555544 46788888877655332 2333
Q ss_pred ccccC--CccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 203 LDSKC--KVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 203 ~~~~~--G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+. ++|+|.+..... |.+|....+..++.++++++..+ ++||++.|||+. +.+.+++.+
T Consensus 133 --~~~~~~~d~vl~~sv~p---------------g~~g~~~~~~~l~~i~~~~~~~~-~~pi~v~GGI~~-~ni~~~~~a 193 (228)
T 1h1y_A 133 --VEAENPVELVLVMTVEP---------------GFGGQKFMPEMMEKVRALRKKYP-SLDIEVDGGLGP-STIDVAASA 193 (228)
T ss_dssp --HHSSSCCSEEEEESSCT---------------TCSSCCCCGGGHHHHHHHHHHCT-TSEEEEESSCST-TTHHHHHHH
T ss_pred --HhcCCCCCEEEEEeecC---------------CCCcccCCHHHHHHHHHHHHhcC-CCCEEEECCcCH-HHHHHHHHc
Confidence 344 789886643221 12232223455788888988873 499999999997 899999999
Q ss_pred ccCeeeehhHHhhcCch
Q psy5880 281 GASLVQIYTSFVYHGPP 297 (328)
Q Consensus 281 GAd~V~vg~a~l~~gp~ 297 (328)
|||.|.+||+++. .++
T Consensus 194 GaD~vvvGsai~~-~~d 209 (228)
T 1h1y_A 194 GANCIVAGSSIFG-AAE 209 (228)
T ss_dssp TCCEEEESHHHHT-SSC
T ss_pred CCCEEEECHHHHC-CCC
Confidence 9999999999974 344
No 121
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=98.46 E-value=5.9e-07 Score=78.58 Aligned_cols=95 Identities=16% Similarity=0.245 Sum_probs=63.7
Q ss_pred HHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
+..+ .+.|+|+|.+.+.+... ...|. .+..++.++++++.++ +||++.||| |++++.+++
T Consensus 123 ~~~a--~~~gaD~i~~~~~f~~~-------------~~~g~--~~~~~~~l~~~~~~~~--~pvia~GGI-~~~nv~~~~ 182 (221)
T 1yad_A 123 AVQA--EKEDADYVLFGHVFETD-------------CKKGL--EGRGVSLLSDIKQRIS--IPVIAIGGM-TPDRLRDVK 182 (221)
T ss_dssp HHHH--HHTTCSEEEEECCC-------------------------CHHHHHHHHHHHCC--SCEEEESSC-CGGGHHHHH
T ss_pred HHHH--HhCCCCEEEECCccccC-------------CCCCC--CCCCHHHHHHHHHhCC--CCEEEECCC-CHHHHHHHH
Confidence 3445 67899999876532210 00110 1346788888888775 999999999 999999999
Q ss_pred HhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 279 KAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 279 ~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
++||++|.+||+++. .++ +.+..+.+.+.+.+.++
T Consensus 183 ~~Ga~gv~vgs~i~~-~~d-~~~~~~~~~~~~~~~~~ 217 (221)
T 1yad_A 183 QAGADGIAVMSGIFS-SAE-PLEAARRYSRKLKEMRY 217 (221)
T ss_dssp HTTCSEEEESHHHHT-SSS-HHHHHHHHHHHHHHHC-
T ss_pred HcCCCEEEEhHHhhC-CCC-HHHHHHHHHHHHHHhhh
Confidence 999999999999974 354 23333444455555554
No 122
>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A
Probab=98.46 E-value=2.4e-06 Score=81.19 Aligned_cols=136 Identities=11% Similarity=0.005 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..++|++.++++.+ +++.+.++++++ +.+. .+++++||++. + .++||.++....++.++..+++
T Consensus 164 ~~e~~~~~a~~~~~~Gf~~vKik~g~~---------~~~~-~e~v~avr~a~---g--~d~~l~vDan~~~~~~~a~~~~ 228 (388)
T 2nql_A 164 TLKARGELAKYWQDRGFNAFKFATPVA---------DDGP-AAEIANLRQVL---G--PQAKIAADMHWNQTPERALELI 228 (388)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEGGGC---------TTCH-HHHHHHHHHHH---C--TTSEEEEECCSCSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCCC---------ChHH-HHHHHHHHHHh---C--CCCEEEEECCCCCCHHHHHHHH
Confidence 46777777777654 799999998752 2356 78888888874 3 5799999999889988899999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+.|+++|- .| + .+..++..+++++.++ +||++.+.+.+++++.++++
T Consensus 229 ~~l--~~~~i~~iE-------qP-------------~-----~~~d~~~~~~l~~~~~--iPI~~dE~~~~~~~~~~~i~ 279 (388)
T 2nql_A 229 AEM--QPFDPWFAE-------AP-------------V-----WTEDIAGLEKVSKNTD--VPIAVGEEWRTHWDMRARIE 279 (388)
T ss_dssp HHH--GGGCCSCEE-------CC-------------S-----CTTCHHHHHHHHTSCC--SCEEECTTCCSHHHHHHHHT
T ss_pred HHH--hhcCCCEEE-------CC-------------C-----ChhhHHHHHHHHhhCC--CCEEEeCCcCCHHHHHHHHH
Confidence 999 889988762 11 1 1123567788888886 99999999999999999999
Q ss_pred hc-cCeeeehhHHhhcCchHHHHH
Q psy5880 280 AG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 280 ~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
.| +|+|++-... .|+.-..++
T Consensus 280 ~~~~d~v~ik~~~--GGit~~~~i 301 (388)
T 2nql_A 280 RCRIAIVQPEMGH--KGITNFIRI 301 (388)
T ss_dssp TSCCSEECCCHHH--HCHHHHHHH
T ss_pred cCCCCEEEecCCC--CCHHHHHHH
Confidence 87 9999986654 355544444
No 123
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=98.45 E-value=3.1e-06 Score=74.55 Aligned_cols=148 Identities=18% Similarity=0.206 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.+|++.+..++ +|++.+|.-.+. .+.+.++.+++. +..+.+=+.|..+.+.+ +.+
T Consensus 77 ~~~i~~~~~aG--ad~itvH~Ea~~-----------~~~~~i~~i~~~--------G~k~gval~p~t~~e~l----~~~ 131 (228)
T 3ovp_A 77 EQWVKPMAVAG--ANQYTFHLEATE-----------NPGALIKDIREN--------GMKVGLAIKPGTSVEYL----APW 131 (228)
T ss_dssp GGGHHHHHHHT--CSEEEEEGGGCS-----------CHHHHHHHHHHT--------TCEEEEEECTTSCGGGT----GGG
T ss_pred HHHHHHHHHcC--CCEEEEccCCch-----------hHHHHHHHHHHc--------CCCEEEEEcCCCCHHHH----HHH
Confidence 34555566666 999998754221 145566666653 55677778887664332 223
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhcc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGA 282 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GA 282 (328)
.+ .+|.|.+..... |+.|-...|..++.++++++... +++|...|||+ ++.+.++.++||
T Consensus 132 --l~-~~D~Vl~msv~p---------------Gf~Gq~f~~~~l~ki~~lr~~~~-~~~I~VdGGI~-~~t~~~~~~aGA 191 (228)
T 3ovp_A 132 --AN-QIDMALVMTVEP---------------GFGGQKFMEDMMPKVHWLRTQFP-SLDIEVDGGVG-PDTVHKCAEAGA 191 (228)
T ss_dssp --GG-GCSEEEEESSCT---------------TTCSCCCCGGGHHHHHHHHHHCT-TCEEEEESSCS-TTTHHHHHHHTC
T ss_pred --hc-cCCeEEEeeecC---------------CCCCcccCHHHHHHHHHHHHhcC-CCCEEEeCCcC-HHHHHHHHHcCC
Confidence 22 378775433211 23333334566788999998764 58999999995 899999999999
Q ss_pred CeeeehhHHhhc-Cc-hHHHHHHHHHHHHHHHhCC
Q psy5880 283 SLVQIYTSFVYH-GP-PLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 283 d~V~vg~a~l~~-gp-~~~~~i~~~l~~~m~~~g~ 315 (328)
|.+.+||++... +| ..++++++.+++++.+.+.
T Consensus 192 d~~VvGsaIf~a~dp~~~~~~l~~~~~~~~~~~~~ 226 (228)
T 3ovp_A 192 NMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSL 226 (228)
T ss_dssp CEEEESHHHHTCSCHHHHHHHHHHHHHHHHHHC--
T ss_pred CEEEEeHHHhCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 999999999742 34 3467777777777766543
No 124
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=98.44 E-value=1.6e-07 Score=83.33 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=68.7
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .++|+|.|+++..... +...+ ..++.+++++ .++ +||++.|||++.++
T Consensus 31 ~~~~~a~~~--~~~Gad~i~v~d~~~~-------------~~~~~-----~~~~~i~~i~-~~~--ipvi~~Ggi~~~~~ 87 (241)
T 1qo2_A 31 DPVELVEKL--IEEGFTLIHVVDLSNA-------------IENSG-----ENLPVLEKLS-EFA--EHIQIGGGIRSLDY 87 (241)
T ss_dssp CHHHHHHHH--HHTTCCCEEEEEHHHH-------------HHCCC-----TTHHHHHHGG-GGG--GGEEEESSCCSHHH
T ss_pred CHHHHHHHH--HHcCCCEEEEeccccc-------------ccCCc-----hhHHHHHHHH-hcC--CcEEEECCCCCHHH
Confidence 578899999 8999999998763221 00111 2357778887 666 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i 302 (328)
+.+++++|||.|++|++++. +|+++.++
T Consensus 88 ~~~~~~~Gad~V~lg~~~l~-~p~~~~~~ 115 (241)
T 1qo2_A 88 AEKLRKLGYRRQIVSSKVLE-DPSFLKSL 115 (241)
T ss_dssp HHHHHHTTCCEEEECHHHHH-CTTHHHHH
T ss_pred HHHHHHCCCCEEEECchHhh-ChHHHHHH
Confidence 99999999999999999984 69988887
No 125
>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1
Probab=98.44 E-value=7.6e-06 Score=77.48 Aligned_cols=153 Identities=13% Similarity=0.018 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..+++++.++++.+ +++.+.++++++.. + ..++.+...+++++||++. + .++||.++....++.++..+++
T Consensus 149 ~~e~~~~~a~~~~~~Gf~~iKik~g~~~~-~--~~~~~~~~~e~v~avr~a~---g--~d~~l~vDan~~~~~~~a~~~~ 220 (382)
T 1rvk_A 149 TPEDYGRFAETLVKRGYKGIKLHTWMPPV-S--WAPDVKMDLKACAAVREAV---G--PDIRLMIDAFHWYSRTDALALG 220 (382)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCTTS-T--TCCCHHHHHHHHHHHHHHH---C--TTSEEEEECCTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCcCcc-c--cccchHHHHHHHHHHHHHh---C--CCCeEEEECCCCCCHHHHHHHH
Confidence 45667777766654 69999999987532 1 2234566778888888774 3 5799999999889988899999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCC-HHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFS-GKDAFEKI 278 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s-~~da~~~l 278 (328)
+.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.+ .+++.+++
T Consensus 221 ~~l--~~~~i~~iE-------~P------------------~~~~~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~~i 271 (382)
T 1rvk_A 221 RGL--EKLGFDWIE-------EP------------------MDEQSLSSYKWLSDNLD--IPVVGPESAAGKHWHRAEWI 271 (382)
T ss_dssp HHH--HTTTCSEEE-------CC------------------SCTTCHHHHHHHHHHCS--SCEEECSSCSSHHHHHHHHH
T ss_pred HHH--HhcCCCEEe-------CC------------------CChhhHHHHHHHHhhCC--CCEEEeCCccCcHHHHHHHH
Confidence 999 889998762 11 11223566788888887 99999999999 99999999
Q ss_pred Hhc-cCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 279 KAG-ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 279 ~~G-Ad~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
+.| +|+|++--.-. .|..-..++. .+.+.+|+
T Consensus 272 ~~~~~d~v~ik~~~~-GGit~~~~i~----~~A~~~g~ 304 (382)
T 1rvk_A 272 KAGACDILRTGVNDV-GGITPALKTM----HLAEAFGM 304 (382)
T ss_dssp HTTCCSEEEECHHHH-TSHHHHHHHH----HHHHHTTC
T ss_pred HcCCCCEEeeCchhc-CCHHHHHHHH----HHHHHcCC
Confidence 987 89999876553 3444444443 33445554
No 126
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=98.44 E-value=9.2e-06 Score=73.08 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=89.1
Q ss_pred HHHHHhcccccEEEEcc--CCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC-------CChhhHHH
Q psy5880 127 KGILKFGDVAHYFVVNV--SSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD-------LSLDEKKD 197 (328)
Q Consensus 127 ~~a~~~~~~~d~ieiN~--scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~-------~~~~~~~~ 197 (328)
+.+.+.+ +|.+.+.. ... +.+...+-++++++.++. ..+|+++=.-+. .+.+.+..
T Consensus 99 e~Ai~~G--a~~v~~~~nig~~---------~~~~~~~~~~~v~~~~~~----~~~~vIi~~~~~G~~~~~~~s~~~i~~ 163 (263)
T 1w8s_A 99 EEAVSLG--ASAVGYTIYPGSG---------FEWKMFEELARIKRDAVK----FDLPLVVESFPRGGKVVNETAPEIVAY 163 (263)
T ss_dssp HHHHHTT--CSEEEEEECTTST---------THHHHHHHHHHHHHHHHH----HTCCEEEEECCCSTTCCCTTCHHHHHH
T ss_pred HHHHHCC--CCEEEEEEecCCc---------CHHHHHHHHHHHHHHHHH----cCCeEEEEeeCCCCccccCCCHHHHHH
Confidence 3444445 88887643 411 123344445555555433 367887653221 14555666
Q ss_pred HHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC--CHHHHH
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF--SGKDAF 275 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~--s~~da~ 275 (328)
.++.+ .++|+|+|-++. + + ..+.++++++.++ .+||+++|||+ +.+++.
T Consensus 164 a~~~a--~~~GAD~vkt~~-~---------------~----------~~e~~~~~~~~~~-~~pV~asGGi~~~~~~~~l 214 (263)
T 1w8s_A 164 AARIA--LELGADAMKIKY-T---------------G----------DPKTFSWAVKVAG-KVPVLMSGGPKTKTEEDFL 214 (263)
T ss_dssp HHHHH--HHHTCSEEEEEC-C---------------S----------SHHHHHHHHHHTT-TSCEEEECCSCCSSHHHHH
T ss_pred HHHHH--HHcCCCEEEEcC-C---------------C----------CHHHHHHHHHhCC-CCeEEEEeCCCCCCHHHHH
Confidence 67888 899999986551 1 1 1366777887775 24999999999 999999
Q ss_pred HHH----HhccCeeeehhHHhhcCchHHHHHHHHHHHHH
Q psy5880 276 EKI----KAGASLVQIYTSFVYHGPPLVTRIKSELEELL 310 (328)
Q Consensus 276 ~~l----~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m 310 (328)
+.+ ++||+.+.+||+++. .++ +....+.+...+
T Consensus 215 ~~i~~~~~aGA~GvsvgraI~~-~~d-p~~~~~~l~~~v 251 (263)
T 1w8s_A 215 KQVEGVLEAGALGIAVGRNVWQ-RRD-ALKFARALAELV 251 (263)
T ss_dssp HHHHHHHHTTCCEEEESHHHHT-STT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEehhhcC-CcC-HHHHHHHHHHHH
Confidence 888 899999999999974 455 344445555443
No 127
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=98.41 E-value=4.2e-06 Score=79.23 Aligned_cols=133 Identities=12% Similarity=0.050 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.+ +++.+.+++++ +.+...+++++||++ ++ .++||.++....++.++..++++
T Consensus 146 ~~~~~~~a~~~~~~Gf~~iKik~g~----------~~~~~~e~v~avr~a---~g--~d~~l~vDan~~~~~~~a~~~~~ 210 (379)
T 2rdx_A 146 EAETRAELARHRAAGYRQFQIKVGA----------DWQSDIDRIRACLPL---LE--PGEKAMADANQGWRVDNAIRLAR 210 (379)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECCS----------CHHHHHHHHHHHGGG---SC--TTCEEEEECTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccC----------CHHHHHHHHHHHHHh---cC--CCCEEEEECCCCCCHHHHHHHHH
Confidence 4566666666654 69999999885 234566777777765 33 57999999998899888999999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.|+ +|- .| +. .++..+++++.++ +||++.+.+.+++++.++++.
T Consensus 211 ~l--~~~~i-~iE-------~P-------------~~-------~~~~~~~l~~~~~--iPI~~de~i~~~~~~~~~i~~ 258 (379)
T 2rdx_A 211 AT--RDLDY-ILE-------QP-------------CR-------SYEECQQVRRVAD--QPMKLDECVTGLHMAQRIVAD 258 (379)
T ss_dssp HT--TTSCC-EEE-------CC-------------SS-------SHHHHHHHHTTCC--SCEEECTTCCSHHHHHHHHHH
T ss_pred HH--HhCCe-EEe-------CC-------------cC-------CHHHHHHHHhhCC--CCEEEeCCcCCHHHHHHHHHc
Confidence 99 88888 662 11 11 3567788888887 999999999999999999998
Q ss_pred c-cCeeeehhHHhhcCchHHHHH
Q psy5880 281 G-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 281 G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
| +|+|++-.... .|+.-..++
T Consensus 259 ~~~d~v~ik~~~~-GGit~~~~i 280 (379)
T 2rdx_A 259 RGAEICCLKISNL-GGLSKARRT 280 (379)
T ss_dssp TCCSEEEEETTTT-TSHHHHHHH
T ss_pred CCCCEEEEecccc-CCHHHHHHH
Confidence 7 99999976654 355444444
No 128
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=98.39 E-value=1e-06 Score=78.12 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=70.3
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .++|++.|++...... +.+. +.. +.++++++.++ +|+++.|||.++++
T Consensus 32 d~~~~a~~~--~~~Gad~i~v~~~d~~---------------~~~~---~~~-~~i~~i~~~~~--ipv~v~ggi~~~~~ 88 (244)
T 2y88_A 32 SAVDAALGW--QRDGAEWIHLVDLDAA---------------FGRG---SNH-ELLAEVVGKLD--VQVELSGGIRDDES 88 (244)
T ss_dssp EHHHHHHHH--HHTTCSEEEEEEHHHH---------------TTSC---CCH-HHHHHHHHHCS--SEEEEESSCCSHHH
T ss_pred CHHHHHHHH--HHcCCCEEEEEcCccc---------------ccCC---ChH-HHHHHHHHhcC--CcEEEECCCCCHHH
Confidence 478889999 8999999998752111 1111 122 77888988886 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+.+++++|||.|.+|+.++. +|+++.++.+.
T Consensus 89 ~~~~l~~Gad~V~lg~~~l~-~p~~~~~~~~~ 119 (244)
T 2y88_A 89 LAAALATGCARVNVGTAALE-NPQWCARVIGE 119 (244)
T ss_dssp HHHHHHTTCSEEEECHHHHH-CHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECchHhh-ChHHHHHHHHH
Confidence 99999999999999999974 59888777654
No 129
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=98.39 E-value=2.8e-06 Score=73.66 Aligned_cols=146 Identities=14% Similarity=0.191 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+...+.++.+...+ ++.|++...+|.. .+.++.+++. .+.|+++......+.+ -+
T Consensus 19 ~~~~~~~~~~~~~G--~~~i~l~~~~~~~------------~~~i~~i~~~-------~~~~l~vg~g~~~~~~----~i 73 (212)
T 2v82_A 19 DEALAHVGAVIDAG--FDAVEIPLNSPQW------------EQSIPAIVDA-------YGDKALIGAGTVLKPE----QV 73 (212)
T ss_dssp HHHHHHHHHHHHHT--CCEEEEETTSTTH------------HHHHHHHHHH-------HTTTSEEEEECCCSHH----HH
T ss_pred HHHHHHHHHHHHCC--CCEEEEeCCChhH------------HHHHHHHHHh-------CCCCeEEEeccccCHH----HH
Confidence 34445555555444 9999987665431 1233333333 3568888554444432 34
Q ss_pred HHhccccCCccEEEEecCCccchhhh----cc----------ccccccCCCCCCcCc---hHHHHHHHHHHHHcCCCccE
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYL----DA----------RYKEETGGLSGEPLR---NKSTELISEMYKLTKGKLPI 262 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~----~~----------~~~~~~gg~sg~~~~---~~~l~~v~~i~~~~~~~ipv 262 (328)
+.+ .++|+|+|++.+......... .+ .......|...-.++ +.+++.++++++.++.++||
T Consensus 74 ~~a--~~~Gad~V~~~~~~~~~~~~~~~~g~~~~~g~~t~~e~~~a~~~G~d~v~v~~t~~~g~~~~~~l~~~~~~~ipv 151 (212)
T 2v82_A 74 DAL--ARMGCQLIVTPNIHSEVIRRAVGYGMTVCPGCATATEAFTALEAGAQALKIFPSSAFGPQYIKALKAVLPSDIAV 151 (212)
T ss_dssp HHH--HHTTCCEEECSSCCHHHHHHHHHTTCEEECEECSHHHHHHHHHTTCSEEEETTHHHHCHHHHHHHHTTSCTTCEE
T ss_pred HHH--HHcCCCEEEeCCCCHHHHHHHHHcCCCEEeecCCHHHHHHHHHCCCCEEEEecCCCCCHHHHHHHHHhccCCCeE
Confidence 556 788999997544321100000 00 000011111100011 23467788887776435999
Q ss_pred EEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 263 IGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 263 ia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
++.|||+ ++++.+++++||++|.+||+++.
T Consensus 152 ia~GGI~-~~~i~~~~~~Ga~gv~vGsai~~ 181 (212)
T 2v82_A 152 FAVGGVT-PENLAQWIDAGCAGAGLGSDLYR 181 (212)
T ss_dssp EEESSCC-TTTHHHHHHHTCSEEEECTTTCC
T ss_pred EEeCCCC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 9999997 99999999999999999999974
No 130
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=98.37 E-value=9.6e-07 Score=78.35 Aligned_cols=88 Identities=15% Similarity=0.202 Sum_probs=70.2
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .++|+|.|++...... +.+. +.. +.++++++.++ +|++..|||.++++
T Consensus 33 d~~~~a~~~--~~~Gad~i~v~~~d~~---------------~~~~---~~~-~~i~~i~~~~~--ipv~v~ggI~~~~~ 89 (244)
T 1vzw_A 33 SPLEAALAW--QRSGAEWLHLVDLDAA---------------FGTG---DNR-ALIAEVAQAMD--IKVELSGGIRDDDT 89 (244)
T ss_dssp CHHHHHHHH--HHTTCSEEEEEEHHHH---------------HTSC---CCH-HHHHHHHHHCS--SEEEEESSCCSHHH
T ss_pred CHHHHHHHH--HHcCCCEEEEecCchh---------------hcCC---ChH-HHHHHHHHhcC--CcEEEECCcCCHHH
Confidence 477889999 8999999998752211 1111 123 77888888886 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+.+++++|||.|.+|+..+. +|+++.++.+.
T Consensus 90 ~~~~l~~Gad~V~lg~~~l~-~p~~~~~~~~~ 120 (244)
T 1vzw_A 90 LAAALATGCTRVNLGTAALE-TPEWVAKVIAE 120 (244)
T ss_dssp HHHHHHTTCSEEEECHHHHH-CHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECchHhh-CHHHHHHHHHH
Confidence 99999999999999999974 59888877654
No 131
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=98.36 E-value=9.4e-07 Score=79.34 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcC--chHHHHHHHH
Q psy5880 245 STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHG--PPLVTRIKSE 305 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~g--p~~~~~i~~~ 305 (328)
..+.++++++.+...+||++.|||+|++++.+++.+|||.|.+||+++ ++ |++++++...
T Consensus 213 ~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav-~d~~Pelv~e~a~~ 274 (286)
T 3vk5_A 213 PPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALE-QPDWRSALAEIAGR 274 (286)
T ss_dssp CHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGS-STTHHHHHHHHHC-
T ss_pred CHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhh-cCCCHHHHHHHHHh
Confidence 458899999998223999999999999999999999999999999997 56 7777777643
No 132
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=98.36 E-value=1.8e-06 Score=79.43 Aligned_cols=85 Identities=19% Similarity=0.119 Sum_probs=64.1
Q ss_pred HhHHHHHHHhhcCc-cc-eEEeccCCCCCcCccCCC-chHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccch
Q psy5880 42 LQFWLLGILKFGDV-AH-YFVVNVSSPNTANLRKLQ-AKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDI 118 (328)
Q Consensus 42 l~~y~~~~~~l~~~-~~-~v~~n~sspN~~gl~~~~-~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~ 118 (328)
.++|.+.++.+... +| ++++|+||||+.|.+.++ +++.+.++++++++.. ..|+++|+.++++
T Consensus 105 ~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~-------~~Pv~vKi~~~~~------- 170 (311)
T 1jub_A 105 AAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF-------TKPLGVKLPPYFD------- 170 (311)
T ss_dssp HHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC-------CSCEEEEECCCCS-------
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc-------CCCEEEEECCCCC-------
Confidence 35788888887665 48 999999999998877776 7777888888877542 3699999998752
Q ss_pred hHHHHHHHHHHHHhcccccEEEEc
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVN 142 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN 142 (328)
.+.+.++++.+++++ +|+|.+.
T Consensus 171 ~~~~~~~a~~~~~~G--~d~i~v~ 192 (311)
T 1jub_A 171 LVHFDIMAEILNQFP--LTYVNSV 192 (311)
T ss_dssp HHHHHHHHHHHTTSC--CCEEEEC
T ss_pred HHHHHHHHHHHHHcC--CcEEEec
Confidence 334566666666655 9998763
No 133
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=98.35 E-value=1.3e-05 Score=70.13 Aligned_cols=120 Identities=21% Similarity=0.233 Sum_probs=76.9
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe---CCCCChhhHHHHHHHhccccCCccE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI---APDLSLDEKKDIADVVLDSKCKVDG 211 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl---~~~~~~~~~~~~a~~l~~~~~G~d~ 211 (328)
++|.|++.+. . +.-...+.+.+.+-+.+|++++ .+ + .+|+ +..++.+++...++.+ .++|+|+
T Consensus 84 GAdevd~vin---i-g~~~~g~~~~v~~ei~~v~~a~------~~-~-~lkvIlet~~l~~e~i~~a~~ia--~eaGADf 149 (220)
T 1ub3_A 84 GADEVDMVLH---L-GRAKAGDLDYLEAEVRAVREAV------PQ-A-VLKVILETGYFSPEEIARLAEAA--IRGGADF 149 (220)
T ss_dssp TCSEEEEECC---H-HHHHTTCHHHHHHHHHHHHHHS------TT-S-EEEEECCGGGSCHHHHHHHHHHH--HHHTCSE
T ss_pred CCCEEEeccc---c-hhhhCCCHHHHHHHHHHHHHHH------cC-C-CceEEEecCCCCHHHHHHHHHHH--HHhCCCE
Confidence 4899886443 1 1111123344555555666653 12 2 5552 2346777888999999 9999999
Q ss_pred EEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehh
Q psy5880 212 LIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 212 i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~ 289 (328)
|-.+.. +. .|.+ ..+.++.+++.+..++||.++|||+|.+|+.+++++||+-++..+
T Consensus 150 VKTsTG-f~----------------~~ga----t~~dv~~m~~~vg~~v~VkaaGGirt~~~al~~i~aGa~RiG~S~ 206 (220)
T 1ub3_A 150 LKTSTG-FG----------------PRGA----SLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTSS 206 (220)
T ss_dssp EECCCS-SS----------------SCCC----CHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEETT
T ss_pred EEeCCC-CC----------------CCCC----CHHHHHHHHHhhCCCCeEEEECCCCCHHHHHHHHHCCCcccchhH
Confidence 954321 11 0111 235566677766667999999999999999999999999554443
No 134
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=98.32 E-value=2.8e-06 Score=95.03 Aligned_cols=85 Identities=11% Similarity=0.043 Sum_probs=62.3
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCC-cCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGE-PLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~-~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
....+..+ .++|+|+|++.+-.. ...||..|. ......+..+.++++.++ +|||+.|||.++++
T Consensus 705 a~~~v~~l--~~aG~D~iV~~q~~G-----------~eaGGH~g~~d~~~~~l~lv~~i~~~~~--ipviaaGGI~~g~~ 769 (2060)
T 2uva_G 705 AIQQVINI--AKANPTFPIILQWTG-----------GRGGGHHSFEDFHQPILLMYSRIRKCSN--IVLVAGSGFGGSED 769 (2060)
T ss_dssp HHHHHHHH--HHHCTTSCEEEEECC-----------TTSSSSCCSCCSHHHHHHHHHHHHTSTT--EEEEEESSCCSHHH
T ss_pred HHHHHHHH--HHcCCCEEEEeeeEc-----------ccCCCCCCcccccchHHHHHHHHHHHcC--CCEEEeCCCCCHHH
Confidence 34444555 677888877322111 123555553 233445788899999887 99999999999999
Q ss_pred HHHHH-----------HhccCeeeehhHHhhc
Q psy5880 274 AFEKI-----------KAGASLVQIYTSFVYH 294 (328)
Q Consensus 274 a~~~l-----------~~GAd~V~vg~a~l~~ 294 (328)
+.++| .+|||+|++||.++.-
T Consensus 770 i~aaltg~ws~~~g~palGAdgV~~GT~f~~t 801 (2060)
T 2uva_G 770 TYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTA 801 (2060)
T ss_dssp HHHHHHTCGGGTTTSCCCCCSCEEESGGGGGB
T ss_pred HHHHhcCcchhhcCCCCCCCCEEEEchhhhcC
Confidence 99999 9999999999999853
No 135
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=98.32 E-value=1.2e-05 Score=76.41 Aligned_cols=138 Identities=15% Similarity=0.056 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..++|++.++++.+ +++.+.+++... ..+...+++++||++. + .++||.++....++.++..+++
T Consensus 149 ~~~~~~~~a~~~~~~Gf~~vKik~g~~---------~~~~~~e~v~avR~a~---G--~d~~l~vDan~~~~~~~a~~~~ 214 (391)
T 2qgy_A 149 DTNDYLRQIEKFYGKKYGGIKIYPMLD---------SLSISIQFVEKVREIV---G--DELPLMLDLAVPEDLDQTKSFL 214 (391)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEECCCCS---------SHHHHHHHHHHHHHHH---C--SSSCEEEECCCCSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCC---------hHHHHHHHHHHHHHHh---C--CCCEEEEEcCCCCCHHHHHHHH
Confidence 35677777776654 799999986621 1356678888888773 3 5799999999989988999999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+.|+++|- .| + .+..++..+++++.++ +||++.+.+.+++++.++++
T Consensus 215 ~~l--~~~~i~~iE-------qP-------------~-----~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~ 265 (391)
T 2qgy_A 215 KEV--SSFNPYWIE-------EP-------------V-----DGENISLLTEIKNTFN--MKVVTGEKQSGLVHFRELIS 265 (391)
T ss_dssp HHH--GGGCCSEEE-------CS-------------S-----CTTCHHHHHHHHHHCS--SCEEECTTCCSHHHHHHHHH
T ss_pred HHH--HhcCCCeEe-------CC-------------C-----ChhhHHHHHHHHhhCC--CCEEEcCCcCCHHHHHHHHH
Confidence 999 889998772 11 1 1223567788888887 99999999999999999999
Q ss_pred hc-cCeeeehhHHhhcCchHHHHH
Q psy5880 280 AG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 280 ~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
.| +|+|++-.... .|..-..++
T Consensus 266 ~~~~d~v~ik~~~~-GGit~~~~i 288 (391)
T 2qgy_A 266 RNAADIFNPDISGM-GGLIDIIEI 288 (391)
T ss_dssp TTCCSEECCBTTTS-SCHHHHHHH
T ss_pred cCCCCEEEECcchh-CCHHHHHHH
Confidence 87 99999865543 344444444
No 136
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=98.30 E-value=3.6e-06 Score=73.80 Aligned_cols=58 Identities=9% Similarity=0.077 Sum_probs=52.1
Q ss_pred HHHHHHHHHHc-CCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHH
Q psy5880 246 TELISEMYKLT-KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELE 307 (328)
Q Consensus 246 l~~v~~i~~~~-~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~ 307 (328)
.+.++++++.+ + +||+..|||+|++++.+++ .|||.|.+||++. ++|++++++.+.++
T Consensus 168 ~~~i~~i~~~~~~--~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v-~~p~~~~~~v~a~~ 226 (228)
T 3vzx_A 168 IEAVKKTKAVLET--STLFYGGGIKDAETAKQYA-EHADVIVVGNAVY-EDFDRALKTVAAVK 226 (228)
T ss_dssp HHHHHHHHHHCSS--SEEEEESSCCSHHHHHHHH-TTCSEEEECTHHH-HCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHh-cCHHHHHHHHHHHh
Confidence 58899999988 5 9999999999999999998 7999999999997 57999999887654
No 137
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Probab=98.28 E-value=2.2e-05 Score=74.60 Aligned_cols=128 Identities=9% Similarity=-0.030 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..++|++.++++.+ +++.+.++++-+ +.+...+++++||++. + .++||.++....++.++..+++
T Consensus 162 ~~e~~~~~a~~~~~~Gf~~vKik~g~~---------~~~~~~e~v~avR~av---g--~d~~l~vDan~~~~~~~a~~~~ 227 (393)
T 2og9_A 162 PIDQLMVNASASIERGIGGIKLKVGQP---------DGALDIARVTAVRKHL---G--DAVPLMVDANQQWDRPTAQRMC 227 (393)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCCS---------CHHHHHHHHHHHHHHH---C--TTSCEEEECTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC---------CHHHHHHHHHHHHHHc---C--CCCEEEEECCCCCCHHHHHHHH
Confidence 46677777777654 799999987621 2355678888888874 3 5799999998889988999999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.+++++.++++
T Consensus 228 ~~l--~~~~i~~iE-------~P------------------~~~~~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~ 278 (393)
T 2og9_A 228 RIF--EPFNLVWIE-------EP------------------LDAYDHEGHAALALQFD--TPIATGEMLTSAAEHGDLIR 278 (393)
T ss_dssp HHH--GGGCCSCEE-------CC------------------SCTTCHHHHHHHHHHCS--SCEEECTTCCSHHHHHHHHH
T ss_pred HHH--HhhCCCEEE-------CC------------------CCcccHHHHHHHHHhCC--CCEEeCCCcCCHHHHHHHHH
Confidence 999 889988762 11 11223567788888887 99999999999999999999
Q ss_pred hc-cCeeeehhHH
Q psy5880 280 AG-ASLVQIYTSF 291 (328)
Q Consensus 280 ~G-Ad~V~vg~a~ 291 (328)
.| +|+|++=-.-
T Consensus 279 ~~~~d~v~ik~~~ 291 (393)
T 2og9_A 279 HRAADYLMPDAPR 291 (393)
T ss_dssp TTCCSEECCCHHH
T ss_pred CCCCCEEeeCccc
Confidence 88 9999986544
No 138
>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A
Probab=98.28 E-value=2.7e-05 Score=74.45 Aligned_cols=135 Identities=15% Similarity=0.048 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..+++++.++++.+ +++.+.+++.+.-..+. ...+...+.+++||++ ++ .++||+++....++.++..+++
T Consensus 179 ~~e~~~~~a~~~~~~Gf~~iKik~g~gp~dg~---~~~~~die~v~avRea---vG--~d~~L~vDaN~~~~~~~Ai~~~ 250 (412)
T 3stp_A 179 SIEAMQKEAEEAMKGGYKAFKSRFGYGPKDGM---PGMRENLKRVEAVREV---IG--YDNDLMLECYMGWNLDYAKRML 250 (412)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECCCCGGGHH---HHHHHHHHHHHHHHHH---HC--SSSEEEEECTTCSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccccc---chHHHHHHHHHHHHHH---cC--CCCeEEEECCCCCCHHHHHHHH
Confidence 45677777777655 79999999886311111 1234566777777776 34 6899999999999999999999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ ++.|+++|- .| ..+..++..+++++.++ +||++.+.+.+..++.++++
T Consensus 251 ~~L--e~~~i~~iE-------eP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~li~ 301 (412)
T 3stp_A 251 PKL--APYEPRWLE-------EP------------------VIADDVAGYAELNAMNI--VPISGGEHEFSVIGCAELIN 301 (412)
T ss_dssp HHH--GGGCCSEEE-------CC------------------SCTTCHHHHHHHHHTCS--SCEEECTTCCSHHHHHHHHH
T ss_pred HHH--HhcCCCEEE-------CC------------------CCcccHHHHHHHHhCCC--CCEEeCCCCCCHHHHHHHHH
Confidence 999 889988873 11 11223566788888887 99999999999999999999
Q ss_pred hc-cCeeeehhHHh
Q psy5880 280 AG-ASLVQIYTSFV 292 (328)
Q Consensus 280 ~G-Ad~V~vg~a~l 292 (328)
.| +|.|++--.-.
T Consensus 302 ~~a~D~v~ik~~~~ 315 (412)
T 3stp_A 302 RKAVSVLQYDTNRV 315 (412)
T ss_dssp TTCCSEECCCHHHH
T ss_pred cCCCCEEecChhhc
Confidence 87 99999876553
No 139
>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}
Probab=98.27 E-value=1.7e-05 Score=75.62 Aligned_cols=140 Identities=10% Similarity=0.019 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhh-HHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC--ChhhHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAK-DQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL--SLDEKK 196 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~-~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~--~~~~~~ 196 (328)
..++|++.++++.+ +++.+.++. ||. |. +. +...+++++||++. + .++||.++....+ +.++..
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~iKik~-spv--G~----~~~~~~~e~v~avr~a~---G--~d~~l~vDan~~~~~~~~~a~ 212 (401)
T 2hzg_A 145 TPQETLERARAARRDGFAAVKFGW-GPI--GR----GTVAADADQIMAAREGL---G--PDGDLMVDVGQIFGEDVEAAA 212 (401)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEES-TTT--TS----SCHHHHHHHHHHHHHHH---C--SSSEEEEECTTTTTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEEcC-CCC--CC----CHHHHHHHHHHHHHHHh---C--CCCeEEEECCCCCCCCHHHHH
Confidence 45667777776654 799999996 553 21 23 55678888888774 3 5799999999889 888889
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHH-HcCCCccEEEecCCCCHHHHH
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYK-LTKGKLPIIGVGGVFSGKDAF 275 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~-~~~~~ipvia~GGI~s~~da~ 275 (328)
++++.+ .+.|+++|- .| + .+..++..+++++ .++ +||++.+.+.+++++.
T Consensus 213 ~~~~~l--~~~~i~~iE-------qP-------------~-----~~~d~~~~~~l~~~~~~--iPI~~dE~~~~~~~~~ 263 (401)
T 2hzg_A 213 ARLPTL--DAAGVLWLE-------EP-------------F-----DAGALAAHAALAGRGAR--VRIAGGEAAHNFHMAQ 263 (401)
T ss_dssp TTHHHH--HHTTCSEEE-------CC-------------S-----CTTCHHHHHHHHTTCCS--SEEEECTTCSSHHHHH
T ss_pred HHHHHH--HhcCCCEEE-------CC-------------C-----CccCHHHHHHHHhhCCC--CCEEecCCcCCHHHHH
Confidence 999999 889998772 11 1 1123566788888 776 9999999999999999
Q ss_pred HHHHhc-cCeeeehhHHhhcCchHHHHH
Q psy5880 276 EKIKAG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 276 ~~l~~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
++++.| +|+|++-...+ .|+.-..++
T Consensus 264 ~~i~~~~~d~v~ik~~~~-GGit~~~~i 290 (401)
T 2hzg_A 264 HLMDYGRIGFIQIDCGRI-GGLGPAKRV 290 (401)
T ss_dssp HHHHHSCCSEEEECHHHH-TSHHHHHHH
T ss_pred HHHHCCCCCEEEeCcchh-CCHHHHHHH
Confidence 999987 99999976654 455444444
No 140
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Probab=98.26 E-value=2e-05 Score=74.22 Aligned_cols=145 Identities=13% Similarity=0.087 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHH-HHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKK-DIA 199 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~-~~a 199 (328)
.+++++.++++.. +++.+.++++. +.+...+++++||++. + .++||.++....++.++.. +++
T Consensus 142 ~~~~~~~a~~~~~~Gf~~iKik~g~----------~~~~~~e~v~avr~a~---g--~~~~l~vDan~~~~~~~a~~~~~ 206 (369)
T 2p8b_A 142 PENMAEEAASMIQKGYQSFKMKVGT----------NVKEDVKRIEAVRERV---G--NDIAIRVDVNQGWKNSANTLTAL 206 (369)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCS----------CHHHHHHHHHHHHHHH---C--TTSEEEEECTTTTBSHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCcCEEEEEeCC----------CHHHHHHHHHHHHHHh---C--CCCeEEEECCCCCCHHHHHHHHH
Confidence 4556666666654 79999998873 2455678888888774 3 5789999998888888888 999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+.|+++|- .| + .+..++..+++++.++ +||++.+.+++++++.++++
T Consensus 207 ~~l--~~~~i~~iE-------qP-------------~-----~~~d~~~~~~l~~~~~--iPI~~dE~~~~~~~~~~~i~ 257 (369)
T 2p8b_A 207 RSL--GHLNIDWIE-------QP-------------V-----IADDIDAMAHIRSKTD--LPLMIDEGLKSSREMRQIIK 257 (369)
T ss_dssp HTS--TTSCCSCEE-------CC-------------B-----CTTCHHHHHHHHHTCC--SCEEESTTCCSHHHHHHHHH
T ss_pred HHH--HhCCCcEEE-------CC-------------C-----CcccHHHHHHHHHhCC--CCEEeCCCCCCHHHHHHHHH
Confidence 999 889988762 11 1 1123566788888887 99999999999999999999
Q ss_pred hc-cCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 280 AG-ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 280 ~G-Ad~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
.| +|+|++-..-+ .|..-..++. .+.+.+|+
T Consensus 258 ~~~~d~v~ik~~~~-GGit~~~~i~----~~A~~~g~ 289 (369)
T 2p8b_A 258 LEAADKVNIKLMKC-GGIYPAVKLA----HQAEMAGI 289 (369)
T ss_dssp HTCCSEEEECHHHH-TSHHHHHHHH----HHHHHTTC
T ss_pred hCCCCEEEeecchh-CCHHHHHHHH----HHHHHcCC
Confidence 87 99999977664 4554444443 33445554
No 141
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=98.25 E-value=2.7e-05 Score=68.34 Aligned_cols=130 Identities=22% Similarity=0.229 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcccccEEEEccC--CCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVS--SPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~s--cPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.++++.+..++ +|++.+|.. .+.. ..++++.+++ .++.+++=+.+..+.+. .+
T Consensus 81 ~~~v~~~~~~G--ad~v~vh~~~~~~~~-----------~~~~~~~~~~--------~g~~ig~~~~p~t~~e~----~~ 135 (230)
T 1rpx_A 81 DQRVPDFIKAG--ADIVSVHCEQSSTIH-----------LHRTINQIKS--------LGAKAGVVLNPGTPLTA----IE 135 (230)
T ss_dssp HHHHHHHHHTT--CSEEEEECSTTTCSC-----------HHHHHHHHHH--------TTSEEEEEECTTCCGGG----GT
T ss_pred HHHHHHHHHcC--CCEEEEEecCccchh-----------HHHHHHHHHH--------cCCcEEEEeCCCCCHHH----HH
Confidence 46777777776 999998765 3211 2344555543 34667777766544322 22
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC---CCccEEEecCCCCHHHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK---GKLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~---~~ipvia~GGI~s~~da~~~ 277 (328)
. ...++|+|.+..... |+.|....+..++.++++++.++ .++|+++.|||+ ++.+.++
T Consensus 136 ~---~~~~~d~vl~~~~~p---------------g~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~ 196 (230)
T 1rpx_A 136 Y---VLDAVDLVLIMSVNP---------------GFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKV 196 (230)
T ss_dssp T---TTTTCSEEEEESSCT---------------TCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHH
T ss_pred H---HHhhCCEEEEEEEcC---------------CCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHH
Confidence 2 346789875443221 12232222345666777777651 139999999998 8999999
Q ss_pred HHhccCeeeehhHHhhcCch
Q psy5880 278 IKAGASLVQIYTSFVYHGPP 297 (328)
Q Consensus 278 l~~GAd~V~vg~a~l~~gp~ 297 (328)
+++|||.|.+||++.. .++
T Consensus 197 ~~aGad~vvvgSaI~~-a~d 215 (230)
T 1rpx_A 197 IEAGANALVAGSAVFG-APD 215 (230)
T ss_dssp HHHTCCEEEESHHHHT-SSC
T ss_pred HHcCCCEEEEChhhhC-CCC
Confidence 9999999999999974 344
No 142
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=98.23 E-value=1.4e-05 Score=70.92 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=55.3
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCC-ccEEEecCCCCHHHHH
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGK-LPIIGVGGVFSGKDAF 275 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~-ipvia~GGI~s~~da~ 275 (328)
.+++.+ .++|++.|.--+... |+ |..+. +-++++.+++.. .+ +|||.-|||.+++|+.
T Consensus 136 ~~ak~l--~~~G~~aVmPlg~pI--------------Gs--G~Gi~--~~~~L~~i~~~~-~~~vPVI~~GGI~tpsDAa 194 (268)
T 2htm_A 136 VLAKRL--AALGTATVMPLAAPI--------------GS--GWGVR--TRALLELFAREK-ASLPPVVVDAGLGLPSHAA 194 (268)
T ss_dssp HHHHHH--HHHTCSCBEEBSSST--------------TT--CCCST--THHHHHHHHHTT-TTSSCBEEESCCCSHHHHH
T ss_pred HHHHHH--HhcCCCEEEecCccC--------------cC--CcccC--CHHHHHHHHHhc-CCCCeEEEeCCCCCHHHHH
Confidence 678888 889999884322211 11 22221 134577777732 24 9999999999999999
Q ss_pred HHHHhccCeeeehhHHhh
Q psy5880 276 EKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 276 ~~l~~GAd~V~vg~a~l~ 293 (328)
+++++|||+|++||++..
T Consensus 195 ~AmeLGAdgVlVgSAI~~ 212 (268)
T 2htm_A 195 EVMELGLDAVLVNTAIAE 212 (268)
T ss_dssp HHHHTTCCEEEESHHHHT
T ss_pred HHHHcCCCEEEEChHHhC
Confidence 999999999999999973
No 143
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=98.23 E-value=6.4e-06 Score=71.45 Aligned_cols=56 Identities=7% Similarity=-0.022 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 246 TELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 246 l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
+++++.+++.++ ++|+++.|||+ ++++.+++++||+.|.++|+++..++.-+.+..
T Consensus 139 ~~~lk~l~~~~~-~ipvvaiGGI~-~~n~~~~l~aGa~~vavgSai~~~d~~~i~~~a 194 (207)
T 2yw3_A 139 VRVLRAYAEVFP-EVRFLPTGGIK-EEHLPHYAALPNLLAVGGSWLLQGNLEAVRAKV 194 (207)
T ss_dssp HHHHHHHHHHCT-TCEEEEBSSCC-GGGHHHHHTCSSBSCEEESGGGSSCHHHHHHHH
T ss_pred HHHHHHHHhhCC-CCcEEEeCCCC-HHHHHHHHhCCCcEEEEehhhhCCCHHHHHHHH
Confidence 567888888874 49999999997 799999999999999999998753232244433
No 144
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=98.21 E-value=3.2e-06 Score=83.99 Aligned_cols=93 Identities=20% Similarity=0.156 Sum_probs=74.9
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH--
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG-- 271 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~-- 271 (328)
+..++|+.+ .+.|++++++.+-. +..+++..++.+++.++++++.++ +||+..|||++.
T Consensus 281 dp~~~A~~~--~~~Ga~~l~~~dl~---------------~~~~~~~~~~~~~~~i~~i~~~~~--ipi~vgGGIr~~~d 341 (555)
T 1jvn_A 281 KPVQLAQKY--YQQGADEVTFLNIT---------------SFRDCPLKDTPMLEVLKQAAKTVF--VPLTVGGGIKDIVD 341 (555)
T ss_dssp HHHHHHHHH--HHTTCSEEEEEEEC------------------CCCGGGCHHHHHHHHHTTTCC--SCEEEESSCSCEEC
T ss_pred CHHHHHHHH--HHcCCCEEEEEeCC---------------ccccccCCCchHHHHHHHHHhhCC--CcEEEeCccccchh
Confidence 678899999 89999999987632 223445555667899999988887 999999999998
Q ss_pred ---------HHHHHHHHhccCeeeehhHHhhc------------CchHHHHHHHH
Q psy5880 272 ---------KDAFEKIKAGASLVQIYTSFVYH------------GPPLVTRIKSE 305 (328)
Q Consensus 272 ---------~da~~~l~~GAd~V~vg~a~l~~------------gp~~~~~i~~~ 305 (328)
+++.+++++|||.|.++|+.+.+ +|++++++.+.
T Consensus 342 ~~~~~~~~~~~a~~~l~aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 396 (555)
T 1jvn_A 342 VDGTKIPALEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKA 396 (555)
T ss_dssp TTCCEECHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHH
T ss_pred cccccchHHHHHHHHHHcCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHH
Confidence 55999999999999999998753 47888887654
No 145
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=98.21 E-value=3.2e-05 Score=67.22 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=78.1
Q ss_pred HHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhcc
Q psy5880 125 SVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLD 204 (328)
Q Consensus 125 ~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~ 204 (328)
+++.+..++ +|++.+|...+. ...++++.+++ .+.++++=+.+..+.+ .++.+
T Consensus 76 ~i~~~~~~g--ad~v~vh~~~~~-----------~~~~~~~~~~~--------~g~~i~~~~~~~t~~e----~~~~~-- 128 (220)
T 2fli_A 76 YVEAFAQAG--ADIMTIHTESTR-----------HIHGALQKIKA--------AGMKAGVVINPGTPAT----ALEPL-- 128 (220)
T ss_dssp GHHHHHHHT--CSEEEEEGGGCS-----------CHHHHHHHHHH--------TTSEEEEEECTTSCGG----GGGGG--
T ss_pred HHHHHHHcC--CCEEEEccCccc-----------cHHHHHHHHHH--------cCCcEEEEEcCCCCHH----HHHHH--
Confidence 446666676 999998876321 12344444443 2456676675543322 22333
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC---CCccEEEecCCCCHHHHHHHHHhc
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK---GKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~---~~ipvia~GGI~s~~da~~~l~~G 281 (328)
..++|+|.+..+..+ +.|....+..++.++++++... .++|+++.|||+ ++++.+++++|
T Consensus 129 -~~~~d~vl~~~~~~g---------------~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~G 191 (220)
T 2fli_A 129 -LDLVDQVLIMTVNPG---------------FGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAG 191 (220)
T ss_dssp -TTTCSEEEEESSCTT---------------CSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHT
T ss_pred -HhhCCEEEEEEECCC---------------CcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcC
Confidence 456898855333221 2222111233455666665541 139999999999 89999999999
Q ss_pred cCeeeehhHHhhcCch
Q psy5880 282 ASLVQIYTSFVYHGPP 297 (328)
Q Consensus 282 Ad~V~vg~a~l~~gp~ 297 (328)
||.|.+||+++ +.++
T Consensus 192 ad~vvvGsai~-~~~d 206 (220)
T 2fli_A 192 ANVFVAGSYLF-KASD 206 (220)
T ss_dssp CCEEEESHHHH-TSSC
T ss_pred CCEEEEChHHh-CCCC
Confidence 99999999997 4455
No 146
>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B
Probab=98.21 E-value=3e-05 Score=73.25 Aligned_cols=134 Identities=10% Similarity=0.024 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.+ +++.+.++++||. .+...+++++||++ ++ .++||.++....++.++..++++
T Consensus 146 ~e~~~~~a~~~~~~Gf~~iKik~g~~~---------~~~~~e~v~avr~a---~g--~~~~l~vDan~~~~~~~a~~~~~ 211 (378)
T 2qdd_A 146 PDQMLGLIAEAAAQGYRTHSAKIGGSD---------PAQDIARIEAISAG---LP--DGHRVTFDVNRAWTPAIAVEVLN 211 (378)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCSSC---------HHHHHHHHHHHHHS---CC--TTCEEEEECTTCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhheeecCCCCC---------hHHHHHHHHHHHHH---hC--CCCEEEEeCCCCCCHHHHHHHHH
Confidence 4566666666544 6999999998752 34556777777775 33 47899999988899888888888
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ . .|+ +|- .| +. .++..+++++.++ +||++.+.+.+++++.++++.
T Consensus 212 ~l--~-~~i-~iE-------qP-------------~~-------d~~~~~~l~~~~~--iPI~~dE~~~~~~~~~~~i~~ 258 (378)
T 2qdd_A 212 SV--R-ARD-WIE-------QP-------------CQ-------TLDQCAHVARRVA--NPIMLDECLHEFSDHLAAWSR 258 (378)
T ss_dssp SC--C-CCC-EEE-------CC-------------SS-------SHHHHHHHHTTCC--SCEEECTTCCSHHHHHHHHHH
T ss_pred Hh--C-CCc-EEE-------cC-------------CC-------CHHHHHHHHHhCC--CCEEECCCcCCHHHHHHHHHh
Confidence 88 7 777 551 11 11 3567788888876 999999999999999999987
Q ss_pred c-cCeeeehhHHhhcCchHHHHHH
Q psy5880 281 G-ASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 281 G-Ad~V~vg~a~l~~gp~~~~~i~ 303 (328)
| +|+|++-...+ .|+.-..++.
T Consensus 259 ~~~d~v~ik~~~~-GGi~~~~~i~ 281 (378)
T 2qdd_A 259 GACEGVKIKPNRV-GGLTRARQIR 281 (378)
T ss_dssp TCCSEEEECHHHH-TSHHHHHHHH
T ss_pred CCCCEEEeccccc-CCHHHHHHHH
Confidence 7 99999987664 4565555553
No 147
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=98.20 E-value=2.4e-06 Score=75.99 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=53.1
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCe
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASL 284 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~ 284 (328)
.+.|+|+|.+.+.+... +.+...+.+++.++++++....++||++.||| +++++.+++.+||++
T Consensus 152 ~~~GaDyI~vgpvf~T~---------------tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~g 215 (243)
T 3o63_A 152 AAGDADYFCVGPCWPTP---------------TKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARR 215 (243)
T ss_dssp HHSSCSEEEECCSSCCC---------------C-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCC
T ss_pred hhCCCCEEEEcCccCCC---------------CCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCE
Confidence 57899999876533220 11111123467778777652124999999999 999999999999999
Q ss_pred eeehhHHhhcCch
Q psy5880 285 VQIYTSFVYHGPP 297 (328)
Q Consensus 285 V~vg~a~l~~gp~ 297 (328)
|.++++++. .++
T Consensus 216 vav~sai~~-a~d 227 (243)
T 3o63_A 216 IVVVRAITS-ADD 227 (243)
T ss_dssp EEESHHHHT-CSS
T ss_pred EEEeHHHhC-CCC
Confidence 999999974 344
No 148
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=98.18 E-value=1.9e-05 Score=69.18 Aligned_cols=134 Identities=19% Similarity=0.194 Sum_probs=78.9
Q ss_pred hcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe---CCCCChhhHHHHHHHhccccCC
Q psy5880 132 FGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI---APDLSLDEKKDIADVVLDSKCK 208 (328)
Q Consensus 132 ~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl---~~~~~~~~~~~~a~~l~~~~~G 208 (328)
...++|.|++-+. . +.-...+.+.+.+-+.+|++++ .+ ..+|+ ...++.+++...++.+ .++|
T Consensus 76 i~~GAdEID~Vin---i-g~~~~g~~~~v~~ei~~v~~a~------~~--~~lKvIlEt~~Lt~eei~~a~~ia--~eaG 141 (226)
T 1vcv_A 76 LAEVADEIDVVAP---I-GLVKSRRWAEVRRDLISVVGAA------GG--RVVKVITEEPYLRDEERYTLYDII--AEAG 141 (226)
T ss_dssp HTTTCSEEEEECC---H-HHHHTTCHHHHHHHHHHHHHHT------TT--SEEEEECCGGGCCHHHHHHHHHHH--HHHT
T ss_pred HHCCCCEEEEecc---h-hhhcCCCHHHHHHHHHHHHHHH------cC--CCceEEEeccCCCHHHHHHHHHHH--HHcC
Confidence 3346888876333 1 1111223345555566666663 12 25552 2346777888999999 9999
Q ss_pred ccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHH---cCCCccEEEecCCCCHHHHHHHHHh---cc
Q psy5880 209 VDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKL---TKGKLPIIGVGGVFSGKDAFEKIKA---GA 282 (328)
Q Consensus 209 ~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~---~~~~ipvia~GGI~s~~da~~~l~~---GA 282 (328)
+|+|-.+..+.. .+... . .|..|.+ . ++.++.+++. ++.+++|-++|||+|.+|+.+++++ ||
T Consensus 142 ADfVKTSTGf~~-~~~~~-----~-~~~~~gA-t---~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga 210 (226)
T 1vcv_A 142 AHFIKSSTGFAE-EAYAA-----R-QGNPVHS-T---PERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGE 210 (226)
T ss_dssp CSEEECCCSCCC-HHHHH-----H-TTCCSSC-C---HHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCS
T ss_pred CCEEEeCCCCCc-ccccc-----c-cCCCCCC-C---HHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHCCC
Confidence 999954432210 00000 0 0111111 1 3344444444 6667999999999999999999999 99
Q ss_pred C----eeeehhH
Q psy5880 283 S----LVQIYTS 290 (328)
Q Consensus 283 d----~V~vg~a 290 (328)
+ -++..++
T Consensus 211 ~~~~fRiGtS~~ 222 (226)
T 1vcv_A 211 DPARVRLGTSTP 222 (226)
T ss_dssp CTTTEEEEESCG
T ss_pred CcCCceEecCch
Confidence 9 6655443
No 149
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=98.18 E-value=1.2e-05 Score=70.83 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=84.9
Q ss_pred HHHHHHHHHhcccccEEEEccC--CCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVS--SPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~s--cPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+|++.+..++ +|++.++.. .+. ...+.++.+++ .++-+++=+.|..+.+. .+
T Consensus 75 ~~~i~~~~~aG--adgv~vh~e~~~~~-----------~~~~~~~~i~~--------~g~~~gv~~~p~t~~e~----~~ 129 (230)
T 1tqj_A 75 EKYVEDFAKAG--ADIISVHVEHNASP-----------HLHRTLCQIRE--------LGKKAGAVLNPSTPLDF----LE 129 (230)
T ss_dssp GGTHHHHHHHT--CSEEEEECSTTTCT-----------THHHHHHHHHH--------TTCEEEEEECTTCCGGG----GT
T ss_pred HHHHHHHHHcC--CCEEEECcccccch-----------hHHHHHHHHHH--------cCCcEEEEEeCCCcHHH----HH
Confidence 45667777777 999998765 221 13355555554 35667777777654322 22
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC---CCccEEEecCCCCHHHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK---GKLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~---~~ipvia~GGI~s~~da~~~ 277 (328)
.+ ..++|+|.+.....+ .+|....+..++.++++++..+ .++||.+-|||+. +.+.++
T Consensus 130 ~~---~~~~D~v~~msv~pg---------------~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~ 190 (230)
T 1tqj_A 130 YV---LPVCDLILIMSVNPG---------------FGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQV 190 (230)
T ss_dssp TT---GGGCSEEEEESSCC-------------------CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHH
T ss_pred HH---HhcCCEEEEEEeccc---------------cCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHH
Confidence 22 347898755433221 2222223456788888887761 1399999999998 999999
Q ss_pred HHhccCeeeehhHHhhcCch
Q psy5880 278 IKAGASLVQIYTSFVYHGPP 297 (328)
Q Consensus 278 l~~GAd~V~vg~a~l~~gp~ 297 (328)
.++|||.+.+||+++. .++
T Consensus 191 ~~aGad~vvvGSai~~-a~d 209 (230)
T 1tqj_A 191 LEAGANAIVAGSAVFN-APN 209 (230)
T ss_dssp HHHTCCEEEESHHHHT-SSC
T ss_pred HHcCCCEEEECHHHHC-CCC
Confidence 9999999999999974 344
No 150
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Probab=98.18 E-value=3.8e-05 Score=73.95 Aligned_cols=147 Identities=5% Similarity=0.006 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCc--chh-hhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTA--NLR-KLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKK 196 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~--g~~-~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~ 196 (328)
..+++++.++++.+ ++..+-+++++|... |.. ..++.+...+++++||++. + .+++|.++....++.++..
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d~e~v~avR~av---G--~d~~L~vDan~~~t~~~A~ 220 (433)
T 3rcy_A 146 SADMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAV---G--DKADLLFGTHGQFTTAGAI 220 (433)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHH---T--TSSEEEECCCSCBCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCcccccCCCcchhhHHHHHHHHHHHHHHh---C--CCCeEEEeCCCCCCHHHHH
Confidence 35566666655543 699999999987532 111 1123455667777777764 4 6889999999889998999
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHH
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFE 276 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~ 276 (328)
++++.+ ++.|+++|- .| ..+..++..+++++.++ +||++.+.+.+..++.+
T Consensus 221 ~~~~~L--e~~~i~~iE-------eP------------------~~~~~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~ 271 (433)
T 3rcy_A 221 RLGQAI--EPYSPLWYE-------EP------------------VPPDNVGAMAQVARAVR--IPVATGERLTTKAEFAP 271 (433)
T ss_dssp HHHHHH--GGGCCSEEE-------CC------------------SCTTCHHHHHHHHHHSS--SCEEECTTCCSHHHHHH
T ss_pred HHHHHh--hhcCCCEEE-------CC------------------CChhhHHHHHHHHhccC--CCEEecCCCCCHHHHHH
Confidence 999999 889988873 11 11223567788888887 99999999999999999
Q ss_pred HHHhc-cCeeeehhHHhhcCchHHHHH
Q psy5880 277 KIKAG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 277 ~l~~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
+++.| +|.|++--.-. .|..-..++
T Consensus 272 ~l~~g~~D~v~~d~~~~-GGit~~~ki 297 (433)
T 3rcy_A 272 VLREGAAAILQPALGRA-GGIWEMKKV 297 (433)
T ss_dssp HHHTTCCSEECCCHHHH-THHHHHHHH
T ss_pred HHHcCCCCEEEeCchhc-CCHHHHHHH
Confidence 99987 99999875543 233334443
No 151
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=98.17 E-value=2.9e-06 Score=76.19 Aligned_cols=89 Identities=26% Similarity=0.276 Sum_probs=68.3
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .++|++.|.++..... +...| ..++.++++++.++ +||+..|||.+.++
T Consensus 31 ~~~~~a~~~--~~~Ga~~i~v~d~~~~-------------~~~~g-----~~~~~i~~i~~~~~--iPvi~~ggi~~~~~ 88 (266)
T 2w6r_A 31 LLRDWVVEV--EKRGAGEILLTSIDRD-------------GTKSG-----YDTEMIRFVRPLTT--LPIIASGGAGKMEH 88 (266)
T ss_dssp EHHHHHHHH--HHHTCSEEEEEETTTS-------------SCSSC-----CCHHHHHHHGGGCC--SCEEEESCCCSTHH
T ss_pred CHHHHHHHH--HHCCCCEEEEEecCcc-------------cCCCc-----ccHHHHHHHHHhcC--CCEEEECCCCCHHH
Confidence 578899999 8999999998653211 11122 13578888888876 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhc--CchHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYH--GPPLVTRIKS 304 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~--gp~~~~~i~~ 304 (328)
+.+++++|||.|.+|++++.. +|++++++.+
T Consensus 89 i~~~~~~Gad~v~lg~~~~~~~~~~~~~~~~~~ 121 (266)
T 2w6r_A 89 FLEAFLAGADKALAASVFHFREIDMRELKEYLK 121 (266)
T ss_dssp HHHHHHHTCSEEECCCCC------CHHHHHHCC
T ss_pred HHHHHHcCCcHhhhhHHHHhCCCCHHHHHHHHH
Confidence 999999999999999998733 5888777643
No 152
>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1
Probab=98.17 E-value=5.3e-05 Score=71.33 Aligned_cols=137 Identities=9% Similarity=0.085 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhc--ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 122 VLDSVKGILKFG--DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 122 i~~~~~~a~~~~--~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
.+++++.++++. .+++.+.+++++++ .+...+++++||++. + .+++|.++....++.++..+++
T Consensus 143 ~e~~~~~a~~~~~~~Gf~~iKik~g~~~---------~~~~~e~v~avr~a~---g--~~~~l~vDan~~~~~~~a~~~~ 208 (370)
T 1nu5_A 143 TARDIDSALEMIETRRHNRFKVKLGART---------PAQDLEHIRSIVKAV---G--DRASVRVDVNQGWDEQTASIWI 208 (370)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEECSSSC---------HHHHHHHHHHHHHHH---G--GGCEEEEECTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccEEEEecCCCC---------hHHHHHHHHHHHHhc---C--CCCEEEEECCCCCCHHHHHHHH
Confidence 345555555542 35999999988642 234567888888764 3 4689999998889988888999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+++.+++.++++
T Consensus 209 ~~l--~~~~i~~iE-------qP------------------~~~~~~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~i~ 259 (370)
T 1nu5_A 209 PRL--EEAGVELVE-------QP------------------VPRANFGALRRLTEQNG--VAILADESLSSLSSAFELAR 259 (370)
T ss_dssp HHH--HHHTCCEEE-------CC------------------SCTTCHHHHHHHHHHCS--SEEEESTTCCSHHHHHHHHH
T ss_pred HHH--HhcCcceEe-------CC------------------CCcccHHHHHHHHHhCC--CCEEeCCCCCCHHHHHHHHH
Confidence 999 888888762 11 11223566788888887 99999999999999999999
Q ss_pred hc-cCeeeehhHHhhcCchHHHHH
Q psy5880 280 AG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 280 ~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
.| +|.|++--.-. .|..-..++
T Consensus 260 ~~~~d~v~ik~~~~-GGit~~~~i 282 (370)
T 1nu5_A 260 DHAVDAFSLKLCNM-GGIANTLKV 282 (370)
T ss_dssp TTCCSEEEECHHHH-TSHHHHHHH
T ss_pred hCCCCEEEEchhhc-CCHHHHHHH
Confidence 87 99999876553 355444444
No 153
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=98.16 E-value=7.9e-06 Score=72.39 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 245 STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
.++...++...++.++.+|+-+||+|++|+.++..+|+++|-||+++|. .|+-.+++.++
T Consensus 190 dl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr-~~d~~~~Li~G 249 (258)
T 4a29_A 190 NKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMR-NPEKIKELIEG 249 (258)
T ss_dssp CHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHH-CTTHHHHHHC-
T ss_pred CHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhC-CCcHHHHHHcC
Confidence 4677788888888789999999999999999999999999999999996 48877776554
No 154
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=98.16 E-value=2.6e-05 Score=74.07 Aligned_cols=136 Identities=12% Similarity=0.023 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.+ +++.+.++++| +++...+++++||++. + .++||.++....++.++..++++
T Consensus 152 ~e~~~~~a~~~~~~G~~~iKiKvG~----------~~~~d~~~v~avR~a~---g--~d~~l~vDan~~~~~~~A~~~~~ 216 (389)
T 3ozy_A 152 PDQAADELAGWVEQGFTAAKLKVGR----------APRKDAANLRAMRQRV---G--ADVEILVDANQSLGRHDALAMLR 216 (389)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCS----------CHHHHHHHHHHHHHHH---C--TTSEEEEECTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEeeccCC----------CHHHHHHHHHHHHHHc---C--CCceEEEECCCCcCHHHHHHHHH
Confidence 4455555555433 69999999886 2344567788888774 4 57899999999999989999999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHH-HHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMY-KLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~-~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
.+ .+.|+++|- .| ..+..++..++++ +.++ +||++.+.+.+++++.++++
T Consensus 217 ~l--~~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~~--iPIa~dE~i~~~~~~~~~i~ 267 (389)
T 3ozy_A 217 IL--DEAGCYWFE-------EP------------------LSIDDIEGHRILRAQGTP--VRIATGENLYTRNAFNDYIR 267 (389)
T ss_dssp HH--HHTTCSEEE-------SC------------------SCTTCHHHHHHHHTTCCS--SEEEECTTCCHHHHHHHHHH
T ss_pred HH--HhcCCCEEE-------CC------------------CCcccHHHHHHHHhcCCC--CCEEeCCCCCCHHHHHHHHH
Confidence 99 899988883 11 1112356677888 7776 99999999999999999999
Q ss_pred hc-cCeeeehhHHhhcCchHHHHH
Q psy5880 280 AG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 280 ~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
.| +|.|++--... .|..-..++
T Consensus 268 ~~~~d~v~ik~~~~-GGit~~~~i 290 (389)
T 3ozy_A 268 NDAIDVLQADASRA-GGITEALAI 290 (389)
T ss_dssp TTCCSEECCCTTTS-SCHHHHHHH
T ss_pred cCCCCEEEeCcccc-CCHHHHHHH
Confidence 77 99999876653 344444444
No 155
>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}
Probab=98.15 E-value=2.6e-05 Score=74.45 Aligned_cols=134 Identities=6% Similarity=-0.039 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhcc-cccEEEEcc------CC----CCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNV------SS----PNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD 189 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~------sc----Pn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~ 189 (328)
..++|++.++++.+ +++.+.+++ ++ |.+ |.....+.+...+++++||++. + .+++|.++....
T Consensus 152 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~-~~~~~~~~~~~~e~v~avR~a~---G--~d~~l~vDan~~ 225 (407)
T 2o56_A 152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLN-GPLTDKILRLGYDRMAAIRDAV---G--PDVDIIAEMHAF 225 (407)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSCSCCC-SSCCHHHHHHHHHHHHHHHHHH---C--TTSEEEEECTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcccccCCcCccccCccc-CCCchhHHHHHHHHHHHHHHhc---C--CCCEEEEECCCC
Confidence 46677777777654 799999986 32 111 1001123456677788887763 4 579999999888
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.++..++++.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.
T Consensus 226 ~~~~~a~~~~~~l--~~~~i~~iE-------~P------------------~~~~~~~~~~~l~~~~~--iPIa~dE~~~ 276 (407)
T 2o56_A 226 TDTTSAIQFGRMI--EELGIFYYE-------EP------------------VMPLNPAQMKQVADKVN--IPLAAGERIY 276 (407)
T ss_dssp SCHHHHHHHHHHH--GGGCCSCEE-------CS------------------SCSSSHHHHHHHHHHCC--SCEEECTTCC
T ss_pred CCHHHHHHHHHHH--HhcCCCEEe-------CC------------------CChhhHHHHHHHHHhCC--CCEEeCCCcC
Confidence 9988999999999 888888762 11 11123567788888887 9999999999
Q ss_pred CHHHHHHHHHhc-cCeeeehh
Q psy5880 270 SGKDAFEKIKAG-ASLVQIYT 289 (328)
Q Consensus 270 s~~da~~~l~~G-Ad~V~vg~ 289 (328)
+++++.++++.| +|+|++=-
T Consensus 277 ~~~~~~~~i~~~~~d~v~ik~ 297 (407)
T 2o56_A 277 WRWGYRPFLENGSLSVIQPDI 297 (407)
T ss_dssp HHHHHHHHHHTTCCSEECCCT
T ss_pred CHHHHHHHHHcCCCCEEecCc
Confidence 999999999988 89998743
No 156
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}
Probab=98.15 E-value=2.4e-05 Score=74.54 Aligned_cols=136 Identities=12% Similarity=0.011 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcc-cccEEEEcc------CCC----CCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNV------SSP----NTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD 189 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~------scP----n~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~ 189 (328)
..++|++.++++.+ +++.+.+++ +++ .+ |.....+.+...+++++||++. + .+++|.++....
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~-g~~~~~~~~~~~e~v~avr~av---G--~d~~l~vDan~~ 219 (403)
T 2ox4_A 146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLE-GPLPSETIKIGVERVEAIRNAV---G--PDVDIIVENHGH 219 (403)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCS-SSCCHHHHHHHHHHHHHHHHHH---C--TTSEEEEECTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCccccccCccc-CCCchHHHHHHHHHHHHHHHHh---C--CCCeEEEECCCC
Confidence 45677777776654 799999986 331 11 1111123456677788877763 4 579999999988
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.++..++++.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.
T Consensus 220 ~~~~~ai~~~~~l--~~~~i~~iE-------~P------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~ 270 (403)
T 2ox4_A 220 TDLVSAIQFAKAI--EEFNIFFYE-------EI------------------NTPLNPRLLKEAKKKID--IPLASGERIY 270 (403)
T ss_dssp SCHHHHHHHHHHH--GGGCEEEEE-------CC------------------SCTTSTHHHHHHHHTCC--SCEEECTTCC
T ss_pred CCHHHHHHHHHHH--HhhCCCEEe-------CC------------------CChhhHHHHHHHHHhCC--CCEEecCCcC
Confidence 9988899999999 888887662 01 11122466788888887 9999999999
Q ss_pred CHHHHHHHHHhc-cCeeeehhHH
Q psy5880 270 SGKDAFEKIKAG-ASLVQIYTSF 291 (328)
Q Consensus 270 s~~da~~~l~~G-Ad~V~vg~a~ 291 (328)
+.+++.++++.| +|+|++--.-
T Consensus 271 ~~~~~~~~i~~~~~d~v~ik~~~ 293 (403)
T 2ox4_A 271 SRWGFLPFLEDRSIDVIQPDLGT 293 (403)
T ss_dssp HHHHHHHHHHTTCCSEECCCHHH
T ss_pred CHHHHHHHHHcCCCCEEecCccc
Confidence 999999999987 8999875443
No 157
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=98.14 E-value=1.4e-05 Score=76.90 Aligned_cols=144 Identities=13% Similarity=0.064 Sum_probs=99.3
Q ss_pred HHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCC
Q psy5880 129 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCK 208 (328)
Q Consensus 129 a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G 208 (328)
++.++ +|+|-++.++-. .+.+.++++..++ .+..++|=+.. ..++.+ + .++|
T Consensus 126 a~~~G--AD~ILLi~a~l~---------~~~l~~l~~~a~~--------lgm~~LvEvh~------~eE~~~-A--~~lg 177 (452)
T 1pii_A 126 ARYYQ--ADACLLMLSVLD---------DDQYRQLAAVAHS--------LEMGVLTEVSN------EEEQER-A--IALG 177 (452)
T ss_dssp HHHTT--CSEEEEETTTCC---------HHHHHHHHHHHHH--------TTCEEEEEECS------HHHHHH-H--HHTT
T ss_pred HHHcC--CCEEEEEcccCC---------HHHHHHHHHHHHH--------cCCeEEEEeCC------HHHHHH-H--HHCC
Confidence 66666 999999888411 2346666666554 36777877643 345434 4 4789
Q ss_pred ccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 209 VDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 209 ~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
++.|-+.|+.... + ...++...++.+.++.++++|+-|||+|++|+.++..+ |++|.||
T Consensus 178 a~iIGinnr~L~t--------------~------~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVG 236 (452)
T 1pii_A 178 AKVVGINNRDLRD--------------L------SIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHF-ANGFLIG 236 (452)
T ss_dssp CSEEEEESEETTT--------------T------EECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CSEEEEC
T ss_pred CCEEEEeCCCCCC--------------C------CCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CCEEEEc
Confidence 9998887764320 0 11246667777777667999999999999999999999 9999999
Q ss_pred hHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHHh
Q psy5880 289 TSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAV 322 (328)
Q Consensus 289 ~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~~ 322 (328)
+++|. -++.-..+.+-+....+=+|+++.+|..
T Consensus 237 ealmr-~~d~~~~~~~l~~~~~KICGit~~eda~ 269 (452)
T 1pii_A 237 SALMA-HDDLHAAVRRVLLGENKVCGLTRGQDAK 269 (452)
T ss_dssp HHHHT-CSCHHHHHHHHHHCSCEECCCCSHHHHH
T ss_pred HHHcC-CcCHHHHHHHHHHHhccccCCCcHHHHH
Confidence 99984 3555444443333334456888888875
No 158
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}
Probab=98.14 E-value=7.4e-05 Score=71.05 Aligned_cols=126 Identities=12% Similarity=0.061 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.. +++.+.++++. +.+...+++++||++. + .++||.++....++.++..++++
T Consensus 146 ~e~~~~~a~~~~~~Gf~~vKik~g~----------~~~~~~e~v~avR~a~---g--~d~~l~vDan~~~~~~~a~~~~~ 210 (397)
T 2qde_A 146 PEAVAEEALAVLREGFHFVKLKAGG----------PLKADIAMVAEVRRAV---G--DDVDLFIDINGAWTYDQALTTIR 210 (397)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEECCS----------CHHHHHHHHHHHHHHH---C--TTSCEEEECTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhheeecccC----------CHHHHHHHHHHHHHhh---C--CCCEEEEECCCCCCHHHHHHHHH
Confidence 4666666666654 69999998772 2345667888888774 3 57999999988899888899999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.+.+++.++++.
T Consensus 211 ~l--~~~~i~~iE-------qP------------------~~~~~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~~ 261 (397)
T 2qde_A 211 AL--EKYNLSKIE-------QP------------------LPAWDLDGMARLRGKVA--TPIYADESAQELHDLLAIINK 261 (397)
T ss_dssp HH--GGGCCSCEE-------CC------------------SCTTCHHHHHHHHTTCS--SCEEESTTCCSHHHHHHHHHH
T ss_pred HH--HhCCCCEEE-------CC------------------CChhhHHHHHHHHhhCC--CCEEEeCCcCCHHHHHHHHHc
Confidence 99 888888762 11 11223566788888876 999999999999999999998
Q ss_pred c-cCeeeehhHH
Q psy5880 281 G-ASLVQIYTSF 291 (328)
Q Consensus 281 G-Ad~V~vg~a~ 291 (328)
| +|.|++=-.-
T Consensus 262 ~~~d~v~ik~~~ 273 (397)
T 2qde_A 262 GAADGLMIKTQK 273 (397)
T ss_dssp TCCSEEEECHHH
T ss_pred CCCCEEEEeccc
Confidence 7 9999986544
No 159
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=98.14 E-value=1.5e-05 Score=69.50 Aligned_cols=125 Identities=11% Similarity=0.089 Sum_probs=77.6
Q ss_pred HHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe-CCCCChhhHHHHHHHh
Q psy5880 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI-APDLSLDEKKDIADVV 202 (328)
Q Consensus 124 ~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl-~~~~~~~~~~~~a~~l 202 (328)
.+++.+.+++ +|++.+|...+ .+.+.++++.+++. +++.++.+ .+ .|.+ ++ ..+
T Consensus 74 ~~~~~~~~aG--ad~i~vh~~~~----------~~~~~~~~~~~~~~--------g~~~~~d~l~~-~T~~---~~-~~~ 128 (218)
T 3jr2_A 74 ILSRMAFEAG--ADWITVSAAAH----------IATIAACKKVADEL--------NGEIQIEIYGN-WTMQ---DA-KAW 128 (218)
T ss_dssp HHHHHHHHHT--CSEEEEETTSC----------HHHHHHHHHHHHHH--------TCEEEEECCSS-CCHH---HH-HHH
T ss_pred HHHHHHHhcC--CCEEEEecCCC----------HHHHHHHHHHHHHh--------CCccceeeeec-CCHH---HH-HHH
Confidence 3667777777 99999876531 12245666666553 45555533 33 3432 32 334
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhcc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGA 282 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GA 282 (328)
.+.|+|++.++-+... +..|....+..++.+++++. . ++|+++.||| +++.+.+++++||
T Consensus 129 --~~~g~d~v~~~~~~~~--------------~~~g~~~~~~~l~~i~~~~~-~--~~pi~v~GGI-~~~~~~~~~~aGA 188 (218)
T 3jr2_A 129 --VDLGITQAIYHRSRDA--------------ELAGIGWTTDDLDKMRQLSA-L--GIELSITGGI-VPEDIYLFEGIKT 188 (218)
T ss_dssp --HHTTCCEEEEECCHHH--------------HHHTCCSCHHHHHHHHHHHH-T--TCEEEEESSC-CGGGGGGGTTSCE
T ss_pred --HHcCccceeeeecccc--------------ccCCCcCCHHHHHHHHHHhC-C--CCCEEEECCC-CHHHHHHHHHcCC
Confidence 4669998866422110 01111112344555555543 2 4999999999 5999999999999
Q ss_pred CeeeehhHHhh
Q psy5880 283 SLVQIYTSFVY 293 (328)
Q Consensus 283 d~V~vg~a~l~ 293 (328)
|.|.+||++..
T Consensus 189 d~vvvGsaI~~ 199 (218)
T 3jr2_A 189 KTFIAGRALAG 199 (218)
T ss_dssp EEEEESGGGSH
T ss_pred CEEEEchhhcC
Confidence 99999999863
No 160
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1
Probab=98.14 E-value=7.4e-05 Score=65.76 Aligned_cols=117 Identities=19% Similarity=0.157 Sum_probs=75.7
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe---CCCCChhhHHHHHHHhccccCCccE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI---APDLSLDEKKDIADVVLDSKCKVDG 211 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl---~~~~~~~~~~~~a~~l~~~~~G~d~ 211 (328)
++|.|++.++ . +. ..+ .+.+-+.+|++++.. .+.|+ |+ +..++.+++...++.+ .++|+|+
T Consensus 101 GAdEID~vin---i-g~-~~~---~v~~ei~~v~~a~~~----~g~~l--KvIlEt~~L~~e~i~~a~ria--~eaGADf 164 (234)
T 1n7k_A 101 GATELDVVPH---L-SL-GPE---AVYREVSGIVKLAKS----YGAVV--KVILEAPLWDDKTLSLLVDSS--RRAGADI 164 (234)
T ss_dssp TCCEEEECCC---G-GG-CHH---HHHHHHHHHHHHHHH----TTCEE--EEECCGGGSCHHHHHHHHHHH--HHTTCSE
T ss_pred CCCEEEEecc---c-hH-HHH---HHHHHHHHHHHHHhh----cCCeE--EEEEeccCCCHHHHHHHHHHH--HHhCCCE
Confidence 4898886443 1 11 111 344445555555432 34565 43 2336777888899998 9999999
Q ss_pred EEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHH--HHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehh
Q psy5880 212 LIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISE--MYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 212 i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~--i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~ 289 (328)
|-.+.+ +. +..| ..++.++. +++.+. +||.++|||++.+|+.+++++||+-++..+
T Consensus 165 VKTsTG-~~--------------~~~g-----At~~dv~l~~m~~~v~--v~VKaaGGirt~~~al~~i~aGa~RiG~S~ 222 (234)
T 1n7k_A 165 VKTSTG-VY--------------TKGG-----DPVTVFRLASLAKPLG--MGVKASGGIRSGIDAVLAVGAGADIIGTSS 222 (234)
T ss_dssp EESCCS-SS--------------CCCC-----SHHHHHHHHHHHGGGT--CEEEEESSCCSHHHHHHHHHTTCSEEEETT
T ss_pred EEeCCC-CC--------------CCCC-----CCHHHHHHHHHHHHHC--CCEEEecCCCCHHHHHHHHHcCccccchHH
Confidence 953321 11 0011 23455666 888886 999999999999999999999999555443
No 161
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=98.14 E-value=1.1e-05 Score=72.12 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=78.0
Q ss_pred HHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhcccc
Q psy5880 127 KGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSK 206 (328)
Q Consensus 127 ~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~ 206 (328)
..+..++ +|++-+...+ +. +.+.++++..++. ++-+.|-+. + ..++. .+ .+
T Consensus 122 ~~a~~~G--AD~VlL~~~~--------l~--~~l~~l~~~a~~l--------Gl~~lvev~---~---~~E~~-~a--~~ 172 (254)
T 1vc4_A 122 EEARAFG--ASAALLIVAL--------LG--ELTGAYLEEARRL--------GLEALVEVH---T---ERELE-IA--LE 172 (254)
T ss_dssp HHHHHTT--CSEEEEEHHH--------HG--GGHHHHHHHHHHH--------TCEEEEEEC---S---HHHHH-HH--HH
T ss_pred HHHHHcC--CCEEEECccc--------hH--HHHHHHHHHHHHC--------CCeEEEEEC---C---HHHHH-HH--HH
Confidence 3355556 9999865441 11 3456666554442 344444443 2 23433 44 57
Q ss_pred CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC---CccEEEecCCCCHHHHHHHHHhccC
Q psy5880 207 CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG---KLPIIGVGGVFSGKDAFEKIKAGAS 283 (328)
Q Consensus 207 ~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~---~ipvia~GGI~s~~da~~~l~~GAd 283 (328)
+|++.|-+.|+.... + +. .++...++.+.++. ++|+|+.|||+|++|+.+++. ||+
T Consensus 173 ~gad~IGvn~~~l~~--------------~-~~-----dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~ 231 (254)
T 1vc4_A 173 AGAEVLGINNRDLAT--------------L-HI-----NLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFD 231 (254)
T ss_dssp HTCSEEEEESBCTTT--------------C-CB-----CTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCS
T ss_pred cCCCEEEEccccCcC--------------C-CC-----CHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCC
Confidence 889999887754320 0 11 12344555555532 489999999999999999999 999
Q ss_pred eeeehhHHhhcCchHHHHH
Q psy5880 284 LVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 284 ~V~vg~a~l~~gp~~~~~i 302 (328)
+|.||++++ +.++.-..+
T Consensus 232 gvlVGsAl~-~~~d~~~~~ 249 (254)
T 1vc4_A 232 AVLIGTSLM-RAPDLEAAL 249 (254)
T ss_dssp EEEECHHHH-TSSCHHHHH
T ss_pred EEEEeHHHc-CCCCHHHHH
Confidence 999999998 446554443
No 162
>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A
Probab=98.14 E-value=2.3e-05 Score=74.23 Aligned_cols=124 Identities=8% Similarity=0.004 Sum_probs=96.2
Q ss_pred HHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+++++.++++.. +++.+.++++++ +.+...+++++||++. + .+++|.++....++.++..++++.
T Consensus 141 e~~~~~a~~~~~~Gf~~vKik~g~~---------~~~~d~e~v~avR~a~---G--~d~~l~vDan~~~~~~~a~~~~~~ 206 (382)
T 2gdq_A 141 SRSVSNVEAQLKKGFEQIKVKIGGT---------SFKEDVRHINALQHTA---G--SSITMILDANQSYDAAAAFKWERY 206 (382)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSSS---------CHHHHHHHHHHHHHHH---C--TTSEEEEECTTCCCHHHHHTTHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCC---------CHHHHHHHHHHHHHhh---C--CCCEEEEECCCCCCHHHHHHHHHH
Confidence 677777777665 799999988752 2345677888888774 3 579999999988998888899999
Q ss_pred hccccC-CccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 202 VLDSKC-KVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 202 l~~~~~-G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
+ .+. |+++|- .| + .+..++..+++++.++ +||++.+.+.+++++.++++.
T Consensus 207 l--~~~~~i~~iE-------qP-------------~-----~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~~ 257 (382)
T 2gdq_A 207 F--SEWTNIGWLE-------EP-------------L-----PFDQPQDYAMLRSRLS--VPVAGGENMKGPAQYVPLLSQ 257 (382)
T ss_dssp H--TTCSCEEEEE-------CC-------------S-----CSSCHHHHHHHHTTCS--SCEEECTTCCSHHHHHHHHHT
T ss_pred H--hhccCCeEEE-------CC-------------C-----CcccHHHHHHHHhhCC--CCEEecCCcCCHHHHHHHHHc
Confidence 9 888 877662 11 1 1123566778888876 999999999999999999998
Q ss_pred c-cCeeeehh
Q psy5880 281 G-ASLVQIYT 289 (328)
Q Consensus 281 G-Ad~V~vg~ 289 (328)
| +|+|++=-
T Consensus 258 ~~~d~v~ik~ 267 (382)
T 2gdq_A 258 RCLDIIQPDV 267 (382)
T ss_dssp TCCSEECCCT
T ss_pred CCCCEEecCc
Confidence 7 99998743
No 163
>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A
Probab=98.13 E-value=8.7e-05 Score=69.72 Aligned_cols=146 Identities=11% Similarity=0.107 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.. +++.+.++++++. .+...+.+++||++. + .+++|.++....++.++..++++
T Consensus 141 ~~~~~~~a~~~~~~Gf~~iKik~g~~~---------~~~d~~~v~avr~a~---g--~~~~l~vDan~~~~~~~a~~~~~ 206 (366)
T 1tkk_A 141 PEEMAADAENYLKQGFQTLKIKVGKDD---------IATDIARIQEIRKRV---G--SAVKLRLDANQGWRPKEAVTAIR 206 (366)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCSSC---------HHHHHHHHHHHHHHH---C--SSSEEEEECTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeCCCC---------HHHHHHHHHHHHHHh---C--CCCeEEEECCCCCCHHHHHHHHH
Confidence 4556666665544 6999999988632 345567788888773 3 57899999988899888899999
Q ss_pred Hhcccc--CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 201 VVLDSK--CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 201 ~l~~~~--~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
.+ .+ .|+++|- .| ..+..++..+++++.++ +||++.+.+++.+++.+++
T Consensus 207 ~l--~~~~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~i 257 (366)
T 1tkk_A 207 KM--EDAGLGIELVE-------QP------------------VHKDDLAGLKKVTDATD--TPIMADESVFTPRQAFEVL 257 (366)
T ss_dssp HH--HHTTCCEEEEE-------CC------------------SCTTCHHHHHHHHHHCS--SCEEECTTCCSHHHHHHHH
T ss_pred HH--hhcCCCceEEE-------CC------------------CCcccHHHHHHHHhhCC--CCEEEcCCCCCHHHHHHHH
Confidence 99 88 7777662 11 11223566788888887 9999999999999999999
Q ss_pred Hhc-cCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 279 KAG-ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 279 ~~G-Ad~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
+.| +|.|++--.-. .|..-..++. .+.+.+|+
T Consensus 258 ~~~~~d~v~ik~~~~-GGit~~~~i~----~~A~~~g~ 290 (366)
T 1tkk_A 258 QTRSADLINIKLMKA-GGISGAEKIN----AMAEACGV 290 (366)
T ss_dssp HHTCCSEEEECHHHH-TSHHHHHHHH----HHHHHHTC
T ss_pred HhCCCCEEEeehhhh-cCHHHHHHHH----HHHHHcCC
Confidence 977 99999876654 3554444443 33445554
No 164
>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Probab=98.13 E-value=2.1e-05 Score=74.72 Aligned_cols=134 Identities=10% Similarity=0.017 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCC---cchhh------hhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNT---ANLRK------LQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL 190 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~---~g~~~------~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~ 190 (328)
..++|++.++++.+ +++.+.+++.|+.. .+ +. ..+.+...+++++||++. + .+++|.++....+
T Consensus 137 ~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~~~-~~~~gg~~~~~~~~~~e~v~avr~a~---G--~d~~l~vD~n~~~ 210 (392)
T 2poz_A 137 TPDEFARAVERPLKEGYGALKFYPLAQRVGSALQ-HVTRRSMSAEAIELAYRRVKAVRDAA---G--PEIELMVDLSGGL 210 (392)
T ss_dssp SHHHHHHHTHHHHHTTCSEEEECCCCEEETTEEE-CCBTTBCCHHHHHHHHHHHHHHHHHH---C--TTSEEEEECTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccccccccc-ccccCCcchhhHHHHHHHHHHHHHhc---C--CCCEEEEECCCCC
Confidence 45667777766654 79999999875211 01 11 123456677888887763 4 5799999999889
Q ss_pred ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCC
Q psy5880 191 SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFS 270 (328)
Q Consensus 191 ~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s 270 (328)
+.++..++++.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.+
T Consensus 211 ~~~~a~~~~~~l--~~~~i~~iE-------~P------------------~~~~~~~~~~~l~~~~~--ipIa~dE~~~~ 261 (392)
T 2poz_A 211 TTDETIRFCRKI--GELDICFVE-------EP------------------CDPFDNGALKVISEQIP--LPIAVGERVYT 261 (392)
T ss_dssp CHHHHHHHHHHH--GGGCEEEEE-------CC------------------SCTTCHHHHHHHHHHCS--SCEEECTTCCH
T ss_pred CHHHHHHHHHHH--HhcCCCEEE-------CC------------------CCcccHHHHHHHHhhCC--CCEEecCCcCC
Confidence 988899999999 888887662 01 11223566788888887 99999999999
Q ss_pred HHHHHHHHHhc-cCeeeehh
Q psy5880 271 GKDAFEKIKAG-ASLVQIYT 289 (328)
Q Consensus 271 ~~da~~~l~~G-Ad~V~vg~ 289 (328)
++++.++++.| +|+|++=-
T Consensus 262 ~~~~~~~i~~~~~d~v~ik~ 281 (392)
T 2poz_A 262 RFGFRKIFELQACGIIQPDI 281 (392)
T ss_dssp HHHHHHHHTTTCCSEECCCT
T ss_pred HHHHHHHHHcCCCCEEecCc
Confidence 99999999987 89998743
No 165
>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*
Probab=98.12 E-value=7.1e-05 Score=71.21 Aligned_cols=128 Identities=13% Similarity=0.030 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..++|++.++++.+ +++.+.++++.+ +.+...+++++||++. + .+++|.++....++.++..+++
T Consensus 175 ~~e~~~~~a~~~~~~Gf~~vKik~g~~---------~~~~d~e~v~avR~av---G--~d~~l~vDan~~~~~~~ai~~~ 240 (398)
T 2pp0_A 175 PLDQVLKNVVISRENGIGGIKLKVGQP---------NCAEDIRRLTAVREAL---G--DEFPLMVDANQQWDRETAIRMG 240 (398)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS---------CHHHHHHHHHHHHHHH---C--SSSCEEEECTTCSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecCCC---------CHHHHHHHHHHHHHHc---C--CCCeEEEECCCCCCHHHHHHHH
Confidence 45667777776654 799999987742 2345677888888774 3 5799999999889988899999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.+++++.++++
T Consensus 241 ~~l--~~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~ 291 (398)
T 2pp0_A 241 RKM--EQFNLIWIE-------EP------------------LDAYDIEGHAQLAAALD--TPIATGEMLTSFREHEQLIL 291 (398)
T ss_dssp HHH--GGGTCSCEE-------CC------------------SCTTCHHHHHHHHHHCS--SCEEECTTCCSHHHHHHHHH
T ss_pred HHH--HHcCCceee-------CC------------------CChhhHHHHHHHHhhCC--CCEEecCCcCCHHHHHHHHH
Confidence 999 888888762 11 11123566788888887 99999999999999999999
Q ss_pred hc-cCeeeehhHH
Q psy5880 280 AG-ASLVQIYTSF 291 (328)
Q Consensus 280 ~G-Ad~V~vg~a~ 291 (328)
.| +|+|++=-.-
T Consensus 292 ~~~~d~v~ik~~~ 304 (398)
T 2pp0_A 292 GNASDFVQPDAPR 304 (398)
T ss_dssp TTCCSEECCCHHH
T ss_pred cCCCCEEEeCccc
Confidence 88 9999876444
No 166
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=98.12 E-value=1.8e-05 Score=72.74 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=61.4
Q ss_pred HhHHHHHHHhhcCc-cc---eEEeccCCCCCcCccCCC-chHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCccccccc
Q psy5880 42 LQFWLLGILKFGDV-AH---YFVVNVSSPNTANLRKLQ-AKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKK 116 (328)
Q Consensus 42 l~~y~~~~~~l~~~-~~---~v~~n~sspN~~gl~~~~-~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~ 116 (328)
.++|.+.++.+... +| ++++|.+|||+.|.+.++ +++.+.++++++++.. ..|+++|+.++++
T Consensus 105 ~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~-------~~Pv~vK~~~~~~----- 172 (314)
T 2e6f_A 105 VEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAY-------GLPFGVKMPPYFD----- 172 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHH-------CSCEEEEECCCCC-----
T ss_pred HHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhc-------CCCEEEEECCCCC-----
Confidence 35788888877655 48 999999999998877776 7788888888888764 2699999988752
Q ss_pred chhHHHHHHHHHHHHhccc-ccEEEE
Q psy5880 117 DIADVVLDSVKGILKFGDV-AHYFVV 141 (328)
Q Consensus 117 ~~~~~i~~~~~~a~~~~~~-~d~iei 141 (328)
.+.+.++++.+..+ + +|+|.+
T Consensus 173 --~~~~~~~a~~~~~a--G~~d~i~v 194 (314)
T 2e6f_A 173 --IAHFDTAAAVLNEF--PLVKFVTC 194 (314)
T ss_dssp --HHHHHHHHHHHHTC--TTEEEEEE
T ss_pred --HHHHHHHHHHHHhc--CCceEEEE
Confidence 23444455444433 6 788875
No 167
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=98.12 E-value=3.4e-05 Score=73.71 Aligned_cols=135 Identities=11% Similarity=0.020 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhcc-cccEEEEcc------CC----CCCc---chhh-hhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEE
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNV------SS----PNTA---NLRK-LQAKDQLKHLLKTVVETRNQLAVKPLPPILVK 185 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~------sc----Pn~~---g~~~-~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vK 185 (328)
..++|++.++++.+ +++.+.+++ ++ |.++ |... ..+.+...+++++||++. + .+++|.++
T Consensus 150 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~---G--~d~~l~vD 224 (410)
T 2gl5_A 150 TPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAM---G--DDADIIVE 224 (410)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHH---C--SSSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhc---C--CCCEEEEE
Confidence 46677777777654 799999986 32 1111 0000 013355677788877763 4 57999999
Q ss_pred eCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEe
Q psy5880 186 IAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGV 265 (328)
Q Consensus 186 l~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~ 265 (328)
....++.++..++++.+ .+.|+++|- .| ..+..++..+++++.++ +||++.
T Consensus 225 an~~~~~~~ai~~~~~l--~~~~i~~iE-------~P------------------~~~~~~~~~~~l~~~~~--iPIa~d 275 (410)
T 2gl5_A 225 IHSLLGTNSAIQFAKAI--EKYRIFLYE-------EP------------------IHPLNSDNMQKVSRSTT--IPIATG 275 (410)
T ss_dssp CTTCSCHHHHHHHHHHH--GGGCEEEEE-------CS------------------SCSSCHHHHHHHHHHCS--SCEEEC
T ss_pred CCCCCCHHHHHHHHHHH--HhcCCCeEE-------CC------------------CChhhHHHHHHHHhhCC--CCEEec
Confidence 99889988999999999 888887662 01 11123567788888887 999999
Q ss_pred cCCCCHHHHHHHHHhc-cCeeeehh
Q psy5880 266 GGVFSGKDAFEKIKAG-ASLVQIYT 289 (328)
Q Consensus 266 GGI~s~~da~~~l~~G-Ad~V~vg~ 289 (328)
+.+.+.+++.++++.| +|+|++=-
T Consensus 276 E~~~~~~~~~~~i~~~~~d~v~ik~ 300 (410)
T 2gl5_A 276 ERSYTRWGYRELLEKQSIAVAQPDL 300 (410)
T ss_dssp TTCCTTHHHHHHHHTTCCSEECCCT
T ss_pred CCcCCHHHHHHHHHcCCCCEEecCc
Confidence 9999999999999987 89998743
No 168
>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}
Probab=98.12 E-value=2.5e-05 Score=73.74 Aligned_cols=128 Identities=14% Similarity=0.062 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCC-hhhHHHHHH
Q psy5880 123 LDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLS-LDEKKDIAD 200 (328)
Q Consensus 123 ~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~-~~~~~~~a~ 200 (328)
+++++.++++.+ +++.+.++++++.. +++...+.+++||++. + .+++|+++....++ .++..++++
T Consensus 148 e~~~~~a~~~~~~Gf~~iKlk~g~~g~-------~~~~d~~~v~avR~a~---g--~~~~l~vDan~~~~d~~~A~~~~~ 215 (374)
T 3sjn_A 148 EDNVAIVQGLKDQGFSSIKFGGGVMGD-------DPDTDYAIVKAVREAA---G--PEMEVQIDLASKWHTCGHSAMMAK 215 (374)
T ss_dssp GGGHHHHHHHHTTTCSEEEEECTTTTS-------CHHHHHHHHHHHHHHH---C--SSSEEEEECTTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEeccCCCCC-------CHHHHHHHHHHHHHHh---C--CCCeEEEECCCCCCCHHHHHHHHH
Confidence 555555555544 69999999987521 2455667778887763 4 68899999999999 888899999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.+..++.++++.
T Consensus 216 ~l--~~~~i~~iE-------qP------------------~~~~~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~l~~ 266 (374)
T 3sjn_A 216 RL--EEFNLNWIE-------EP------------------VLADSLISYEKLSRQVS--QKIAGGESLTTRYEFQEFITK 266 (374)
T ss_dssp HS--GGGCCSEEE-------CS------------------SCTTCHHHHHHHHHHCS--SEEEECTTCCHHHHHHHHHHH
T ss_pred Hh--hhcCceEEE-------CC------------------CCcccHHHHHHHHhhCC--CCEEeCCCcCCHHHHHHHHHc
Confidence 99 889988873 11 11123566788888887 999999999999999999987
Q ss_pred c-cCeeeehhHH
Q psy5880 281 G-ASLVQIYTSF 291 (328)
Q Consensus 281 G-Ad~V~vg~a~ 291 (328)
| +|.|++--..
T Consensus 267 ~~~d~v~~k~~~ 278 (374)
T 3sjn_A 267 SNADIVQPDITR 278 (374)
T ss_dssp HCCSEECCBTTT
T ss_pred CCCCEEEeCccc
Confidence 6 8999876543
No 169
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=98.12 E-value=4.4e-06 Score=73.04 Aligned_cols=105 Identities=15% Similarity=0.279 Sum_probs=67.4
Q ss_pred EEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCcc
Q psy5880 182 ILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLP 261 (328)
Q Consensus 182 v~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ip 261 (328)
+++.+++. +. .+ +..+ .+.|+|++.++..+.... ..+. + .+..++.++++++.++ ++|
T Consensus 117 ~~~~~s~~-t~---~e-~~~a--~~~g~d~v~~~~v~~t~~----------~~~~-~---~~~~~~~l~~~~~~~~-~~p 174 (227)
T 2tps_A 117 MILGVSAH-TM---SE-VKQA--EEDGADYVGLGPIYPTET----------KKDT-R---AVQGVSLIEAVRRQGI-SIP 174 (227)
T ss_dssp SEEEEEEC-SH---HH-HHHH--HHHTCSEEEECCSSCCCS----------SSSC-C---CCCTTHHHHHHHHTTC-CCC
T ss_pred cEEEEecC-CH---HH-HHHH--HhCCCCEEEECCCcCCCC----------CCCC-C---CccCHHHHHHHHHhCC-CCC
Confidence 55666543 32 23 3445 678999998743211100 0110 1 1223567778877664 499
Q ss_pred EEEecCCCCHHHHHHHHHhccCeeeehhHHhhc-Cc-hHHHHHHHHHHHH
Q psy5880 262 IIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH-GP-PLVTRIKSELEEL 309 (328)
Q Consensus 262 via~GGI~s~~da~~~l~~GAd~V~vg~a~l~~-gp-~~~~~i~~~l~~~ 309 (328)
|++.|||+ ++++.+++++||++|.+||+++.. +| ..++++.+.++.|
T Consensus 175 via~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~~ 223 (227)
T 2tps_A 175 IVGIGGIT-IDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTY 223 (227)
T ss_dssp EEEESSCC-TTTSHHHHHTTCSEEEESHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCC-HHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHhc
Confidence 99999999 999999999999999999999742 44 4555655555444
No 170
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=98.11 E-value=8.1e-06 Score=70.59 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=54.6
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCe
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASL 284 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~ 284 (328)
.+.|+|+|.+.+.... ++-.| ..+..++.++++++..+ +||++.|||+ ++++.+++++||++
T Consensus 125 ~~~g~d~i~~~~~~~~-------------~~~~~--~~~~~~~~l~~l~~~~~--~pvia~GGI~-~~nv~~~~~~Ga~g 186 (215)
T 1xi3_A 125 EKKGADYLGAGSVFPT-------------KTKED--ARVIGLEGLRKIVESVK--IPVVAIGGIN-KDNAREVLKTGVDG 186 (215)
T ss_dssp HHHTCSEEEEECSSCC-----------------C--CCCCHHHHHHHHHHHCS--SCEEEESSCC-TTTHHHHHTTTCSE
T ss_pred HhcCCCEEEEcCCccC-------------CCCCC--CCCcCHHHHHHHHHhCC--CCEEEECCcC-HHHHHHHHHcCCCE
Confidence 5789999987653211 00001 12345677888888775 9999999999 99999999999999
Q ss_pred eeehhHHhhcCch
Q psy5880 285 VQIYTSFVYHGPP 297 (328)
Q Consensus 285 V~vg~a~l~~gp~ 297 (328)
|.+||+++. .++
T Consensus 187 v~vgs~i~~-~~d 198 (215)
T 1xi3_A 187 IAVISAVMG-AED 198 (215)
T ss_dssp EEESHHHHT-SSS
T ss_pred EEEhHHHhC-CCC
Confidence 999999974 344
No 171
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}
Probab=98.11 E-value=5.7e-05 Score=71.63 Aligned_cols=124 Identities=7% Similarity=-0.061 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..+++++.++++.. +++.+.++++++. .+...+++++||++ ++ .+++|.++....++.++..+++
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~vKik~g~~~---------~~~~~e~v~avR~a---~G--~~~~l~vDan~~~~~~~a~~~~ 210 (389)
T 2oz8_A 145 DDDAFVSLFSHAASIGYSAFKIKVGHRD---------FDRDLRRLELLKTC---VP--AGSKVMIDPNEAWTSKEALTKL 210 (389)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCSS---------HHHHHHHHHHHHTT---SC--TTCEEEEECTTCBCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccCCCC---------HHHHHHHHHHHHHh---hC--CCCeEEEECCCCCCHHHHHHHH
Confidence 35666666666654 7999999987522 23456777777765 33 5789999998889988889999
Q ss_pred HHhcccc--CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc-CCCccEEEecCCCCHHHHHH
Q psy5880 200 DVVLDSK--CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT-KGKLPIIGVGGVFSGKDAFE 276 (328)
Q Consensus 200 ~~l~~~~--~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-~~~ipvia~GGI~s~~da~~ 276 (328)
+.+ .+ .++++|- .| ..+..++..+++++.+ + +||++.+.+ +.+++.+
T Consensus 211 ~~l--~~~g~~i~~iE-------qP------------------~~~~~~~~~~~l~~~~~~--iPIa~dE~~-~~~~~~~ 260 (389)
T 2oz8_A 211 VAI--REAGHDLLWVE-------DP------------------ILRHDHDGLRTLRHAVTW--TQINSGEYL-DLQGKRL 260 (389)
T ss_dssp HHH--HHTTCCCSEEE-------SC------------------BCTTCHHHHHHHHHHCCS--SEEEECTTC-CHHHHHH
T ss_pred HHH--HhcCCCceEEe-------CC------------------CCCcCHHHHHHHHhhCCC--CCEEeCCCC-CHHHHHH
Confidence 999 88 5655541 11 1122356778888888 6 999999999 9999999
Q ss_pred HHHhc-cCeeeeh
Q psy5880 277 KIKAG-ASLVQIY 288 (328)
Q Consensus 277 ~l~~G-Ad~V~vg 288 (328)
+++.| +|+|++.
T Consensus 261 ~i~~~~~d~v~ik 273 (389)
T 2oz8_A 261 LLEAHAADILNVH 273 (389)
T ss_dssp HHHTTCCSEEEEC
T ss_pred HHHcCCCCEEEEC
Confidence 99988 9999997
No 172
>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*
Probab=98.08 E-value=8.7e-05 Score=70.45 Aligned_cols=148 Identities=13% Similarity=0.093 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..+++++.++++.. +++.+.+++++++ .+...+++++|+++. + .+++|.+.....++.++..+++
T Consensus 165 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~---------~~~~~e~v~avr~a~---g--~~~~l~vDan~~~~~~~a~~~~ 230 (392)
T 1tzz_A 165 GLSMLRGEMRGYLDRGYNVVKMKIGGAP---------IEEDRMRIEAVLEEI---G--KDAQLAVDANGRFNLETGIAYA 230 (392)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECSSSC---------HHHHHHHHHHHHHHH---T--TTCEEEEECTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCC---------HHHHHHHHHHHHHhc---C--CCCeEEEECCCCCCHHHHHHHH
Confidence 45667777776655 7999999988632 344567888888764 3 5789999999889988899999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.+.+++.++++
T Consensus 231 ~~l--~~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~ 281 (392)
T 1tzz_A 231 KML--RDYPLFWYE-------EV------------------GDPLDYALQAALAEFYP--GPMATGENLFSHQDARNLLR 281 (392)
T ss_dssp HHH--TTSCCSEEE-------CC------------------SCTTCHHHHHHHTTTCC--SCEEECTTCCSHHHHHHHHH
T ss_pred HHH--HHcCCCeec-------CC------------------CChhhHHHHHHHHhhCC--CCEEECCCCCCHHHHHHHHH
Confidence 999 889988762 11 11223566788888876 99999999999999999999
Q ss_pred hc-----cCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCC
Q psy5880 280 AG-----ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYN 316 (328)
Q Consensus 280 ~G-----Ad~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~ 316 (328)
.| +|+|++--... .|..-..++ ..+.+++|+.
T Consensus 282 ~~~~~~~~d~v~ik~~~~-GGit~~~~i----~~~A~~~gi~ 318 (392)
T 1tzz_A 282 YGGMRPDRDWLQFDCALS-YGLCEYQRT----LEVLKTHGWS 318 (392)
T ss_dssp HSCCCTTTCEECCCTTTT-TCHHHHHHH----HHHHHHTTCC
T ss_pred cCCCccCCcEEEECcccc-CCHHHHHHH----HHHHHHCCCC
Confidence 87 89999865443 233333333 3345566654
No 173
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=98.07 E-value=3.1e-05 Score=68.92 Aligned_cols=121 Identities=13% Similarity=0.154 Sum_probs=83.7
Q ss_pred HHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccC-
Q psy5880 129 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKC- 207 (328)
Q Consensus 129 a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~- 207 (328)
++.+| +|++-++.++- ....+.++++..++ .+.-++|=+.. ..++ +.+ .++
T Consensus 119 a~~~G--AD~ilLi~a~l---------~~~~l~~l~~~a~~--------lGl~~lvEv~~------~eE~-~~A--~~l~ 170 (251)
T 1i4n_A 119 ASSVG--ADAILIIARIL---------TAEQIKEIYEAAEE--------LGMDSLVEVHS------REDL-EKV--FSVI 170 (251)
T ss_dssp HHHTT--CSEEEEEGGGS---------CHHHHHHHHHHHHT--------TTCEEEEEECS------HHHH-HHH--HTTC
T ss_pred HHHcC--CCEEEEecccC---------CHHHHHHHHHHHHH--------cCCeEEEEeCC------HHHH-HHH--HhcC
Confidence 66666 99999988831 11345566655443 36777777652 3444 444 588
Q ss_pred CccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeee
Q psy5880 208 KVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287 (328)
Q Consensus 208 G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~v 287 (328)
|++.|-+.|+... ++ + ..++...++.+.++.++++|+-|||+|++|+.++..+ |++|.|
T Consensus 171 g~~iIGinnr~l~--------------t~-~-----~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLV 229 (251)
T 1i4n_A 171 RPKIIGINTRDLD--------------TF-E-----IKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK-VNAVLV 229 (251)
T ss_dssp CCSEEEEECBCTT--------------TC-C-----BCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-CSEEEE
T ss_pred CCCEEEEeCcccc--------------cC-C-----CCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEE
Confidence 9999988886432 01 1 1134556666777666899999999999999999999 999999
Q ss_pred hhHHhhcCchHH
Q psy5880 288 YTSFVYHGPPLV 299 (328)
Q Consensus 288 g~a~l~~gp~~~ 299 (328)
|++++.. ++..
T Consensus 230 G~aimr~-~d~~ 240 (251)
T 1i4n_A 230 GTSIMKA-ENPR 240 (251)
T ss_dssp CHHHHHC-SSHH
T ss_pred cHHHcCC-cCHH
Confidence 9999853 4433
No 174
>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}
Probab=98.06 E-value=7.1e-05 Score=71.38 Aligned_cols=147 Identities=13% Similarity=0.088 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCc--ch-hhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTA--NL-RKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKK 196 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~--g~-~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~ 196 (328)
..+++++.++++.. ++..+-+++++|... +. ...++.+...+.+++||++. + .+++|+++....++.++..
T Consensus 151 ~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~---G--~d~~l~vDan~~~~~~~A~ 225 (404)
T 4e5t_A 151 DADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSEAFCKQIRAAV---G--TKADLLFGTHGQFTVSGAK 225 (404)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCSBCCCHHHHHHHHHHHHHHHHHH---G--GGSEEEECCCSCBCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEeeCCCCCCcccccccccHHHHHHHHHHHHHHHHHc---C--CCCeEEEeCCCCcCHHHHH
Confidence 34555555555433 699999998876321 11 11223455667777777764 3 5789999999889998999
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHH
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFE 276 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~ 276 (328)
++++.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.+.+++.+
T Consensus 226 ~~~~~l--~~~~i~~iE-------eP------------------~~~~~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~ 276 (404)
T 4e5t_A 226 RLARRL--EAYDPLWFE-------EP------------------IPPEKPEDMAEVARYTS--IPVATGERLCTKYEFSR 276 (404)
T ss_dssp HHHHHH--GGGCCSEEE-------CC------------------SCTTCHHHHHHHHHHCS--SCEEECTTCCHHHHHHH
T ss_pred HHHHHH--hhcCCcEEE-------CC------------------CCcccHHHHHHHHhhCC--CCEEeCCCcCCHHHHHH
Confidence 999999 889988873 11 11223566788888887 99999999999999999
Q ss_pred HHHhc-cCeeeehhHHhhcCchHHHHH
Q psy5880 277 KIKAG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 277 ~l~~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
+++.| +|.|++--.-. .|..-..++
T Consensus 277 ~i~~~a~d~v~~d~~~~-GGit~~~~i 302 (404)
T 4e5t_A 277 VLETGAASILQMNLGRV-GGLLEAKKI 302 (404)
T ss_dssp HHHHTCCSEECCCTTTS-SCHHHHHHH
T ss_pred HHHhCCCCEEecCcccc-CCHHHHHHH
Confidence 99988 89998875543 344444444
No 175
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=98.06 E-value=3.6e-05 Score=68.32 Aligned_cols=127 Identities=14% Similarity=0.150 Sum_probs=83.3
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.+|++.+.+++ +|++.++.-.+. .+.+.++.+++ .++-+.+=+.|..+.+.+ +.+
T Consensus 99 ~~~i~~~~~aG--Ad~itvH~Ea~~-----------~~~~~i~~ir~--------~G~k~Gvalnp~Tp~e~l----~~~ 153 (246)
T 3inp_A 99 DALIESFAKAG--ATSIVFHPEASE-----------HIDRSLQLIKS--------FGIQAGLALNPATGIDCL----KYV 153 (246)
T ss_dssp HHHHHHHHHHT--CSEEEECGGGCS-----------CHHHHHHHHHT--------TTSEEEEEECTTCCSGGG----TTT
T ss_pred HHHHHHHHHcC--CCEEEEccccch-----------hHHHHHHHHHH--------cCCeEEEEecCCCCHHHH----HHH
Confidence 45666677777 999998754221 13456666654 345566778887664332 223
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC---CCccEEEecCCCCHHHHHHHHH
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK---GKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~---~~ipvia~GGI~s~~da~~~l~ 279 (328)
.+ ++|.|.+-.... |+.|-...|..++.++++|+..+ .+++|.+.|||+ ++.+.++.+
T Consensus 154 --l~-~vD~VlvMsV~P---------------GfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~ 214 (246)
T 3inp_A 154 --ES-NIDRVLIMSVNP---------------GFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAV 214 (246)
T ss_dssp --GG-GCSEEEEECSCT---------------TC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHT
T ss_pred --Hh-cCCEEEEeeecC---------------CCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHH
Confidence 22 578876543221 13333334667788888887642 248999999998 788999999
Q ss_pred hccCeeeehhHHhh
Q psy5880 280 AGASLVQIYTSFVY 293 (328)
Q Consensus 280 ~GAd~V~vg~a~l~ 293 (328)
+|||.+.+||++..
T Consensus 215 aGAD~~V~GSaIf~ 228 (246)
T 3inp_A 215 CGVNAFVAGSAIFN 228 (246)
T ss_dssp TTCCEEEESHHHHT
T ss_pred cCCCEEEEehHHhC
Confidence 99999999999873
No 176
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}
Probab=98.05 E-value=5.7e-05 Score=71.42 Aligned_cols=142 Identities=13% Similarity=0.117 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.+ ++..+-++++| +++.-.+.+++||++ ++ .+++|.++....++.++..++++
T Consensus 146 ~e~~~~~a~~~~~~G~~~iKiK~G~----------~~~~d~~~v~avR~a---~g--~~~~l~vDan~~~~~~~a~~~~~ 210 (378)
T 3eez_A 146 VEETRAVIDRYRQRGYVAHSVKIGG----------DVERDIARIRDVEDI---RE--PGEIVLYDVNRGWTRQQALRVMR 210 (378)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCS----------CHHHHHHHHHHHTTS---CC--TTCEEEEECTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEeccCC----------CHHHHHHHHHHHHHH---cC--CCceEEEECCCCCCHHHHHHHHH
Confidence 3455555554433 69999999986 123345566666654 33 57899999999999888899999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.|+ +|- .| +. .++..+++++.++ +||++.+.+.+++|+.++++.
T Consensus 211 ~l--~~~~i-~iE-------qP-------------~~-------~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~l~~ 258 (378)
T 3eez_A 211 AT--EDLHV-MFE-------QP-------------GE-------TLDDIAAIRPLHS--APVSVDECLVTLQDAARVARD 258 (378)
T ss_dssp HT--GGGTC-CEE-------CC-------------SS-------SHHHHHHTGGGCC--CCEEECTTCCSHHHHHHHHHT
T ss_pred Hh--ccCCe-EEe-------cC-------------CC-------CHHHHHHHHhhCC--CCEEECCCCCCHHHHHHHHHc
Confidence 99 88877 652 11 11 2456678888887 999999999999999999998
Q ss_pred c-cCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 281 G-ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 281 G-Ad~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
| +|.|++-..-+ .|+.-..++.. +.+.+|+
T Consensus 259 ~~~d~v~ik~~~~-GGit~~~~ia~----~A~~~g~ 289 (378)
T 3eez_A 259 GLAEVFGIKLNRV-GGLTRAARMRD----IALTHGI 289 (378)
T ss_dssp TCCSEEEEEHHHH-TSHHHHHHHHH----HHHHTTC
T ss_pred CCCCEEEeCchhc-CCHHHHHHHHH----HHHHcCC
Confidence 7 99999988775 46665555533 3444554
No 177
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=98.05 E-value=0.00011 Score=67.33 Aligned_cols=155 Identities=16% Similarity=0.154 Sum_probs=93.6
Q ss_pred CCcccccCCCCcCChhhHHHHHHHhHHHHHHHhhc--CccceEEeccCCCCC-cC-ccCCCchHHHHHHHHHHHHHhhhh
Q psy5880 19 SGEWGCTPTHNMLSSFARMRAWVLQFWLLGILKFG--DVAHYFVVNVSSPNT-AN-LRKLQAKDQLKHLLKTVVETRNQL 94 (328)
Q Consensus 19 ~~~~g~~~~~~~~~~~~~v~~~~l~~y~~~~~~l~--~~~~~v~~n~sspN~-~g-l~~~~~~~~L~~ll~~v~~~~~~~ 94 (328)
...+++|++.+. .++|.+.++.+. ..+|++++|++|||+ .| ..-.++++.+.++++++++..
T Consensus 98 ~~p~~v~l~~~~-----------~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~--- 163 (311)
T 1ep3_A 98 ELPIIANVAGSE-----------EADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVS--- 163 (311)
T ss_dssp TSCEEEEECCSS-----------HHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHC---
T ss_pred CCcEEEEEcCCC-----------HHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhc---
Confidence 456888887652 246888888776 458999999999997 33 222235667788888887663
Q ss_pred cCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEE-ccC-----CCCCc---------chhhhhhhHH
Q psy5880 95 ALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVV-NVS-----SPNTA---------NLRKLQAKDQ 159 (328)
Q Consensus 95 ~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~iei-N~s-----cPn~~---------g~~~~~~~~~ 159 (328)
..|+++|+.++++ ...++++.++.++ +|+|.+ |.. .+.+. +.........
T Consensus 164 ----~~pv~vk~~~~~~---------~~~~~a~~l~~~G--~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~ 228 (311)
T 1ep3_A 164 ----KVPLYVKLSPNVT---------DIVPIAKAVEAAG--ADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPV 228 (311)
T ss_dssp ----SSCEEEEECSCSS---------CSHHHHHHHHHTT--CSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHH
T ss_pred ----CCCEEEEECCChH---------HHHHHHHHHHHcC--CCEEEEeCCCcccccCcccCCccccCCCCcccCccchHH
Confidence 2699999987652 3456777777776 999886 100 11110 0000000112
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEec
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
..+.++.+++. .++||++ ..++.. ..++.+.+ ++|+|++.+..
T Consensus 229 ~~~~i~~i~~~-------~~ipvia--~GGI~~--~~d~~~~l---~~GAd~V~vg~ 271 (311)
T 1ep3_A 229 ALKLIHQVAQD-------VDIPIIG--MGGVAN--AQDVLEMY---MAGASAVAVGT 271 (311)
T ss_dssp HHHHHHHHHTT-------CSSCEEE--CSSCCS--HHHHHHHH---HHTCSEEEECT
T ss_pred HHHHHHHHHHh-------cCCCEEE--ECCcCC--HHHHHHHH---HcCCCEEEECH
Confidence 23455555443 5789875 444432 33444444 57999997654
No 178
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=98.04 E-value=3.6e-05 Score=73.47 Aligned_cols=135 Identities=15% Similarity=0.088 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.+ ++..+-+ +++|.........+.+...+++++||++ ++ .++||++.....++.++..++++
T Consensus 126 ~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~~~~~~~~~~d~e~v~avR~a---vG--~d~~L~vDaN~~~~~~~A~~~~~ 199 (405)
T 3rr1_A 126 PADVIAGMKALQAGGFDHFKL-NGCEEMGIIDTSRAVDAAVARVAEIRSA---FG--NTVEFGLDFHGRVSAPMAKVLIK 199 (405)
T ss_dssp HHHHHHHHHHHHHTTCCEEEE-ESCCSSSCBCSHHHHHHHHHHHHHHHHT---TG--GGSEEEEECCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEE-ecCCcccccccchhHHHHHHHHHHHHHH---hC--CCceEEEECCCCCCHHHHHHHHH
Confidence 4455555554433 6999998 7775432111122344556667777665 44 57899999998899989999999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.|+++|- .| + .+..++..+++++.++ +||++.+.+.+..++.++++.
T Consensus 200 ~L--~~~~i~~iE-------eP-------------~-----~~~d~~~~~~l~~~~~--iPIa~dE~i~~~~~~~~~l~~ 250 (405)
T 3rr1_A 200 EL--EPYRPLFIE-------EP-------------V-----LAEQAETYARLAAHTH--LPIAAGERMFSRFDFKRVLEA 250 (405)
T ss_dssp HH--GGGCCSCEE-------CS-------------S-----CCSSTHHHHHHHTTCS--SCEEECTTCCSHHHHHHHHHH
T ss_pred HH--HhcCCCEEE-------CC-------------C-----CcccHHHHHHHHhcCC--CCEEecCCcCCHHHHHHHHHH
Confidence 99 888888773 11 1 1112456778888877 999999999999999999998
Q ss_pred c-cCeeeehhHH
Q psy5880 281 G-ASLVQIYTSF 291 (328)
Q Consensus 281 G-Ad~V~vg~a~ 291 (328)
| +|.|++--.-
T Consensus 251 ~a~d~v~~d~~~ 262 (405)
T 3rr1_A 251 GGVSILQPDLSH 262 (405)
T ss_dssp CCCSEECCBTTT
T ss_pred hCCCeEEEChhh
Confidence 7 8999885443
No 179
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}
Probab=98.04 E-value=8.4e-05 Score=70.97 Aligned_cols=134 Identities=10% Similarity=0.029 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhcc-cccEEEEcc----CCCCCc-chhh--hhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCh
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNV----SSPNTA-NLRK--LQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSL 192 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~----scPn~~-g~~~--~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~ 192 (328)
..+++++.++++.. +++.+.+++ +...++ +... ..+.+...+++++||++. + .+++|.++....++.
T Consensus 149 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~~~G~~~~~~~~~~~~e~v~avRea~---G--~d~~l~vDan~~~~~ 223 (410)
T 2qq6_A 149 SNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVREAV---G--PEVEVAIDMHGRFDI 223 (410)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSCSSSCCCCHHHHHHHHHHHHHHHHHH---C--SSSEEEEECTTCCCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCcCccccchhhHHHHHHHHHHHHHhc---C--CCCEEEEECCCCCCH
Confidence 45777777777655 799999998 321111 0000 123456677788887763 4 578999999888998
Q ss_pred hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHH
Q psy5880 193 DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK 272 (328)
Q Consensus 193 ~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~ 272 (328)
++..++++.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.+.+
T Consensus 224 ~~a~~~~~~l--~~~~i~~iE-------eP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~ 274 (410)
T 2qq6_A 224 PSSIRFARAM--EPFGLLWLE-------EP------------------TPPENLDALAEVRRSTS--TPICAGENVYTRF 274 (410)
T ss_dssp HHHHHHHHHH--GGGCCSEEE-------CC------------------SCTTCHHHHHHHHTTCS--SCEEECTTCCSHH
T ss_pred HHHHHHHHHH--hhcCCCeEE-------CC------------------CChhhHHHHHHHHhhCC--CCEEeCCCcCCHH
Confidence 8899999999 888888762 01 11223566788888876 9999999999999
Q ss_pred HHHHHHHhc-cCeeeeh
Q psy5880 273 DAFEKIKAG-ASLVQIY 288 (328)
Q Consensus 273 da~~~l~~G-Ad~V~vg 288 (328)
++.++++.| +|.|++=
T Consensus 275 ~~~~~i~~~~~d~v~ik 291 (410)
T 2qq6_A 275 DFRELFAKRAVDYVMPD 291 (410)
T ss_dssp HHHHHHHTTCCSEECCB
T ss_pred HHHHHHHcCCCCEEecC
Confidence 999999987 8999874
No 180
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=98.04 E-value=0.0002 Score=65.23 Aligned_cols=108 Identities=10% Similarity=0.082 Sum_probs=66.7
Q ss_pred CCCCEEEEeCCC----CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHH
Q psy5880 178 PLPPILVKIAPD----LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMY 253 (328)
Q Consensus 178 ~~~Pv~vKl~~~----~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~ 253 (328)
..+|+++=-..+ .+.+-+...++.+ .++|+|+|-+.-+ + +..+++.
T Consensus 170 ~GlpvIie~~~G~~~~~d~e~i~~aariA--~elGAD~VKt~~t--------------------~--------e~~~~vv 219 (295)
T 3glc_A 170 VGMPTMAVTGVGKDMVRDQRYFSLATRIA--AEMGAQIIKTYYV--------------------E--------KGFERIV 219 (295)
T ss_dssp TTCCEEEEECC----CCSHHHHHHHHHHH--HHTTCSEEEEECC--------------------T--------TTHHHHH
T ss_pred cCCEEEEECCCCCccCCCHHHHHHHHHHH--HHhCCCEEEeCCC--------------------H--------HHHHHHH
Confidence 468998832111 2322245577888 8999999854411 1 1135566
Q ss_pred HHcCCCccEEEecCCCC-HHH----HHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCCCHHHH
Q psy5880 254 KLTKGKLPIIGVGGVFS-GKD----AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQA 321 (328)
Q Consensus 254 ~~~~~~ipvia~GGI~s-~~d----a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~si~e~ 321 (328)
+..+ +||++.||+.+ .++ +.+++++||+.|.+||.++.. ++ +..+.+.+.....+ |. |++|.
T Consensus 220 ~~~~--vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~-~d-p~~~~~al~~ivh~-~~-s~~eA 286 (295)
T 3glc_A 220 AGCP--VPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQS-DH-PVAMMKAVQAVVHH-NE-TADRA 286 (295)
T ss_dssp HTCS--SCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTS-SS-HHHHHHHHHHHHHH-CC-CHHHH
T ss_pred HhCC--CcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcC-cC-HHHHHHHHHHHHhC-CC-CHHHH
Confidence 6665 99999999984 444 455668999999999999743 43 34444445444332 22 45543
No 181
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=98.03 E-value=6.7e-06 Score=73.09 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=71.7
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++|+.. .+.|+|.+++..-... ..| .+..++.++++.+.+. +|+-..|||+|.++
T Consensus 32 dP~~~a~~~--~~~gad~lhvvDld~a---------------~~~---~~~~~~~i~~i~~~~~--~pl~vGGGIrs~e~ 89 (243)
T 4gj1_A 32 NPLKKFKEY--EKAGAKELHLVDLTGA---------------KDP---SKRQFALIEKLAKEVS--VNLQVGGGIRSKEE 89 (243)
T ss_dssp CHHHHHHHH--HHHTCCEEEEEEHHHH---------------HCG---GGCCHHHHHHHHHHCC--SEEEEESSCCCHHH
T ss_pred CHHHHHHHH--HHCCCCEEEEEecCcc---------------ccc---chhHHHHHHHHHHhcC--CCeEeccccccHHH
Confidence 478889999 8999999988642111 011 1234678899998887 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
+.+++.+||+-|.++|+++ ++|+++.++.+.
T Consensus 90 ~~~~l~~GadkVii~t~a~-~~p~li~e~~~~ 120 (243)
T 4gj1_A 90 VKALLDCGVKRVVIGSMAI-KDATLCLEILKE 120 (243)
T ss_dssp HHHHHHTTCSEEEECTTTT-TCHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEccccc-cCCchHHHHHhc
Confidence 9999999999999999997 569998887553
No 182
>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*
Probab=98.01 E-value=3e-05 Score=74.38 Aligned_cols=136 Identities=11% Similarity=0.041 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcc-----------------------hhhhhhhHHHHHHHHHHHHHHHhhcCC
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTAN-----------------------LRKLQAKDQLKHLLKTVVETRNQLAVK 177 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g-----------------------~~~~~~~~~~~~i~~~v~~~~~~~~~~ 177 (328)
.+++++.++++.+ ++..+-+.+++|.... ....++.+...+++++||++ ++
T Consensus 144 ~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~v~avR~a---~G-- 218 (418)
T 3r4e_A 144 IAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPKLFEELRKT---YG-- 218 (418)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECCTTC------------------CCCCEEEECHHHHHHHHHHHHHHHHHH---HC--
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHH---cC--
Confidence 4555555555443 6999999998864210 00111234556677777766 44
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.+++|+++....++.++..++++.| .+.|+++|- .| + .+..++..+++++.++
T Consensus 219 ~d~~l~vDaN~~~~~~~A~~~~~~L--~~~~i~~iE-------qP-------------~-----~~~d~~~~~~l~~~~~ 271 (418)
T 3r4e_A 219 FDHHLLHDGHHRYTPQEAANLGKML--EPYQLFWLE-------DC-------------T-----PAENQEAFRLVRQHTV 271 (418)
T ss_dssp SSSEEEEECTTCSCHHHHHHHHHHH--GGGCCSEEE-------SC-------------S-----CCSSGGGGHHHHHHCC
T ss_pred CCCeEEEeCCCCCCHHHHHHHHHHH--HhhCCCEEE-------CC-------------C-----CccCHHHHHHHHhcCC
Confidence 6889999999999998999999999 889988873 11 1 0112344677888887
Q ss_pred CCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHH
Q psy5880 258 GKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSF 291 (328)
Q Consensus 258 ~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~ 291 (328)
+||++.+.+.+.+++.++++.| +|.|++--.-
T Consensus 272 --iPIa~dE~~~~~~~~~~~l~~~a~d~v~~k~~~ 304 (418)
T 3r4e_A 272 --TPLAVGEIFNTIWDAKDLIQNQLIDYIRATVVG 304 (418)
T ss_dssp --SCEEECTTCCSGGGTHHHHHTTCCSEECCCTTT
T ss_pred --CCEEEcCCcCCHHHHHHHHHcCCCCeEecCccc
Confidence 9999999999999999999988 8999886554
No 183
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*
Probab=98.00 E-value=0.00016 Score=68.69 Aligned_cols=133 Identities=10% Similarity=-0.005 Sum_probs=98.3
Q ss_pred HHHHHHHH-HHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 122 VLDSVKGI-LKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 122 i~~~~~~a-~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
.+++++.+ +++.+ ++..+-+.++++... ...+++.-.+.+++||++. + .+++|+++....++.++..+++
T Consensus 140 ~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~---~~~~~~~d~~~v~avR~a~---g--~~~~l~vDaN~~~~~~~A~~~~ 211 (393)
T 4dwd_A 140 VDEVVREVARRVEAEQPAAVKIRWDGDRTR---CDVDIPGDIAKARAVRELL---G--PDAVIGFDANNGYSVGGAIRVG 211 (393)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCCTTC---CSCCHHHHHHHHHHHHHHH---C--TTCCEEEECTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccCCCCcc---cccCHHHHHHHHHHHHHHh---C--CCCeEEEECCCCCCHHHHHHHH
Confidence 34455444 44332 599999999875431 1223455667777777763 4 6889999999999998999999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+.|+++|- .| ..+..++..+++++.++ +||++...+.+.+++.++++
T Consensus 212 ~~L--~~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~ 262 (393)
T 4dwd_A 212 RAL--EDLGYSWFE-------EP------------------VQHYHVGAMGEVAQRLD--ITVSAGEQTYTLQALKDLIL 262 (393)
T ss_dssp HHH--HHTTCSEEE-------CC------------------SCTTCHHHHHHHHHHCS--SEEEBCTTCCSHHHHHHHHH
T ss_pred HHH--HhhCCCEEE-------CC------------------CCcccHHHHHHHHhhCC--CCEEecCCcCCHHHHHHHHH
Confidence 999 889988873 11 11123566788888887 99999999999999999999
Q ss_pred hccCeeeehhHH
Q psy5880 280 AGASLVQIYTSF 291 (328)
Q Consensus 280 ~GAd~V~vg~a~ 291 (328)
.|+|.|++--.-
T Consensus 263 ~~~d~v~~k~~~ 274 (393)
T 4dwd_A 263 SGVRMVQPDIVK 274 (393)
T ss_dssp HTCCEECCCTTT
T ss_pred cCCCEEEeCccc
Confidence 889999986544
No 184
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=97.99 E-value=3e-05 Score=67.19 Aligned_cols=95 Identities=28% Similarity=0.303 Sum_probs=69.4
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
...++++.+ ...|+..+.+++... .|...|. ..+.++++++..+ +|+|++||+.++++
T Consensus 131 ~~~~~i~~~--~~~~~~~vli~~~~~-------------~g~~~g~-----~~~~i~~~~~~~~--~Pvia~~g~~~~~~ 188 (237)
T 3cwo_X 131 LLRDWVVEV--EKRGAGEILLTSIDR-------------DGTKSGY-----DTEMIRFVRPLTT--LPIIASGGAGKMEH 188 (237)
T ss_dssp EHHHHHHHH--HHHTCSEEEEEETTT-------------TTCCSCC-----CHHHHHHHGGGCC--SCEEEESCCCSHHH
T ss_pred CHHHHHHHH--hhcCCCeEEEEecCC-------------CCccccc-----cHHHHHHHHHhcC--CCEEecCCCCCHHH
Confidence 356667777 677777676654211 1222232 1577888887765 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
+.++++.||+.|.+|++++ .+|.-+.++++ ++.+.|+
T Consensus 189 ~~~~~~~G~~~~~vg~a~~-~~~~~~~~~~~----~l~~~~~ 225 (237)
T 3cwo_X 189 FLEAFLAGADAALAASVFH-FREIDVRELKE----YLKKHGV 225 (237)
T ss_dssp HHHHHHHTCSEEEESHHHH-TTSSCHHHHHH----HHHTTTC
T ss_pred HHHHHHcCcHHHhhhHHHH-cCCCCHHHHHH----HHHHCCC
Confidence 9999999999999999997 56877777654 4566666
No 185
>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A
Probab=97.99 E-value=7.2e-05 Score=72.14 Aligned_cols=125 Identities=9% Similarity=-0.043 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.. +++.+.+++++ +.+...+.+++||++. + .+++|.+.....++.++..++++
T Consensus 199 ~e~~~~~a~~~~~~Gf~~vKik~g~----------~~~~d~e~v~avR~a~---G--~d~~l~vDan~~~~~~~a~~~~~ 263 (441)
T 2hxt_A 199 DEKLVRLAKEAVADGFRTIKLKVGA----------NVQDDIRRCRLARAAI---G--PDIAMAVDANQRWDVGPAIDWMR 263 (441)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCS----------CHHHHHHHHHHHHHHH---C--SSSEEEEECTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEccCC----------CHHHHHHHHHHHHHhc---C--CCCeEEEECCCCCCHHHHHHHHH
Confidence 4567766666654 79999998873 1345567788888763 3 57899999988899888899999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.|+++|- .| ..+..++..+++++.++ .+||++.+.+++++++.++++.
T Consensus 264 ~l--~~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~-~iPIa~dE~~~~~~~~~~~i~~ 315 (441)
T 2hxt_A 264 QL--AEFDIAWIE-------EP------------------TSPDDVLGHAAIRQGIT-PVPVSTGEHTQNRVVFKQLLQA 315 (441)
T ss_dssp TT--GGGCCSCEE-------CC------------------SCTTCHHHHHHHHHHHT-TSCEEECTTCCSHHHHHHHHHH
T ss_pred HH--HhcCCCeee-------CC------------------CCHHHHHHHHHHHhhCC-CCCEEEeCCcCCHHHHHHHHHc
Confidence 99 888888662 11 11123566677888762 2999999999999999999998
Q ss_pred c-cCeeeehh
Q psy5880 281 G-ASLVQIYT 289 (328)
Q Consensus 281 G-Ad~V~vg~ 289 (328)
| +|+|++--
T Consensus 316 ~~~d~v~ik~ 325 (441)
T 2hxt_A 316 GAVDLIQIDA 325 (441)
T ss_dssp TCCSEECCCT
T ss_pred CCCCEEEeCc
Confidence 8 89998753
No 186
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}
Probab=97.99 E-value=0.00012 Score=69.95 Aligned_cols=146 Identities=16% Similarity=0.107 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCc--ch-hhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTA--NL-RKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKD 197 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~--g~-~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ 197 (328)
.+++++.++++.+ ++..+-+++++|... +. ...++.+...+.+++||++ ++ .+++|+++....++.++..+
T Consensus 145 ~e~~~~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a---~G--~d~~l~vDaN~~~~~~~A~~ 219 (412)
T 4e4u_A 145 PDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREA---VG--SKADLLFGTHGQMVPSSAIR 219 (412)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHH---HT--TSSEEEECCCSCBCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCccccccccchhhHHHHHHHHHHHHHH---hC--CCCeEEEECCCCCCHHHHHH
Confidence 4555555555433 699999998876321 11 1112345566677777776 34 67899999999999989999
Q ss_pred HHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHH
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~ 277 (328)
+++.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.+..++.++
T Consensus 220 ~~~~L--~~~~i~~iE-------eP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~ 270 (412)
T 4e4u_A 220 LAKRL--EKYDPLWFE-------EP------------------VPPGQEEAIAQVAKHTS--IPIATGERLTTKYEFHKL 270 (412)
T ss_dssp HHHHH--GGGCCSEEE-------CC------------------SCSSCHHHHHHHHHTCS--SCEEECTTCCHHHHHHHH
T ss_pred HHHHh--hhcCCcEEE-------CC------------------CChhhHHHHHHHHhhCC--CCEEecCccCCHHHHHHH
Confidence 99999 889988773 11 11123566788888887 999999999999999999
Q ss_pred HHhc-cCeeeehhHHhhcCchHHHHH
Q psy5880 278 IKAG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 278 l~~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
++.| +|.|++--.-. .|..-..++
T Consensus 271 i~~~a~d~v~~d~~~~-GGit~~~ki 295 (412)
T 4e4u_A 271 LQAGGASILQLNVARV-GGLLEAKKI 295 (412)
T ss_dssp HHTTCCSEECCCTTTT-TSHHHHHHH
T ss_pred HHcCCCCEEEeCcccc-CCHHHHHHH
Confidence 9988 89999865543 344334444
No 187
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=97.97 E-value=0.00021 Score=62.62 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=79.8
Q ss_pred ccEEEEccCCCCCcchhhhhhhHHHHHHHH---HHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCC-ccE
Q psy5880 136 AHYFVVNVSSPNTANLRKLQAKDQLKHLLK---TVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCK-VDG 211 (328)
Q Consensus 136 ~d~ieiN~scPn~~g~~~~~~~~~~~~i~~---~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G-~d~ 211 (328)
+|.+.+|..... +.+.+.++ .+++ .+.-+.+=+.|..+.+ .++.+ .+.| +|.
T Consensus 86 Ad~itvH~ea~~----------~~~~~~i~~~~~i~~--------~G~k~gvalnp~tp~~----~~~~~--l~~g~~D~ 141 (227)
T 1tqx_A 86 SNQLTFHFEALN----------EDTERCIQLAKEIRD--------NNLWCGISIKPKTDVQ----KLVPI--LDTNLINT 141 (227)
T ss_dssp SSEEEEEGGGGT----------TCHHHHHHHHHHHHT--------TTCEEEEEECTTSCGG----GGHHH--HTTTCCSE
T ss_pred CCEEEEeecCCc----------cCHHHHHHHHHHHHH--------cCCeEEEEeCCCCcHH----HHHHH--hhcCCcCE
Confidence 688988766321 01334455 5554 3556677777765533 23444 4665 999
Q ss_pred EEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 212 LIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 212 i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
|.+-.-.. |+.|....|..++.++++++..+ +++|.+.|||+ .+.+.++.++|||.+.+||++
T Consensus 142 VlvmsV~p---------------Gf~gq~f~~~~l~ki~~lr~~~~-~~~I~VdGGI~-~~ti~~~~~aGAd~~V~GsaI 204 (227)
T 1tqx_A 142 VLVMTVEP---------------GFGGQSFMHDMMGKVSFLRKKYK-NLNIQVDGGLN-IETTEISASHGANIIVAGTSI 204 (227)
T ss_dssp EEEESSCT---------------TCSSCCCCGGGHHHHHHHHHHCT-TCEEEEESSCC-HHHHHHHHHHTCCEEEESHHH
T ss_pred EEEeeecc---------------CCCCcccchHHHHHHHHHHHhcc-CCeEEEECCCC-HHHHHHHHHcCCCEEEEeHHH
Confidence 86654322 23343334567888999998874 59999999997 789999999999999999999
Q ss_pred hh
Q psy5880 292 VY 293 (328)
Q Consensus 292 l~ 293 (328)
+.
T Consensus 205 f~ 206 (227)
T 1tqx_A 205 FN 206 (227)
T ss_dssp HT
T ss_pred hC
Confidence 74
No 188
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=97.96 E-value=0.00019 Score=61.62 Aligned_cols=125 Identities=16% Similarity=0.047 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
..+++.+.+++ +|++.+|.... .+.+.++++.+++. +.++.+=+. ..+. ..+.++.+
T Consensus 67 ~~~~~~a~~~G--ad~v~vh~~~~----------~~~~~~~~~~~~~~--------g~~~gv~~~-s~~~--p~~~~~~~ 123 (207)
T 3ajx_A 67 ELEADIAFKAG--ADLVTVLGSAD----------DSTIAGAVKAAQAH--------NKGVVVDLI-GIED--KATRAQEV 123 (207)
T ss_dssp HHHHHHHHHTT--CSEEEEETTSC----------HHHHHHHHHHHHHH--------TCEEEEECT-TCSS--HHHHHHHH
T ss_pred HHHHHHHHhCC--CCEEEEeccCC----------hHHHHHHHHHHHHc--------CCceEEEEe-cCCC--hHHHHHHH
Confidence 44567777777 99999876621 11233444444432 445655443 2211 22334555
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhcc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGA 282 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GA 282 (328)
.+.|+|++.++-.... +..|.. +.. +.++++++. + +|+++.|||+ ++.+.+++++||
T Consensus 124 --~~~g~d~v~~~~~~~~--------------~~~g~~--~~~-~~i~~~~~~-~--~pi~v~GGI~-~~~~~~~~~aGa 180 (207)
T 3ajx_A 124 --RALGAKFVEMHAGLDE--------------QAKPGF--DLN-GLLAAGEKA-R--VPFSVAGGVK-VATIPAVQKAGA 180 (207)
T ss_dssp --HHTTCSEEEEECCHHH--------------HTSTTC--CTH-HHHHHHHHH-T--SCEEEESSCC-GGGHHHHHHTTC
T ss_pred --HHhCCCEEEEEecccc--------------cccCCC--chH-HHHHHhhCC-C--CCEEEECCcC-HHHHHHHHHcCC
Confidence 5678999844422110 011211 222 555555544 4 8999999998 889999999999
Q ss_pred CeeeehhHHhh
Q psy5880 283 SLVQIYTSFVY 293 (328)
Q Consensus 283 d~V~vg~a~l~ 293 (328)
|.|.+||+++.
T Consensus 181 d~vvvGsaI~~ 191 (207)
T 3ajx_A 181 EVAVAGGAIYG 191 (207)
T ss_dssp SEEEESHHHHT
T ss_pred CEEEEeeeccC
Confidence 99999999974
No 189
>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A
Probab=97.96 E-value=0.00014 Score=67.84 Aligned_cols=121 Identities=14% Similarity=0.104 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.. +++.+.+++++ +.+...+++++||++ + .+++|.+.....++.++..++++
T Consensus 140 ~~~~~~~a~~~~~~Gf~~iKik~g~----------~~~~d~~~v~avr~~----g--~~~~l~vDan~~~~~~~a~~~~~ 203 (345)
T 2zad_A 140 VENRVKEAKKIFEEGFRVIKIKVGE----------NLKEDIEAVEEIAKV----T--RGAKYIVDANMGYTQKEAVEFAR 203 (345)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCS----------CHHHHHHHHHHHHHH----S--TTCEEEEECTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcCEEEEeecC----------CHHHHHHHHHHHHhh----C--CCCeEEEECCCCCCHHHHHHHHH
Confidence 4556666666554 79999998774 223345677777775 2 67899998888888888889999
Q ss_pred HhccccCCcc--EEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 201 VVLDSKCKVD--GLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 201 ~l~~~~~G~d--~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
.+ .+.|++ +|- .| ..+..++..+++++.++ +||++.+.+.+++++.+++
T Consensus 204 ~l--~~~~i~~~~iE-------~P------------------~~~~~~~~~~~l~~~~~--ipia~dE~~~~~~~~~~~i 254 (345)
T 2zad_A 204 AV--YQKGIDIAVYE-------QP------------------VRREDIEGLKFVRFHSP--FPVAADESARTKFDVMRLV 254 (345)
T ss_dssp HH--HHTTCCCSEEE-------CC------------------SCTTCHHHHHHHHHHSS--SCEEESTTCCSHHHHHHHH
T ss_pred HH--HhcCCCeeeee-------CC------------------CCcccHHHHHHHHHhCC--CCEEEeCCcCCHHHHHHHH
Confidence 99 888888 652 11 11223566788888887 9999999999999999999
Q ss_pred Hhc-cCeeee
Q psy5880 279 KAG-ASLVQI 287 (328)
Q Consensus 279 ~~G-Ad~V~v 287 (328)
+.| +|.|++
T Consensus 255 ~~~~~d~v~i 264 (345)
T 2zad_A 255 KEEAVDYVNI 264 (345)
T ss_dssp HHTCCSEEEE
T ss_pred HhCCCCEEEE
Confidence 988 999998
No 190
>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A
Probab=97.93 E-value=6.4e-05 Score=67.17 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=71.6
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC---CChhh-HHHHHHHhccccCCcc
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD---LSLDE-KKDIADVVLDSKCKVD 210 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~---~~~~~-~~~~a~~l~~~~~G~d 210 (328)
++|.|++-+. . +.-...+.+.+.+-+.+|++++.. .+. .+|+-.. +++++ +...++.+ .++|+|
T Consensus 98 GAdEIDmVin---i-g~l~~g~~~~v~~ei~~v~~a~~~----~g~--~lKvIlEt~~L~d~e~i~~a~~ia--~eaGAD 165 (260)
T 1p1x_A 98 GADEVDVVFP---Y-RALMAGNEQVGFDLVKACKEACAA----ANV--LLKVIIETGELKDEALIRKASEIS--IKAGAD 165 (260)
T ss_dssp TCSEEEEECC---H-HHHHTTCCHHHHHHHHHHHHHHHH----TTC--EEEEECCHHHHCSHHHHHHHHHHH--HHTTCS
T ss_pred CCCEEEEecc---H-HhhhCCCHHHHHHHHHHHHHHhcc----cCC--eEEEEEecccCCcHHHHHHHHHHH--HHhCCC
Confidence 4888875332 1 111122345566666677776532 223 4554332 45556 56888888 999999
Q ss_pred EEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHH-----cCCCccEEEecCCCCHHHHHHHHHhccC
Q psy5880 211 GLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKL-----TKGKLPIIGVGGVFSGKDAFEKIKAGAS 283 (328)
Q Consensus 211 ~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~-----~~~~ipvia~GGI~s~~da~~~l~~GAd 283 (328)
+|-.+.. +. .|.+ +++.++.+++. +..+++|-++|||+|.+|+.+++++||+
T Consensus 166 fVKTSTG-f~----------------~~gA----t~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~aga~ 222 (260)
T 1p1x_A 166 FIKTSTG-KV----------------AVNA----TPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADE 222 (260)
T ss_dssp EEECCCS-CS----------------SCCC----CHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHH
T ss_pred EEEeCCC-CC----------------CCCC----CHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHhhhh
Confidence 9954321 11 1111 13444445544 4557999999999999999999999876
No 191
>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1
Probab=97.90 E-value=0.00017 Score=64.92 Aligned_cols=79 Identities=14% Similarity=0.071 Sum_probs=52.4
Q ss_pred EEEEeCCC---CChhh-HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc-
Q psy5880 182 ILVKIAPD---LSLDE-KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT- 256 (328)
Q Consensus 182 v~vKl~~~---~~~~~-~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~- 256 (328)
..+|+-.. +++++ +...++.+ .++|+|+|-.+.. +. .|.+ . ++.++.+++.+
T Consensus 157 ~~lKVIlEt~~L~d~e~i~~A~~ia--~eaGADfVKTSTG-f~----------------~~gA-T---~edv~lm~~~v~ 213 (281)
T 2a4a_A 157 KILKVIIEVGELKTEDLIIKTTLAV--LNGNADFIKTSTG-KV----------------QINA-T---PSSVEYIIKAIK 213 (281)
T ss_dssp SEEEEECCHHHHCSHHHHHHHHHHH--HTTTCSEEECCCS-CS----------------SCCC-C---HHHHHHHHHHHH
T ss_pred CceEEEEecccCCcHHHHHHHHHHH--HHhCCCEEEeCCC-CC----------------CCCC-C---HHHHHHHHHHHH
Confidence 35565332 45556 56888888 9999999954321 11 1111 1 23333344333
Q ss_pred ---------CCCccEEEecCCCCHHHHHHHHHhccC
Q psy5880 257 ---------KGKLPIIGVGGVFSGKDAFEKIKAGAS 283 (328)
Q Consensus 257 ---------~~~ipvia~GGI~s~~da~~~l~~GAd 283 (328)
+.+++|-++|||+|.+|+.+++++||+
T Consensus 214 ~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~aga~ 249 (281)
T 2a4a_A 214 EYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARR 249 (281)
T ss_dssp HHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred HhhcccccCCCCceEEEeCCCCCHHHHHHHHHHhhh
Confidence 557999999999999999999999987
No 192
>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}
Probab=97.90 E-value=7.7e-05 Score=71.70 Aligned_cols=125 Identities=12% Similarity=0.070 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+++++.++++.+ +++.+.+++++ +.+...+++++||++. + .+++|.++....++.++..++++.
T Consensus 187 e~~~~~a~~~~~~Gf~~vKik~g~----------~~~~d~e~v~avR~av---G--~d~~l~vDan~~~~~~eai~~~~~ 251 (428)
T 3bjs_A 187 ESLAEEAQEYIARGYKALKLRIGD----------AARVDIERVRHVRKVL---G--DEVDILTDANTAYTMADARRVLPV 251 (428)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCS----------CHHHHHHHHHHHHHHH---C--TTSEEEEECTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC----------CHHHHHHHHHHHHHhc---C--CCCEEEEECCCCCCHHHHHHHHHH
Confidence 566666666554 69999998774 2345677888888773 3 578999999888998899999999
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+ .+.|++.|- .| ..+..++..+++++.++ .+||++.+.+.+.+++.++++.|
T Consensus 252 L--~~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~-~iPIa~dE~~~~~~~~~~~i~~~ 303 (428)
T 3bjs_A 252 L--AEIQAGWLE-------EP------------------FACNDFASYREVAKITP-LVPIAAGENHYTRFEFGQMLDAG 303 (428)
T ss_dssp H--HHTTCSCEE-------CC------------------SCTTCHHHHHHHTTTCS-SSCEEECTTCCSHHHHHHHHTTC
T ss_pred H--HhcCCCEEE-------CC------------------CCccCHHHHHHHHHhCC-CCcEEcCCCcCCHHHHHHHHHhC
Confidence 9 889988762 11 11123566677777653 39999999999999999999987
Q ss_pred -cCeeeehhH
Q psy5880 282 -ASLVQIYTS 290 (328)
Q Consensus 282 -Ad~V~vg~a 290 (328)
+|+|++=-.
T Consensus 304 ~~d~v~ik~~ 313 (428)
T 3bjs_A 304 AVQVWQPDLS 313 (428)
T ss_dssp CEEEECCBTT
T ss_pred CCCEEEeCcc
Confidence 899987543
No 193
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=97.89 E-value=0.00027 Score=67.31 Aligned_cols=147 Identities=12% Similarity=-0.002 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCC------------cchh--hhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNT------------ANLR--KLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI 186 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~------------~g~~--~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl 186 (328)
.+++++.++++.+ ++..+-+.++++.. ++.. ..++.+...+++++||++ ++ .+++|+++.
T Consensus 134 ~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a---~G--~d~~l~vDa 208 (401)
T 3sbf_A 134 MEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREK---YG--NQFHILHDV 208 (401)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHH---HT--TSSEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHH---cC--CCCEEEEEC
Confidence 4555555555433 69999998876421 0100 111234566777777776 34 688999999
Q ss_pred CCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEec
Q psy5880 187 APDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVG 266 (328)
Q Consensus 187 ~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~G 266 (328)
...++.++..++++.+ .+.|+++|- .| + .+..++..+++++.++ +||++.+
T Consensus 209 n~~~~~~~A~~~~~~L--~~~~i~~iE-------qP-------------~-----~~~~~~~~~~l~~~~~--iPIa~dE 259 (401)
T 3sbf_A 209 HERLFPNQAIQFAKEV--EQYKPYFIE-------DI-------------L-----PPNQTEWLDNIRSQSS--VSLGLGE 259 (401)
T ss_dssp TTCSCHHHHHHHHHHH--GGGCCSCEE-------CS-------------S-----CTTCGGGHHHHHTTCC--CCEEECT
T ss_pred CCCCCHHHHHHHHHHH--HhcCCCEEE-------CC-------------C-----ChhHHHHHHHHHhhCC--CCEEeCC
Confidence 9999999999999999 888888773 11 1 1112345677888887 9999999
Q ss_pred CCCCHHHHHHHHHhc-cCeeeehhHHhhcCchHHHHHH
Q psy5880 267 GVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 267 GI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i~ 303 (328)
.+.+..++.++++.| +|.|++--.-. .|..-..++.
T Consensus 260 ~~~~~~~~~~~i~~~~~d~v~~k~~~~-GGit~~~kia 296 (401)
T 3sbf_A 260 LFNNPEEWKSLIANRRIDFIRCHVSQI-GGITPALKLG 296 (401)
T ss_dssp TCCSHHHHHHHHHTTCCSEECCCGGGG-TSHHHHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCEEecCcccc-CCHHHHHHHH
Confidence 999999999999987 99999876653 3444444443
No 194
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=97.89 E-value=0.00016 Score=63.61 Aligned_cols=128 Identities=15% Similarity=0.203 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
..|++.+..++ +|++.+|.-+|. ..+.++++.+++ .++-+.+=+.|..+.+. ++.+
T Consensus 70 ~~~i~~~~~aG--Ad~itvh~Ea~~----------~~~~~~i~~i~~--------~G~k~gv~lnp~tp~~~----~~~~ 125 (231)
T 3ctl_A 70 QDYIAQLARAG--ADFITLHPETIN----------GQAFRLIDEIRR--------HDMKVGLILNPETPVEA----MKYY 125 (231)
T ss_dssp GGTHHHHHHHT--CSEEEECGGGCT----------TTHHHHHHHHHH--------TTCEEEEEECTTCCGGG----GTTT
T ss_pred HHHHHHHHHcC--CCEEEECcccCC----------ccHHHHHHHHHH--------cCCeEEEEEECCCcHHH----HHHH
Confidence 44566666777 999998754311 013456666665 35666777777755322 2223
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC---CCccEEEecCCCCHHHHHHHHH
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK---GKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~---~~ipvia~GGI~s~~da~~~l~ 279 (328)
. .++|.|.+.+... |+.|....+..++.++++++..+ .+++|.+-|||+ .+.+.++++
T Consensus 126 --l-~~~D~VlvmsV~p---------------GfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~ 186 (231)
T 3ctl_A 126 --I-HKADKITVMTVDP---------------GFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMA 186 (231)
T ss_dssp --G-GGCSEEEEESSCT---------------TCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHH
T ss_pred --H-hcCCEEEEeeecc---------------CcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHH
Confidence 2 3688886543221 23343334566777888877652 248999999997 788999999
Q ss_pred hccCeeeeh-hHHhh
Q psy5880 280 AGASLVQIY-TSFVY 293 (328)
Q Consensus 280 ~GAd~V~vg-~a~l~ 293 (328)
+|||.+.+| |+++.
T Consensus 187 aGAd~~V~G~saif~ 201 (231)
T 3ctl_A 187 AGADVFIVGTSGLFN 201 (231)
T ss_dssp HTCCEEEECTTTTGG
T ss_pred cCCCEEEEccHHHhC
Confidence 999999999 99874
No 195
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=97.89 E-value=0.00048 Score=64.43 Aligned_cols=145 Identities=10% Similarity=0.084 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhc-ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFG-DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~-~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++. .++..+-++++++ ++.-.+.+++||++. + .+++|.++....++.++..++++
T Consensus 140 ~~~~~~~a~~~~~~G~~~~K~K~g~~----------~~~d~~~v~avR~a~---g--~~~~l~vDan~~~~~~~a~~~~~ 204 (354)
T 3jva_A 140 PNVMAQKAVEKVKLGFDTLKIKVGTG----------IEADIARVKAIREAV---G--FDIKLRLDANQAWTPKDAVKAIQ 204 (354)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCSC----------HHHHHHHHHHHHHHH---C--TTSEEEEECTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCC----------HHHHHHHHHHHHHHc---C--CCCeEEEECCCCCCHHHHHHHHH
Confidence 345555555443 3689999988742 133456777777763 4 67899999999999888899999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.+.+++.++++.
T Consensus 205 ~L--~~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~l~~ 255 (354)
T 3jva_A 205 AL--ADYQIELVE-------QP------------------VKRRDLEGLKYVTSQVN--TTIMADESCFDAQDALELVKK 255 (354)
T ss_dssp HT--TTSCEEEEE-------CC------------------SCTTCHHHHHHHHHHCS--SEEEESTTCCSHHHHHHHHHH
T ss_pred HH--HhcCCCEEE-------CC------------------CChhhHHHHHHHHHhCC--CCEEEcCCcCCHHHHHHHHHc
Confidence 99 888887773 11 11123566788888887 999999999999999999997
Q ss_pred c-cCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 281 G-ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 281 G-Ad~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
| +|.|++--.-. .|..-..++. .+.+.+|+
T Consensus 256 ~~~d~v~~k~~~~-GGit~~~~i~----~~A~~~gi 286 (354)
T 3jva_A 256 GTVDVINIKLMKC-GGIHEALKIN----QICETAGI 286 (354)
T ss_dssp TCCSEEEECHHHH-TSHHHHHHHH----HHHHHTTC
T ss_pred CCCCEEEECchhc-CCHHHHHHHH----HHHHHcCC
Confidence 7 89999876654 4554444443 33445554
No 196
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*
Probab=97.87 E-value=7e-05 Score=83.67 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=49.4
Q ss_pred cCCCCCC-cCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH-----------HhccCeeeehhHHhhc
Q psy5880 233 TGGLSGE-PLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI-----------KAGASLVQIYTSFVYH 294 (328)
Q Consensus 233 ~gg~sg~-~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l-----------~~GAd~V~vg~a~l~~ 294 (328)
.||+-|. ......+.++.++++.++ ||||+.|||.+++++..+| .+|||+|++||.||..
T Consensus 737 aGGH~g~~d~~~~~l~l~~~v~~~~~--ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t 808 (2051)
T 2uv8_G 737 GGGHHSFEDAHTPMLQMYSKIRRHPN--IMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIA 808 (2051)
T ss_dssp CSEECCSCCSSHHHHHHHHHHTTCTT--BCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTS
T ss_pred cCCCCCcccccccHHHHHHHHHhcCC--ceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHhC
Confidence 4666554 233445677888888887 9999999999999999999 8999999999999853
No 197
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
Probab=97.86 E-value=0.00037 Score=65.53 Aligned_cols=135 Identities=13% Similarity=0.019 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..+++++.++++.+ +++.+.++++. +.+...+++++||++ ++ .++||.++....++.++..+++
T Consensus 146 ~~~~~~~~a~~~~~~Gf~~iKik~g~----------~~~~~~e~v~avr~a---~g--~~~~l~vDan~~~~~~~a~~~~ 210 (371)
T 2ps2_A 146 EPEDMRARVAKYRAKGYKGQSVKISG----------EPVTDAKRITAALAN---QQ--PDEFFIVDANGKLSVETALRLL 210 (371)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEECCS----------CHHHHHHHHHHHTTT---CC--TTCEEEEECTTBCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChheEEeecCC----------CHHHHHHHHHHHHHh---cC--CCCEEEEECCCCcCHHHHHHHH
Confidence 35667777777665 79999998873 234556777777665 33 5789999998889988888888
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+. .+.|+ +|- .| + + .++..+++++.++ +||++.+.+++++++.++++
T Consensus 211 ~~l~-~~~~i-~iE-------~P-------------~------~-~~~~~~~l~~~~~--iPI~~dE~~~~~~~~~~~i~ 259 (371)
T 2ps2_A 211 RLLP-HGLDF-ALE-------AP-------------C------A-TWRECISLRRKTD--IPIIYDELATNEMSIVKILA 259 (371)
T ss_dssp HHSC-TTCCC-EEE-------CC-------------B------S-SHHHHHHHHTTCC--SCEEESTTCCSHHHHHHHHH
T ss_pred HHHH-hhcCC-cCc-------CC-------------c------C-CHHHHHHHHhhCC--CCEEeCCCcCCHHHHHHHHH
Confidence 8771 24566 441 11 1 1 3466788888886 99999999999999999999
Q ss_pred hc-cCeeeehhHHhhcCchHHHHH
Q psy5880 280 AG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 280 ~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
.| +|+|++--.-. .|..-..++
T Consensus 260 ~~~~d~v~ik~~~~-GGit~~~~i 282 (371)
T 2ps2_A 260 DDAAEGIDLKISKA-GGLTRGRRQ 282 (371)
T ss_dssp HTCCSEEEEEHHHH-TSHHHHHHH
T ss_pred hCCCCEEEechhhc-CCHHHHHHH
Confidence 87 89999876553 345444444
No 198
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=97.86 E-value=0.00017 Score=76.65 Aligned_cols=155 Identities=16% Similarity=0.185 Sum_probs=95.2
Q ss_pred CCcccccC--CCCcCChhhHHHHHHHhHHHHHHHhh-cCccceEEeccCCCCCcCccCC-----CchHHHHHHHHHHHHH
Q psy5880 19 SGEWGCTP--THNMLSSFARMRAWVLQFWLLGILKF-GDVAHYFVVNVSSPNTANLRKL-----QAKDQLKHLLKTVVET 90 (328)
Q Consensus 19 ~~~~g~~~--~~~~~~~~~~v~~~~l~~y~~~~~~l-~~~~~~v~~n~sspN~~gl~~~-----~~~~~L~~ll~~v~~~ 90 (328)
.+.+++|+ ++++ ++|.+.++.+ ...+|++++|++|||+++...+ ++++.+.++++++++.
T Consensus 634 ~~~~i~~i~~g~~~------------~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~ 701 (1025)
T 1gte_A 634 DNIVIASIMCSYNK------------NDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQA 701 (1025)
T ss_dssp TSEEEEEECCCSCH------------HHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCCH------------HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHh
Confidence 45677766 4433 3566666655 3458999999999999654443 5788889999998876
Q ss_pred hhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEE-ccC------------CCCCc--------
Q psy5880 91 RNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVV-NVS------------SPNTA-------- 149 (328)
Q Consensus 91 ~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~iei-N~s------------cPn~~-------- 149 (328)
. ..|+++|+.+++. .+.++++.+..++ +|+|.+ |.. -|...
T Consensus 702 ~-------~~Pv~vK~~~~~~---------~~~~~a~~~~~~G--~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~g 763 (1025)
T 1gte_A 702 V-------QIPFFAKLTPNVT---------DIVSIARAAKEGG--ADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYG 763 (1025)
T ss_dssp C-------SSCEEEEECSCSS---------CHHHHHHHHHHHT--CSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCE
T ss_pred h-------CCceEEEeCCChH---------HHHHHHHHHHHcC--CCEEEEeccccccccccccccccccccccccccCC
Confidence 3 3799999988753 4677888888877 999887 311 01100
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEec
Q psy5880 150 NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 150 g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
+...........+++..+++. + .++||+.= .++.. ..++.+.+ ++|+|+|.+..
T Consensus 764 g~sg~~~~~~~~~~v~~v~~~---~---~~ipvi~~--GGI~s--~~da~~~l---~~Ga~~v~vg~ 817 (1025)
T 1gte_A 764 GVSGTAIRPIALRAVTTIARA---L---PGFPILAT--GGIDS--AESGLQFL---HSGASVLQVCS 817 (1025)
T ss_dssp EEESGGGHHHHHHHHHHHHHH---S---TTCCEEEE--SSCCS--HHHHHHHH---HTTCSEEEESH
T ss_pred CCCcccchhHHHHHHHHHHHH---c---CCCCEEEe--cCcCC--HHHHHHHH---HcCCCEEEEee
Confidence 000000111223566666554 1 27898863 33321 44565656 48999997654
No 199
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=97.86 E-value=0.00016 Score=62.74 Aligned_cols=123 Identities=11% Similarity=0.059 Sum_probs=74.8
Q ss_pred HHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhcccc
Q psy5880 127 KGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSK 206 (328)
Q Consensus 127 ~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~ 206 (328)
+.+.+++ +|++.+|... + .+.+.++++.+++ .+.++++++...++.. -.+.+ .+
T Consensus 74 ~~~~~~G--ad~itvh~~~----g------~~~l~~~~~~~~~--------~g~~~~~~ll~~~t~~----~~~~l--~~ 127 (216)
T 1q6o_A 74 RMCFEAN--ADWVTVICCA----D------INTAKGALDVAKE--------FNGDVQIELTGYWTWE----QAQQW--RD 127 (216)
T ss_dssp HHHHHTT--CSEEEEETTS----C------HHHHHHHHHHHHH--------TTCEEEEEECSCCCHH----HHHHH--HH
T ss_pred HHHHhCC--CCEEEEeccC----C------HHHHHHHHHHHHH--------cCCCceeeeeeCCChh----hHHHH--Hh
Confidence 3455565 9999988763 1 1123344444443 3577788776233322 22344 45
Q ss_pred CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeee
Q psy5880 207 CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286 (328)
Q Consensus 207 ~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~ 286 (328)
.|.+.++++-..... ..|+.| +.+.++.+++..+.++||++.|||+ ++.+.+++++|||.+.
T Consensus 128 ~~~~~~vl~~a~~~~-----------~~G~~g------~~~~i~~lr~~~~~~~~i~v~GGI~-~~~~~~~~~aGad~iv 189 (216)
T 1q6o_A 128 AGIGQVVYHRSRDAQ-----------AAGVAW------GEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKGIPIHVFI 189 (216)
T ss_dssp TTCCEEEEECCHHHH-----------HTTCCC------CHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTSCCSEEE
T ss_pred cCcHHHHHHHHHHHH-----------hcCCCC------CHHHHHHHHHhcCCCCcEEEECCcC-hhhHHHHHHcCCCEEE
Confidence 576666554211110 022333 1344566666653358999999998 7889999999999999
Q ss_pred ehhHHhh
Q psy5880 287 IYTSFVY 293 (328)
Q Consensus 287 vg~a~l~ 293 (328)
+||++..
T Consensus 190 vG~~I~~ 196 (216)
T 1q6o_A 190 AGRSIRD 196 (216)
T ss_dssp ESHHHHT
T ss_pred EeehhcC
Confidence 9999974
No 200
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}
Probab=97.85 E-value=0.00016 Score=68.65 Aligned_cols=124 Identities=14% Similarity=0.116 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+++++.++++.+ ++..+.+++++ +++.-.+.+++||++ ++ .+++|.++....++.++..++++.
T Consensus 157 e~~~~~a~~~~~~G~~~iKlK~g~----------~~~~d~~~v~avR~a---~g--~~~~l~vDaN~~~~~~~A~~~~~~ 221 (392)
T 3ddm_A 157 ENPEDVVARKAAEGYRAFKLKVGF----------DDARDVRNALHVREL---LG--AATPLMADANQGWDLPRARQMAQR 221 (392)
T ss_dssp SSHHHHHHHHHHHTCCCEEEECSS----------CHHHHHHHHHHHHHH---HC--SSSCEEEECTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEecCC----------CHHHHHHHHHHHHHh---cC--CCceEEEeCCCCCCHHHHHHHHHH
Confidence 334444444433 58999998874 223456677777776 34 678999999999999899999999
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHH-HHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKS-TELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~-l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
+ .+.|+++|- .| ..+.. ++..+++++.++ +||++.+.+.+.+++.++++.
T Consensus 222 L--~~~~i~~iE-------eP------------------~~~~d~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~~ 272 (392)
T 3ddm_A 222 L--GPAQLDWLE-------EP------------------LRADRPAAEWAELAQAAP--MPLAGGENIAGVAAFETALAA 272 (392)
T ss_dssp H--GGGCCSEEE-------CC------------------SCTTSCHHHHHHHHHHCS--SCEEECTTCCSHHHHHHHHHH
T ss_pred H--HHhCCCEEE-------CC------------------CCccchHHHHHHHHHhcC--CCEEeCCCCCCHHHHHHHHHc
Confidence 9 888988873 11 11122 466778888887 999999999999999999997
Q ss_pred c-cCeeeehhH
Q psy5880 281 G-ASLVQIYTS 290 (328)
Q Consensus 281 G-Ad~V~vg~a 290 (328)
| +|.|++--.
T Consensus 273 ~a~d~v~~k~~ 283 (392)
T 3ddm_A 273 RSLRVMQPDLA 283 (392)
T ss_dssp TCEEEECCCTT
T ss_pred CCCCEEEeCcc
Confidence 7 899987543
No 201
>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*
Probab=97.85 E-value=0.00012 Score=68.87 Aligned_cols=122 Identities=14% Similarity=0.081 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..+++++.++++.. +++.+.++++ | +...+++++||++. + .++++.+.....++.++ .+++
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~vKik~~-~-----------~~~~e~v~avr~~~---g--~~~~l~vDan~~~~~~~-~~~~ 202 (368)
T 1sjd_A 141 TIPQLLDVVGGYLDEGYVRIKLKIE-P-----------GWDVEPVRAVRERF---G--DDVLLQVDANTAYTLGD-APQL 202 (368)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECB-T-----------TBSHHHHHHHHHHH---C--TTSEEEEECTTCCCGGG-HHHH
T ss_pred CHHHHHHHHHHHHHhCccEEEEecC-c-----------hhHHHHHHHHHHhc---C--CCceEEEeccCCCCHHH-HHHH
Confidence 34566666666654 6999999874 2 23457778888774 3 57899999888889889 9999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+.|+++|- .| +.+..++..+++++.++ +||++.+.+++++++.++++
T Consensus 203 ~~l--~~~~i~~iE-------~P------------------~~~~~~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~i~ 253 (368)
T 1sjd_A 203 ARL--DPFGLLLIE-------QP------------------LEEEDVLGHAELARRIQ--TPICLDESIVSARAAADAIK 253 (368)
T ss_dssp HTT--GGGCCSEEE-------CC------------------SCTTCHHHHHHHHTTCS--SCEEESTTCCSHHHHHHHHH
T ss_pred HHH--HhcCCCeEe-------CC------------------CChhhHHHHHHHHHhCC--CCEEECCCcCCHHHHHHHHH
Confidence 999 889988762 11 11223566778888876 99999999999999999999
Q ss_pred hc-cCeeeehh
Q psy5880 280 AG-ASLVQIYT 289 (328)
Q Consensus 280 ~G-Ad~V~vg~ 289 (328)
.| +|.|++=-
T Consensus 254 ~~~~d~v~ik~ 264 (368)
T 1sjd_A 254 LGAVQIVNIKP 264 (368)
T ss_dssp TTCCSEEEECT
T ss_pred cCCCCEEEecc
Confidence 88 89998743
No 202
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=97.85 E-value=9.3e-06 Score=71.36 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 246 TELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 246 l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
.++++++++.+. ++|++..|||+|++++.++.+ |||+|.|||++. ++|+.+.++.+.
T Consensus 174 ~~~v~~ir~~~~-~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~-~~~~~~~e~v~~ 230 (235)
T 3w01_A 174 VSKVQAVSEHLT-ETQLFYGGGISSEQQATEMAA-IADTIIVGDIIY-KDIKKALKTVKI 230 (235)
T ss_dssp HHHHHHHHTTCS-SSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHH-HCHHHHHHTTCC
T ss_pred HHHHHHHHHhcC-CCCEEEECCcCCHHHHHHHHc-CCCEEEECCcee-cCHHHHHHHHHH
Confidence 578999999872 399999999999999999887 999999999997 579888877543
No 203
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=97.84 E-value=2e-05 Score=69.73 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHc-CCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCch-HHHHH
Q psy5880 245 STELISEMYKLT-KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPP-LVTRI 302 (328)
Q Consensus 245 ~l~~v~~i~~~~-~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~-~~~~i 302 (328)
..++++++++.+ + +|++..|||+|++++.++++ |||.|.|||++. ++|+ +++++
T Consensus 169 ~~~~i~~i~~~~~~--~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v-~~~~~~~~~v 224 (240)
T 1viz_A 169 DIEAVKKTKAVLET--STLFYGGGIKDAETAKQYAE-HADVIVVGNAVY-EDFDRALKTV 224 (240)
T ss_dssp CHHHHHHHHHTCSS--SEEEEESSCCSHHHHHHHHT-TCSEEEECTHHH-HCHHHHHTHH
T ss_pred hHHHHHHHHHhcCC--CCEEEEeccCCHHHHHHHHh-CCCEEEEChHHH-hCHHHHHHHH
Confidence 368899999987 5 99999999999999999988 999999999997 5688 88774
No 204
>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A
Probab=97.84 E-value=0.00011 Score=70.57 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCc--------------------c---hhhhhhhHHHHHHHHHHHHHHHhhcCC
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTA--------------------N---LRKLQAKDQLKHLLKTVVETRNQLAVK 177 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~--------------------g---~~~~~~~~~~~~i~~~v~~~~~~~~~~ 177 (328)
.+++++.++++.+ ++..+-+.++.|... + ....++.+...+++++||++ ++
T Consensus 150 ~e~~~~~a~~~~~~Gf~~iKlKvG~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~avR~a---vG-- 224 (424)
T 3v3w_A 150 LDSTLEAVRKAKDKGYKAIRVQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIPDVFAAVRKE---FG-- 224 (424)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECCTTCSCCTTCC-----CCSCCBSSCCEEEECHHHHHHHHHHHHHHHHHH---HC--
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHH---cC--
Confidence 4555555555433 699999887754210 0 00011234556677777766 44
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.++||++.....++.++..++++.| .+.|+++|- .| + .+..++..+++++.++
T Consensus 225 ~d~~l~vDaN~~~~~~~A~~~~~~L--~~~~i~~iE-------qP-------------~-----~~~d~~~~~~l~~~~~ 277 (424)
T 3v3w_A 225 PDIHLLHDVHHRLTPIEAARLGKAL--EPYHLFWME-------DA-------------V-----PAENQESFKLIRQHTT 277 (424)
T ss_dssp SSSEEEEECTTCCCHHHHHHHHHHH--GGGCCSEEE-------CC-------------S-----CCSSTTHHHHHHHHCC
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHH--HhcCCCEEE-------CC-------------C-----ChHhHHHHHHHHhhCC
Confidence 6889999999999999999999999 889988873 11 1 0112345677888887
Q ss_pred CCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHH
Q psy5880 258 GKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSF 291 (328)
Q Consensus 258 ~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~ 291 (328)
+||++.+.+.+..++.++++.| +|.|++--.-
T Consensus 278 --iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~ 310 (424)
T 3v3w_A 278 --TPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVH 310 (424)
T ss_dssp --SCEEECTTCCSGGGTHHHHHTTCCSEECCCTTT
T ss_pred --CCEEEccCcCCHHHHHHHHHcCCCCeEeecchh
Confidence 9999999999999999999988 8999876554
No 205
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=97.82 E-value=5.7e-05 Score=67.07 Aligned_cols=88 Identities=20% Similarity=0.195 Sum_probs=63.6
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++++.+ .+.|+..|.+++-... |..+|+ .++.++.+++.++ ++|||++||+.+.+|
T Consensus 152 ~~~~~~~~~--~~~g~~eil~t~Id~D-------------Gt~~G~-----d~~l~~~l~~~~~-~ipviasGGv~~~~D 210 (243)
T 4gj1_A 152 KLMEVLDFY--SNKGLKHILCTDISKD-------------GTMQGV-----NVRLYKLIHEIFP-NICIQASGGVASLKD 210 (243)
T ss_dssp BHHHHHHHH--HTTTCCEEEEEETTC------------------CC-----CHHHHHHHHHHCT-TSEEEEESCCCSHHH
T ss_pred hHHHHHHHH--hhcCCcEEEeeeeccc-------------ccccCC-----CHHHHHHHHHhcC-CCCEEEEcCCCCHHH
Confidence 367888888 8999999987753222 335554 3578888888764 499999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~ 304 (328)
+.++ +.++++|.+|++++ .|---++++++
T Consensus 211 l~~l-~~~~~gvivg~Al~-~g~i~l~ea~~ 239 (243)
T 4gj1_A 211 LENL-KGICSGVIVGKALL-DGVFSVEEGIR 239 (243)
T ss_dssp HHHT-TTTCSEEEECHHHH-TTSSCHHHHHH
T ss_pred HHHH-HccCchhehHHHHH-CCCCCHHHHHH
Confidence 9875 67799999999996 44433455443
No 206
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=97.82 E-value=0.00043 Score=63.89 Aligned_cols=176 Identities=19% Similarity=0.164 Sum_probs=97.9
Q ss_pred HHHHHHHhcccccEEEEccCC-CCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe--CC-C----CChh---
Q psy5880 125 SVKGILKFGDVAHYFVVNVSS-PNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI--AP-D----LSLD--- 193 (328)
Q Consensus 125 ~~~~a~~~~~~~d~ieiN~sc-Pn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl--~~-~----~~~~--- 193 (328)
-++-+.+++ +|++-+.+.. |..+. +......+.+..|.+.+++ .++|+++=+ .+ . .+.+
T Consensus 115 sve~a~~~G--ADAVk~lv~~g~d~~~----e~~~~q~~~l~rv~~ec~~----~GiPlllEil~y~~~~~~~~~~~~a~ 184 (332)
T 3iv3_A 115 SIKRLKEAG--ADAVKFLLYYDVDGDP----QVNVQKQAYIERIGSECQA----EDIPFFLEILTYDETISNNSSVEFAK 184 (332)
T ss_dssp CHHHHHHTT--CSEEEEEEEECTTSCH----HHHHHHHHHHHHHHHHHHH----HTCCEEEEEEECBTTBSCTTSHHHHT
T ss_pred CHHHHHHcC--CCEEEEEEEcCCCchH----HHHHHHHHHHHHHHHHHHH----cCCceEEEEeccCCCCCCCcchhhhc
Confidence 355566666 9998876542 32211 0011233344444445444 579998854 12 1 1111
Q ss_pred ----hHHHHHHHhccccCCccEEEEecCCcc-chhhhccccccccCCC-CCCcCc--hHHHHHHHHHHHHcCCCccEE-E
Q psy5880 194 ----EKKDIADVVLDSKCKVDGLIVSNTTVD-RYEYLDARYKEETGGL-SGEPLR--NKSTELISEMYKLTKGKLPII-G 264 (328)
Q Consensus 194 ----~~~~~a~~l~~~~~G~d~i~~~n~~~~-~~~~~~~~~~~~~gg~-sg~~~~--~~~l~~v~~i~~~~~~~ipvi-a 264 (328)
-+...++.+-+.+.|+|.+-+--+... +. .|+ .|.... ....+..+++.+..+ +|+| .
T Consensus 185 ~~p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v-----------~g~~~~~~~y~~~ea~~~f~~~~~a~~--~P~v~l 251 (332)
T 3iv3_A 185 VKVHKVNDAMKVFSAERFGIDVLKVEVPVNMVYV-----------EGFAEGEVVYSKEEAAQAFREQEASTD--LPYIYL 251 (332)
T ss_dssp THHHHHHHHHHHHTSGGGCCSEEEECCSSCGGGB-----------TTTCSSCCCBCHHHHHHHHHHHHHTCS--SCEEEE
T ss_pred cCHHHHHHHHHHHhhcCcCCcEEEEecCCChhhh-----------cccccccccccHHHHHHHHHHHHhcCC--CCEEEE
Confidence 145555655112458998855322110 00 111 122222 223344556656666 9965 7
Q ss_pred ecCCCCHHHHHHHH----Hhcc--CeeeehhHHhhcCchHH-HHHHHHHHHHHHHhCCCCHHHHhcc
Q psy5880 265 VGGVFSGKDAFEKI----KAGA--SLVQIYTSFVYHGPPLV-TRIKSELEELLQKEGYNSVSQAVGA 324 (328)
Q Consensus 265 ~GGI~s~~da~~~l----~~GA--d~V~vg~a~l~~gp~~~-~~i~~~l~~~m~~~g~~si~e~~G~ 324 (328)
+||+ +.++..+.+ ++|| ..|.+||++..+....+ .+=.+..++||...|.++|++|--.
T Consensus 252 sgG~-~~~~fl~~v~~A~~aGa~f~Gv~~GRnvwq~~v~~~~~~~~~~~~~~l~~~g~~~i~~l~~v 317 (332)
T 3iv3_A 252 SAGV-SAELFQETLVFAHKAGAKFNGVLCGRATWAGSVQVYMEEGKEAARQWLRTSGLQNINELNKV 317 (332)
T ss_dssp CTTC-CHHHHHHHHHHHHHHTCCCCEEEECHHHHTTHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHHHHcCCCcceEEeeHHHHHhhhhhhccccHHHHHHHHHHHhHHHHHHHHHH
Confidence 9998 566666544 5899 99999999975433322 2224467899999999999888543
No 207
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=97.81 E-value=1.6e-05 Score=67.65 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCc
Q psy5880 247 ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGP 296 (328)
Q Consensus 247 ~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp 296 (328)
+.++++++.++ +|||+.|+|+|.+|+.+++++||++|..++.-+|+|-
T Consensus 140 ~iI~~i~~~~~--~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~~~ 187 (192)
T 3kts_A 140 EQVQKMTQKLH--IPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEGH 187 (192)
T ss_dssp HHHHHHHHHHC--CCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGGTTC
T ss_pred HHHHHHHHhcC--CCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhCcc
Confidence 57888999887 9999999999999999999999999999999999874
No 208
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Probab=97.81 E-value=0.00021 Score=61.71 Aligned_cols=120 Identities=18% Similarity=0.129 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC--C--hhhHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL--S--LDEKK 196 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~--~--~~~~~ 196 (328)
....+++.+.+++ +|.+.+|... +. +.++.+++. ..+++...++... + .+.+.
T Consensus 66 t~~~~v~~~~~~G--ad~vtvh~~~----g~----------~~i~~~~~~-------~gv~vl~~t~~~~~~~~~~~~v~ 122 (208)
T 2czd_A 66 TNRLIARKVFGAG--ADYVIVHTFV----GR----------DSVMAVKEL-------GEIIMVVEMSHPGALEFINPLTD 122 (208)
T ss_dssp HHHHHHHHHHHTT--CSEEEEESTT----CH----------HHHHHHHTT-------SEEEEECCCCSGGGGTTTGGGHH
T ss_pred HHHHHHHHHHhcC--CCEEEEeccC----CH----------HHHHHHHHh-------CCcEEEEecCCcchhhHHHHHHH
Confidence 4566777777776 9999988763 11 114444432 2334444432210 0 23456
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCC-HHHHH
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFS-GKDAF 275 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s-~~da~ 275 (328)
.++... .+.|++++.++.+.. +.++++++..+. -+++..|||+. +.++.
T Consensus 123 ~~~~~a--~~~G~~G~~~~~~~~---------------------------~~i~~lr~~~~~-~~~iv~gGI~~~g~~~~ 172 (208)
T 2czd_A 123 RFIEVA--NEIEPFGVIAPGTRP---------------------------ERIGYIRDRLKE-GIKILAPGIGAQGGKAK 172 (208)
T ss_dssp HHHHHH--HHHCCSEEECCCSST---------------------------HHHHHHHHHSCT-TCEEEECCCCSSTTHHH
T ss_pred HHHHHH--HHhCCcEEEECCCCh---------------------------HHHHHHHHhCCC-CeEEEECCCCCCCCCHH
Confidence 677777 889999997664321 345667777653 35779999986 44789
Q ss_pred HHHHhccCeeeehhHHhh
Q psy5880 276 EKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 276 ~~l~~GAd~V~vg~a~l~ 293 (328)
+++++|||.+.+||+++.
T Consensus 173 ~~~~aGad~vvvGr~I~~ 190 (208)
T 2czd_A 173 DAVKAGADYIIVGRAIYN 190 (208)
T ss_dssp HHHHHTCSEEEECHHHHT
T ss_pred HHHHcCCCEEEEChHHhc
Confidence 999999999999999975
No 209
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}
Probab=97.80 E-value=0.00038 Score=66.71 Aligned_cols=146 Identities=7% Similarity=-0.013 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCC------------cch--hhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNT------------ANL--RKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI 186 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~------------~g~--~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl 186 (328)
.+++++.++++.+ ++..+-+.++++.. ++. ...++.+...+++++||++ ++ .+++|+++.
T Consensus 155 ~e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~a---vG--~d~~L~vDa 229 (422)
T 3tji_A 155 LEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREK---YG--WKLHILHDV 229 (422)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHH---HC--SSSEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHH---cC--CCCEEEEEC
Confidence 4555555555433 69999998875321 110 0112234566677777766 44 689999999
Q ss_pred CCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEec
Q psy5880 187 APDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVG 266 (328)
Q Consensus 187 ~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~G 266 (328)
...++.++..++++.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+
T Consensus 230 N~~~~~~~A~~~~~~L--e~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~--iPIa~dE 280 (422)
T 3tji_A 230 HERLFPQQAVQLAKQL--EPFQPYFIE-------DI------------------LPPQQSAWLEQVRQQSC--VPLALGE 280 (422)
T ss_dssp TTCSCHHHHHHHHHHH--GGGCCSEEE-------CC------------------SCGGGGGGHHHHHHHCC--CCEEECT
T ss_pred CCCCCHHHHHHHHHHH--HhhCCCeEE-------CC------------------CChhhHHHHHHHHhhCC--CCEEEeC
Confidence 9999999999999999 888888773 11 11223455678888887 9999999
Q ss_pred CCCCHHHHHHHHHhc-cCeeeehhHHhhcCchHHHHH
Q psy5880 267 GVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 267 GI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
.+.+.+++.++++.| +|.|++--.-. .|..-..++
T Consensus 281 ~~~~~~~~~~ll~~ga~d~v~~k~~~~-GGit~~~ki 316 (422)
T 3tji_A 281 LFNNPAEWHDLIVNRRIDFIRCHVSQI-GGITPALKL 316 (422)
T ss_dssp TCCSGGGTHHHHHTTCCSEECCCGGGG-TSHHHHHHH
T ss_pred CcCCHHHHHHHHhcCCCCEEecCcccc-CCHHHHHHH
Confidence 999999999999987 99999876553 344444444
No 210
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.79 E-value=0.00011 Score=69.70 Aligned_cols=101 Identities=20% Similarity=0.284 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCC
Q psy5880 156 AKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG 235 (328)
Q Consensus 156 ~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg 235 (328)
+++...++++.+++ ..+|+++++++. ...+.++.+ .++|+|++.++..... ..
T Consensus 140 d~~~~~~~i~~~~~--------~g~~v~~~v~~~----~~~e~a~~~--~~agad~i~i~~~~~~-------------~~ 192 (393)
T 2qr6_A 140 DTELLSERIAQVRD--------SGEIVAVRVSPQ----NVREIAPIV--IKAGADLLVIQGTLIS-------------AE 192 (393)
T ss_dssp CHHHHHHHHHHHHH--------TTSCCEEEECTT----THHHHHHHH--HHTTCSEEEEECSSCC-------------SS
T ss_pred CHHHHHHHHHHHhh--------cCCeEEEEeCCc----cHHHHHHHH--HHCCCCEEEEeCCccc-------------cc
Confidence 34555666655544 368999999874 245667777 7899999987643210 11
Q ss_pred CCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehh
Q psy5880 236 LSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 236 ~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~ 289 (328)
+.++.. .+..+..+++.++ +||++ |||.|++++.+++++|||+|.+|+
T Consensus 193 ~~~~~~---~~~~i~~l~~~~~--~pvi~-ggi~t~e~a~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 193 HVNTGG---EALNLKEFIGSLD--VPVIA-GGVNDYTTALHMMRTGAVGIIVGG 240 (393)
T ss_dssp CCCC--------CHHHHHHHCS--SCEEE-ECCCSHHHHHHHHTTTCSEEEESC
T ss_pred cCCCcc---cHHHHHHHHHhcC--CCEEE-CCcCCHHHHHHHHHcCCCEEEECC
Confidence 112111 2334677777776 99999 999999999999999999999976
No 211
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}
Probab=97.79 E-value=0.00059 Score=64.75 Aligned_cols=140 Identities=13% Similarity=-0.000 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhcc-cccEEEEc-cCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC-ChhhHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL-SLDEKKD 197 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN-~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~-~~~~~~~ 197 (328)
.++++++.++++.. ++..+-++ ++.+ ..+++.-.+++++||++. + .++||.++....+ +.++..+
T Consensus 152 ~i~~~~~~a~~~~~~G~~~~K~~k~g~~-------~~~~~~d~~~v~avR~a~---G--~d~~l~vDan~~~~~~~~A~~ 219 (394)
T 3mqt_A 152 IVEAYKPLIAKAKERGAKAVKVCIIPND-------KVSDKEIVAYLRELREVI---G--WDMDMMVDCLYRWTDWQKARW 219 (394)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCT-------TSCHHHHHHHHHHHHHHH---C--SSSEEEEECTTCCSCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCEEEecccCCC-------ccCHHHHHHHHHHHHHHh---C--CCCeEEEECCCCCCCHHHHHH
Confidence 34456666655543 68888874 3311 012345567778887764 4 6889999999999 8888899
Q ss_pred HHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHH
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~ 277 (328)
+++.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.++.++.++
T Consensus 220 ~~~~L--~~~~i~~iE-------eP------------------~~~~~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~ 270 (394)
T 3mqt_A 220 TFRQL--EDIDLYFIE-------AC------------------LQHDDLIGHQKLAAAIN--TRLCGAEMSTTRFEAQEW 270 (394)
T ss_dssp HHHHT--GGGCCSEEE-------SC------------------SCTTCHHHHHHHHHHSS--SEEEECTTCCHHHHHHHH
T ss_pred HHHHH--hhcCCeEEE-------CC------------------CCcccHHHHHHHHhhCC--CCEEeCCCcCCHHHHHHH
Confidence 99999 889988873 11 11123566788888887 999999999999999999
Q ss_pred HHhc-cCeeeehhHHhhcCchHHHHH
Q psy5880 278 IKAG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 278 l~~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
++.| +|.|++--.-. .|..-..++
T Consensus 271 l~~~~~d~v~~k~~~~-GGit~~~~i 295 (394)
T 3mqt_A 271 LEKTGISVVQSDYNRC-GGVTELLRI 295 (394)
T ss_dssp HHHHCCSEECCCTTTS-SCHHHHHHH
T ss_pred HHcCCCCeEecCcccc-CCHHHHHHH
Confidence 9987 99999865543 344444444
No 212
>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A
Probab=97.79 E-value=0.0001 Score=70.70 Aligned_cols=136 Identities=11% Similarity=0.030 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCc--------------------c---hhhhhhhHHHHHHHHHHHHHHHhhcCC
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTA--------------------N---LRKLQAKDQLKHLLKTVVETRNQLAVK 177 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~--------------------g---~~~~~~~~~~~~i~~~v~~~~~~~~~~ 177 (328)
.+++++.++++.+ ++..+-+.++.|... + ....++.+...+++++||++. +
T Consensus 151 ~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~avR~a~---G-- 225 (425)
T 3vcn_A 151 IEDTIAEAVKYKAMGYKAIRLQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVPKLFERAREVL---G-- 225 (425)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECCTTCSCCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTHHHHHHHHHHH---C--
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecCccccccccccccccccCcccccccccccccchhHHHHHHHHHHHHHHHc---C--
Confidence 4555555555433 699999887753210 0 000011234567777777763 4
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.++||++.....++.++..++++.| .+.|+++|- .| + .+..++..+++++.++
T Consensus 226 ~d~~l~vDaN~~~~~~~A~~~~~~L--~~~~i~~iE-------qP-------------~-----~~~d~~~~~~l~~~~~ 278 (425)
T 3vcn_A 226 WDVHLLHDVHHRLTPIEAARLGKDL--EPYRLFWLE-------DS-------------V-----PAENQAGFRLIRQHTT 278 (425)
T ss_dssp SSSEEEEECTTCCCHHHHHHHHHHH--GGGCCSEEE-------CC-------------S-----CCSSTTHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH--HhcCCCEEE-------CC-------------C-----ChhhHHHHHHHHhcCC
Confidence 6889999999999999999999999 889988873 11 1 0112345677888887
Q ss_pred CCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHH
Q psy5880 258 GKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSF 291 (328)
Q Consensus 258 ~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~ 291 (328)
+||++.+.+.+++++.++++.| +|.|++--.-
T Consensus 279 --iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~ 311 (425)
T 3vcn_A 279 --TPLAVGEIFAHVWDAKQLIEEQLIDYLRATVLH 311 (425)
T ss_dssp --SCEEECTTCCSGGGTHHHHHTTCCSEECCCTTT
T ss_pred --CCEEeCCCcCCHHHHHHHHHcCCCCeEecChhh
Confidence 9999999999999999999988 9999876544
No 213
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=97.78 E-value=0.0016 Score=58.32 Aligned_cols=159 Identities=15% Similarity=0.140 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCC-Ccc-hhh-h-hhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPN-TAN-LRK-L-QAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKK 196 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn-~~g-~~~-~-~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~ 196 (328)
....|.+.++.++ +.++ +|++.-- .+| .|. + +.+-.+.+.++.|+++++. ++-- +..-.+.++
T Consensus 109 ~~g~~Le~lk~~G--f~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~-----gL~T---i~~v~~~ee-- 175 (286)
T 2p10_A 109 VMSTFLRELKEIG--FAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKL-----DLLT---TPYVFSPED-- 175 (286)
T ss_dssp CHHHHHHHHHHHT--CCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHT-----TCEE---CCEECSHHH--
T ss_pred CHHHHHHHHHHhC--CceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHC-----CCeE---EEecCCHHH--
Confidence 4667778888888 9999 8885211 011 121 1 2333466777777777542 2211 111123322
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCC--c-CchHHHHHHHHHH---HHcCCCccEEEec-CCC
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGE--P-LRNKSTELISEMY---KLTKGKLPIIGVG-GVF 269 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~--~-~~~~~l~~v~~i~---~~~~~~ipvia~G-GI~ 269 (328)
++++ .++|+|.|.++-+... ||+-|. + ......+.+.++. +.++.++.|+.-| ||.
T Consensus 176 --A~am--A~agpDiI~~h~glT~-------------gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIs 238 (286)
T 2p10_A 176 --AVAM--AKAGADILVCHMGLTT-------------GGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIA 238 (286)
T ss_dssp --HHHH--HHHTCSEEEEECSCC----------------------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCC
T ss_pred --HHHH--HHcCCCEEEECCCCCC-------------CCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCC
Confidence 4455 6889999988754211 222221 1 1111123333332 2344456666554 999
Q ss_pred CHHHHHHHHHh--ccCeeeehhHHhhcCchHHHHHHHHHHHHHHH
Q psy5880 270 SGKDAFEKIKA--GASLVQIYTSFVYHGPPLVTRIKSELEELLQK 312 (328)
Q Consensus 270 s~~da~~~l~~--GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~ 312 (328)
+++|+..+++. |++.+..+|++..- | +++...++..-++.
T Consensus 239 tpeDv~~~l~~t~G~~G~~gASsier~-p--~e~ai~~~~~~fk~ 280 (286)
T 2p10_A 239 NPEDARFILDSCQGCHGFYGASSMERL-P--AEEAIRSQTLAFKA 280 (286)
T ss_dssp SHHHHHHHHHHCTTCCEEEESHHHHHH-H--HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCccEEEeehhhhcC-C--HHHHHHHHHHHHHh
Confidence 99999999998 99999999999743 5 44554444444443
No 214
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=97.75 E-value=0.0004 Score=60.99 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.+-++.+..++ ++++. +|+.. .++++..++ .++|++.=+. + ..++.++
T Consensus 96 ~~~a~~Ai~AG--A~fIv----sP~~~-----------~~vi~~~~~--------~gi~~ipGv~---T---ptEi~~A- 143 (232)
T 4e38_A 96 GEQALAAKEAG--ATFVV----SPGFN-----------PNTVRACQE--------IGIDIVPGVN---N---PSTVEAA- 143 (232)
T ss_dssp HHHHHHHHHHT--CSEEE----CSSCC-----------HHHHHHHHH--------HTCEEECEEC---S---HHHHHHH-
T ss_pred HHHHHHHHHcC--CCEEE----eCCCC-----------HHHHHHHHH--------cCCCEEcCCC---C---HHHHHHH-
Confidence 44455566666 88886 56641 244444443 2677765433 3 3455444
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhcc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGA 282 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GA 282 (328)
.++|+|+|-++-.. ..| +.++++.++..++ ++|++++|||+ ++.+.+++++||
T Consensus 144 --~~~Gad~vK~FPa~-----------------~~g------G~~~lkal~~p~p-~ip~~ptGGI~-~~n~~~~l~aGa 196 (232)
T 4e38_A 144 --LEMGLTTLKFFPAE-----------------ASG------GISMVKSLVGPYG-DIRLMPTGGIT-PSNIDNYLAIPQ 196 (232)
T ss_dssp --HHTTCCEEEECSTT-----------------TTT------HHHHHHHHHTTCT-TCEEEEBSSCC-TTTHHHHHTSTT
T ss_pred --HHcCCCEEEECcCc-----------------ccc------CHHHHHHHHHHhc-CCCeeeEcCCC-HHHHHHHHHCCC
Confidence 58999999664211 110 3578899988774 59999999995 899999999999
Q ss_pred CeeeehhHHh
Q psy5880 283 SLVQIYTSFV 292 (328)
Q Consensus 283 d~V~vg~a~l 292 (328)
.++.+|+.+.
T Consensus 197 ~~~vgGs~l~ 206 (232)
T 4e38_A 197 VLACGGTWMV 206 (232)
T ss_dssp BCCEEECGGG
T ss_pred eEEEECchhc
Confidence 9999898874
No 215
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=97.75 E-value=0.00038 Score=61.42 Aligned_cols=131 Identities=9% Similarity=-0.017 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCC---------CCCEEEEeCCCCCh
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKP---------LPPILVKIAPDLSL 192 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~---------~~Pv~vKl~~~~~~ 192 (328)
...|++.+..++ +|++.+|...... +.++++.+++ . ++-+.+=+.|..+.
T Consensus 81 p~~~i~~~~~aG--Ad~itvH~ea~~~-----------~~~~i~~i~~--------~~~~~~~~~~g~~~gv~l~p~Tp~ 139 (237)
T 3cu2_A 81 QLEVAKAVVANG--ANLVTLQLEQYHD-----------FALTIEWLAK--------QKTTYANQVYPVLIGACLCPETPI 139 (237)
T ss_dssp HHHHHHHHHHTT--CSEEEEETTCTTS-----------HHHHHHHHTT--------CEEEETTEEEECEEEEEECTTSCG
T ss_pred HHHHHHHHHHcC--CCEEEEecCCccc-----------HHHHHHHHHh--------cccccccccCCceEEEEEeCCChH
Confidence 467888888887 9999988763211 3344444432 2 34466667665443
Q ss_pred hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC---CccEEEecCCC
Q psy5880 193 DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG---KLPIIGVGGVF 269 (328)
Q Consensus 193 ~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~---~ipvia~GGI~ 269 (328)
+. ++.+ ..++|.|.+-+.. .|+.|....+..++.++++++..+. +++|.+-|||+
T Consensus 140 ~~----l~~~---l~~~D~vlvMsv~---------------pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~ 197 (237)
T 3cu2_A 140 SE----LEPY---LDQIDVIQLLTLD---------------PRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMT 197 (237)
T ss_dssp GG----GTTT---TTTCSEEEEESEE---------------TTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC
T ss_pred HH----HHHH---hhcCceeeeeeec---------------cCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcC
Confidence 22 2222 2468987553211 1223333345678888888887632 48999999997
Q ss_pred CHHHHHHHHH--hccCeeeehhHHhhcCc
Q psy5880 270 SGKDAFEKIK--AGASLVQIYTSFVYHGP 296 (328)
Q Consensus 270 s~~da~~~l~--~GAd~V~vg~a~l~~gp 296 (328)
.+.+.++.+ +|||.+.+||+++..+|
T Consensus 198 -~~~~~~~~~~~aGad~~VvGSaIf~~d~ 225 (237)
T 3cu2_A 198 -LELAKYFKQGTHQIDWLVSGSALFSGEL 225 (237)
T ss_dssp -HHHHHHHHHSSSCCCCEEECGGGGSSCH
T ss_pred -HHHHHHHHHhCCCCcEEEEeeHHhCCCH
Confidence 899999999 99999999999974333
No 216
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Probab=97.73 E-value=0.00046 Score=65.52 Aligned_cols=130 Identities=12% Similarity=-0.001 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhcc-cccEEEEc-cCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC-ChhhHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVN-VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL-SLDEKKD 197 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN-~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~-~~~~~~~ 197 (328)
.++++++.++++.. ++..+-++ ++.+. .+.+.-.+++++||++. + .+++|.++....+ +.++..+
T Consensus 157 ~~~~~~~~a~~~~~~G~~~~K~~k~g~~~-------~~~~~d~e~v~avR~a~---G--~d~~l~vDaN~~~~~~~~A~~ 224 (394)
T 3mkc_A 157 AIKGYAPLLEKAKAHNIRAVKVCVPIKAD-------WSTKEVAYYLRELRGIL---G--HDTDMMVDYLYRFTDWYEVAR 224 (394)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCTTCC-------CCHHHHHHHHHHHHHHH---C--SSSEEEEECTTCCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCEEEeCccCCCc-------cCHHHHHHHHHHHHHHh---C--CCCeEEEeCCCCCCCHHHHHH
Confidence 34456666655543 68888873 33110 12345567777887764 4 6889999999889 8888899
Q ss_pred HHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHH
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~ 277 (328)
+++.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.+++++.++
T Consensus 225 ~~~~L--~~~~i~~iE-------eP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~ 275 (394)
T 3mkc_A 225 LLNSI--EDLELYFAE-------AT------------------LQHDDLSGHAKLVENTR--SRICGAEMSTTRFEAEEW 275 (394)
T ss_dssp HHHHT--GGGCCSEEE-------SC------------------SCTTCHHHHHHHHHHCS--SCBEECTTCCHHHHHHHH
T ss_pred HHHHh--hhcCCeEEE-------CC------------------CCchhHHHHHHHHhhCC--CCEEeCCCCCCHHHHHHH
Confidence 99999 889988873 11 11123466788888887 999999999999999999
Q ss_pred HHhc-cCeeeehhHH
Q psy5880 278 IKAG-ASLVQIYTSF 291 (328)
Q Consensus 278 l~~G-Ad~V~vg~a~ 291 (328)
++.| +|.|++--.-
T Consensus 276 l~~~~~d~v~~k~~~ 290 (394)
T 3mkc_A 276 ITKGKVHLLQSDYNR 290 (394)
T ss_dssp HHTTCCSEECCCTTT
T ss_pred HHcCCCCeEecCccc
Confidence 9987 9999986544
No 217
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=97.73 E-value=2.1e-05 Score=70.55 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=68.0
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
++.++|+.+ .+.|++.+++.. +++ .+++.++++.+.++ +||...|||++. +
T Consensus 39 dp~~~A~~~--~~~Ga~~l~vvD-------------------L~~-----~n~~~i~~i~~~~~--~pv~vgGGir~~-~ 89 (260)
T 2agk_A 39 PSSYYAKLY--KDRDVQGCHVIK-------------------LGP-----NNDDAAREALQESP--QFLQVGGGINDT-N 89 (260)
T ss_dssp CHHHHHHHH--HHTTCTTCEEEE-------------------ESS-----SCHHHHHHHHHHST--TTSEEESSCCTT-T
T ss_pred CHHHHHHHH--HHcCCCEEEEEe-------------------CCC-----CCHHHHHHHHhcCC--ceEEEeCCCCHH-H
Confidence 478899999 899999998753 111 12577888888887 999999999987 9
Q ss_pred HHHHHHhccCeeeehhHHhhcC-----chHHHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHG-----PPLVTRIKSEL 306 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~g-----p~~~~~i~~~l 306 (328)
+.+++ +||+-|.+||+++ ++ |++++++.+..
T Consensus 90 ~~~~l-~Ga~~Viigs~a~-~~~g~~~p~~~~~~~~~~ 125 (260)
T 2agk_A 90 CLEWL-KWASKVIVTSWLF-TKEGHFQLKRLERLTELC 125 (260)
T ss_dssp HHHHT-TTCSCEEECGGGB-CTTCCBCHHHHHHHHHHH
T ss_pred HHHHh-cCCCEEEECcHHH-hhcCCCCHHHHHHHHHHh
Confidence 99999 9999999999997 67 98888887654
No 218
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=97.70 E-value=0.00096 Score=61.06 Aligned_cols=130 Identities=15% Similarity=0.063 Sum_probs=76.8
Q ss_pred HHHHHHHHhcccccEEEEccCC-CCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC-C--C----Ch-hh
Q psy5880 124 DSVKGILKFGDVAHYFVVNVSS-PNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP-D--L----SL-DE 194 (328)
Q Consensus 124 ~~~~~a~~~~~~~d~ieiN~sc-Pn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~-~--~----~~-~~ 194 (328)
..++.+.+++ +|++.+.+.. +..+ .....+.+..+.+.+++ .++|+++=+-+ + + +. +.
T Consensus 112 ~~ve~a~~~G--AdaV~vlv~~~~d~~-------~~~~~~~i~~v~~~~~~----~G~p~lv~~~~~g~~v~~~~~~~~~ 178 (304)
T 1to3_A 112 INAQAVKRDG--AKALKLLVLWRSDED-------AQQRLNMVKEFNELCHS----NGLLSIIEPVVRPPRCGDKFDREQA 178 (304)
T ss_dssp CCHHHHHHTT--CCEEEEEEEECTTSC-------HHHHHHHHHHHHHHHHT----TTCEEEEEEEECCCSSCSCCCHHHH
T ss_pred hhHHHHHHcC--CCEEEEEEEcCCCcc-------HHHHHHHHHHHHHHHHH----cCCcEEEEEECCCCccccCCChhHH
Confidence 4455566666 8998854321 1110 12233334444444333 67998887632 1 2 22 33
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHH----cCCCcc-EEEecCCC
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKL----TKGKLP-IIGVGGVF 269 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~----~~~~ip-via~GGI~ 269 (328)
+...++.+ .+.|+|.+-+.-+... .| + .+.+.++.+. ++ +| |+..||+
T Consensus 179 v~~aa~~a--~~lGaD~iKv~~~~~~------------~g---~-------~~~~~~vv~~~~~~~~--~P~Vv~aGG~- 231 (304)
T 1to3_A 179 IIDAAKEL--GDSGADLYKVEMPLYG------------KG---A-------RSDLLTASQRLNGHIN--MPWVILSSGV- 231 (304)
T ss_dssp HHHHHHHH--TTSSCSEEEECCGGGG------------CS---C-------HHHHHHHHHHHHHTCC--SCEEECCTTS-
T ss_pred HHHHHHHH--HHcCCCEEEeCCCcCC------------CC---C-------HHHHHHHHHhccccCC--CCeEEEecCC-
Confidence 55667888 8999998865542211 01 1 1223333333 55 99 9999999
Q ss_pred CHH----HHHHHHHhccCeeeehhHHhh
Q psy5880 270 SGK----DAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 270 s~~----da~~~l~~GAd~V~vg~a~l~ 293 (328)
+.+ .+..++.+||+.|.+||+++.
T Consensus 232 ~~~~~~~~~~~a~~aGa~Gv~vGRaI~q 259 (304)
T 1to3_A 232 DEKLFPRAVRVAMEAGASGFLAGRAVWS 259 (304)
T ss_dssp CTTTHHHHHHHHHHTTCCEEEESHHHHG
T ss_pred CHHHHHHHHHHHHHcCCeEEEEehHHhC
Confidence 553 477788899999999999974
No 219
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=97.69 E-value=0.00037 Score=66.12 Aligned_cols=133 Identities=11% Similarity=0.118 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
.++++++.++++.. +++.+.++++.... .....++.+...+++++||++. + .+++|.+.....++.++..+++
T Consensus 148 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~~-~~~~~~~~~~~~e~v~avR~~~---g--~d~~l~vDan~~~~~~~ai~~~ 221 (392)
T 3p3b_A 148 AVALMQEEAMQGYAKGQRHFKIKVGRGGR-HMPLWEGTKRDIAIVRGISEVA---G--PAGKIMIDANNAYNLNLTKEVL 221 (392)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEECCHHHH-TSCHHHHHHHHHHHHHHHHHHH---C--TTCCEEEECTTCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCEEEECcCcCcc-cCCccccHHHHHHHHHHHHHHh---C--CCCeEEEECCCCCCHHHHHHHH
Confidence 34677777776654 79999998652100 0001123355667777777763 4 5799999998889988889999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHH-----cCCCccEEEecCCCCHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKL-----TKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~-----~~~~ipvia~GGI~s~~da 274 (328)
+.+ .+.|+++|- .| +. ..++..+++++. ++ +||++.+ +.+++++
T Consensus 222 ~~l--~~~~i~~iE-------~P-------------~~------~d~~~~~~l~~~l~~~g~~--iPIa~dE-~~~~~~~ 270 (392)
T 3p3b_A 222 AAL--SDVNLYWLE-------EA-------------FH------EDEALYEDLKEWLGQRGQN--VLIADGE-GLASPHL 270 (392)
T ss_dssp HHT--TTSCEEEEE-------CS-------------SS------CCHHHHHHHHHHHHHHTCC--CEEEECC-SSCCTTH
T ss_pred HHH--HhcCCCEEe-------cC-------------Cc------ccHHHHHHHHHhhccCCCC--ccEEecC-CCCHHHH
Confidence 999 888877652 11 11 124556777777 66 9999999 9999999
Q ss_pred HHHHHhc-cCeeeehhH
Q psy5880 275 FEKIKAG-ASLVQIYTS 290 (328)
Q Consensus 275 ~~~l~~G-Ad~V~vg~a 290 (328)
.++++.| +|+|++=-.
T Consensus 271 ~~~i~~~~~d~v~ik~~ 287 (392)
T 3p3b_A 271 IEWATRGRVDVLQYDII 287 (392)
T ss_dssp HHHHHTTSCCEECCBTT
T ss_pred HHHHHcCCCCEEEeCcc
Confidence 9999988 899987433
No 220
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=97.69 E-value=0.00023 Score=62.07 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=73.2
Q ss_pred HHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccc
Q psy5880 126 VKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDS 205 (328)
Q Consensus 126 ~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~ 205 (328)
++.+..++ +|++.+.-+ + |... .+.+.+.++..++. ++.+++=+.+.. + .+.+ .
T Consensus 75 ~~~~~~~G--ad~Vll~~s----e--r~l~-~~e~~~~~~~a~~~--------Gl~~iv~v~~~~------e-~~~~--~ 128 (219)
T 2h6r_A 75 AEAIKDCG--CKGTLINHS----E--KRML-LADIEAVINKCKNL--------GLETIVCTNNIN------T-SKAV--A 128 (219)
T ss_dssp HHHHHHHT--CCEEEESBT----T--BCCB-HHHHHHHHHHHHHH--------TCEEEEEESSSH------H-HHHH--T
T ss_pred HHHHHHcC--CCEEEECCc----c--ccCC-HHHHHHHHHHHHHC--------CCeEEEEeCCch------H-HHHH--H
Confidence 35566666 999987333 1 1111 12245555554443 566666665521 2 2445 5
Q ss_pred cCCccEEEEecCCccchhhhccccccccCCCCC---CcCchH-HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 206 KCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG---EPLRNK-STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 206 ~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg---~~~~~~-~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+.|.+.|-+.++... | +| ....+. .....+.+++.. .++||++.|||++++++..+...|
T Consensus 129 ~~~~~~i~~~~~~~i--------------G-tG~~~~t~~~~~~~~~~~~ir~~~-~~~~ii~ggGI~~~~~~~~~~~~g 192 (219)
T 2h6r_A 129 ALSPDCIAVEPPELI--------------G-TGIPVSKANPEVVEGTVRAVKEIN-KDVKVLCGAGISKGEDVKAALDLG 192 (219)
T ss_dssp TTCCSEEEECCCC-----------------------------CSHHHHHHHHHHC-TTCEEEECSSCCSHHHHHHHHTTT
T ss_pred hCCCCEEEEEecccc--------------c-cCCCCccCCHHHHHHHHHHHHhcc-CCCeEEEEeCcCcHHHHHHHhhCC
Confidence 667776655553320 1 11 000111 113334444443 259999999999999999999999
Q ss_pred cCeeeehhHHhh
Q psy5880 282 ASLVQIYTSFVY 293 (328)
Q Consensus 282 Ad~V~vg~a~l~ 293 (328)
||+|.||++++.
T Consensus 193 aDgvlVGsAi~~ 204 (219)
T 2h6r_A 193 AEGVLLASGVVK 204 (219)
T ss_dssp CCCEEESHHHHT
T ss_pred CCEEEEcHHHhC
Confidence 999999999984
No 221
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=97.66 E-value=0.0011 Score=62.43 Aligned_cols=113 Identities=13% Similarity=0.047 Sum_probs=87.0
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
++..+-+.+++|. ++.-.+.+++||++ ++ .+++|.++....++.++..++++.+ .+.|+++|-
T Consensus 167 G~~~~K~Kvg~~~---------~~~d~~~v~avR~~---~g--~~~~l~vDan~~~~~~~a~~~~~~l--~~~~i~~iE- 229 (372)
T 3tj4_A 167 GFTRLKIKVGHDD---------PNIDIARLTAVRER---VD--SAVRIAIDGNGKWDLPTCQRFCAAA--KDLDIYWFE- 229 (372)
T ss_dssp CCCEEEEECCCSS---------HHHHHHHHHHHHHH---SC--TTCEEEEECTTCCCHHHHHHHHHHT--TTSCEEEEE-
T ss_pred CCCEEEEcCCCCC---------HHHHHHHHHHHHHH---cC--CCCcEEeeCCCCCCHHHHHHHHHHH--hhcCCCEEE-
Confidence 5899999888643 22345677777776 34 5789999999999988888999999 888877762
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhH
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTS 290 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a 290 (328)
.| ..+..++..+++++.++ +||++...+.+..++.++++.| +|.|++=-.
T Consensus 230 ------qP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~ 280 (372)
T 3tj4_A 230 ------EP------------------LWYDDVTSHARLARNTS--IPIALGEQLYTVDAFRSFIDAGAVAYVQPDVT 280 (372)
T ss_dssp ------SC------------------SCTTCHHHHHHHHHHCS--SCEEECTTCCSHHHHHHHHHTTCCSEECCCTT
T ss_pred ------CC------------------CCchhHHHHHHHHhhcC--CCEEeCCCccCHHHHHHHHHcCCCCEEEeCcc
Confidence 11 11223566788888887 9999999999999999999987 899987543
No 222
>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*
Probab=97.65 E-value=0.0015 Score=61.88 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEE-EEeCCCCChhhHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPIL-VKIAPDLSLDEKKDI 198 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~-vKl~~~~~~~~~~~~ 198 (328)
..+++++.++++.+ ++..+-+++++ +++.-.+.+++||++. + .+++|+ +.....++.++..++
T Consensus 142 ~~e~~~~~a~~~~~~G~~~~KiKvG~----------~~~~d~~~v~avR~a~---g--~~~~l~~vDan~~~~~~~A~~~ 206 (391)
T 3gd6_A 142 EVESNLDVVRQKLEQGFDVFRLYVGK----------NLDADEEFLSRVKEEF---G--SRVRIKSYDFSHLLNWKDAHRA 206 (391)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSS----------CHHHHHHHHHHHHHHH---G--GGCEEEEEECTTCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeCC----------CHHHHHHHHHHHHHHc---C--CCCcEEEecCCCCcCHHHHHHH
Confidence 34566666655543 69999998875 1234467777777764 3 578999 999888999899999
Q ss_pred HHHhccccCCc--cEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHH
Q psy5880 199 ADVVLDSKCKV--DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFE 276 (328)
Q Consensus 199 a~~l~~~~~G~--d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~ 276 (328)
++.+ .+.|+ ++|- .| ..+..++..+++++.++ +|| ...+.+.+++.+
T Consensus 207 ~~~l--~~~~i~~~~iE-------qP------------------~~~~d~~~~~~l~~~~~--iPI--dE~~~~~~~~~~ 255 (391)
T 3gd6_A 207 IKRL--TKYDLGLEMIE-------SP------------------APRNDFDGLYQLRLKTD--YPI--SEHVWSFKQQQE 255 (391)
T ss_dssp HHHH--TTCCSSCCEEE-------CC------------------SCTTCHHHHHHHHHHCS--SCE--EEECCCHHHHHH
T ss_pred HHHH--HhcCCCcceec-------CC------------------CChhhHHHHHHHHHHcC--CCc--CCCCCCHHHHHH
Confidence 9999 88988 7662 11 11123566788888887 999 888999999999
Q ss_pred HHHhc-cCeeeehhHHhhcCchHHHHH
Q psy5880 277 KIKAG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 277 ~l~~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
+++.| +|.|++-..-. .|..-..++
T Consensus 256 ~~~~~~~d~v~~k~~~~-GGit~~~~i 281 (391)
T 3gd6_A 256 MIKKDAIDIFNISPVFI-GGLTSAKKA 281 (391)
T ss_dssp HHHHTCCSEEEECHHHH-TSHHHHHHH
T ss_pred HHHcCCCCEEEECchhc-CCHHHHHHH
Confidence 99987 89999887664 455444444
No 223
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=97.64 E-value=0.0015 Score=61.70 Aligned_cols=124 Identities=11% Similarity=0.150 Sum_probs=92.7
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
++..+-+.++++. ++.-.+.+++||++ ++ .+++|.++....++.++..++++.+ .+.|+++|-
T Consensus 164 G~~~~K~Kvg~~~---------~~~d~~~v~avR~a---~g--~~~~l~vDan~~~~~~~A~~~~~~l--~~~~i~~iE- 226 (383)
T 3i4k_A 164 GNRSFKLKMGAGD---------PAEDTRRVAELARE---VG--DRVSLRIDINARWDRRTALHYLPIL--AEAGVELFE- 226 (383)
T ss_dssp CCSEEEEECCSSC---------HHHHHHHHHHHHHT---TT--TTSEEEEECTTCSCHHHHHHHHHHH--HHTTCCEEE-
T ss_pred CCcEEEEeeCCCC---------HHHHHHHHHHHHHH---cC--CCCEEEEECCCCCCHHHHHHHHHHH--HhcCCCEEE-
Confidence 5889998887532 23345667777766 33 5789999999999998999999999 889988873
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhh
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVY 293 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~ 293 (328)
.| ..+..++..+++++.++ +||++.+.+.+.+++.++++.| +|.|++--.-.
T Consensus 227 ------qP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~- 279 (383)
T 3i4k_A 227 ------QP------------------TPADDLETLREITRRTN--VSVMADESVWTPAEALAVVKAQAADVIALKTTKH- 279 (383)
T ss_dssp ------SC------------------SCTTCHHHHHHHHHHHC--CEEEESTTCSSHHHHHHHHHHTCCSEEEECTTTT-
T ss_pred ------CC------------------CChhhHHHHHHHHhhCC--CCEEecCccCCHHHHHHHHHcCCCCEEEEccccc-
Confidence 11 11223566778888887 9999999999999999999987 89999876543
Q ss_pred cCchHHHHH
Q psy5880 294 HGPPLVTRI 302 (328)
Q Consensus 294 ~gp~~~~~i 302 (328)
.|..-..++
T Consensus 280 GGit~~~~i 288 (383)
T 3i4k_A 280 GGLLESKKI 288 (383)
T ss_dssp TSHHHHHHH
T ss_pred CCHHHHHHH
Confidence 344444444
No 224
>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A*
Probab=97.61 E-value=0.001 Score=63.45 Aligned_cols=133 Identities=10% Similarity=0.046 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCC-------cchh---------hhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEE
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNT-------ANLR---------KLQAKDQLKHLLKTVVETRNQLAVKPLPPILV 184 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~-------~g~~---------~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~v 184 (328)
.+++++.++++.+ ++..+-+.+..+.. +|.. .....++..+++++||++ ++ .++||.+
T Consensus 144 ~e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~avR~a---vG--~d~~l~v 218 (409)
T 3go2_A 144 LDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNLRAHLEALRDG---AG--PDVEILL 218 (409)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHHHH---HC--TTSEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccccccccccccCCCccCCcccccchHHHHHHHHHHHHHHHH---hC--CCCEEEE
Confidence 4455555555433 69999887732211 0110 001124556677777766 44 6899999
Q ss_pred EeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEE
Q psy5880 185 KIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIG 264 (328)
Q Consensus 185 Kl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia 264 (328)
+....++.++..++++.| .+.|+++|-. | . ..++..+++++.++ +||++
T Consensus 219 DaN~~~~~~~A~~~~~~L--~~~~i~~iE~-------P-----------------~---~d~~~~~~l~~~~~--iPIa~ 267 (409)
T 3go2_A 219 DLNFNAKPEGYLKILREL--ADFDLFWVEI-------D-----------------S---YSPQGLAYVRNHSP--HPISS 267 (409)
T ss_dssp ECTTCSCHHHHHHHHHHT--TTSCCSEEEC-------C-----------------C---SCHHHHHHHHHTCS--SCEEE
T ss_pred ECCCCCCHHHHHHHHHHH--hhcCCeEEEe-------C-----------------c---CCHHHHHHHHhhCC--CCEEe
Confidence 999999998899999999 8999988851 1 0 02456788888887 99999
Q ss_pred ecCCCCHHHHHHHHHhc-cCeeeehhH
Q psy5880 265 VGGVFSGKDAFEKIKAG-ASLVQIYTS 290 (328)
Q Consensus 265 ~GGI~s~~da~~~l~~G-Ad~V~vg~a 290 (328)
.+.+.+.+++.++++.| +|+|++=-.
T Consensus 268 dE~~~~~~~~~~~i~~~~~d~v~~k~~ 294 (409)
T 3go2_A 268 CETLFGIREFKPFFDANAVDVAIVDTI 294 (409)
T ss_dssp CTTCCHHHHHHHHHHTTCCSEEEECHH
T ss_pred CCCcCCHHHHHHHHHhCCCCEEEeCCC
Confidence 99999999999999988 899987654
No 225
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=97.61 E-value=0.00069 Score=59.27 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh-ccCeeeehhHHh
Q psy5880 245 STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA-GASLVQIYTSFV 292 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~-GAd~V~vg~a~l 292 (328)
++++++.+++.++ ++|+++.||| +++.+.+++++ |+++|. ++++.
T Consensus 144 G~~~lk~l~~~~~-~ipvvaiGGI-~~~N~~~~l~agga~~v~-gS~i~ 189 (224)
T 1vhc_A 144 GVKMIKALLGPYA-QLQIMPTGGI-GLHNIRDYLAIPNIVACG-GSWFV 189 (224)
T ss_dssp HHHHHHHHHTTTT-TCEEEEBSSC-CTTTHHHHHTSTTBCCEE-ECGGG
T ss_pred CHHHHHHHHhhCC-CCeEEEECCc-CHHHHHHHHhcCCCEEEE-Echhc
Confidence 4788899988874 4999999999 56899999998 899999 88886
No 226
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.57 E-value=5.2e-05 Score=65.67 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhh
Q psy5880 245 STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~ 293 (328)
+++.++.+++.+..++||++.|||+ ++.+.+++++||++|.++|+++.
T Consensus 130 g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gVav~s~i~~ 177 (210)
T 3ceu_A 130 TAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGAVVLGDLWN 177 (210)
T ss_dssp CHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEEEESHHHHT
T ss_pred CHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEEEEhHHhHc
Confidence 3566777777631139999999998 99999999999999999999973
No 227
>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A
Probab=97.57 E-value=0.00072 Score=63.23 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.+ ++..+-+++++ +++.-.+.+++||++. + .+++|.++....++.++..++++
T Consensus 141 ~~~~~~~a~~~~~~G~~~~K~K~G~----------~~~~d~~~v~avR~~~---g--~~~~l~vDan~~~~~~~a~~~~~ 205 (356)
T 3ro6_B 141 VEETLAEAREHLALGFRVLKVKLCG----------DEEQDFERLRRLHETL---A--GRAVVRVDPNQSYDRDGLLRLDR 205 (356)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCS----------CHHHHHHHHHHHHHHH---T--TSSEEEEECTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCC----------CHHHHHHHHHHHHHHh---C--CCCEEEEeCCCCCCHHHHHHHHH
Confidence 3445555544432 68999998875 1234456777777763 4 57899999999999888889999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.+.+|+.++++.
T Consensus 206 ~l--~~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~~~~ 256 (356)
T 3ro6_B 206 LV--QELGIEFIE-------QP------------------FPAGRTDWLRALPKAIR--RRIAADESLLGPADAFALAAP 256 (356)
T ss_dssp HH--HHTTCCCEE-------CC------------------SCTTCHHHHHTSCHHHH--HTEEESTTCCSHHHHHHHHSS
T ss_pred HH--HhcCCCEEE-------CC------------------CCCCcHHHHHHHHhcCC--CCEEeCCcCCCHHHHHHHHhc
Confidence 99 888888772 11 11123456677777776 999999999999999999986
Q ss_pred c--cCeeeehhHHhhcCchHHHHH
Q psy5880 281 G--ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 281 G--Ad~V~vg~a~l~~gp~~~~~i 302 (328)
| +|.|++--.-. .|..-..++
T Consensus 257 ~~~~d~v~~k~~~~-GGit~~~~i 279 (356)
T 3ro6_B 257 PAACGIFNIKLMKC-GGLAPARRI 279 (356)
T ss_dssp SCSCSEEEECHHHH-CSHHHHHHH
T ss_pred CCcCCEEEEccccc-CCHHHHHHH
Confidence 5 99999876654 344434444
No 228
>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A*
Probab=97.56 E-value=0.0023 Score=61.56 Aligned_cols=110 Identities=12% Similarity=0.058 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCC
Q psy5880 158 DQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLS 237 (328)
Q Consensus 158 ~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~s 237 (328)
+...+.+++||++ ++ .+++|+++....++.++..++++.+ .+.|+.+|- .|
T Consensus 224 ~~d~~~v~avR~a---~G--~d~~L~vDaN~~~~~~~A~~~~~~L--~~~~i~~iE-------eP--------------- 274 (440)
T 3t6c_A 224 KSIPRLFDHLRNK---LG--FSVELLHDAHERITPINAIHMAKAL--EPYQLFFLE-------DP--------------- 274 (440)
T ss_dssp HHHHHHHHHHHHH---HC--SSSEEEEECTTCSCHHHHHHHHHHT--GGGCCSEEE-------CS---------------
T ss_pred HHHHHHHHHHHHh---cC--CCCeEEEECCCCCCHHHHHHHHHHh--hhcCCCEEE-------CC---------------
Confidence 3455666666666 44 6889999999999998999999999 888888773 11
Q ss_pred CCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhhcCchHHHHH
Q psy5880 238 GEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 238 g~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
..+..++..+++++.++ +||++...+.+..++.++++.| +|.|++--.-. .|..-..++
T Consensus 275 ---~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~-GGit~~~~i 334 (440)
T 3t6c_A 275 ---VAPENTEWLKMLRQQSS--TPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSI-GGITPAKKI 334 (440)
T ss_dssp ---SCGGGGGGHHHHHHHCC--SCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGG-TSHHHHHHH
T ss_pred ---CChhhHHHHHHHHhhcC--CCEEeCcccCCHHHHHHHHHcCCccceeechhhh-CCHHHHHHH
Confidence 11223455677888887 9999999999999999999987 89999876553 344444444
No 229
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Probab=97.54 E-value=0.0016 Score=61.16 Aligned_cols=145 Identities=10% Similarity=0.082 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhc-ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFG-DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~-~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++. .++..+-+.+++ +++.-.+.+++||++. + .+++|.++....++.++..++++
T Consensus 141 ~e~~~~~a~~~~~~G~~~~K~KvG~----------~~~~d~~~v~avR~~~---g--~~~~l~vDaN~~~~~~~A~~~~~ 205 (368)
T 3q45_A 141 PHKMAADAVQIKKNGFEIIKVKVGG----------SKELDVERIRMIREAA---G--DSITLRIDANQGWSVETAIETLT 205 (368)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCS----------CHHHHHHHHHHHHHHH---C--SSSEEEEECTTCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecC----------CHHHHHHHHHHHHHHh---C--CCCeEEEECCCCCChHHHHHHHH
Confidence 344555554443 368999888763 1233456777777763 4 67899999988899888889999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.+..++.++++.
T Consensus 206 ~l--~~~~i~~iE-------qP------------------~~~~~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~~~~ 256 (368)
T 3q45_A 206 LL--EPYNIQHCE-------EP------------------VSRNLYTALPKIRQACR--IPIMADESCCNSFDAERLIQI 256 (368)
T ss_dssp HH--GGGCCSCEE-------CC------------------BCGGGGGGHHHHHHTCS--SCEEESTTCCSHHHHHHHHHT
T ss_pred HH--hhcCCCEEE-------CC------------------CChhHHHHHHHHHhhCC--CCEEEcCCcCCHHHHHHHHHc
Confidence 99 888888773 11 11223455677888877 999999999999999999997
Q ss_pred c-cCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 281 G-ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 281 G-Ad~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
| +|.|++--... .|..-..++ ..+.+.+|+
T Consensus 257 ~~~d~v~~k~~~~-GGit~~~~i----~~~A~~~gi 287 (368)
T 3q45_A 257 QACDSFNLKLSKS-AGITNALNI----IRLAEQAHM 287 (368)
T ss_dssp TCCSEEEECTTTT-TSHHHHHHH----HHHHHHTTC
T ss_pred CCCCeEEechhhc-CCHHHHHHH----HHHHHHcCC
Confidence 7 89999876543 344434444 334455555
No 230
>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A
Probab=97.52 E-value=0.00056 Score=64.35 Aligned_cols=120 Identities=12% Similarity=0.087 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.. +++.+.++++ | +...+.+++||++. .+++|.+.....++.++ .++++
T Consensus 149 ~~~~~~~a~~~~~~G~~~iKik~~-~-----------~~d~~~v~avr~a~------~~~~l~vDan~~~~~~~-~~~~~ 209 (375)
T 1r0m_A 149 EQATVDLVRRHVEQGYRRIKLKIK-P-----------GWDVQPVRATREAF------PDIRLTVDANSAYTLAD-AGRLR 209 (375)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEECB-T-----------TBSHHHHHHHHHHC------TTSCEEEECTTCCCGGG-HHHHH
T ss_pred HHHHHHHHHHHHHhcccEEEEecC-h-----------HHHHHHHHHHHHHc------CCCeEEEeCCCCCCHHH-HHHHH
Confidence 4556666665543 6999998873 2 22346678887762 47899999888888888 99999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.|+++|- .| + .+..++..+++++.++ +||++.+.+.+.+++.++++.
T Consensus 210 ~l--~~~~i~~iE-------qP-------------~-----~~~d~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~i~~ 260 (375)
T 1r0m_A 210 QL--DEYDLTYIE-------QP-------------L-----AWDDLVDHAELARRIR--TPLCLDESVASASDARKALAL 260 (375)
T ss_dssp TT--GGGCCSCEE-------CC-------------S-----CTTCSHHHHHHHHHCS--SCEEESTTCCSHHHHHHHHHH
T ss_pred HH--HhCCCcEEE-------CC-------------C-----CcccHHHHHHHHHhCC--CCEEecCccCCHHHHHHHHHh
Confidence 99 888888773 11 1 1122355677888887 999999999999999999998
Q ss_pred c-cCeeeehh
Q psy5880 281 G-ASLVQIYT 289 (328)
Q Consensus 281 G-Ad~V~vg~ 289 (328)
| +|.|++=-
T Consensus 261 ~~~d~v~ik~ 270 (375)
T 1r0m_A 261 GAGGVINLKV 270 (375)
T ss_dssp TSCSEEEECT
T ss_pred CCCCEEEECc
Confidence 8 89999843
No 231
>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*
Probab=97.52 E-value=0.0015 Score=58.77 Aligned_cols=93 Identities=14% Similarity=0.042 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeC---CCCChhh-HHHHHHHhccccCCccEEEEecCCccchhhhcccccc
Q psy5880 156 AKDQLKHLLKTVVETRNQLAVKPLPPILVKIA---PDLSLDE-KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKE 231 (328)
Q Consensus 156 ~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~---~~~~~~~-~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~ 231 (328)
+.+.+.+-+++|++++ . +..+|+- ..++.++ +...++.+ .++|+|+|-.+.+ +.
T Consensus 133 ~~~~V~~eI~~v~~a~------~--~~~lKVIlEt~~Lt~~e~i~~A~~ia--~~AGADFVKTSTG-f~----------- 190 (297)
T 4eiv_A 133 GESRIRLLVSEVKKVV------G--PKTLKVVLSGGELQGGDIISRAAVAA--LEGGADFLQTSSG-LG----------- 190 (297)
T ss_dssp HHHHHHHHHHHHHHHH------T--TSEEEEECCSSCCCCHHHHHHHHHHH--HHHTCSEEECCCS-SS-----------
T ss_pred cHHHHHHHHHHHHHHh------c--CCceEEEEecccCCcHHHHHHHHHHH--HHhCCCEEEcCCC-CC-----------
Confidence 3455666666777764 2 3466653 3466555 56788888 8999999954432 21
Q ss_pred ccCCCCCCcCchHHHHHHHHHHHHc----------------------CCCccEEEe-cCCCCHHHHHHHHH
Q psy5880 232 ETGGLSGEPLRNKSTELISEMYKLT----------------------KGKLPIIGV-GGVFSGKDAFEKIK 279 (328)
Q Consensus 232 ~~gg~sg~~~~~~~l~~v~~i~~~~----------------------~~~ipvia~-GGI~s~~da~~~l~ 279 (328)
.+ | -. ++.++.+++.+ ++++.|-++ |||+|.+|+.+++.
T Consensus 191 -~~---g--AT---~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e~A~~~i~ 252 (297)
T 4eiv_A 191 -AT---H--AT---MFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLMQ 252 (297)
T ss_dssp -SC---C--CC---HHHHHHHHHHHHHHHCC------------------CCEEEEECTTCCHHHHHHHHHH
T ss_pred -CC---C--CC---HHHHHHHHHHHHHHhccccccccccccccccccCCceeEEecCCCCCCHHHHHHHHH
Confidence 01 1 12 23333333332 356999999 99999999999998
No 232
>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}
Probab=97.51 E-value=0.0034 Score=59.05 Aligned_cols=146 Identities=10% Similarity=0.070 Sum_probs=101.5
Q ss_pred HHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+++++.++++.+ ++..+-+.+++.. .+.-.+.+++||++. + .+++|.++....++.++..++++.
T Consensus 148 ~~~~~~a~~~~~~G~~~~K~Kvg~~~---------~~~d~~~v~avR~~~---g--~~~~l~vDan~~~~~~~A~~~~~~ 213 (377)
T 3my9_A 148 DADLERMRAMVPAGHTVFKMKTGVKP---------HAEELRILETMRGEF---G--ERIDLRLDFNQALTPFGAMKILRD 213 (377)
T ss_dssp HHHHHHHHHHTTTTCCEEEEECSSSC---------HHHHHHHHHHHHHHH---G--GGSEEEEECTTCCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEccCCCc---------HHHHHHHHHHHHHHh---C--CCCeEEEeCCCCcCHHHHHHHHHH
Confidence 444444544433 7889988877421 223456777777764 3 578999999988988888899999
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+ .+.|+++|- .| ..+..++..+++++.++ +||++.+.+.+..++.++++.|
T Consensus 214 l--~~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~i~~~ 264 (377)
T 3my9_A 214 V--DAFRPTFIE-------QP------------------VPRRHLDAMAGFAAALD--TPILADESCFDAVDLMEVVRRQ 264 (377)
T ss_dssp H--HTTCCSCEE-------CC------------------SCTTCHHHHHHHHHHCS--SCEEESTTCSSHHHHHHHHHHT
T ss_pred H--hhcCCCEEE-------CC------------------CCccCHHHHHHHHHhCC--CCEEECCccCCHHHHHHHHHcC
Confidence 9 888888772 11 11223566788888887 9999999999999999999977
Q ss_pred -cCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCC
Q psy5880 282 -ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYN 316 (328)
Q Consensus 282 -Ad~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~ 316 (328)
+|.|++--.-. .|..-..++ ..+.+.+|+.
T Consensus 265 ~~d~v~~k~~~~-GGit~~~~i----~~~a~~~gi~ 295 (377)
T 3my9_A 265 AADAISVKIMKC-GGLMKAQSL----MAIADTAGLP 295 (377)
T ss_dssp CCSEEECCHHHH-TSHHHHHHH----HHHHHHHTCC
T ss_pred CCCEEEeccccc-CCHHHHHHH----HHHHHHcCCe
Confidence 99999866553 344434443 2334455553
No 233
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=97.51 E-value=0.00016 Score=63.55 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=43.2
Q ss_pred HHHHHHHHHHc-CCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCch
Q psy5880 246 TELISEMYKLT-KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPP 297 (328)
Q Consensus 246 l~~v~~i~~~~-~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~ 297 (328)
.++++++++.+ + +|++..|||+|++++.++++ |||.|.+||++..+ |+
T Consensus 178 ~~~i~~i~~~~~~--~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa~v~~-~~ 226 (234)
T 2f6u_A 178 PELVAEVKKVLDK--ARLFYGGGIDSREKAREMLR-YADTIIVGNVIYEK-GI 226 (234)
T ss_dssp HHHHHHHHHHCSS--SEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHHH-CH
T ss_pred HHHHHHHHHhCCC--CCEEEEecCCCHHHHHHHHh-CCCEEEEChHHHhC-HH
Confidence 58899999988 6 99999999999999999998 99999999999743 54
No 234
>3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A
Probab=97.49 E-value=0.0051 Score=58.18 Aligned_cols=131 Identities=8% Similarity=-0.001 Sum_probs=95.6
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
++..+-+.++.+... ....+++...+.+++||++. + .+++|.++....++.++..++++.+ .+.|+.+|-
T Consensus 162 Gf~~~K~KvG~~~~~--d~~~~~~~~~~~v~avReav---G--~d~~l~vDaN~~~~~~~A~~~~~~l--~~~~i~~iE- 231 (388)
T 3tcs_A 162 GFTAFKVRAGAEVGR--NRDEWPGRTEEIIPTMRREL---G--DDVDLLIDANSCYTPDRAIEVGHML--QDHGFCHFE- 231 (388)
T ss_dssp CCCEEEEECSCTTCT--TCCSSTTHHHHHHHHHHHHH---C--SSSEEEEECTTCCCHHHHHHHHHHH--HHTTCCEEE-
T ss_pred CCCEEEEccCCCccc--ccccchhHHHHHHHHHHHHh---C--CCCeEEEeCCCCcCHHHHHHHHHHH--hhcCCeEEE-
Confidence 599999988865321 11122445567778887763 4 6889999999999998889999999 888887762
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhh
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVY 293 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~ 293 (328)
.| ..+..++..+++++.++ +||.+...+.+..++.++++.| +|.|++--.-.
T Consensus 232 ------eP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~- 284 (388)
T 3tcs_A 232 ------EP------------------CPYWELAQTKQVTDALD--IDVTGGEQDCDLPTWQRMIDMRAVDIVQPDILYL- 284 (388)
T ss_dssp ------CC------------------SCTTCHHHHHHHHHHCS--SCEEECTTCCCHHHHHHHHHHTCCSEECCCHHHH-
T ss_pred ------CC------------------CCccCHHHHHHHHHhcC--CCEEcCCccCCHHHHHHHHHcCCCCEEEeCcccc-
Confidence 11 11223566788888887 9999999999999999999987 89999876553
Q ss_pred cCchHHHHH
Q psy5880 294 HGPPLVTRI 302 (328)
Q Consensus 294 ~gp~~~~~i 302 (328)
.|..-..++
T Consensus 285 GGit~a~ki 293 (388)
T 3tcs_A 285 GGICRTLRV 293 (388)
T ss_dssp TSHHHHHHH
T ss_pred CCHHHHHHH
Confidence 344444444
No 235
>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp}
Probab=97.49 E-value=0.00041 Score=66.56 Aligned_cols=100 Identities=13% Similarity=0.009 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCC
Q psy5880 158 DQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLS 237 (328)
Q Consensus 158 ~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~s 237 (328)
++..+++++||++. + .+++|++.....++.++..++++.+ .+.|+++|- .| +
T Consensus 212 ~~~~e~v~avR~a~---G--~d~~L~vDaN~~~~~~~A~~~~~~L--~~~~i~~iE-------eP-------------~- 263 (426)
T 4e4f_A 212 DFTPKLFEAVRDKF---G--FNEHLLHDMHHRLTPIEAARFGKSV--EDYRLFWME-------DP-------------T- 263 (426)
T ss_dssp HHHHHHHHHHHHHH---T--TSSEEEEECTTCSCHHHHHHHHHHT--GGGCCSEEE-------CC-------------S-
T ss_pred HHHHHHHHHHHHHh---C--CCCEEEEECCCCCCHHHHHHHHHHH--hhcCCCEEE-------CC-------------C-
Confidence 34567777777764 4 6899999999999999999999999 889988873 11 1
Q ss_pred CCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHH
Q psy5880 238 GEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSF 291 (328)
Q Consensus 238 g~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~ 291 (328)
.+..++..+++++.++ +||++.+.+.+..++.++++.| +|.|++--.-
T Consensus 264 ----~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~ 312 (426)
T 4e4f_A 264 ----PAENQACFRLIRQHTV--TPIAVGEVFNSIWDCKQLIEEQLIDYIRTTITH 312 (426)
T ss_dssp ----CCSSGGGGHHHHTTCC--SCEEECTTCCSGGGTHHHHHTTCCSEECCCTTT
T ss_pred ----ChHHHHHHHHHHhcCC--CCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccc
Confidence 1112344577888887 9999999999999999999988 8999876543
No 236
>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus}
Probab=97.49 E-value=0.00073 Score=63.42 Aligned_cols=142 Identities=15% Similarity=0.140 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.. +++.+.++++ | +...+.+++||++. .++++.+.....++.++ .++++
T Consensus 142 ~~~~~~~a~~~~~~G~~~iKik~~-~-----------~~d~~~v~avr~a~------~~~~l~vDan~~~~~~~-~~~~~ 202 (369)
T 2zc8_A 142 VEDTLRVVERHLEEGYRRIKLKIK-P-----------GWDYEVLKAVREAF------PEATLTADANSAYSLAN-LAQLK 202 (369)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEECB-T-----------TBSHHHHHHHHHHC------TTSCEEEECTTCCCGGG-HHHHH
T ss_pred HHHHHHHHHHHHHhhhheeeeecC-h-----------hHHHHHHHHHHHHc------CCCeEEEecCCCCCHHH-HHHHH
Confidence 4556666665543 6899998873 2 22346678887762 37899999988888888 99999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.|+++|- .| + .+..++..+++++.++ +||++...+.+..++.++++.
T Consensus 203 ~l--~~~~i~~iE-------qP-------------~-----~~~d~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~i~~ 253 (369)
T 2zc8_A 203 RL--DELRLDYIE-------QP-------------L-----AYDDLLDHAKLQRELS--TPICLDESLTGAEKARKAIEL 253 (369)
T ss_dssp GG--GGGCCSCEE-------CC-------------S-----CTTCSHHHHHHHHHCS--SCEEESTTCCSHHHHHHHHHH
T ss_pred HH--HhCCCcEEE-------CC-------------C-----CcccHHHHHHHHhhCC--CCEEEcCccCCHHHHHHHHHh
Confidence 99 888888773 11 1 1122355677888877 999999999999999999998
Q ss_pred c-cCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCC
Q psy5880 281 G-ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYN 316 (328)
Q Consensus 281 G-Ad~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~ 316 (328)
| +|.|++=-.-. .|..-..++ ..+.+.+|+.
T Consensus 254 ~~~d~v~ik~~~~-GGit~~~~i----~~~A~~~g~~ 285 (369)
T 2zc8_A 254 GAGRVFNVKPARL-GGHGESLRV----HALAESAGIP 285 (369)
T ss_dssp TCCSEEEECHHHH-TSHHHHHHH----HHHHHHTTCC
T ss_pred CCCCEEEEchhhh-CCHHHHHHH----HHHHHHcCCc
Confidence 8 89999844332 333323333 3344555654
No 237
>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*
Probab=97.46 E-value=0.0026 Score=60.06 Aligned_cols=127 Identities=9% Similarity=0.036 Sum_probs=92.4
Q ss_pred HHHHHHHHHHh-cc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 122 VLDSVKGILKF-GD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 122 i~~~~~~a~~~-~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
.+++++.++++ .. ++..+-+.++.+. ++.-.+.+++||++. + .+++|.+.....++.++..+++
T Consensus 168 ~e~~~~~a~~~~~~~G~~~~KlKvG~~~---------~~~d~~~v~avR~a~---G--~~~~l~vDaN~~~~~~~A~~~~ 233 (383)
T 3toy_A 168 ARDDERTLRTACDEHGFRAIKSKGGHGD---------LATDEAMIKGLRALL---G--PDIALMLDFNQSLDPAEATRRI 233 (383)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEEECCSSC---------HHHHHHHHHHHHHHH---C--TTSEEEEECTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCcEEEEecCCCC---------HHHHHHHHHHHHHHh---C--CCCeEEEeCCCCCCHHHHHHHH
Confidence 34444444443 23 4888888877432 233456677777763 4 6789999999999998888999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+.|+++|- .| ..+..++..+++++.++ +||++...+.+..++.++++
T Consensus 234 ~~l--~~~~i~~iE-------eP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~ 284 (383)
T 3toy_A 234 ARL--ADYDLTWIE-------EP------------------VPQENLSGHAAVRERSE--IPIQAGENWWFPRGFAEAIA 284 (383)
T ss_dssp HHH--GGGCCSEEE-------CC------------------SCTTCHHHHHHHHHHCS--SCEEECTTCCHHHHHHHHHH
T ss_pred HHH--HhhCCCEEE-------CC------------------CCcchHHHHHHHHhhcC--CCEEeCCCcCCHHHHHHHHH
Confidence 999 888888772 11 11223466788888887 99999999999999999999
Q ss_pred hc-cCeeeehhHH
Q psy5880 280 AG-ASLVQIYTSF 291 (328)
Q Consensus 280 ~G-Ad~V~vg~a~ 291 (328)
.| +|.|++--.-
T Consensus 285 ~~a~d~v~ik~~~ 297 (383)
T 3toy_A 285 AGASDFIMPDLMK 297 (383)
T ss_dssp HTCCSEECCCTTT
T ss_pred cCCCCEEEeCccc
Confidence 88 8999876443
No 238
>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}
Probab=97.44 E-value=0.0067 Score=57.35 Aligned_cols=128 Identities=8% Similarity=0.029 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHh-cc---cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHH
Q psy5880 121 VVLDSVKGILKF-GD---VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKK 196 (328)
Q Consensus 121 ~i~~~~~~a~~~-~~---~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~ 196 (328)
..+++++.++++ .. ++..+-+.++.+. ++.-.+.+++||++. + .+++|.++....++.++..
T Consensus 171 ~~e~~~~~a~~~~~~~~~G~~~iKlKvG~~~---------~~~d~~~v~avR~a~---G--~~~~l~vDaN~~~~~~~A~ 236 (390)
T 3ugv_A 171 PAEVAAEAVELKAEGQGTGFKGLKLRMGRDD---------PAVDIETAEAVWDAV---G--RDTALMVDFNQGLDMAEAM 236 (390)
T ss_dssp HHHHHHHHHHHHHTTCTTCCSEEEEECCCSS---------HHHHHHHHHHHHHHH---C--TTSEEEEECTTCCCHHHHH
T ss_pred CHHHHHHHHHHHHHhhhCCCcEEEEecCCCC---------HHHHHHHHHHHHHHh---C--CCCEEEEECCCCCCHHHHH
Confidence 345555555443 23 5888888877432 233456677777763 4 6789999999999998888
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHH
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFE 276 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~ 276 (328)
++++.+ .+.|+++|- .| ..+..++..+++++.++ +||++...+.+..|+.+
T Consensus 237 ~~~~~l--~~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~ 287 (390)
T 3ugv_A 237 HRTRQI--DDLGLEWIE-------EP------------------VVYDNFDGYAQLRHDLK--TPLMIGENFYGPREMHQ 287 (390)
T ss_dssp HHHHHH--TTSCCSEEE-------CC------------------SCTTCHHHHHHHHHHCS--SCEEECTTCCSHHHHHH
T ss_pred HHHHHH--HhhCCCEEE-------CC------------------CCcccHHHHHHHHHhcC--CCEEeCCCcCCHHHHHH
Confidence 999999 888888772 11 11223466788888887 99999999999999999
Q ss_pred HHHhc-cCeeeehhHH
Q psy5880 277 KIKAG-ASLVQIYTSF 291 (328)
Q Consensus 277 ~l~~G-Ad~V~vg~a~ 291 (328)
+++.| +|.|++--.-
T Consensus 288 ~i~~~a~d~v~ik~~~ 303 (390)
T 3ugv_A 288 ALQAGACDLVMPDFMR 303 (390)
T ss_dssp HHHTTCCSEECCBHHH
T ss_pred HHHcCCCCEEEeCccc
Confidence 99987 8999876554
No 239
>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*
Probab=97.41 E-value=0.0077 Score=56.43 Aligned_cols=114 Identities=13% Similarity=0.042 Sum_probs=86.3
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
++..+-+.++... .+.-.+.+++||++. + .+++|.++....++.++..++++.+ .+.|+++|-
T Consensus 155 G~~~~K~K~g~~~---------~~~d~~~v~avR~a~---g--~~~~l~vDan~~~~~~~a~~~~~~l--~~~~i~~iE- 217 (367)
T 3dg3_A 155 GINTFKVKVGRRP---------VQLDTAVVRALRERF---G--DAIELYVDGNRGWSAAESLRAMREM--ADLDLLFAE- 217 (367)
T ss_dssp CCCEEEEECCCSS---------THHHHHHHHHHHHHH---G--GGSEEEEECTTCSCHHHHHHHHHHT--TTSCCSCEE-
T ss_pred CccEEEEeeCCCh---------hhhHHHHHHHHHHHh---C--CCCEEEEECCCCCCHHHHHHHHHHH--HHhCCCEEE-
Confidence 4888888876410 013356777777764 3 5789999999889988889999999 888888773
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHH
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSF 291 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~ 291 (328)
.| ..+..++..+++++.++ +||++.+.+.+.+++.++++.| +|.|++=-.-
T Consensus 218 ------qP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~ 269 (367)
T 3dg3_A 218 ------EL------------------CPADDVLSRRRLVGQLD--MPFIADESVPTPADVTREVLGGSATAISIKTAR 269 (367)
T ss_dssp ------SC------------------SCTTSHHHHHHHHHHCS--SCEEECTTCSSHHHHHHHHHHTSCSEEEECHHH
T ss_pred ------CC------------------CCcccHHHHHHHHHhCC--CCEEecCCcCCHHHHHHHHHcCCCCEEEeehhh
Confidence 11 11223466778888887 9999999999999999999988 8999985443
No 240
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A
Probab=97.40 E-value=0.005 Score=57.74 Aligned_cols=114 Identities=8% Similarity=0.065 Sum_probs=86.9
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
++..+-+.+++.. ++.-.+.+++||++ ++ .+++|+++....++.++..++++.+ .+.|+++|-
T Consensus 158 G~~~~KiKvg~~~---------~~~d~~~v~avR~~---~g--~~~~l~vDan~~~~~~~a~~~~~~l--~~~~i~~iE- 220 (370)
T 1chr_A 158 RHNRFKVKLGFRS---------PQDDLIHMEALSNS---LG--SKAYLRVDVNQAWDEQVASVYIPEL--EALGVELIE- 220 (370)
T ss_dssp CCCEEEEECSSSC---------SHHHHHHHHHHHHH---SS--TTCCEEEECTTCCCTTHHHHHTHHH--HTTTEEEEE-
T ss_pred CCCEEEEecCCCC---------HHHHHHHHHHHHHh---cC--CCCEEEEECCCCCCHHHHHHHHHHH--HhcCCCEEE-
Confidence 5888888877422 23345667777776 33 5689999999889988888999999 888887762
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHH
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSF 291 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~ 291 (328)
.| ..+..++..+++++.++ +||++...+.+..++.++++.| +|.|++--.-
T Consensus 221 ------qP------------------~~~~~~~~~~~l~~~~~--iPia~dE~~~~~~~~~~~~~~~~~d~v~~k~~~ 272 (370)
T 1chr_A 221 ------QP------------------VGRENTQALRRLSDNNR--VAIMADESLSTLASAFDLARDRSVDVFSLKLCN 272 (370)
T ss_dssp ------CC------------------SCTTCHHHHHHHHHHSC--SEEEESSSCCSHHHHHHHHTTTSCSEEEECTTT
T ss_pred ------CC------------------CCcccHHHHHHHHhhCC--CCEEeCCCcCCHHHHHHHHHcCCCCEEEECccc
Confidence 11 11223466788888887 9999999999999999999877 9999986544
No 241
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=97.37 E-value=0.0035 Score=54.83 Aligned_cols=126 Identities=15% Similarity=0.093 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC--C--hhh
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL--S--LDE 194 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~--~--~~~ 194 (328)
....+.+++.+..++ +|.+.+|..+ |. +-+...++.+++. + ..+.+...++..- + .+.
T Consensus 77 pnTv~~~~~~~~~~g--ad~vtvh~~~----G~------~~l~~~~~~~~~~----g--~~v~vLt~~s~~~~~~~~~~~ 138 (228)
T 3m47_A 77 PETNEKICRATFKAG--ADAIIVHGFP----GA------DSVRACLNVAEEM----G--REVFLLTEMSHPGAEMFIQGA 138 (228)
T ss_dssp HHHHHHHHHHHHHTT--CSEEEEESTT----CH------HHHHHHHHHHHHH----T--CEEEEECCCCSGGGGTTHHHH
T ss_pred HhHHHHHHHHHHhCC--CCEEEEeccC----CH------HHHHHHHHHHHhc----C--CCeEEEEeCCCccHHHHHHHH
Confidence 345677777777776 9999987663 11 2233444444432 1 2222333444321 0 122
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH-HH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG-KD 273 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~-~d 273 (328)
...+++.. .+.|++|++++.+. .+.++.+|+.++.++++ .++||.-. .+
T Consensus 139 ~~~~a~~a--~~~G~~GvV~~at~---------------------------~~e~~~ir~~~~~~~~i-v~PGI~~~g~~ 188 (228)
T 3m47_A 139 ADEIARMG--VDLGVKNYVGPSTR---------------------------PERLSRLREIIGQDSFL-ISPGVGAQGGD 188 (228)
T ss_dssp HHHHHHHH--HHTTCCEEECCSSC---------------------------HHHHHHHHHHHCSSSEE-EECC-------
T ss_pred HHHHHHHH--HHhCCcEEEECCCC---------------------------hHHHHHHHHhcCCCCEE-EecCcCcCCCC
Confidence 45677777 88999998766431 13456777777644555 77888632 25
Q ss_pred HHHHHHhccCeeeehhHHhh
Q psy5880 274 AFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~ 293 (328)
. +++++|||.+.+||+++.
T Consensus 189 p-~~~~aGad~iVvGr~I~~ 207 (228)
T 3m47_A 189 P-GETLRFADAIIVGRSIYL 207 (228)
T ss_dssp ---CGGGTCSEEEECHHHHT
T ss_pred H-hHHHcCCCEEEECHHHhC
Confidence 6 888999999999999863
No 242
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=97.33 E-value=0.0018 Score=59.01 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=48.7
Q ss_pred ccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCe
Q psy5880 205 SKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASL 284 (328)
Q Consensus 205 ~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~ 284 (328)
.++|+|+|-+.|.. ++.++++++.++++++|.++||| |.+.+.++.++|+|.
T Consensus 225 ~~aGaD~I~ld~~~---------------------------~e~l~~~v~~~~~~~~I~ASGGI-t~~~i~~~a~~GvD~ 276 (296)
T 1qap_A 225 LKAGADIIMLDNFN---------------------------TDQMREAVKRVNGQARLEVSGNV-TAETLREFAETGVDF 276 (296)
T ss_dssp HHTTCSEEEESSCC---------------------------HHHHHHHHHTTCTTCCEEECCCS-CHHHHHHHHHTTCSE
T ss_pred HHcCCCEEEECCCC---------------------------HHHHHHHHHHhCCCCeEEEECCC-CHHHHHHHHHcCCCE
Confidence 57899999877621 24566666667667999999999 999999999999999
Q ss_pred eeehhHH
Q psy5880 285 VQIYTSF 291 (328)
Q Consensus 285 V~vg~a~ 291 (328)
+.+|+.+
T Consensus 277 isvGsli 283 (296)
T 1qap_A 277 ISVGALT 283 (296)
T ss_dssp EECSHHH
T ss_pred EEEeHHH
Confidence 9999965
No 243
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*
Probab=97.31 E-value=0.00013 Score=84.48 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCE-EEEeCCCCC-hhhHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPI-LVKIAPDLS-LDEKKD 197 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv-~vKl~~~~~-~~~~~~ 197 (328)
+.+.+.++.++..-+..-.+-+|+.++|.. ....+.+ ..++++.+.+ .++|+ .|=++.+++ .++..+
T Consensus 466 ~~l~~~i~~~r~~~~~~~p~~vNl~~~~p~-~~~~~~g--~~~~~~~~~~--------~g~~vdgv~~~aG~P~~ee~~~ 534 (3089)
T 3zen_D 466 QIFNDRIAELETLLEPGRAIQFNTLFLDPY-LWKLQVG--GKRLVQRARQ--------SGAPIDGLVVSAGIPDLEEAVD 534 (3089)
T ss_dssp HHHHHHHHHHHHHSCTTCCCEEEEECSCHH-HHHHHHH--HHHHHHHHHH--------TTCSCCEEEEESSCCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCceeechhhcChh-hhhhccC--HHHHHHHHHH--------cCCCceEEEEeCCCCchhHhHH
Confidence 344444444444321112367787776642 1111111 1334444433 35563 111232443 455566
Q ss_pred HHHHhccccCCccEEEEecCCccch----h-h-hcc-------ccccccCCCCCCcC-chHHHHHHHHHHHHcCCCccEE
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTVDRY----E-Y-LDA-------RYKEETGGLSGEPL-RNKSTELISEMYKLTKGKLPII 263 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~~~~----~-~-~~~-------~~~~~~gg~sg~~~-~~~~l~~v~~i~~~~~~~ipvi 263 (328)
+.+.+ .++|+..|.+.-++.... . + ..+ ......||..|... ...-+....++++..+ +|||
T Consensus 535 ~i~~l--~~~Gi~~i~~~~~t~~~a~~~~~i~~d~~~~~y~vv~~G~eaGGH~g~~~~~~ll~~~~~~ir~~~~--iPVi 610 (3089)
T 3zen_D 535 IIDEL--NEVGISHVVFKPGTVEQIRSVIRIAAEVPTKPVIVHIEGGRAGGHHSWEDLDDLLLATYSELRSRSN--ITIC 610 (3089)
T ss_dssp HHTST--THHHHCSEEECCCSHHHHHHHHHHHTTSTTSCEEEEECCSSSSEECCSCCHHHHHHHHHHHHTTCTT--EEEE
T ss_pred HHHHH--HHcCCEEEEEeCCCHHHHHHHHHhhhhcCCCcEEEEEeCCCcCCCCCcccHHHHHHHHHHHHhhcCC--CeEE
Confidence 77777 777877776333321100 0 0 001 01123355544321 1122233366666665 9999
Q ss_pred EecCCCCHHHHHHHH-----------HhccCeeeehhHHhh
Q psy5880 264 GVGGVFSGKDAFEKI-----------KAGASLVQIYTSFVY 293 (328)
Q Consensus 264 a~GGI~s~~da~~~l-----------~~GAd~V~vg~a~l~ 293 (328)
+.|||.+++++..++ .+|||+|++||+|+.
T Consensus 611 aaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~ 651 (3089)
T 3zen_D 611 VGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMA 651 (3089)
T ss_dssp EESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTT
T ss_pred EEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHh
Confidence 999999999999999 999999999999984
No 244
>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}
Probab=97.31 E-value=0.0046 Score=58.70 Aligned_cols=133 Identities=14% Similarity=0.047 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.+ ++..+-+++. |. .-.+.+++||++. + .+++|.+.....++.++ .++++
T Consensus 164 ~e~~~~~a~~~~~~G~~~iKlKv~-~~-----------~d~~~v~avR~a~---G--~~~~L~vDaN~~w~~~~-~~~~~ 225 (400)
T 3mwc_A 164 IETLIHQVEESLQEGYRRIKIKIK-PG-----------WDVEPLQETRRAV---G--DHFPLWTDANSSFELDQ-WETFK 225 (400)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEECB-TT-----------BSHHHHHHHHHHH---C--TTSCEEEECTTCCCGGG-HHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeC-cc-----------hHHHHHHHHHHhc---C--CCCEEEEeCCCCCCHHH-HHHHH
Confidence 4555555555433 5889988873 21 1245677777763 4 67899999998899888 89999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.|+++|- .| ..+..++..+++++.++ +||++...+.+..++.++++.
T Consensus 226 ~l--~~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~~~~ 276 (400)
T 3mwc_A 226 AM--DAAKCLFHE-------QP------------------LHYEALLDLKELGERIE--TPICLDESLISSRVAEFVAKL 276 (400)
T ss_dssp HH--GGGCCSCEE-------SC------------------SCTTCHHHHHHHHHHSS--SCEEESTTCCSHHHHHHHHHT
T ss_pred HH--HhcCCCEEe-------CC------------------CChhhHHHHHHHHhhCC--CCEEEeCCcCCHHHHHHHHhc
Confidence 99 888887772 11 11223566778888887 999999999999999999998
Q ss_pred c-cCeeeehhHHhhcCchHHHHH
Q psy5880 281 G-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 281 G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
| +|.|++--.-. .|..-..++
T Consensus 277 ~~~d~v~~k~~~~-GGit~~~~i 298 (400)
T 3mwc_A 277 GISNIWNIKIQRV-GGLLEAIKI 298 (400)
T ss_dssp TCCSEEEECHHHH-TSHHHHHHH
T ss_pred CCCCEEEEcchhh-CCHHHHHHH
Confidence 7 89999876553 344434444
No 245
>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A
Probab=97.30 E-value=0.002 Score=61.17 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=87.5
Q ss_pred cccEEEEccCCCCCc----chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCcc
Q psy5880 135 VAHYFVVNVSSPNTA----NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVD 210 (328)
Q Consensus 135 ~~d~ieiN~scPn~~----g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d 210 (328)
++..+-+...-|... +.....+.+...+.+++||++. + .+++|++.....++.++...+++.| .+.|++
T Consensus 167 G~~~~Kik~g~~~~~~~~~g~~~~~~~~~d~~~v~avR~a~---g--~~~~l~vDaN~~~~~~~A~~~~~~L--~~~~i~ 239 (400)
T 4dxk_A 167 GITAMKIWPFDAAAEKTRGQYISMPDLKSALEPFEKIRKAV---G--DKMDIMVEFHSMWQLLPAMQIAKAL--TPYQTF 239 (400)
T ss_dssp TCCEEEECTTHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHH---G--GGSEEEEECTTCBCHHHHHHHHHHT--GGGCCS
T ss_pred CCCEEEEcCCCccccccccCcCCHHHHHHHHHHHHHHHHHc---C--CCceEEEECCCCCCHHHHHHHHHHH--hhcCCC
Confidence 588888765421100 1001123445667777777764 3 5789999999999999999999999 888888
Q ss_pred EEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehh
Q psy5880 211 GLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYT 289 (328)
Q Consensus 211 ~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~ 289 (328)
+|- .| ..+..++..+++++.++ +||++...+.+..++.++++.| +|.|++=-
T Consensus 240 ~iE-------eP------------------~~~~~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d~ 292 (400)
T 4dxk_A 240 WHE-------DP------------------IKMDSLSSLTRYAAVSP--APISASETLGSRWAFRDLLETGAAGVVMLDI 292 (400)
T ss_dssp EEE-------CC------------------BCTTSGGGHHHHHHHCS--SCEEECTTCCHHHHHHHHHHTTCCCEEEECT
T ss_pred EEE-------cC------------------CCcccHHHHHHHHHhCC--CCEEecCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 874 11 01112344677888887 9999999999999999999988 89998754
Q ss_pred HH
Q psy5880 290 SF 291 (328)
Q Consensus 290 a~ 291 (328)
.-
T Consensus 293 ~~ 294 (400)
T 4dxk_A 293 SW 294 (400)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 246
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=97.29 E-value=0.002 Score=61.36 Aligned_cols=123 Identities=10% Similarity=0.065 Sum_probs=87.7
Q ss_pred cccEEEEccCCCC--Ccchh-hhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccE
Q psy5880 135 VAHYFVVNVSSPN--TANLR-KLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDG 211 (328)
Q Consensus 135 ~~d~ieiN~scPn--~~g~~-~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~ 211 (328)
++..+-++...+. ..|.. ...+.+...+.+++||++. + .+++|++.....++.++...+++.+ .+.|+++
T Consensus 171 G~~~~K~~~~~~~~~K~G~~~~~~~~~~d~e~v~avR~a~---g--~d~~l~vDaN~~~~~~~A~~~~~~L--~~~~i~~ 243 (410)
T 3dip_A 171 GYAAMKIWPFDDFASITPHHISLTDLKDGLEPFRKIRAAV---G--QRIEIMCELHSLWGTHAAARICNAL--ADYGVLW 243 (410)
T ss_dssp TCSEEEECTTHHHHTTCTTCCCHHHHHHHHHHHHHHHHHH---T--TSSEEEEECTTCBCHHHHHHHHHHG--GGGTCSE
T ss_pred CCCEEEECCccCccccccCcCCHHHHHHHHHHHHHHHHHc---C--CCceEEEECCCCCCHHHHHHHHHHH--HhcCCCE
Confidence 5888887521110 00110 1122345567777777763 4 5789999999999999999999999 8888888
Q ss_pred EEEecCCccchhhhccccccccCCCCCCc-CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehh
Q psy5880 212 LIVSNTTVDRYEYLDARYKEETGGLSGEP-LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYT 289 (328)
Q Consensus 212 i~~~n~~~~~~~~~~~~~~~~~gg~sg~~-~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~ 289 (328)
|-- | ..+..++..+++++.++ +||++.+.+.+.+++.++++.| +|.|++=-
T Consensus 244 iEq-------------------------P~~~~~~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~ 296 (410)
T 3dip_A 244 VED-------------------------PIAKMDNIPAVADLRRQTR--APICGGENLAGTRRFHEMLCADAIDFVMLDL 296 (410)
T ss_dssp EEC-------------------------CBSCTTCHHHHHHHHHHHC--CCEEECTTCCSHHHHHHHHHTTCCSEEEECT
T ss_pred EEC-------------------------CCCCcccHHHHHHHHhhCC--CCEEecCCcCCHHHHHHHHHcCCCCeEeecc
Confidence 730 1 11223566788888887 9999999999999999999988 89999865
Q ss_pred HH
Q psy5880 290 SF 291 (328)
Q Consensus 290 a~ 291 (328)
.-
T Consensus 297 ~~ 298 (410)
T 3dip_A 297 TW 298 (410)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 247
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=97.25 E-value=0.0018 Score=56.43 Aligned_cols=140 Identities=14% Similarity=0.083 Sum_probs=79.6
Q ss_pred HHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhcccc
Q psy5880 127 KGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSK 206 (328)
Q Consensus 127 ~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~ 206 (328)
+.+.+++ +|++.+|..+.. +-+...++.+++. + ....-+.|-+-+..+.+++ +.+ .+
T Consensus 76 ~~~~~~G--ad~vtVH~~~g~----------~~l~~a~~~~~~~----g-~~~~~~~Vt~lts~~~~~~----~~~--~~ 132 (221)
T 3exr_A 76 KNNAVRG--ADWMTCICSATI----------PTMKAARKAIEDI----N-PDKGEIQVELYGDWTYDQA----QQW--LD 132 (221)
T ss_dssp HHHHTTT--CSEEEEETTSCH----------HHHHHHHHHHHHH----C-TTTCEEEEECCSSCCHHHH----HHH--HH
T ss_pred HHHHHcC--CCEEEEeccCCH----------HHHHHHHHHHHhc----C-CCcceEEEEEcCCCCHHHH----HHH--Hc
Confidence 3344455 999999876311 1244455555443 1 0123456666665554332 344 46
Q ss_pred CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeee
Q psy5880 207 CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286 (328)
Q Consensus 207 ~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~ 286 (328)
.|++.++++-..... ..|...+ ..-++.+|+..+.+++|...||| +++++.++..+|||.+.
T Consensus 133 ~~~~~~v~~~a~~~~-----------~~Gvv~s------~~e~~~ir~~~~~~~~i~v~gGI-~~~~~~~~~~aGad~~V 194 (221)
T 3exr_A 133 AGISQAIYHQSRDAL-----------LAGETWG------EKDLNKVKKLIEMGFRVSVTGGL-SVDTLKLFEGVDVFTFI 194 (221)
T ss_dssp TTCCEEEEECCHHHH-----------HHTCCCC------HHHHHHHHHHHHHTCEEEEESSC-CGGGGGGGTTCCCSEEE
T ss_pred CCHHHHHHHHHHhcC-----------CCccccC------HHHHHHHHHhhcCCceEEEECCC-CHHHHHHHHHCCCCEEE
Confidence 788887764221110 1121111 12345555554334889999999 67788899999999999
Q ss_pred ehhHHhh-cCch-HHHHHHHHHH
Q psy5880 287 IYTSFVY-HGPP-LVTRIKSELE 307 (328)
Q Consensus 287 vg~a~l~-~gp~-~~~~i~~~l~ 307 (328)
+||++.. .+|. .++++++.++
T Consensus 195 vG~~I~~a~dp~~a~~~~~~~~~ 217 (221)
T 3exr_A 195 AGRGITEAKNPAGAARAFKDEIK 217 (221)
T ss_dssp ECHHHHTSSSHHHHHHHHHHHHH
T ss_pred ECchhhCCCCHHHHHHHHHHHHH
Confidence 9999863 2342 3455554443
No 248
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*
Probab=97.23 E-value=0.013 Score=55.25 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=94.5
Q ss_pred HHHHHHHHHhc-ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFG-DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~-~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+++++.++++. .++..+-+.++. +++.-.+.+++||++ ++ .+++|.+.....++.++...+++.
T Consensus 144 e~~~~~a~~~~~~Gf~~~KlK~g~----------~~~~d~~~v~avR~a---~g--~~~~L~vDaN~~w~~~~A~~~~~~ 208 (379)
T 3r0u_A 144 AETIQNIQNGVEANFTAIKVKTGA----------DFNRDIQLLKALDNE---FS--KNIKFRFDANQGWNLAQTKQFIEE 208 (379)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSS----------CHHHHHHHHHHHHHH---CC--TTSEEEEECTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEeeecCC----------CHHHHHHHHHHHHHh---cC--CCCeEEEeCCCCcCHHHHHHHHHH
Confidence 44444444433 258889888762 123345667777776 33 478999999989999899999999
Q ss_pred hcccc--CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 202 VLDSK--CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 202 l~~~~--~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+ .+ .|+.+|- .| ..+..++..+++++.++ +||.+...+.+..|+.++++
T Consensus 209 l--~~~~~~l~~iE-------eP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~ 259 (379)
T 3r0u_A 209 I--NKYSLNVEIIE-------QP------------------VKYYDIKAMAEITKFSN--IPVVADESVFDAKDAERVID 259 (379)
T ss_dssp H--HTSCCCEEEEE-------CC------------------SCTTCHHHHHHHHHHCS--SCEEESTTCSSHHHHHHHHH
T ss_pred H--hhcCCCcEEEE-------CC------------------CCcccHHHHHHHHhcCC--CCEEeCCccCCHHHHHHHHH
Confidence 9 77 6666652 11 11223566788888887 99999999999999999999
Q ss_pred hc-cCeeeehhHHhhcCchHHHHH
Q psy5880 280 AG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 280 ~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
.| +|.|++--... .|..-..++
T Consensus 260 ~~a~d~v~~k~~~~-GGi~~~~~i 282 (379)
T 3r0u_A 260 EQACNMINIKLAKT-GGILEAQKI 282 (379)
T ss_dssp TTCCSEEEECHHHH-TSHHHHHHH
T ss_pred cCCCCEEEECcccc-CCHHHHHHH
Confidence 87 89999866553 344333343
No 249
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=97.17 E-value=0.0021 Score=58.12 Aligned_cols=90 Identities=16% Similarity=0.228 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCch
Q psy5880 164 LKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRN 243 (328)
Q Consensus 164 ~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~ 243 (328)
..+++++++..+ ...+|.+=.. + ..++ +.+ .++|+|+|.+.|-+.
T Consensus 183 ~~av~~ar~~~~--~~~~IgVev~---t---~eea-~eA--~~aGaD~I~ld~~~~------------------------ 227 (286)
T 1x1o_A 183 GEAVRRAKARAP--HYLKVEVEVR---S---LEEL-EEA--LEAGADLILLDNFPL------------------------ 227 (286)
T ss_dssp HHHHHHHHHHSC--TTSCEEEEES---S---HHHH-HHH--HHHTCSEEEEESCCH------------------------
T ss_pred HHHHHHHHHhCC--CCCEEEEEeC---C---HHHH-HHH--HHcCCCEEEECCCCH------------------------
Confidence 445555544443 3467777331 2 3344 334 578999998877322
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 244 KSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 244 ~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
+.++++.+.+++++|+.++||| |.+.+.++.++|+|.|.+|+.+.
T Consensus 228 ---~~~k~av~~v~~~ipi~AsGGI-t~eni~~~a~tGvD~IsVgs~~~ 272 (286)
T 1x1o_A 228 ---EALREAVRRVGGRVPLEASGNM-TLERAKAAAEAGVDYVSVGALTH 272 (286)
T ss_dssp ---HHHHHHHHHHTTSSCEEEESSC-CHHHHHHHHHHTCSEEECTHHHH
T ss_pred ---HHHHHHHHHhCCCCeEEEEcCC-CHHHHHHHHHcCCCEEEEcHHHc
Confidence 2233444444345999999999 59999999999999999988764
No 250
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Probab=97.15 E-value=0.0064 Score=53.47 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=34.9
Q ss_pred HHHHHHHcCCCccEEEecCCCCHHH----------HHHHHHhccCeeeehhHHhhcCch
Q psy5880 249 ISEMYKLTKGKLPIIGVGGVFSGKD----------AFEKIKAGASLVQIYTSFVYHGPP 297 (328)
Q Consensus 249 v~~i~~~~~~~ipvia~GGI~s~~d----------a~~~l~~GAd~V~vg~a~l~~gp~ 297 (328)
++++++..+ ..+++..|||+-... ..+++++|||.+.+||+++. .++
T Consensus 166 i~~lr~~~~-~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I~~-a~d 222 (239)
T 1dbt_A 166 AKAIYQAVS-PSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITK-AED 222 (239)
T ss_dssp HHHHTTTSC-TTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHT-SSC
T ss_pred HHHHHHhcC-CCcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEChhhcC-CCC
Confidence 455666654 468999999985433 36778999999999999974 344
No 251
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A
Probab=97.14 E-value=0.012 Score=55.56 Aligned_cols=132 Identities=16% Similarity=0.155 Sum_probs=94.1
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
++..+-+.++... .+.-.+.+++||++. .+++|.+.....++.++..++++.+ .+.|+++|-
T Consensus 163 G~~~~K~Kvg~~~---------~~~d~~~v~avR~a~------~~~~l~vDan~~~~~~~A~~~~~~L--~~~~i~~iE- 224 (385)
T 3i6e_A 163 GVGLIKLKTGFRD---------HAFDIMRLELIARDF------PEFRVRVDYNQGLEIDEAVPRVLDV--AQFQPDFIE- 224 (385)
T ss_dssp TCCEEEEECSSSC---------HHHHHHHHHHHHHHC------TTSEEEEECTTCCCGGGHHHHHHHH--HTTCCSCEE-
T ss_pred CCCEEEEecCCCC---------HHHHHHHHHHHHHhC------CCCeEEEECCCCCCHHHHHHHHHHH--HhcCCCEEE-
Confidence 5889988876421 223456677777763 4789999999889988888999999 888888772
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhh
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVY 293 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~ 293 (328)
.| ..+..++..+++++.++ +||++...+.+..++.++++.| +|.|++--.-.
T Consensus 225 ------qP------------------~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~- 277 (385)
T 3i6e_A 225 ------QP------------------VRAHHFELMARLRGLTD--VPLLADESVYGPEDMVRAAHEGICDGVSIKIMKS- 277 (385)
T ss_dssp ------CC------------------SCTTCHHHHHHHHTTCS--SCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHH-
T ss_pred ------CC------------------CCcccHHHHHHHHHhCC--CCEEEeCCcCCHHHHHHHHHcCCCCEEEeccccc-
Confidence 11 11223566788888876 9999999999999999999977 89999876553
Q ss_pred cCchHHHHHHHHHHHHHHHhCC
Q psy5880 294 HGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 294 ~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
.|..-..++ ..+.+.+|+
T Consensus 278 GGit~~~~i----~~~A~~~gi 295 (385)
T 3i6e_A 278 GGLTRAQTV----ARIAAAHGL 295 (385)
T ss_dssp TSHHHHHHH----HHHHHHTTC
T ss_pred CCHHHHHHH----HHHHHHcCC
Confidence 344333343 333445554
No 252
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=97.14 E-value=0.0061 Score=53.22 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.+-++.+..++ +|++. +|++. .++++..++ .++|++.= -.+ ..++ ..+
T Consensus 88 ~d~~~~A~~aG--Ad~v~----~p~~d-----------~~v~~~~~~--------~g~~~i~G---~~t---~~e~-~~A 135 (225)
T 1mxs_A 88 RSMFAAVEAAG--AQFVV----TPGIT-----------EDILEAGVD--------SEIPLLPG---IST---PSEI-MMG 135 (225)
T ss_dssp HHHHHHHHHHT--CSSEE----CSSCC-----------HHHHHHHHH--------CSSCEECE---ECS---HHHH-HHH
T ss_pred HHHHHHHHHCC--CCEEE----eCCCC-----------HHHHHHHHH--------hCCCEEEe---eCC---HHHH-HHH
Confidence 35566677777 88885 55542 122222222 35565532 233 2344 345
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchH-HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH-h
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNK-STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK-A 280 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~-~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~-~ 280 (328)
.++|+|+|-++. . .+. ++++++.+++.++ ++|+++.||| +++.+.+++. .
T Consensus 136 --~~~Gad~vk~FP---a---------------------~~~~G~~~lk~i~~~~~-~ipvvaiGGI-~~~N~~~~l~~~ 187 (225)
T 1mxs_A 136 --YALGYRRFKLFP---A---------------------EISGGVAAIKAFGGPFG-DIRFCPTGGV-NPANVRNYMALP 187 (225)
T ss_dssp --HTTTCCEEEETT---H---------------------HHHTHHHHHHHHHTTTT-TCEEEEBSSC-CTTTHHHHHHST
T ss_pred --HHCCCCEEEEcc---C---------------------ccccCHHHHHHHHhhCC-CCeEEEECCC-CHHHHHHHHhcc
Confidence 689999997732 1 011 3578888888874 5999999999 6789999999 7
Q ss_pred ccCeeeehhHHh
Q psy5880 281 GASLVQIYTSFV 292 (328)
Q Consensus 281 GAd~V~vg~a~l 292 (328)
|+++|. +|+++
T Consensus 188 Ga~~v~-gSai~ 198 (225)
T 1mxs_A 188 NVMCVG-TTWML 198 (225)
T ss_dssp TBCCEE-ECTTS
T ss_pred CCEEEE-Echhc
Confidence 999999 99886
No 253
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=97.11 E-value=0.003 Score=59.11 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCC
Q psy5880 159 QLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG 238 (328)
Q Consensus 159 ~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg 238 (328)
...+.++.+++. .+.|+.+-+.... .+.++.+ .++|+|.|++.... |
T Consensus 82 ~~~~~I~~vk~~-------~~~pvga~ig~~~-----~e~a~~l--~eaGad~I~ld~a~-------------------G 128 (361)
T 3khj_A 82 SQVNEVLKVKNS-------GGLRVGAAIGVNE-----IERAKLL--VEAGVDVIVLDSAH-------------------G 128 (361)
T ss_dssp HHHHHHHHHHHT-------TCCCCEEEECTTC-----HHHHHHH--HHTTCSEEEECCSC-------------------C
T ss_pred HHHHHHHHHHhc-------cCceEEEEeCCCH-----HHHHHHH--HHcCcCeEEEeCCC-------------------C
Confidence 344555555543 5689998886532 4567778 89999999764221 1
Q ss_pred CcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 239 EPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 239 ~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
. ....++.++++++.++ +||++ |++.|++++.++.++|||+|.+|
T Consensus 129 ~--~~~~~~~i~~i~~~~~--~~Viv-g~v~t~e~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 129 H--SLNIIRTLKEIKSKMN--IDVIV-GNVVTEEATKELIENGADGIKVG 173 (361)
T ss_dssp S--BHHHHHHHHHHHHHCC--CEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred C--cHHHHHHHHHHHHhcC--CcEEE-ccCCCHHHHHHHHHcCcCEEEEe
Confidence 1 1233577888888875 88887 67899999999999999999985
No 254
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=97.07 E-value=0.0071 Score=52.35 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.+-++.+..++ +|++. +|++. .++.+..++ .+.|++.= -.+ ..++ ..+
T Consensus 78 ~d~~~~A~~aG--Ad~v~----~p~~d-----------~~v~~~~~~--------~g~~~i~G---~~t---~~e~-~~A 125 (214)
T 1wbh_A 78 PQQLAEVTEAG--AQFAI----SPGLT-----------EPLLKAATE--------GTIPLIPG---IST---VSEL-MLG 125 (214)
T ss_dssp HHHHHHHHHHT--CSCEE----ESSCC-----------HHHHHHHHH--------SSSCEEEE---ESS---HHHH-HHH
T ss_pred HHHHHHHHHcC--CCEEE----cCCCC-----------HHHHHHHHH--------hCCCEEEe---cCC---HHHH-HHH
Confidence 35566677777 89885 45542 123332222 35676652 223 3344 334
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh-c
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA-G 281 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~-G 281 (328)
.++|+|++-++... . .| ++++++.+++.++ ++|+++.||| +++.+.+++.+ |
T Consensus 126 --~~~Gad~v~~Fpa~---~----------~g----------G~~~lk~i~~~~~-~ipvvaiGGI-~~~n~~~~l~agg 178 (214)
T 1wbh_A 126 --MDYGLKEFKFFPAE---A----------NG----------GVKALQAIAGPFS-QVRFCPTGGI-SPANYRDYLALKS 178 (214)
T ss_dssp --HHTTCCEEEETTTT---T----------TT----------HHHHHHHHHTTCT-TCEEEEBSSC-CTTTHHHHHTSTT
T ss_pred --HHCCCCEEEEecCc---c----------cc----------CHHHHHHHhhhCC-CCeEEEECCC-CHHHHHHHHhcCC
Confidence 58999999773210 0 01 2577888888874 4999999999 46899999998 8
Q ss_pred cCeeeehhHHh
Q psy5880 282 ASLVQIYTSFV 292 (328)
Q Consensus 282 Ad~V~vg~a~l 292 (328)
+++|. +|++.
T Consensus 179 ~~~v~-gS~i~ 188 (214)
T 1wbh_A 179 VLCIG-GSWLV 188 (214)
T ss_dssp BSCEE-EGGGS
T ss_pred CeEEE-ecccc
Confidence 99999 99885
No 255
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*
Probab=97.07 E-value=0.015 Score=51.36 Aligned_cols=44 Identities=9% Similarity=-0.024 Sum_probs=33.6
Q ss_pred HHHHHHHcCCCccEEEecCCCCH-H---------HHHHHHHhccCeeeehhHHhh
Q psy5880 249 ISEMYKLTKGKLPIIGVGGVFSG-K---------DAFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 249 v~~i~~~~~~~ipvia~GGI~s~-~---------da~~~l~~GAd~V~vg~a~l~ 293 (328)
++++++..+. .+++..|||+-. . .+.+++++|||.+.+||+++.
T Consensus 167 i~~lr~~~~~-~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~ 220 (246)
T 2yyu_A 167 AAFIKERCGA-SFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTR 220 (246)
T ss_dssp HHHHHHHHCT-TSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHT
T ss_pred HHHHHHhcCC-CCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhhcC
Confidence 6777777643 459999999742 1 366777899999999999974
No 256
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=97.05 E-value=0.0055 Score=53.02 Aligned_cols=93 Identities=26% Similarity=0.288 Sum_probs=72.2
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG 258 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~ 258 (328)
..|++.=++.. +.++...+++.| .+.|++.|-++-++. .+++.|+++++.++
T Consensus 12 ~~~vi~Vir~~-~~~~a~~~a~al--~~gGi~~iEvt~~t~------------------------~a~~~I~~l~~~~p- 63 (217)
T 3lab_A 12 TKPLIPVIVID-DLVHAIPMAKAL--VAGGVHLLEVTLRTE------------------------AGLAAISAIKKAVP- 63 (217)
T ss_dssp SCSEEEEECCS-CGGGHHHHHHHH--HHTTCCEEEEETTST------------------------THHHHHHHHHHHCT-
T ss_pred hCCEEEEEEcC-CHHHHHHHHHHH--HHcCCCEEEEeCCCc------------------------cHHHHHHHHHHHCC-
Confidence 34776666654 456789999999 999999998875432 35688999999987
Q ss_pred CccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHH
Q psy5880 259 KLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 259 ~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~ 304 (328)
-.+|+.|-|.|.+++.+++++||+++.. .-+ +|++++..++
T Consensus 64 -~~~IGAGTVlt~~~a~~ai~AGA~fivs--P~~--~~evi~~~~~ 104 (217)
T 3lab_A 64 -EAIVGAGTVCTADDFQKAIDAGAQFIVS--PGL--TPELIEKAKQ 104 (217)
T ss_dssp -TSEEEEECCCSHHHHHHHHHHTCSEEEE--SSC--CHHHHHHHHH
T ss_pred -CCeEeeccccCHHHHHHHHHcCCCEEEe--CCC--cHHHHHHHHH
Confidence 4899999999999999999999999853 222 4677766554
No 257
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=97.03 E-value=0.0014 Score=59.04 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCch
Q psy5880 164 LKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRN 243 (328)
Q Consensus 164 ~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~ 243 (328)
.++++.+++..+ ...++.+=.. + +.++.+ + .++|+|+|-+.+.. +
T Consensus 169 ~~ai~~~r~~~~--~~~~i~vev~---t---lee~~~-A--~~aGaD~I~ld~~~------------------------~ 213 (273)
T 2b7n_A 169 KSFLTHARKNLP--FTAKIEIECE---S---FEEAKN-A--MNAGADIVMCDNLS------------------------V 213 (273)
T ss_dssp HHHHHHHGGGSC--TTCCEEEEES---S---HHHHHH-H--HHHTCSEEEEETCC------------------------H
T ss_pred HHHHHHHHHhCC--CCceEEEEcC---C---HHHHHH-H--HHcCCCEEEECCCC------------------------H
Confidence 445555544332 2346666332 1 334333 4 46899999876521 1
Q ss_pred HHH-HHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 244 KST-ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 244 ~~l-~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
..+ ..++.++...+ ++||.++||| |.+.+.+++++|||.+.+|+.+.
T Consensus 214 ~~l~~~v~~l~~~~~-~~~i~AsGGI-~~~ni~~~~~aGaD~i~vGs~i~ 261 (273)
T 2b7n_A 214 LETKEIAAYRDAHYP-FVLLEASGNI-SLESINAYAKSGVDAISVGALIH 261 (273)
T ss_dssp HHHHHHHHHHHHHCT-TCEEEEESSC-CTTTHHHHHTTTCSEEECTHHHH
T ss_pred HHHHHHHHHhhccCC-CcEEEEECCC-CHHHHHHHHHcCCcEEEEcHHhc
Confidence 111 22233333332 5999999999 99999999999999999999875
No 258
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=96.97 E-value=0.0044 Score=55.63 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=63.7
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..++|+.. +++|+++|++..-. +.+.| +++.++.+++.++ +||+--+.|.++.+
T Consensus 80 dp~~~A~~y--~~~GA~~IsVltd~---------------~~f~G------s~~~L~~ir~~v~--lPVl~Kdfi~d~~q 134 (272)
T 3tsm_A 80 DPPALAKAY--EEGGAACLSVLTDT---------------PSFQG------APEFLTAARQACS--LPALRKDFLFDPYQ 134 (272)
T ss_dssp CHHHHHHHH--HHTTCSEEEEECCS---------------TTTCC------CHHHHHHHHHTSS--SCEEEESCCCSTHH
T ss_pred CHHHHHHHH--HHCCCCEEEEeccc---------------cccCC------CHHHHHHHHHhcC--CCEEECCccCCHHH
Confidence 478899999 99999999875321 11222 2467888898887 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i 302 (328)
+.++..+|||+|.+..+.+ . +.-++++
T Consensus 135 i~ea~~~GAD~VlLi~a~L-~-~~~l~~l 161 (272)
T 3tsm_A 135 VYEARSWGADCILIIMASV-D-DDLAKEL 161 (272)
T ss_dssp HHHHHHTTCSEEEEETTTS-C-HHHHHHH
T ss_pred HHHHHHcCCCEEEEccccc-C-HHHHHHH
Confidence 9999999999999998876 3 4444443
No 259
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=96.97 E-value=0.0069 Score=53.88 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=64.6
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..++++.. +++|+++|++-.-. +.+.|. .+.++.+++.++ +||..-++|.+..+
T Consensus 66 ~p~~~A~~~--~~~GA~~isvlt~~---------------~~f~G~------~~~l~~i~~~v~--lPvl~kdfI~d~~q 120 (254)
T 1vc4_A 66 DPVEAALAY--ARGGARAVSVLTEP---------------HRFGGS------LLDLKRVREAVD--LPLLRKDFVVDPFM 120 (254)
T ss_dssp CHHHHHHHH--HHTTCSEEEEECCC---------------SSSCCC------HHHHHHHHHHCC--SCEEEESCCCSHHH
T ss_pred CHHHHHHHH--HHcCCCEEEEecch---------------hhhccC------HHHHHHHHHhcC--CCEEECCcCCCHHH
Confidence 468899999 99999999874211 112222 467788888887 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~ 304 (328)
+.+++.+|||+|.++...+ . ..++++..
T Consensus 121 i~~a~~~GAD~VlL~~~~l-~--~~l~~l~~ 148 (254)
T 1vc4_A 121 LEEARAFGASAALLIVALL-G--ELTGAYLE 148 (254)
T ss_dssp HHHHHHTTCSEEEEEHHHH-G--GGHHHHHH
T ss_pred HHHHHHcCCCEEEECccch-H--HHHHHHHH
Confidence 9999999999999999886 3 45555543
No 260
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=96.95 E-value=0.048 Score=49.45 Aligned_cols=177 Identities=16% Similarity=0.176 Sum_probs=95.6
Q ss_pred CcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCC-C
Q psy5880 68 TANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSS-P 146 (328)
Q Consensus 68 ~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~sc-P 146 (328)
..|+++.. .-.+.+.+..++..... ...|+.+.++-+- +. ....+...+....+++ ++++.|.=.+ |
T Consensus 52 ~~G~pD~~-~vt~~em~~~~~~I~~~----~~~PviaD~d~Gy--g~---~~~~~~~~v~~l~~aG--a~gv~iEd~~~~ 119 (295)
T 1xg4_A 52 SLGLPDLG-ISTLDDVLTDIRRITDV----CSLPLLVDADIGF--GS---SAFNVARTVKSMIKAG--AAGLHIEDQVGA 119 (295)
T ss_dssp TTCCCSSS-CSCHHHHHHHHHHHHHH----CCSCEEEECTTCS--SS---SHHHHHHHHHHHHHHT--CSEEEEECBCSS
T ss_pred hcCCCCCC-CCCHHHHHHHHHHHHhh----CCCCEEecCCccc--CC---CHHHHHHHHHHHHHcC--CeEEEECCCCCC
Confidence 45666543 22234444444333321 2357766655431 11 1234444444444555 8998887554 2
Q ss_pred CCcchh---hhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC----ChhhHHHHHHHhccccCCccEEEEecCCc
Q psy5880 147 NTANLR---KLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL----SLDEKKDIADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 147 n~~g~~---~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~----~~~~~~~~a~~l~~~~~G~d~i~~~n~~~ 219 (328)
...++. .+-..+...+-++++++++ ...++.+.-+.+- ..++..+-++.+ .++|+|.|.+.+..
T Consensus 120 k~cgH~~gk~L~p~~~~~~~I~Aa~~a~------~~~~~~i~aRtda~~~~gl~~ai~ra~ay--~eAGAd~i~~e~~~- 190 (295)
T 1xg4_A 120 KRSGHRPNKAIVSKEEMVDRIRAAVDAK------TDPDFVIMARTDALAVEGLDAAIERAQAY--VEAGAEMLFPEAIT- 190 (295)
T ss_dssp CCCTTSSSCCBCCHHHHHHHHHHHHHHC------SSTTSEEEEEECCHHHHCHHHHHHHHHHH--HHTTCSEEEETTCC-
T ss_pred cccCCCCCCccCCHHHHHHHHHHHHHhc------cCCCcEEEEecHHhhhcCHHHHHHHHHHH--HHcCCCEEEEeCCC-
Confidence 211211 1111223333444444442 2344544443331 124567777888 89999999876521
Q ss_pred cchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCC--CCH-HHHHHHHHhccCeeeehhHHh
Q psy5880 220 DRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGV--FSG-KDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 220 ~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI--~s~-~da~~~l~~GAd~V~vg~a~l 292 (328)
..+.++++.+.++ +|++++.-. .++ -...++-+.|.+.|.++.+++
T Consensus 191 -------------------------~~~~~~~i~~~~~--iP~~~N~~~~g~~p~~~~~eL~~~G~~~v~~~~~~~ 239 (295)
T 1xg4_A 191 -------------------------ELAMYRQFADAVQ--VPILANITEFGATPLFTTDELRSAHVAMALYPLSAF 239 (295)
T ss_dssp -------------------------SHHHHHHHHHHHC--SCBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHHH
T ss_pred -------------------------CHHHHHHHHHHcC--CCEEEEecccCCCCCCCHHHHHHcCCCEEEEChHHH
Confidence 1366788888887 999876533 222 234555579999999998876
No 261
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=96.93 E-value=0.03 Score=50.72 Aligned_cols=110 Identities=14% Similarity=0.004 Sum_probs=68.8
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.++||++|-....+.+|+...++.+ .+.|-+-|++.-+...++ + ......+..+..+++ +.
T Consensus 154 ~gkPVilK~Gms~t~~ei~~ave~i--~~~Gn~~iiL~erg~~y~-------------~---~~~~vdl~~i~~lk~-~~ 214 (298)
T 3fs2_A 154 TGRVVNVKKGQFLAPWDMKNVLAKI--TESGNPNVLATERGVSFG-------------Y---NTLVSDMRALPIMAG-LG 214 (298)
T ss_dssp TTSEEEEECCTTCCGGGHHHHHHHH--HTTTCCCEEEEECCEECS-------------S---SCEECCTTHHHHHHT-TT
T ss_pred cCCcEEEeCCCCCCHHHHHHHHHHH--HHcCCCeEEEEECCCCCC-------------C---CCCccCHHHHHHHHH-cC
Confidence 5789999998877888899999999 899988777754433211 1 111123566777787 65
Q ss_pred CCccEEEe---------------cCCCC--HHHHHHHHHhccCeeeehhHH-----hhc-----CchHHHHHHHHHHH
Q psy5880 258 GKLPIIGV---------------GGVFS--GKDAFEKIKAGASLVQIYTSF-----VYH-----GPPLVTRIKSELEE 308 (328)
Q Consensus 258 ~~ipvia~---------------GGI~s--~~da~~~l~~GAd~V~vg~a~-----l~~-----gp~~~~~i~~~l~~ 308 (328)
+||+.. ||-+. +.-+..++.+|||+++|=+-+ +.+ .|+-++++.+.++.
T Consensus 215 --~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H~tpd~al~D~~~sl~p~el~~lv~~ir~ 290 (298)
T 3fs2_A 215 --APVIFDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIETHEDPDNAPSDGPNMVPIDKMPALLEKLMA 290 (298)
T ss_dssp --SCEEEEHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEEESSGGGCSSSGGGCEEGGGHHHHHHHHHH
T ss_pred --CcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEecCChhccCCchhhcCCHHHHHHHHHHHHH
Confidence 999882 33222 234667888999966553211 011 25556666666554
No 262
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=96.90 E-value=0.0065 Score=54.61 Aligned_cols=74 Identities=11% Similarity=0.119 Sum_probs=60.4
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..++|+.. ++.|+++|++..-... + .-+++.++.+++.++ +||+.-+.|.+..+
T Consensus 73 ~p~~~A~~y--~~~GA~~isvltd~~~---------------f------~Gs~~~l~~ir~~v~--lPvl~kdfiid~~q 127 (272)
T 3qja_A 73 DPAKLAQAY--QDGGARIVSVVTEQRR---------------F------QGSLDDLDAVRASVS--IPVLRKDFVVQPYQ 127 (272)
T ss_dssp CHHHHHHHH--HHTTCSEEEEECCGGG---------------H------HHHHHHHHHHHHHCS--SCEEEESCCCSHHH
T ss_pred CHHHHHHHH--HHcCCCEEEEecChhh---------------c------CCCHHHHHHHHHhCC--CCEEECccccCHHH
Confidence 467899999 8999999987632110 1 113678899999887 99999999999999
Q ss_pred HHHHHHhccCeeeehhHHh
Q psy5880 274 AFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l 292 (328)
+.+++.+|||+|.++.+.+
T Consensus 128 v~~A~~~GAD~VlLi~a~l 146 (272)
T 3qja_A 128 IHEARAHGADMLLLIVAAL 146 (272)
T ss_dssp HHHHHHTTCSEEEEEGGGS
T ss_pred HHHHHHcCCCEEEEecccC
Confidence 9999999999999988875
No 263
>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A
Probab=96.89 E-value=0.0014 Score=56.80 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=62.8
Q ss_pred hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCC-H
Q psy5880 193 DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFS-G 271 (328)
Q Consensus 193 ~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s-~ 271 (328)
+....+++.+ .++|++|++++.+.. +.++.+|+.++ + .++.++||+- +
T Consensus 115 ~~v~~~a~~a--~~~G~~GvV~sat~~---------------------------~e~~~ir~~~~-~-f~~v~pGI~~~g 163 (215)
T 3ve9_A 115 AFYPYLREVA--RRVNPKGFVAPATRP---------------------------SMISRVKGDFP-D-KLVISPGVGTQG 163 (215)
T ss_dssp GGHHHHHHHH--HHHCCSEEECCTTSH---------------------------HHHHHHHHHCT-T-SEEEECCTTSTT
T ss_pred HHHHHHHHHH--HHcCCCceeeCCCCH---------------------------HHHHHHHHhCC-C-cEEEcCCCCcCc
Confidence 4477888888 899999998765421 23567788876 4 6888899973 2
Q ss_pred HHHHHHHHhccCeeeehhHHhhc-Cc-hHHHHHHHHHHHHH
Q psy5880 272 KDAFEKIKAGASLVQIYTSFVYH-GP-PLVTRIKSELEELL 310 (328)
Q Consensus 272 ~da~~~l~~GAd~V~vg~a~l~~-gp-~~~~~i~~~l~~~m 310 (328)
.+..+++++|||.+.+||++... +| ..++++++++++.+
T Consensus 164 ~~~~~a~~~Gad~iVvGr~I~~a~dp~~a~~~i~~~i~~~~ 204 (215)
T 3ve9_A 164 AKPGIALCHGADYEIVGRSVYQSADPVRKLEEIVRSQEEVL 204 (215)
T ss_dssp CCTTHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHcCCCEEEeCHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 26777889999999999999743 45 24666666665543
No 264
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=96.85 E-value=0.0019 Score=58.86 Aligned_cols=33 Identities=6% Similarity=0.055 Sum_probs=30.7
Q ss_pred CccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 259 KLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 259 ~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
+++|.++||| |.+.+.++.++|||.+.+|+.+.
T Consensus 244 ~~~I~ASGGI-t~~ni~~~~~aGaD~i~vGs~i~ 276 (299)
T 2jbm_A 244 SVAVEASGGI-TLDNLPQFCGPHIDVISMGMLTQ 276 (299)
T ss_dssp TSEEEEESSC-CTTTHHHHCCTTCCEEECTHHHH
T ss_pred CeeEEEECCC-CHHHHHHHHHCCCCEEEEChhhc
Confidence 4999999999 99999999999999999999764
No 265
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=96.84 E-value=0.017 Score=50.59 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=67.2
Q ss_pred CEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCc
Q psy5880 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKL 260 (328)
Q Consensus 181 Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~i 260 (328)
||+.=++.. +.++...+++.+ .+.|+..|-++-++. .+++.++++++.++ -
T Consensus 35 ~vv~Vir~~-~~~~a~~~a~al--~~gGi~~iEvt~~t~------------------------~a~e~I~~l~~~~~--~ 85 (232)
T 4e38_A 35 KVIPVIAID-NAEDIIPLGKVL--AENGLPAAEITFRSD------------------------AAVEAIRLLRQAQP--E 85 (232)
T ss_dssp CEEEEECCS-SGGGHHHHHHHH--HHTTCCEEEEETTST------------------------THHHHHHHHHHHCT--T
T ss_pred CEEEEEEcC-CHHHHHHHHHHH--HHCCCCEEEEeCCCC------------------------CHHHHHHHHHHhCC--C
Confidence 444434433 345789999999 999999998765432 24688999999886 4
Q ss_pred cEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHH
Q psy5880 261 PIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIK 303 (328)
Q Consensus 261 pvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~ 303 (328)
.+++.|-|-+.+++..++++||++|.... .++++++..+
T Consensus 86 ~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~----~~~~vi~~~~ 124 (232)
T 4e38_A 86 MLIGAGTILNGEQALAAKEAGATFVVSPG----FNPNTVRACQ 124 (232)
T ss_dssp CEEEEECCCSHHHHHHHHHHTCSEEECSS----CCHHHHHHHH
T ss_pred CEEeECCcCCHHHHHHHHHcCCCEEEeCC----CCHHHHHHHH
Confidence 79999999999999999999999997542 1356655543
No 266
>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A
Probab=96.82 E-value=0.049 Score=51.18 Aligned_cols=124 Identities=12% Similarity=0.142 Sum_probs=90.0
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
++..+-+.++... .+.-.+.+++||++. + .+++|.+.....++.++..++++.+ .+.|+.+|-
T Consensus 164 G~~~~KiKvg~~~---------~~~d~~~v~avR~a~---g--~~~~l~vDaN~~~~~~~A~~~~~~l--~~~~i~~iE- 226 (382)
T 3dgb_A 164 RHRIFKLKIGAGE---------VDRDLAHVIAIKKAL---G--DSASVRVDVNQAWDEAVALRACRIL--GGNGIDLIE- 226 (382)
T ss_dssp SCSEEEEECCSSC---------HHHHHHHHHHHHHHH---G--GGSEEEEECTTCBCHHHHHHHHHHH--HTTTCCCEE-
T ss_pred CCCEEEEeeCCCC---------HHHHHHHHHHHHHHc---C--CCCeEEEeCCCCCCHHHHHHHHHHH--hhcCcCeee-
Confidence 5888888776321 223456677777763 3 4689999999889988888999999 888877662
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhh
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVY 293 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~ 293 (328)
.| ..+..++..+++++.++ +||++...+.+..|+.++++.| +|.|++--.-.
T Consensus 227 ------qP------------------~~~~d~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~- 279 (382)
T 3dgb_A 227 ------QP------------------ISRNNRAGMVRLNASSP--APIMADESIECVEDAFNLAREGAASVFALKIAKN- 279 (382)
T ss_dssp ------CC------------------BCTTCHHHHHHHHHHCS--SCEEESTTCSSHHHHHHHHHHTCCSEEEECHHHH-
T ss_pred ------CC------------------CCccCHHHHHHHHHhCC--CCEEeCCCcCCHHHHHHHHHcCCCCEEEeccccc-
Confidence 11 11223566788888887 9999999999999999999976 89999865543
Q ss_pred cCchHHHHH
Q psy5880 294 HGPPLVTRI 302 (328)
Q Consensus 294 ~gp~~~~~i 302 (328)
.|..-..++
T Consensus 280 GGit~~~~i 288 (382)
T 3dgb_A 280 GGPRATLRT 288 (382)
T ss_dssp TSHHHHHHH
T ss_pred CCHHHHHHH
Confidence 344333443
No 267
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=96.82 E-value=0.014 Score=50.51 Aligned_cols=125 Identities=15% Similarity=0.208 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+....+++++...+ ++.+|+.+..|+. .+.++++++.. .+.-|.+ ..-++.+ + +
T Consensus 25 ~~a~~~a~al~~gG--i~~iEvt~~t~~a------------~~~I~~l~~~~------p~~~IGA--GTVlt~~---~-a 78 (217)
T 3lab_A 25 VHAIPMAKALVAGG--VHLLEVTLRTEAG------------LAAISAIKKAV------PEAIVGA--GTVCTAD---D-F 78 (217)
T ss_dssp GGHHHHHHHHHHTT--CCEEEEETTSTTH------------HHHHHHHHHHC------TTSEEEE--ECCCSHH---H-H
T ss_pred HHHHHHHHHHHHcC--CCEEEEeCCCccH------------HHHHHHHHHHC------CCCeEee--ccccCHH---H-H
Confidence 45677777777766 9999997776542 35566666552 2322222 2234432 2 5
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCc------cEEEecCCCCHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKL------PIIGVGGVFSGKD 273 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~i------pvia~GGI~s~~d 273 (328)
+.+ .++|+++|+.-+.. -+.++..++. + + |++. |+.|+++
T Consensus 79 ~~a--i~AGA~fivsP~~~---------------------------~evi~~~~~~-~--v~~~~~~~~~P--G~~TptE 124 (217)
T 3lab_A 79 QKA--IDAGAQFIVSPGLT---------------------------PELIEKAKQV-K--LDGQWQGVFLP--GVATASE 124 (217)
T ss_dssp HHH--HHHTCSEEEESSCC---------------------------HHHHHHHHHH-H--HHCSCCCEEEE--EECSHHH
T ss_pred HHH--HHcCCCEEEeCCCc---------------------------HHHHHHHHHc-C--CCccCCCeEeC--CCCCHHH
Confidence 666 79999999543311 1334444442 2 6 7777 8899999
Q ss_pred HHHHHHhccCeeeehhHHhhcCchHHHHHHH
Q psy5880 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~ 304 (328)
+.+++++|||.|-+.-+-...||.+++.++.
T Consensus 125 ~~~A~~~Gad~vK~FPa~~~gG~~~lkal~~ 155 (217)
T 3lab_A 125 VMIAAQAGITQLKCFPASAIGGAKLLKAWSG 155 (217)
T ss_dssp HHHHHHTTCCEEEETTTTTTTHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEECccccccCHHHHHHHHh
Confidence 9999999999998875432235777777754
No 268
>4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A
Probab=96.80 E-value=0.011 Score=56.36 Aligned_cols=136 Identities=11% Similarity=0.053 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcc---------h--h---hhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTAN---------L--R---KLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI 186 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g---------~--~---~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl 186 (328)
.+++++.++++.. ++..+-+.+..+.... . . ...+.+...+.+++||++ ++ .++.|++..
T Consensus 154 ~~~~~~~a~~~~~~G~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a---~G--~~~~l~vDa 228 (421)
T 4hnl_A 154 LDDLYHEIDRFLAAGYRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEK---YG--NQFQMLHDV 228 (421)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHH---HT--TSSEEEEEC
T ss_pred HHHHHHHHHHHHHhhHHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHH---hC--CCceEeccc
Confidence 4455555555443 6899988876533110 0 0 011223344555555554 55 688999999
Q ss_pred CCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEec
Q psy5880 187 APDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVG 266 (328)
Q Consensus 187 ~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~G 266 (328)
...++.++..++++.+ ++.++.+|- . |+.+..++..+++++.++ +||.+.-
T Consensus 229 n~~~~~~~A~~~~~~l--~~~~i~~iE-------e------------------P~~~~d~~~~~~l~~~~~--ipIa~dE 279 (421)
T 4hnl_A 229 HERLHPNQAIQFAKAA--EPYQLFFLE-------D------------------ILPPDQSHWLTQLRSQSA--TPIATGE 279 (421)
T ss_dssp TTCSCHHHHHHHHHHH--GGGCCSEEE-------C------------------CSCGGGGGGHHHHHTTCC--CCEEECT
T ss_pred cccCCHHHHHHHHHHh--hhhhhcccc-------c------------------CCcccchHHHHHHHhcCC--CCeecCc
Confidence 9999999999999999 888877661 1 112223455678888887 9999999
Q ss_pred CCCCHHHHHHHHHhc-cCeeeehhHH
Q psy5880 267 GVFSGKDAFEKIKAG-ASLVQIYTSF 291 (328)
Q Consensus 267 GI~s~~da~~~l~~G-Ad~V~vg~a~ 291 (328)
.+.+..++.++++.| +|.|++=-.-
T Consensus 280 ~~~~~~~~~~~i~~~a~d~v~~d~~~ 305 (421)
T 4hnl_A 280 LFNNPMEWQELVKNRQIDFMRAHVSQ 305 (421)
T ss_dssp TCCSGGGTHHHHHTTCCSEECCCGGG
T ss_pred ceehhHHHHHHHhcCCceEEEeCCCC
Confidence 999999999999988 8999875443
No 269
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=96.80 E-value=0.035 Score=49.93 Aligned_cols=115 Identities=15% Similarity=0.044 Sum_probs=71.1
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.++||++|-....+.+|+...++.+ .+.|.+-|++.-+...++ + ......+..+..+++..+
T Consensus 133 ~gkPVilK~G~~~t~~ei~~ave~i--~~~Gn~~i~L~erg~~y~-------------~---~~~~vdl~~i~~lk~~~~ 194 (285)
T 3sz8_A 133 AGKPVNVKKPQFMSPTQLKHVVSKC--GEVGNDRVMLCERGSSFG-------------Y---DNLVVDMLGFRQMAETTG 194 (285)
T ss_dssp TSSCEEEECCTTSCGGGTHHHHHHH--HHTTCCCEEEEECCEECS-------------S---SCEECCTTHHHHHHHHTT
T ss_pred cCCcEEEeCCCCCCHHHHHHHHHHH--HHcCCCcEEEEeCCCCCC-------------C---CcCccCHHHHHHHHHhCC
Confidence 5789999998877878888999999 889988777754433211 1 111123566777888762
Q ss_pred CCccEEEe---------------cCCCC--HHHHHHHHHhccCeeeehh------HHhhcC-----chHHHHHHHHHHHH
Q psy5880 258 GKLPIIGV---------------GGVFS--GKDAFEKIKAGASLVQIYT------SFVYHG-----PPLVTRIKSELEEL 309 (328)
Q Consensus 258 ~~ipvia~---------------GGI~s--~~da~~~l~~GAd~V~vg~------a~l~~g-----p~~~~~i~~~l~~~ 309 (328)
++||+.. ||-+. +.-+..++.+|||.++|=+ ++ .++ |+-++++.+.++..
T Consensus 195 -~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H~~pd~al-~D~~~sl~p~el~~lv~~i~~i 272 (285)
T 3sz8_A 195 -GCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRAR-CDGPSALPLHQLEGLLSQMKAI 272 (285)
T ss_dssp -SCCEEEETTTTCC---------------HHHHHHHHHHHCCSEEEEEEESCGGGCS-CSSCCCEEGGGHHHHHHHHHHH
T ss_pred -CCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEeccChhccC-CchhhccCHHHHHHHHHHHHHH
Confidence 2899872 23222 2345678889999555522 21 122 55677777766654
Q ss_pred HHH
Q psy5880 310 LQK 312 (328)
Q Consensus 310 m~~ 312 (328)
-..
T Consensus 273 ~~~ 275 (285)
T 3sz8_A 273 DDL 275 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 270
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=96.76 E-value=0.0034 Score=61.91 Aligned_cols=67 Identities=10% Similarity=0.111 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHc----CCCccEEEecCCCCHHHHHHHHH--------hccCeeeehhHHhhcCchHHHHHHHHHHHHHH
Q psy5880 244 KSTELISEMYKLT----KGKLPIIGVGGVFSGKDAFEKIK--------AGASLVQIYTSFVYHGPPLVTRIKSELEELLQ 311 (328)
Q Consensus 244 ~~l~~v~~i~~~~----~~~ipvia~GGI~s~~da~~~l~--------~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~ 311 (328)
.+++.++++++.+ ..++|+++.||| +++.+.+++. +||+.|.++++++. .++ +....+.+.+.+.
T Consensus 154 ~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~-a~d-p~~a~~~l~~~~~ 230 (540)
T 3nl6_A 154 MGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQCVSSNGKRSLDGICVVSDIIA-SLD-AAKSTKILRGLID 230 (540)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHHCBCTTSSCBCSCEEESHHHHT-CTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHhhcccccccCceEEEEeHHHhc-CCC-HHHHHHHHHHHHH
Confidence 3456666666553 124999999999 7899999998 79999999999974 344 2333344555555
Q ss_pred Hh
Q psy5880 312 KE 313 (328)
Q Consensus 312 ~~ 313 (328)
+.
T Consensus 231 ~~ 232 (540)
T 3nl6_A 231 KT 232 (540)
T ss_dssp CC
T ss_pred hC
Confidence 43
No 271
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=96.73 E-value=0.013 Score=50.68 Aligned_cols=124 Identities=11% Similarity=0.127 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
...+.++.+...+ .+.+|+-+..|+ ..+.++.+++. .. .+.+.-..-++. +-++
T Consensus 29 ~~~~~~~al~~gG--v~~iel~~k~~~------------~~~~i~~l~~~-------~~-~~~vgagtvi~~----d~~~ 82 (214)
T 1wbh_A 29 HAVPMAKALVAGG--VRVLNVTLRTEC------------AVDAIRAIAKE-------VP-EAIVGAGTVLNP----QQLA 82 (214)
T ss_dssp GHHHHHHHHHHTT--CCEEEEESCSTT------------HHHHHHHHHHH-------CT-TSEEEEESCCSH----HHHH
T ss_pred HHHHHHHHHHHcC--CCEEEEeCCChh------------HHHHHHHHHHH-------Cc-CCEEeeCEEEEH----HHHH
Confidence 4455666666555 999998655322 12344544444 21 233333333443 2346
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .++|+|+++..++. .+ +.+.++..+ ++++. |++|++++.++++.
T Consensus 83 ~A--~~aGAd~v~~p~~d---------------------------~~-v~~~~~~~g--~~~i~--G~~t~~e~~~A~~~ 128 (214)
T 1wbh_A 83 EV--TEAGAQFAISPGLT---------------------------EP-LLKAATEGT--IPLIP--GISTVSELMLGMDY 128 (214)
T ss_dssp HH--HHHTCSCEEESSCC---------------------------HH-HHHHHHHSS--SCEEE--EESSHHHHHHHHHT
T ss_pred HH--HHcCCCEEEcCCCC---------------------------HH-HHHHHHHhC--CCEEE--ecCCHHHHHHHHHC
Confidence 66 78899999744321 12 233344454 77775 49999999999999
Q ss_pred ccCeeeehhHHhhcCchHHHHHHH
Q psy5880 281 GASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 281 GAd~V~vg~a~l~~gp~~~~~i~~ 304 (328)
|||.|.+..+-...|+.+++.++.
T Consensus 129 Gad~v~~Fpa~~~gG~~~lk~i~~ 152 (214)
T 1wbh_A 129 GLKEFKFFPAEANGGVKALQAIAG 152 (214)
T ss_dssp TCCEEEETTTTTTTHHHHHHHHHT
T ss_pred CCCEEEEecCccccCHHHHHHHhh
Confidence 999999954221123566666543
No 272
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Probab=96.71 E-value=0.017 Score=52.54 Aligned_cols=85 Identities=7% Similarity=0.029 Sum_probs=52.1
Q ss_pred HHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHH---
Q psy5880 196 KDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK--- 272 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~--- 272 (328)
..+++.+ .++|++|++++.+ + +..+|+.++. -.++.++||+-..
T Consensus 161 ~~lA~~a--~~~G~dGvV~s~~-----------------------------E-~~~IR~~~~~-~fl~VTPGIr~qG~~~ 207 (303)
T 3ru6_A 161 INFSKIS--YENGLDGMVCSVF-----------------------------E-SKKIKEHTSS-NFLTLTPGIRPFGETN 207 (303)
T ss_dssp HHHHHHH--HHTTCSEEECCTT-----------------------------T-HHHHHHHSCT-TSEEEECCCCTTC---
T ss_pred HHHHHHH--HHcCCCEEEECHH-----------------------------H-HHHHHHhCCC-ccEEECCCcCcccCCc
Confidence 4566676 7899999875421 1 4567777753 4588899998221
Q ss_pred -------HHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 273 -------DAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 273 -------da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
.+.+++.+|||.+.+||++.. .++-. ...+.+.+.+.++|+
T Consensus 208 ~DQ~Rv~t~~~a~~aGAd~iVvGr~I~~-a~dp~-~a~~~i~~~i~~~~~ 255 (303)
T 3ru6_A 208 DDQKRVANLAMARENLSDYIVVGRPIYK-NENPR-AVCEKILNKIHRKNI 255 (303)
T ss_dssp -----CCSHHHHHHTTCSEEEECHHHHT-SSCHH-HHHHHHHHHHC----
T ss_pred ccccccCCHHHHHHcCCCEEEEChHHhC-CCCHH-HHHHHHHHHHHhccc
Confidence 355667899999999999964 23322 222334444555544
No 273
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=96.70 E-value=0.0013 Score=59.89 Aligned_cols=32 Identities=9% Similarity=0.048 Sum_probs=24.3
Q ss_pred ccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 260 LPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 260 ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
++|.++||| |.+.+.++.++|+|.+.+|+.+.
T Consensus 250 v~I~ASGGI-t~~ni~~~~~~GvD~i~vGs~i~ 281 (294)
T 3c2e_A 250 FLLECSGGL-NLDNLEEYLCDDIDIYSTSSIHQ 281 (294)
T ss_dssp CEEEEECCC-CC------CCCSCSEEECGGGTS
T ss_pred eEEEEECCC-CHHHHHHHHHcCCCEEEEechhc
Confidence 899999999 99999999999999999999863
No 274
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=96.69 E-value=0.0076 Score=56.47 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCC
Q psy5880 158 DQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLS 237 (328)
Q Consensus 158 ~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~s 237 (328)
+...+.++.+++. ..+++.+-+.... +..+.++.+ .++|+|.|++.... |.
T Consensus 82 e~~~~~i~~vk~~-------~~l~vga~vg~~~---~~~~~~~~l--ieaGvd~I~idta~----------------G~- 132 (366)
T 4fo4_A 82 EQQAAQVHQVKIS-------GGLRVGAAVGAAP---GNEERVKAL--VEAGVDVLLIDSSH----------------GH- 132 (366)
T ss_dssp HHHHHHHHHHHTT-------TSCCCEEECCSCT---TCHHHHHHH--HHTTCSEEEEECSC----------------TT-
T ss_pred HHHHHHHHHHHhc-------CceeEEEEeccCh---hHHHHHHHH--HhCCCCEEEEeCCC----------------CC-
Confidence 3344555555542 2345555443321 245667888 89999998774311 11
Q ss_pred CCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 238 GEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 238 g~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
.+..++.++++++.++ ++||++ |.+.|++++.++.++|||+|.+|
T Consensus 133 ----~~~~~~~I~~ik~~~p-~v~Vi~-G~v~t~e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 133 ----SEGVLQRIRETRAAYP-HLEIIG-GNVATAEGARALIEAGVSAVKVG 177 (366)
T ss_dssp ----SHHHHHHHHHHHHHCT-TCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred ----CHHHHHHHHHHHHhcC-CCceEe-eeeCCHHHHHHHHHcCCCEEEEe
Confidence 1234678889998874 488766 67899999999999999999994
No 275
>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A
Probab=96.68 E-value=0.016 Score=51.12 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=35.1
Q ss_pred HHHHHHHcCCCccEEEecCCCCHH----------HHHHHHHhccCeeeehhHHhhcCch
Q psy5880 249 ISEMYKLTKGKLPIIGVGGVFSGK----------DAFEKIKAGASLVQIYTSFVYHGPP 297 (328)
Q Consensus 249 v~~i~~~~~~~ipvia~GGI~s~~----------da~~~l~~GAd~V~vg~a~l~~gp~ 297 (328)
++++++..+ +.+++..|||+..- .+.+++++|||.+.+||+++. .++
T Consensus 173 i~~lr~~~~-~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~-a~d 229 (245)
T 1eix_A 173 AVRFKQVFG-QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQ-SVD 229 (245)
T ss_dssp HHHHHHHHC-SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHT-SSS
T ss_pred HHHHHHhcC-CCCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHHHcC-CCC
Confidence 566676664 36899999998421 366777899999999999974 344
No 276
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=96.67 E-value=0.0062 Score=53.39 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=61.2
Q ss_pred ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEe-----
Q psy5880 191 SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGV----- 265 (328)
Q Consensus 191 ~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~----- 265 (328)
+.++..++|+.+ .++|+.+|.+.+ .+.++++++.++ +||++.
T Consensus 34 ~~~~~~~~A~a~--~~~Ga~~i~~~~-----------------------------~~~i~~ir~~v~--~Pvig~~k~d~ 80 (232)
T 3igs_A 34 KPEIVAAMALAA--EQAGAVAVRIEG-----------------------------IDNLRMTRSLVS--VPIIGIIKRDL 80 (232)
T ss_dssp SHHHHHHHHHHH--HHTTCSEEEEES-----------------------------HHHHHHHHTTCC--SCEEEECBCCC
T ss_pred CcchHHHHHHHH--HHCCCeEEEECC-----------------------------HHHHHHHHHhcC--CCEEEEEeecC
Confidence 455788999999 999999986532 367899999987 999862
Q ss_pred cC--C---CCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 266 GG--V---FSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 266 GG--I---~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
|| + .+.+++.+++++|||.|.+.++.. .+|..+.++.+..
T Consensus 81 ~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~-~~p~~l~~~i~~~ 125 (232)
T 3igs_A 81 DESPVRITPFLDDVDALAQAGAAIIAVDGTAR-QRPVAVEALLARI 125 (232)
T ss_dssp SSCCCCBSCSHHHHHHHHHHTCSEEEEECCSS-CCSSCHHHHHHHH
T ss_pred CCcceEeCccHHHHHHHHHcCCCEEEECcccc-CCHHHHHHHHHHH
Confidence 33 3 466899999999999999987764 3476555554433
No 277
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=96.65 E-value=0.013 Score=54.58 Aligned_cols=146 Identities=15% Similarity=0.136 Sum_probs=85.3
Q ss_pred hHHHHHHHhhcCc-cceEEeccCCCCCc------CccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccc
Q psy5880 43 QFWLLGILKFGDV-AHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEK 115 (328)
Q Consensus 43 ~~y~~~~~~l~~~-~~~v~~n~sspN~~------gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n 115 (328)
++|.+.++.+... .|.|++|.+||.+. |-.-..+++.+.++++++++.- ..|+.+|+.++....
T Consensus 70 ~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v-------~~PV~vKiR~g~~~~-- 140 (350)
T 3b0p_A 70 KSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAV-------RVPVTVKMRLGLEGK-- 140 (350)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHC-------SSCEEEEEESCBTTC--
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHh-------CCceEEEEecCcCcc--
Confidence 4677777766544 79999999999742 2222346677888888887653 268988886554211
Q ss_pred cchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhh---hhhHHHHHHHHHHHHHHHhhcCCC-CCCEEEEeCCCCC
Q psy5880 116 KDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKL---QAKDQLKHLLKTVVETRNQLAVKP-LPPILVKIAPDLS 191 (328)
Q Consensus 116 ~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~---~~~~~~~~i~~~v~~~~~~~~~~~-~~Pv~vKl~~~~~ 191 (328)
.+.+...++++.++.++ +|+|.++-..... +.... ..+....+++..|++. . ++||++= .++.
T Consensus 141 -~~~~~~~~~a~~l~~aG--~d~I~V~~r~~~~-g~~g~~~~~~~~~~~~~i~~ik~~-------~~~iPVian--GgI~ 207 (350)
T 3b0p_A 141 -ETYRGLAQSVEAMAEAG--VKVFVVHARSALL-ALSTKANREIPPLRHDWVHRLKGD-------FPQLTFVTN--GGIR 207 (350)
T ss_dssp -CCHHHHHHHHHHHHHTT--CCEEEEECSCBC-----------CCCCCHHHHHHHHHH-------CTTSEEEEE--SSCC
T ss_pred -ccHHHHHHHHHHHHHcC--CCEEEEecCchhc-ccCcccccCCCcccHHHHHHHHHh-------CCCCeEEEE--CCcC
Confidence 12235667777777766 9999976321110 11000 0011124566666665 4 7888753 4432
Q ss_pred hhhHHHHHHHhccccCCccEEEEec
Q psy5880 192 LDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 192 ~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
. ..++.+.+ + |+|+|.+.-
T Consensus 208 s--~eda~~~l---~-GaD~V~iGR 226 (350)
T 3b0p_A 208 S--LEEALFHL---K-RVDGVMLGR 226 (350)
T ss_dssp S--HHHHHHHH---T-TSSEEEECH
T ss_pred C--HHHHHHHH---h-CCCEEEECH
Confidence 1 34444445 4 899997653
No 278
>4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens}
Probab=96.60 E-value=0.041 Score=52.77 Aligned_cols=126 Identities=10% Similarity=-0.055 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.. ++..+-+++++ +++.-.+.+++||++ ++ .+++|.+.....++.++..++++
T Consensus 202 ~e~~~~~a~~~~~~Gf~~~KlKvG~----------~~~~d~~~v~avR~a---~G--~~~~l~vDaN~~~~~~~A~~~~~ 266 (441)
T 4a35_A 202 DDTLKQLCAQALKDGWTRFKVKVGA----------DLQDDMRRCQIIRDM---IG--PEKTLMMDANQRWDVPEAVEWMS 266 (441)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSS----------CHHHHHHHHHHHHHH---HC--TTSEEEEECTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCC----------CHHHHHHHHHHHHHH---hC--CCCeEEEECCCCCCHHHHHHHHH
Confidence 3455555544433 68999888764 123334566677666 44 67899999999999888889999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHH---cCCCccEEEecCCCCHHHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKL---TKGKLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~---~~~~ipvia~GGI~s~~da~~~ 277 (328)
.+ .+.++.+|- .| ..+..++..+++++. .+ +||.+.-.+.+..++.++
T Consensus 267 ~L--~~~~~~~iE-------eP------------------~~~~d~~~~~~l~~~l~~~~--iPIa~gE~~~~~~~~~~~ 317 (441)
T 4a35_A 267 KL--AKFKPLWIE-------EP------------------TSPDDILGHATISKALVPLG--IGIATGEQCHNRVIFKQL 317 (441)
T ss_dssp HH--GGGCCSEEE-------CC------------------SCTTCHHHHHHHHHHHGGGT--CEEEECTTCCSHHHHHHH
T ss_pred hh--cccCccEEe-------CC------------------CCcccHHHHHHHHHhccCCC--CCEEeCCccccHHHHHHH
Confidence 99 888777661 11 112224555677776 55 999999999999999999
Q ss_pred HHhc-cCeeeehhHH
Q psy5880 278 IKAG-ASLVQIYTSF 291 (328)
Q Consensus 278 l~~G-Ad~V~vg~a~ 291 (328)
++.| +|.|++--.-
T Consensus 318 l~~~a~div~~d~~~ 332 (441)
T 4a35_A 318 LQAKALQFLQIDSCR 332 (441)
T ss_dssp HHTTCCSEECCCTTT
T ss_pred HHcCCCCEEEECccc
Confidence 9977 8999875443
No 279
>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp}
Probab=96.54 E-value=0.12 Score=48.54 Aligned_cols=125 Identities=12% Similarity=0.140 Sum_probs=89.5
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
++..+-+.+++.. .+.-.+.+++||++ ++ .+++|.+.....++.++..++++.+ .+.|+.+|-
T Consensus 163 G~~~~KiKvg~~~---------~~~d~~~v~avR~a---~g--~~~~l~vDaN~~~~~~~A~~~~~~l--~~~~i~~iE- 225 (381)
T 3fcp_A 163 RHRAFKLKIGARE---------LATDLRHTRAIVEA---LG--DRASIRVDVNQAWDAATGAKGCREL--AAMGVDLIE- 225 (381)
T ss_dssp --CEEEEECCSSC---------HHHHHHHHHHHHHH---TC--TTCEEEEECTTCBCHHHHHHHHHHH--HHTTCSEEE-
T ss_pred CCCEEEEecCCCC---------hHHHHHHHHHHHHH---cC--CCCeEEEECCCCCCHHHHHHHHHHH--hhcCcccee-
Confidence 5888888776421 22345566777766 34 5689999999999988888999999 888877761
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHhh
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVY 293 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l~ 293 (328)
.| ..+..++..+++++.++ +||++...+.+..|+.++++.| +|.|++--.-.
T Consensus 226 ------eP------------------~~~~d~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~- 278 (381)
T 3fcp_A 226 ------QP------------------VSAHDNAALVRLSQQIE--TAILADEAVATAYDGYQLAQQGFTGAYALKIAKA- 278 (381)
T ss_dssp ------CC------------------BCTTCHHHHHHHHHHSS--SEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHH-
T ss_pred ------CC------------------CCcccHHHHHHHHHhCC--CCEEECCCcCCHHHHHHHHHcCCCCEEEeccccc-
Confidence 11 11223566788888887 9999999999999999999976 99999876553
Q ss_pred cCchHHHHHH
Q psy5880 294 HGPPLVTRIK 303 (328)
Q Consensus 294 ~gp~~~~~i~ 303 (328)
.|..-..++.
T Consensus 279 GGit~~~~ia 288 (381)
T 3fcp_A 279 GGPNSVLALA 288 (381)
T ss_dssp TSTTHHHHHH
T ss_pred CCHHHHHHHH
Confidence 3555455543
No 280
>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}
Probab=96.52 E-value=0.0065 Score=52.90 Aligned_cols=87 Identities=21% Similarity=0.200 Sum_probs=62.4
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH-H
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG-K 272 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~-~ 272 (328)
....+++.+ .++|++|++++.+.. +.++.+|+.++ + .++.++||+-. .
T Consensus 123 ~~~~~a~~a--~~~g~~GvV~sat~p---------------------------~e~~~ir~~~~-~-~~~vtPGI~~~g~ 171 (222)
T 4dbe_A 123 FADYIKNVI--REISPKGIVVGGTKL---------------------------DHITQYRRDFE-K-MTIVSPGMGSQGG 171 (222)
T ss_dssp THHHHHHHH--HHHCCSEEEECTTCH---------------------------HHHHHHHHHCT-T-CEEEECCBSTTSB
T ss_pred HHHHHHHHH--HHhCCCEEEECCCCH---------------------------HHHHHHHHhCC-C-CEEEcCCcccCcc
Confidence 346788888 889999998775421 33567787776 3 67888999742 1
Q ss_pred HHHHHHHhccCeeeehhHHhh-cCc-hHHHHHHHHHHHHHH
Q psy5880 273 DAFEKIKAGASLVQIYTSFVY-HGP-PLVTRIKSELEELLQ 311 (328)
Q Consensus 273 da~~~l~~GAd~V~vg~a~l~-~gp-~~~~~i~~~l~~~m~ 311 (328)
+..+++++|||.+.|||++.. .+| ...+++++++++.+.
T Consensus 172 tp~~a~~~Gad~iVVGR~I~~A~dP~~aa~~i~~~i~~~~~ 212 (222)
T 4dbe_A 172 SYGDAVCAGADYEIIGRSIYNAGNPLTALRTINKIIEDKVM 212 (222)
T ss_dssp CTTHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCCEEEECHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 466777899999999999974 245 346777777766543
No 281
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1
Probab=96.51 E-value=0.0014 Score=55.38 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhc
Q psy5880 247 ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH 294 (328)
Q Consensus 247 ~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~ 294 (328)
+.++++ .+ +|||+.|+|+|.||+.+ +++||++|..++--+|+
T Consensus 142 ~~I~~v---~~--~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW~ 183 (188)
T 1vkf_A 142 KVARKI---PG--RTVIAAGLVETEEEARE-ILKHVSAISTSSRILWK 183 (188)
T ss_dssp HHHTTS---TT--SEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHHT
T ss_pred HHHHHh---cC--CCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHhC
Confidence 455555 44 99999999999999999 99999999999876664
No 282
>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A
Probab=96.47 E-value=0.15 Score=48.17 Aligned_cols=133 Identities=9% Similarity=-0.005 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhc-c-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 122 VLDSVKGILKFG-D-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 122 i~~~~~~a~~~~-~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
.+++++.++++. . ++..+-+.++ . +++.-.+.+++||++. .+++|++.....++.++...++
T Consensus 169 ~e~~~~~a~~~~~~~G~~~~K~KvG--~--------~~~~d~~~v~avR~~~------~~~~l~vDaN~~w~~~~A~~~~ 232 (398)
T 4dye_A 169 PKAMAEHAVRVVEEGGFDAVKLKGT--T--------DCAGDVAILRAVREAL------PGVNLRVDPNAAWSVPDSVRAG 232 (398)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECC--S--------CHHHHHHHHHHHHHHC------TTSEEEEECTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecC--C--------CHHHHHHHHHHHHHhC------CCCeEEeeCCCCCCHHHHHHHH
Confidence 345554444432 2 4888887765 1 1233456777777763 4789999998889988899999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+.|+.+|- .| .. .++..+++++.++ +||.+...+.+..++.++++
T Consensus 233 ~~l--~~~~i~~iE-------qP------------------~~--d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~ 281 (398)
T 4dye_A 233 IAL--EELDLEYLE-------DP------------------CV--GIEGMAQVKAKVR--IPLCTNMCVVRFEDFAPAMR 281 (398)
T ss_dssp HHH--GGGCCSEEE-------CC------------------SS--HHHHHHHHHHHCC--SCEEESSSCCSGGGHHHHHH
T ss_pred HHH--hhcCCCEEc-------CC------------------CC--CHHHHHHHHhhCC--CCEEeCCcCCCHHHHHHHHH
Confidence 999 888887772 11 11 4577788888887 99999999999999999999
Q ss_pred hc-cCeeeehhHHhhcCchHHHHH
Q psy5880 280 AG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 280 ~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
.| +|.|++--.-. .|..-..++
T Consensus 282 ~~a~d~v~~k~~~~-GGit~~~~i 304 (398)
T 4dye_A 282 LNAVDVIHGDVYKW-GGIAATKAL 304 (398)
T ss_dssp TTCCSEEEECHHHH-TSHHHHHHH
T ss_pred hCCCCEEEeCcccc-CCHHHHHHH
Confidence 87 99999876654 344444444
No 283
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=96.42 E-value=0.0072 Score=56.44 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=54.1
Q ss_pred hhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHH
Q psy5880 193 DEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK 272 (328)
Q Consensus 193 ~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~ 272 (328)
++..+.++.+ .++|+|.|++.... |++ ...++.++.+++.++ ++||++ |+|.|++
T Consensus 99 ~~~~e~~~~a--~~aGvdvI~id~a~----------------G~~-----~~~~e~I~~ir~~~~-~~~Vi~-G~V~T~e 153 (361)
T 3r2g_A 99 ENELQRAEAL--RDAGADFFCVDVAH----------------AHA-----KYVGKTLKSLRQLLG-SRCIMA-GNVATYA 153 (361)
T ss_dssp HHHHHHHHHH--HHTTCCEEEEECSC----------------CSS-----HHHHHHHHHHHHHHT-TCEEEE-EEECSHH
T ss_pred HHHHHHHHHH--HHcCCCEEEEeCCC----------------CCc-----HhHHHHHHHHHHhcC-CCeEEE-cCcCCHH
Confidence 3466788989 89999988775321 110 123578888988874 488887 6799999
Q ss_pred HHHHHHHhccCeeeeh
Q psy5880 273 DAFEKIKAGASLVQIY 288 (328)
Q Consensus 273 da~~~l~~GAd~V~vg 288 (328)
++.++.++|||+|.++
T Consensus 154 ~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 154 GADYLASCGADIIKAG 169 (361)
T ss_dssp HHHHHHHTTCSEEEEC
T ss_pred HHHHHHHcCCCEEEEc
Confidence 9999999999999985
No 284
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=96.40 E-value=0.0034 Score=56.76 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCc
Q psy5880 163 LLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLR 242 (328)
Q Consensus 163 i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~ 242 (328)
+..+++++++..+ ...+|.|=.. + +.++ +.+ .++|+|+|.+.|....
T Consensus 179 i~~av~~ar~~~~--~~~~I~VEV~---t---leea-~eA--~~aGaD~I~LDn~~~e---------------------- 225 (285)
T 1o4u_A 179 AERAVQEVRKIIP--FTTKIEVEVE---N---LEDA-LRA--VEAGADIVMLDNLSPE---------------------- 225 (285)
T ss_dssp HHHHHHHHHTTSC--TTSCEEEEES---S---HHHH-HHH--HHTTCSEEEEESCCHH----------------------
T ss_pred HHHHHHHHHHhCC--CCceEEEEeC---C---HHHH-HHH--HHcCCCEEEECCCCHH----------------------
Confidence 5556666654332 3367777432 2 3344 334 5789999988873221
Q ss_pred hHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 243 NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 243 ~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
.-.+.++.++... .++|+.++||| |.+.+.++.++|+|.+.+|+...
T Consensus 226 -~l~~av~~l~~~~-~~v~ieASGGI-t~eni~~~a~tGVD~IsvGslt~ 272 (285)
T 1o4u_A 226 -EVKDISRRIKDIN-PNVIVEVSGGI-TEENVSLYDFETVDVISSSRLTL 272 (285)
T ss_dssp -HHHHHHHHHHHHC-TTSEEEEEECC-CTTTGGGGCCTTCCEEEEGGGTS
T ss_pred -HHHHHHHHhhccC-CCceEEEECCC-CHHHHHHHHHcCCCEEEEeHHHc
Confidence 0112333343322 25999999999 68999999999999999999764
No 285
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=96.36 E-value=0.013 Score=53.00 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCc
Q psy5880 163 LLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLR 242 (328)
Q Consensus 163 i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~ 242 (328)
+.++++++++..+ ..|+.|-+. + +.++ +.+ .++|+|.|.+.|....
T Consensus 181 i~~av~~ar~~~~---~~~I~Vev~---t---~eea-~ea--l~aGaD~I~LDn~~~~---------------------- 226 (284)
T 1qpo_A 181 VVDALRAVRNAAP---DLPCEVEVD---S---LEQL-DAV--LPEKPELILLDNFAVW---------------------- 226 (284)
T ss_dssp HHHHHHHHHHHCT---TSCEEEEES---S---HHHH-HHH--GGGCCSEEEEETCCHH----------------------
T ss_pred HHHHHHHHHHhCC---CCCEEEEeC---C---HHHH-HHH--HHcCCCEEEECCCCHH----------------------
Confidence 3445555544322 227777654 2 3343 444 5799999988874321
Q ss_pred hHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 243 NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 243 ~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
.-.+.++.+++.. .++++.++||| |++.+.++.++|+|.+.+|+..
T Consensus 227 -~~~~~v~~l~~~~-~~v~ieaSGGI-t~~~i~~~a~tGVD~isvG~l~ 272 (284)
T 1qpo_A 227 -QTQTAVQRRDSRA-PTVMLESSGGL-SLQTAATYAETGVDYLAVGALT 272 (284)
T ss_dssp -HHHHHHHHHHHHC-TTCEEEEESSC-CTTTHHHHHHTTCSEEECGGGT
T ss_pred -HHHHHHHHhhccC-CCeEEEEECCC-CHHHHHHHHhcCCCEEEECHHH
Confidence 1123444555433 25899999999 7899999999999999999965
No 286
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=96.33 E-value=0.022 Score=52.25 Aligned_cols=87 Identities=23% Similarity=0.394 Sum_probs=59.6
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+++|.+.+++...+ -++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 29 iD~~~l~~lv~~l--i~~Gv~gl~v~GtTGE~~------------~Ls----~~Er~~v~~~~~~~~~grvpviaGvg~~ 90 (318)
T 3qfe_A 29 LDLASQERYYAYL--ARSGLTGLVILGTNAEAF------------LLT----REERAQLIATARKAVGPDFPIMAGVGAH 90 (318)
T ss_dssp ECHHHHHHHHHHH--HTTTCSEEEESSGGGTGG------------GSC----HHHHHHHHHHHHHHHCTTSCEEEECCCS
T ss_pred CCHHHHHHHHHHH--HHcCCCEEEeCccccChh------------hCC----HHHHHHHHHHHHHHhCCCCcEEEeCCCC
Confidence 4556688899999 899999999988775421 011 1223456666777777789998655555
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYH 294 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~ 294 (328)
+-+++.+.. ++|||+|++-...++.
T Consensus 91 ~t~~ai~la~~a~~~Gadavlv~~P~y~~ 119 (318)
T 3qfe_A 91 STRQVLEHINDASVAGANYVLVLPPAYFG 119 (318)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCCC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 666665543 4899999999986553
No 287
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=96.30 E-value=0.019 Score=51.77 Aligned_cols=90 Identities=14% Similarity=0.220 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCc
Q psy5880 163 LLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLR 242 (328)
Q Consensus 163 i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~ 242 (328)
+-++|+++++. . ...|+.|=... +.++.+ + .++|+|.|-+.|...
T Consensus 185 i~~Av~~ar~~-~--~~~~IeVEv~t------l~ea~e-A--l~aGaD~I~LDn~~~----------------------- 229 (287)
T 3tqv_A 185 IAKAVTKAKKL-D--SNKVVEVEVTN------LDELNQ-A--IAAKADIVMLDNFSG----------------------- 229 (287)
T ss_dssp HHHHHHHHHHH-C--TTSCEEEEESS------HHHHHH-H--HHTTCSEEEEESCCH-----------------------
T ss_pred HHHHHHHHHhh-C--CCCcEEEEeCC------HHHHHH-H--HHcCCCEEEEcCCCH-----------------------
Confidence 44445444332 2 45677774322 344433 4 478999998877321
Q ss_pred hHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 243 NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 243 ~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
+.++++.+.+++++++.++||| |.+.+.++.++|+|.+.+|+...
T Consensus 230 ----~~l~~av~~~~~~v~ieaSGGI-t~~~i~~~a~tGVD~IsvGalt~ 274 (287)
T 3tqv_A 230 ----EDIDIAVSIARGKVALEVSGNI-DRNSIVAIAKTGVDFISVGAITK 274 (287)
T ss_dssp ----HHHHHHHHHHTTTCEEEEESSC-CTTTHHHHHTTTCSEEECSHHHH
T ss_pred ----HHHHHHHHhhcCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence 3345555555556999999999 78899999999999999987653
No 288
>4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans}
Probab=96.27 E-value=0.12 Score=48.70 Aligned_cols=144 Identities=7% Similarity=-0.034 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhc-ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFG-DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~-~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++. .++..+-+.++++. ++.-.+.+++||++.. + .+++|.+.....++.++...+++
T Consensus 165 ~e~~~~~a~~~~~~G~~~~KlKvg~~~---------~~~d~~~v~avR~a~g--g--~~~~L~vDaN~~w~~~~A~~~~~ 231 (391)
T 4e8g_A 165 PDEIARIAAEKVAEGFPRLQIKIGGRP---------VEIDIETVRKVWERIR--G--TGTRLAVDGNRSLPSRDALRLSR 231 (391)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCSSC---------HHHHHHHHHHHHHHHT--T--TTCEEEEECTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEcCCCCC---------HHHHHHHHHHHHHHhC--C--CCCeEEEeCCCCCCHHHHHHHHH
Confidence 344455444443 26899998887532 2334566777776631 0 36799999999999888889999
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.++ +| ..| . ..++..+++++.++ +||.+.-.+.+..|+.++++.
T Consensus 232 ~L--~~~~i-~i-------EeP-------------~-------~~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~~~~ 279 (391)
T 4e8g_A 232 EC--PEIPF-VL-------EQP-------------C-------NTLEEIAAIRGRVQ--HGIYLDESGEDLSTVIRAAGQ 279 (391)
T ss_dssp HC--TTSCE-EE-------ESC-------------S-------SSHHHHHHHGGGCC--SCEEESTTCCSHHHHHHHHHT
T ss_pred HH--hhcCe-EE-------ecC-------------C-------ccHHHHHHHHhhCC--CCEEeCCCCCCHHHHHHHHHc
Confidence 99 77776 55 111 0 02456678888887 999999999999999999998
Q ss_pred c-cCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCC
Q psy5880 281 G-ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 281 G-Ad~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
| +|.|++--.-. .|..-..++ ..+.+.+|+
T Consensus 280 ~a~d~v~ik~~~~-GGit~~~~i----a~~A~~~gi 310 (391)
T 4e8g_A 280 GLCDGFGMKLTRI-GGLQQMAAF----RDICEARAL 310 (391)
T ss_dssp TCCSEEEEEHHHH-TSHHHHHHH----HHHHHHTTC
T ss_pred CCCCEEEeCcccc-CCHHHHHHH----HHHHHHcCC
Confidence 7 89999876553 344434443 233444554
No 289
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=96.27 E-value=0.59 Score=41.78 Aligned_cols=111 Identities=17% Similarity=0.116 Sum_probs=70.4
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecC-CccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNT-TVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT 256 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~-~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~ 256 (328)
.++||++|-+...+.+++...++.+ ...|..-+++.-| +.. |.+.+.....+..+..+++..
T Consensus 144 ~~kPV~lk~G~~~t~~ei~~Ave~i--~~~Gn~~i~L~~Rg~~~---------------yp~y~~~~vdl~~i~~lk~~~ 206 (276)
T 1vs1_A 144 SGKPVLLKRGFGNTVEELLAAAEYI--LLEGNWQVVLVERGIRT---------------FEPSTRFTLDVAAVAVLKEAT 206 (276)
T ss_dssp HTCCEEEECCTTCCHHHHHHHHHHH--HHTTCCCEEEEECCBCC---------------SCCSSSSBCBHHHHHHHHHHB
T ss_pred cCCeEEEcCCCCCCHHHHHHHHHHH--HHcCCCeEEEEeCCcCC---------------CCCcCcchhCHHHHHHHHHHh
Confidence 4789999998887888899999988 8889755555332 111 111111224567778888877
Q ss_pred CCCccEEE-e---cCCCC--HHHHHHHHHhccCeeeehhHH-----hhc-----CchHHHHHHHHHH
Q psy5880 257 KGKLPIIG-V---GGVFS--GKDAFEKIKAGASLVQIYTSF-----VYH-----GPPLVTRIKSELE 307 (328)
Q Consensus 257 ~~~ipvia-~---GGI~s--~~da~~~l~~GAd~V~vg~a~-----l~~-----gp~~~~~i~~~l~ 307 (328)
+ +||++ + +|.++ ..-+..++.+||++++|=+-+ +.+ .|+-++++.+.++
T Consensus 207 ~--lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~~~d~a~~D~~~sl~p~~~~~lv~~i~ 271 (276)
T 1vs1_A 207 H--LPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHPNPEEALSDAKQQLTPGEFARLMGELR 271 (276)
T ss_dssp S--SCEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCSSGGGCSSCGGGCBCHHHHHHHHHHHH
T ss_pred C--CCEEEeCCCCCCccchHHHHHHHHHHcCCCEEEEEecCCcccCCCchhcCCCHHHHHHHHHHHH
Confidence 6 89865 2 25444 455667788999977765533 112 2455666665554
No 290
>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A
Probab=96.24 E-value=0.2 Score=47.11 Aligned_cols=138 Identities=9% Similarity=0.025 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.+ ++..+-+.+++|... .+++.-.+.+++||++ ++ .+++|.+.....++.++..++++
T Consensus 146 ~e~~~~~a~~~~~~G~~~~K~Kvg~~~~~-----~~~~~d~~~v~avR~a---~G--~~~~L~vDaN~~~~~~~A~~~~~ 215 (386)
T 3fv9_G 146 PEAMRAKVARHRAQGFKGHSIKIGASEAE-----GGPALDAERITACLAD---RQ--PGEWYLADANNGLTVEHALRMLS 215 (386)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCCTTT-----THHHHHHHHHHHHTTT---CC--TTCEEEEECTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccCCCCC-----CCHHHHHHHHHHHHHH---cC--CCCeEEEECCCCCCHHHHHHHHH
Confidence 3455555554432 699999999876421 1233344555555554 44 57899999999999888888888
Q ss_pred Hhccc-cCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 201 VVLDS-KCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 201 ~l~~~-~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
.+ . +.++ +| ..| + . .++..+++++.++ +||.+...+.+..++.++++
T Consensus 216 ~l--~~~~~i-~i-------EeP-------------~-----~--~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~~~ 263 (386)
T 3fv9_G 216 LL--PPGLDI-VL-------EAP-------------C-----A--SWAETKSLRARCA--LPLLLDELIQTETDLIAAIR 263 (386)
T ss_dssp HS--CSSCCC-EE-------ECC-------------C-----S--SHHHHHHHHTTCC--SCEEESTTCCSHHHHHHHHH
T ss_pred Hh--hccCCc-EE-------ecC-------------C-----C--CHHHHHHHHhhCC--CCEEeCCCcCCHHHHHHHHH
Confidence 77 3 2233 33 111 1 1 2456678888877 99999999999999999999
Q ss_pred hc-cCeeeehhHHhhcCchHHHHH
Q psy5880 280 AG-ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 280 ~G-Ad~V~vg~a~l~~gp~~~~~i 302 (328)
.| +|.|++--... .|..-..++
T Consensus 264 ~~a~d~v~~k~~~~-GGit~~~~i 286 (386)
T 3fv9_G 264 DDLCDGVGLKVSKQ-GGITPMLRQ 286 (386)
T ss_dssp TTCCSEEEEEHHHH-TSHHHHHHH
T ss_pred hCCCCEEEECcccc-CCHHHHHHH
Confidence 87 99999876553 344434443
No 291
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=96.24 E-value=0.036 Score=50.62 Aligned_cols=90 Identities=13% Similarity=0.254 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcC
Q psy5880 162 HLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPL 241 (328)
Q Consensus 162 ~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~ 241 (328)
.+.++++++++.. ...|+.|=+.. +.++.+ + .++|+|+|-+.|..
T Consensus 217 ~i~~Av~~ar~~~---p~~kIeVEVdt------ldea~e-A--l~aGaD~I~LDn~~----------------------- 261 (320)
T 3paj_A 217 GIRQAISTAKQLN---PGKPVEVETET------LAELEE-A--ISAGADIIMLDNFS----------------------- 261 (320)
T ss_dssp SHHHHHHHHHHHS---TTSCEEEEESS------HHHHHH-H--HHTTCSEEEEESCC-----------------------
T ss_pred CHHHHHHHHHHhC---CCCeEEEEECC------HHHHHH-H--HHcCCCEEEECCCC-----------------------
Confidence 3455555554432 34576664432 334433 4 47899999887632
Q ss_pred chHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 242 RNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 242 ~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
.+.++++.+.++++++|.++||| +.+.+.++.++|+|.+.+|+..
T Consensus 262 ----~~~l~~av~~l~~~v~ieaSGGI-t~~~I~~~a~tGVD~isvGalt 306 (320)
T 3paj_A 262 ----LEMMREAVKINAGRAALENSGNI-TLDNLKECAETGVDYISVGALT 306 (320)
T ss_dssp ----HHHHHHHHHHHTTSSEEEEESSC-CHHHHHHHHTTTCSEEECTHHH
T ss_pred ----HHHHHHHHHHhCCCCeEEEECCC-CHHHHHHHHHcCCCEEEECcee
Confidence 24455555556567999999999 5889999999999999999864
No 292
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=96.18 E-value=0.036 Score=50.31 Aligned_cols=88 Identities=23% Similarity=0.321 Sum_probs=61.7
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 25 iD~~~l~~lv~~l--i~~Gv~gl~~~GttGE~~------------~Ls----~~Er~~v~~~~~~~~~grvpviaGvg~~ 86 (297)
T 3flu_A 25 IHYEQLRDLIDWH--IENGTDGIVAVGTTGESA------------TLS----VEEHTAVIEAVVKHVAKRVPVIAGTGAN 86 (297)
T ss_dssp BCHHHHHHHHHHH--HHTTCCEEEESSTTTTGG------------GSC----HHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEeCccccCcc------------cCC----HHHHHHHHHHHHHHhCCCCcEEEeCCCc
Confidence 4556688899999 899999999888765421 011 1223456666777777789999766656
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhcCc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYHGP 296 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~gp 296 (328)
+-+++.+.. ++|||+|++....++. |
T Consensus 87 ~t~~ai~la~~a~~~Gadavlv~~P~y~~-~ 116 (297)
T 3flu_A 87 NTVEAIALSQAAEKAGADYTLSVVPYYNK-P 116 (297)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSC-C
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCC-C
Confidence 666665543 4899999999988643 5
No 293
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=96.17 E-value=0.035 Score=48.37 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=41.8
Q ss_pred cCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHH
Q psy5880 256 TKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQ 311 (328)
Q Consensus 256 ~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~ 311 (328)
+..+++|+..|||++..++..+...|+|++-||+++|.. ++ +.++.+++...|.
T Consensus 170 ~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a-~~-~~~~i~~l~~~~~ 223 (226)
T 1w0m_A 170 HFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKA-KD-PYAKIVELAKPLS 223 (226)
T ss_dssp HCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTC-SS-HHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCC-cC-HHHHHHHHHHHHH
Confidence 334699999999999999999999999999999999842 34 4444445544443
No 294
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=96.17 E-value=0.034 Score=50.36 Aligned_cols=88 Identities=16% Similarity=0.311 Sum_probs=61.9
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ -++ ...-.+.++.+.+.+++++|||+.-|-.
T Consensus 20 iD~~~l~~lv~~l--i~~Gv~gl~v~GttGE~~------------~Lt----~~Er~~v~~~~~~~~~grvpviaGvg~~ 81 (292)
T 3daq_A 20 VNLEALKAHVNFL--LENNAQAIIVNGTTAESP------------TLT----TDEKELILKTVIDLVDKRVPVIAGTGTN 81 (292)
T ss_dssp ECHHHHHHHHHHH--HHTTCCEEEESSGGGTGG------------GSC----HHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccccc------------cCC----HHHHHHHHHHHHHHhCCCCcEEEeCCcc
Confidence 4556688899999 899999999888765421 011 1122456666677777789999776666
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhcCc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYHGP 296 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~gp 296 (328)
+-+++.+.. ++|||+|++....++. |
T Consensus 82 ~t~~ai~la~~a~~~Gadavlv~~P~y~~-~ 111 (292)
T 3daq_A 82 DTEKSIQASIQAKALGADAIMLITPYYNK-T 111 (292)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCCSSC-C
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCCCCC-C
Confidence 777766543 4899999999987643 5
No 295
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=96.15 E-value=0.027 Score=51.35 Aligned_cols=87 Identities=18% Similarity=0.266 Sum_probs=61.8
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 33 iD~~~l~~lv~~l--i~~Gv~gi~v~GttGE~~------------~Lt----~~Er~~v~~~~~~~~~grvpviaGvg~~ 94 (304)
T 3l21_A 33 LDTATAARLANHL--VDQGCDGLVVSGTTGESP------------TTT----DGEKIELLRAVLEAVGDRARVIAGAGTY 94 (304)
T ss_dssp BCHHHHHHHHHHH--HHTTCSEEEESSTTTTGG------------GSC----HHHHHHHHHHHHHHHTTTSEEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEeCccccchh------------hCC----HHHHHHHHHHHHHHhCCCCeEEEeCCCC
Confidence 5566788899999 899999999888775421 011 1223456667777777789999766666
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYH 294 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~ 294 (328)
+-+++.+.. ++|||+|++....++.
T Consensus 95 ~t~~ai~la~~a~~~Gadavlv~~P~y~~ 123 (304)
T 3l21_A 95 DTAHSIRLAKACAAEGAHGLLVVTPYYSK 123 (304)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCCSSC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 667766544 4899999999988643
No 296
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=96.15 E-value=0.018 Score=50.25 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=59.8
Q ss_pred ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEec----
Q psy5880 191 SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVG---- 266 (328)
Q Consensus 191 ~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~G---- 266 (328)
+.++..++|+.+ .++|+.+|.+.+ .+.++++|+.++ +||++.-
T Consensus 34 ~~~~~~~~A~a~--~~~Ga~~i~~~~-----------------------------~~~i~~ir~~v~--~Pvig~~k~~~ 80 (229)
T 3q58_A 34 KPEIVAAMAQAA--ASAGAVAVRIEG-----------------------------IENLRTVRPHLS--VPIIGIIKRDL 80 (229)
T ss_dssp SHHHHHHHHHHH--HHTTCSEEEEES-----------------------------HHHHHHHGGGCC--SCEEEECBCCC
T ss_pred CcchHHHHHHHH--HHCCCcEEEECC-----------------------------HHHHHHHHHhcC--CCEEEEEeecC
Confidence 455788999999 999999997532 367899999987 9998632
Q ss_pred -C--C---CCHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 267 -G--V---FSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 267 -G--I---~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
| + .+.+++.+++++|||.|.+..+.. ..|..+.++.+.
T Consensus 81 ~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~-~~p~~l~~~i~~ 124 (229)
T 3q58_A 81 TGSPVRITPYLQDVDALAQAGADIIAFDASFR-SRPVDIDSLLTR 124 (229)
T ss_dssp SSCCCCBSCSHHHHHHHHHHTCSEEEEECCSS-CCSSCHHHHHHH
T ss_pred CCCceEeCccHHHHHHHHHcCCCEEEECcccc-CChHHHHHHHHH
Confidence 2 2 356799999999999999887754 247555554443
No 297
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=96.15 E-value=0.045 Score=50.67 Aligned_cols=156 Identities=13% Similarity=0.035 Sum_probs=84.8
Q ss_pred ChhhHHHHHHHhHHHHHHHhhcC-ccceEEeccC---------CCCCcCccCC------Cc-hHHHHHHHHHHHHHhhhh
Q psy5880 32 SSFARMRAWVLQFWLLGILKFGD-VAHYFVVNVS---------SPNTANLRKL------QA-KDQLKHLLKTVVETRNQL 94 (328)
Q Consensus 32 ~~~~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~s---------spN~~gl~~~------~~-~~~L~~ll~~v~~~~~~~ 94 (328)
.....+. .++++|.+.++.+.. -.|.|++|.+ ||++- .+.+ .+ ..-+.+++++|++.-
T Consensus 134 mt~~eI~-~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N-~R~D~yGGslenR~r~~~eiv~avr~~v--- 208 (340)
T 3gr7_A 134 MTKADIE-ETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSN-RRQDEYGGSPENRYRFLGEVIDAVREVW--- 208 (340)
T ss_dssp CCHHHHH-HHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTC-CCCSTTSSSHHHHHHHHHHHHHHHHHHC---
T ss_pred CCHHHHH-HHHHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccC-cCCCcccCCHHHHHHHHHHHHHHHHHhc---
Confidence 3345554 466889988886533 2589999987 58652 1222 21 122455666665553
Q ss_pred cCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhh
Q psy5880 95 ALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL 174 (328)
Q Consensus 95 ~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~ 174 (328)
..|+.+|+.++=.. ....+.++..++++.++.++ +|+|++....... ......+....++++.|++.
T Consensus 209 ----~~pv~vRls~~~~~-~~g~~~~~~~~la~~L~~~G--vd~i~vs~g~~~~--~~~~~~~~~~~~~~~~ik~~---- 275 (340)
T 3gr7_A 209 ----DGPLFVRISASDYH-PDGLTAKDYVPYAKRMKEQG--VDLVDVSSGAIVP--ARMNVYPGYQVPFAELIRRE---- 275 (340)
T ss_dssp ----CSCEEEEEESCCCS-TTSCCGGGHHHHHHHHHHTT--CCEEEEECCCSSC--CCCCCCTTTTHHHHHHHHHH----
T ss_pred ----CCceEEEecccccc-CCCCCHHHHHHHHHHHHHcC--CCEEEEecCCccC--CCCCCCccccHHHHHHHHHH----
Confidence 36899999874111 11112345566666666666 9999875321010 00000122234566777776
Q ss_pred cCCCCCCEEEEeCCCCChhhHHHHHHHhccccCC-ccEEEEe
Q psy5880 175 AVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCK-VDGLIVS 215 (328)
Q Consensus 175 ~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G-~d~i~~~ 215 (328)
.++||++= .++.. ... +..+ .+.| +|+|.+.
T Consensus 276 ---~~iPVi~~--GgI~s--~e~-a~~~--L~~G~aD~V~iG 307 (340)
T 3gr7_A 276 ---ADIPTGAV--GLITS--GWQ-AEEI--LQNGRADLVFLG 307 (340)
T ss_dssp ---TTCCEEEE--SSCCC--HHH-HHHH--HHTTSCSEEEEC
T ss_pred ---cCCcEEee--CCCCC--HHH-HHHH--HHCCCeeEEEec
Confidence 67898763 23321 223 3334 4566 9988654
No 298
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=96.14 E-value=0.037 Score=50.10 Aligned_cols=89 Identities=24% Similarity=0.275 Sum_probs=61.0
Q ss_pred CChhhHHHHHHHhcccc-CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCC
Q psy5880 190 LSLDEKKDIADVVLDSK-CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGV 268 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~-~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI 268 (328)
++.+.+.++++.+ .+ .|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=
T Consensus 21 iD~~~l~~lv~~l--i~~~Gv~gl~~~GttGE~~------------~Ls----~~Er~~v~~~~~~~~~grvpviaGvg~ 82 (293)
T 1f6k_A 21 INEKGLRQIIRHN--IDKMKVDGLYVGGSTGENF------------MLS----TEEKKEIFRIAKDEAKDQIALIAQVGS 82 (293)
T ss_dssp BCHHHHHHHHHHH--HHTSCCSEEEESSGGGTGG------------GSC----HHHHHHHHHHHHHHHTTSSEEEEECCC
T ss_pred cCHHHHHHHHHHH--HhhCCCcEEEeCccccchh------------hCC----HHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 4556688899998 88 9999999888765421 011 112345666667777778999866555
Q ss_pred CCHHHHHHHH----HhccCeeeehhHHhhcCch
Q psy5880 269 FSGKDAFEKI----KAGASLVQIYTSFVYHGPP 297 (328)
Q Consensus 269 ~s~~da~~~l----~~GAd~V~vg~a~l~~gp~ 297 (328)
.+-+++.+.. ++|||+|++....++. |.
T Consensus 83 ~~t~~ai~la~~a~~~Gadavlv~~P~y~~-~~ 114 (293)
T 1f6k_A 83 VNLKEAVELGKYATELGYDCLSAVTPFYYK-FS 114 (293)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEECCCSSC-CC
T ss_pred CCHHHHHHHHHHHHhcCCCEEEECCCCCCC-CC
Confidence 5666665543 4799999999988643 53
No 299
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=96.14 E-value=0.023 Score=51.46 Aligned_cols=89 Identities=11% Similarity=0.170 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCc
Q psy5880 163 LLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLR 242 (328)
Q Consensus 163 i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~ 242 (328)
+-++++++++.. ...|+.|-+.. +.++.+ + .++|+|.|-+.|...
T Consensus 196 i~~Av~~~r~~~---p~~~ieVEvdt------lde~~e-A--l~aGaD~I~LDn~~~----------------------- 240 (298)
T 3gnn_A 196 VGEALDAAFALN---AEVPVQIEVET------LDQLRT-A--LAHGARSVLLDNFTL----------------------- 240 (298)
T ss_dssp HHHHHHHHHHHC-----CCCEEEESS------HHHHHH-H--HHTTCEEEEEESCCH-----------------------
T ss_pred HHHHHHHHHHhC---CCCCEEEEeCC------HHHHHH-H--HHcCCCEEEECCCCH-----------------------
Confidence 445555554332 23555555322 344433 4 478999998877321
Q ss_pred hHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 243 NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 243 ~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
+.++++.+.+.+++++.++||| +.+.+.++.++|+|.+.+|+..
T Consensus 241 ----~~l~~av~~i~~~v~ieaSGGI-~~~~i~~~a~tGVD~isvG~lt 284 (298)
T 3gnn_A 241 ----DMMRDAVRVTEGRAVLEVSGGV-NFDTVRAIAETGVDRISIGALT 284 (298)
T ss_dssp ----HHHHHHHHHHTTSEEEEEESSC-STTTHHHHHHTTCSEEECGGGG
T ss_pred ----HHHHHHHHHhCCCCeEEEEcCC-CHHHHHHHHHcCCCEEEECCee
Confidence 3344443434456999999999 7888999999999999999865
No 300
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=96.13 E-value=0.029 Score=51.35 Aligned_cols=88 Identities=20% Similarity=0.328 Sum_probs=61.8
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 41 iD~~~l~~lv~~l--i~~Gv~Gl~v~GtTGE~~------------~Ls----~~Er~~v~~~~v~~~~grvpViaGvg~~ 102 (314)
T 3qze_A 41 LDWDSLAKLVDFH--LQEGTNAIVAVGTTGESA------------TLD----VEEHIQVIRRVVDQVKGRIPVIAGTGAN 102 (314)
T ss_dssp BCHHHHHHHHHHH--HHHTCCEEEESSGGGTGG------------GCC----HHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccChh------------hCC----HHHHHHHHHHHHHHhCCCCcEEEeCCCc
Confidence 4556688899999 899999999888765421 011 1123456666677777789999766666
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhcCc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYHGP 296 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~gp 296 (328)
+-+++.+.. ++|||+|++....++. |
T Consensus 103 st~eai~la~~A~~~Gadavlv~~P~y~~-~ 132 (314)
T 3qze_A 103 STREAVALTEAAKSGGADACLLVTPYYNK-P 132 (314)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSC-C
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCC-C
Confidence 666666544 4899999999988643 5
No 301
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=96.12 E-value=0.035 Score=50.46 Aligned_cols=87 Identities=11% Similarity=0.260 Sum_probs=59.5
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 30 iD~~~l~~lv~~l--i~~Gv~gl~v~GtTGE~~------------~Ls----~eEr~~v~~~~~~~~~grvpViaGvg~~ 91 (301)
T 1xky_A 30 IDFAKTTKLVNYL--IDNGTTAIVVGGTTGESP------------TLT----SEEKVALYRHVVSVVDKRVPVIAGTGSN 91 (301)
T ss_dssp BCHHHHHHHHHHH--HHTTCCEEEESSTTTTGG------------GSC----HHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccChh------------hCC----HHHHHHHHHHHHHHhCCCceEEeCCCCC
Confidence 4556688899999 899999999888765421 011 1123456666677777789998655555
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYH 294 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~ 294 (328)
+-+++.+.. ++|||+|++....++.
T Consensus 92 ~t~~ai~la~~A~~~Gadavlv~~P~y~~ 120 (301)
T 1xky_A 92 NTHASIDLTKKATEVGVDAVMLVAPYYNK 120 (301)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 555555433 4799999999988643
No 302
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=96.11 E-value=0.48 Score=43.86 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=74.8
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.++||++|-....+.+++...++.+ ...|-.-+++.-+... .|.++......+..+..+++...
T Consensus 212 ~~kPVilk~G~~~tl~ei~~Ave~i--~~~GN~~viLceRG~~--------------typ~~~~~~vdl~ai~~lk~~~~ 275 (350)
T 1vr6_A 212 YNKPVLLKRGFMNTIEEFLLSAEYI--ANSGNTKIILCERGIR--------------TFEKATRNTLDISAVPIIRKESH 275 (350)
T ss_dssp TCSCEEEECCTTCCHHHHHHHHHHH--HHTTCCCEEEEECCBC--------------CSCCSSSSBCCTTHHHHHHHHBS
T ss_pred cCCcEEEcCCCCCCHHHHHHHHHHH--HHCCCCeEEEEeCCCC--------------CCCCcChhhhhHHHHHHHHHhhC
Confidence 5799999998887888899999988 8889866666421110 01111112234566777888776
Q ss_pred CCccEEE-e---cCCCC--HHHHHHHHHhccCeeeehhHH-----hhc-----CchHHHHHHHHHHHHHHHhC
Q psy5880 258 GKLPIIG-V---GGVFS--GKDAFEKIKAGASLVQIYTSF-----VYH-----GPPLVTRIKSELEELLQKEG 314 (328)
Q Consensus 258 ~~ipvia-~---GGI~s--~~da~~~l~~GAd~V~vg~a~-----l~~-----gp~~~~~i~~~l~~~m~~~g 314 (328)
+||++ + +|-++ ..-+..++.+||+++++=+-+ +.+ .|+-++++.+.++..-...|
T Consensus 276 --lpVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~~pd~al~D~~~sL~p~e~~~lv~~ir~i~~alg 346 (350)
T 1vr6_A 276 --LPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALG 346 (350)
T ss_dssp --SCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGCSSCGGGCBCHHHHHHHHHHHHHHHHHHT
T ss_pred --CCEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcccCCCchhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 89876 2 35443 555667788999977765432 112 35667777777665544333
No 303
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=96.11 E-value=0.029 Score=50.69 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCc
Q psy5880 163 LLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLR 242 (328)
Q Consensus 163 i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~ 242 (328)
+-++|+++++.. ...|+.|=... +.++.++ .++|+|.|-+-|...
T Consensus 194 i~~Av~~ar~~~---p~~kIeVEv~t------l~e~~eA---l~aGaDiImLDn~s~----------------------- 238 (300)
T 3l0g_A 194 ITLAIQRLRKNL---KNEYIAIECDN------ISQVEES---LSNNVDMILLDNMSI----------------------- 238 (300)
T ss_dssp HHHHHHHHHHHS---SSCCEEEEESS------HHHHHHH---HHTTCSEEEEESCCH-----------------------
T ss_pred HHHHHHHHHHhC---CCCCEEEEECC------HHHHHHH---HHcCCCEEEECCCCH-----------------------
Confidence 445555554332 34566664432 4454444 478999998877321
Q ss_pred hHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 243 NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 243 ~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
+.++++.+.+++++.+.++||| |.+.+.++.++|+|.+.+|+..
T Consensus 239 ----~~l~~av~~~~~~v~leaSGGI-t~~~i~~~A~tGVD~IsvGalt 282 (300)
T 3l0g_A 239 ----SEIKKAVDIVNGKSVLEVSGCV-NIRNVRNIALTGVDYISIGCIT 282 (300)
T ss_dssp ----HHHHHHHHHHTTSSEEEEESSC-CTTTHHHHHTTTCSEEECGGGT
T ss_pred ----HHHHHHHHhhcCceEEEEECCC-CHHHHHHHHHcCCCEEEeCccc
Confidence 3345444455557999999999 7889999999999999999754
No 304
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=96.10 E-value=0.047 Score=49.46 Aligned_cols=89 Identities=15% Similarity=0.205 Sum_probs=61.2
Q ss_pred CCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEec
Q psy5880 187 APDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVG 266 (328)
Q Consensus 187 ~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~G 266 (328)
...++.+.+.++++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-
T Consensus 15 dg~iD~~~l~~lv~~l--i~~Gv~gl~~~GttGE~~------------~Ls----~~Er~~v~~~~~~~~~grvpviaGv 76 (294)
T 2ehh_A 15 EGEVDYEALGNLIEFH--VDNGTDAILVCGTTGESP------------TLT----FEEHEKVIEFAVKRAAGRIKVIAGT 76 (294)
T ss_dssp TTEECHHHHHHHHHHH--HTTTCCEEEESSTTTTGG------------GSC----HHHHHHHHHHHHHHHTTSSEEEEEC
T ss_pred CCCcCHHHHHHHHHHH--HHCCCCEEEECccccChh------------hCC----HHHHHHHHHHHHHHhCCCCcEEEec
Confidence 3446666788999999 899999999888765421 011 1123456666677777789998655
Q ss_pred CCCCHHHHHHHH----HhccCeeeehhHHhh
Q psy5880 267 GVFSGKDAFEKI----KAGASLVQIYTSFVY 293 (328)
Q Consensus 267 GI~s~~da~~~l----~~GAd~V~vg~a~l~ 293 (328)
|=.+-+++.+.. ++|||+|++....++
T Consensus 77 g~~~t~~ai~la~~A~~~Gadavlv~~P~y~ 107 (294)
T 2ehh_A 77 GGNATHEAVHLTAHAKEVGADGALVVVPYYN 107 (294)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSEEEEECCCSS
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 555556555433 479999999998864
No 305
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=96.09 E-value=0.029 Score=51.05 Aligned_cols=87 Identities=21% Similarity=0.290 Sum_probs=59.4
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 29 iD~~~l~~lv~~l--i~~Gv~Gl~v~GtTGE~~------------~Ls----~eEr~~v~~~~~~~~~grvpViaGvg~~ 90 (303)
T 2wkj_A 29 LDKASLRRLVQFN--IQQGIDGLYVGGSTGEAF------------VQS----LSEREQVLEIVAEEAKGKIKLIAHVGCV 90 (303)
T ss_dssp BCHHHHHHHHHHH--HHTTCSEEEESSTTTTGG------------GSC----HHHHHHHHHHHHHHHTTTSEEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECeeccChh------------hCC----HHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 4556688899999 899999999888765421 011 1123456666677777789998655555
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYH 294 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~ 294 (328)
+-+++.+.. ++|||+|++....++.
T Consensus 91 ~t~~ai~la~~A~~~Gadavlv~~P~y~~ 119 (303)
T 2wkj_A 91 STAESQQLAASAKRYGFDAVSAVTPFYYP 119 (303)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSC
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCC
Confidence 555555433 4899999999988643
No 306
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=96.06 E-value=0.045 Score=49.88 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=60.6
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ -++ ...-.+.++.+.+.+++++|||+.-|-.
T Consensus 32 iD~~~l~~lv~~l--i~~Gv~Gl~v~GtTGE~~------------~Ls----~~Er~~v~~~~~~~~~gr~pviaGvg~~ 93 (307)
T 3s5o_A 32 VDYGKLEENLHKL--GTFPFRGFVVQGSNGEFP------------FLT----SSERLEVVSRVRQAMPKNRLLLAGSGCE 93 (307)
T ss_dssp BCHHHHHHHHHHH--TTSCCSEEEESSGGGTGG------------GSC----HHHHHHHHHHHHHTSCTTSEEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccchh------------hCC----HHHHHHHHHHHHHHcCCCCcEEEecCCC
Confidence 4556688899999 999999999988775421 011 1123466677777777789988655555
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYH 294 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~ 294 (328)
+-+++.+.. ++|||+|++-...++.
T Consensus 94 ~t~~ai~la~~A~~~Gadavlv~~P~y~~ 122 (307)
T 3s5o_A 94 STQATVEMTVSMAQVGADAAMVVTPCYYR 122 (307)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCTTG
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 666555433 5899999999887653
No 307
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=96.06 E-value=0.045 Score=49.86 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=60.4
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ -++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 34 iD~~~l~~lv~~l--i~~Gv~gl~v~GttGE~~------------~Ls----~~Er~~v~~~~~~~~~grvpviaGvg~~ 95 (304)
T 3cpr_A 34 IDIAAGREVAAYL--VDKGLDSLVLAGTTGESP------------TTT----AAEKLELLKAVREEVGDRAKLIAGVGTN 95 (304)
T ss_dssp BCHHHHHHHHHHH--HHTTCCEEEESSTTTTTT------------TSC----HHHHHHHHHHHHHHHTTTSEEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccChh------------hCC----HHHHHHHHHHHHHHhCCCCcEEecCCCC
Confidence 5556688899999 899999999888765421 011 1123456666677777789998655555
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhcCch
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYHGPP 297 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~gp~ 297 (328)
+-+++.+.. ++|||+|++....++. |.
T Consensus 96 st~~ai~la~~A~~~Gadavlv~~P~y~~-~~ 126 (304)
T 3cpr_A 96 NTRTSVELAEAAASAGADGLLVVTPYYSK-PS 126 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSC-CC
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCC-CC
Confidence 555555433 4799999999987543 53
No 308
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=96.04 E-value=0.031 Score=51.23 Aligned_cols=88 Identities=15% Similarity=0.102 Sum_probs=61.9
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 42 iD~~~l~~lv~~l--i~~Gv~Gi~v~GtTGE~~------------~Ls----~~Er~~v~~~~v~~~~grvpViaGvg~~ 103 (315)
T 3na8_A 42 LDLPALGRSIERL--IDGGVHAIAPLGSTGEGA------------YLS----DPEWDEVVDFTLKTVAHRVPTIVSVSDL 103 (315)
T ss_dssp BCHHHHHHHHHHH--HHTTCSEEECSSGGGTGG------------GSC----HHHHHHHHHHHHHHHTTSSCBEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccChh------------hCC----HHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 4556788899999 899999999888765421 011 1223456667777777789999766656
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhcCc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYHGP 296 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~gp 296 (328)
+-+++.+.. ++|||+|++....++. |
T Consensus 104 ~t~~ai~la~~A~~~Gadavlv~~P~y~~-~ 133 (315)
T 3na8_A 104 TTAKTVRRAQFAESLGAEAVMVLPISYWK-L 133 (315)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCCCSSC-C
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCC-C
Confidence 666666543 4899999999988643 5
No 309
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=96.03 E-value=0.04 Score=49.85 Aligned_cols=88 Identities=20% Similarity=0.333 Sum_probs=61.8
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 19 iD~~~l~~lv~~l--i~~Gv~gl~~~GttGE~~------------~Ls----~~Er~~v~~~~~~~~~gr~pviaGvg~~ 80 (291)
T 3tak_A 19 VDWKSLEKLVEWH--IEQGTNSIVAVGTTGEAS------------TLS----MEEHTQVIKEIIRVANKRIPIIAGTGAN 80 (291)
T ss_dssp BCHHHHHHHHHHH--HHHTCCEEEESSTTTTGG------------GSC----HHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHCCCCEEEECccccccc------------cCC----HHHHHHHHHHHHHHhCCCCeEEEeCCCC
Confidence 4556788899999 899999998888765421 011 1223456667777777789999766656
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhcCc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYHGP 296 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~gp 296 (328)
+.+++.+.. ++|||+|++....++. |
T Consensus 81 ~t~~ai~la~~a~~~Gadavlv~~P~y~~-~ 110 (291)
T 3tak_A 81 STREAIELTKAAKDLGADAALLVTPYYNK-P 110 (291)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSC-C
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCC-C
Confidence 666666543 4899999999988643 5
No 310
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=96.02 E-value=0.064 Score=46.50 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC-----CChhhH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD-----LSLDEK 195 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~-----~~~~~~ 195 (328)
...++++.+.+++ ++++.++ + + +.++.+++. .++|++--+..+ +-....
T Consensus 37 ~~~~~a~~~~~~G--~~~i~~~-----~--------~----~~i~~i~~~-------~~~p~i~~~~~~~~~~~~~i~~~ 90 (234)
T 1yxy_A 37 IMPLMAKAAQEAG--AVGIRAN-----S--------V----RDIKEIQAI-------TDLPIIGIIKKDYPPQEPFITAT 90 (234)
T ss_dssp SHHHHHHHHHHHT--CSEEEEE-----S--------H----HHHHHHHTT-------CCSCEEEECBCCCTTSCCCBSCS
T ss_pred hHHHHHHHHHHCC--CcEeecC-----C--------H----HHHHHHHHh-------CCCCEEeeEcCCCCccccccCCh
Confidence 5678888888877 8888764 1 1 235555544 678984211111 101112
Q ss_pred HHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHH
Q psy5880 196 KDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAF 275 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~ 275 (328)
.+.++.+ .++|+|.|+++......+ .+. ...+.++.+++.++ +++++. ++++.+++.
T Consensus 91 ~~~i~~~--~~~Gad~V~l~~~~~~~~--------------~~~----~~~~~i~~i~~~~~-~~~v~~--~~~t~~ea~ 147 (234)
T 1yxy_A 91 MTEVDQL--AALNIAVIAMDCTKRDRH--------------DGL----DIASFIRQVKEKYP-NQLLMA--DISTFDEGL 147 (234)
T ss_dssp HHHHHHH--HTTTCSEEEEECCSSCCT--------------TCC----CHHHHHHHHHHHCT-TCEEEE--ECSSHHHHH
T ss_pred HHHHHHH--HHcCCCEEEEcccccCCC--------------CCc----cHHHHHHHHHHhCC-CCeEEE--eCCCHHHHH
Confidence 3345667 799999998876432211 000 12477888888774 366554 789999999
Q ss_pred HHHHhccCee
Q psy5880 276 EKIKAGASLV 285 (328)
Q Consensus 276 ~~l~~GAd~V 285 (328)
++..+|||.|
T Consensus 148 ~a~~~Gad~i 157 (234)
T 1yxy_A 148 VAHQAGIDFV 157 (234)
T ss_dssp HHHHTTCSEE
T ss_pred HHHHcCCCEE
Confidence 9999999999
No 311
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=96.02 E-value=0.048 Score=49.27 Aligned_cols=90 Identities=19% Similarity=0.313 Sum_probs=61.2
Q ss_pred CCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEec
Q psy5880 187 APDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVG 266 (328)
Q Consensus 187 ~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~G 266 (328)
...++.+.+.++++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-
T Consensus 15 dg~iD~~~l~~lv~~l--i~~Gv~gl~~~GttGE~~------------~Ls----~~Er~~v~~~~~~~~~gr~pviaGv 76 (289)
T 2yxg_A 15 NKEVDFDGLEENINFL--IENGVSGIVAVGTTGESP------------TLS----HEEHKKVIEKVVDVVNGRVQVIAGA 76 (289)
T ss_dssp TTEECHHHHHHHHHHH--HHTTCSEEEESSTTTTGG------------GSC----HHHHHHHHHHHHHHHTTSSEEEEEC
T ss_pred CCCcCHHHHHHHHHHH--HHCCCCEEEECccccChh------------hCC----HHHHHHHHHHHHHHhCCCCcEEEeC
Confidence 3446667788999999 899999999888765421 011 1123456666677777789998655
Q ss_pred CCCCHHHHHHHH----HhccCeeeehhHHhhc
Q psy5880 267 GVFSGKDAFEKI----KAGASLVQIYTSFVYH 294 (328)
Q Consensus 267 GI~s~~da~~~l----~~GAd~V~vg~a~l~~ 294 (328)
|=.+-+++.+.. ++|||+|++....++.
T Consensus 77 g~~~t~~ai~la~~a~~~Gadavlv~~P~y~~ 108 (289)
T 2yxg_A 77 GSNCTEEAIELSVFAEDVGADAVLSITPYYNK 108 (289)
T ss_dssp CCSSHHHHHHHHHHHHHHTCSEEEEECCCSSC
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 555555555433 4899999999988643
No 312
>4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A
Probab=96.00 E-value=0.097 Score=48.93 Aligned_cols=126 Identities=13% Similarity=0.203 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhc-ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 120 DVVLDSVKGILKFG-DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 120 ~~i~~~~~~a~~~~-~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
+...+.++.+.... .++..+-+.++. +.+.-.+.+++||++ ++ .++.|.+-....++.++..++
T Consensus 143 ~~~~~~~~~~~~~~~~Gf~~~K~k~g~----------~~~~di~~v~avr~~---~g--~~~~l~vDaN~~~~~~~A~~~ 207 (378)
T 4hpn_A 143 DRVSDNASEMAERRAEGFHACKIKIGF----------GVEEDLRVIAAVREA---IG--PDMRLMIDANHGYTVTEAITL 207 (378)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCS----------CHHHHHHHHHHHHHH---HT--TTSEEEEECTTCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccceecccccC----------ChHHHHHHHHHHHHh---cC--CcEEEEEecCcccCHHHHHHH
Confidence 34555555554443 368888766551 122334566677766 34 678999999888998888899
Q ss_pred HHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
++.+ .+.++.+| .. |+.+..++..+++++..+ +||.+.=.+.+..|+.+++
T Consensus 208 ~~~l--~~~~i~~i-------Ee------------------P~~~~d~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~i 258 (378)
T 4hpn_A 208 GDRA--AGFGIDWF-------EE------------------PVVPEQLDAYARVRAGQP--IPVAGGETWHGRYGMWQAL 258 (378)
T ss_dssp HHHH--GGGCCSCE-------EC------------------CSCTTCHHHHHHHHHHSS--SCEEECTTCCHHHHHHHHH
T ss_pred Hhhh--hhcccchh-------hc------------------CCCccchhhhHHHHhhCC--ceeeCCcCccchHhHHHHH
Confidence 9999 88877665 11 122233566788888887 9999988999999999999
Q ss_pred Hhc-cCeeeehh
Q psy5880 279 KAG-ASLVQIYT 289 (328)
Q Consensus 279 ~~G-Ad~V~vg~ 289 (328)
+.| +|.|++=-
T Consensus 259 ~~~a~d~i~~d~ 270 (378)
T 4hpn_A 259 SAGAVDILQPDL 270 (378)
T ss_dssp HTTCCSEECCBT
T ss_pred HcCCCCEEeeCC
Confidence 987 88888653
No 313
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=96.00 E-value=0.18 Score=45.46 Aligned_cols=111 Identities=15% Similarity=0.067 Sum_probs=68.4
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCc------cEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHH
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKV------DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISE 251 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~------d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~ 251 (328)
.++||++|-....+.+|+...++.+ .+.|. +-|++..+...++ + ......+..+..
T Consensus 130 ~gkPVilK~G~~~t~~e~~~ave~i--~~~Gn~~~~~~~~i~L~erg~~y~-------------~---~~~~vdl~~i~~ 191 (288)
T 3tml_A 130 SGKPVNIKKGQFLAPHDMKNVIDKA--RDAAREAGLSEDRFMACERGVSFG-------------Y---NNLVSDMRSLAI 191 (288)
T ss_dssp SSSCEEEECCTTCCTTHHHHHHHHH--HHHHHTTTCCSCCEEEEECCEECS-------------S---SCEECCHHHHHH
T ss_pred cCCcEEEeCCCCCCHHHHHHHHHHH--HHcCCCccCCCCcEEEEeCCCCCC-------------C---CcCcCCHHHHHH
Confidence 6889999998877777888888988 88887 6566654433211 1 111124677777
Q ss_pred HHHHcCCCccEEEe---------------cCCCCH--HHHHHHHHhccCeeeehhHH-----hhc-----CchHHHHHHH
Q psy5880 252 MYKLTKGKLPIIGV---------------GGVFSG--KDAFEKIKAGASLVQIYTSF-----VYH-----GPPLVTRIKS 304 (328)
Q Consensus 252 i~~~~~~~ipvia~---------------GGI~s~--~da~~~l~~GAd~V~vg~a~-----l~~-----gp~~~~~i~~ 304 (328)
+++ .. +||+.. ||-+.. .-+..++.+|||+++|=+-+ +.+ .|+-++++.+
T Consensus 192 lk~-~~--~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GadGl~iE~H~~pd~al~D~~~sl~p~el~~lv~ 268 (288)
T 3tml_A 192 MRE-TN--APVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAVATGVAGLFMETHPNPAEAKSDGPNAVPLNRMGALLE 268 (288)
T ss_dssp GGG-GS--SCEEEEHHHHTCCCC--------CTTHHHHHHHHHHHHCCSEEEEEEESSGGGCSSCGGGCEEGGGHHHHHH
T ss_pred HHh-cC--CcEEEcCCcccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEeeccChhhcCCchhhcCCHHHHHHHHH
Confidence 877 65 999872 444332 34667888999966553211 011 2555677766
Q ss_pred HHHHH
Q psy5880 305 ELEEL 309 (328)
Q Consensus 305 ~l~~~ 309 (328)
.++..
T Consensus 269 ~ir~i 273 (288)
T 3tml_A 269 TLVTL 273 (288)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 314
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=95.98 E-value=0.19 Score=47.03 Aligned_cols=197 Identities=12% Similarity=0.041 Sum_probs=116.8
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcC-CCCCcchhcccCCc---c----cccc--------cchhHHHHHHHHHHHHhcccc
Q psy5880 73 KLQAKDQLKHLLKTVVETRNQLAL-KPLPPILVKIAPDL---S----LDEK--------KDIADVVLDSVKGILKFGDVA 136 (328)
Q Consensus 73 ~~~~~~~L~~ll~~v~~~~~~~~~-~~~~Pv~vki~~~l---~----~~~n--------~~~~~~i~~~~~~a~~~~~~~ 136 (328)
..++.+...++++.+++++...-+ +.++|--. +.|+. . .+.. ....+.+..+.+.++..+ .
T Consensus 39 H~Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl-~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~G--i 115 (385)
T 1vli_A 39 HDGKLDQAFALIDAAAEAGADAVKFQMFQADRM-YQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQ--V 115 (385)
T ss_dssp TTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGG-TSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTT--C
T ss_pred ccccHHHHHHHHHHHHHhCCCEEeeeeeccCcc-cCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHcC--C
Confidence 344788899999999998866221 22233100 01110 0 0000 123566777778887776 3
Q ss_pred cEEEEccCCCCCc----------------chhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 137 HYFVVNVSSPNTA----------------NLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 137 d~ieiN~scPn~~----------------g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.++ +.|... +.+..+|.. +++.+.+ .++||++|-... +.+++...++
T Consensus 116 ~~~----stpfD~~svd~l~~~~vd~~KIgS~~~~N~p----LL~~va~--------~gKPViLStGma-Tl~Ei~~Ave 178 (385)
T 1vli_A 116 IFL----STVCDEGSADLLQSTSPSAFKIASYEINHLP----LLKYVAR--------LNRPMIFSTAGA-EISDVHEAWR 178 (385)
T ss_dssp EEE----CBCCSHHHHHHHHTTCCSCEEECGGGTTCHH----HHHHHHT--------TCSCEEEECTTC-CHHHHHHHHH
T ss_pred cEE----EccCCHHHHHHHHhcCCCEEEECcccccCHH----HHHHHHh--------cCCeEEEECCCC-CHHHHHHHHH
Confidence 332 233321 222333333 3444332 589999999886 8889999999
Q ss_pred HhccccCCc-cEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc-CCCccEEEecCCCC-HHHHHHH
Q psy5880 201 VVLDSKCKV-DGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT-KGKLPIIGVGGVFS-GKDAFEK 277 (328)
Q Consensus 201 ~l~~~~~G~-d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-~~~ipvia~GGI~s-~~da~~~ 277 (328)
.+ .+.|. +.+.++++ ..+| . +....+|..+..+++.+ . +||..++=-.- ..-+..+
T Consensus 179 ~i--~~~Gn~~iiLlhc~-s~YP---------------t-p~~~~nL~aI~~Lk~~f~~--lpVG~SdHt~G~~~~~~AA 237 (385)
T 1vli_A 179 TI--RAEGNNQIAIMHCV-AKYP---------------A-PPEYSNLSVIPMLAAAFPE--AVIGFSDHSEHPTEAPCAA 237 (385)
T ss_dssp HH--HTTTCCCEEEEEEC-SSSS---------------C-CGGGCCTTHHHHHHHHSTT--SEEEEEECCSSSSHHHHHH
T ss_pred HH--HHCCCCcEEEEecc-CCCC---------------C-ChhhcCHHHHHHHHHHcCC--CCEEeCCCCCCchHHHHHH
Confidence 99 88998 55545532 2222 1 11234577888899988 5 89977665444 6777788
Q ss_pred HHhccCeeeehh----HHh------hcCchHHHHHHHHHHHHH
Q psy5880 278 IKAGASLVQIYT----SFV------YHGPPLVTRIKSELEELL 310 (328)
Q Consensus 278 l~~GAd~V~vg~----a~l------~~gp~~~~~i~~~l~~~m 310 (328)
+.+||+.|...- ++- .=.|+-++++.+.++..-
T Consensus 238 vAlGA~iIEkHftldra~~G~D~~~SL~P~ef~~lv~~ir~i~ 280 (385)
T 1vli_A 238 VRLGAKLIEKHFTIDKNLPGADHSFALNPDELKEMVDGIRKTE 280 (385)
T ss_dssp HHTTCSEEEEEBCSCTTSSCSSCTTSBCHHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEeCCCccccCCCCchhhhCCHHHHHHHHHHHHHHH
Confidence 899999888662 220 013566778877776554
No 315
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=95.97 E-value=0.34 Score=44.82 Aligned_cols=115 Identities=12% Similarity=0.104 Sum_probs=81.0
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc-
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT- 256 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~- 256 (328)
.++||++|-... +.+++...++.+ .+.|.+.+.++++ ..+| . +....+|..+..+++..
T Consensus 147 ~gkPviLstGma-t~~Ei~~Ave~i--~~~G~~iiLlhc~-s~Yp---------------~-~~~~~nL~ai~~lk~~f~ 206 (349)
T 2wqp_A 147 FGKPIILSTGMN-SIESIKKSVEII--REAGVPYALLHCT-NIYP---------------T-PYEDVRLGGMNDLSEAFP 206 (349)
T ss_dssp TCSCEEEECTTC-CHHHHHHHHHHH--HHHTCCEEEEECC-CCSS---------------C-CGGGCCTHHHHHHHHHCT
T ss_pred cCCeEEEECCCC-CHHHHHHHHHHH--HHcCCCEEEEecc-CCCC---------------C-ChhhcCHHHHHHHHHHCC
Confidence 589999998886 888999999999 8888876666643 2222 1 12234578889999988
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhccCeeeehh----HH------hhcCchHHHHHHHHHHHHHHHhC
Q psy5880 257 KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT----SF------VYHGPPLVTRIKSELEELLQKEG 314 (328)
Q Consensus 257 ~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~----a~------l~~gp~~~~~i~~~l~~~m~~~g 314 (328)
. +||..++=-.-..-+..++.+||+.|...- ++ ..=.|+-++++.+.++..-...|
T Consensus 207 ~--lpVg~sdHt~G~~~~~AAvAlGA~iIEkH~tld~a~~G~D~~~SL~p~ef~~lv~~ir~~~~alG 272 (349)
T 2wqp_A 207 D--AIIGLSDHTLDNYACLGAVALGGSILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARG 272 (349)
T ss_dssp T--SEEEEECCSSSSHHHHHHHHHTCCEEEEEBCSCTTCCSTTGGGCBCHHHHHHHHHHHHHHHHHSS
T ss_pred C--CCEEeCCCCCcHHHHHHHHHhCCCEEEeCCCccccCCCCChhhhCCHHHHHHHHHHHHHHHHHhC
Confidence 5 999877655456777788899999888762 22 00136668888888776655555
No 316
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=95.95 E-value=0.039 Score=50.02 Aligned_cols=87 Identities=16% Similarity=0.101 Sum_probs=59.8
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 21 iD~~~l~~lv~~l--i~~Gv~gl~~~GttGE~~------------~Ls----~~Er~~v~~~~~~~~~gr~pviaGvg~~ 82 (294)
T 3b4u_A 21 VDIDAMIAHARRC--LSNGCDSVTLFGTTGEGC------------SVG----SRERQAILSSFIAAGIAPSRIVTGVLVD 82 (294)
T ss_dssp BCHHHHHHHHHHH--HHTTCSEEEESSTTTTGG------------GSC----HHHHHHHHHHHHHTTCCGGGEEEEECCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccChh------------hCC----HHHHHHHHHHHHHHhCCCCcEEEeCCCc
Confidence 5556688899999 899999999888765421 011 1123466667777777789998555545
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYH 294 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~ 294 (328)
+-+++.+.. ++|||+|++....++.
T Consensus 83 ~t~~ai~la~~A~~~Gadavlv~~P~y~~ 111 (294)
T 3b4u_A 83 SIEDAADQSAEALNAGARNILLAPPSYFK 111 (294)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCCCSSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCcCCC
Confidence 555555433 4799999999988643
No 317
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=95.95 E-value=0.038 Score=50.64 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=61.9
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|-.
T Consensus 40 iD~~~l~~li~~l--i~~Gv~Gl~v~GtTGE~~------------~Ls----~~Er~~v~~~~v~~~~grvpViaGvg~~ 101 (315)
T 3si9_A 40 IDEKAFCNFVEWQ--ITQGINGVSPVGTTGESP------------TLT----HEEHKRIIELCVEQVAKRVPVVAGAGSN 101 (315)
T ss_dssp BCHHHHHHHHHHH--HHTTCSEEECSSTTTTGG------------GSC----HHHHHHHHHHHHHHHTTSSCBEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEeCccccCcc------------ccC----HHHHHHHHHHHHHHhCCCCcEEEeCCCC
Confidence 4556788899999 899999998888765421 011 1223456667777777789999766666
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhcCc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYHGP 296 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~gp 296 (328)
+-+++.+.. ++|||+|++....++. |
T Consensus 102 st~~ai~la~~A~~~Gadavlv~~P~y~~-~ 131 (315)
T 3si9_A 102 STSEAVELAKHAEKAGADAVLVVTPYYNR-P 131 (315)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSC-C
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCC-C
Confidence 666666543 4899999999988643 5
No 318
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=95.94 E-value=0.55 Score=44.07 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=70.1
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecC-CccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNT-TVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT 256 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~-~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~ 256 (328)
.++||++|-+...+.+++...++.+ .+.|..-|++.-+ +..+| ..+.....+..+..+++..
T Consensus 248 ~gkPVilk~G~~~t~~e~~~Ave~i--~~~Gn~~i~L~~rG~s~yp---------------~~~~~~ldl~~i~~lk~~~ 310 (385)
T 3nvt_A 248 VDKPILLKRGLSATIEEFIGAAEYI--MSQGNGKIILCERGIRTYE---------------KATRNTLDISAVPILKKET 310 (385)
T ss_dssp SSSCEEEECCTTCCHHHHHHHHHHH--HTTTCCCEEEEECCBCCSC---------------CSSSSBCCTTHHHHHHHHB
T ss_pred cCCcEEEecCCCCCHHHHHHHHHHH--HHcCCCeEEEEECCCCCCC---------------CCCccccCHHHHHHHHHhc
Confidence 5899999999888888999999999 8899866655433 32222 1011112456677788877
Q ss_pred CCCccEEEe----cCCCCH--HHHHHHHHhccCeeeehh------HHhhc-----CchHHHHHHHHHHH
Q psy5880 257 KGKLPIIGV----GGVFSG--KDAFEKIKAGASLVQIYT------SFVYH-----GPPLVTRIKSELEE 308 (328)
Q Consensus 257 ~~~ipvia~----GGI~s~--~da~~~l~~GAd~V~vg~------a~l~~-----gp~~~~~i~~~l~~ 308 (328)
. +||+.- +|-+.. .-+..++.+||++++|=. ++ .+ .|+-++++.+.+..
T Consensus 311 ~--lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~H~~pd~a~-~D~~~sl~p~el~~lv~~i~~ 376 (385)
T 3nvt_A 311 H--LPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHPDPAVAL-SDSAQQMDIPEFEEFWNAILA 376 (385)
T ss_dssp S--SCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEBCSCGGGCS-SCTTTSBCHHHHHHHHHHHHH
T ss_pred C--CCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEecCChhhcC-CcccccCCHHHHHHHHHHHHH
Confidence 6 898553 232222 345678889999666543 22 12 25566666666554
No 319
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=95.93 E-value=0.04 Score=50.20 Aligned_cols=90 Identities=23% Similarity=0.348 Sum_probs=61.4
Q ss_pred CCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEec
Q psy5880 187 APDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVG 266 (328)
Q Consensus 187 ~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~G 266 (328)
...++.+.+..+++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-
T Consensus 27 dg~iD~~~l~~lv~~l--i~~Gv~gl~v~GtTGE~~------------~Ls----~eEr~~vi~~~~~~~~grvpViaGv 88 (306)
T 1o5k_A 27 NGELDLESYERLVRYQ--LENGVNALIVLGTTGESP------------TVN----EDEREKLVSRTLEIVDGKIPVIVGA 88 (306)
T ss_dssp TTEECHHHHHHHHHHH--HHTTCCEEEESSGGGTGG------------GCC----HHHHHHHHHHHHHHHTTSSCEEEEC
T ss_pred CCCcCHHHHHHHHHHH--HHcCCCEEEeCccccchh------------hCC----HHHHHHHHHHHHHHhCCCCeEEEcC
Confidence 3346666788999999 899999999888765421 011 1123456666677777789998655
Q ss_pred CCCCHHHHHHHH----HhccCeeeehhHHhhc
Q psy5880 267 GVFSGKDAFEKI----KAGASLVQIYTSFVYH 294 (328)
Q Consensus 267 GI~s~~da~~~l----~~GAd~V~vg~a~l~~ 294 (328)
|=.+-+++.+.. ++|||+|++....++.
T Consensus 89 g~~st~~ai~la~~A~~~Gadavlv~~P~y~~ 120 (306)
T 1o5k_A 89 GTNSTEKTLKLVKQAEKLGANGVLVVTPYYNK 120 (306)
T ss_dssp CCSCHHHHHHHHHHHHHHTCSEEEEECCCSSC
T ss_pred CCccHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 555555555433 4799999999988643
No 320
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=95.93 E-value=0.042 Score=49.85 Aligned_cols=87 Identities=18% Similarity=0.258 Sum_probs=59.2
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 18 iD~~~l~~lv~~l--i~~Gv~gi~v~GttGE~~------------~Ls----~~Er~~v~~~~~~~~~grvpviaGvg~~ 79 (297)
T 2rfg_A 18 VDEKALAGLVDWQ--IKHGAHGLVPVGTTGESP------------TLT----EEEHKRVVALVAEQAQGRVPVIAGAGSN 79 (297)
T ss_dssp ECHHHHHHHHHHH--HHTTCSEEECSSGGGTGG------------GSC----HHHHHHHHHHHHHHHTTSSCBEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccchh------------hCC----HHHHHHHHHHHHHHhCCCCeEEEccCCC
Confidence 5666688999999 899999998888765421 011 1123456666677776779988555555
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYH 294 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~ 294 (328)
+-+++.+.. ++|||+|++....++.
T Consensus 80 ~t~~ai~la~~A~~~Gadavlv~~P~y~~ 108 (297)
T 2rfg_A 80 NPVEAVRYAQHAQQAGADAVLCVAGYYNR 108 (297)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCTTTC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 555555433 4899999999988643
No 321
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=95.91 E-value=0.046 Score=50.44 Aligned_cols=83 Identities=13% Similarity=0.086 Sum_probs=58.9
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCC--ccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHH
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCK--VDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKL 255 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G--~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~ 255 (328)
.++|+.+.+.. ..+ ..+.++.+ .++| ++.+.+... . | ..+..++.++.+++.
T Consensus 93 ~g~~v~v~~g~--~~~-~~~~a~~~--~~~g~~~~~i~i~~~----------------~---G--~~~~~~~~i~~lr~~ 146 (336)
T 1ypf_A 93 RGLIASISVGV--KED-EYEFVQQL--AAEHLTPEYITIDIA----------------H---G--HSNAVINMIQHIKKH 146 (336)
T ss_dssp TTCCCEEEECC--SHH-HHHHHHHH--HHTTCCCSEEEEECS----------------S---C--CSHHHHHHHHHHHHH
T ss_pred cCCeEEEeCCC--CHH-HHHHHHHH--HhcCCCCCEEEEECC----------------C---C--CcHHHHHHHHHHHHh
Confidence 35688888643 232 34557777 7888 888865321 0 1 123457889999999
Q ss_pred cCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 256 TKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 256 ~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
++ .|++..|+|.+.+++.++.++|||+|.++
T Consensus 147 ~~--~~~vi~G~v~s~e~A~~a~~aGad~Ivvs 177 (336)
T 1ypf_A 147 LP--ESFVIAGNVGTPEAVRELENAGADATKVG 177 (336)
T ss_dssp CT--TSEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred CC--CCEEEECCcCCHHHHHHHHHcCCCEEEEe
Confidence 86 45555677999999999999999999993
No 322
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=95.91 E-value=0.72 Score=40.88 Aligned_cols=112 Identities=17% Similarity=0.097 Sum_probs=69.7
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.++||++|-+...+.+++...++.+ ...|..-+++.-+... .+++.+.....+..+..+++..+
T Consensus 129 ~~kPV~lk~G~~~t~~e~~~Av~~i--~~~Gn~~i~L~~RG~~--------------~~~~y~~~~v~L~ai~~lk~~~~ 192 (262)
T 1zco_A 129 VENPVLLKRGMGNTIQELLYSAEYI--MAQGNENVILCERGIR--------------TFETATRFTLDISAVPVVKELSH 192 (262)
T ss_dssp SSSCEEEECCTTCCHHHHHHHHHHH--HTTTCCCEEEEECCBC--------------CSCCSSSSBCCTTHHHHHHHHBS
T ss_pred cCCcEEEecCCCCCHHHHHHHHHHH--HHCCCCeEEEEECCCC--------------CCCCcChhhcCHHHHHHHHhhhC
Confidence 5789999988877888899999999 8899866666543211 01111222234567777888776
Q ss_pred CCccEEEe----cCCCC--HHHHHHHHHhccCeeeehhHH-----hhc-----CchHHHHHHHHHH
Q psy5880 258 GKLPIIGV----GGVFS--GKDAFEKIKAGASLVQIYTSF-----VYH-----GPPLVTRIKSELE 307 (328)
Q Consensus 258 ~~ipvia~----GGI~s--~~da~~~l~~GAd~V~vg~a~-----l~~-----gp~~~~~i~~~l~ 307 (328)
+|||+- +|.+. +.-+..+...||+++++=+-+ +.+ .|+-++++.+.++
T Consensus 193 --~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~~~d~al~D~~~sl~p~~~~~l~~~i~ 256 (262)
T 1zco_A 193 --LPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPEPEKALSDSQQQLTFDDFLQLLKELE 256 (262)
T ss_dssp --SCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCSSGGGCSSCTTTCBCHHHHHHHHHHHH
T ss_pred --CCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccCChhhcCCCHHHHHHHHHHHH
Confidence 898652 34332 133556778999977765542 112 2455666665554
No 323
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=95.88 E-value=0.042 Score=50.69 Aligned_cols=87 Identities=14% Similarity=0.152 Sum_probs=58.6
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 52 iD~~~l~~lv~~l--i~~Gv~Gl~v~GtTGE~~------------~Ls----~eEr~~vi~~~ve~~~grvpViaGvg~~ 113 (332)
T 2r8w_A 52 VDIEAFSALIARL--DAAEVDSVGILGSTGIYM------------YLT----REERRRAIEAAATILRGRRTLMAGIGAL 113 (332)
T ss_dssp BCHHHHHHHHHHH--HHHTCSEEEESSTTTTGG------------GSC----HHHHHHHHHHHHHHHTTSSEEEEEECCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccChh------------hCC----HHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 4556688899999 899999999888775421 011 1123456666677777789998544444
Q ss_pred CHHHHHHH----HHhccCeeeehhHHhhc
Q psy5880 270 SGKDAFEK----IKAGASLVQIYTSFVYH 294 (328)
Q Consensus 270 s~~da~~~----l~~GAd~V~vg~a~l~~ 294 (328)
+-+++.+. -++|||+|++....++.
T Consensus 114 st~eai~la~~A~~~Gadavlv~~P~Y~~ 142 (332)
T 2r8w_A 114 RTDEAVALAKDAEAAGADALLLAPVSYTP 142 (332)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCCSSC
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 54555443 34899999999988643
No 324
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=95.86 E-value=0.044 Score=49.80 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=62.5
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC-CccEEEecCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG-KLPIIGVGGV 268 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~-~ipvia~GGI 268 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++ ++|||+.-|=
T Consensus 25 iD~~~l~~lv~~l--i~~Gv~gl~v~GttGE~~------------~Ls----~~Er~~v~~~~~~~~~g~rvpviaGvg~ 86 (301)
T 3m5v_A 25 VDEQSYARLIKRQ--IENGIDAVVPVGTTGESA------------TLT----HEEHRTCIEIAVETCKGTKVKVLAGAGS 86 (301)
T ss_dssp ECHHHHHHHHHHH--HHTTCCEEECSSTTTTGG------------GSC----HHHHHHHHHHHHHHHTTSSCEEEEECCC
T ss_pred CCHHHHHHHHHHH--HHcCCCEEEECccccChh------------hCC----HHHHHHHHHHHHHHhCCCCCeEEEeCCC
Confidence 5666788999999 899999998888765421 011 12234566777777777 7999976666
Q ss_pred CCHHHHHHHH----HhccCeeeehhHHhhcCc
Q psy5880 269 FSGKDAFEKI----KAGASLVQIYTSFVYHGP 296 (328)
Q Consensus 269 ~s~~da~~~l----~~GAd~V~vg~a~l~~gp 296 (328)
.+-+++.+.. ++|||+|++....++. |
T Consensus 87 ~~t~~ai~la~~a~~~Gadavlv~~P~y~~-~ 117 (301)
T 3m5v_A 87 NATHEAVGLAKFAKEHGADGILSVAPYYNK-P 117 (301)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEECCCSSC-C
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCC-C
Confidence 6666666544 4899999999988643 5
No 325
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=95.86 E-value=0.6 Score=42.34 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=83.7
Q ss_pred CcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEc--c---CCCCCcchhhhhhhHHHHHHHHHHHHHHHhh
Q psy5880 100 PPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVN--V---SSPNTANLRKLQAKDQLKHLLKTVVETRNQL 174 (328)
Q Consensus 100 ~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN--~---scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~ 174 (328)
.|+.+-++-+- + ....+...++...+++ +.++.|- . -|.+..+.. .-..+ +.++.|+.++++
T Consensus 90 ~pviaD~d~Gy--g----~~~~v~~~v~~l~~aG--aagv~iED~~~~krcGh~~gk~-l~~~~---e~~~rI~Aa~~A- 156 (305)
T 3ih1_A 90 LPVLVDIDTGF--G----GVLNVARTAVEMVEAK--VAAVQIEDQQLPKKCGHLNGKK-LVTTE---ELVQKIKAIKEV- 156 (305)
T ss_dssp CCEEEECTTCS--S----SHHHHHHHHHHHHHTT--CSEEEEECBCSSCCTTCTTCCC-BCCHH---HHHHHHHHHHHH-
T ss_pred CCEEEECCCCC--C----CHHHHHHHHHHHHHhC--CcEEEECCCCCCcccCCCCCCc-ccCHH---HHHHHHHHHHHc-
Confidence 57766655431 1 1233444445555554 7777653 2 133332221 11222 334444444333
Q ss_pred cCCCCCCEEEEeCCC--CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHH
Q psy5880 175 AVKPLPPILVKIAPD--LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEM 252 (328)
Q Consensus 175 ~~~~~~Pv~vKl~~~--~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i 252 (328)
+ .++-|..|.-.. ...++..+=++.+ .++|+|+|.+.+.. ..+.++++
T Consensus 157 ~--~~~~I~ARtda~~~~g~~~ai~Ra~ay--~eAGAD~i~~e~~~--------------------------~~~~~~~i 206 (305)
T 3ih1_A 157 A--PSLYIVARTDARGVEGLDEAIERANAY--VKAGADAIFPEALQ--------------------------SEEEFRLF 206 (305)
T ss_dssp C--TTSEEEEEECCHHHHCHHHHHHHHHHH--HHHTCSEEEETTCC--------------------------SHHHHHHH
T ss_pred C--CCeEEEEeeccccccCHHHHHHHHHHH--HHcCCCEEEEcCCC--------------------------CHHHHHHH
Confidence 2 566677776542 1234566667777 89999999765421 13667888
Q ss_pred HHHcCCCccEEEe---cCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 253 YKLTKGKLPIIGV---GGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 253 ~~~~~~~ipvia~---GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
.+.++ +|++++ +|-+-.-.+.++-+.|...|..+..++
T Consensus 207 ~~~~~--~P~~~n~~~~g~tp~~~~~eL~~lGv~~v~~~~~~~ 247 (305)
T 3ih1_A 207 NSKVN--APLLANMTEFGKTPYYSAEEFANMGFQMVIYPVTSL 247 (305)
T ss_dssp HHHSC--SCBEEECCTTSSSCCCCHHHHHHTTCSEEEECSHHH
T ss_pred HHHcC--CCEEEeecCCCCCCCCCHHHHHHcCCCEEEEchHHH
Confidence 88887 899864 343222235666678999999997775
No 326
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=95.86 E-value=0.062 Score=50.18 Aligned_cols=92 Identities=23% Similarity=0.144 Sum_probs=61.5
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.+.|++.-|+...+.+ +..+.+ ...|+|++.++-...+ +... . .|......-++.++.+++.++
T Consensus 143 P~~~~ianig~~~~~e---~~~~~v--e~~~adal~ihln~~q--e~~~------p---~Gd~~~~~~~~~I~~l~~~~~ 206 (365)
T 3sr7_A 143 PHLLLATNIGLDKPYQ---AGLQAV--RDLQPLFLQVHINLMQ--ELLM------P---EGEREFRSWKKHLSDYAKKLQ 206 (365)
T ss_dssp --CCEEEEEETTSCHH---HHHHHH--HHHCCSCEEEEECHHH--HHTS------S---SSCCCCHHHHHHHHHHHHHCC
T ss_pred CCCcEEEEeCCCCCHH---HHHHHH--HhcCCCEEEEeccccc--cccC------C---CCCCcHHHHHHHHHHHHHhhC
Confidence 4789998888876643 455555 5678999877643221 0000 0 122222223578899999887
Q ss_pred CCccEEEecCC---CCHHHHHHHHHhccCeeeeh
Q psy5880 258 GKLPIIGVGGV---FSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 258 ~~ipvia~GGI---~s~~da~~~l~~GAd~V~vg 288 (328)
+||+.=| | .+++++..+.++|||+|.|+
T Consensus 207 --~PVivK~-vg~g~s~e~A~~l~~aGad~I~V~ 237 (365)
T 3sr7_A 207 --LPFILKE-VGFGMDVKTIQTAIDLGVKTVDIS 237 (365)
T ss_dssp --SCEEEEE-CSSCCCHHHHHHHHHHTCCEEECC
T ss_pred --CCEEEEE-CCCCCCHHHHHHHHHcCCCEEEEe
Confidence 9998873 6 79999999999999999884
No 327
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=95.80 E-value=0.027 Score=51.60 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=59.6
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|-
T Consensus 30 iD~~~l~~lv~~l--i~~Gv~Gl~v~GtTGE~~------------~Ls----~eEr~~v~~~~v~~~~grvpViaGvg~- 90 (316)
T 3e96_A 30 IDWHHYKETVDRI--VDNGIDVIVPCGNTSEFY------------ALS----LEEAKEEVRRTVEYVHGRALVVAGIGY- 90 (316)
T ss_dssp BCHHHHHHHHHHH--HTTTCCEECTTSGGGTGG------------GSC----HHHHHHHHHHHHHHHTTSSEEEEEECS-
T ss_pred CCHHHHHHHHHHH--HHcCCCEEEeCccccCcc------------cCC----HHHHHHHHHHHHHHhCCCCcEEEEeCc-
Confidence 4556788899999 899999998887765421 011 122345667777777778999866563
Q ss_pred CHHHHHHHH----HhccCeeeehhHHh
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFV 292 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l 292 (328)
+-+++.+.. ++|||+|++...++
T Consensus 91 ~t~~ai~la~~A~~~Gadavlv~~P~y 117 (316)
T 3e96_A 91 ATSTAIELGNAAKAAGADAVMIHMPIH 117 (316)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 777776544 48999999998875
No 328
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=95.77 E-value=0.053 Score=50.24 Aligned_cols=87 Identities=16% Similarity=0.231 Sum_probs=59.9
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 49 ID~~~l~~lv~~l--i~~Gv~Gl~v~GtTGE~~------------~Ls----~eEr~~vi~~~ve~~~grvpViaGvg~~ 110 (343)
T 2v9d_A 49 LDKPGTAALIDDL--IKAGVDGLFFLGSGGEFS------------QLG----AEERKAIARFAIDHVDRRVPVLIGTGGT 110 (343)
T ss_dssp BCHHHHHHHHHHH--HHTTCSCEEESSTTTTGG------------GSC----HHHHHHHHHHHHHHHTTSSCEEEECCSS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEeCccccChh------------hCC----HHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 5556688899999 899999999888765421 011 1123456666677777789998655555
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYH 294 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~ 294 (328)
+-+++.+.. ++|||+|++....++.
T Consensus 111 st~eai~la~~A~~~Gadavlv~~P~Y~~ 139 (343)
T 2v9d_A 111 NARETIELSQHAQQAGADGIVVINPYYWK 139 (343)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCSSSC
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 555555433 4899999999988643
No 329
>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}
Probab=95.76 E-value=0.21 Score=46.53 Aligned_cols=126 Identities=10% Similarity=0.095 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhc-ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFG-DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~-~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++. .++..+-+.++.. +.+.-.+.+++||++ + .+.+|.+.....++.++..++++
T Consensus 144 ~e~~~~~a~~~~~~G~~~iK~Kvg~~---------~~~~d~~~v~avr~~---~---~~~~l~vDaN~~~~~~~A~~~~~ 208 (365)
T 3ik4_A 144 EVHAAASAKAILARGIKSIKVKTAGV---------DVAYDLARLRAIHQA---A---PTAPLIVDGNCGYDVERALAFCA 208 (365)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCSS---------CHHHHHHHHHHHHHH---S---SSCCEEEECTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCC---------CHHHHHHHHHHHHHh---C---CCCeEEEECCCCCCHHHHHHHHH
Confidence 344454444443 2588888777631 123445667777776 2 35789999888899888888888
Q ss_pred Hhcccc--CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 201 VVLDSK--CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 201 ~l~~~~--~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
.+ .+ .++.+| - . |..+..++..+++++..+ +||.+.-.+.+..++.+++
T Consensus 209 ~L--~~~~~~i~~i---E----e------------------P~~~~d~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~i 259 (365)
T 3ik4_A 209 AC--KAESIPMVLF---E----Q------------------PLPREDWAGMAQVTAQSG--FAVAADESARSAHDVLRIA 259 (365)
T ss_dssp HH--HHTTCCEEEE---E----C------------------CSCTTCHHHHHHHHHHSS--SCEEESTTCSSHHHHHHHH
T ss_pred HH--hhCCCCceEE---E----C------------------CCCcccHHHHHHHHhhCC--CCEEECCCCCCHHHHHHHH
Confidence 87 33 333333 1 1 111223566778888887 9999999999999999999
Q ss_pred Hhc-cCeeeehhHH
Q psy5880 279 KAG-ASLVQIYTSF 291 (328)
Q Consensus 279 ~~G-Ad~V~vg~a~ 291 (328)
+.| +|.|++=-..
T Consensus 260 ~~~a~d~v~ik~~~ 273 (365)
T 3ik4_A 260 REGTASVINIKLMK 273 (365)
T ss_dssp HHTCCSEEEECHHH
T ss_pred HhCCCCEEEEcCCc
Confidence 987 8998875443
No 330
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=95.75 E-value=0.029 Score=50.73 Aligned_cols=86 Identities=17% Similarity=0.262 Sum_probs=59.8
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 19 iD~~~l~~lv~~l--i~~Gv~gl~~~GttGE~~------------~Ls----~~Er~~v~~~~~~~~~gr~pvi~Gvg~~ 80 (291)
T 3a5f_A 19 VDFDKLSELIEWH--IKSKTDAIIVCGTTGEAT------------TMT----ETERKETIKFVIDKVNKRIPVIAGTGSN 80 (291)
T ss_dssp BCHHHHHHHHHHH--HHTTCCEEEESSGGGTGG------------GSC----HHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccChh------------hCC----HHHHHHHHHHHHHHhCCCCcEEEeCCcc
Confidence 5666688899999 899999999888765421 011 1123456666677777789998665555
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhh
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVY 293 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~ 293 (328)
+-+++.+.. ++|||+|++....++
T Consensus 81 ~t~~ai~la~~a~~~Gadavlv~~P~y~ 108 (291)
T 3a5f_A 81 NTAASIAMSKWAESIGVDGLLVITPYYN 108 (291)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 666665543 479999999998754
No 331
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=95.74 E-value=0.16 Score=47.12 Aligned_cols=154 Identities=10% Similarity=0.034 Sum_probs=81.5
Q ss_pred hhHHHHHHHhHHHHHHHhhcC-ccceEEeccCC---------CCCcCccCCC------c-hHHHHHHHHHHHHHhhhhcC
Q psy5880 34 FARMRAWVLQFWLLGILKFGD-VAHYFVVNVSS---------PNTANLRKLQ------A-KDQLKHLLKTVVETRNQLAL 96 (328)
Q Consensus 34 ~~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~ss---------pN~~gl~~~~------~-~~~L~~ll~~v~~~~~~~~~ 96 (328)
...+. .++++|.+.++.+.. -.|.|++|.++ |++- .+.++ + ..-+.+++++|++. ++
T Consensus 144 ~~eI~-~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N-~R~D~yGGslenR~r~~~eiv~aVR~a---vG- 217 (349)
T 3hgj_A 144 EAGME-RILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSN-QRTDAYGGSLENRMRFPLQVAQAVREV---VP- 217 (349)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTC-CCCSTTSSSHHHHHHHHHHHHHHHHHH---SC-
T ss_pred HHHHH-HHHHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCccc-ccCCCCCcCHHHHHHHHHHHHHHHHHH---hc-
Confidence 45564 466889988886533 25889999887 7652 23332 1 11234455555544 32
Q ss_pred CCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCC--CCCcchhhhhhhHHHHHHHHHHHHHHHhh
Q psy5880 97 KPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSS--PNTANLRKLQAKDQLKHLLKTVVETRNQL 174 (328)
Q Consensus 97 ~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~sc--Pn~~g~~~~~~~~~~~~i~~~v~~~~~~~ 174 (328)
...|+.+|+.++-... ...+.++..++++.++.++ +|+|++.... +... . ...+....++++.|++.
T Consensus 218 -~d~pV~vRls~~~~~~-~g~~~~~~~~la~~L~~~G--vd~i~vs~g~~~~~~~-~--~~~~~~~~~~~~~ir~~---- 286 (349)
T 3hgj_A 218 -RELPLFVRVSATDWGE-GGWSLEDTLAFARRLKELG--VDLLDCSSGGVVLRVR-I--PLAPGFQVPFADAVRKR---- 286 (349)
T ss_dssp -TTSCEEEEEESCCCST-TSCCHHHHHHHHHHHHHTT--CCEEEEECCCSCSSSC-C--CCCTTTTHHHHHHHHHH----
T ss_pred -CCceEEEEeccccccC-CCCCHHHHHHHHHHHHHcC--CCEEEEecCCcCcccc-c--CCCccccHHHHHHHHHH----
Confidence 3468999988731110 0012233445555555555 9999975321 1110 0 00112234566677765
Q ss_pred cCCCCCCEEEEeCCCC-ChhhHHHHHHHhccccCC-ccEEEEe
Q psy5880 175 AVKPLPPILVKIAPDL-SLDEKKDIADVVLDSKCK-VDGLIVS 215 (328)
Q Consensus 175 ~~~~~~Pv~vKl~~~~-~~~~~~~~a~~l~~~~~G-~d~i~~~ 215 (328)
.++||++= .++ +. ..+ ..+ .+.| +|.|.+.
T Consensus 287 ---~~iPVi~~--Ggi~t~---e~a-~~~--l~~G~aD~V~iG 318 (349)
T 3hgj_A 287 ---VGLRTGAV--GLITTP---EQA-ETL--LQAGSADLVLLG 318 (349)
T ss_dssp ---HCCEEEEC--SSCCCH---HHH-HHH--HHTTSCSEEEES
T ss_pred ---cCceEEEE--CCCCCH---HHH-HHH--HHCCCceEEEec
Confidence 46888753 333 32 233 334 4566 9988654
No 332
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=95.70 E-value=0.027 Score=51.62 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=58.9
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEE-EecCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPII-GVGGV 268 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvi-a~GGI 268 (328)
++.+.+.++++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++||| ++|+
T Consensus 30 iD~~~l~~lv~~l--i~~Gv~gl~v~GtTGE~~------------~Ls----~eEr~~vi~~~~~~~~grvpViaGvg~- 90 (314)
T 3d0c_A 30 IDWKGLDDNVEFL--LQNGIEVIVPNGNTGEFY------------ALT----IEEAKQVATRVTELVNGRATVVAGIGY- 90 (314)
T ss_dssp BCHHHHHHHHHHH--HHTTCSEECTTSGGGTGG------------GSC----HHHHHHHHHHHHHHHTTSSEEEEEECS-
T ss_pred CCHHHHHHHHHHH--HHcCCCEEEECcccCChh------------hCC----HHHHHHHHHHHHHHhCCCCeEEecCCc-
Confidence 4556688899999 899999998877764321 011 1123456666677777789998 5666
Q ss_pred CCHHHHHHHH----HhccCeeeehhHHhhcCch
Q psy5880 269 FSGKDAFEKI----KAGASLVQIYTSFVYHGPP 297 (328)
Q Consensus 269 ~s~~da~~~l----~~GAd~V~vg~a~l~~gp~ 297 (328)
+-+++.+.. ++|||+|++....++. |.
T Consensus 91 -st~~ai~la~~A~~~Gadavlv~~P~y~~-~s 121 (314)
T 3d0c_A 91 -SVDTAIELGKSAIDSGADCVMIHQPVHPY-IT 121 (314)
T ss_dssp -SHHHHHHHHHHHHHTTCSEEEECCCCCSC-CC
T ss_pred -CHHHHHHHHHHHHHcCCCEEEECCCCCCC-CC
Confidence 555555433 4799999999988643 53
No 333
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=95.70 E-value=0.063 Score=45.82 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=60.7
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCC
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKG 258 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~ 258 (328)
+.|++.=+.. .+.+++.+.++.+ .+.|++.|.+.... +..++.++++++.++
T Consensus 6 ~~~i~~~i~~-~d~~~~~~~~~~~--~~~G~~~i~l~~~~------------------------~~~~~~i~~i~~~~~- 57 (212)
T 2v82_A 6 KLPLIAILRG-ITPDEALAHVGAV--IDAGFDAVEIPLNS------------------------PQWEQSIPAIVDAYG- 57 (212)
T ss_dssp SSCEEEECTT-CCHHHHHHHHHHH--HHHTCCEEEEETTS------------------------TTHHHHHHHHHHHHT-
T ss_pred CCCEEEEEeC-CCHHHHHHHHHHH--HHCCCCEEEEeCCC------------------------hhHHHHHHHHHHhCC-
Confidence 5677766654 3556788889998 89999999875421 112456777776665
Q ss_pred Ccc-EEEecCCCCHHHHHHHHHhccCeeeehh
Q psy5880 259 KLP-IIGVGGVFSGKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 259 ~ip-via~GGI~s~~da~~~l~~GAd~V~vg~ 289 (328)
++ +++.|++.+.+++..++++|||.|.++.
T Consensus 58 -~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~ 88 (212)
T 2v82_A 58 -DKALIGAGTVLKPEQVDALARMGCQLIVTPN 88 (212)
T ss_dssp -TTSEEEEECCCSHHHHHHHHHTTCCEEECSS
T ss_pred -CCeEEEeccccCHHHHHHHHHcCCCEEEeCC
Confidence 44 4578999999999999999999998664
No 334
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=95.67 E-value=0.084 Score=49.24 Aligned_cols=162 Identities=14% Similarity=0.074 Sum_probs=81.2
Q ss_pred ChhhHHHHHHHhHHHHHHHhhcC-ccceEEeccC---------CCCCcCccCCCc---hH-HHHHHHHHHHHHhhhhcCC
Q psy5880 32 SSFARMRAWVLQFWLLGILKFGD-VAHYFVVNVS---------SPNTANLRKLQA---KD-QLKHLLKTVVETRNQLALK 97 (328)
Q Consensus 32 ~~~~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~s---------spN~~gl~~~~~---~~-~L~~ll~~v~~~~~~~~~~ 97 (328)
.....+. .++++|.+.++.+.. -.|.|++|.. ||++ ..|.++. .+ ..+-+++.+.+.+..++
T Consensus 148 mt~~eI~-~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~-N~R~D~yGGslenR~r~~~eiv~aVr~avg-- 223 (363)
T 3l5l_A 148 MTLDDIA-RVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHS-NKRTDAYGGSFDNRSRFLLETLAAVREVWP-- 223 (363)
T ss_dssp CCHHHHH-HHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHTTSC--
T ss_pred CCHHHHH-HHHHHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCc-CCCCcccCcCHHHHHHHHHHHHHHHHHHcC--
Confidence 3345565 466889888886432 2488888864 7876 4444431 12 12223333333333332
Q ss_pred CCCcchhcccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcC
Q psy5880 98 PLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAV 176 (328)
Q Consensus 98 ~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~ 176 (328)
...|+.+|+.++=.. + ......+++.+.++.+.+ ++|+|++............ ..+....++++.|++.
T Consensus 224 ~d~pV~vRis~~~~~-~--~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~-~~~~~~~~~~~~ir~~------ 293 (363)
T 3l5l_A 224 ENLPLTARFGVLEYD-G--RDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIP-WGPAFMGPIAERVRRE------ 293 (363)
T ss_dssp TTSCEEEEEEEECSS-S--CHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCC-CCTTTTHHHHHHHHHH------
T ss_pred CCceEEEEecchhcC-C--CCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccC-CCcchhHHHHHHHHHH------
Confidence 346899998763110 0 011234444444444443 4999997643211000000 0111234566677766
Q ss_pred CCCCCEEEEeCCCCChhhHHHHHHHhccccCC-ccEEEEe
Q psy5880 177 KPLPPILVKIAPDLSLDEKKDIADVVLDSKCK-VDGLIVS 215 (328)
Q Consensus 177 ~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G-~d~i~~~ 215 (328)
.++||++ ..++.. ... ++.+ .+.| +|.|.+.
T Consensus 294 -~~iPVi~--~GgI~s--~e~-a~~~--l~~G~aD~V~iG 325 (363)
T 3l5l_A 294 -AKLPVTS--AWGFGT--PQL-AEAA--LQANQLDLVSVG 325 (363)
T ss_dssp -HTCCEEE--CSSTTS--HHH-HHHH--HHTTSCSEEECC
T ss_pred -cCCcEEE--eCCCCC--HHH-HHHH--HHCCCccEEEec
Confidence 4689875 333321 223 3334 4566 9988654
No 335
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=95.66 E-value=0.051 Score=47.28 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=38.6
Q ss_pred HHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhHHhhcCchHHH
Q psy5880 251 EMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVT 300 (328)
Q Consensus 251 ~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~ 300 (328)
.+++. ..+++|+..|||++..++..+...|+|++-||+++|. -+++.+
T Consensus 169 ~ir~~-~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~-a~~~~~ 216 (225)
T 1hg3_A 169 LVKKV-NPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTK-AKDPEK 216 (225)
T ss_dssp HHHHH-CTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT-CSSHHH
T ss_pred HHHhc-cCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHC-CcCHHH
Confidence 33443 3469999999999999999999999999999999984 244433
No 336
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=95.63 E-value=0.029 Score=50.74 Aligned_cols=87 Identities=15% Similarity=0.242 Sum_probs=60.2
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 19 iD~~~l~~lv~~l--i~~Gv~gl~~~GttGE~~------------~Ls----~~Er~~v~~~~~~~~~gr~pviaGvg~~ 80 (292)
T 2ojp_A 19 VCRASLKKLIDYH--VASGTSAIVSVGTTGESA------------TLN----HDEHADVVMMTLDLADGRIPVIAGTGAN 80 (292)
T ss_dssp BCHHHHHHHHHHH--HHHTCCEEEESSTTTTGG------------GSC----HHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccchh------------hCC----HHHHHHHHHHHHHHhCCCCcEEEecCCc
Confidence 4556688899999 899999999888765421 011 1123456666677777789998655555
Q ss_pred CHHHHHHHHH----hccCeeeehhHHhhc
Q psy5880 270 SGKDAFEKIK----AGASLVQIYTSFVYH 294 (328)
Q Consensus 270 s~~da~~~l~----~GAd~V~vg~a~l~~ 294 (328)
+-+++.+..+ +|||+|++....++.
T Consensus 81 ~t~~ai~la~~a~~~Gadavlv~~P~y~~ 109 (292)
T 2ojp_A 81 ATAEAISLTQRFNDSGIVGCLTVTPYYNR 109 (292)
T ss_dssp SHHHHHHHHHHTTTSSCSEEEEECCCSSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 6666665543 799999999987643
No 337
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=95.59 E-value=0.02 Score=55.88 Aligned_cols=69 Identities=25% Similarity=0.295 Sum_probs=53.9
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..+.++.+ .++|+|.|++..... ..+..++.++++++.++ ++||++ |++.+.+++
T Consensus 232 ~~~~a~~l--~~aG~d~I~id~a~g---------------------~~~~~~~~i~~ir~~~p-~~~Vi~-g~v~t~e~a 286 (496)
T 4fxs_A 232 NEERVKAL--VEAGVDVLLIDSSHG---------------------HSEGVLQRIRETRAAYP-HLEIIG-GNVATAEGA 286 (496)
T ss_dssp CHHHHHHH--HHTTCSEEEEECSCT---------------------TSHHHHHHHHHHHHHCT-TCCEEE-EEECSHHHH
T ss_pred hHHHHHHH--HhccCceEEeccccc---------------------cchHHHHHHHHHHHHCC-CceEEE-cccCcHHHH
Confidence 45667778 889999997764321 11345688999999884 488887 789999999
Q ss_pred HHHHHhccCeeeeh
Q psy5880 275 FEKIKAGASLVQIY 288 (328)
Q Consensus 275 ~~~l~~GAd~V~vg 288 (328)
.++.++|||+|-++
T Consensus 287 ~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 287 RALIEAGVSAVKVG 300 (496)
T ss_dssp HHHHHHTCSEEEEC
T ss_pred HHHHHhCCCEEEEC
Confidence 99999999999875
No 338
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=95.58 E-value=0.025 Score=55.01 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=54.1
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..+.++.+ .++|+|.|.+..... . .+..++.++++++.++ ++||++ |.+.+.++
T Consensus 229 ~~~~~a~~l--~~aG~d~I~id~a~g----------------~-----~~~~~~~v~~i~~~~p-~~~Vi~-g~v~t~e~ 283 (490)
T 4avf_A 229 DTGERVAAL--VAAGVDVVVVDTAHG----------------H-----SKGVIERVRWVKQTFP-DVQVIG-GNIATAEA 283 (490)
T ss_dssp THHHHHHHH--HHTTCSEEEEECSCC----------------S-----BHHHHHHHHHHHHHCT-TSEEEE-EEECSHHH
T ss_pred chHHHHHHH--hhcccceEEecccCC----------------c-----chhHHHHHHHHHHHCC-CceEEE-eeeCcHHH
Confidence 345667888 899999997764211 1 1345688999999884 488877 77999999
Q ss_pred HHHHHHhccCeeeeh
Q psy5880 274 AFEKIKAGASLVQIY 288 (328)
Q Consensus 274 a~~~l~~GAd~V~vg 288 (328)
+.++.++|||+|.+|
T Consensus 284 a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 284 AKALAEAGADAVKVG 298 (490)
T ss_dssp HHHHHHTTCSEEEEC
T ss_pred HHHHHHcCCCEEEEC
Confidence 999999999999884
No 339
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=95.53 E-value=0.1 Score=48.74 Aligned_cols=134 Identities=21% Similarity=0.233 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC----C-CChhh
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP----D-LSLDE 194 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~----~-~~~~~ 194 (328)
+....++++|++++ .... +++ ....+++++.... .+.+|+. . .+.|++.-+.. . ++.+.
T Consensus 76 ~in~~la~~a~~~G--~~~~---vGs----~~~~l~~~~~~~s-~~~vr~~----a--p~~~~~anlg~~ql~~~~~~~~ 139 (368)
T 3vkj_A 76 RINKIIAEVAEKFG--IPMG---VGS----QRVAIEKAEARES-FAIVRKV----A--PTIPIIANLGMPQLVKGYGLKE 139 (368)
T ss_dssp HHHHHHHHHHHHHT--CCEE---CCC----CHHHHHCGGGSHH-HHHHHHH----C--SSSCEEEEEEGGGGGTTCCHHH
T ss_pred HHHHHHHHHHHHhC--CCee---eec----chhccCCHHHHhh-HHHHHHh----C--cCcceecCcCeeecCCCCCHHH
Confidence 45677889998887 3322 221 1112233432222 1334433 1 67899987765 3 55444
Q ss_pred HHHHHHHhccccCCccEEEEe-cCCccchhhhccccccccCCCCCCcCch-HHHHHHHHHHHHcCCCccEEEe--cCCCC
Q psy5880 195 KKDIADVVLDSKCKVDGLIVS-NTTVDRYEYLDARYKEETGGLSGEPLRN-KSTELISEMYKLTKGKLPIIGV--GGVFS 270 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~-n~~~~~~~~~~~~~~~~~gg~sg~~~~~-~~l~~v~~i~~~~~~~ipvia~--GGI~s 270 (328)
..+.++.+ +++++.++ |.... .. ... |...+. ..++.++.+++.++ +||+.= |+-.+
T Consensus 140 ~~~av~~~-----~a~al~Ihln~~~~---~~------~p~---g~~~~~~~~~~~i~~i~~~~~--vPVivK~vG~g~s 200 (368)
T 3vkj_A 140 FQDAIQMI-----EADAIAVHLNPAQE---VF------QPE---GEPEYQIYALEKLRDISKELS--VPIIVKESGNGIS 200 (368)
T ss_dssp HHHHHHHT-----TCSEEEEECCHHHH---HH------SSS---CCCBCBTHHHHHHHHHHTTCS--SCEEEECSSSCCC
T ss_pred HHHHHHHh-----cCCCeEEEecchhh---hh------CCC---CCchhhHHHHHHHHHHHHHcC--CCEEEEeCCCCCC
Confidence 44444433 44555443 21110 00 001 111121 25688899999887 999984 66679
Q ss_pred HHHHHHHHHhccCeeeeh
Q psy5880 271 GKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 271 ~~da~~~l~~GAd~V~vg 288 (328)
++++..+.++|||+|-|+
T Consensus 201 ~~~A~~l~~aGad~I~V~ 218 (368)
T 3vkj_A 201 METAKLLYSYGIKNFDTS 218 (368)
T ss_dssp HHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHhCCCCEEEEe
Confidence 999999999999999883
No 340
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=95.52 E-value=0.053 Score=49.05 Aligned_cols=86 Identities=22% Similarity=0.259 Sum_probs=58.0
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 18 iD~~~l~~lv~~l--i~~Gv~gl~~~GttGE~~------------~Ls----~~Er~~v~~~~~~~~~gr~pviaGvg~~ 79 (292)
T 2vc6_A 18 IDEVALHDLVEWQ--IEEGSFGLVPCGTTGESP------------TLS----KSEHEQVVEITIKTANGRVPVIAGAGSN 79 (292)
T ss_dssp ECHHHHHHHHHHH--HHTTCSEEETTSGGGTGG------------GSC----HHHHHHHHHHHHHHHTTSSCBEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccChh------------hCC----HHHHHHHHHHHHHHhCCCCcEEEecCCc
Confidence 5666788999999 899999998887765421 011 1123456666677776779988544444
Q ss_pred CHHHHHHH----HHhccCeeeehhHHhh
Q psy5880 270 SGKDAFEK----IKAGASLVQIYTSFVY 293 (328)
Q Consensus 270 s~~da~~~----l~~GAd~V~vg~a~l~ 293 (328)
+-+++.+. -++|||+|++....++
T Consensus 80 ~t~~ai~la~~A~~~Gadavlv~~P~y~ 107 (292)
T 2vc6_A 80 STAEAIAFVRHAQNAGADGVLIVSPYYN 107 (292)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSS
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 55555543 3479999999998754
No 341
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=95.51 E-value=0.086 Score=48.16 Aligned_cols=83 Identities=13% Similarity=0.051 Sum_probs=58.8
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ -++ ...-.+.++.+.+.+ +++|||+.-|=.
T Consensus 26 iD~~~l~~lv~~l--i~~Gv~Gl~v~GtTGE~~------------~Lt----~~Er~~v~~~~v~~~-grvpViaGvg~~ 86 (313)
T 3dz1_A 26 IDDVSIDRLTDFY--AEVGCEGVTVLGILGEAP------------KLD----AAEAEAVATRFIKRA-KSMQVIVGVSAP 86 (313)
T ss_dssp BCHHHHHHHHHHH--HHTTCSEEEESTGGGTGG------------GSC----HHHHHHHHHHHHHHC-TTSEEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHCCCCEEEeCccCcChh------------hCC----HHHHHHHHHHHHHHc-CCCcEEEecCCC
Confidence 4556788899999 899999999888765421 011 112345666777777 689999766656
Q ss_pred CHHHHHHHH----HhccCeeeehhHH
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSF 291 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~ 291 (328)
+-+++.+.. ++|||+|++-...
T Consensus 87 ~t~~ai~la~~A~~~Gadavlv~~P~ 112 (313)
T 3dz1_A 87 GFAAMRRLARLSMDAGAAGVMIAPPP 112 (313)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCT
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 666666544 4899999998876
No 342
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=95.50 E-value=0.11 Score=43.88 Aligned_cols=82 Identities=23% Similarity=0.311 Sum_probs=60.2
Q ss_pred CEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCc
Q psy5880 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKL 260 (328)
Q Consensus 181 Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~i 260 (328)
|+++=++.. +.++..++++.+ .+.|++.|.++.++. ...+.++.+|+.++.+
T Consensus 11 ~~i~~~~~~-~~~~~~~~~~~~--~~~G~~~iev~~~~~------------------------~~~~~i~~ir~~~~~~- 62 (205)
T 1wa3_A 11 KIVAVLRAN-SVEEAKEKALAV--FEGGVHLIEITFTVP------------------------DADTVIKELSFLKEKG- 62 (205)
T ss_dssp CEEEEECCS-SHHHHHHHHHHH--HHTTCCEEEEETTST------------------------THHHHHHHTHHHHHTT-
T ss_pred CEEEEEecC-CHHHHHHHHHHH--HHCCCCEEEEeCCCh------------------------hHHHHHHHHHHHCCCC-
Confidence 666666543 566788999999 899999998765321 1245677777775322
Q ss_pred cEEEecCCCCHHHHHHHHHhccCeeeehhHH
Q psy5880 261 PIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 261 pvia~GGI~s~~da~~~l~~GAd~V~vg~a~ 291 (328)
.+++.|-+.+++++.+++++|||.| ++..+
T Consensus 63 ~~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~ 92 (205)
T 1wa3_A 63 AIIGAGTVTSVEQCRKAVESGAEFI-VSPHL 92 (205)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCSEE-ECSSC
T ss_pred cEEEecccCCHHHHHHHHHcCCCEE-EcCCC
Confidence 3567778899999999999999999 66443
No 343
>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC, structural genomics, struc genomics consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB: 2guu_A*
Probab=95.50 E-value=0.57 Score=43.34 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCccEEEecCCC-CHHHHHHHHHhccC------eeeehhHHhhcC-c-hHHHHHHHHHHHHHH
Q psy5880 248 LISEMYKLTKGKLPIIGVGGVF-SGKDAFEKIKAGAS------LVQIYTSFVYHG-P-PLVTRIKSELEELLQ 311 (328)
Q Consensus 248 ~v~~i~~~~~~~ipvia~GGI~-s~~da~~~l~~GAd------~V~vg~a~l~~g-p-~~~~~i~~~l~~~m~ 311 (328)
.+..+|+..+ +.+++ +-||. .+.|..+++..|+| .|.+||+++... | ..++++++++...+.
T Consensus 279 el~~IR~~~~-~~~iL-tPGIgaqGGD~~~a~~~Gad~~~~~~iIvVGR~I~~A~dp~~AA~~i~~ei~~a~~ 349 (353)
T 2ffc_A 279 EIKKIRELFP-DCYIL-APGVGAQKGDLRKMLCNGYSKNYEKVLINVGRAITKSGSPQQAAREYHQQIKEVLA 349 (353)
T ss_dssp HHHHHHHHCT-TCCEE-ECCBSTTCBCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCeEE-eCcccCCCCCHHHHHHcCCCcccCcEEEEECHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3556777765 46544 67774 23356667788998 899999998542 3 346666666665543
No 344
>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}
Probab=95.50 E-value=0.25 Score=44.65 Aligned_cols=120 Identities=19% Similarity=0.314 Sum_probs=72.0
Q ss_pred HHHHHHhcccccEEE----EccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEE--eCC--------CCC
Q psy5880 126 VKGILKFGDVAHYFV----VNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVK--IAP--------DLS 191 (328)
Q Consensus 126 ~~~a~~~~~~~d~ie----iN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vK--l~~--------~~~ 191 (328)
++.+.+++ +|++- +|+.+|+. .+.+.++-+.+.+. .+ .++|+++= +.+ ..+
T Consensus 134 Ve~AvrlG--ADaV~~l~~i~~Gs~~e--------~~~l~~la~vv~ea-~~----~GlP~~~ep~~y~r~gg~v~~~~d 198 (307)
T 3fok_A 134 VSSMVDRG--VDFAKTLVRINLSDAGT--------APTLEATAHAVNEA-AA----AQLPIMLEPFMSNWVNGKVVNDLS 198 (307)
T ss_dssp HHHHHHHT--CCEEEEEEEECTTCTTH--------HHHHHHHHHHHHHH-HH----TTCCEEEEEEEEEEETTEEEECCS
T ss_pred HHHHHHCC--CCEEEEEEEECCCChhH--------HHHHHHHHHHHHHH-HH----cCCcEEEEeeccccCCCCcCCCCC
Confidence 34445666 88855 56665543 12223333333222 22 68998874 321 234
Q ss_pred hhhHHHHHHHhccccCCcc----EEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecC
Q psy5880 192 LDEKKDIADVVLDSKCKVD----GLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGG 267 (328)
Q Consensus 192 ~~~~~~~a~~l~~~~~G~d----~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GG 267 (328)
.+-+...++.+ .+.|+| .|-+- |. +..+++.+..+ +||+..||
T Consensus 199 p~~Va~aaRiA--aELGADs~~tivK~~--------------------y~---------e~f~~Vv~a~~--vPVViaGG 245 (307)
T 3fok_A 199 TDAVIQSVAIA--AGLGNDSSYTWMKLP--------------------VV---------EEMERVMESTT--MPTLLLGG 245 (307)
T ss_dssp HHHHHHHHHHH--HTCSSCCSSEEEEEE--------------------CC---------TTHHHHGGGCS--SCEEEECC
T ss_pred HHHHHHHHHHH--HHhCCCcCCCEEEeC--------------------Cc---------HHHHHHHHhCC--CCEEEeCC
Confidence 45566777777 899999 55321 11 11356666666 99998888
Q ss_pred CC--CHHHHHH----HHH-hccCeeeehhHHhh
Q psy5880 268 VF--SGKDAFE----KIK-AGASLVQIYTSFVY 293 (328)
Q Consensus 268 I~--s~~da~~----~l~-~GAd~V~vg~a~l~ 293 (328)
=. +.+++.+ +++ .||..|.+||-+++
T Consensus 246 ~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ 278 (307)
T 3fok_A 246 EGGNDPDATFASWEHALTLPGVRGLTVGRTLLY 278 (307)
T ss_dssp SCC--CHHHHHHHHHHTTSTTEEEEEECTTTSS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEeechhhcc
Confidence 77 4566554 556 69999999999976
No 345
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=95.50 E-value=0.13 Score=47.32 Aligned_cols=153 Identities=10% Similarity=0.061 Sum_probs=81.9
Q ss_pred hHHHHHHHhHHHHHHHhhcC-ccceEEeccC---------CCCCcCccCCC-------chHHHHHHHHHHHHHhhhhcCC
Q psy5880 35 ARMRAWVLQFWLLGILKFGD-VAHYFVVNVS---------SPNTANLRKLQ-------AKDQLKHLLKTVVETRNQLALK 97 (328)
Q Consensus 35 ~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~s---------spN~~gl~~~~-------~~~~L~~ll~~v~~~~~~~~~~ 97 (328)
..+. .++++|.+.++.+.. -.|.|++|.+ ||++ ..+.++ ...-+.+++++|++..
T Consensus 137 ~eI~-~~i~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~-n~R~d~yGGslenr~r~~~eiv~avr~~v------ 208 (338)
T 1z41_A 137 EKVK-ETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLS-NHRTDEYGGSPENRYRFLREIIDEVKQVW------ 208 (338)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHH-HHHHHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCc-CCcCcccCcchhhhHHHHHHHHHHHHHHc------
Confidence 3443 466889888886532 2588898876 4876 233332 1222455666666553
Q ss_pred CCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCC
Q psy5880 98 PLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVK 177 (328)
Q Consensus 98 ~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~ 177 (328)
..|+.+|+.++-... ...+.+...++++.++.++ +|+|++.-......... ..+....++++.|++.
T Consensus 209 -~~pv~vris~~~~~~-~g~~~~~~~~~a~~l~~~G--vd~i~v~~~~~~~~~~~--~~~~~~~~~~~~ir~~------- 275 (338)
T 1z41_A 209 -DGPLFVRVSASDYTD-KGLDIADHIGFAKWMKEQG--VDLIDCSSGALVHADIN--VFPGYQVSFAEKIREQ------- 275 (338)
T ss_dssp -CSCEEEEEECCCCST-TSCCHHHHHHHHHHHHHTT--CCEEEEECCCSSCCCCC--CCTTTTHHHHHHHHHH-------
T ss_pred -CCcEEEEecCcccCC-CCCCHHHHHHHHHHHHHcC--CCEEEEecCccccCCCC--CCccchHHHHHHHHHH-------
Confidence 368999987741110 0112344556666666555 99998754321100000 0111224556667665
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCC-ccEEEEe
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCK-VDGLIVS 215 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G-~d~i~~~ 215 (328)
.++||++ ..++.. ..++.+.+ +.| +|+|.+.
T Consensus 276 ~~iPVi~--~Ggi~s--~~~a~~~l---~~G~aD~V~iG 307 (338)
T 1z41_A 276 ADMATGA--VGMITD--GSMAEEIL---QNGRADLIFIG 307 (338)
T ss_dssp HCCEEEE--CSSCCS--HHHHHHHH---HTTSCSEEEEC
T ss_pred CCCCEEE--ECCCCC--HHHHHHHH---HcCCceEEeec
Confidence 5789875 344421 23333444 556 9998654
No 346
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*
Probab=95.48 E-value=0.32 Score=42.98 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=45.4
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH-HH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG-KD 273 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~-~d 273 (328)
+..+++.. .++|++|++++. .-+..+|+.++.++ ++.+.||+-. .+
T Consensus 164 V~~~A~~a--~~aG~~GvV~sa------------------------------~e~~~iR~~~g~~f-l~VtPGIr~qg~~ 210 (255)
T 3ldv_A 164 VLRLATLT--KNAGLDGVVCSA------------------------------QEASLLKQHLGREF-KLVTPGIRPAGSE 210 (255)
T ss_dssp HHHHHHHH--HHTTCSEEECCH------------------------------HHHHHHHHHHCTTS-EEEEECCCCTTST
T ss_pred HHHHHHHH--HHcCCCEEEECH------------------------------HHHHHHHHhcCCCc-EEEeCCcccCcCC
Confidence 45566666 788999987552 12466677765444 6677777632 12
Q ss_pred ---------HHHHHHhccCeeeehhHHhh
Q psy5880 274 ---------AFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 274 ---------a~~~l~~GAd~V~vg~a~l~ 293 (328)
..+++++|||.+.+||++..
T Consensus 211 ~~dQ~Rv~t~~~a~~aGad~iVvGr~I~~ 239 (255)
T 3ldv_A 211 QGDQRRIMTPAQAIASGSDYLVIGRPITQ 239 (255)
T ss_dssp TSSCSSSCCHHHHHHTTCSEEEECHHHHT
T ss_pred ccceeccCCHHHHHHcCCCEEEECHHHhC
Confidence 45677899999999999974
No 347
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=95.47 E-value=0.055 Score=49.38 Aligned_cols=85 Identities=18% Similarity=0.352 Sum_probs=59.2
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ -++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 26 iD~~~l~~lv~~l--i~~Gv~gl~v~GtTGE~~------------~Ls----~~Er~~v~~~~~~~~~grvpviaGvg~~ 87 (309)
T 3fkr_A 26 LDLASQKRAVDFM--IDAGSDGLCILANFSEQF------------AIT----DDERDVLTRTILEHVAGRVPVIVTTSHY 87 (309)
T ss_dssp BCHHHHHHHHHHH--HHTTCSCEEESSGGGTGG------------GSC----HHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccCcc------------cCC----HHHHHHHHHHHHHHhCCCCcEEEecCCc
Confidence 5566788899999 899999999988765421 011 1123456666677777789999665555
Q ss_pred CHHHHHHHH----HhccCeeeehhHHh
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFV 292 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l 292 (328)
+-+++.+.. ++|||+|++-..++
T Consensus 88 ~t~~ai~la~~A~~~Gadavlv~~Pyy 114 (309)
T 3fkr_A 88 STQVCAARSLRAQQLGAAMVMAMPPYH 114 (309)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSCB
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 555555433 48999999998864
No 348
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=95.41 E-value=0.044 Score=51.06 Aligned_cols=86 Identities=20% Similarity=0.278 Sum_probs=59.7
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+++|.+.+++...+ -++ ...-.+.++.+.+.+++++|||+.-|-.
T Consensus 77 ID~~al~~lv~~l--i~~Gv~Gl~v~GTTGE~~------------~Ls----~eEr~~vi~~~ve~~~grvpViaGvg~~ 138 (360)
T 4dpp_A 77 FDLEAYDDLVNIQ--IQNGAEGVIVGGTTGEGQ------------LMS----WDEHIMLIGHTVNCFGGSIKVIGNTGSN 138 (360)
T ss_dssp BCHHHHHHHHHHH--HHTTCCEEEESSTTTTGG------------GSC----HHHHHHHHHHHHHHHTTTSEEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEecccccChh------------hCC----HHHHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 4556788899999 899999999988765421 011 1122456666677777789999755555
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhh
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVY 293 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~ 293 (328)
+-+++.+.. ++|||++++-...++
T Consensus 139 st~eai~la~~A~~~Gadavlvv~PyY~ 166 (360)
T 4dpp_A 139 STREAIHATEQGFAVGMHAALHINPYYG 166 (360)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 666665544 479999999988753
No 349
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=95.39 E-value=0.07 Score=45.81 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=54.4
Q ss_pred ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEE------
Q psy5880 191 SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIG------ 264 (328)
Q Consensus 191 ~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia------ 264 (328)
+.+...++++.+ .++|++++++.+ .+.++.+++.++ +|+++
T Consensus 21 ~~~~~~~~a~~~--~~~Ga~~i~~~~-----------------------------~~~i~~i~~~~~--~pv~~~~~~~~ 67 (223)
T 1y0e_A 21 SSFIMSKMALAA--YEGGAVGIRANT-----------------------------KEDILAIKETVD--LPVIGIVKRDY 67 (223)
T ss_dssp CHHHHHHHHHHH--HHHTCSEEEEES-----------------------------HHHHHHHHHHCC--SCEEEECBCCC
T ss_pred CCccHHHHHHHH--HHCCCeeeccCC-----------------------------HHHHHHHHHhcC--CCEEeeeccCC
Confidence 335678899999 899999986531 255788888876 89974
Q ss_pred -ecCC---CCHHHHHHHHHhccCeeeehhHHhhcCc
Q psy5880 265 -VGGV---FSGKDAFEKIKAGASLVQIYTSFVYHGP 296 (328)
Q Consensus 265 -~GGI---~s~~da~~~l~~GAd~V~vg~a~l~~gp 296 (328)
.+++ .+.+++..++.+|||.|.++.... .+|
T Consensus 68 ~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~-~~p 102 (223)
T 1y0e_A 68 DHSDVFITATSKEVDELIESQCEVIALDATLQ-QRP 102 (223)
T ss_dssp TTCCCCBSCSHHHHHHHHHHTCSEEEEECSCS-CCS
T ss_pred CccccccCCcHHHHHHHHhCCCCEEEEeeecc-cCc
Confidence 2345 567889999999999999998764 335
No 350
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=95.32 E-value=0.086 Score=48.14 Aligned_cols=88 Identities=19% Similarity=0.388 Sum_probs=62.5
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 25 iD~~~l~~lv~~l--i~~Gv~Gl~v~GtTGE~~------------~Ls----~~Er~~v~~~~~~~~~grvpViaGvg~~ 86 (311)
T 3h5d_A 25 INFDAIPALIEHL--LAHHTDGILLAGTTAESP------------TLT----HDEELELFAAVQKVVNGRVPLIAGVGTN 86 (311)
T ss_dssp BCTTHHHHHHHHH--HHTTCCCEEESSTTTTGG------------GSC----HHHHHHHHHHHHHHSCSSSCEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccChh------------hCC----HHHHHHHHHHHHHHhCCCCcEEEeCCCc
Confidence 4555688999999 899999999888775421 011 1223466777777777789999776666
Q ss_pred CHHHHHHHH----Hhcc-CeeeehhHHhhcCc
Q psy5880 270 SGKDAFEKI----KAGA-SLVQIYTSFVYHGP 296 (328)
Q Consensus 270 s~~da~~~l----~~GA-d~V~vg~a~l~~gp 296 (328)
+-+++.+.. ++|| |+|++....++. |
T Consensus 87 ~t~~ai~la~~A~~~Ga~davlv~~P~y~~-~ 117 (311)
T 3h5d_A 87 DTRDSIEFVKEVAEFGGFAAGLAIVPYYNK-P 117 (311)
T ss_dssp SHHHHHHHHHHHHHSCCCSEEEEECCCSSC-C
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEcCCCCCC-C
Confidence 777776644 3587 999999988643 5
No 351
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=95.32 E-value=0.39 Score=43.47 Aligned_cols=127 Identities=14% Similarity=0.137 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC-ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCC-CC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDL-SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG-LS 237 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~-~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg-~s 237 (328)
+.+++..++..++. .+.||++.+..++ +.+++.+.++.+ +++|+.+|.+=..... ...| ..
T Consensus 68 ~~em~~~~~~I~r~----~~~PviaD~d~Gyg~~~~v~~~v~~l--~~aGaagv~iEDq~~~-----------k~cGh~~ 130 (298)
T 3eoo_A 68 MDDVLVDANRITNA----TNLPLLVDIDTGWGGAFNIARTIRSF--IKAGVGAVHLEDQVGQ-----------KRCGHRP 130 (298)
T ss_dssp HHHHHHHHHHHHHH----CCSCEEEECTTCSSSHHHHHHHHHHH--HHTTCSEEEEECBCCC-----------CCTTCCC
T ss_pred HHHHHHHHHHHHhh----cCCeEEEECCCCCCCHHHHHHHHHHH--HHhCCeEEEECCCCCC-----------cccCCCC
Confidence 34444444444332 6799999998875 445667778888 8999999988654421 0122 34
Q ss_pred CCcCchHH--HHHHHHHHHHc-CCCccEEEecCCCCH-------HHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 238 GEPLRNKS--TELISEMYKLT-KGKLPIIGVGGVFSG-------KDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 238 g~~~~~~~--l~~v~~i~~~~-~~~ipvia~GGI~s~-------~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
|..+.|.. .+.|+..+++- +.++-|++=-..... +-+..+.++|||+|.+-.. .+++.++++.+.+
T Consensus 131 gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if~~~~---~~~ee~~~~~~~~ 206 (298)
T 3eoo_A 131 GKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFPEAM---KTLDDYRRFKEAV 206 (298)
T ss_dssp CCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCC---CSHHHHHHHHHHH
T ss_pred CCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEEeCCC---CCHHHHHHHHHHc
Confidence 55555543 33444334432 223555554333211 2344466799999987543 3577788887765
No 352
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=95.29 E-value=0.2 Score=44.88 Aligned_cols=131 Identities=13% Similarity=0.122 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHH
Q psy5880 118 IADVVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKK 196 (328)
Q Consensus 118 ~~~~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~ 196 (328)
++++++.+.+.++.+.+ ++|+|.+.+.-|.. . -+.+...+++++ . ...|+.+--.-+... +..
T Consensus 106 s~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg--~---iD~~~~~~Li~~---a-------~~l~vTFHRAFD~~~-d~~ 169 (287)
T 3iwp_A 106 SDREIEVMKADIRLAKLYGADGLVFGALTEDG--H---IDKELCMSLMAI---C-------RPLPVTFHRAFDMVH-DPM 169 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS--C---BCHHHHHHHHHH---H-------TTSCEEECGGGGGCS-CHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEeeeCCCC--C---cCHHHHHHHHHH---c-------CCCcEEEECchhccC-CHH
Confidence 34555655555555554 59999966553442 1 133445555543 2 346777654433221 245
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHH
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFE 276 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~ 276 (328)
+..+.+ .+.|++.|-.++.... -+.+++.++++.+..+++++|++.||| +.+.+.+
T Consensus 170 ~Ale~L--i~lGvdrILTSG~~~~---------------------a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV-~~~Ni~~ 225 (287)
T 3iwp_A 170 AALETL--LTLGFERVLTSGCDSS---------------------ALEGLPLIKRLIEQAKGRIVVMPGGGI-TDRNLQR 225 (287)
T ss_dssp HHHHHH--HHHTCSEEEECTTSSS---------------------TTTTHHHHHHHHHHHTTSSEEEECTTC-CTTTHHH
T ss_pred HHHHHH--HHcCCCEEECCCCCCC---------------------hHHhHHHHHHHHHHhCCCCEEEECCCc-CHHHHHH
Confidence 566778 7889999865543111 123467778777766667999999998 4567777
Q ss_pred HHH-hccCeeeeh
Q psy5880 277 KIK-AGASLVQIY 288 (328)
Q Consensus 277 ~l~-~GAd~V~vg 288 (328)
.++ +|++.+-..
T Consensus 226 l~~~tG~~~~H~S 238 (287)
T 3iwp_A 226 ILEGSGATEFHCS 238 (287)
T ss_dssp HHHHHCCSEEEEC
T ss_pred HHHhhCCCEEeEC
Confidence 776 898877654
No 353
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=95.25 E-value=0.46 Score=41.02 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=90.4
Q ss_pred CcchhcccC-CcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCC
Q psy5880 100 PPILVKIAP-DLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVK 177 (328)
Q Consensus 100 ~Pv~vki~~-~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~ 177 (328)
.|+.+=|-| +-+. ..++++++.+.+.++.+.+ ++|++.+-+..|+ |. -+.+.+.+++++.
T Consensus 55 ipV~vMIRPR~GdF---~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~d--g~---iD~~~~~~Li~~a---------- 116 (224)
T 2bdq_A 55 ISVAVMIRPRGGNF---VYNDLELRIMEEDILRAVELESDALVLGILTSN--NH---IDTEAIEQLLPAT---------- 116 (224)
T ss_dssp CEEEEECCSSSSCS---CCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTT--SS---BCHHHHHHHHHHH----------
T ss_pred CceEEEECCCCCCC---cCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCC--CC---cCHHHHHHHHHHh----------
Confidence 576555534 3222 2346677777777777766 6999996554333 21 1334555555432
Q ss_pred CCCCEEEEeCCCCC-hhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc
Q psy5880 178 PLPPILVKIAPDLS-LDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT 256 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~-~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~ 256 (328)
.+.|+.+--.-+.. ..+..+..+.| .+.|++.|-.++.... .+ -..+++.++++.+..
T Consensus 117 ~~~~vTFHRAFD~~~~~d~~~ale~L--~~lGv~rILTSG~~~~------------------~~-a~~g~~~L~~Lv~~a 175 (224)
T 2bdq_A 117 QGLPLVFHMAFDVIPKSDQKKSIDQL--VALGFTRILLHGSSNG------------------EP-IIENIKHIKALVEYA 175 (224)
T ss_dssp TTCCEEECGGGGGSCTTTHHHHHHHH--HHTTCCEEEECSCSSC------------------CC-GGGGHHHHHHHHHHH
T ss_pred CCCeEEEECchhccCCcCHHHHHHHH--HHcCCCEEECCCCCCC------------------Cc-HHHHHHHHHHHHHhh
Confidence 35788775554432 12345667888 8999999964442211 00 123456777776655
Q ss_pred CCCccEEEecCCCCHHHHHHHH-HhccCeeeeh
Q psy5880 257 KGKLPIIGVGGVFSGKDAFEKI-KAGASLVQIY 288 (328)
Q Consensus 257 ~~~ipvia~GGI~s~~da~~~l-~~GAd~V~vg 288 (328)
++++.|++.|||+ ++.+.+++ .+|++.+-..
T Consensus 176 ~~ri~Im~GgGV~-~~Ni~~l~~~tGv~e~H~s 207 (224)
T 2bdq_A 176 NNRIEIMVGGGVT-AENYQYICQETGVKQAHGT 207 (224)
T ss_dssp TTSSEEEECSSCC-TTTHHHHHHHHTCCEEEET
T ss_pred CCCeEEEeCCCCC-HHHHHHHHHhhCCCEEccc
Confidence 5679999999985 45666666 4899888743
No 354
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=95.21 E-value=0.17 Score=46.69 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=61.5
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.+.|+++.+..+.+.+ .+.+.+ ..+|+|+|.++-..... .. . ..|.+.....++.++.+++.++
T Consensus 115 ~~~pv~~~i~~~~~~~---~~~~~~--~~~gad~i~i~~~~~~~--~~--------~-~~~~~~~~~~~~~i~~vr~~~~ 178 (349)
T 1p0k_A 115 PNGLIFANLGSEATAA---QAKEAV--EMIGANALQIHLNVIQE--IV--------M-PEGDRSFSGALKRIEQICSRVS 178 (349)
T ss_dssp SSSCEEEEEETTCCHH---HHHHHH--HHTTCSEEEEEECTTTT--C-----------------CTTHHHHHHHHHHHCS
T ss_pred CCceeEEeecCCCCHH---HHHHHH--HhcCCCeEEecccchhh--hc--------C-CCCCcchHHHHHHHHHHHHHcC
Confidence 5789999988666643 345556 67899998776432210 00 0 0011111114678888998886
Q ss_pred CCccEEEe--cCCCCHHHHHHHHHhccCeeeeh
Q psy5880 258 GKLPIIGV--GGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 258 ~~ipvia~--GGI~s~~da~~~l~~GAd~V~vg 288 (328)
+||+.= |...+.+++..+.++|||+|.+.
T Consensus 179 --~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~ 209 (349)
T 1p0k_A 179 --VPVIVKEVGFGMSKASAGKLYEAGAAAVDIG 209 (349)
T ss_dssp --SCEEEEEESSCCCHHHHHHHHHHTCSEEEEE
T ss_pred --CCEEEEecCCCCCHHHHHHHHHcCCCEEEEc
Confidence 898874 56578999999999999999984
No 355
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=95.19 E-value=0.23 Score=45.07 Aligned_cols=127 Identities=16% Similarity=0.171 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC-ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDL-SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG 238 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~-~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg 238 (328)
+.+++..++..++. .+.||++.+..++ +.+++...++.+ +++|+++|.+=..... + ..|-..|
T Consensus 74 ~~em~~~~~~I~r~----~~~pviaD~d~Gyg~~~~v~~~v~~l--~~aGaagv~iED~~~~-------k---rcGh~~g 137 (305)
T 3ih1_A 74 STEVAERARDLVRA----TDLPVLVDIDTGFGGVLNVARTAVEM--VEAKVAAVQIEDQQLP-------K---KCGHLNG 137 (305)
T ss_dssp HHHHHHHHHHHHHH----HCCCEEEECTTCSSSHHHHHHHHHHH--HHTTCSEEEEECBCSS-------C---CTTCTTC
T ss_pred HHHHHHHHHHHHHh----cCCCEEEECCCCCCCHHHHHHHHHHH--HHhCCcEEEECCCCCC-------c---ccCCCCC
Confidence 34444444444332 4789999998775 334566778888 8999999988654321 0 1122345
Q ss_pred CcCchHH--HHHHHHHHHHcCCCccEEEecCCC-------CHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 239 EPLRNKS--TELISEMYKLTKGKLPIIGVGGVF-------SGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 239 ~~~~~~~--l~~v~~i~~~~~~~ipvia~GGI~-------s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
..+.|.. .+.|+.++++ ..++-|++=..-. ..+++..+.++|||+|.+=.. ..++.++++.+.+
T Consensus 138 k~l~~~~e~~~rI~Aa~~A-~~~~~I~ARtda~~~~g~~~ai~Ra~ay~eAGAD~i~~e~~---~~~~~~~~i~~~~ 210 (305)
T 3ih1_A 138 KKLVTTEELVQKIKAIKEV-APSLYIVARTDARGVEGLDEAIERANAYVKAGADAIFPEAL---QSEEEFRLFNSKV 210 (305)
T ss_dssp CCBCCHHHHHHHHHHHHHH-CTTSEEEEEECCHHHHCHHHHHHHHHHHHHHTCSEEEETTC---CSHHHHHHHHHHS
T ss_pred CcccCHHHHHHHHHHHHHc-CCCeEEEEeeccccccCHHHHHHHHHHHHHcCCCEEEEcCC---CCHHHHHHHHHHc
Confidence 5555543 4455555555 3234444433321 224455566799999987432 2356677776654
No 356
>4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A
Probab=95.11 E-value=0.26 Score=46.71 Aligned_cols=122 Identities=11% Similarity=0.049 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+++++.++.... ++..+-+..... .+...+.+++||++ ++ .++.|.+-....++.++...+++.
T Consensus 190 ~~~~~~a~~~~~~G~~~~K~k~g~~----------~~~~~~~v~~vR~~---~g--~~~~l~vDaN~~~~~~~A~~~~~~ 254 (412)
T 4h1z_A 190 AKRAELAAAWQAKGFSSFKFASPVA----------DDGVAKEMEILRER---LG--PAVRIACDMHWAHTASEAVALIKA 254 (412)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGGC----------TTCHHHHHHHHHHH---HC--SSSEEEEECCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcceeccccccc----------hhhHHHHHHHHHhc---cC--CeEEEEeccccCCCHHHHHHHHHh
Confidence 344444444332 578777654311 11233445666665 34 678999998888998888999999
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+ .+.|+.+| .. |+.+..++..+++++.++ +||.+.=.+.+..|+.++++.|
T Consensus 255 l--~~~~l~~i-------Eq------------------P~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~~~ 305 (412)
T 4h1z_A 255 M--EPHGLWFA-------EA------------------PVRTEDIDGLARVAASVS--TAIAVGEEWRTVHDMVPRVARR 305 (412)
T ss_dssp H--GGGCEEEE-------EC------------------CSCTTCHHHHHHHHHHCS--SEEEECTTCCSHHHHHHHHHTT
T ss_pred h--ccccccee-------cC------------------CCCccchHHHHHHHhhcC--CccccCCcccchHhHHHHHHcC
Confidence 9 88876655 11 122233566788888887 9999988999999999999987
Q ss_pred -cCeeeeh
Q psy5880 282 -ASLVQIY 288 (328)
Q Consensus 282 -Ad~V~vg 288 (328)
+|.|++=
T Consensus 306 a~div~~d 313 (412)
T 4h1z_A 306 ALAIVQPE 313 (412)
T ss_dssp CCSEECCC
T ss_pred CCCEEEec
Confidence 7887754
No 357
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=95.09 E-value=0.043 Score=53.66 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=53.1
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
..+.++.+ .++|+|+|+++.+. |. ....++.++.+++.++ ++||++ |++.+.+++
T Consensus 256 ~~~~a~~~--~~aG~d~v~i~~~~----------------G~-----~~~~~~~i~~i~~~~~-~~pvi~-~~v~t~~~a 310 (514)
T 1jcn_A 256 DKYRLDLL--TQAGVDVIVLDSSQ----------------GN-----SVYQIAMVHYIKQKYP-HLQVIG-GNVVTAAQA 310 (514)
T ss_dssp HHHHHHHH--HHTTCSEEEECCSC----------------CC-----SHHHHHHHHHHHHHCT-TCEEEE-EEECSHHHH
T ss_pred hHHHHHHH--HHcCCCEEEeeccC----------------Cc-----chhHHHHHHHHHHhCC-CCceEe-cccchHHHH
Confidence 45667778 88999999875431 11 1234688999999883 489876 789999999
Q ss_pred HHHHHhccCeeeeh
Q psy5880 275 FEKIKAGASLVQIY 288 (328)
Q Consensus 275 ~~~l~~GAd~V~vg 288 (328)
.++.++|||+|.+|
T Consensus 311 ~~l~~aGad~I~vg 324 (514)
T 1jcn_A 311 KNLIDAGVDGLRVG 324 (514)
T ss_dssp HHHHHHTCSEEEEC
T ss_pred HHHHHcCCCEEEEC
Confidence 99999999999774
No 358
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=95.09 E-value=0.3 Score=45.48 Aligned_cols=150 Identities=11% Similarity=0.050 Sum_probs=81.2
Q ss_pred hhHHHHHHHhHHHHHHHhhc-CccceEEeccCC---------CCCcCccCCC-------chHHHHHHHHHHHHHhhhhcC
Q psy5880 34 FARMRAWVLQFWLLGILKFG-DVAHYFVVNVSS---------PNTANLRKLQ-------AKDQLKHLLKTVVETRNQLAL 96 (328)
Q Consensus 34 ~~~v~~~~l~~y~~~~~~l~-~~~~~v~~n~ss---------pN~~gl~~~~-------~~~~L~~ll~~v~~~~~~~~~ 96 (328)
...+. .++++|.+.++.+. --.|.|++|..| |++ ..+.++ ...-+.+++++|++.- +
T Consensus 153 ~~eI~-~~i~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~-N~R~D~yGGslenr~r~~~eiv~avr~~v---g- 226 (365)
T 2gou_A 153 KADIA-QVIADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEA-NNRSDEYGGSLENRLRFLDEVVAALVDAI---G- 226 (365)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGG-CCCCSTTSSSHHHHTHHHHHHHHHHHHHH---C-
T ss_pred HHHHH-HHHHHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCc-cCcCcccCcchhhhHHHHHHHHHHHHHHc---C-
Confidence 34554 46788999887643 236889988754 765 233332 1223455666666553 2
Q ss_pred CCCCcchhcccCCccccc--ccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhh
Q psy5880 97 KPLPPILVKIAPDLSLDE--KKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL 174 (328)
Q Consensus 97 ~~~~Pv~vki~~~l~~~~--n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~ 174 (328)
.. |+.+|+.+.-.... ...+.+...++++.++.++ +|+|++.-. ...+... .+ .++++.|++.
T Consensus 227 -~~-pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G--~d~i~v~~~--~~~~~~~--~~---~~~~~~i~~~---- 291 (365)
T 2gou_A 227 -AE-RVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHR--IVYLHIAEV--DWDDAPD--TP---VSFKRALREA---- 291 (365)
T ss_dssp -GG-GEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTT--CSEEEEECC--BTTBCCC--CC---HHHHHHHHHH----
T ss_pred -CC-cEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcC--CCEEEEeCC--CcCCCCC--cc---HHHHHHHHHH----
Confidence 23 89999987421110 0112334455556665555 999987532 1111100 11 2456667766
Q ss_pred cCCCCCCEEEEeCCCCChhhHHHHHHHhccccCC-ccEEEEe
Q psy5880 175 AVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCK-VDGLIVS 215 (328)
Q Consensus 175 ~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G-~d~i~~~ 215 (328)
.++||+.= .+++. ....+.+ +.| +|+|.+.
T Consensus 292 ---~~iPvi~~--Ggi~~---~~a~~~l---~~g~aD~V~ig 322 (365)
T 2gou_A 292 ---YQGVLIYA--GRYNA---EKAEQAI---NDGLADMIGFG 322 (365)
T ss_dssp ---CCSEEEEE--SSCCH---HHHHHHH---HTTSCSEEECC
T ss_pred ---CCCcEEEe--CCCCH---HHHHHHH---HCCCcceehhc
Confidence 67898763 33343 3333444 555 9998654
No 359
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=95.06 E-value=0.04 Score=50.11 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=59.4
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++++|||+.-|=.
T Consensus 22 iD~~~l~~lv~~l--i~~Gv~gl~v~GttGE~~------------~Ls----~~Er~~v~~~~~~~~~grvpviaGvg~~ 83 (300)
T 3eb2_A 22 VRADVMGRLCDDL--IQAGVHGLTPLGSTGEFA------------YLG----TAQREAVVRATIEAAQRRVPVVAGVAST 83 (300)
T ss_dssp BCHHHHHHHHHHH--HHTTCSCBBTTSGGGTGG------------GCC----HHHHHHHHHHHHHHHTTSSCBEEEEEES
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccCcc------------ccC----HHHHHHHHHHHHHHhCCCCcEEEeCCCC
Confidence 4556788899999 899999998877764321 011 1223456666777777789988554444
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhcCc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYHGP 296 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~gp 296 (328)
+-+++.+.. ++|||+|++....++. |
T Consensus 84 ~t~~ai~la~~a~~~Gadavlv~~P~y~~-~ 113 (300)
T 3eb2_A 84 SVADAVAQAKLYEKLGADGILAILEAYFP-L 113 (300)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEEECCSSC-C
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCC-C
Confidence 555555433 4899999999988643 5
No 360
>2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1
Probab=95.04 E-value=1.1 Score=41.38 Aligned_cols=135 Identities=10% Similarity=0.107 Sum_probs=90.1
Q ss_pred HHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 124 DSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 124 ~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
++.+.++.+.. ++..+-+.++.. +++.-.+.++++++. ++ .++.+.+.....++.++...+++.+
T Consensus 146 ~~~~~~~~~~~~g~~~~K~Kvg~~---------~~~~d~~~v~avr~~---~g--~~~~l~vDaN~~~~~~~A~~~~~~l 211 (370)
T 2chr_A 146 DLDSAVEMIERRRHNRFKVKLGFR---------SPQDDLIHMEALSNS---LG--SKAYLRVDVNQAWDEQVASVYIPEL 211 (370)
T ss_dssp HHHHHHHHHHTTSCCEEEEECSSS---------CHHHHHHHHHHHHHH---TT--TTSEEEEECTTCCCTHHHHHHHHHH
T ss_pred hHHHHHHHHhhcccceeecccccC---------ChHHHHHHHHHHHHh---cC--CCcEEEecCCCCCCHHHHHHHHHHH
Confidence 33444444433 477777665521 122233445566555 44 6788999998889988889999999
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG- 281 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G- 281 (328)
.+.++.+|- . |+.+..++..+++++..+ +||.+.=.+.+..|+.++++.|
T Consensus 212 --~~~~~~~iE-------e------------------P~~~~d~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~~~~~a 262 (370)
T 2chr_A 212 --EALGVELIE-------Q------------------PVGRENTQALRRLSDNNR--VAIMADESLSTLASAFDLARDRS 262 (370)
T ss_dssp --HTTTCCEEE-------C------------------CSCSSCHHHHHHHHHHCS--SEEEESSSCCSHHHHHHHHTTTC
T ss_pred --HhcCCceec-------C------------------CCChhhhhhhhHHhhhcc--CCccCCccCCCHHHHHHHHHcCC
Confidence 888877661 1 112223566788888887 9999988999999999999977
Q ss_pred cCeeeehhHHhhcCchHHHHH
Q psy5880 282 ASLVQIYTSFVYHGPPLVTRI 302 (328)
Q Consensus 282 Ad~V~vg~a~l~~gp~~~~~i 302 (328)
+|.|++=-.-. .|..-..++
T Consensus 263 ~d~i~~d~~~~-GGit~~~~i 282 (370)
T 2chr_A 263 VDVFSLKLCNM-GGVSATQKI 282 (370)
T ss_dssp CSEECCCHHHH-TSHHHHHHH
T ss_pred CcEEEeCCccc-CCHHHHHHH
Confidence 88888765443 344434444
No 361
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=95.02 E-value=0.039 Score=53.58 Aligned_cols=81 Identities=14% Similarity=0.191 Sum_probs=59.0
Q ss_pred CCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCC
Q psy5880 180 PPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGK 259 (328)
Q Consensus 180 ~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ 259 (328)
..+...++.... ..+-++.+ .++|+|.|.+... +|. ....++.++.+++.++ .
T Consensus 222 ~~vg~~i~~~~~---~~~~a~~l--~~~G~d~ivi~~a----------------~g~-----~~~~~~~i~~l~~~~p-~ 274 (491)
T 1zfj_A 222 LLVAAAVGVTSD---TFERAEAL--FEAGADAIVIDTA----------------HGH-----SAGVLRKIAEIRAHFP-N 274 (491)
T ss_dssp BCCEEEECSSTT---HHHHHHHH--HHHTCSEEEECCS----------------CTT-----CHHHHHHHHHHHHHCS-S
T ss_pred EEEEEeccCchh---HHHHHHHH--HHcCCCeEEEeee----------------cCc-----chhHHHHHHHHHHHCC-C
Confidence 344455554322 34557778 7899999987642 111 1234678888988883 4
Q ss_pred ccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 260 LPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 260 ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
+|++ .|+|.+.+++.+++++|||.|.+|
T Consensus 275 ~pvi-~G~v~t~~~a~~~~~~Gad~I~vg 302 (491)
T 1zfj_A 275 RTLI-AGNIATAEGARALYDAGVDVVKVG 302 (491)
T ss_dssp SCEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred CcEe-CCCccCHHHHHHHHHcCCCEEEEC
Confidence 9999 899999999999999999999887
No 362
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=95.00 E-value=0.033 Score=52.72 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=50.5
Q ss_pred HHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHH
Q psy5880 196 KDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAF 275 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~ 275 (328)
.+.++.+ .++|+|.|++..+. + . .....+.++++++.++ +||++ |++.|.+++.
T Consensus 146 ~e~~~~l--veaGvdvIvldta~-G---------------~-----~~~~~e~I~~ik~~~~--i~Vi~-g~V~t~e~A~ 199 (400)
T 3ffs_A 146 IERAKLL--VEAGVDVIVLDSAH-G---------------H-----SLNIIRTLKEIKSKMN--IDVIV-GNVVTEEATK 199 (400)
T ss_dssp CHHHHHH--HHHTCSEEEECCSC-C---------------S-----BHHHHHHHHHHHTTCC--CEEEE-EEECSHHHHH
T ss_pred HHHHHHH--HHcCCCEEEEeCCC-C---------------C-----cccHHHHHHHHHhcCC--CeEEE-eecCCHHHHH
Confidence 4567788 89999998663221 1 1 1123577888888775 88886 6889999999
Q ss_pred HHHHhccCeeeeh
Q psy5880 276 EKIKAGASLVQIY 288 (328)
Q Consensus 276 ~~l~~GAd~V~vg 288 (328)
++.++|||+|.+|
T Consensus 200 ~a~~aGAD~I~vG 212 (400)
T 3ffs_A 200 ELIENGADGIKVG 212 (400)
T ss_dssp HHHHTTCSEEEEC
T ss_pred HHHHcCCCEEEEe
Confidence 9999999999995
No 363
>4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A
Probab=94.99 E-value=0.58 Score=43.86 Aligned_cols=124 Identities=9% Similarity=0.086 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+.+.++.+... ++..+-+.++.++ .+.-.+.+++||++ ++ .++.|.+.....++.++..++++.
T Consensus 168 ~~~~~~~~~~~--G~~~~Kikvg~~~---------~~~d~~~v~avR~~---~G--~~~~l~vDaN~~~~~~~A~~~~~~ 231 (388)
T 4h83_A 168 IADEMHNYQEL--GLAGVKFKVGGLS---------AAEDAARITAAREA---AG--DDFIICIDANQGYKPAVAVDLSRR 231 (388)
T ss_dssp HHHHHHHHHHH--TBSEEEEECSSSC---------HHHHHHHHHHHHHH---HC--SSSEEEEECTTCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCceEeecCCCCC---------HHHHHHHHHHHHHh---cC--CCeEEEEecCcCCCHHHHHHHHHH
Confidence 33333333333 4888887765221 12223456666665 44 678999999988998888999999
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCch-HHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRN-KSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~-~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
+ .+.++.+|- . |+.+ ..++..+++++..+ +||.+.=.+.+..|+.++++.
T Consensus 232 l--~~~~~~~iE-------e------------------P~~~~~d~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~i~~ 282 (388)
T 4h83_A 232 I--ADLNIRWFE-------E------------------PVEWHNDKRSMRDVRYQGS--VPVCAGQTEFSASGCRDLMET 282 (388)
T ss_dssp T--TTSCCCCEE-------S------------------CBCSTTHHHHHHHHHHHSS--SCEEECTTCSSHHHHHHHHHH
T ss_pred h--hhcCcceee-------c------------------CcccccchHHHHHHHhhcC--CCccCCccccChHhHHHHHHc
Confidence 9 888776651 1 1111 23566778888887 999999999999999999998
Q ss_pred c-cCeeeehhH
Q psy5880 281 G-ASLVQIYTS 290 (328)
Q Consensus 281 G-Ad~V~vg~a 290 (328)
| +|.|++=-.
T Consensus 283 ~a~d~i~~d~~ 293 (388)
T 4h83_A 283 GAIDVCNFDSS 293 (388)
T ss_dssp TCCSEECCCGG
T ss_pred CCCCeEeecce
Confidence 8 888887543
No 364
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=94.96 E-value=0.37 Score=41.71 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=59.0
Q ss_pred CEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCc
Q psy5880 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKL 260 (328)
Q Consensus 181 Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~i 260 (328)
|++.=++. .+.++..++++.+ .+.|++.|-+..+. +..++.++++++.++ +
T Consensus 18 ~ii~vir~-~~~~~~~~~~~al--~~gGv~~iel~~k~------------------------~~~~~~i~~l~~~~~-~- 68 (224)
T 1vhc_A 18 KIVPVIAL-DNADDILPLADTL--AKNGLSVAEITFRS------------------------EAAADAIRLLRANRP-D- 68 (224)
T ss_dssp CEEEEECC-SSGGGHHHHHHHH--HHTTCCEEEEETTS------------------------TTHHHHHHHHHHHCT-T-
T ss_pred CeEEEEeC-CCHHHHHHHHHHH--HHcCCCEEEEeccC------------------------chHHHHHHHHHHhCc-C-
Confidence 55544444 3455788999999 99999998766322 123577888888876 2
Q ss_pred cEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 261 PIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 261 pvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
-+++.|-+.+.+++..++++|||+|..+
T Consensus 69 l~vgaGtvl~~d~~~~A~~aGAd~v~~p 96 (224)
T 1vhc_A 69 FLIAAGTVLTAEQVVLAKSSGADFVVTP 96 (224)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCSEEECS
T ss_pred cEEeeCcEeeHHHHHHHHHCCCCEEEEC
Confidence 4567777999999999999999999766
No 365
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=94.95 E-value=0.14 Score=47.95 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=66.9
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCcc---chhhh-----cccc---ccccC-------CCCCCc
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVD---RYEYL-----DARY---KEETG-------GLSGEP 240 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~---~~~~~-----~~~~---~~~~g-------g~sg~~ 240 (328)
.-|.++.+-...+.+...++++.+ +++|+++|.++-.... +.... .|.. ++... ...|+.
T Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a--~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~ 199 (370)
T 1gox_A 122 PGIRFFQLYVYKDRNVVAQLVRRA--ERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSG 199 (370)
T ss_dssp CCCEEEEECCBSSHHHHHHHHHHH--HHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------
T ss_pred CCCceEEEecCCCchHHHHHHHHH--HHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCcc
Confidence 368899885444555677889999 8999999987644321 11000 0000 00000 011111
Q ss_pred C---------chHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehh
Q psy5880 241 L---------RNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 241 ~---------~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~ 289 (328)
. ....++.++.+++.++ +||+ ++|+.+++++..+.++|||+|.++.
T Consensus 200 ~~~~v~~~~~~~~~~~~i~~l~~~~~--~pv~-vK~~~~~e~a~~a~~~Gad~I~vs~ 254 (370)
T 1gox_A 200 LSSYVAGQIDRSLSWKDVAWLQTITS--LPIL-VKGVITAEDARLAVQHGAAGIIVSN 254 (370)
T ss_dssp HHHHHHHTBCTTCCHHHHHHHHHHCC--SCEE-EECCCSHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHhhcCccchHHHHHHHHHHhC--CCEE-EEecCCHHHHHHHHHcCCCEEEECC
Confidence 0 1224577888998886 9998 4788999999999999999999853
No 366
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=94.95 E-value=0.079 Score=50.13 Aligned_cols=79 Identities=20% Similarity=0.357 Sum_probs=56.2
Q ss_pred CEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCc
Q psy5880 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKL 260 (328)
Q Consensus 181 Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~i 260 (328)
++.+-+... ++..+.++.+ .++|+|+|.+. ... |. ....++.++.+++.++ ++
T Consensus 143 ~~~~~i~~~---~~~~~~a~~~--~~~G~d~i~i~-~~~------------------g~--~~~~~e~i~~ir~~~~-~~ 195 (404)
T 1eep_A 143 RVGAAVSID---IDTIERVEEL--VKAHVDILVID-SAH------------------GH--STRIIELIKKIKTKYP-NL 195 (404)
T ss_dssp CCEEEECSC---TTHHHHHHHH--HHTTCSEEEEC-CSC------------------CS--SHHHHHHHHHHHHHCT-TC
T ss_pred eEEEEeCCC---hhHHHHHHHH--HHCCCCEEEEe-CCC------------------CC--hHHHHHHHHHHHHHCC-CC
Confidence 345555432 2245566777 78999999773 211 11 1345678889999883 48
Q ss_pred cEEEecCCCCHHHHHHHHHhccCeeee
Q psy5880 261 PIIGVGGVFSGKDAFEKIKAGASLVQI 287 (328)
Q Consensus 261 pvia~GGI~s~~da~~~l~~GAd~V~v 287 (328)
||++ |++.+.+++..+.++|||+|.+
T Consensus 196 pviv-~~v~~~~~a~~a~~~Gad~I~v 221 (404)
T 1eep_A 196 DLIA-GNIVTKEAALDLISVGADCLKV 221 (404)
T ss_dssp EEEE-EEECSHHHHHHHHTTTCSEEEE
T ss_pred eEEE-cCCCcHHHHHHHHhcCCCEEEE
Confidence 9887 7789999999999999999998
No 367
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=94.87 E-value=1.2 Score=40.08 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|++.++-+ | |....-..+.-.++++.+.+... .++||++=++...+ ++..++
T Consensus 20 ~~~l~~lv~~li~~G--v~gl~~~Gt---t-GE~~~Ls~~Er~~v~~~~~~~~~-----gr~pviaGvg~~~t-~~ai~l 87 (292)
T 2vc6_A 20 EVALHDLVEWQIEEG--SFGLVPCGT---T-GESPTLSKSEHEQVVEITIKTAN-----GRVPVIAGAGSNST-AEAIAF 87 (292)
T ss_dssp HHHHHHHHHHHHHTT--CSEEETTSG---G-GTGGGSCHHHHHHHHHHHHHHHT-----TSSCBEEECCCSSH-HHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc---c-cChhhCCHHHHHHHHHHHHHHhC-----CCCcEEEecCCccH-HHHHHH
Confidence 345566666555544 899975433 1 32222233445566666665532 46899998877644 467889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 88 a~~A--~~~Gadavlv~~P~y 106 (292)
T 2vc6_A 88 VRHA--QNAGADGVLIVSPYY 106 (292)
T ss_dssp HHHH--HHTTCSEEEEECCCS
T ss_pred HHHH--HHcCCCEEEEcCCCC
Confidence 9999 999999998876544
No 368
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=94.83 E-value=0.3 Score=41.33 Aligned_cols=119 Identities=16% Similarity=0.071 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEE--EeCCCCChhhHHHHHH
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILV--KIAPDLSLDEKKDIAD 200 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~v--Kl~~~~~~~~~~~~a~ 200 (328)
++..+.++.+..++|.+++.+ |+. .. .-.++++.+|+.. .++|+.+ |+... ...+++
T Consensus 13 ~~~~~~~~~~~~~~diie~G~--p~~-----~~---~g~~~i~~ir~~~------~~~~i~~~~~~~~~-----~~~~~~ 71 (211)
T 3f4w_A 13 PEAMVFMDKVVDDVDIIEVGT--PFL-----IR---EGVNAIKAIKEKY------PHKEVLADAKIMDG-----GHFESQ 71 (211)
T ss_dssp HHHHHHHHHHGGGCSEEEECH--HHH-----HH---HTTHHHHHHHHHC------TTSEEEEEEEECSC-----HHHHHH
T ss_pred HHHHHHHHHhhcCccEEEeCc--HHH-----Hh---ccHHHHHHHHHhC------CCCEEEEEEEeccc-----hHHHHH
Confidence 333344444434699999754 442 00 1135566666541 3678865 44432 234577
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHH-HHHHHHHHHHcCCCccEEE-ecCCCCH-HHHHHH
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKS-TELISEMYKLTKGKLPIIG-VGGVFSG-KDAFEK 277 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~-l~~v~~i~~~~~~~ipvia-~GGI~s~-~da~~~ 277 (328)
.+ .++|+|+++++.... ... -+.++.+++. + ++++. .=+..++ +.+.++
T Consensus 72 ~~--~~~Gad~v~v~~~~~-----------------------~~~~~~~~~~~~~~-g--~~~~v~~~~~~t~~~~~~~~ 123 (211)
T 3f4w_A 72 LL--FDAGADYVTVLGVTD-----------------------VLTIQSCIRAAKEA-G--KQVVVDMICVDDLPARVRLL 123 (211)
T ss_dssp HH--HHTTCSEEEEETTSC-----------------------HHHHHHHHHHHHHH-T--CEEEEECTTCSSHHHHHHHH
T ss_pred HH--HhcCCCEEEEeCCCC-----------------------hhHHHHHHHHHHHc-C--CeEEEEecCCCCHHHHHHHH
Confidence 78 899999999875321 011 2344445544 3 55554 2456676 557788
Q ss_pred HHhccCeeeehhH
Q psy5880 278 IKAGASLVQIYTS 290 (328)
Q Consensus 278 l~~GAd~V~vg~a 290 (328)
.+.|+|.|.+..+
T Consensus 124 ~~~g~d~i~v~~g 136 (211)
T 3f4w_A 124 EEAGADMLAVHTG 136 (211)
T ss_dssp HHHTCCEEEEECC
T ss_pred HHcCCCEEEEcCC
Confidence 8899999887543
No 369
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=94.82 E-value=0.12 Score=48.56 Aligned_cols=121 Identities=12% Similarity=0.090 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.. ++..+-+.++ |.. -.+.+++||++ + .++.|.+.....++.++. ++++
T Consensus 162 ~e~~~~~a~~~~~~G~~~~KiKvg-~~~-----------d~~~v~avr~a---~---~~~~l~vDaN~~~~~~~a-~~~~ 222 (393)
T 1wuf_A 162 VETLLQLVNQYVDQGYERVKLKIA-PNK-----------DIQFVEAVRKS---F---PKLSLMADANSAYNREDF-LLLK 222 (393)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECB-TTB-----------SHHHHHHHHTT---C---TTSEEEEECTTCCCGGGH-HHHH
T ss_pred HHHHHHHHHHHHHHhhHhheeccC-hHH-----------HHHHHHHHHHH---c---CCCEEEEECCCCCCHHHH-HHHH
Confidence 3445555554433 6888887664 211 13456666654 2 357788888888888888 8888
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.++.+|- .| ..+..++..+++++.++ +||.+.-.+.+..++.++++.
T Consensus 223 ~l--~~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~i~~ 273 (393)
T 1wuf_A 223 EL--DQYDLEMIE-------QP------------------FGTKDFVDHAWLQKQLK--TRICLDENIRSVKDVEQAHSI 273 (393)
T ss_dssp TT--GGGTCSEEE-------CC------------------SCSSCSHHHHHHHTTCS--SEEEECTTCCSHHHHHHHHHH
T ss_pred HH--HhCCCeEEE-------CC------------------CCCcCHHHHHHHHHhCC--CCEEECCCcCCHHHHHHHHHh
Confidence 88 777777662 11 11112345677777776 999999999999999999998
Q ss_pred c-cCeeeehhH
Q psy5880 281 G-ASLVQIYTS 290 (328)
Q Consensus 281 G-Ad~V~vg~a 290 (328)
| +|.|++=-.
T Consensus 274 ~a~d~v~ik~~ 284 (393)
T 1wuf_A 274 GSCRAINLKLA 284 (393)
T ss_dssp TCCSEEEECTG
T ss_pred CCCCEEEeChh
Confidence 8 799987543
No 370
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=94.80 E-value=0.1 Score=50.96 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=57.8
Q ss_pred CCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCC
Q psy5880 180 PPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGK 259 (328)
Q Consensus 180 ~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ 259 (328)
.++.+-+....+ ..+.++.+ .++|+|.|.+...... ....++.++++++.++ +
T Consensus 245 l~V~aavg~~~d---~~era~aL--veaGvd~I~Id~a~g~---------------------~~~v~~~i~~i~~~~~-~ 297 (511)
T 3usb_A 245 LLVGAAVGVTAD---AMTRIDAL--VKASVDAIVLDTAHGH---------------------SQGVIDKVKEVRAKYP-S 297 (511)
T ss_dssp BCCEEEECSSTT---HHHHHHHH--HHTTCSEEEEECSCTT---------------------SHHHHHHHHHHHHHCT-T
T ss_pred eeeeeeeeeccc---hHHHHHHH--HhhccceEEecccccc---------------------hhhhhhHHHHHHHhCC-C
Confidence 455555544332 45567778 8999999987643110 1234678899998875 4
Q ss_pred ccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 260 LPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 260 ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
+||+ .|+|.+.+++.++.++|||+|.+|
T Consensus 298 ~~vi-~g~v~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 298 LNII-AGNVATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp SEEE-EEEECSHHHHHHHHHHTCSEEEEC
T ss_pred ceEE-eeeeccHHHHHHHHHhCCCEEEEC
Confidence 7777 578999999999999999999863
No 371
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}
Probab=94.79 E-value=0.11 Score=46.19 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=52.6
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHH--
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK-- 272 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~-- 272 (328)
...+++.. .++|++|++++. .-++.+|+.++. -.++.+.||+-.-
T Consensus 146 v~~~A~~a--~~~G~dGvV~s~------------------------------~e~~~ir~~~~~-~f~~vtPGIr~~g~~ 192 (259)
T 3tfx_A 146 VLSLAKMA--KHSGADGVICSP------------------------------LEVKKLHENIGD-DFLYVTPGIRPAGNA 192 (259)
T ss_dssp HHHHHHHH--HHTTCCEEECCG------------------------------GGHHHHHHHHCS-SSEEEECCCCCC---
T ss_pred HHHHHHHH--HHhCCCEEEECH------------------------------HHHHHHHhhcCC-ccEEEcCCcCCCCCC
Confidence 44677777 789999997652 113556666653 3477889987432
Q ss_pred --H------HHHHHHhccCeeeehhHHhhc-Cch-HHHHHHHHHH
Q psy5880 273 --D------AFEKIKAGASLVQIYTSFVYH-GPP-LVTRIKSELE 307 (328)
Q Consensus 273 --d------a~~~l~~GAd~V~vg~a~l~~-gp~-~~~~i~~~l~ 307 (328)
| +.+++++|||.+.+||++... +|. .+++++++++
T Consensus 193 ~gDQ~Rv~T~~~a~~aGad~iVvGr~I~~a~dp~~a~~~i~~~~~ 237 (259)
T 3tfx_A 193 KDDQSRVATPKMAKEWGSSAIVVGRPITLASDPKAAYEAIKKEFN 237 (259)
T ss_dssp --------CHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHHT
T ss_pred cCCccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 1 667889999999999999742 342 3455554443
No 372
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=94.75 E-value=0.062 Score=52.19 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=54.1
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..+.++.+ .++|+|.|.++... |. ....++.++.+++.++ ++||+. |++.+.++
T Consensus 237 ~~~~~a~~l--~~aGvd~v~i~~~~----------------G~-----~~~~~e~i~~i~~~~p-~~pvi~-g~~~t~e~ 291 (494)
T 1vrd_A 237 ETMERVEKL--VKAGVDVIVIDTAH----------------GH-----SRRVIETLEMIKADYP-DLPVVA-GNVATPEG 291 (494)
T ss_dssp THHHHHHHH--HHTTCSEEEECCSC----------------CS-----SHHHHHHHHHHHHHCT-TSCEEE-EEECSHHH
T ss_pred hHHHHHHHH--HHhCCCEEEEEecC----------------Cc-----hHHHHHHHHHHHHHCC-CceEEe-CCcCCHHH
Confidence 356677888 89999999875421 11 1235688999999884 489877 77899999
Q ss_pred HHHHHHhccCeeeeh
Q psy5880 274 AFEKIKAGASLVQIY 288 (328)
Q Consensus 274 a~~~l~~GAd~V~vg 288 (328)
+..+.++|||+|.++
T Consensus 292 a~~l~~~G~d~I~v~ 306 (494)
T 1vrd_A 292 TEALIKAGADAVKVG 306 (494)
T ss_dssp HHHHHHTTCSEEEEC
T ss_pred HHHHHHcCCCEEEEc
Confidence 999999999999984
No 373
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=94.68 E-value=0.14 Score=46.30 Aligned_cols=112 Identities=19% Similarity=0.150 Sum_probs=68.7
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc-
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT- 256 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~- 256 (328)
.++||++|-....+.+++...++.+ ...|-.-+++.-+... + +.......+..+..+++..
T Consensus 131 ~~kPV~lk~G~~~t~~ei~~Av~~i--~~~Gn~~i~L~~rg~~---------------~-~y~~~~~dl~~i~~lk~~~~ 192 (292)
T 1o60_A 131 TGAVINVKKPQFLSPSQMGNIVEKI--EECGNDKIILCDRGTN---------------F-GYDNLIVDMLGFSVMKKASK 192 (292)
T ss_dssp TTCEEEEECCTTSCGGGHHHHHHHH--HHTTCCCEEEEECCEE---------------C-STTCEECCTTHHHHHHHHTT
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHH--HHcCCCeEEEEECCCC---------------C-CCCccccCHHHHHHHHhhCC
Confidence 5899999998877777889989998 8889866666543322 1 1111112345666788876
Q ss_pred CCCccEEE-----------ecCCCCH------HHHHHHHHhccCeeeehhHH-----hhc-----CchHHHHHHHHHHHH
Q psy5880 257 KGKLPIIG-----------VGGVFSG------KDAFEKIKAGASLVQIYTSF-----VYH-----GPPLVTRIKSELEEL 309 (328)
Q Consensus 257 ~~~ipvia-----------~GGI~s~------~da~~~l~~GAd~V~vg~a~-----l~~-----gp~~~~~i~~~l~~~ 309 (328)
. +||+. +|+-+.+ .-+..++.+||++++|=+-+ +.+ .|+-++++.+.++..
T Consensus 193 ~--~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H~~~d~al~Dg~~sl~p~~l~~lv~~ir~i 270 (292)
T 1o60_A 193 G--SPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHPNPNQAKCDGPSALPLSALEGFVSQMKAI 270 (292)
T ss_dssp S--CCEEEEHHHHCC------------CTTHHHHHHHHHHHCCSEEEEEEESSGGGCSSCCTTCEEGGGHHHHHHHHHHH
T ss_pred C--CCEEEECCCcccccCccccCCCCChhHHHHHHHHHHHcCCCEEEEEecCCcccCCchhhcCCCHHHHHHHHHHHHHH
Confidence 4 89988 3444444 34456778999977775533 112 255577777766543
No 374
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=94.64 E-value=0.09 Score=51.25 Aligned_cols=71 Identities=24% Similarity=0.313 Sum_probs=53.7
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..+-++.| .++|+|.|++-... |++ ...++.++.+++..+ +++|| .|.|.|++.
T Consensus 281 d~~eR~~aL--v~AGvD~iviD~ah----------------Ghs-----~~v~~~i~~ik~~~p-~~~vi-aGNVaT~e~ 335 (556)
T 4af0_A 281 GDKDRLKLL--AEAGLDVVVLDSSQ----------------GNS-----VYQIEFIKWIKQTYP-KIDVI-AGNVVTREQ 335 (556)
T ss_dssp HHHHHHHHH--HHTTCCEEEECCSC----------------CCS-----HHHHHHHHHHHHHCT-TSEEE-EEEECSHHH
T ss_pred cHHHHHHHH--HhcCCcEEEEeccc----------------ccc-----HHHHHHHHHHHhhCC-cceEE-eccccCHHH
Confidence 455667888 89999999764321 111 234788999999885 46655 589999999
Q ss_pred HHHHHHhccCeeeehh
Q psy5880 274 AFEKIKAGASLVQIYT 289 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~ 289 (328)
+..++.+|||+|-||-
T Consensus 336 a~~Li~aGAD~vkVGi 351 (556)
T 4af0_A 336 AAQLIAAGADGLRIGM 351 (556)
T ss_dssp HHHHHHHTCSEEEECS
T ss_pred HHHHHHcCCCEEeecC
Confidence 9999999999997764
No 375
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=94.60 E-value=0.36 Score=42.75 Aligned_cols=111 Identities=14% Similarity=0.034 Sum_probs=64.4
Q ss_pred CCChhhHHHHHHHhccccCCccEEEEecCCccchhhhcccc-----ccccCCCCCCcCchHHHHHHHHHHHHcCCCccEE
Q psy5880 189 DLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY-----KEETGGLSGEPLRNKSTELISEMYKLTKGKLPII 263 (328)
Q Consensus 189 ~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~-----~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvi 263 (328)
+.+.++..++++.+ .++|+|.|-+...+.. |..+.|.. .....|. .....++.++++++.++ ++|++
T Consensus 27 ~p~~~~~~~~~~~l--~~~G~D~IElG~P~sd-P~adgp~i~~a~~~al~~G~----~~~~~~~~v~~ir~~~~-~~Pi~ 98 (262)
T 2ekc_A 27 YPDYETSLKAFKEV--LKNGTDILEIGFPFSD-PVADGPTIQVAHEVALKNGI----RFEDVLELSETLRKEFP-DIPFL 98 (262)
T ss_dssp SSCHHHHHHHHHHH--HHTTCSEEEEECCCSC-CTTSCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHCT-TSCEE
T ss_pred CCChHHHHHHHHHH--HHcCCCEEEECCCCCC-cccccHHHHHHHHHHHHcCC----CHHHHHHHHHHHHhhcC-CCCEE
Confidence 34556788999999 9999999988654322 11110000 0001111 01234677899998872 39999
Q ss_pred EecCCCC-------HHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCC
Q psy5880 264 GVGGVFS-------GKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYN 316 (328)
Q Consensus 264 a~GGI~s-------~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~ 316 (328)
..| ..+ .+.+.++.++|+|.|.+...- + .+ ...+...+.++|+.
T Consensus 99 ~m~-y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~----~---ee-~~~~~~~~~~~gl~ 149 (262)
T 2ekc_A 99 LMT-YYNPIFRIGLEKFCRLSREKGIDGFIVPDLP----P---EE-AEELKAVMKKYVLS 149 (262)
T ss_dssp EEC-CHHHHHHHCHHHHHHHHHHTTCCEEECTTCC----H---HH-HHHHHHHHHHTTCE
T ss_pred EEe-cCcHHHHhhHHHHHHHHHHcCCCEEEECCCC----H---HH-HHHHHHHHHHcCCc
Confidence 863 333 255666778999988875321 1 22 23345566777753
No 376
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=94.57 E-value=0.7 Score=39.50 Aligned_cols=120 Identities=13% Similarity=0.002 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCE--EEEeCCCCChhhHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPI--LVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv--~vKl~~~~~~~~~~~~a 199 (328)
.++..+.++.++.+.|.+|+.+- |+. .+-.++++++|+.. .+.|+ -+|+-. . ...++
T Consensus 18 ~~~~~~~~~~~~~~vd~ie~g~~-~~~---------~~G~~~i~~lr~~~------~~~~i~ld~~l~d---~--p~~~~ 76 (218)
T 3jr2_A 18 LTDAVAVASNVASYVDVIEVGTI-LAF---------AEGMKAVSTLRHNH------PNHILVCDMKTTD---G--GAILS 76 (218)
T ss_dssp HHHHHHHHHHHGGGCSEEEECHH-HHH---------HHTTHHHHHHHHHC------TTSEEEEEEEECS---C--HHHHH
T ss_pred HHHHHHHHHHhcCCceEEEeCcH-HHH---------hcCHHHHHHHHHhC------CCCcEEEEEeecc---c--HHHHH
Confidence 34444444444446899998642 111 11135666666651 24455 556642 1 23466
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEE-ecCCCCHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIG-VGGVFSGKDAFEKI 278 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia-~GGI~s~~da~~~l 278 (328)
+.+ .++|+|+++++..... ....+.++.+++. + +..+. .=|+.|++++.++.
T Consensus 77 ~~~--~~aGad~i~vh~~~~~----------------------~~~~~~~~~~~~~-g--~~~~~d~l~~~T~~~~~~~~ 129 (218)
T 3jr2_A 77 RMA--FEAGADWITVSAAAHI----------------------ATIAACKKVADEL-N--GEIQIEIYGNWTMQDAKAWV 129 (218)
T ss_dssp HHH--HHHTCSEEEEETTSCH----------------------HHHHHHHHHHHHH-T--CEEEEECCSSCCHHHHHHHH
T ss_pred HHH--HhcCCCEEEEecCCCH----------------------HHHHHHHHHHHHh-C--CccceeeeecCCHHHHHHHH
Confidence 888 8999999999864211 0112344555554 3 55443 44557889999998
Q ss_pred HhccCeeeehh
Q psy5880 279 KAGASLVQIYT 289 (328)
Q Consensus 279 ~~GAd~V~vg~ 289 (328)
+.|+|.+.+.+
T Consensus 130 ~~g~d~v~~~~ 140 (218)
T 3jr2_A 130 DLGITQAIYHR 140 (218)
T ss_dssp HTTCCEEEEEC
T ss_pred HcCccceeeee
Confidence 88999876543
No 377
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=94.56 E-value=0.4 Score=42.28 Aligned_cols=145 Identities=12% Similarity=0.059 Sum_probs=87.9
Q ss_pred CcchhcccC-CcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCC
Q psy5880 100 PPILVKIAP-DLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVK 177 (328)
Q Consensus 100 ~Pv~vki~~-~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~ 177 (328)
.|+.+=|-| +-+ -..++++++.+.+.++.+.+ ++|+|.+-+..|+ |. -+.+.+.+++++.
T Consensus 52 ipv~vMIRPR~Gd---F~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~d--g~---iD~~~~~~Li~~a---------- 113 (256)
T 1twd_A 52 IPVHPIIRPRGGD---FCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVD--GN---VDMPRMEKIMAAA---------- 113 (256)
T ss_dssp SCEEEBCCSSSSC---SCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTT--SS---BCHHHHHHHHHHH----------
T ss_pred CceEEEECCCCCC---CcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCC--CC---cCHHHHHHHHHHh----------
Confidence 576555534 322 22356677777777777766 6999996555333 21 1334555555432
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.+.|+.+--.-+... +..+..+.| .+.|++.|-.++.... -..+++.++++.+..+
T Consensus 114 ~~~~vTFHRAfD~~~-d~~~ale~L--~~lG~~rILTSG~~~~---------------------a~~g~~~L~~Lv~~a~ 169 (256)
T 1twd_A 114 GPLAVTFHRAFDMCA-NPLYTLNNL--AELGIARVLTSGQKSD---------------------ALQGLSKIMELIAHRD 169 (256)
T ss_dssp TTSEEEECGGGGGCS-CHHHHHHHH--HHHTCCEEEECTTSSS---------------------TTTTHHHHHHHHTSSS
T ss_pred CCCcEEEECchhccC-CHHHHHHHH--HHcCCCEEECCCCCCC---------------------HHHHHHHHHHHHHhhC
Confidence 356777755444332 345667888 8899999964442211 1123567777766544
Q ss_pred CCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 258 GKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 258 ~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
++.|++.|||+ ++.+.+++.+|++.+-.+
T Consensus 170 -~i~Im~GgGv~-~~Ni~~l~~tGv~e~H~S 198 (256)
T 1twd_A 170 -APIIMAGAGVR-AENLHHFLDAGVLEVHSS 198 (256)
T ss_dssp -CCEEEEESSCC-TTTHHHHHHHTCSEEEEC
T ss_pred -CcEEEecCCcC-HHHHHHHHHcCCCeEeEC
Confidence 69999999995 455555568898887744
No 378
>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}
Probab=94.52 E-value=0.1 Score=45.72 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=45.0
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHH-
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK- 272 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~- 272 (328)
.+.++++.. .++|++|++++.+ -+..+|+.++.++ ++.+.||+-..
T Consensus 145 ~v~~~A~~a--~~~g~~GvV~s~~------------------------------e~~~ir~~~~~~f-l~vtPGIr~~g~ 191 (239)
T 3tr2_A 145 IVCRMATLA--KSAGLDGVVCSAQ------------------------------EAALLRKQFDRNF-LLVTPGIRLETD 191 (239)
T ss_dssp HHHHHHHHH--HHHTCCEEECCHH------------------------------HHHHHHTTCCTTS-EEEECCBC----
T ss_pred HHHHHHHHH--HHcCCCEEEECch------------------------------hHHHHHHhcCCCc-EEECCCcCCCCC
Confidence 345566766 7789999976531 1245677665334 67788887322
Q ss_pred H---------HHHHHHhccCeeeehhHHhh
Q psy5880 273 D---------AFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 273 d---------a~~~l~~GAd~V~vg~a~l~ 293 (328)
+ ..+++++|||.+.+||+++.
T Consensus 192 ~~~dQ~rv~t~~~~~~aGad~lVvGr~I~~ 221 (239)
T 3tr2_A 192 EKGDQKRVMTPRAAIQAGSDYLVIGRPITQ 221 (239)
T ss_dssp ------CCBCHHHHHHHTCSEEEECHHHHT
T ss_pred CcCcccccCCHHHHHHcCCCEEEEChHHhC
Confidence 2 55778899999999999964
No 379
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=94.51 E-value=0.73 Score=41.66 Aligned_cols=87 Identities=13% Similarity=0.163 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|+|.++-+ . |....-..+.-.++++.+.+... .++||++=++...+ ++..++
T Consensus 32 ~~~l~~lv~~li~~G--v~gl~v~Gt--T--GE~~~Ls~eEr~~v~~~~~~~~~-----grvpViaGvg~~~t-~~ai~l 99 (301)
T 1xky_A 32 FAKTTKLVNYLIDNG--TTAIVVGGT--T--GESPTLTSEEKVALYRHVVSVVD-----KRVPVIAGTGSNNT-HASIDL 99 (301)
T ss_dssp HHHHHHHHHHHHHTT--CCEEEESST--T--TTGGGSCHHHHHHHHHHHHHHHT-----TSSCEEEECCCSCH-HHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc--c--cChhhCCHHHHHHHHHHHHHHhC-----CCceEEeCCCCCCH-HHHHHH
Confidence 345555555555544 999987544 2 32222233444566666665532 47899998877544 467889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 100 a~~A--~~~Gadavlv~~P~y 118 (301)
T 1xky_A 100 TKKA--TEVGVDAVMLVAPYY 118 (301)
T ss_dssp HHHH--HHTTCSEEEEECCCS
T ss_pred HHHH--HhcCCCEEEEcCCCC
Confidence 9999 999999998876554
No 380
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=94.43 E-value=0.59 Score=40.45 Aligned_cols=79 Identities=20% Similarity=0.191 Sum_probs=59.1
Q ss_pred CEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCc
Q psy5880 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKL 260 (328)
Q Consensus 181 Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~i 260 (328)
|++.=++.. +.++..++++.+ .+.|++.|-+.... +..++.++++++.++ ++
T Consensus 27 ~ii~V~r~~-~~~~~~~~~~al--~~gGv~~iel~~k~------------------------~~~~~~i~~l~~~~~-~~ 78 (225)
T 1mxs_A 27 RILPVITIA-REEDILPLADAL--AAGGIRTLEVTLRS------------------------QHGLKAIQVLREQRP-EL 78 (225)
T ss_dssp SEEEEECCS-CGGGHHHHHHHH--HHTTCCEEEEESSS------------------------THHHHHHHHHHHHCT-TS
T ss_pred CEEEEEeCC-CHHHHHHHHHHH--HHCCCCEEEEecCC------------------------ccHHHHHHHHHHhCc-cc
Confidence 554444432 455788999999 99999998766322 224577888888875 34
Q ss_pred cEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 261 PIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 261 pvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
+++.|-+.+.+++..++++|||+|.++
T Consensus 79 -~igagtvl~~d~~~~A~~aGAd~v~~p 105 (225)
T 1mxs_A 79 -CVGAGTVLDRSMFAAVEAAGAQFVVTP 105 (225)
T ss_dssp -EEEEECCCSHHHHHHHHHHTCSSEECS
T ss_pred -EEeeCeEeeHHHHHHHHHCCCCEEEeC
Confidence 567778999999999999999999876
No 381
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=94.41 E-value=0.86 Score=41.06 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|++-++-+ . |....-..+.-.++++.+.+... .++||++=++.. +.++..++
T Consensus 27 ~~~l~~lv~~li~~G--v~gl~~~Gt--t--GE~~~Ls~~Er~~v~~~~~~~~~-----grvpviaGvg~~-~t~~ai~l 94 (297)
T 3flu_A 27 YEQLRDLIDWHIENG--TDGIVAVGT--T--GESATLSVEEHTAVIEAVVKHVA-----KRVPVIAGTGAN-NTVEAIAL 94 (297)
T ss_dssp HHHHHHHHHHHHHTT--CCEEEESST--T--TTGGGSCHHHHHHHHHHHHHHHT-----TSSCEEEECCCS-SHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEeCcc--c--cCcccCCHHHHHHHHHHHHHHhC-----CCCcEEEeCCCc-CHHHHHHH
Confidence 345556655555444 999987554 2 22221223344566666655532 468999977654 44568889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 95 a~~a--~~~Gadavlv~~P~y 113 (297)
T 3flu_A 95 SQAA--EKAGADYTLSVVPYY 113 (297)
T ss_dssp HHHH--HHTTCSEEEEECCCS
T ss_pred HHHH--HHcCCCEEEECCCCC
Confidence 9999 999999998876543
No 382
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=94.39 E-value=0.87 Score=40.89 Aligned_cols=87 Identities=7% Similarity=0.078 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|++.++-+ . |....-..+.-.++++.+.+... .++||++=++...+ ++..++
T Consensus 21 ~~~l~~lv~~li~~G--v~gl~~~Gt--t--GE~~~Ls~~Er~~v~~~~~~~~~-----gr~pviaGvg~~~t-~~ai~l 88 (292)
T 2ojp_A 21 RASLKKLIDYHVASG--TSAIVSVGT--T--GESATLNHDEHADVVMMTLDLAD-----GRIPVIAGTGANAT-AEAISL 88 (292)
T ss_dssp HHHHHHHHHHHHHHT--CCEEEESST--T--TTGGGSCHHHHHHHHHHHHHHHT-----TSSCEEEECCCSSH-HHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc--c--cchhhCCHHHHHHHHHHHHHHhC-----CCCcEEEecCCccH-HHHHHH
Confidence 345666666555555 999987544 2 32222223444566666665532 46899998877544 467889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 89 a~~a--~~~Gadavlv~~P~y 107 (292)
T 2ojp_A 89 TQRF--NDSGIVGCLTVTPYY 107 (292)
T ss_dssp HHHT--TTSSCSEEEEECCCS
T ss_pred HHHH--HhcCCCEEEECCCCC
Confidence 9999 999999998876554
No 383
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=94.38 E-value=0.86 Score=41.44 Aligned_cols=87 Identities=11% Similarity=0.109 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+.+..+++-....+ +|++.++-+ . |....-..+.-.++++.+.+... .++||++=++... .++..++
T Consensus 43 ~~~l~~lv~~li~~G--v~Gl~v~Gt--T--GE~~~Ls~~Er~~v~~~~v~~~~-----grvpViaGvg~~s-t~eai~l 110 (314)
T 3qze_A 43 WDSLAKLVDFHLQEG--TNAIVAVGT--T--GESATLDVEEHIQVIRRVVDQVK-----GRIPVIAGTGANS-TREAVAL 110 (314)
T ss_dssp HHHHHHHHHHHHHHT--CCEEEESSG--G--GTGGGCCHHHHHHHHHHHHHHHT-----TSSCEEEECCCSS-HHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc--c--cChhhCCHHHHHHHHHHHHHHhC-----CCCcEEEeCCCcC-HHHHHHH
Confidence 345566666555555 999987544 1 32221223344556666555532 4689999776653 4567889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 111 a~~A--~~~Gadavlv~~P~y 129 (314)
T 3qze_A 111 TEAA--KSGGADACLLVTPYY 129 (314)
T ss_dssp HHHH--HHTTCSEEEEECCCS
T ss_pred HHHH--HHcCCCEEEEcCCCC
Confidence 9999 999999998876544
No 384
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=94.35 E-value=0.15 Score=45.73 Aligned_cols=112 Identities=14% Similarity=0.056 Sum_probs=67.9
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHc-
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLT- 256 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~- 256 (328)
.++||++|-....+.+++...+..+ ...|-.-+++.-+... + +.......+..+..+++..
T Consensus 128 ~~kPV~lk~G~~~t~~e~~~A~~~i--~~~Gn~~i~L~~rg~~---------------~-~~~~~~~dl~~i~~lk~~~~ 189 (280)
T 2qkf_A 128 TGNVVNIKKPQFLSPSQMKNIVEKF--HEAGNGKLILCERGSS---------------F-GYDNLVVDMLGFGVMKQTCG 189 (280)
T ss_dssp TCCEEEEECCTTSCGGGHHHHHHHH--HHTTCCCEEEEECCEE---------------C-STTCEECCTTHHHHHHHHTT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH--HHcCCCeEEEEECCCC---------------C-CCCccccCHHHHHHHHHhCC
Confidence 6899999998877777888889988 8899866666544322 1 1111112345667788876
Q ss_pred CCCccEEEe-----------cCCCCH------HHHHHHHHhccCeeeehhHHh-----hc-----CchHHHHHHHHHHHH
Q psy5880 257 KGKLPIIGV-----------GGVFSG------KDAFEKIKAGASLVQIYTSFV-----YH-----GPPLVTRIKSELEEL 309 (328)
Q Consensus 257 ~~~ipvia~-----------GGI~s~------~da~~~l~~GAd~V~vg~a~l-----~~-----gp~~~~~i~~~l~~~ 309 (328)
+ +||+.. ||-+.+ .-+..++.+||++++|=+-+- .+ .|+-++++.+.++..
T Consensus 190 ~--~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~H~~~d~al~D~~~sl~p~~l~~lv~~i~~~ 267 (280)
T 2qkf_A 190 N--LPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCDGPSALPLHLLEDFLIRIKAL 267 (280)
T ss_dssp T--CCEEEEHHHHCC----------CHHHHHHHHHHHHHTTCCSEEEEEC----------------CCHHHHHHHHHHHH
T ss_pred C--CCEEEECCCCccccCccccccCCchhhHHHHHHHHHHcCCCEEEEeecCCcccCCCccccCCCHHHHHHHHHHHHHH
Confidence 4 899882 444433 334556678999888765441 11 355677777666543
No 385
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=94.33 E-value=0.31 Score=43.39 Aligned_cols=103 Identities=13% Similarity=0.003 Sum_probs=63.5
Q ss_pred CCCCEEEEeCCC-CChhhHHHHHHHhccccCCccEEEEecCCccchhhhcccc-----ccccCCCCCCcCchHHHHHHHH
Q psy5880 178 PLPPILVKIAPD-LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY-----KEETGGLSGEPLRNKSTELISE 251 (328)
Q Consensus 178 ~~~Pv~vKl~~~-~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~-----~~~~gg~sg~~~~~~~l~~v~~ 251 (328)
.+..++.=+..+ .+.+.+.++++.+ .++|+|.|.+...+.. |..+.|.. .....|.+ ....++.+++
T Consensus 16 ~~~ali~yi~aGdP~~~~~~~~~~~l--~~~GaD~iElgiPfSD-P~aDGp~Iq~a~~~AL~~G~~----~~~~~~~v~~ 88 (267)
T 3vnd_A 16 DKGAFVPFVTIGDPSPELSLKIIQTL--VDNGADALELGFPFSD-PLADGPVIQGANLRSLAAGTT----SSDCFDIITK 88 (267)
T ss_dssp TCCEEEEEEETTSSCHHHHHHHHHHH--HHTTCSSEEEECCCSC-CTTCCHHHHHHHHHHHHTTCC----HHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH--HHcCCCEEEECCCCCC-CCCCCHHHHHHHHHHHHcCCC----HHHHHHHHHH
Confidence 345566566544 4556788999999 9999999998765533 21111110 00012211 1234788999
Q ss_pred HHHH-cCCCccEEEecCCCCH------H-HHHHHHHhccCeeeehhH
Q psy5880 252 MYKL-TKGKLPIIGVGGVFSG------K-DAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 252 i~~~-~~~~ipvia~GGI~s~------~-da~~~l~~GAd~V~vg~a 290 (328)
+|+. .+ +||+.-+ ..++ + -+.++.++|+|.|.+...
T Consensus 89 ir~~~~~--~Pivlm~-Y~npv~~~g~e~f~~~~~~aGvdgvii~Dl 132 (267)
T 3vnd_A 89 VRAQHPD--MPIGLLL-YANLVFANGIDEFYTKAQAAGVDSVLIADV 132 (267)
T ss_dssp HHHHCTT--CCEEEEE-CHHHHHHHCHHHHHHHHHHHTCCEEEETTS
T ss_pred HHhcCCC--CCEEEEe-cCcHHHHhhHHHHHHHHHHcCCCEEEeCCC
Confidence 9987 55 9988874 3343 3 356667799999988643
No 386
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=94.31 E-value=0.91 Score=40.97 Aligned_cols=129 Identities=13% Similarity=0.165 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC--ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDL--SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLS 237 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~--~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~s 237 (328)
+.+++..++..++. .+.||++-+..++ +.++..+.++.+ .++|+++|.+=..... ...|-+.
T Consensus 63 ~~em~~~~~~I~~~----~~~PviaD~d~Gyg~~~~~~~~~v~~l--~~aGa~gv~iEd~~~~----------k~cgH~~ 126 (295)
T 1xg4_A 63 LDDVLTDIRRITDV----CSLPLLVDADIGFGSSAFNVARTVKSM--IKAGAAGLHIEDQVGA----------KRSGHRP 126 (295)
T ss_dssp HHHHHHHHHHHHHH----CCSCEEEECTTCSSSSHHHHHHHHHHH--HHHTCSEEEEECBCSS----------CCCTTSS
T ss_pred HHHHHHHHHHHHhh----CCCCEEecCCcccCCCHHHHHHHHHHH--HHcCCeEEEECCCCCC----------cccCCCC
Confidence 34444444444332 6789999998775 456677888888 8999999988654321 0112233
Q ss_pred CCcCchHH--HHHHHHHHHHc-CCCccEEEecCCC-------CHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHH
Q psy5880 238 GEPLRNKS--TELISEMYKLT-KGKLPIIGVGGVF-------SGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELE 307 (328)
Q Consensus 238 g~~~~~~~--l~~v~~i~~~~-~~~ipvia~GGI~-------s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~ 307 (328)
|..+.|.. .+.|+.++++- ..++-|++=..-. ..+++..+.++|||+|.+-. + .+++.++++.+.+.
T Consensus 127 gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~e~-~--~~~~~~~~i~~~~~ 203 (295)
T 1xg4_A 127 NKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEA-I--TELAMYRQFADAVQ 203 (295)
T ss_dssp SCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETT-C--CSHHHHHHHHHHHC
T ss_pred CCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHHHHcCCCEEEEeC-C--CCHHHHHHHHHHcC
Confidence 45555543 34455555443 2235555533321 12345566679999998754 2 24577888777654
No 387
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=94.27 E-value=0.63 Score=42.34 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|+|.++-+ | |....-..+.-.++++.+.+... .++||++=++. +.++..++
T Consensus 32 ~~~l~~lv~~li~~G--v~gl~v~Gt---T-GE~~~Ls~eEr~~vi~~~~~~~~-----grvpViaGvg~--st~~ai~l 98 (314)
T 3d0c_A 32 WKGLDDNVEFLLQNG--IEVIVPNGN---T-GEFYALTIEEAKQVATRVTELVN-----GRATVVAGIGY--SVDTAIEL 98 (314)
T ss_dssp HHHHHHHHHHHHHTT--CSEECTTSG---G-GTGGGSCHHHHHHHHHHHHHHHT-----TSSEEEEEECS--SHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc---c-CChhhCCHHHHHHHHHHHHHHhC-----CCCeEEecCCc--CHHHHHHH
Confidence 345556665555544 899865333 1 32222233445566666665532 47899999887 44568889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 99 a~~A--~~~Gadavlv~~P~y 117 (314)
T 3d0c_A 99 GKSA--IDSGADCVMIHQPVH 117 (314)
T ss_dssp HHHH--HHTTCSEEEECCCCC
T ss_pred HHHH--HHcCCCEEEECCCCC
Confidence 9999 999999998876544
No 388
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=94.16 E-value=0.76 Score=41.86 Aligned_cols=87 Identities=10% Similarity=0.094 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+.+..+++-....+ .|+|.++-+ . |....-..+.-.++++.+.+... .++||++=++.. +.++..++
T Consensus 44 ~~~l~~lv~~li~~G--v~Gi~v~Gt--T--GE~~~Ls~~Er~~v~~~~v~~~~-----grvpViaGvg~~-~t~~ai~l 111 (315)
T 3na8_A 44 LPALGRSIERLIDGG--VHAIAPLGS--T--GEGAYLSDPEWDEVVDFTLKTVA-----HRVPTIVSVSDL-TTAKTVRR 111 (315)
T ss_dssp HHHHHHHHHHHHHTT--CSEEECSSG--G--GTGGGSCHHHHHHHHHHHHHHHT-----TSSCBEEECCCS-SHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc--c--cChhhCCHHHHHHHHHHHHHHhC-----CCCcEEEecCCC-CHHHHHHH
Confidence 345566665555544 999976544 1 32221223344566666665532 468999977655 34568889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 112 a~~A--~~~Gadavlv~~P~y 130 (315)
T 3na8_A 112 AQFA--ESLGAEAVMVLPISY 130 (315)
T ss_dssp HHHH--HHTTCSEEEECCCCS
T ss_pred HHHH--HhcCCCEEEECCCCC
Confidence 9999 999999998876544
No 389
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=94.15 E-value=0.9 Score=40.78 Aligned_cols=87 Identities=10% Similarity=0.131 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ +|++.++-+ . |....-..+.-.++++.+.+... .++||++=++... .++..++
T Consensus 21 ~~~l~~lv~~li~~G--v~gl~~~Gt--t--GE~~~Ls~~Er~~v~~~~~~~~~-----gr~pviaGvg~~~-t~~ai~l 88 (291)
T 3tak_A 21 WKSLEKLVEWHIEQG--TNSIVAVGT--T--GEASTLSMEEHTQVIKEIIRVAN-----KRIPIIAGTGANS-TREAIEL 88 (291)
T ss_dssp HHHHHHHHHHHHHHT--CCEEEESST--T--TTGGGSCHHHHHHHHHHHHHHHT-----TSSCEEEECCCSS-HHHHHHH
T ss_pred HHHHHHHHHHHHHCC--CCEEEECcc--c--cccccCCHHHHHHHHHHHHHHhC-----CCCeEEEeCCCCC-HHHHHHH
Confidence 345666666555555 999986544 2 32211123344566666665532 4689999776653 4567889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 89 a~~a--~~~Gadavlv~~P~y 107 (291)
T 3tak_A 89 TKAA--KDLGADAALLVTPYY 107 (291)
T ss_dssp HHHH--HHHTCSEEEEECCCS
T ss_pred HHHH--HhcCCCEEEEcCCCC
Confidence 9999 999999998876543
No 390
>3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A*
Probab=94.13 E-value=0.34 Score=45.79 Aligned_cols=117 Identities=11% Similarity=-0.001 Sum_probs=78.5
Q ss_pred cccEEEEccCC-CCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEE
Q psy5880 135 VAHYFVVNVSS-PNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLI 213 (328)
Q Consensus 135 ~~d~ieiN~sc-Pn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~ 213 (328)
++..+-+.+.. |.. +. .+.+.-.+.+++||++ ++ .+++|.+.....++.++..++++.+ .+.++.+|-
T Consensus 174 Gf~~~K~Kv~~g~~~-g~---~~~~~di~~v~avRea---~G--~~~~L~vDaN~~w~~~~A~~~~~~L--e~~~l~~iE 242 (404)
T 3ekg_A 174 GFIGGKMPLHHGPSE-GE---EGLKKNLEELATMRER---VG--PDFWLMFDCWMSLDLNYATRLARGA--REYGLKWIE 242 (404)
T ss_dssp TCSEEEEECCCCGGG-HH---HHHHHHHHHHHHHHHH---HC--SSSEEEEECTTCCCHHHHHHHHHHH--GGGTCCEEE
T ss_pred CCCEEEEecCCCCcc-cc---ccHHHHHHHHHHHHHH---hC--CCCeEEecCCCCCCHHHHHHHHHHH--hhcCCcEEe
Confidence 47777776531 110 11 1223345556666665 44 6789999999889988888999999 888777661
Q ss_pred EecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccE-EEec-CCCCHHHHHHHHHhc-cCeeeehh
Q psy5880 214 VSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPI-IGVG-GVFSGKDAFEKIKAG-ASLVQIYT 289 (328)
Q Consensus 214 ~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipv-ia~G-GI~s~~da~~~l~~G-Ad~V~vg~ 289 (328)
. |..+..++..+++++.++ +|| |+.| .+.+..++.++++.| +|.|++=-
T Consensus 243 -------e------------------P~~~~d~~~~a~l~~~~~--~pi~Ia~gE~~~~~~~~~~li~~~a~dii~~d~ 294 (404)
T 3ekg_A 243 -------E------------------ALPPDDYWGYAELRRNAP--TGMMVTTGEHEATRWGFRMLLEMGCCDIIQPDV 294 (404)
T ss_dssp -------C------------------CSCTTCHHHHHHHHHHSC--TTCEEEECTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred -------c------------------CCCcccHHHHHHHHHhcC--CCeEEEecCccCCHHHHHHHHHcCCCCeEecCh
Confidence 1 112223566788888876 774 4444 488999999999987 88888643
No 391
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=94.09 E-value=0.9 Score=41.08 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|+|-++-+ + |....-..+.-.++++.+.+... .++||++=++...+ ++..++
T Consensus 36 ~~~l~~lv~~li~~G--v~gl~v~Gt--t--GE~~~Ls~~Er~~v~~~~~~~~~-----grvpviaGvg~~st-~~ai~l 103 (304)
T 3cpr_A 36 IAAGREVAAYLVDKG--LDSLVLAGT--T--GESPTTTAAEKLELLKAVREEVG-----DRAKLIAGVGTNNT-RTSVEL 103 (304)
T ss_dssp HHHHHHHHHHHHHTT--CCEEEESST--T--TTTTTSCHHHHHHHHHHHHHHHT-----TTSEEEEECCCSCH-HHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc--c--cChhhCCHHHHHHHHHHHHHHhC-----CCCcEEecCCCCCH-HHHHHH
Confidence 345566666555544 999987544 2 22211123344566666665532 46899998877544 467889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 104 a~~A--~~~Gadavlv~~P~y 122 (304)
T 3cpr_A 104 AEAA--ASAGADGLLVVTPYY 122 (304)
T ss_dssp HHHH--HHTTCSEEEEECCCS
T ss_pred HHHH--HhcCCCEEEECCCCC
Confidence 9999 999999998876544
No 392
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=94.09 E-value=0.79 Score=41.13 Aligned_cols=87 Identities=10% Similarity=0.156 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|++.++-+ . |....-..+.-.++++.+.+... .++||++=++...+ ++..++
T Consensus 20 ~~~l~~lv~~li~~G--v~gl~~~Gt--t--GE~~~Ls~~Er~~v~~~~~~~~~-----gr~pviaGvg~~~t-~~ai~l 87 (289)
T 2yxg_A 20 FDGLEENINFLIENG--VSGIVAVGT--T--GESPTLSHEEHKKVIEKVVDVVN-----GRVQVIAGAGSNCT-EEAIEL 87 (289)
T ss_dssp HHHHHHHHHHHHHTT--CSEEEESST--T--TTGGGSCHHHHHHHHHHHHHHHT-----TSSEEEEECCCSSH-HHHHHH
T ss_pred HHHHHHHHHHHHHCC--CCEEEECcc--c--cChhhCCHHHHHHHHHHHHHHhC-----CCCcEEEeCCCCCH-HHHHHH
Confidence 345566666555544 999987544 2 32222233444566666665532 46899998877544 467889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 88 a~~a--~~~Gadavlv~~P~y 106 (289)
T 2yxg_A 88 SVFA--EDVGADAVLSITPYY 106 (289)
T ss_dssp HHHH--HHHTCSEEEEECCCS
T ss_pred HHHH--HhcCCCEEEECCCCC
Confidence 9999 899999998876554
No 393
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=94.08 E-value=2.7 Score=37.85 Aligned_cols=151 Identities=14% Similarity=0.109 Sum_probs=81.2
Q ss_pred CCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEc--cC---CCCCcchhhhhhhHHHHHHHHHHHHHHHh
Q psy5880 99 LPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVN--VS---SPNTANLRKLQAKDQLKHLLKTVVETRNQ 173 (328)
Q Consensus 99 ~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN--~s---cPn~~g~~~~~~~~~~~~i~~~v~~~~~~ 173 (328)
..|+.+-++-+- + ....+...++...+++ +.++.|- .. |.+..+... -..+...+-+++.+++++
T Consensus 83 ~~PviaD~d~Gy--g----~~~~v~~~v~~l~~aG--aagv~iEDq~~~k~cGh~~gk~l-~~~~e~~~ri~Aa~~A~~- 152 (298)
T 3eoo_A 83 NLPLLVDIDTGW--G----GAFNIARTIRSFIKAG--VGAVHLEDQVGQKRCGHRPGKEC-VPAGEMVDRIKAAVDART- 152 (298)
T ss_dssp CSCEEEECTTCS--S----SHHHHHHHHHHHHHTT--CSEEEEECBCCCCCTTCCCCCCB-CCHHHHHHHHHHHHHHCS-
T ss_pred CCeEEEECCCCC--C----CHHHHHHHHHHHHHhC--CeEEEECCCCCCcccCCCCCCee-cCHHHHHHHHHHHHHhcc-
Confidence 357766655431 1 2233444455555555 7776552 22 322222211 122233333444444421
Q ss_pred hcCCCCCCEEEEeCCCC--ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHH
Q psy5880 174 LAVKPLPPILVKIAPDL--SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISE 251 (328)
Q Consensus 174 ~~~~~~~Pv~vKl~~~~--~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~ 251 (328)
..++-|+.|.-... ..++..+=++.. .++|+|.|.+.+.. ..+.+++
T Consensus 153 ---~~~~~I~ARTDa~~~~gldeai~Ra~ay--~~AGAD~if~~~~~--------------------------~~ee~~~ 201 (298)
T 3eoo_A 153 ---DETFVIMARTDAAAAEGIDAAIERAIAY--VEAGADMIFPEAMK--------------------------TLDDYRR 201 (298)
T ss_dssp ---STTSEEEEEECTHHHHHHHHHHHHHHHH--HHTTCSEEEECCCC--------------------------SHHHHHH
T ss_pred ---CCCeEEEEeehhhhhcCHHHHHHHHHhh--HhcCCCEEEeCCCC--------------------------CHHHHHH
Confidence 14455666764431 123444555666 88999999765421 1366788
Q ss_pred HHHHcCCCccEEEe---cCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 252 MYKLTKGKLPIIGV---GGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 252 i~~~~~~~ipvia~---GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
+.+.++ +|+.++ +|-+..-...++-+.|...|.++..++
T Consensus 202 ~~~~~~--~Pl~~n~~~~g~tp~~~~~eL~~lGv~~v~~~~~~~ 243 (298)
T 3eoo_A 202 FKEAVK--VPILANLTEFGSTPLFTLDELKGANVDIALYCCGAY 243 (298)
T ss_dssp HHHHHC--SCBEEECCTTSSSCCCCHHHHHHTTCCEEEECSHHH
T ss_pred HHHHcC--CCeEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHH
Confidence 888887 888664 442222235666678999999997775
No 394
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=94.05 E-value=0.25 Score=45.16 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC--ChhhHHHHHH
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL--SLDEKKDIAD 200 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~--~~~~~~~~a~ 200 (328)
.+++.++.+++ ..++.. +++. ..++.+.+.++.+++. .+.|+.|-+-... ..+++.+.++
T Consensus 29 ~~la~av~~aG--glG~i~---~~~~------~s~~~l~~~i~~i~~~-------~~~p~~v~l~v~~~~~~~~~~~~~~ 90 (328)
T 2gjl_A 29 AEMAAAVANAG--GLATLS---ALTQ------PSPEALAAEIARCREL-------TDRPFGVNLTLLPTQKPVPYAEYRA 90 (328)
T ss_dssp HHHHHHHHHTT--SBCEEE---TTTS------SSHHHHHHHHHHHHHH-------CSSCCEEEEEECCCSSCCCHHHHHH
T ss_pred HHHHHHHHHCC--CeEEeC---CCCC------CCHHHHHHHHHHHHHh-------cCCCeEEEEeccccccCccHHHHHH
Confidence 45677777766 333321 1111 1234455666666655 4556655443320 0123567778
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .++|+|+|+++... | .+.++.+++. + ++++. .+.+.+++.++...
T Consensus 91 ~~--~~~g~d~V~~~~g~------------------------p--~~~~~~l~~~-g--i~vi~--~v~t~~~a~~~~~~ 137 (328)
T 2gjl_A 91 AI--IEAGIRVVETAGND------------------------P--GEHIAEFRRH-G--VKVIH--KCTAVRHALKAERL 137 (328)
T ss_dssp HH--HHTTCCEEEEEESC------------------------C--HHHHHHHHHT-T--CEEEE--EESSHHHHHHHHHT
T ss_pred HH--HhcCCCEEEEcCCC------------------------c--HHHHHHHHHc-C--CCEEe--eCCCHHHHHHHHHc
Confidence 88 88999999876421 1 2456666664 3 88885 48999999999999
Q ss_pred ccCeeee
Q psy5880 281 GASLVQI 287 (328)
Q Consensus 281 GAd~V~v 287 (328)
|+|+|.+
T Consensus 138 GaD~i~v 144 (328)
T 2gjl_A 138 GVDAVSI 144 (328)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999988
No 395
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=94.03 E-value=0.87 Score=40.93 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ +|+|-++-+ . |....-..+.-.++++.+.+... .++||++=++... .++..++
T Consensus 22 ~~~l~~lv~~li~~G--v~gl~v~Gt--t--GE~~~Lt~~Er~~v~~~~~~~~~-----grvpviaGvg~~~-t~~ai~l 89 (292)
T 3daq_A 22 LEALKAHVNFLLENN--AQAIIVNGT--T--AESPTLTTDEKELILKTVIDLVD-----KRVPVIAGTGTND-TEKSIQA 89 (292)
T ss_dssp HHHHHHHHHHHHHTT--CCEEEESSG--G--GTGGGSCHHHHHHHHHHHHHHHT-----TSSCEEEECCCSC-HHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc--c--cccccCCHHHHHHHHHHHHHHhC-----CCCcEEEeCCccc-HHHHHHH
Confidence 345556665555444 999987544 1 32221123334556666555532 4789999876654 4568899
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 90 a~~a--~~~Gadavlv~~P~y 108 (292)
T 3daq_A 90 SIQA--KALGADAIMLITPYY 108 (292)
T ss_dssp HHHH--HHHTCSEEEEECCCS
T ss_pred HHHH--HHcCCCEEEECCCCC
Confidence 9999 899999998876543
No 396
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=94.01 E-value=0.78 Score=42.09 Aligned_cols=87 Identities=8% Similarity=0.080 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|+|.++-+ . |....-..+.-.++++.+.+... .++||++=++...+ ++..++
T Consensus 54 ~~~l~~lv~~li~~G--v~Gl~v~Gt--T--GE~~~Ls~eEr~~vi~~~ve~~~-----grvpViaGvg~~st-~eai~l 121 (332)
T 2r8w_A 54 IEAFSALIARLDAAE--VDSVGILGS--T--GIYMYLTREERRRAIEAAATILR-----GRRTLMAGIGALRT-DEAVAL 121 (332)
T ss_dssp HHHHHHHHHHHHHHT--CSEEEESST--T--TTGGGSCHHHHHHHHHHHHHHHT-----TSSEEEEEECCSSH-HHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc--c--cChhhCCHHHHHHHHHHHHHHhC-----CCCcEEEecCCCCH-HHHHHH
Confidence 345566666555555 999987544 2 32222233445566666665532 46899998877544 467889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 122 a~~A--~~~Gadavlv~~P~Y 140 (332)
T 2r8w_A 122 AKDA--EAAGADALLLAPVSY 140 (332)
T ss_dssp HHHH--HHHTCSEEEECCCCS
T ss_pred HHHH--HhcCCCEEEECCCCC
Confidence 9999 899999998876544
No 397
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=94.01 E-value=0.94 Score=40.73 Aligned_cols=86 Identities=7% Similarity=0.043 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+....+++-.... +.|++.++-+ . |....-..+.-.++++.+.+... .++||++=++...+ ++..+++
T Consensus 21 ~~l~~lv~~li~~--Gv~gl~~~Gt--t--GE~~~Ls~~Er~~v~~~~~~~~~-----grvpviaGvg~~~t-~~ai~la 88 (294)
T 2ehh_A 21 EALGNLIEFHVDN--GTDAILVCGT--T--GESPTLTFEEHEKVIEFAVKRAA-----GRIKVIAGTGGNAT-HEAVHLT 88 (294)
T ss_dssp HHHHHHHHHHHTT--TCCEEEESST--T--TTGGGSCHHHHHHHHHHHHHHHT-----TSSEEEEECCCSCH-HHHHHHH
T ss_pred HHHHHHHHHHHHC--CCCEEEECcc--c--cChhhCCHHHHHHHHHHHHHHhC-----CCCcEEEecCCCCH-HHHHHHH
Confidence 4455555554444 4999987544 2 32221223344566666665532 46899998877544 4678899
Q ss_pred HHhccccCCccEEEEecCCc
Q psy5880 200 DVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~ 219 (328)
+.+ +++|+|++.+....+
T Consensus 89 ~~A--~~~Gadavlv~~P~y 106 (294)
T 2ehh_A 89 AHA--KEVGADGALVVVPYY 106 (294)
T ss_dssp HHH--HHTTCSEEEEECCCS
T ss_pred HHH--HhcCCCEEEECCCCC
Confidence 999 999999998876554
No 398
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=93.96 E-value=0.23 Score=44.42 Aligned_cols=120 Identities=13% Similarity=-0.006 Sum_probs=71.5
Q ss_pred CCCEEEEeCCC-CChhhHHHHHHHhccccCCccEEEEecCCccchhhhcccc-----ccccCCCCCCcCchHHHHHHHHH
Q psy5880 179 LPPILVKIAPD-LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY-----KEETGGLSGEPLRNKSTELISEM 252 (328)
Q Consensus 179 ~~Pv~vKl~~~-~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~-----~~~~gg~sg~~~~~~~l~~v~~i 252 (328)
+..++.=+..+ .+.+...++++.+ .++|+|.|-+.-.+.. |..+.|.. .....|. .....++.++++
T Consensus 19 ~~ali~yi~aGdP~~~~~~~~~~~l--~~~GaD~iElGiPfSD-P~aDGpvIq~a~~rAL~~G~----~~~~~~~~v~~~ 91 (271)
T 3nav_A 19 QGAFVPFVTIGDPNPEQSLAIMQTL--IDAGADALELGMPFSD-PLADGPTIQGANLRALAAKT----TPDICFELIAQI 91 (271)
T ss_dssp BCEEEEEEETTSSCHHHHHHHHHHH--HHTTCSSEEEECCCCC-GGGCCSHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHcCCCEEEECCCCCC-CCCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHH
Confidence 44566666655 4556788999999 9999999988765533 21111111 0111221 112447889999
Q ss_pred HHH-cCCCccEEEecCCCC-------HHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHHHHHHHHhCCC
Q psy5880 253 YKL-TKGKLPIIGVGGVFS-------GKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYN 316 (328)
Q Consensus 253 ~~~-~~~~ipvia~GGI~s-------~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~~~m~~~g~~ 316 (328)
|+. .. +|++.-| ..+ .+-+.++.++|+|.|.+...-+- -..++...+.++|..
T Consensus 92 r~~~~~--~Pivlm~-Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~e--------e~~~~~~~~~~~gl~ 152 (271)
T 3nav_A 92 RARNPE--TPIGLLM-YANLVYARGIDDFYQRCQKAGVDSVLIADVPTN--------ESQPFVAAAEKFGIQ 152 (271)
T ss_dssp HHHCTT--SCEEEEE-CHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGG--------GCHHHHHHHHHTTCE
T ss_pred HhcCCC--CCEEEEe-cCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHH--------HHHHHHHHHHHcCCe
Confidence 987 55 9998875 222 23366677899999988543221 123345555666653
No 399
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=93.96 E-value=0.95 Score=41.20 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|+|.++-+ . |....-..+.-.++++.+.+... .++||++=++... .++..++
T Consensus 42 ~~~l~~li~~li~~G--v~Gl~v~Gt--T--GE~~~Ls~~Er~~v~~~~v~~~~-----grvpViaGvg~~s-t~~ai~l 109 (315)
T 3si9_A 42 EKAFCNFVEWQITQG--INGVSPVGT--T--GESPTLTHEEHKRIIELCVEQVA-----KRVPVVAGAGSNS-TSEAVEL 109 (315)
T ss_dssp HHHHHHHHHHHHHTT--CSEEECSST--T--TTGGGSCHHHHHHHHHHHHHHHT-----TSSCBEEECCCSS-HHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEeCcc--c--cCccccCHHHHHHHHHHHHHHhC-----CCCcEEEeCCCCC-HHHHHHH
Confidence 345555555555444 999976444 1 32221223344556666655532 4789999776653 4568889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 110 a~~A--~~~Gadavlv~~P~y 128 (315)
T 3si9_A 110 AKHA--EKAGADAVLVVTPYY 128 (315)
T ss_dssp HHHH--HHTTCSEEEEECCCS
T ss_pred HHHH--HhcCCCEEEECCCCC
Confidence 9999 999999998876554
No 400
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=93.94 E-value=0.35 Score=44.71 Aligned_cols=156 Identities=12% Similarity=0.038 Sum_probs=80.6
Q ss_pred ChhhHHHHHHHhHHHHHHHhhcC-ccceEEec---------cCCCCCcCccCC------Cch-HHHHHHHHHHHHHhhhh
Q psy5880 32 SSFARMRAWVLQFWLLGILKFGD-VAHYFVVN---------VSSPNTANLRKL------QAK-DQLKHLLKTVVETRNQL 94 (328)
Q Consensus 32 ~~~~~v~~~~l~~y~~~~~~l~~-~~~~v~~n---------~sspN~~gl~~~------~~~-~~L~~ll~~v~~~~~~~ 94 (328)
...+.+. .++++|.+.++.+.. -.|.|++| -.||++-. +.+ .+. .-+.+++++|++.-
T Consensus 133 mt~~eI~-~ii~~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~-R~D~yGGslenR~rf~~eiv~aVr~av--- 207 (343)
T 3kru_A 133 LSVEEIK-SIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNK-RKDEYGNSIENRARFLIEVIDEVRKNW--- 207 (343)
T ss_dssp CCHHHHH-HHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCC-CCSTTSSSHHHHTHHHHHHHHHHHHTS---
T ss_pred cCHHHHH-HHHHHHHHHHhhccccCCceEEEecccchhHHHhhcccccc-cchhhccchHhHHHHHHHHHHHHHhcC---
Confidence 3345564 567889998886533 25889999 46886521 222 111 22345555555442
Q ss_pred cCCCCCcchhcccCC-cccccccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHh
Q psy5880 95 ALKPLPPILVKIAPD-LSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQ 173 (328)
Q Consensus 95 ~~~~~~Pv~vki~~~-l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~ 173 (328)
+ ...|+.+|+.++ ..-+ ....+++.+.++.+.+.+|+|++... .+........+....++++.|++.
T Consensus 208 g--~d~pv~vRls~~~~~~~-----g~~~~~~~~~a~~l~~~vd~i~vs~g--~~~~~~~~~~~~~~~~~~~~ir~~--- 275 (343)
T 3kru_A 208 P--ENKPIFVRVSADDYMEG-----GINIDMMVEYINMIKDKVDLIDVSSG--GLLNVDINLYPGYQVKYAETIKKR--- 275 (343)
T ss_dssp C--TTSCEEEEEECCCSSTT-----SCCHHHHHHHHHHHTTTCSEEEEECC--CSSCCCCCCCTTTTHHHHHHHHHH---
T ss_pred C--ccCCeEEEeechhhhcc-----CccHHHHHHHHHHhhccccEEeccCC--ceEeeeecccCceeehHHHHHHHh---
Confidence 2 245899999873 2111 11245555555555544889887321 110000001122234566677766
Q ss_pred hcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCC-ccEEEEe
Q psy5880 174 LAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCK-VDGLIVS 215 (328)
Q Consensus 174 ~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G-~d~i~~~ 215 (328)
.++||++= .++.. .....+.+ +.| +|+|.+.
T Consensus 276 ----~~iPVi~~--Ggi~t--~e~Ae~~l---~~G~aD~V~iG 307 (343)
T 3kru_A 276 ----CNIKTSAV--GLITT--QELAEEIL---SNERADLVALG 307 (343)
T ss_dssp ----HTCEEEEE--SSCCC--HHHHHHHH---HTTSCSEEEES
T ss_pred ----cCccccee--eeeeH--HHHHHHHH---hchhhHHHHHH
Confidence 46898763 23321 22333434 455 9988554
No 401
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=93.93 E-value=0.21 Score=43.51 Aligned_cols=100 Identities=8% Similarity=0.040 Sum_probs=61.7
Q ss_pred CEEEEeCCC-CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccc-----cccccCCCCCCcCchHHHHHHHHHHH
Q psy5880 181 PILVKIAPD-LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDAR-----YKEETGGLSGEPLRNKSTELISEMYK 254 (328)
Q Consensus 181 Pv~vKl~~~-~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~-----~~~~~gg~sg~~~~~~~l~~v~~i~~ 254 (328)
+++.=+... .+.+++.+.++.+ .++ +|.|++.-.+.. |..+.+. ......|. .....++.++++++
T Consensus 6 ~~~~~i~~~~~~~~~~~~~a~~~--~~~-ad~iel~~p~sd-p~~DG~~~~~~~~~al~~g~----~~~~~~~~i~~i~~ 77 (248)
T 1geq_A 6 SLIPYLTAGDPDKQSTLNFLLAL--DEY-AGAIELGIPFSD-PIADGKTIQESHYRALKNGF----KLREAFWIVKEFRR 77 (248)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHH--GGG-BSCEEEECCCSC-CTTSCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHc-CCEEEECCCCCC-CCCCCHHHHHHHHHHHHCCC----CHHHHHHHHHHHHh
Confidence 445444333 3336788899999 888 999987622211 1000000 00000111 12345788999998
Q ss_pred HcCCCccEEEecCCCC------HHHHHHHHHhccCeeeehhH
Q psy5880 255 LTKGKLPIIGVGGVFS------GKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 255 ~~~~~ipvia~GGI~s------~~da~~~l~~GAd~V~vg~a 290 (328)
.++ +||...++++. .+.+..++++|||.|.++..
T Consensus 78 ~~~--~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~ 117 (248)
T 1geq_A 78 HSS--TPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDL 117 (248)
T ss_dssp TCC--CCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTC
T ss_pred hCC--CCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCC
Confidence 876 89887766554 57888899999999999854
No 402
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=93.92 E-value=0.7 Score=41.83 Aligned_cols=87 Identities=13% Similarity=0.123 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|+|-++-+ . |....-..+.-.++++.+.+... .++||++=++... .++..++
T Consensus 35 ~~~l~~lv~~li~~G--v~gi~v~Gt--t--GE~~~Lt~~Er~~v~~~~~~~~~-----grvpviaGvg~~~-t~~ai~l 102 (304)
T 3l21_A 35 TATAARLANHLVDQG--CDGLVVSGT--T--GESPTTTDGEKIELLRAVLEAVG-----DRARVIAGAGTYD-TAHSIRL 102 (304)
T ss_dssp HHHHHHHHHHHHHTT--CSEEEESST--T--TTGGGSCHHHHHHHHHHHHHHHT-----TTSEEEEECCCSC-HHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEeCcc--c--cchhhCCHHHHHHHHHHHHHHhC-----CCCeEEEeCCCCC-HHHHHHH
Confidence 345566665555544 999987544 2 32221123344556666665532 4789999876654 4578899
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 103 a~~a--~~~Gadavlv~~P~y 121 (304)
T 3l21_A 103 AKAC--AAEGAHGLLVVTPYY 121 (304)
T ss_dssp HHHH--HHHTCSEEEEECCCS
T ss_pred HHHH--HHcCCCEEEECCCCC
Confidence 9999 999999998876554
No 403
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=93.91 E-value=1.8 Score=39.98 Aligned_cols=115 Identities=12% Similarity=0.081 Sum_probs=76.4
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.++||++|-... +.+++...++.+ .+.|.+.+.++.+. ++| - +....+|..+..+++.++
T Consensus 134 ~gKPviLstGms-tl~Ei~~Ave~i--~~~g~~viLlhC~s-~YP---------------t-~~~~~nL~aI~~Lk~~fp 193 (350)
T 3g8r_A 134 SDKPVVASTAGA-RREDIDKVVSFM--LHRGKDLTIMHCVA-EYP---------------T-PDDHLHLARIKTLRQQYA 193 (350)
T ss_dssp SCSCEEEECTTC-CHHHHHHHHHHH--HTTTCCEEEEECCC-CSS---------------C-CGGGCCTTHHHHHHHHCT
T ss_pred hCCcEEEECCCC-CHHHHHHHHHHH--HHcCCCEEEEecCC-CCC---------------C-CcccCCHHHHHHHHHHCC
Confidence 589999998885 888899999988 78888755555432 222 1 112345788889999883
Q ss_pred CCccEEEe----cCCCCHHHHHHHHHhccCeeeehhHHh---------hcCchHHHHHHHHHHHHHHHhCC
Q psy5880 258 GKLPIIGV----GGVFSGKDAFEKIKAGASLVQIYTSFV---------YHGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 258 ~~ipvia~----GGI~s~~da~~~l~~GAd~V~vg~a~l---------~~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
++||..+ |+.. .-+..++.+||+.|...--+= .-.|+-++++.+.++..-...|-
T Consensus 194 -~lpVG~SdHt~g~~~--~~~~AAvAlGA~vIEkH~tldr~~g~D~~~Sl~P~ef~~lv~~ir~i~~alG~ 261 (350)
T 3g8r_A 194 -GVRIGYSTHEDPDLM--EPIMLAVAQGATVFEKHVGLPTDQYGINNYSANPEQVRRWLAAAARALAMLGD 261 (350)
T ss_dssp -TSEEEEEECCCSSCC--HHHHHHHHTTCCEEEEEBCCCBTTBCCCTTCBCHHHHHHHHHHHHHHHHHHCC
T ss_pred -CCCEEcCCCCCCCcc--HHHHHHHHcCCCEEEEecCcccCCCCcccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 3898766 3331 334578899999887652110 01366788888877766555554
No 404
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=93.90 E-value=0.98 Score=40.78 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCC-CCCEEEEeCCCCChhhHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKP-LPPILVKIAPDLSLDEKKD 197 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~-~~Pv~vKl~~~~~~~~~~~ 197 (328)
.+....+++-....+ .|++-++-+ . |....-..+.-.++++.+.+... . ++||++=++.. +.++..+
T Consensus 27 ~~~l~~lv~~li~~G--v~gl~v~Gt--t--GE~~~Ls~~Er~~v~~~~~~~~~-----g~rvpviaGvg~~-~t~~ai~ 94 (301)
T 3m5v_A 27 EQSYARLIKRQIENG--IDAVVPVGT--T--GESATLTHEEHRTCIEIAVETCK-----GTKVKVLAGAGSN-ATHEAVG 94 (301)
T ss_dssp HHHHHHHHHHHHHTT--CCEEECSST--T--TTGGGSCHHHHHHHHHHHHHHHT-----TSSCEEEEECCCS-SHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc--c--cChhhCCHHHHHHHHHHHHHHhC-----CCCCeEEEeCCCC-CHHHHHH
Confidence 355666665555544 999976544 1 32221223344566666665532 4 68999977654 3456889
Q ss_pred HHHHhccccCCccEEEEecCCc
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~ 219 (328)
+++.+ +++|+|++.+....+
T Consensus 95 la~~a--~~~Gadavlv~~P~y 114 (301)
T 3m5v_A 95 LAKFA--KEHGADGILSVAPYY 114 (301)
T ss_dssp HHHHH--HHTTCSEEEEECCCS
T ss_pred HHHHH--HHcCCCEEEEcCCCC
Confidence 99999 999999998876544
No 405
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=93.87 E-value=0.26 Score=45.16 Aligned_cols=111 Identities=20% Similarity=0.114 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.+++.++.+++ .-++. .+.+. .++.+.+.++.+++. .+.|+.|.+-... ++..+.++.+
T Consensus 40 ~~la~av~~aG--glG~i---~~~~~-------~~~~l~~~i~~i~~~-------~~~p~gVnl~~~~--~~~~~~~~~~ 98 (326)
T 3bo9_A 40 PTLAAAVSEAG--GLGII---GSGAM-------KPDDLRKAISELRQK-------TDKPFGVNIILVS--PWADDLVKVC 98 (326)
T ss_dssp HHHHHHHHHTT--SBEEE---ECTTC-------CHHHHHHHHHHHHTT-------CSSCEEEEEETTS--TTHHHHHHHH
T ss_pred HHHHHHHHhCC--CcEEe---CCCCC-------CHHHHHHHHHHHHHh-------cCCCEEEEEeccC--CCHHHHHHHH
Confidence 45677777766 33332 11111 244455666666543 4679988875421 2356677888
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhcc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGA 282 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GA 282 (328)
.++|+|+|+++... | .+.++.+++. + ++|+. ++.+.+++.++.+.||
T Consensus 99 --~~~g~d~V~l~~g~------------------------p--~~~~~~l~~~-g--~~v~~--~v~s~~~a~~a~~~Ga 145 (326)
T 3bo9_A 99 --IEEKVPVVTFGAGN------------------------P--TKYIRELKEN-G--TKVIP--VVASDSLARMVERAGA 145 (326)
T ss_dssp --HHTTCSEEEEESSC------------------------C--HHHHHHHHHT-T--CEEEE--EESSHHHHHHHHHTTC
T ss_pred --HHCCCCEEEECCCC------------------------c--HHHHHHHHHc-C--CcEEE--EcCCHHHHHHHHHcCC
Confidence 88999999875421 1 1345566653 3 77775 6899999999999999
Q ss_pred Ceeee
Q psy5880 283 SLVQI 287 (328)
Q Consensus 283 d~V~v 287 (328)
|+|.+
T Consensus 146 D~i~v 150 (326)
T 3bo9_A 146 DAVIA 150 (326)
T ss_dssp SCEEE
T ss_pred CEEEE
Confidence 99988
No 406
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=93.85 E-value=0.84 Score=41.33 Aligned_cols=87 Identities=14% Similarity=0.184 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|++.++-+ . |....-..+.-.++++.+.+... .++||++=++...+ ++..++
T Consensus 32 ~~~l~~lv~~li~~G--v~gl~v~Gt--T--GE~~~Ls~eEr~~vi~~~~~~~~-----grvpViaGvg~~st-~~ai~l 99 (306)
T 1o5k_A 32 LESYERLVRYQLENG--VNALIVLGT--T--GESPTVNEDEREKLVSRTLEIVD-----GKIPVIVGAGTNST-EKTLKL 99 (306)
T ss_dssp HHHHHHHHHHHHHTT--CCEEEESSG--G--GTGGGCCHHHHHHHHHHHHHHHT-----TSSCEEEECCCSCH-HHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEeCcc--c--cchhhCCHHHHHHHHHHHHHHhC-----CCCeEEEcCCCccH-HHHHHH
Confidence 345566665555544 999986544 1 32222233444566666665532 46899998877544 467888
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 100 a~~A--~~~Gadavlv~~P~y 118 (306)
T 1o5k_A 100 VKQA--EKLGANGVLVVTPYY 118 (306)
T ss_dssp HHHH--HHHTCSEEEEECCCS
T ss_pred HHHH--HhcCCCEEEECCCCC
Confidence 9999 899999998876554
No 407
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=93.85 E-value=1 Score=40.64 Aligned_cols=132 Identities=12% Similarity=0.162 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC-ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDL-SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG 238 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~-~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg 238 (328)
+.+++..++..++. .++||++.+..++ +.++..+.++.+ .++|+.+|.+=..... +.-...|| .+
T Consensus 64 ~~em~~~~~~I~~~----~~~PviaD~d~Gyg~~~~v~~~v~~l--~~aGaagv~iED~~~~-------k~cgH~gg-~~ 129 (295)
T 1s2w_A 64 WTQVVEVLEFMSDA----SDVPILLDADTGYGNFNNARRLVRKL--EDRGVAGACLEDKLFP-------KTNSLHDG-RA 129 (295)
T ss_dssp CHHHHHHHHHHHHT----CSSCEEEECCSSCSSHHHHHHHHHHH--HHTTCCEEEEECBCC---------------C-TT
T ss_pred HHHHHHHHHHHHhc----CCCCEEecCCCCCCCHHHHHHHHHHH--HHcCCcEEEECCCCCC-------ccccccCC-CC
Confidence 44455555554432 6899999998764 334567778888 8999999988654321 00001121 12
Q ss_pred CcCchHH--HHHHHHHHHHc-CCCccEEEecCCC----CHHH----HHHHHHhccCeeeehhHHhhcCchHHHHHHHHHH
Q psy5880 239 EPLRNKS--TELISEMYKLT-KGKLPIIGVGGVF----SGKD----AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELE 307 (328)
Q Consensus 239 ~~~~~~~--l~~v~~i~~~~-~~~ipvia~GGI~----s~~d----a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l~ 307 (328)
..+.|.. .+.|+.++++- .+++-|++=..-. ..++ +..+.++|||+|.+=..+ .+++.++++.+.+.
T Consensus 130 k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~--~~~~~~~~i~~~~~ 207 (295)
T 1s2w_A 130 QPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKK--ADPSDIEAFMKAWN 207 (295)
T ss_dssp CCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCS--SSSHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHHHHHHHHHHHHHcCCCEEEEcCCC--CCHHHHHHHHHHcC
Confidence 4455544 45555555543 2345566543322 1233 445667999999884332 23567777777654
No 408
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=93.83 E-value=0.41 Score=43.86 Aligned_cols=111 Identities=20% Similarity=0.076 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHh
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVV 202 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l 202 (328)
.+++.++.+++ +.+.+. +++. +++.+.+.++.+++. .+.|+.|-+-... +++.+.++.+
T Consensus 26 ~~la~av~~aG-~lG~i~----~~~~-------~~~~~~~~i~~i~~~-------~~~p~gvnl~~~~--~~~~~~~~~a 84 (332)
T 2z6i_A 26 GDLAGAVSKAG-GLGIIG----GGNA-------PKEVVKANIDKIKSL-------TDKPFGVNIMLLS--PFVEDIVDLV 84 (332)
T ss_dssp HHHHHHHHHHT-SBEEEE----CTTC-------CHHHHHHHHHHHHHH-------CCSCEEEEECTTS--TTHHHHHHHH
T ss_pred HHHHHHHHhCC-CcEEeC----CCCC-------CHHHHHHHHHHHHHh-------cCCCEEEEecCCC--CCHHHHHHHH
Confidence 45666677766 123443 2221 234455666666654 5679988876521 1356778888
Q ss_pred ccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhcc
Q psy5880 203 LDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGA 282 (328)
Q Consensus 203 ~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GA 282 (328)
.++|+|+|.++.... .+.++.+++. + +||+. .+.+.+++..+.+.|+
T Consensus 85 --~~~g~d~V~~~~g~p--------------------------~~~i~~l~~~-g--~~v~~--~v~~~~~a~~~~~~Ga 131 (332)
T 2z6i_A 85 --IEEGVKVVTTGAGNP--------------------------SKYMERFHEA-G--IIVIP--VVPSVALAKRMEKIGA 131 (332)
T ss_dssp --HHTTCSEEEECSSCG--------------------------GGTHHHHHHT-T--CEEEE--EESSHHHHHHHHHTTC
T ss_pred --HHCCCCEEEECCCCh--------------------------HHHHHHHHHc-C--CeEEE--EeCCHHHHHHHHHcCC
Confidence 899999998765211 1345566653 3 88885 3789999999999999
Q ss_pred Ceeee
Q psy5880 283 SLVQI 287 (328)
Q Consensus 283 d~V~v 287 (328)
|+|.+
T Consensus 132 D~i~v 136 (332)
T 2z6i_A 132 DAVIA 136 (332)
T ss_dssp SCEEE
T ss_pred CEEEE
Confidence 99988
No 409
>2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A
Probab=93.83 E-value=0.87 Score=41.64 Aligned_cols=113 Identities=13% Similarity=0.150 Sum_probs=77.5
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccC---CccE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKC---KVDG 211 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~---G~d~ 211 (328)
++..+-+.++.. +.+.-.+.+++||+. ++ .++.|.+.....++.++..++++.+ .+. ++.+
T Consensus 131 G~~~~KiKvg~~---------~~~~d~~~v~avr~~---~g--~~~~L~vDaN~~~~~~~A~~~~~~l--~~~~~~~i~~ 194 (332)
T 2ozt_A 131 GQTTFKWKVGVM---------SPEEEQAILKALLAA---LP--PGAKLRLDANGSWDRATANRWFAWL--DRHGNGKIEY 194 (332)
T ss_dssp TCCEEEEECSSS---------CHHHHHHHHHHHHHH---SC--TTCEEEEECTTCCCHHHHHHHHHHH--HHHCCTTEEE
T ss_pred CCcEEEEEeCCC---------ChHHHHHHHHHHHHH---cC--CCCEEEEcccCCCCHHHHHHHHHHH--HhhccCCcce
Confidence 577887766520 122334566777765 33 4678888888888888888888888 666 5444
Q ss_pred EEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhH
Q psy5880 212 LIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTS 290 (328)
Q Consensus 212 i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a 290 (328)
| - . |+.+..++..+++++.++ +||.+-=.+.+..++.++++.| ++.+++=-.
T Consensus 195 i---E----q------------------P~~~~d~~~~~~l~~~~~--ipIa~dEs~~~~~~~~~~~~~~a~~~i~ik~~ 247 (332)
T 2ozt_A 195 V---E----Q------------------PLPPDQWQALLSLAQTVT--TAIALDESVVSAAEVQRWVDRGWPGFFVIKTA 247 (332)
T ss_dssp E---E----C------------------CSCTTCHHHHHHHHHHCS--SCEEESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred e---E----C------------------CCCCCCHHHHHHHHHhCC--CCEEeCCCCCCHHHHHHHHHhCCCCEEEEChh
Confidence 4 1 1 111223566677888876 9999988999999999999998 576676433
No 410
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=93.82 E-value=0.13 Score=47.72 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 245 STELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 245 ~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
.++.++.+++.++ ++||+ .|++.|++++.++.++|||+|.++
T Consensus 148 ~~~~i~~lr~~~~-~~~vi-~g~v~t~e~A~~a~~aGaD~I~v~ 189 (351)
T 2c6q_A 148 FVEFVKDVRKRFP-QHTIM-AGNVVTGEMVEELILSGADIIKVG 189 (351)
T ss_dssp HHHHHHHHHHHCT-TSEEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHhcC-CCeEE-EEeCCCHHHHHHHHHhCCCEEEEC
Confidence 4678899999883 38888 478899999999999999999774
No 411
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=93.78 E-value=0.81 Score=38.46 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEE--EeCCCCChhhHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILV--KIAPDLSLDEKKDIA 199 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~v--Kl~~~~~~~~~~~~a 199 (328)
.++..+.++.+..++|.++++.. .. . ..-.++++.+++.. .+.|+++ |+. +. ...++
T Consensus 12 ~~~~~~~~~~~~~~v~~iev~~~--~~-----~---~~g~~~i~~l~~~~------~~~~i~~~l~~~-di----~~~~~ 70 (207)
T 3ajx_A 12 TEAALELAGKVAEYVDIIELGTP--LI-----K---AEGLSVITAVKKAH------PDKIVFADMKTM-DA----GELEA 70 (207)
T ss_dssp HHHHHHHHHHHGGGCSEEEECHH--HH-----H---HHCTHHHHHHHHHS------TTSEEEEEEEEC-SC----HHHHH
T ss_pred HHHHHHHHHHhhccCCEEEECcH--HH-----H---hhCHHHHHHHHHhC------CCCeEEEEEEec-Cc----cHHHH
Confidence 45555556666556799997443 10 0 11123556666541 2678886 753 21 23456
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHH-HHHHHHHHHcCCCccE-EEecCCCCHHH-HHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKST-ELISEMYKLTKGKLPI-IGVGGVFSGKD-AFE 276 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l-~~v~~i~~~~~~~ipv-ia~GGI~s~~d-a~~ 276 (328)
+.+ .++|+|++++|..... ..+ +.++.+++. + +++ +..-..+|+++ +.+
T Consensus 71 ~~a--~~~Gad~v~vh~~~~~-----------------------~~~~~~~~~~~~~-g--~~~gv~~~s~~~p~~~~~~ 122 (207)
T 3ajx_A 71 DIA--FKAGADLVTVLGSADD-----------------------STIAGAVKAAQAH-N--KGVVVDLIGIEDKATRAQE 122 (207)
T ss_dssp HHH--HHTTCSEEEEETTSCH-----------------------HHHHHHHHHHHHH-T--CEEEEECTTCSSHHHHHHH
T ss_pred HHH--HhCCCCEEEEeccCCh-----------------------HHHHHHHHHHHHc-C--CceEEEEecCCChHHHHHH
Confidence 778 8999999998853210 111 223333332 3 454 22234447777 445
Q ss_pred HHHhccCeeeeh
Q psy5880 277 KIKAGASLVQIY 288 (328)
Q Consensus 277 ~l~~GAd~V~vg 288 (328)
+...|+|.|.+.
T Consensus 123 ~~~~g~d~v~~~ 134 (207)
T 3ajx_A 123 VRALGAKFVEMH 134 (207)
T ss_dssp HHHTTCSEEEEE
T ss_pred HHHhCCCEEEEE
Confidence 556799999554
No 412
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=93.78 E-value=0.82 Score=42.15 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ +|+|.++-+ . |....-..+.-.++++.+.+... .++||++=++...+ ++..++
T Consensus 51 ~~~l~~lv~~li~~G--v~Gl~v~Gt--T--GE~~~Ls~eEr~~vi~~~ve~~~-----grvpViaGvg~~st-~eai~l 118 (343)
T 2v9d_A 51 KPGTAALIDDLIKAG--VDGLFFLGS--G--GEFSQLGAEERKAIARFAIDHVD-----RRVPVLIGTGGTNA-RETIEL 118 (343)
T ss_dssp HHHHHHHHHHHHHTT--CSCEEESST--T--TTGGGSCHHHHHHHHHHHHHHHT-----TSSCEEEECCSSCH-HHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEeCcc--c--cChhhCCHHHHHHHHHHHHHHhC-----CCCcEEEecCCCCH-HHHHHH
Confidence 345556665555544 899987544 2 32222223444566666665532 47899998876544 467889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 119 a~~A--~~~Gadavlv~~P~Y 137 (343)
T 2v9d_A 119 SQHA--QQAGADGIVVINPYY 137 (343)
T ss_dssp HHHH--HHHTCSEEEEECCSS
T ss_pred HHHH--HhcCCCEEEECCCCC
Confidence 9999 999999998876554
No 413
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=93.77 E-value=0.83 Score=41.18 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|++.++-+ | |....-..+.-.++++.+.+... .++||++=++...+ ++..++
T Consensus 20 ~~~l~~lv~~li~~G--v~gi~v~Gt---t-GE~~~Ls~~Er~~v~~~~~~~~~-----grvpviaGvg~~~t-~~ai~l 87 (297)
T 2rfg_A 20 EKALAGLVDWQIKHG--AHGLVPVGT---T-GESPTLTEEEHKRVVALVAEQAQ-----GRVPVIAGAGSNNP-VEAVRY 87 (297)
T ss_dssp HHHHHHHHHHHHHTT--CSEEECSSG---G-GTGGGSCHHHHHHHHHHHHHHHT-----TSSCBEEECCCSSH-HHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc---c-cchhhCCHHHHHHHHHHHHHHhC-----CCCeEEEccCCCCH-HHHHHH
Confidence 345566665555544 999976443 1 32222233444566666665532 46899998877544 467889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 88 a~~A--~~~Gadavlv~~P~y 106 (297)
T 2rfg_A 88 AQHA--QQAGADAVLCVAGYY 106 (297)
T ss_dssp HHHH--HHHTCSEEEECCCTT
T ss_pred HHHH--HhcCCCEEEEcCCCC
Confidence 9999 899999998876544
No 414
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=93.76 E-value=0.4 Score=42.57 Aligned_cols=94 Identities=13% Similarity=0.053 Sum_probs=57.7
Q ss_pred CCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhcccc-----ccccCCCCCCcCchHHHHHHHHHHHH-cCCCc
Q psy5880 187 APDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY-----KEETGGLSGEPLRNKSTELISEMYKL-TKGKL 260 (328)
Q Consensus 187 ~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~-----~~~~gg~sg~~~~~~~l~~v~~i~~~-~~~~i 260 (328)
..+.+.++..++++.+ .++|+|+|.+...+.. |..+.|.. ....+|. .....++.++++++. ++ +
T Consensus 25 ~gdp~~~~~~~~~~~l--~~~GaD~ieig~P~sd-p~~DG~~i~~a~~~al~~G~----~~~~~~~~v~~ir~~~~~--~ 95 (268)
T 1qop_A 25 LGDPGIEQSLKIIDTL--IDAGADALELGVPFSD-PLADGPTIQNANLRAFAAGV----TPAQCFEMLAIIREKHPT--I 95 (268)
T ss_dssp TTSSCHHHHHHHHHHH--HHTTCSSEEEECCCSC-CTTCCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHCSS--S
T ss_pred CCCCCHHHHHHHHHHH--HHCCCCEEEECCCCCC-ccCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHhcCCC--C
Confidence 4445567788999999 9999999998654322 10000000 0001111 012346789999988 66 9
Q ss_pred cEEEecCCCC-------HHHHHHHHHhccCeeeehhH
Q psy5880 261 PIIGVGGVFS-------GKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 261 pvia~GGI~s-------~~da~~~l~~GAd~V~vg~a 290 (328)
||+..+- .+ .+.+.++.++|||.|.+.-.
T Consensus 96 Pv~lm~y-~n~v~~~g~~~~~~~~~~aGadgii~~d~ 131 (268)
T 1qop_A 96 PIGLLMY-ANLVFNNGIDAFYARCEQVGVDSVLVADV 131 (268)
T ss_dssp CEEEEEC-HHHHHTTCHHHHHHHHHHHTCCEEEETTC
T ss_pred CEEEEEc-ccHHHHhhHHHHHHHHHHcCCCEEEEcCC
Confidence 9887531 22 36677788899998887643
No 415
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=93.73 E-value=0.15 Score=44.24 Aligned_cols=115 Identities=14% Similarity=0.146 Sum_probs=63.5
Q ss_pred ccceEE--eccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcc---cCCcccccccchhHHHHHHHHHH
Q psy5880 55 VAHYFV--VNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKI---APDLSLDEKKDIADVVLDSVKGI 129 (328)
Q Consensus 55 ~~~~v~--~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki---~~~l~~~~n~~~~~~i~~~~~~a 129 (328)
.+|.++ +|++| +++.+. +.+.+.+..+++.. .|+++|+ .+++ +.+.+.++++.+
T Consensus 83 Gad~Id~viN~g~-----~~~~~~-~~~~~~i~~v~~a~--------~pv~vKvi~e~~~l-------~~~~~~~~a~~a 141 (225)
T 1mzh_A 83 GAQELDIVWNLSA-----FKSEKY-DFVVEELKEIFRET--------PSAVHKVIVETPYL-------NEEEIKKAVEIC 141 (225)
T ss_dssp TCSEEEEECCHHH-----HHTTCH-HHHHHHHHHHHHTC--------TTSEEEEECCGGGC-------CHHHHHHHHHHH
T ss_pred CCCEEEEEecHHH-----HhcCCh-HHHHHHHHHHHHHh--------cCceEEEEEeCCCC-------CHHHHHHHHHHH
Confidence 356655 89887 333332 33344455555442 2778888 4544 244577788888
Q ss_pred HHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCc
Q psy5880 130 LKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKV 209 (328)
Q Consensus 130 ~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~ 209 (328)
.+++ +|+|.+|.+- ..+. ...+.++.+++.. + .++| ||.+.+... ..++.+.+ ++|+
T Consensus 142 ~eaG--ad~I~tstg~--~~gg-------a~~~~i~~v~~~v---~--~~ip--Via~GGI~t--~~da~~~l---~aGA 198 (225)
T 1mzh_A 142 IEAG--ADFIKTSTGF--APRG-------TTLEEVRLIKSSA---K--GRIK--VKASGGIRD--LETAISMI---EAGA 198 (225)
T ss_dssp HHHT--CSEEECCCSC--SSSC-------CCHHHHHHHHHHH---T--TSSE--EEEESSCCS--HHHHHHHH---HTTC
T ss_pred HHhC--CCEEEECCCC--CCCC-------CCHHHHHHHHHHh---C--CCCc--EEEECCCCC--HHHHHHHH---HhCc
Confidence 7777 9999655421 0111 1224444555442 1 2444 566666543 34555555 5899
Q ss_pred cEEE
Q psy5880 210 DGLI 213 (328)
Q Consensus 210 d~i~ 213 (328)
|.|-
T Consensus 199 ~~iG 202 (225)
T 1mzh_A 199 DRIG 202 (225)
T ss_dssp SEEE
T ss_pred hHHH
Confidence 9653
No 416
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=93.71 E-value=0.91 Score=40.80 Aligned_cols=87 Identities=7% Similarity=0.076 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHH-hcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHH
Q psy5880 119 ADVVLDSVKGILK-FGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKD 197 (328)
Q Consensus 119 ~~~i~~~~~~a~~-~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ 197 (328)
.+....+++-... .+ .|++.++-+ . |....-..+.-.++++.+.+... .++||++=++...+ ++..+
T Consensus 23 ~~~l~~lv~~li~~~G--v~gl~~~Gt--t--GE~~~Ls~~Er~~v~~~~~~~~~-----grvpviaGvg~~~t-~~ai~ 90 (293)
T 1f6k_A 23 EKGLRQIIRHNIDKMK--VDGLYVGGS--T--GENFMLSTEEKKEIFRIAKDEAK-----DQIALIAQVGSVNL-KEAVE 90 (293)
T ss_dssp HHHHHHHHHHHHHTSC--CSEEEESSG--G--GTGGGSCHHHHHHHHHHHHHHHT-----TSSEEEEECCCSCH-HHHHH
T ss_pred HHHHHHHHHHHHhhCC--CcEEEeCcc--c--cchhhCCHHHHHHHHHHHHHHhC-----CCCeEEEecCCCCH-HHHHH
Confidence 3556666666555 55 899986544 1 32222233444566666665532 47899998877544 46788
Q ss_pred HHHHhccccCCccEEEEecCCc
Q psy5880 198 IADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 198 ~a~~l~~~~~G~d~i~~~n~~~ 219 (328)
+++.+ +++|+|++.+....+
T Consensus 91 la~~a--~~~Gadavlv~~P~y 110 (293)
T 1f6k_A 91 LGKYA--TELGYDCLSAVTPFY 110 (293)
T ss_dssp HHHHH--HHHTCSEEEEECCCS
T ss_pred HHHHH--HhcCCCEEEECCCCC
Confidence 89999 899999998876554
No 417
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=93.71 E-value=0.55 Score=43.91 Aligned_cols=153 Identities=8% Similarity=0.022 Sum_probs=79.1
Q ss_pred hhHHHHHHHhHHHHHHHhhcC-ccceEEeccCC---------CCCcC-----ccCCCc-hHHHHHHHHHHHHHhhhhcCC
Q psy5880 34 FARMRAWVLQFWLLGILKFGD-VAHYFVVNVSS---------PNTAN-----LRKLQA-KDQLKHLLKTVVETRNQLALK 97 (328)
Q Consensus 34 ~~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~ss---------pN~~g-----l~~~~~-~~~L~~ll~~v~~~~~~~~~~ 97 (328)
...+. .++++|.+.++.+.. -.|.|++|.+| |++-- --++.+ ..-+.+++++|++.- +
T Consensus 158 ~~eI~-~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~av---g-- 231 (377)
T 2r14_A 158 TDEIP-GIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVF---G-- 231 (377)
T ss_dssp GGGHH-HHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH---C--
T ss_pred HHHHH-HHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHc---C--
Confidence 34443 467889888875432 36899999775 75421 112221 222455556665553 2
Q ss_pred CCCcchhcccCCccccc--ccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhc
Q psy5880 98 PLPPILVKIAPDLSLDE--KKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA 175 (328)
Q Consensus 98 ~~~Pv~vki~~~l~~~~--n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~ 175 (328)
.. |+.+|+.+.-.... ...+.+...++++.++.++ +|+|++.... ........ ..++++.|++.
T Consensus 232 ~~-~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~G--vd~i~v~~~~--~~~~~~~~----~~~~~~~ik~~----- 297 (377)
T 2r14_A 232 PE-RVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRG--LAYLHFNEPD--WIGGDITY----PEGFREQMRQR----- 297 (377)
T ss_dssp GG-GEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTT--CSEEEEECCC--------CC----CTTHHHHHHHH-----
T ss_pred CC-cEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcC--CCEEEEeCCc--ccCCCCcc----hHHHHHHHHHH-----
Confidence 13 89999876421110 0012234445555555555 9999975421 10000000 12455666665
Q ss_pred CCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 176 VKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 176 ~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.++||++= .+++. ....+.+ .+-++|+|.+.
T Consensus 298 --~~iPvi~~--Ggi~~---~~a~~~l--~~g~aD~V~ig 328 (377)
T 2r14_A 298 --FKGGLIYC--GNYDA---GRAQARL--DDNTADAVAFG 328 (377)
T ss_dssp --CCSEEEEE--SSCCH---HHHHHHH--HTTSCSEEEES
T ss_pred --CCCCEEEE--CCCCH---HHHHHHH--HCCCceEEeec
Confidence 67898863 33443 3344444 44449998664
No 418
>3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A*
Probab=93.71 E-value=1.1 Score=42.11 Aligned_cols=133 Identities=12% Similarity=0.120 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 121 VVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 121 ~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
..+++++.++++.. ++..+-+.++.+... .....+.+.-.+.+++||++ ++ .+++|++.....++.++...++
T Consensus 148 ~~e~~~~~a~~~~~~Gf~~~KlKvg~~~~~-~~~~~~~~~d~~~v~avR~a---~g--~~~~l~vDaN~~w~~~~A~~~~ 221 (392)
T 3v5c_A 148 AVALMQEEAMQGYAKGQRHFKIKVGRGGRH-MPLWEGTKRDIAIVRGISEV---AG--PAGKIMIDANNAYNLNLTKEVL 221 (392)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEECCTTTTT-SCHHHHHHHHHHHHHHHHHH---HC--TTCCEEEECTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCcc-ccccccHHHHHHHHHHHHHH---cC--CCCcEEeeCCCCcCHHHHHHHH
Confidence 45666666655433 689999887743210 00111234445566666665 34 6889999999999988888999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHH-----cCCCccEEEecCCCCHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKL-----TKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~-----~~~~ipvia~GGI~s~~da 274 (328)
+.+ .+.++.+|- .| +. + .++..+++++. .+ +||.+.=.+. ..++
T Consensus 222 ~~L--~~~~l~~iE-------eP-------------~~--~----d~~~~~~l~~~~~~~~~~--ipIa~gE~~~-~~~~ 270 (392)
T 3v5c_A 222 AAL--SDVNLYWLE-------AA-------------FH--E----DEALYEDLKEWLGQRGQN--VLIADGEGLA-SPHL 270 (392)
T ss_dssp HHT--TTSCCCEEE-------CS-------------SS--C----CHHHHHHHHHHHHHHTCC--CEEEECCSSC-CTTH
T ss_pred Hhc--ccCCCeEEe-------CC-------------CC--c----CHHHHHHHHHhhccCCCC--CcEECCCccc-HHHH
Confidence 999 887776661 11 11 0 12334555554 34 7766655556 7788
Q ss_pred HHHHHhc-cCeeeehhH
Q psy5880 275 FEKIKAG-ASLVQIYTS 290 (328)
Q Consensus 275 ~~~l~~G-Ad~V~vg~a 290 (328)
.++++.| +|.|++=-.
T Consensus 271 ~~li~~~a~dii~~d~~ 287 (392)
T 3v5c_A 271 IEWATRGRVDVLQYDII 287 (392)
T ss_dssp HHHHHTTSCCEECCBTT
T ss_pred HHHHHcCCCcEEEeCCC
Confidence 8899887 888887543
No 419
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=93.70 E-value=0.43 Score=44.20 Aligned_cols=106 Identities=16% Similarity=0.082 Sum_probs=68.2
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCc--c-ch-h---h-hccc---cccc--------cCCCCC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTV--D-RY-E---Y-LDAR---YKEE--------TGGLSG 238 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~--~-~~-~---~-~~~~---~~~~--------~gg~sg 238 (328)
.+-|.+..+=..-+.+...++++.+ +++|+.+|+++=-.. + +. + + ..|. +... ..++..
T Consensus 120 ~~~~~wfQlY~~~d~~~~~~l~~ra--~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 197 (352)
T 3sgz_A 120 PEGFRWFQLYMKSDWDFNKQMVQRA--EALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPV 197 (352)
T ss_dssp TTCEEEEECCCCSCHHHHHHHHHHH--HHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC--------------
T ss_pred cCccceeccccCCCHHHHHHHHHHH--HHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhh
Confidence 3468899887666777788999999 999999998763321 1 11 0 0 0110 0000 000100
Q ss_pred Cc-CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 239 EP-LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 239 ~~-~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
.. .....++.++.+++.++ +||+.- |+.+.+|+..+.++|||+|.+.
T Consensus 198 ~~~d~~~~w~~i~~lr~~~~--~PvivK-~v~~~e~A~~a~~~GaD~I~vs 245 (352)
T 3sgz_A 198 LFPKASFCWNDLSLLQSITR--LPIILK-GILTKEDAELAMKHNVQGIVVS 245 (352)
T ss_dssp -CCCTTCCHHHHHHHHHHCC--SCEEEE-EECSHHHHHHHHHTTCSEEEEC
T ss_pred hccCCCCCHHHHHHHHHhcC--CCEEEE-ecCcHHHHHHHHHcCCCEEEEe
Confidence 11 11245678899999887 898765 4689999999999999999883
No 420
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=93.64 E-value=0.67 Score=42.19 Aligned_cols=85 Identities=11% Similarity=0.065 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+....+++-.... +.|+|-++-+ | |....-..+.-.++++.+.+... .++||++=++ . +.++..+++
T Consensus 33 ~~l~~lv~~li~~--Gv~Gl~v~Gt---T-GE~~~Ls~eEr~~v~~~~v~~~~-----grvpViaGvg-~-~t~~ai~la 99 (316)
T 3e96_A 33 HHYKETVDRIVDN--GIDVIVPCGN---T-SEFYALSLEEAKEEVRRTVEYVH-----GRALVVAGIG-Y-ATSTAIELG 99 (316)
T ss_dssp HHHHHHHHHHHTT--TCCEECTTSG---G-GTGGGSCHHHHHHHHHHHHHHHT-----TSSEEEEEEC-S-SHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCEEEeCcc---c-cCcccCCHHHHHHHHHHHHHHhC-----CCCcEEEEeC-c-CHHHHHHHH
Confidence 4455555555444 4899865433 1 32222223344566666655532 4789999987 4 666788999
Q ss_pred HHhccccCCccEEEEecCCc
Q psy5880 200 DVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~ 219 (328)
+.+ +++|+|++.+....+
T Consensus 100 ~~A--~~~Gadavlv~~P~y 117 (316)
T 3e96_A 100 NAA--KAAGADAVMIHMPIH 117 (316)
T ss_dssp HHH--HHHTCSEEEECCCCC
T ss_pred HHH--HhcCCCEEEEcCCCC
Confidence 999 999999998875543
No 421
>3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP}
Probab=93.63 E-value=2.4 Score=39.75 Aligned_cols=134 Identities=8% Similarity=0.123 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++.. ++..+-+.++.+... .......+.-.+.+++||++ + .+..|.+.-...++.++..++++
T Consensus 166 ~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~-~~~~~~~~~di~~v~avR~a---~---~d~~L~vDaN~~w~~~~A~~~~~ 238 (393)
T 3u9i_A 166 VTAAARAAQAIVARGVTTIKIKIGAGDPD-ATTIRTMEHDLARIVAIRDV---A---PTARLILDGNCGYTAPDALRLLD 238 (393)
T ss_dssp CHHHHHHHHHHHTTTCCEEEEECC--------CHHHHHHHHHHHHHHHHH---S---TTSEEEEECCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeCCCccc-ccccccHHHHHHHHHHHHHH---C---CCCeEEEEccCCCCHHHHHHHHH
Confidence 4455555555433 688988887643210 00112234445566666665 3 35788888888899877778888
Q ss_pred Hhcccc--CCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHH
Q psy5880 201 VVLDSK--CKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278 (328)
Q Consensus 201 ~l~~~~--~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l 278 (328)
.+ .+ .++.+| .. |..+..++..+++++..+ +||.+.=.+.+..++.+++
T Consensus 239 ~L--~~~~~~i~~i-------Ee------------------P~~~~d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i 289 (393)
T 3u9i_A 239 ML--GVHGIVPALF-------EQ------------------PVAKDDEEGLRRLTATRR--VPVAADESVASATDAARLA 289 (393)
T ss_dssp TT--TTTTCCCSEE-------EC------------------CSCTTCTTHHHHHHHTCS--SCEEESTTCCSHHHHHHHH
T ss_pred HH--hhCCCCeEEE-------EC------------------CCCCCcHHHHHHHHhhCC--CcEEeCCcCCCHHHHHHHH
Confidence 77 32 233333 11 111122345677888876 9999988999999999999
Q ss_pred Hhc-cCeeeehhHH
Q psy5880 279 KAG-ASLVQIYTSF 291 (328)
Q Consensus 279 ~~G-Ad~V~vg~a~ 291 (328)
+.| +|.|++=-..
T Consensus 290 ~~~a~d~i~~k~~~ 303 (393)
T 3u9i_A 290 RNAAVDVLNIKLMK 303 (393)
T ss_dssp HTTCCSEEEECHHH
T ss_pred HcCCCCEEEecccc
Confidence 987 8888875443
No 422
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=93.60 E-value=0.66 Score=41.46 Aligned_cols=122 Identities=11% Similarity=0.076 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCC--hhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLS--LDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLS 237 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~--~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~s 237 (328)
+.+++..++..++. .+.||++.+..++. .++..+.++.+ .++|+.+|.+=.... ..
T Consensus 61 ~~em~~~~~~I~~~----~~~pviaD~d~Gyg~~~~~~~~~v~~l--~~aGaagv~iED~~~----------------~~ 118 (275)
T 2ze3_A 61 RDEMGREVEAIVRA----VAIPVNADIEAGYGHAPEDVRRTVEHF--AALGVAGVNLEDATG----------------LT 118 (275)
T ss_dssp HHHHHHHHHHHHHH----CSSCEEEECTTCSSSSHHHHHHHHHHH--HHTTCSEEEEECBCS----------------SS
T ss_pred HHHHHHHHHHHHhh----cCCCEEeecCCCCCCCHHHHHHHHHHH--HHcCCcEEEECCCcC----------------CC
Confidence 34444444444332 57899999988753 45677888888 889999998765321 01
Q ss_pred CCcCchH--HHHHHHHHHHHcCC-CccEEEecCCCC------------HHH----HHHHHHhccCeeeehhHHhhcCchH
Q psy5880 238 GEPLRNK--STELISEMYKLTKG-KLPIIGVGGVFS------------GKD----AFEKIKAGASLVQIYTSFVYHGPPL 298 (328)
Q Consensus 238 g~~~~~~--~l~~v~~i~~~~~~-~ipvia~GGI~s------------~~d----a~~~l~~GAd~V~vg~a~l~~gp~~ 298 (328)
|..+.|. ..+.|+.++++-.. .+|+...|-... .++ +..+.++|||+|.+=. + .+++.
T Consensus 119 ~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~-~--~~~~~ 195 (275)
T 2ze3_A 119 PTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVPL-A--LQSQD 195 (275)
T ss_dssp SSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTT-C--CCHHH
T ss_pred CCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEECC-C--CCHHH
Confidence 2222222 23444544444110 256665555433 233 3345568999988754 2 23566
Q ss_pred HHHHHHHH
Q psy5880 299 VTRIKSEL 306 (328)
Q Consensus 299 ~~~i~~~l 306 (328)
++++.+.+
T Consensus 196 ~~~i~~~~ 203 (275)
T 2ze3_A 196 IRALADAL 203 (275)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 66666554
No 423
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=93.60 E-value=0.13 Score=47.06 Aligned_cols=137 Identities=12% Similarity=0.159 Sum_probs=81.8
Q ss_pred hHHHHHHHhhcCccceEEeccCCCCCc------CccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCccccccc
Q psy5880 43 QFWLLGILKFGDVAHYFVVNVSSPNTA------NLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKK 116 (328)
Q Consensus 43 ~~y~~~~~~l~~~~~~v~~n~sspN~~------gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~ 116 (328)
++|.+.++.+....|.|++|..||.+. |-.-..+++-+.++++++++.- ..|+.+|+.++++..
T Consensus 71 ~~~~~aa~~a~~~~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~-------~~pv~vKir~G~~~~--- 140 (318)
T 1vhn_A 71 NELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSV-------SGKFSVKTRLGWEKN--- 140 (318)
T ss_dssp HHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHC-------SSEEEEEEESCSSSC---
T ss_pred HHHHHHHHHHHHhCCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhh-------CCCEEEEecCCCChH---
Confidence 478887887665589999999999752 2222235677888888887653 269999998865421
Q ss_pred chhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHH
Q psy5880 117 DIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKK 196 (328)
Q Consensus 117 ~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~ 196 (328)
+. .++++.++.++ +|+|.++-..... +.. .+.. .+++..|+ . ++||++= .++.. ..
T Consensus 141 ---~~-~~~a~~l~~~G--~d~i~v~g~~~~~-~~~---~~~~-~~~i~~i~--------~-~ipVi~~--GgI~s--~~ 196 (318)
T 1vhn_A 141 ---EV-EEIYRILVEEG--VDEVFIHTRTVVQ-SFT---GRAE-WKALSVLE--------K-RIPTFVS--GDIFT--PE 196 (318)
T ss_dssp ---CH-HHHHHHHHHTT--CCEEEEESSCTTT-TTS---SCCC-GGGGGGSC--------C-SSCEEEE--SSCCS--HH
T ss_pred ---HH-HHHHHHHHHhC--CCEEEEcCCCccc-cCC---CCcC-HHHHHHHH--------c-CCeEEEE--CCcCC--HH
Confidence 12 27777777777 9999986332110 100 0000 12222221 1 5788763 33321 34
Q ss_pred HHHHHhccccCCccEEEEe
Q psy5880 197 DIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~ 215 (328)
++.+.+ .+.|+|+|.+.
T Consensus 197 da~~~l--~~~gad~V~iG 213 (318)
T 1vhn_A 197 DAKRAL--EESGCDGLLVA 213 (318)
T ss_dssp HHHHHH--HHHCCSEEEES
T ss_pred HHHHHH--HcCCCCEEEEC
Confidence 455555 55799999655
No 424
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=93.57 E-value=0.94 Score=41.27 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
+....+++-.... +.|+|-++-+ . |....-..+.-.++++.+.+... .++||++=++.. +.++..+++
T Consensus 32 ~~l~~lv~~li~~--Gv~gl~v~Gt--T--GE~~~Ls~~Er~~v~~~~~~~~~-----grvpviaGvg~~-~t~~ai~la 99 (318)
T 3qfe_A 32 ASQERYYAYLARS--GLTGLVILGT--N--AEAFLLTREERAQLIATARKAVG-----PDFPIMAGVGAH-STRQVLEHI 99 (318)
T ss_dssp HHHHHHHHHHHTT--TCSEEEESSG--G--GTGGGSCHHHHHHHHHHHHHHHC-----TTSCEEEECCCS-SHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCEEEeCcc--c--cChhhCCHHHHHHHHHHHHHHhC-----CCCcEEEeCCCC-CHHHHHHHH
Confidence 4455555544444 4999987544 1 32221223344556666655531 578999977664 445688999
Q ss_pred HHhccccCCccEEEEecC
Q psy5880 200 DVVLDSKCKVDGLIVSNT 217 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~ 217 (328)
+.+ +++|+|++.+...
T Consensus 100 ~~a--~~~Gadavlv~~P 115 (318)
T 3qfe_A 100 NDA--SVAGANYVLVLPP 115 (318)
T ss_dssp HHH--HHHTCSEEEECCC
T ss_pred HHH--HHcCCCEEEEeCC
Confidence 999 9999999988665
No 425
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=93.55 E-value=0.29 Score=45.31 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=53.7
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ -++- ..-.+.++. .+.+++|||+.-|=.
T Consensus 44 ID~~~l~~lv~~l--i~~Gv~Gl~v~GtTGE~~------------~Ls~----eEr~~vi~~---~~~grvpViaGvg~~ 102 (344)
T 2hmc_A 44 PDFDALVRKGKEL--IADGMSAVVYCGSMGDWP------------LLTD----EQRMEGVER---LVKAGIPVIVGTGAV 102 (344)
T ss_dssp BCHHHHHHHHHHH--HHTTCCCEEESSGGGTGG------------GSCH----HHHHHHHHH---HHHTTCCEEEECCCS
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEeCccCcChh------------hCCH----HHHHHHHHH---HhCCCCcEEEecCCC
Confidence 4556688899999 899999999888765421 0110 111223332 334569998655555
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhhc
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVYH 294 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~~ 294 (328)
+-+++.+.. ++|||+|++....++.
T Consensus 103 st~eai~la~~A~~~Gadavlv~~P~y~~ 131 (344)
T 2hmc_A 103 NTASAVAHAVHAQKVGAKGLMVIPRVLSR 131 (344)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCCSSS
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCccCC
Confidence 655555433 4899999999988643
No 426
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=93.49 E-value=1.1 Score=39.76 Aligned_cols=110 Identities=13% Similarity=0.016 Sum_probs=65.6
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcC
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTK 257 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 257 (328)
.+.||++|-..+.+.+++...+..+ ...|-.-+++.-+...+ +| ......+..+..+++.
T Consensus 117 ~~~PV~lK~G~~~t~~e~~~Av~~i--~~~GN~~i~L~~rG~~~-------------~y---~~~~~dl~~i~~lk~~-- 176 (267)
T 2nwr_A 117 TGRAVNVKKGQFLAPWDTKNVVEKL--KFGGAKEIYLTERGTTF-------------GY---NNLVVDFRSLPIMKQW-- 176 (267)
T ss_dssp TTSEEEEECCTTCCGGGGHHHHHHH--HHTTCSSEEEEECCEEC-------------SS---SCEECCTTHHHHHTTT--
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHH--HHcCCCeEEEEECCCCC-------------CC---CccccCHHHHHHHHHc--
Confidence 6899999998877777888888888 88897666665443210 11 1101234455666654
Q ss_pred CCccEEEe-----------cCCCCH------HHHHHHHHhccCeeeehhHHh-----hc-----CchHHHHHHHHHHHH
Q psy5880 258 GKLPIIGV-----------GGVFSG------KDAFEKIKAGASLVQIYTSFV-----YH-----GPPLVTRIKSELEEL 309 (328)
Q Consensus 258 ~~ipvia~-----------GGI~s~------~da~~~l~~GAd~V~vg~a~l-----~~-----gp~~~~~i~~~l~~~ 309 (328)
. ||+.. ++-+.+ .-+..++..||++++|=+-+- .+ .|+-++++.+.++..
T Consensus 177 -~-pVivD~sH~~q~p~G~s~hs~g~~~~~~~ia~aava~Ga~G~mIE~H~~pd~al~Dg~qsl~p~~l~~l~~~i~~~ 253 (267)
T 2nwr_A 177 -A-KVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLSQLEGIIEAILEI 253 (267)
T ss_dssp -S-EEEEETTGGGCCTTC------CCGGGHHHHHHHHHHHCCSEEEEEEESCGGGCSSCTTTCEEGGGHHHHHHHHHHH
T ss_pred -C-CEEEcCCcccccCCCcCcCCCCchhHHHHHHHHHHHcCCCEEEEEecCCcccCCCccccCCCHHHHHHHHHHHHHH
Confidence 2 77662 222222 335567789999888854321 11 256677777776653
No 427
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=93.47 E-value=1.1 Score=41.77 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=79.0
Q ss_pred hhhHHHHHHHhHHHHHHHhhcC-ccceEEeccCC---------CCCcC-----ccCCCch-HHHHHHHHHHHHHhhhhcC
Q psy5880 33 SFARMRAWVLQFWLLGILKFGD-VAHYFVVNVSS---------PNTAN-----LRKLQAK-DQLKHLLKTVVETRNQLAL 96 (328)
Q Consensus 33 ~~~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~ss---------pN~~g-----l~~~~~~-~~L~~ll~~v~~~~~~~~~ 96 (328)
....+. .++++|.+.++.+.. -.|.|++|.++ |++-. --++.+. .-+.+++++|++...
T Consensus 144 t~~eI~-~ii~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg---- 218 (362)
T 4ab4_A 144 ETEEIN-DIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWG---- 218 (362)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHC----
T ss_pred CHHHHH-HHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcC----
Confidence 345565 466889988886432 25889999876 65421 0122222 224556666665542
Q ss_pred CCCCcchhcccCCccccccc--chhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhh
Q psy5880 97 KPLPPILVKIAPDLSLDEKK--DIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL 174 (328)
Q Consensus 97 ~~~~Pv~vki~~~l~~~~n~--~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~ 174 (328)
.. |+.+|+.+.-..+... ...+...++++.++.++ +|+|++... .. + + ++++.|++.
T Consensus 219 -~~-~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~G--vd~i~v~~~--~~-~------~----~~~~~ik~~---- 277 (362)
T 4ab4_A 219 -AQ-RVGVHLAPRADAHDMGDADRAETFTYVARELGKRG--IAFICSRER--EA-D------D----SIGPLIKEA---- 277 (362)
T ss_dssp -GG-GEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTT--CSEEEEECC--CC-T------T----CCHHHHHHH----
T ss_pred -CC-ceEEEeeccccccccCCCCcHHHHHHHHHHHHHhC--CCEEEECCC--CC-C------H----HHHHHHHHH----
Confidence 13 8999988742111110 01233445555555554 999986433 21 1 1 345666666
Q ss_pred cCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 175 AVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 175 ~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.++||++=- +++. ....+.+ .+-++|+|.+.
T Consensus 278 ---~~iPvi~~G--git~---e~a~~~l--~~g~aD~V~iG 308 (362)
T 4ab4_A 278 ---FGGPYIVNE--RFDK---ASANAAL--ASGKADAVAFG 308 (362)
T ss_dssp ---HCSCEEEES--SCCH---HHHHHHH--HTTSCSEEEES
T ss_pred ---CCCCEEEeC--CCCH---HHHHHHH--HcCCccEEEEC
Confidence 467987642 2353 3333444 44449988654
No 428
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=93.42 E-value=0.95 Score=42.07 Aligned_cols=152 Identities=10% Similarity=0.114 Sum_probs=79.0
Q ss_pred hhHHHHHHHhHHHHHHHhhcC-ccceEEeccCC---------CCCcC-----ccCCC-chHHHHHHHHHHHHHhhhhcCC
Q psy5880 34 FARMRAWVLQFWLLGILKFGD-VAHYFVVNVSS---------PNTAN-----LRKLQ-AKDQLKHLLKTVVETRNQLALK 97 (328)
Q Consensus 34 ~~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~ss---------pN~~g-----l~~~~-~~~~L~~ll~~v~~~~~~~~~~ 97 (328)
...+. .++++|.+.++.+.. -.|.|++|.+| |++.- --++. ...-+.+++++|++.- +
T Consensus 153 ~~eI~-~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~v---g-- 226 (364)
T 1vyr_A 153 LDEIP-GIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEW---S-- 226 (364)
T ss_dssp GGGHH-HHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHS---C--
T ss_pred HHHHH-HHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhc---C--
Confidence 33443 466889888876432 36899999764 65321 01111 1222445555555543 2
Q ss_pred CCCcchhcccCCccccc---ccchhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhh
Q psy5880 98 PLPPILVKIAPDLSLDE---KKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL 174 (328)
Q Consensus 98 ~~~Pv~vki~~~l~~~~---n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~ 174 (328)
.. |+.+|+.+.-.... ...+.+...++++.++.++ +|+|++.... ...... . ..+.++.|++.
T Consensus 227 ~~-~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G--~d~i~v~~~~--~~~~~~--~---~~~~~~~v~~~---- 292 (364)
T 1vyr_A 227 AD-RIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRG--IAYLHMSETD--LAGGKP--Y---SEAFRQKVRER---- 292 (364)
T ss_dssp GG-GEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTT--CSEEEEECCB--TTBCCC--C---CHHHHHHHHHH----
T ss_pred CC-cEEEEEccccccccccCCCCCHHHHHHHHHHHHHhC--CCEEEEecCc--ccCCCc--c---cHHHHHHHHHH----
Confidence 23 89999887521110 0112233444555555554 9999975321 100000 1 12456666665
Q ss_pred cCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 175 AVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 175 ~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.++||++= .+++. .++.+.+ .+-++|+|.+.
T Consensus 293 ---~~iPvi~~--Ggit~---~~a~~~l--~~g~aD~V~~g 323 (364)
T 1vyr_A 293 ---FHGVIIGA--GAYTA---EKAEDLI--GKGLIDAVAFG 323 (364)
T ss_dssp ---CCSEEEEE--SSCCH---HHHHHHH--HTTSCSEEEES
T ss_pred ---CCCCEEEE--CCcCH---HHHHHHH--HCCCccEEEEC
Confidence 67898764 23343 3444445 44449998664
No 429
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=93.41 E-value=1.4 Score=39.89 Aligned_cols=87 Identities=9% Similarity=0.007 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|+|-++-+ . |....-..+.-.++++.+.+... .++||++=++...+ ++..++
T Consensus 28 ~~~l~~lv~~li~~G--v~gl~v~Gt--T--GE~~~Ls~~Er~~v~~~~~~~~~-----grvpviaGvg~~~t-~~ai~l 95 (309)
T 3fkr_A 28 LASQKRAVDFMIDAG--SDGLCILAN--F--SEQFAITDDERDVLTRTILEHVA-----GRVPVIVTTSHYST-QVCAAR 95 (309)
T ss_dssp HHHHHHHHHHHHHTT--CSCEEESSG--G--GTGGGSCHHHHHHHHHHHHHHHT-----TSSCEEEECCCSSH-HHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc--c--cCcccCCHHHHHHHHHHHHHHhC-----CCCcEEEecCCchH-HHHHHH
Confidence 345556665555444 999986544 1 33222223444566666655532 47899999877544 467889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 96 a~~A--~~~Gadavlv~~Pyy 114 (309)
T 3fkr_A 96 SLRA--QQLGAAMVMAMPPYH 114 (309)
T ss_dssp HHHH--HHTTCSEEEECCSCB
T ss_pred HHHH--HHcCCCEEEEcCCCC
Confidence 9999 999999998875543
No 430
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=93.25 E-value=1.2 Score=38.98 Aligned_cols=133 Identities=12% Similarity=0.134 Sum_probs=79.1
Q ss_pred HHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHH
Q psy5880 49 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKG 128 (328)
Q Consensus 49 ~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~ 128 (328)
++..+.|.|++..-. |-..+...+.|++.++..|+++- + +.++-++.+.-.....+++|.+.
T Consensus 32 Le~~g~yID~lKfg~------Gt~~l~~~~~l~eki~l~~~~gV--------~----v~~GGTl~E~~~~qg~~~~yl~~ 93 (251)
T 1qwg_A 32 LKVCGDYIDFVKFGW------GTSAVIDRDVVKEKINYYKDWGI--------K----VYPGGTLFEYAYSKGKFDEFLNE 93 (251)
T ss_dssp HHHHGGGCSEEEECT------TGGGGSCHHHHHHHHHHHHTTTC--------E----EEECHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhhhhcceEEecC------ceeeecCHHHHHHHHHHHHHcCC--------e----EECCcHHHHHHHHcCcHHHHHHH
Confidence 445667778876543 22334457778988888887752 2 22333332222233468999999
Q ss_pred HHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCC-------CCChhhHHHHHHH
Q psy5880 129 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP-------DLSLDEKKDIADV 201 (328)
Q Consensus 129 a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~-------~~~~~~~~~~a~~ 201 (328)
++..+ +|+|||+-++-.. ..+...++++.+++. .+-+..=+.. ..+.+++.+.++.
T Consensus 94 ~k~lG--f~~iEiS~G~i~l-------~~~~~~~~I~~~~~~--------G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~ 156 (251)
T 1qwg_A 94 CEKLG--FEAVEISDGSSDI-------SLEERNNAIKRAKDN--------GFMVLTEVGKKMPDKDKQLTIDDRIKLINF 156 (251)
T ss_dssp HHHHT--CCEEEECCSSSCC-------CHHHHHHHHHHHHHT--------TCEEEEEECCSSHHHHTTCCHHHHHHHHHH
T ss_pred HHHcC--CCEEEECCCcccC-------CHHHHHHHHHHHHHC--------CCEEeeeccccCCcccCCCCHHHHHHHHHH
Confidence 99998 9999986553221 122334444444432 2333222211 2455677777787
Q ss_pred hccccCCccEEEEecCC
Q psy5880 202 VLDSKCKVDGLIVSNTT 218 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~ 218 (328)
. .++||+.|.+=++-
T Consensus 157 ~--LeAGA~~ViiEarE 171 (251)
T 1qwg_A 157 D--LDAGADYVIIEGRE 171 (251)
T ss_dssp H--HHHTCSEEEECCTT
T ss_pred H--HHCCCcEEEEeeec
Confidence 7 89999999886653
No 431
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=93.24 E-value=0.6 Score=43.51 Aligned_cols=106 Identities=22% Similarity=0.205 Sum_probs=66.9
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCcc---ch-h---hh-cc----ccc-----cccC-CC---
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVD---RY-E---YL-DA----RYK-----EETG-GL--- 236 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~---~~-~---~~-~~----~~~-----~~~g-g~--- 236 (328)
.+.|+++-|-...+.+...++++.+ +++|++++.++-.... +. + .. .| ... ...| .+
T Consensus 131 ~~~~~~~QLy~~~d~~~~~~~~~ra--~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~ 208 (368)
T 2nli_A 131 NGGPRWFQIYMAKDDQQNRDILDEA--KSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNI 208 (368)
T ss_dssp TTCCEEEEECCBSSHHHHHHHHHHH--HHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHH--HHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhh
Confidence 3568999885544555677888999 8999999887633211 10 0 00 01 000 0001 11
Q ss_pred CCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 237 SGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 237 sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
+........++.++.+++.++ +||+.- |+.+++++..+.++|||+|.|.
T Consensus 209 ~~~~d~~~~~~~i~~lr~~~~--~PvivK-~v~~~e~a~~a~~~Gad~I~vs 257 (368)
T 2nli_A 209 YGASKQKISPRDIEEIAGHSG--LPVFVK-GIQHPEDADMAIKRGASGIWVS 257 (368)
T ss_dssp CTTBCSBCCHHHHHHHHHHSS--SCEEEE-EECSHHHHHHHHHTTCSEEEEC
T ss_pred hhccCchhhHHHHHHHHHHcC--CCEEEE-cCCCHHHHHHHHHcCCCEEEEc
Confidence 110012234677899999886 898876 4799999999999999999984
No 432
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=93.18 E-value=4.4 Score=36.05 Aligned_cols=174 Identities=13% Similarity=0.109 Sum_probs=93.2
Q ss_pred CcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCCCC
Q psy5880 68 TANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPN 147 (328)
Q Consensus 68 ~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn 147 (328)
+.|+++.. .-.+.+.+..++...... ..|+.+-++-+- +. ..+.+...+....+++ +.++.|-=...+
T Consensus 50 ~~G~pD~~-~vt~~em~~~~~~I~~~~----~~pviaD~d~Gy--g~---~~~~~~~~v~~l~~aG--aagv~iED~~~~ 117 (275)
T 2ze3_A 50 ARGRTDGQ-TLTRDEMGREVEAIVRAV----AIPVNADIEAGY--GH---APEDVRRTVEHFAALG--VAGVNLEDATGL 117 (275)
T ss_dssp HSCCCSSS-SSCHHHHHHHHHHHHHHC----SSCEEEECTTCS--SS---SHHHHHHHHHHHHHTT--CSEEEEECBCSS
T ss_pred hCCCCCCC-CCCHHHHHHHHHHHHhhc----CCCEEeecCCCC--CC---CHHHHHHHHHHHHHcC--CcEEEECCCcCC
Confidence 45666543 222344444444333211 257766655431 11 1233444444444455 777655211111
Q ss_pred CcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEE--EeCCCC---------ChhhHHHHHHHhccccCCccEEEEec
Q psy5880 148 TANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILV--KIAPDL---------SLDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 148 ~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~v--Kl~~~~---------~~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
++. ..-..+...+-+++++++++.. ++|+.+ |.-... ..++..+=++.+ .++|+|.|.+.+
T Consensus 118 -~~k-~l~~~~e~~~~I~aa~~a~~~~----g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay--~eAGAd~i~~e~ 189 (275)
T 2ze3_A 118 -TPT-ELYDLDSQLRRIEAARAAIDAS----GVPVFLNARTDTFLKGHGATDEERLAETVRRGQAY--ADAGADGIFVPL 189 (275)
T ss_dssp -SSS-CBCCHHHHHHHHHHHHHHHHHH----TSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHH--HHTTCSEEECTT
T ss_pred -CCC-ccCCHHHHHHHHHHHHHhHhhc----CCCeEEEEechhhhccccccchhhHHHHHHHHHHH--HHCCCCEEEECC
Confidence 121 1223344556666666664321 355444 543322 134555556777 899999997654
Q ss_pred CCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecC--CCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 217 TTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGG--VFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 217 ~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GG--I~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
. . ..+.++++.+.++ +|+-.+.+ ..+ ..++-+.|...|..+..++
T Consensus 190 ~-~-------------------------~~~~~~~i~~~~~--~P~n~~~~~~~~~---~~eL~~lGv~~v~~~~~~~ 236 (275)
T 2ze3_A 190 A-L-------------------------QSQDIRALADALR--VPLNVMAFPGSPV---PRALLDAGAARVSFGQSLM 236 (275)
T ss_dssp C-C-------------------------CHHHHHHHHHHCS--SCEEEECCTTSCC---HHHHHHTTCSEEECTTHHH
T ss_pred C-C-------------------------CHHHHHHHHHhcC--CCEEEecCCCCCC---HHHHHHcCCcEEEEChHHH
Confidence 2 1 1356788888887 88866643 344 4666679999999987765
No 433
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=93.14 E-value=0.86 Score=41.28 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+.+.+.++..-. +.|+|-++-+ . |....-..+.-.++++.+.+.. . .++||++=++.. +.++..++++.
T Consensus 35 ~~l~~lv~~li~~Gv~Gl~v~Gt--T--GE~~~Ls~~Er~~v~~~~~~~~---~--gr~pviaGvg~~-~t~~ai~la~~ 104 (307)
T 3s5o_A 35 GKLEENLHKLGTFPFRGFVVQGS--N--GEFPFLTSSERLEVVSRVRQAM---P--KNRLLLAGSGCE-STQATVEMTVS 104 (307)
T ss_dssp HHHHHHHHHHTTSCCSEEEESSG--G--GTGGGSCHHHHHHHHHHHHHTS---C--TTSEEEEECCCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECcc--c--cchhhCCHHHHHHHHHHHHHHc---C--CCCcEEEecCCC-CHHHHHHHHHH
Confidence 333344443333 5999986544 1 3222122334455666655542 2 478999977654 34567889999
Q ss_pred hccccCCccEEEEecCCc
Q psy5880 202 VLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~ 219 (328)
+ +++|+|++.+....+
T Consensus 105 A--~~~Gadavlv~~P~y 120 (307)
T 3s5o_A 105 M--AQVGADAAMVVTPCY 120 (307)
T ss_dssp H--HHTTCSEEEEECCCT
T ss_pred H--HHcCCCEEEEcCCCc
Confidence 9 999999998865543
No 434
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1
Probab=93.10 E-value=0.73 Score=43.08 Aligned_cols=122 Identities=10% Similarity=0.030 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhc-ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFG-DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~-~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++. .++..+-+.++ |. .-.+.+++|+++. .++.+.+.....++.++. .+++
T Consensus 162 ~~~~~~~a~~~~~~G~~~~KiKvg-~~-----------~d~~~v~avr~a~------~~~~l~vDaN~~~~~~~a-~~~~ 222 (386)
T 1wue_A 162 LPQLLKQVQLAVEKGYQRVKLKIR-PG-----------YDVEPVALIRQHF------PNLPLMVDANSAYTLADL-PQLQ 222 (386)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEECB-TT-----------BSHHHHHHHHHHC------TTSCEEEECTTCCCGGGH-HHHH
T ss_pred HHHHHHHHHHHHHhhhheEEEeeC-cH-----------HHHHHHHHHHHhC------CCCeEEEeCCCCCCHHHH-HHHH
Confidence 344555555443 25777776654 21 1135567777762 367899998888888887 8888
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.++.+|- .| +.+..++..+++++.++ +||.+-=.+.+..++.++++.
T Consensus 223 ~l--~~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~i~~ 273 (386)
T 1wue_A 223 RL--DHYQLAMIE-------QP------------------FAADDFLDHAQLQRELK--TRICLDENIRSLKDCQVALAL 273 (386)
T ss_dssp GG--GGSCCSCEE-------CC------------------SCTTCSHHHHHHHTTCS--SCEEECTTCCSHHHHHHHHHH
T ss_pred HH--HhCCCeEEe-------CC------------------CCcccHHHHHHHHHhcC--CCEEeCCccCCHHHHHHHHHc
Confidence 88 777766551 11 11112345677777776 999998889999999999998
Q ss_pred c-cCeeeehhHH
Q psy5880 281 G-ASLVQIYTSF 291 (328)
Q Consensus 281 G-Ad~V~vg~a~ 291 (328)
| +|.|++=-.-
T Consensus 274 ~a~d~i~ik~~~ 285 (386)
T 1wue_A 274 GSCRSINLKIPR 285 (386)
T ss_dssp TCCSEEEECHHH
T ss_pred CCCCEEEEchhh
Confidence 7 8888875433
No 435
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=93.10 E-value=1.2 Score=40.06 Aligned_cols=129 Identities=11% Similarity=0.129 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC-ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCC-C
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDL-SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGL-S 237 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~-~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~-s 237 (328)
+.+++..++..++. .+.||++.+..++ +.++..+.++.+ .++|+.+|.+=..... + ..|+ .
T Consensus 60 ~~em~~~~~~I~~~----~~~PviaD~d~Gyg~~~~~~~~v~~l--~~aGa~gv~iED~~~~-------k----~cgH~~ 122 (290)
T 2hjp_A 60 MSTHLEMMRAIAST----VSIPLIADIDTGFGNAVNVHYVVPQY--EAAGASAIVMEDKTFP-------K----DTSLRT 122 (290)
T ss_dssp HHHHHHHHHHHHTT----CSSCEEEECTTTTSSHHHHHHHHHHH--HHHTCSEEEEECBCSS-------C----CC----
T ss_pred HHHHHHHHHHHHhc----CCCCEEEECCCCCCCHHHHHHHHHHH--HHhCCeEEEEcCCCCC-------c----cccccc
Confidence 55555555555432 6899999998775 445677778888 8899999988654321 0 1222 2
Q ss_pred --CCcCchHH--HHHHHHHHHHc-CCCccEEEecCCC----CHHHH----HHHHHhccCeeeehhHHhhcCchHHHHHHH
Q psy5880 238 --GEPLRNKS--TELISEMYKLT-KGKLPIIGVGGVF----SGKDA----FEKIKAGASLVQIYTSFVYHGPPLVTRIKS 304 (328)
Q Consensus 238 --g~~~~~~~--l~~v~~i~~~~-~~~ipvia~GGI~----s~~da----~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~ 304 (328)
|..+.|.. .+.|+.++++. .+++-|++=..-. ..+++ ..+.++|||+|.+=..+ .+++.++++.+
T Consensus 123 ~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~--~~~~~~~~i~~ 200 (290)
T 2hjp_A 123 DGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ--KTPDEILAFVK 200 (290)
T ss_dssp ---CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCC--SSSHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHHHHHHHHHHcCCcEEEeCCCC--CCHHHHHHHHH
Confidence 34455543 44555555542 1235566543322 13444 45556899999875533 23677777776
Q ss_pred HHH
Q psy5880 305 ELE 307 (328)
Q Consensus 305 ~l~ 307 (328)
.+.
T Consensus 201 ~~~ 203 (290)
T 2hjp_A 201 SWP 203 (290)
T ss_dssp HCC
T ss_pred HcC
Confidence 654
No 436
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=93.04 E-value=0.13 Score=46.66 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=52.6
Q ss_pred HHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHH
Q psy5880 196 KDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAF 275 (328)
Q Consensus 196 ~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~ 275 (328)
.++|+.. +++|++.|++-..... + ....+|. .+-..+++++++++.+. +||++-+++...++++
T Consensus 31 ~e~A~~y--e~~GA~~lsvLe~~~~--D------i~~~~g~----~R~~~~~~i~~i~~~v~--iPvl~k~~i~~ide~q 94 (297)
T 4adt_A 31 VEQAKIA--EKAGAIGVMILENIPS--E------LRNTDGV----ARSVDPLKIEEIRKCIS--INVLAKVRIGHFVEAQ 94 (297)
T ss_dssp HHHHHHH--HHHTCSEEEECCCCC-------------CCCC----CCCCCHHHHHHHHTTCC--SEEEEEEETTCHHHHH
T ss_pred HHHHHHH--HHcCCCEEEEecCCCC--c------chhcCCc----ccCCCHHHHHHHHHhcC--CCEEEeccCCcHHHHH
Confidence 3678888 8999999977631110 0 0011221 11123688999999997 9999998999999999
Q ss_pred HHHHhccCee
Q psy5880 276 EKIKAGASLV 285 (328)
Q Consensus 276 ~~l~~GAd~V 285 (328)
.+..+|||.|
T Consensus 95 il~aaGAD~I 104 (297)
T 4adt_A 95 ILEELKVDML 104 (297)
T ss_dssp HHHHTTCSEE
T ss_pred HHHHcCCCEE
Confidence 9999999999
No 437
>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum}
Probab=93.02 E-value=1.8 Score=40.49 Aligned_cols=126 Identities=10% Similarity=0.099 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+++++.++++.. ++..+-+.++.. ..+.-.+.+++||++. .+.+|.+.-...++.++..++++.
T Consensus 146 e~~~~~a~~~~~~G~~~iKlKvg~~---------~~~~d~~~v~avR~~~------~~~~L~vDaN~~w~~~~A~~~~~~ 210 (389)
T 3s5s_A 146 ERAEEAARRAAAMGFRALKVKVGGR---------LAASDPARIEAIHAAA------PGASLILDGNGGLTAGEALALVAH 210 (389)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCGG---------GTTTHHHHHHHHHHHC------TTCEEEEECTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEEecCC---------ChHHHHHHHHHHHHhC------CCCeEEEECCCCCCHHHHHHHHHH
Confidence 334444443322 588888776521 1223455677777762 356888888888998888888888
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+ .+.+.+ +...- . |+.+..++..+++++..+ +||.+.=.+.+..|+.++++.|
T Consensus 211 L--~~~~~~-i~~iE----e------------------P~~~~d~~~~~~l~~~~~--iPIa~dEs~~~~~~~~~~i~~~ 263 (389)
T 3s5s_A 211 A--RRLGAD-VALLE----Q------------------PVPRDDWDGMKEVTRRAG--VDVAADESAASAEDVLRVAAER 263 (389)
T ss_dssp H--HHTTCE-EEEEE----C------------------CSCTTCHHHHHHHHHHSS--SCEEESTTCSSHHHHHHHHHTT
T ss_pred H--hhCCCC-eEEEE----C------------------CCCcccHHHHHHHHhhCC--CCEEECCCCCCHHHHHHHHHcC
Confidence 7 433221 21111 1 112223566778888877 9999988999999999999987
Q ss_pred -cCeeeehhH
Q psy5880 282 -ASLVQIYTS 290 (328)
Q Consensus 282 -Ad~V~vg~a 290 (328)
+|.|++=-.
T Consensus 264 a~d~v~~k~~ 273 (389)
T 3s5s_A 264 AATVVNIKLM 273 (389)
T ss_dssp CCSEEEECHH
T ss_pred CCCEEEecCC
Confidence 888876433
No 438
>3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A*
Probab=92.97 E-value=3.3 Score=39.52 Aligned_cols=123 Identities=8% Similarity=0.006 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhc-c-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 122 VLDSVKGILKFG-D-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 122 i~~~~~~a~~~~-~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
.+++++.++++. . ++..+-+.++.. +++.-.+.+++||++. .+++|++.-...++.++...++
T Consensus 194 ~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------~~~~Di~~v~avRea~------~d~~L~vDaN~~w~~~~Ai~~~ 258 (445)
T 3vdg_A 194 PDGIVAQARRMIDEYGFSAIKLKGGVF---------APEEEMAAVEALRAAF------PDHPLRLDPNAAWTPQTSVKVA 258 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEECSSS---------CHHHHHHHHHHHHHHC------TTSCEEEECTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCC---------CHHHHHHHHHHHHHhC------CCCcEEEECCCCCCHHHHHHHH
Confidence 455555555442 2 588888776521 1222345667777662 4789999998889988888999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+. +.+| ..| + . .++..+++++.++ +||.+.-.+.+..++.++++
T Consensus 259 ~~L--~~~-l~~i-------EeP-------------~-----~--~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~l~ 306 (445)
T 3vdg_A 259 AGL--EGV-LEYL-------EDP-------------T-----P--GLDGMAEVAAQAP--MPLATNMCVVAFDQLPAAVA 306 (445)
T ss_dssp HHT--TTT-CSEE-------ECC-------------S-----S--SHHHHHHHHHHCS--SCEEESSSCCSGGGHHHHHH
T ss_pred HHH--hhH-HHee-------eCC-------------C-----C--CHHHHHHHHhcCC--CCEEcCCcCCCHHHHHHHHH
Confidence 998 766 6555 111 1 0 2456778888887 99999888999999999999
Q ss_pred hc-cCeeeehhHH
Q psy5880 280 AG-ASLVQIYTSF 291 (328)
Q Consensus 280 ~G-Ad~V~vg~a~ 291 (328)
.| +|.|++=-..
T Consensus 307 ~~a~div~~d~~~ 319 (445)
T 3vdg_A 307 KNSVQVVLSDHHY 319 (445)
T ss_dssp HTCCSEEEECHHH
T ss_pred cCCCCEEeeCcce
Confidence 88 8988875443
No 439
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=92.93 E-value=0.83 Score=41.03 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|++.++-+ . |....-..+.-.++++.+.+... .++||++=++...+ ++..++
T Consensus 21 ~~~l~~lv~~li~~G--v~gl~~~Gt--t--GE~~~Ls~~Er~~v~~~~~~~~~-----gr~pvi~Gvg~~~t-~~ai~l 88 (291)
T 3a5f_A 21 FDKLSELIEWHIKSK--TDAIIVCGT--T--GEATTMTETERKETIKFVIDKVN-----KRIPVIAGTGSNNT-AASIAM 88 (291)
T ss_dssp HHHHHHHHHHHHHTT--CCEEEESSG--G--GTGGGSCHHHHHHHHHHHHHHHT-----TSSCEEEECCCSSH-HHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc--c--cChhhCCHHHHHHHHHHHHHHhC-----CCCcEEEeCCcccH-HHHHHH
Confidence 345555555555544 999986544 1 32222233444566666665532 46899998877544 467889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 89 a~~a--~~~Gadavlv~~P~y 107 (291)
T 3a5f_A 89 SKWA--ESIGVDGLLVITPYY 107 (291)
T ss_dssp HHHH--HHTTCSEEEEECCCS
T ss_pred HHHH--HhcCCCEEEEcCCCC
Confidence 9999 999999998876554
No 440
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=92.80 E-value=2.7 Score=39.49 Aligned_cols=160 Identities=9% Similarity=0.066 Sum_probs=80.9
Q ss_pred hhHHHHHHHhHHHHHHHhhcC-ccceEEeccCC---------CCCcC-----ccCCCc-hHHHHHHHHHHHHHhhhhcCC
Q psy5880 34 FARMRAWVLQFWLLGILKFGD-VAHYFVVNVSS---------PNTAN-----LRKLQA-KDQLKHLLKTVVETRNQLALK 97 (328)
Q Consensus 34 ~~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~ss---------pN~~g-----l~~~~~-~~~L~~ll~~v~~~~~~~~~~ 97 (328)
...+. .++++|.+.++.+.. -.|.|++|.++ |++-- --++.+ ..-+.+++++|++.- +
T Consensus 163 ~~eI~-~ii~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~av---g-- 236 (402)
T 2hsa_B 163 TYEIS-QVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAI---G-- 236 (402)
T ss_dssp GGGHH-HHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH---C--
T ss_pred HHHHH-HHHHHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHh---C--
Confidence 44554 456889888886533 25899999864 76431 112221 222455666666553 2
Q ss_pred CCCcchhcccCCcccccccchhHHHHHHHHHHHHhcc-c------ccEEEEccCCCCC-cchh--hhhhhHHHHHHHHHH
Q psy5880 98 PLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGD-V------AHYFVVNVSSPNT-ANLR--KLQAKDQLKHLLKTV 167 (328)
Q Consensus 98 ~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~------~d~ieiN~scPn~-~g~~--~~~~~~~~~~i~~~v 167 (328)
. .|+.+|+.+.-...... .....+++.+.++.+.+ + +|+|++.-..-.. .... ....+....++++.|
T Consensus 237 ~-~~V~vRls~~~~~~g~~-~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 314 (402)
T 2hsa_B 237 A-DRVGVRVSPAIDHLDAM-DSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTL 314 (402)
T ss_dssp G-GGEEEEECSSCCSTTCC-CSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHH
T ss_pred C-CcEEEEeccccccCCCC-CCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHH
Confidence 1 28999988752111000 11223444444444443 4 8999875321110 0000 000111124566667
Q ss_pred HHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 168 VETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 168 ~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
++. .++||++= .+++. ....+.+ .+-++|+|.+.
T Consensus 315 k~~-------~~iPvi~~--G~i~~---~~a~~~l--~~g~aD~V~ig 348 (402)
T 2hsa_B 315 RNA-------YQGTFICS--GGYTR---ELGIEAV--AQGDADLVSYG 348 (402)
T ss_dssp HHH-------CSSCEEEE--SSCCH---HHHHHHH--HTTSCSEEEES
T ss_pred HHH-------CCCCEEEe--CCCCH---HHHHHHH--HCCCCceeeec
Confidence 766 67898863 33453 3334445 44459998654
No 441
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=92.78 E-value=5.3 Score=35.90 Aligned_cols=178 Identities=15% Similarity=0.156 Sum_probs=89.5
Q ss_pred CcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCC-C
Q psy5880 68 TANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSS-P 146 (328)
Q Consensus 68 ~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~sc-P 146 (328)
+.|+++.. .-.+.+.+..++..... ...|+.+-++-+- + ....+...+....+++ +.++.|-=.. |
T Consensus 53 ~lG~pD~~-~vt~~em~~~~~~I~~~----~~~PviaD~d~Gy--g----~~~~v~~~v~~l~~aG--aagv~iED~~~~ 119 (295)
T 1s2w_A 53 QLGVRDSN-EASWTQVVEVLEFMSDA----SDVPILLDADTGY--G----NFNNARRLVRKLEDRG--VAGACLEDKLFP 119 (295)
T ss_dssp TC----------CHHHHHHHHHHHHT----CSSCEEEECCSSC--S----SHHHHHHHHHHHHHTT--CCEEEEECBCC-
T ss_pred hCCCCCCC-CCCHHHHHHHHHHHHhc----CCCCEEecCCCCC--C----CHHHHHHHHHHHHHcC--CcEEEECCCCCC
Confidence 45665532 23345555554444321 2357766555431 1 1223334444444444 7776552111 2
Q ss_pred CCcchh-----hhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC---ChhhHHHHHHHhccccCCccEEEEecCC
Q psy5880 147 NTANLR-----KLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL---SLDEKKDIADVVLDSKCKVDGLIVSNTT 218 (328)
Q Consensus 147 n~~g~~-----~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~---~~~~~~~~a~~l~~~~~G~d~i~~~n~~ 218 (328)
...|+. .+-..+...+-++++++++. ..++-|..|.-..+ ..++..+=++++ .++|+|.|.+....
T Consensus 120 k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~----~~~~~i~aRtda~~a~~g~~~ai~Ra~ay--~eAGAd~i~~e~~~ 193 (295)
T 1s2w_A 120 KTNSLHDGRAQPLADIEEFALKIKACKDSQT----DPDFCIVARVEAFIAGWGLDEALKRAEAY--RNAGADAILMHSKK 193 (295)
T ss_dssp -------CTTCCBCCHHHHHHHHHHHHHHCS----STTCEEEEEECTTTTTCCHHHHHHHHHHH--HHTTCSEEEECCCS
T ss_pred ccccccCCCCCcccCHHHHHHHHHHHHHhcc----cCCcEEEEeehHHhccccHHHHHHHHHHH--HHcCCCEEEEcCCC
Confidence 111111 11112233444445444421 13556666765432 235666667888 89999999876421
Q ss_pred ccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecC---CCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 219 VDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGG---VFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 219 ~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GG---I~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
.. .+.++++.+.++..+|++++-+ -.+ +.++-+.|...|.++...+
T Consensus 194 ~~-------------------------~~~~~~i~~~~~~~~P~i~~~~~~~~~~---~~eL~~lGv~~v~~~~~~~ 242 (295)
T 1s2w_A 194 AD-------------------------PSDIEAFMKAWNNQGPVVIVPTKYYKTP---TDHFRDMGVSMVIWANHNL 242 (295)
T ss_dssp SS-------------------------SHHHHHHHHHHTTCSCEEECCSTTTTSC---HHHHHHHTCCEEEECSHHH
T ss_pred CC-------------------------HHHHHHHHHHcCCCCCEEEeCCCCCCCC---HHHHHHcCCcEEEEChHHH
Confidence 11 1456777777655599998733 333 6677789999999997765
No 442
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=92.73 E-value=0.63 Score=41.30 Aligned_cols=128 Identities=18% Similarity=0.093 Sum_probs=72.0
Q ss_pred HHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHH
Q psy5880 49 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKG 128 (328)
Q Consensus 49 ~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~ 128 (328)
++..+.+.|++..-.. |..+. ++ |++.++..|+++- + +.++-++.+.-.....+++|.+.
T Consensus 59 Le~ag~yID~lKfg~G---Ts~l~----~~-l~ekI~l~~~~gV--------~----v~~GGTlfE~~l~qg~~~~yl~~ 118 (276)
T 1u83_A 59 IAGASDYIDFVKFGWG---TSLLT----KD-LEEKISTLKEHDI--------T----FFFGGTLFEKYVSQKKVNEFHRY 118 (276)
T ss_dssp HHHHGGGCCEEEECTT---GGGGC----TT-HHHHHHHHHHTTC--------E----EEECHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhhhhcceEEecCc---chhhh----HH-HHHHHHHHHHcCC--------e----EeCCcHHHHHHHHcCcHHHHHHH
Confidence 4456677788765532 11121 22 8888888887762 2 22443333322233468999999
Q ss_pred HHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEe------C---CCCChhhHHHHH
Q psy5880 129 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKI------A---PDLSLDEKKDIA 199 (328)
Q Consensus 129 a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl------~---~~~~~~~~~~~a 199 (328)
++..+ +++|||+-++-..+ . .+.++.|+++. +. +.|+- . ...+.+++.+.+
T Consensus 119 ~k~lG--F~~IEISdGti~l~-------~---~~~~~lI~~a~-------~~-f~Vl~EvG~K~~~~~~~~~~~~~I~~~ 178 (276)
T 1u83_A 119 CTYFG--CEYIEISNGTLPMT-------N---KEKAAYIADFS-------DE-FLVLSEVGSKDAELASRQSSEEWLEYI 178 (276)
T ss_dssp HHHTT--CSEEEECCSSSCCC-------H---HHHHHHHHHHT-------TT-SEEEEECSCCC------CCSTHHHHHH
T ss_pred HHHcC--CCEEEECCCcccCC-------H---HHHHHHHHHHH-------hh-cEEeeeccccCccccCCCCHHHHHHHH
Confidence 99998 99999865532211 1 22233344442 12 23322 1 113445677888
Q ss_pred HHhccccCCccEEEEecCC
Q psy5880 200 DVVLDSKCKVDGLIVSNTT 218 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~ 218 (328)
+.. .++||+.|.+=++-
T Consensus 179 ~~d--LeAGA~~ViiEaRE 195 (276)
T 1u83_A 179 VED--MEAGAEKVITEARE 195 (276)
T ss_dssp HHH--HHHTEEEEEEC---
T ss_pred HHH--HHCCCcEEEEeeec
Confidence 888 89999999886543
No 443
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=92.69 E-value=1.3 Score=39.91 Aligned_cols=87 Identities=8% Similarity=0.116 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|++.++-+ . |....-..+.-.++++.+.+.. . .++||++=++...+ ++..++
T Consensus 23 ~~~l~~lv~~li~~G--v~gl~~~Gt--t--GE~~~Ls~~Er~~v~~~~~~~~---~--gr~pviaGvg~~~t-~~ai~l 90 (294)
T 3b4u_A 23 IDAMIAHARRCLSNG--CDSVTLFGT--T--GEGCSVGSRERQAILSSFIAAG---I--APSRIVTGVLVDSI-EDAADQ 90 (294)
T ss_dssp HHHHHHHHHHHHHTT--CSEEEESST--T--TTGGGSCHHHHHHHHHHHHHTT---C--CGGGEEEEECCSSH-HHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc--c--cChhhCCHHHHHHHHHHHHHHh---C--CCCcEEEeCCCccH-HHHHHH
Confidence 345566666555544 999987544 2 3222222344456666665542 1 46899998887544 467889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 91 a~~A--~~~Gadavlv~~P~y 109 (294)
T 3b4u_A 91 SAEA--LNAGARNILLAPPSY 109 (294)
T ss_dssp HHHH--HHTTCSEEEECCCCS
T ss_pred HHHH--HhcCCCEEEEcCCcC
Confidence 9999 999999998875543
No 444
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=92.68 E-value=0.19 Score=42.89 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=55.3
Q ss_pred ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCC
Q psy5880 191 SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFS 270 (328)
Q Consensus 191 ~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s 270 (328)
+..++.+.++.+ .++|+|.+++--- . |.+. .....+++.++++++.++ .|+..-+.|++
T Consensus 14 D~~~~~~~~~~~--~~~G~~~i~~~~~--d-------------g~~~--~~~~~g~~~i~~i~~~~~--~~~~v~l~v~d 72 (220)
T 2fli_A 14 DYANFASELARI--EETDAEYVHIDIM--D-------------GQFV--PNISFGADVVASMRKHSK--LVFDCHLMVVD 72 (220)
T ss_dssp CGGGHHHHHHHH--HHTTCCEEEEEEE--B-------------SSSS--SCBCBCHHHHHHHHTTCC--SEEEEEEESSS
T ss_pred CHHHHHHHHHHH--HHcCCCEEEEEee--c-------------CCCC--CccccCHHHHHHHHHhCC--CCEEEEEeecC
Confidence 445677788888 8999999765410 0 0000 011223577888888775 89999999999
Q ss_pred HH-HHHHHHHhccCeeeehhHH
Q psy5880 271 GK-DAFEKIKAGASLVQIYTSF 291 (328)
Q Consensus 271 ~~-da~~~l~~GAd~V~vg~a~ 291 (328)
++ .+..+.++|||.|+++..-
T Consensus 73 ~~~~i~~~~~~gad~v~vh~~~ 94 (220)
T 2fli_A 73 PERYVEAFAQAGADIMTIHTES 94 (220)
T ss_dssp GGGGHHHHHHHTCSEEEEEGGG
T ss_pred HHHHHHHHHHcCCCEEEEccCc
Confidence 86 4677778999999998664
No 445
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=92.50 E-value=1.6 Score=40.57 Aligned_cols=145 Identities=10% Similarity=0.083 Sum_probs=78.8
Q ss_pred hhHHHHHHHhHHHHHHHhhcC-ccceEEeccCC---------CCCc------CccCCCch-HHHHHHHHHHHHHhhhhcC
Q psy5880 34 FARMRAWVLQFWLLGILKFGD-VAHYFVVNVSS---------PNTA------NLRKLQAK-DQLKHLLKTVVETRNQLAL 96 (328)
Q Consensus 34 ~~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~ss---------pN~~------gl~~~~~~-~~L~~ll~~v~~~~~~~~~ 96 (328)
...+. .++++|.+.++.+.. -.|.|++|.++ |++- |- ++.+. .-+.+++++|++...
T Consensus 153 ~~eI~-~ii~~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGG-slenR~rf~~evv~aVr~~vg---- 226 (361)
T 3gka_A 153 LDEIP-GVVAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGG-SIENRARLLLEVVDAAIDVWS---- 226 (361)
T ss_dssp GGGHH-HHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSS-SHHHHSHHHHHHHHHHHHHHC----
T ss_pred HHHHH-HHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCC-ChhhcHHHHHHHHHHHHHHcC----
Confidence 45564 466889998886432 25889999876 6542 21 22222 234566666665542
Q ss_pred CCCCcchhcccCCccccccc--chhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhh
Q psy5880 97 KPLPPILVKIAPDLSLDEKK--DIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQL 174 (328)
Q Consensus 97 ~~~~Pv~vki~~~l~~~~n~--~~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~ 174 (328)
.. |+.+|+.+.-..+... ...+...++++.++.++ +|+|++... .. + + ++++.|++.
T Consensus 227 -~~-~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~G--vd~i~v~~~--~~-~------~----~~~~~ik~~---- 285 (361)
T 3gka_A 227 -AA-RVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRR--IAFLFARES--FG-G------D----AIGQQLKAA---- 285 (361)
T ss_dssp -GG-GEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTT--CSEEEEECC--CS-T------T----CCHHHHHHH----
T ss_pred -CC-eEEEecccccccCCCCCCCcHHHHHHHHHHHHHcC--CCEEEECCC--CC-C------H----HHHHHHHHH----
Confidence 13 8889988742111100 01233445555555554 999986433 21 1 1 345666666
Q ss_pred cCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 175 AVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 175 ~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.++||++= .+++. ....+.+ .+-++|+|.+.
T Consensus 286 ---~~iPvi~~--Ggit~---e~a~~~l--~~G~aD~V~iG 316 (361)
T 3gka_A 286 ---FGGPFIVN--ENFTL---DSAQAAL--DAGQADAVAWG 316 (361)
T ss_dssp ---HCSCEEEE--SSCCH---HHHHHHH--HTTSCSEEEES
T ss_pred ---cCCCEEEe--CCCCH---HHHHHHH--HcCCccEEEEC
Confidence 46798764 23353 3333444 34449988654
No 446
>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3
Probab=92.50 E-value=0.77 Score=39.33 Aligned_cols=42 Identities=19% Similarity=0.064 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCCccEEEecCCCCHH---H------HHHHHHhccCeeeehhHHhh
Q psy5880 248 LISEMYKLTKGKLPIIGVGGVFSGK---D------AFEKIKAGASLVQIYTSFVY 293 (328)
Q Consensus 248 ~v~~i~~~~~~~ipvia~GGI~s~~---d------a~~~l~~GAd~V~vg~a~l~ 293 (328)
.++++++.++ -+ +.++||+-.. | ..+ +++|||.+.+||++..
T Consensus 147 ~~~~ir~~~~--~~-~v~pGI~~~~~~~dq~rv~t~~~-i~aGad~iVvGR~I~~ 197 (213)
T 1vqt_A 147 WAKALREKIK--GK-ILVPGIRMEVKADDQKDVVTLEE-MKGIANFAVLGREIYL 197 (213)
T ss_dssp HHHHHTTTCC--SC-EEECCBC---------CCBCHHH-HTTTCSEEEESHHHHT
T ss_pred HHHHHHHHCC--CC-EEECCCCCCCCccchhhcCCHHH-HHCCCCEEEEChhhcC
Confidence 3566777766 46 8888986432 2 577 8999999999999974
No 447
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=92.45 E-value=1.9 Score=38.83 Aligned_cols=87 Identities=13% Similarity=0.089 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|+|.++-+ . |....-..+.-.++++.+.+... .++||++=++...+ ++..++
T Consensus 31 ~~~l~~lv~~li~~G--v~Gl~v~Gt--T--GE~~~Ls~eEr~~v~~~~~~~~~-----grvpViaGvg~~~t-~~ai~l 98 (303)
T 2wkj_A 31 KASLRRLVQFNIQQG--IDGLYVGGS--T--GEAFVQSLSEREQVLEIVAEEAK-----GKIKLIAHVGCVST-AESQQL 98 (303)
T ss_dssp HHHHHHHHHHHHHTT--CSEEEESST--T--TTGGGSCHHHHHHHHHHHHHHHT-----TTSEEEEECCCSSH-HHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECee--c--cChhhCCHHHHHHHHHHHHHHhC-----CCCcEEEecCCCCH-HHHHHH
Confidence 345555555555444 999987544 2 32222233444566666665532 47899998876544 467889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 99 a~~A--~~~Gadavlv~~P~y 117 (303)
T 2wkj_A 99 AASA--KRYGFDAVSAVTPFY 117 (303)
T ss_dssp HHHH--HHHTCSEEEEECCCS
T ss_pred HHHH--HhCCCCEEEecCCCC
Confidence 9999 899999998876554
No 448
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=92.38 E-value=0.79 Score=41.38 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|++-++-+ | |....-..+.-.++++.+.+... .++||++=++... .++..++
T Consensus 24 ~~~l~~lv~~li~~G--v~gl~v~Gt---t-GE~~~Ls~~Er~~v~~~~~~~~~-----grvpviaGvg~~~-t~~ai~l 91 (300)
T 3eb2_A 24 ADVMGRLCDDLIQAG--VHGLTPLGS---T-GEFAYLGTAQREAVVRATIEAAQ-----RRVPVVAGVASTS-VADAVAQ 91 (300)
T ss_dssp HHHHHHHHHHHHHTT--CSCBBTTSG---G-GTGGGCCHHHHHHHHHHHHHHHT-----TSSCBEEEEEESS-HHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc---c-cCccccCHHHHHHHHHHHHHHhC-----CCCcEEEeCCCCC-HHHHHHH
Confidence 345555555555444 888865433 1 32221223344556666665532 4789999776653 4567889
Q ss_pred HHHhccccCCccEEEEecCCc
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~ 219 (328)
++.+ +++|+|++.+....+
T Consensus 92 a~~a--~~~Gadavlv~~P~y 110 (300)
T 3eb2_A 92 AKLY--EKLGADGILAILEAY 110 (300)
T ss_dssp HHHH--HHHTCSEEEEEECCS
T ss_pred HHHH--HHcCCCEEEEcCCCC
Confidence 9999 999999998876544
No 449
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=92.36 E-value=0.88 Score=40.74 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=56.8
Q ss_pred CCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEec
Q psy5880 187 APDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVG 266 (328)
Q Consensus 187 ~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~G 266 (328)
...++.+.+.++++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++ -|+++|
T Consensus 13 dg~iD~~~l~~lv~~l--i~~Gv~gl~v~GttGE~~------------~Ls----~~Er~~v~~~~~~~~~g--vi~Gvg 72 (286)
T 2r91_A 13 GGRLDPELFANHVKNI--TSKGVDVVFVAGTTGLGP------------ALS----LQEKMELTDAATSAARR--VIVQVA 72 (286)
T ss_dssp TTEECHHHHHHHHHHH--HHTTCCEEEETSTTTTGG------------GSC----HHHHHHHHHHHHHHCSS--EEEECC
T ss_pred CCccCHHHHHHHHHHH--HHCCCCEEEECccccChh------------hCC----HHHHHHHHHHHHHHhCC--EEEeeC
Confidence 3446666788999999 899999999888765421 011 11234566667777764 445666
Q ss_pred CCCCHHHHHH---HHHhccCeeeehhHHhh
Q psy5880 267 GVFSGKDAFE---KIKAGASLVQIYTSFVY 293 (328)
Q Consensus 267 GI~s~~da~~---~l~~GAd~V~vg~a~l~ 293 (328)
+.++.+-+.. +-++|||+|++....++
T Consensus 73 ~~~t~~ai~la~~A~~~Gadavlv~~P~y~ 102 (286)
T 2r91_A 73 SLNADEAIALAKYAESRGAEAVASLPPYYF 102 (286)
T ss_dssp CSSHHHHHHHHHHHHHTTCSEEEECCSCSS
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEcCCcCC
Confidence 6555444332 23479999999998854
No 450
>3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae}
Probab=92.33 E-value=5.8 Score=37.75 Aligned_cols=122 Identities=12% Similarity=0.028 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhc-c-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 122 VLDSVKGILKFG-D-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 122 i~~~~~~a~~~~-~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
.+++++.++++. . ++..+-+.++... ++.-.+.+++||++. .+++|.+.-...++.++...++
T Consensus 192 ~e~~~~~a~~~~~~~Gf~~~KlKvG~~~---------~~~Di~~v~avRea~------~~~~L~vDaN~~w~~~~Ai~~~ 256 (445)
T 3va8_A 192 PEGVVKQAKKIIDEYGFKAIKLKGGVFP---------PADEVAAIKALHKAF------PGVPLRLDPNAAWTVETSKWVA 256 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEECSSSC---------HHHHHHHHHHHHHHS------TTCCEEEECTTCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEccCCCC---------HHHHHHHHHHHHHhC------CCCcEeeeCCCCCCHHHHHHHH
Confidence 445555554432 2 5888887765311 222345667777663 4789999998889988888999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+. +.+| ..| . + .++..+++++.++ +||.+.-.+.+..++.++++
T Consensus 257 ~~L--~~~-l~~i-------EeP------------------~-~-d~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~ 304 (445)
T 3va8_A 257 KEL--EGI-VEYL-------EDP------------------A-G-EIEGMAAVAKEAS--MPLATNMAVVAFDHLPPSIL 304 (445)
T ss_dssp HHT--TTT-CSEE-------ESC------------------B-S-HHHHHHHHHTTCS--SCEEESSSCCSGGGHHHHHH
T ss_pred HHH--hhh-cCeE-------eec------------------C-c-CHHHHHHHHHcCC--CCEEeCCccCCHHHHHHHHH
Confidence 998 666 6555 111 1 1 3566788888887 99999888999999999999
Q ss_pred hc-cCeeeehhH
Q psy5880 280 AG-ASLVQIYTS 290 (328)
Q Consensus 280 ~G-Ad~V~vg~a 290 (328)
.| +|.|++=-.
T Consensus 305 ~~a~div~~d~~ 316 (445)
T 3va8_A 305 QDAVQVILSDHH 316 (445)
T ss_dssp TTCCSEEEECHH
T ss_pred cCCCCEEEecch
Confidence 87 899887443
No 451
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=92.18 E-value=1.3 Score=41.49 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=65.0
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCcc---ch----hhhc-c-c--cc--------cc-cCCCC-
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVD---RY----EYLD-A-R--YK--------EE-TGGLS- 237 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~---~~----~~~~-~-~--~~--------~~-~gg~s- 237 (328)
+-|.++.+-... .+...++++.+ +++|+.++.++-.+.. +. .+.. | . .. .. ..+-+
T Consensus 123 ~~~~~fQly~~~-~~~~~~~i~~a--~~aG~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~a 199 (380)
T 1p4c_A 123 DGDLWFQLYVIH-REIAQGMVLKA--LHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEM 199 (380)
T ss_dssp CSCEEEEECCSS-HHHHHHHHHHH--HHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTT
T ss_pred CCCeEEEEEech-HHHHHHHHHHH--HHcCCCEEEEeecCccccchhHHHhcCCCCccccCHHHhhhhhhhccCcccchH
Confidence 458888875433 45567888888 8999998877433211 00 0010 1 0 00 00 00100
Q ss_pred -----CCc-CchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 238 -----GEP-LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 238 -----g~~-~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
+.. ..+..++.++.+++.++ +||+.- |+.+++++..+.++|||+|.++
T Consensus 200 la~~~~~~~~p~~~~~~i~~i~~~~~--~Pv~vk-gv~t~e~a~~a~~aGad~I~vs 253 (380)
T 1p4c_A 200 QAALMSRQMDASFNWEALRWLRDLWP--HKLLVK-GLLSAEDADRCIAEGADGVILS 253 (380)
T ss_dssp HHHHTSSCCCTTCCHHHHHHHHHHCC--SEEEEE-EECCHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHhhcCccccHHHHHHHHHhcC--CCEEEE-ecCcHHHHHHHHHcCCCEEEEc
Confidence 000 11234688999999987 998865 5899999999999999999994
No 452
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=92.17 E-value=2.1 Score=38.73 Aligned_cols=130 Identities=12% Similarity=0.132 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCC-hhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCC-CC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLS-LDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG-LS 237 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~-~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg-~s 237 (328)
+.+++..++..++... .++||++.+..++. .+++.+.++.+ +++|+.+|.+=..... ...| +.
T Consensus 71 ~~em~~~~~~i~r~~~--~~~PviaD~d~Gyg~~~~v~~~v~~l--~~aGaagv~iEDq~~~-----------k~cgh~~ 135 (307)
T 3lye_A 71 LHDMRDNADMIANLDP--FGPPLIADMDTGYGGPIMVARTVEHY--IRSGVAGAHLEDQILT-----------KRCGHLS 135 (307)
T ss_dssp HHHHHHHHHHHHTSST--TSCCEEEECTTCSSSHHHHHHHHHHH--HHTTCCEEEECCBCCC-----------C------
T ss_pred HHHHHHHHHhhhccCC--CCCcEEEECCCCCCCHHHHHHHHHHH--HHcCCeEEEEcCCCCC-----------cccCCCC
Confidence 4455555555433210 25899999988753 34566778888 8999999987654321 0122 23
Q ss_pred CCcCchHH--HHHHHHHHHH---cCCCccEEEecCCC---CHHH----HHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 238 GEPLRNKS--TELISEMYKL---TKGKLPIIGVGGVF---SGKD----AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 238 g~~~~~~~--l~~v~~i~~~---~~~~ipvia~GGI~---s~~d----a~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
|..+.|.. .+.|+..+++ .+.++-|++=-... ..++ +..+.++|||+|.+- ++ ..++.++++.+.
T Consensus 136 gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~-~~--~~~~~~~~i~~~ 212 (307)
T 3lye_A 136 GKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGYEECIERLRAARDEGADVGLLE-GF--RSKEQAAAAVAA 212 (307)
T ss_dssp --CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEEC-CC--SCHHHHHHHHHH
T ss_pred CCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhccCHHHHHHHHHHHHHCCCCEEEec-CC--CCHHHHHHHHHH
Confidence 44454443 2333333332 23235555533321 1223 334567999999875 32 357778888776
Q ss_pred HH
Q psy5880 306 LE 307 (328)
Q Consensus 306 l~ 307 (328)
+.
T Consensus 213 ~~ 214 (307)
T 3lye_A 213 LA 214 (307)
T ss_dssp HT
T ss_pred cc
Confidence 64
No 453
>3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941}
Probab=92.12 E-value=2.7 Score=38.94 Aligned_cols=123 Identities=8% Similarity=0.022 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+++++.++++.. ++..+-+.++. +.+.-.+.+++|+++. + .++.|.+.....++.++..++++.
T Consensus 146 ~~~~~~a~~~~~~G~~~~KiKvG~----------~~~~d~~~v~avr~a~---g--~~~~l~vDaN~~~~~~~a~~~~~~ 210 (372)
T 3cyj_A 146 RRLQEQLGGWAAAGIPRVKMKVGR----------EPEKDPERVRAAREAI---G--ESVELMVDANGAYTRKQALYWAGA 210 (372)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCS----------SGGGHHHHHHHHHHHH---C--TTSEEEEECTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCC----------CHHHHHHHHHHHHHHh---C--CCCeEEEECCCCCCHHHHHHHHHH
Confidence 344444444432 68888876542 2233456677777763 3 578999999888998888888998
Q ss_pred hccccC-CccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 202 VLDSKC-KVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 202 l~~~~~-G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
+ .+. ++.+|- . |+.+..++..+++++.++.++||.+-=.+.+..++.++ .-
T Consensus 211 l--~~~~~i~~iE-------q------------------P~~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~-~~ 262 (372)
T 3cyj_A 211 F--AREAGISYLE-------E------------------PVSSEDREGLRLLRDRGPGGVAIAAGEYEWTLPQLHDL-AG 262 (372)
T ss_dssp H--HHHHCCCEEE-------C------------------SSCTTCHHHHHHHHHHSCTTCEEEECTTCCSHHHHHHH-HT
T ss_pred H--HhhcCCcEEE-------C------------------CCCcccHHHHHHHHHhCCCCCCEECCCCccCHHHHHHH-hC
Confidence 8 777 766651 1 11122345566777776523698888888999998887 54
Q ss_pred ccCeeeeh
Q psy5880 281 GASLVQIY 288 (328)
Q Consensus 281 GAd~V~vg 288 (328)
.+|.|++=
T Consensus 263 a~d~i~ik 270 (372)
T 3cyj_A 263 CVDILQAD 270 (372)
T ss_dssp TCSEEEEC
T ss_pred CCCEEecC
Confidence 58888873
No 454
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=92.07 E-value=1.2 Score=44.60 Aligned_cols=158 Identities=8% Similarity=0.019 Sum_probs=79.2
Q ss_pred hHHHHHHHhHHHHHHHhhcC-ccceEEeccCC---------CCCcC-----ccCCC-chHHHHHHHHHHHHHhhhhcCCC
Q psy5880 35 ARMRAWVLQFWLLGILKFGD-VAHYFVVNVSS---------PNTAN-----LRKLQ-AKDQLKHLLKTVVETRNQLALKP 98 (328)
Q Consensus 35 ~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~ss---------pN~~g-----l~~~~-~~~~L~~ll~~v~~~~~~~~~~~ 98 (328)
..+. .++++|.+.++.+.. -.|.|++|.++ |++.- --++. ...-+.+++++|++.- + .
T Consensus 134 ~ei~-~~i~~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~v---G--~ 207 (671)
T 1ps9_A 134 EEIL-QLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERV---G--N 207 (671)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH---C--S
T ss_pred HHHH-HHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHc---C--C
Confidence 4443 456788888876433 25889998764 65421 01121 2223455555555543 2 3
Q ss_pred CCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCC--CCCcchhhhhhhHHHHHHHHHHHHHHHhhcC
Q psy5880 99 LPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSS--PNTANLRKLQAKDQLKHLLKTVVETRNQLAV 176 (328)
Q Consensus 99 ~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~sc--Pn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~ 176 (328)
..|+.+|+.+.-... ...+.+...++++.++.++ +|+|++.... |..+.......+....+.++.+++.
T Consensus 208 ~~~v~vrls~~~~~~-~g~~~~~~~~~a~~l~~~g--~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------ 278 (671)
T 1ps9_A 208 DFIIIYRLSMLDLVE-DGGTFAETVELAQAIEAAG--ATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGH------ 278 (671)
T ss_dssp SSEEEEEEEEECCST-TCCCHHHHHHHHHHHHHHT--CSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTS------
T ss_pred CceEEEEECccccCC-CCCCHHHHHHHHHHHHhcC--CCEEEcCCCccccccccccccCCcchHHHHHHHHHHh------
Confidence 468888887631100 0112334556666666665 9999875321 1111000000011223455555544
Q ss_pred CCCCCEEEEeCCCC-ChhhHHHHHHHhccccCCccEEEEe
Q psy5880 177 KPLPPILVKIAPDL-SLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 177 ~~~~Pv~vKl~~~~-~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.++||+. ..++ +. ..+.+.+ .+-++|+|.+.
T Consensus 279 -~~iPvi~--~Ggi~~~---~~a~~~l--~~g~aD~V~~g 310 (671)
T 1ps9_A 279 -VSLPLVT--TNRINDP---QVADDIL--SRGDADMVSMA 310 (671)
T ss_dssp -CSSCEEE--CSSCCSH---HHHHHHH--HTTSCSEEEES
T ss_pred -cCceEEE--eCCCCCH---HHHHHHH--HcCCCCEEEeC
Confidence 6889875 2333 42 3333444 33349998665
No 455
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=92.03 E-value=0.58 Score=45.64 Aligned_cols=104 Identities=25% Similarity=0.199 Sum_probs=65.8
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCc--c-chh----h-hccc--cc-------cccCCC----C
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTV--D-RYE----Y-LDAR--YK-------EETGGL----S 237 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~--~-~~~----~-~~~~--~~-------~~~gg~----s 237 (328)
..|.++.|-..-+.+...++++.+ +++|+++|.++-... + ++. . ..|. .. ...+|+ +
T Consensus 246 ~~~~~~QLy~~~d~~~~~~~~~ra--e~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~ 323 (511)
T 1kbi_A 246 KQIQWYQLYVNSDRKITDDLVKNV--EKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALS 323 (511)
T ss_dssp SCCEEEEECCCSSHHHHHHHHHHH--HHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCB
T ss_pred CCCeEEEEeecCCHHHHHHHHHHH--HHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHh
Confidence 468899886555556677888888 899999877653221 1 110 0 0110 00 000111 0
Q ss_pred CCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeee
Q psy5880 238 GEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287 (328)
Q Consensus 238 g~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~v 287 (328)
........++.++.+++.++ +||+.- |+.+.+++..+.++|||+|.|
T Consensus 324 ~~~d~~~~~~~i~~lr~~~~--~PvivK-gv~~~e~A~~a~~aGad~I~v 370 (511)
T 1kbi_A 324 KFIDPSLTWKDIEELKKKTK--LPIVIK-GVQRTEDVIKAAEIGVSGVVL 370 (511)
T ss_dssp TTBCTTCCHHHHHHHHHHCS--SCEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred hccChHhHHHHHHHHHHHhC--CcEEEE-eCCCHHHHHHHHHcCCCEEEE
Confidence 00011234677899999886 998876 567899999999999999999
No 456
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=92.01 E-value=6.7 Score=35.33 Aligned_cols=154 Identities=13% Similarity=0.132 Sum_probs=82.6
Q ss_pred CCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEc--cC---CCCCcchhhhhhhHHHHHHHHHHHHHHHh
Q psy5880 99 LPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVN--VS---SPNTANLRKLQAKDQLKHLLKTVVETRNQ 173 (328)
Q Consensus 99 ~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN--~s---cPn~~g~~~~~~~~~~~~i~~~v~~~~~~ 173 (328)
..|+.+-++-+- + ....+...++...+++ +.++.|- .. |.+..+.. .-..+...+-+++.+++++.
T Consensus 80 ~~PviaD~d~Gy--g----~~~~v~~tv~~l~~aG--aagv~iEDq~~~Krcgh~~gk~-l~~~~e~~~rI~Aa~~A~~~ 150 (302)
T 3fa4_A 80 STPVIADADTGY--G----GPIMVARTTEQYSRSG--VAAFHIEDQVQTKRCGHLAGKI-LVDTDTYVTRIRAAVQARQR 150 (302)
T ss_dssp TSCEEEECTTTT--S----SHHHHHHHHHHHHHTT--CCEEEECSBCCC-------CCC-BCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCC--C----CHHHHHHHHHHHHHcC--CcEEEECCCCCCcccCCCCCCe-ecCHHHHHHHHHHHHHHHHh
Confidence 467766655431 1 1233444445555554 7777663 21 22222211 11223344445555555443
Q ss_pred hcCCCCCCEEEEeCCC--CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHH
Q psy5880 174 LAVKPLPPILVKIAPD--LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISE 251 (328)
Q Consensus 174 ~~~~~~~Pv~vKl~~~--~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~ 251 (328)
.+ .++-|+.+.-.. ...++..+=++.. .++|+|+|-+.+-. +.+.+++
T Consensus 151 ~~--~d~~I~ARTDa~~~~gldeAi~Ra~ay--~eAGAD~ifi~g~~--------------------------~~~ei~~ 200 (302)
T 3fa4_A 151 IG--SDIVVIARTDSLQTHGYEESVARLRAA--RDAGADVGFLEGIT--------------------------SREMARQ 200 (302)
T ss_dssp HT--CCCEEEEEECCHHHHCHHHHHHHHHHH--HTTTCSEEEETTCC--------------------------CHHHHHH
T ss_pred cC--CCEEEEEEecccccCCHHHHHHHHHHH--HHcCCCEEeecCCC--------------------------CHHHHHH
Confidence 23 566777787543 2334556666777 89999999665421 1255777
Q ss_pred HHHHcCCCccEEEe---cCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 252 MYKLTKGKLPIIGV---GGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 252 i~~~~~~~ipvia~---GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
+.+.++ ..|+.++ +|-...-.+.++-+.|...|..+..++
T Consensus 201 ~~~~~~-~~Pl~~n~~~~g~~p~~~~~eL~~lGv~~v~~~~~~~ 243 (302)
T 3fa4_A 201 VIQDLA-GWPLLLNMVEHGATPSISAAEAKEMGFRIIIFPFAAL 243 (302)
T ss_dssp HHHHTT-TSCEEEECCTTSSSCCCCHHHHHHHTCSEEEETTTTH
T ss_pred HHHHhc-CCceeEEEecCCCCCCCCHHHHHHcCCCEEEEchHHH
Confidence 877774 2787653 332212235556678999999887665
No 457
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=91.97 E-value=0.98 Score=39.59 Aligned_cols=129 Identities=13% Similarity=0.041 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC---CChhhHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD---LSLDEKK 196 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~---~~~~~~~ 196 (328)
...+|+. +-++++.|++-+-+++ ......+.+.+.++..++ .++++..==+.. +....+.
T Consensus 26 ~~~~d~L---e~~g~yID~lKfg~Gt------~~l~~~~~l~eki~l~~~--------~gV~v~~GGTl~E~~~~qg~~~ 88 (251)
T 1qwg_A 26 KFVEDYL---KVCGDYIDFVKFGWGT------SAVIDRDVVKEKINYYKD--------WGIKVYPGGTLFEYAYSKGKFD 88 (251)
T ss_dssp HHHHHHH---HHHGGGCSEEEECTTG------GGGSCHHHHHHHHHHHHT--------TTCEEEECHHHHHHHHHTTCHH
T ss_pred HHHHHHH---HHhhhhcceEEecCce------eeecCHHHHHHHHHHHHH--------cCCeEECCcHHHHHHHHcCcHH
Confidence 3455554 4556778999865542 122234556666655443 355554311000 0112366
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH-----
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG----- 271 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~----- 271 (328)
+..+.+ .+.|++.|-+++.+...+ ...-+++|+++++. .+.++.-=|..++
T Consensus 89 ~yl~~~--k~lGf~~iEiS~G~i~l~-------------------~~~~~~~I~~~~~~---G~~v~~EvG~k~~~~~~~ 144 (251)
T 1qwg_A 89 EFLNEC--EKLGFEAVEISDGSSDIS-------------------LEERNNAIKRAKDN---GFMVLTEVGKKMPDKDKQ 144 (251)
T ss_dssp HHHHHH--HHHTCCEEEECCSSSCCC-------------------HHHHHHHHHHHHHT---TCEEEEEECCSSHHHHTT
T ss_pred HHHHHH--HHcCCCEEEECCCcccCC-------------------HHHHHHHHHHHHHC---CCEEeeeccccCCcccCC
Confidence 777888 889999999998765432 11225667776665 1445554455555
Q ss_pred ---H----HHHHHHHhccCeeeehh
Q psy5880 272 ---K----DAFEKIKAGASLVQIYT 289 (328)
Q Consensus 272 ---~----da~~~l~~GAd~V~vg~ 289 (328)
+ .+.+.|++||+.|++=.
T Consensus 145 ~~~~~~I~~~~~~LeAGA~~ViiEa 169 (251)
T 1qwg_A 145 LTIDDRIKLINFDLDAGADYVIIEG 169 (251)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEee
Confidence 3 35567789999999864
No 458
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=91.95 E-value=6.9 Score=35.34 Aligned_cols=154 Identities=12% Similarity=0.092 Sum_probs=80.6
Q ss_pred CcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEcc-CCCCCcchh---hhhhhHHHHHHHHHHHHHHHhhc
Q psy5880 100 PPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNV-SSPNTANLR---KLQAKDQLKHLLKTVVETRNQLA 175 (328)
Q Consensus 100 ~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~-scPn~~g~~---~~~~~~~~~~i~~~v~~~~~~~~ 175 (328)
.|+.+-++-+- + ....+...++...+++ +.++.|-= ..|...|+. ..-..+...+-+++.+++++..+
T Consensus 89 ~PviaD~d~Gy--g----~~~~v~~~v~~l~~aG--aagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~ 160 (307)
T 3lye_A 89 PPLIADMDTGY--G----GPIMVARTVEHYIRSG--VAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLR 160 (307)
T ss_dssp CCEEEECTTCS--S----SHHHHHHHHHHHHHTT--CCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTT
T ss_pred CcEEEECCCCC--C----CHHHHHHHHHHHHHcC--CeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcC
Confidence 57766555431 1 1233444455555555 77776521 112211211 11122344455555555554322
Q ss_pred CCCCCCEEEEeCCC--CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHH
Q psy5880 176 VKPLPPILVKIAPD--LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMY 253 (328)
Q Consensus 176 ~~~~~Pv~vKl~~~--~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~ 253 (328)
.++-|+.|.-.. ...++..+=++.. .++|+|.|.+.+.. +.+.++++.
T Consensus 161 --~d~~I~ARTDa~~~~gldeAi~Ra~ay--~eAGAD~ifi~~~~--------------------------~~~~~~~i~ 210 (307)
T 3lye_A 161 --SDFVLIARTDALQSLGYEECIERLRAA--RDEGADVGLLEGFR--------------------------SKEQAAAAV 210 (307)
T ss_dssp --CCCEEEEEECCHHHHCHHHHHHHHHHH--HHTTCSEEEECCCS--------------------------CHHHHHHHH
T ss_pred --CCeEEEEechhhhccCHHHHHHHHHHH--HHCCCCEEEecCCC--------------------------CHHHHHHHH
Confidence 456666676542 1234555566767 89999999765421 125567777
Q ss_pred HHcCCCccEEEe---cCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 254 KLTKGKLPIIGV---GGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 254 ~~~~~~ipvia~---GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
+.++ .+|+.++ ||-...-.+.++-+.|...|..+..++
T Consensus 211 ~~~~-~~Pv~~n~~~~g~~p~~t~~eL~~lGv~~v~~~~~~~ 251 (307)
T 3lye_A 211 AALA-PWPLLLNSVENGHSPLITVEEAKAMGFRIMIFSFATL 251 (307)
T ss_dssp HHHT-TSCBEEEEETTSSSCCCCHHHHHHHTCSEEEEETTTH
T ss_pred HHcc-CCceeEEeecCCCCCCCCHHHHHHcCCeEEEEChHHH
Confidence 7764 3777553 442211234566678999998776554
No 459
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=91.94 E-value=0.84 Score=41.06 Aligned_cols=83 Identities=24% Similarity=0.284 Sum_probs=54.0
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+.++++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+..++ -|+++|+.+
T Consensus 17 iD~~~l~~lv~~l--i~~Gv~gl~~~GttGE~~------------~Ls----~eEr~~v~~~~~~~~~g--viaGvg~~~ 76 (293)
T 1w3i_A 17 IDKEKLKIHAENL--IRKGIDKLFVNGTTGLGP------------SLS----PEEKLENLKAVYDVTNK--IIFQVGGLN 76 (293)
T ss_dssp BCHHHHHHHHHHH--HHTTCCEEEESSTTTTGG------------GSC----HHHHHHHHHHHHTTCSC--EEEECCCSC
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccChh------------hCC----HHHHHHHHHHHHHHcCC--EEEecCCCC
Confidence 4556688899999 899999999888765421 011 11224556666666654 345666655
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhh
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVY 293 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~ 293 (328)
+ +++.+.. ++|||+|++.+..++
T Consensus 77 t-~~ai~la~~A~~~Gadavlv~~P~y~ 103 (293)
T 1w3i_A 77 L-DDAIRLAKLSKDFDIVGIASYAPYYY 103 (293)
T ss_dssp H-HHHHHHHHHGGGSCCSEEEEECCCSC
T ss_pred H-HHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 4 4444433 379999999998854
No 460
>3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1}
Probab=91.92 E-value=3.7 Score=38.34 Aligned_cols=122 Identities=10% Similarity=0.060 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhc-ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHH
Q psy5880 122 VLDSVKGILKFG-DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIAD 200 (328)
Q Consensus 122 i~~~~~~a~~~~-~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~ 200 (328)
.+++++.++++. .++..+-+.++ |. .-.+.+++||++. .++.|.+.-...++.++... ++
T Consensus 150 ~e~~~~~~~~~~~~G~~~~K~Kv~-~~-----------~d~~~v~avR~~~------~~~~l~vDaN~~~~~~~A~~-~~ 210 (388)
T 3qld_A 150 LDVLIQSVDAAVEQGFRRVKLKIA-PG-----------RDRAAIKAVRLRY------PDLAIAADANGSYRPEDAPV-LR 210 (388)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECB-TT-----------BSHHHHHHHHHHC------TTSEEEEECTTCCCGGGHHH-HH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeC-cH-----------HHHHHHHHHHHHC------CCCeEEEECCCCCChHHHHH-HH
Confidence 455555555443 26888887764 21 1135666777662 46788888888888877665 68
Q ss_pred HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHh
Q psy5880 201 VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA 280 (328)
Q Consensus 201 ~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~ 280 (328)
.+ .+.++.+| .. |..+..++..+++++.++ +||.+-=.+.+..|+.++++.
T Consensus 211 ~l--~~~~i~~i-------Ee------------------P~~~~d~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~~~~ 261 (388)
T 3qld_A 211 QL--DAYDLQFI-------EQ------------------PLPEDDWFDLAKLQASLR--TPVCLDESVRSVRELKLTARL 261 (388)
T ss_dssp HG--GGGCCSCE-------EC------------------CSCTTCHHHHHHHHHHCS--SCEEESTTCCSHHHHHHHHHH
T ss_pred HH--hhCCCcEE-------EC------------------CCCcccHHHHHHHHHhCC--CCEEeCCCCCCHHHHHHHHHc
Confidence 78 77666555 11 112223466678888887 999998889999999999998
Q ss_pred c-cCeeeehhHH
Q psy5880 281 G-ASLVQIYTSF 291 (328)
Q Consensus 281 G-Ad~V~vg~a~ 291 (328)
| +|.|++=-.-
T Consensus 262 ~a~d~v~~k~~~ 273 (388)
T 3qld_A 262 GAARVLNVKPGR 273 (388)
T ss_dssp TCCSEEEECHHH
T ss_pred CCCCEEEECchh
Confidence 7 7999876544
No 461
>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*
Probab=91.88 E-value=5.2 Score=37.21 Aligned_cols=155 Identities=11% Similarity=0.025 Sum_probs=80.5
Q ss_pred cCChhhHHHHHHHhHHHHHHHhhc-C-ccceEEeccC---------CCCCcCcc-CC-------Cc-hHHHHHHHHHHHH
Q psy5880 30 MLSSFARMRAWVLQFWLLGILKFG-D-VAHYFVVNVS---------SPNTANLR-KL-------QA-KDQLKHLLKTVVE 89 (328)
Q Consensus 30 ~~~~~~~v~~~~l~~y~~~~~~l~-~-~~~~v~~n~s---------spN~~gl~-~~-------~~-~~~L~~ll~~v~~ 89 (328)
+......+...++++|.+.++.+. . -.|.|++|.. ||++ ..+ .+ .+ ..-+.+++++|++
T Consensus 161 r~lt~~eI~~~~i~~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~-N~R~~D~yGG~slenR~r~~~eiv~aVr~ 239 (379)
T 3aty_A 161 EELTDDEVRDGIIPLFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESS-NKRQSGPYAGTTIDTRCQLIYDVTKSVCD 239 (379)
T ss_dssp EECCHHHHHHTHHHHHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTT-CCCCSSTTCTTSHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCC-CccccCCCCccChhhhHHHHHHHHHHHHH
Confidence 333344554356789999888654 3 3588999876 4765 222 22 21 2234555666655
Q ss_pred HhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHH
Q psy5880 90 TRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVV 168 (328)
Q Consensus 90 ~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~ 168 (328)
.. + ..|+.+|+.+.-..... ......+++.+.++.+.+ ++|+|++.... ... . ..+. + ++.|+
T Consensus 240 av---g---~~~v~vRis~~~~~~~~-~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~--~~~-~--~~~~---~-~~~ir 303 (379)
T 3aty_A 240 AV---G---SDRVGLRISPLNGVHGM-IDSNPEALTKHLCKKIEPLSLAYLHYLRGD--MVN-Q--QIGD---V-VAWVR 303 (379)
T ss_dssp HH---C---GGGEEEEECTTCCGGGC-CCSCHHHHHHHHHHHHGGGCCSEEEEECSC--TTS-C--CCCC---H-HHHHH
T ss_pred hc---C---CCeEEEEECcccccccC-CCCCCHHHHHHHHHHHHHhCCCEEEEcCCC--cCC-C--CccH---H-HHHHH
Confidence 43 2 12788998874211100 001133444445554444 49999875421 100 0 0111 3 55555
Q ss_pred HHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 169 ETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 169 ~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
+. .++||++= .+++. .+..+.+ .+-++|+|.+.
T Consensus 304 ~~-------~~iPvi~~--G~it~---~~a~~~l--~~g~aD~V~ig 336 (379)
T 3aty_A 304 GS-------YSGVKISN--LRYDF---EEADQQI--REGKVDAVAFG 336 (379)
T ss_dssp TT-------CCSCEEEE--SSCCH---HHHHHHH--HTTSCSEEEES
T ss_pred HH-------CCCcEEEE--CCCCH---HHHHHHH--HcCCCeEEEec
Confidence 54 67898873 22343 3333444 44449988654
No 462
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=91.81 E-value=6.9 Score=35.05 Aligned_cols=180 Identities=13% Similarity=0.144 Sum_probs=94.1
Q ss_pred cCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccCC-CC
Q psy5880 69 ANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSS-PN 147 (328)
Q Consensus 69 ~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~sc-Pn 147 (328)
.|+++.. .-.+.+.+..++..... ...|+.+-++-+- + ....+...+....+++ +.++.|-=.. |.
T Consensus 50 ~G~pD~~-~vt~~em~~~~~~I~~~----~~~PviaD~d~Gy--g----~~~~~~~~v~~l~~aG--a~gv~iED~~~~k 116 (290)
T 2hjp_A 50 YAVPDAN-ILSMSTHLEMMRAIAST----VSIPLIADIDTGF--G----NAVNVHYVVPQYEAAG--ASAIVMEDKTFPK 116 (290)
T ss_dssp TTSCTTT-CSCHHHHHHHHHHHHTT----CSSCEEEECTTTT--S----SHHHHHHHHHHHHHHT--CSEEEEECBCSSC
T ss_pred CCCCCCC-CCCHHHHHHHHHHHHhc----CCCCEEEECCCCC--C----CHHHHHHHHHHHHHhC--CeEEEEcCCCCCc
Confidence 5655532 22345555554444321 2357665554331 1 2233444444444555 7776552111 22
Q ss_pred Ccchh-----hhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC---ChhhHHHHHHHhccccCCccEEEEecCCc
Q psy5880 148 TANLR-----KLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL---SLDEKKDIADVVLDSKCKVDGLIVSNTTV 219 (328)
Q Consensus 148 ~~g~~-----~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~---~~~~~~~~a~~l~~~~~G~d~i~~~n~~~ 219 (328)
..++. .+-..+...+-++++++++. ..++-|..|.-..+ ..++..+=++.+ .++|+|.|.+.+...
T Consensus 117 ~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~----~~~~~i~aRtda~~a~~g~~~ai~Ra~ay--~eAGAd~i~~e~~~~ 190 (290)
T 2hjp_A 117 DTSLRTDGRQELVRIEEFQGKIAAATAARA----DRDFVVIARVEALIAGLGQQEAVRRGQAY--EEAGADAILIHSRQK 190 (290)
T ss_dssp CC-------CCBCCHHHHHHHHHHHHHHCS----STTSEEEEEECTTTTTCCHHHHHHHHHHH--HHTTCSEEEECCCCS
T ss_pred cccccccCCCcccCHHHHHHHHHHHHHhcc----cCCcEEEEeehHhhccccHHHHHHHHHHH--HHcCCcEEEeCCCCC
Confidence 11211 11112233444444444421 13455666765432 245666667888 899999998765222
Q ss_pred cchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhHHh
Q psy5880 220 DRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFV 292 (328)
Q Consensus 220 ~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a~l 292 (328)
. .+.++++.+.++..+|++++-.-...-.+.++-+.| ...|.++..++
T Consensus 191 ~-------------------------~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG~v~~v~~~~~~~ 239 (290)
T 2hjp_A 191 T-------------------------PDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAI 239 (290)
T ss_dssp S-------------------------SHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTTEEEEEECSHHH
T ss_pred C-------------------------HHHHHHHHHHcCCCCCEEEeccCCCCCCHHHHHhcCCeeEEEechHHH
Confidence 1 145677888886669999752100112345666799 99999987765
No 463
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=91.79 E-value=1.1 Score=38.06 Aligned_cols=112 Identities=16% Similarity=0.194 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
..+.++.+...+ +|+|++....... +... + +.++++.+++.++. .++||++- + . ++.
T Consensus 33 ~~~~~~~~~~~G--~~~i~l~~~~~~~---~~~~-~--~~~~~~~l~~~~~~----~~v~v~v~-----~--~----~~~ 89 (227)
T 2tps_A 33 PVTVVQKALKGG--ATLYQFREKGGDA---LTGE-A--RIKFAEKAQAACRE----AGVPFIVN-----D--D----VEL 89 (227)
T ss_dssp HHHHHHHHHHHT--CSEEEECCCSTTC---CCHH-H--HHHHHHHHHHHHHH----HTCCEEEE-----S--C----HHH
T ss_pred HHHHHHHHHHCC--CCEEEEecCCCCH---hHHH-H--HHHHHHHHHHHHHH----cCCeEEEc-----C--H----HHH
Confidence 445555555555 9999865332111 1000 0 24455555544322 36789884 1 1 234
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+ .++|+|++++.... . + +.++++..+ ..+++. .++|++++.++...|
T Consensus 90 a--~~~gad~v~l~~~~--------------------~---~-----~~~~~~~~g--~~~~~~-s~~t~~e~~~a~~~g 136 (227)
T 2tps_A 90 A--LNLKADGIHIGQED--------------------A---N-----AKEVRAAIG--DMILGV-SAHTMSEVKQAEEDG 136 (227)
T ss_dssp H--HHHTCSEEEECTTS--------------------S---C-----HHHHHHHHT--TSEEEE-EECSHHHHHHHHHHT
T ss_pred H--HHcCCCEEEECCCc--------------------c---C-----HHHHHHhcC--CcEEEE-ecCCHHHHHHHHhCC
Confidence 5 67799999873210 0 0 234444443 223332 257999998888999
Q ss_pred cCeeeehh
Q psy5880 282 ASLVQIYT 289 (328)
Q Consensus 282 Ad~V~vg~ 289 (328)
+|.|.++.
T Consensus 137 ~d~v~~~~ 144 (227)
T 2tps_A 137 ADYVGLGP 144 (227)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 99999743
No 464
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=91.73 E-value=0.58 Score=41.32 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGE 239 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~ 239 (328)
+.+++..++..++. .+.||++.+..++.... .+-++.+ .++|+++|.+=+... ..|.
T Consensus 65 ~~em~~~~~~I~r~----~~~pviaD~~~Gyg~~~-~~~~~~l--~~aGa~gv~iEd~~~----------------~~~k 121 (255)
T 2qiw_A 65 FADYMAVVKKITSA----VSIPVSVDVESGYGLSP-ADLIAQI--LEAGAVGINVEDVVH----------------SEGK 121 (255)
T ss_dssp HHHHHHHHHHHHHH----CSSCEEEECTTCTTCCH-HHHHHHH--HHTTCCEEEECSEEG----------------GGTT
T ss_pred HHHHHHHHHHHHhc----CCCCEEeccCCCcCcHH-HHHHHHH--HHcCCcEEEECCCCC----------------CCCC
Confidence 44444444444333 67999999988764322 6667778 789999998754321 0111
Q ss_pred cCch--HHHHHHHHHHHHcCC-Ccc--EEEecCC-----C----CHH----HHHHHHHhccCeeeehhHHhhcCchHHHH
Q psy5880 240 PLRN--KSTELISEMYKLTKG-KLP--IIGVGGV-----F----SGK----DAFEKIKAGASLVQIYTSFVYHGPPLVTR 301 (328)
Q Consensus 240 ~~~~--~~l~~v~~i~~~~~~-~ip--via~GGI-----~----s~~----da~~~l~~GAd~V~vg~a~l~~gp~~~~~ 301 (328)
.+.+ ...+.|+.++++-.. .+| |++=.+. . ..+ ++..+.++|||+|.+=. + ..++.+++
T Consensus 122 ~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~e~-~--~~~~~~~~ 198 (255)
T 2qiw_A 122 RVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEAIKRIKLMEQAGARSVYPVG-L--STAEQVER 198 (255)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHHHHHHHHHHTCSEEEECC-C--CSHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHHHHHHHHHHHHcCCcEEEEcC-C--CCHHHHHH
Confidence 1111 223445555444110 267 5543332 0 123 34456679999998732 2 23456666
Q ss_pred HHHHH
Q psy5880 302 IKSEL 306 (328)
Q Consensus 302 i~~~l 306 (328)
+.+.+
T Consensus 199 i~~~~ 203 (255)
T 2qiw_A 199 LVDAV 203 (255)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 65543
No 465
>2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A
Probab=91.68 E-value=1.8 Score=41.00 Aligned_cols=99 Identities=8% Similarity=-0.015 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGE 239 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~ 239 (328)
-.+.+++|+++ ++ .++.|.+.....++.++..++++.+ .+.++.+|- .
T Consensus 208 d~~~v~avrea---~G--~~~~L~vDaN~~~~~~~Ai~~~~~l--~~~~i~~iE-------q------------------ 255 (415)
T 2p3z_A 208 DAAMVADMREK---CG--PDFWLMLDCWMSQDVNYATKLAHAC--APFNLKWIE-------E------------------ 255 (415)
T ss_dssp HHHHHHHHHHH---HC--SSSEEEEECTTCCCHHHHHHHHHHH--GGGTCCEEE-------C------------------
T ss_pred HHHHHHHHHHH---hC--CCCEEEEECCCCCCHHHHHHHHHHH--hhcCCceEe-------C------------------
Confidence 34556666655 44 5788999988888888888899998 777766651 1
Q ss_pred cCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhH
Q psy5880 240 PLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 240 ~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a 290 (328)
|+.+..++..+++++.++..+||.+-=-+.+..++.++++.|+|.|++=-.
T Consensus 256 Pl~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~i~~~~d~i~ik~~ 306 (415)
T 2p3z_A 256 CLPPQQYEGYRELKRNAPAGMMVTSGEHHGTLQSFRTLAETGIDIMQPDVG 306 (415)
T ss_dssp CSCTTCHHHHHHHHHHSCTTCEEEECTTCCSHHHHHHHHHTTCSEECCCHH
T ss_pred CCCcchHHHHHHHHHhcCCCCcEEcCCCCCCHHHHHHHHHcCCCEEEeCcc
Confidence 111223455677777765337888877889999999999988999987433
No 466
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=91.68 E-value=2.5 Score=38.45 Aligned_cols=127 Identities=7% Similarity=0.021 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHhhcCCC-CCCEEEEeCCCC-ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCC-C
Q psy5880 160 LKHLLKTVVETRNQLAVKP-LPPILVKIAPDL-SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG-L 236 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~-~~Pv~vKl~~~~-~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg-~ 236 (328)
+.+++..++..++. . +.||++.+..++ +.++..+.++.+ +++|+.+|.+=..... ...| +
T Consensus 85 ~~em~~~~~~I~r~----~~~~PviaD~d~Gyg~~~~v~~tv~~l--~~aGaagv~iED~~~~-----------k~cgH~ 147 (318)
T 1zlp_A 85 TTEVVEATRRITAA----APNLCVVVDGDTGGGGPLNVQRFIREL--ISAGAKGVFLEDQVWP-----------KKCGHM 147 (318)
T ss_dssp HHHHHHHHHHHHHH----SSSSEEEEECTTCSSSHHHHHHHHHHH--HHTTCCEEEEECBCSS-----------CCCSSS
T ss_pred HHHHHHHHHHHHhh----ccCCCEEEeCCCCCCCHHHHHHHHHHH--HHcCCcEEEECCCCCC-----------ccccCC
Confidence 44444444444333 4 899999998775 445677788888 8899999988654321 0122 3
Q ss_pred CCCcCchHH--HHHHHHHHHHc-CCCccEEEecCCC-------CHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHHH
Q psy5880 237 SGEPLRNKS--TELISEMYKLT-KGKLPIIGVGGVF-------SGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306 (328)
Q Consensus 237 sg~~~~~~~--l~~v~~i~~~~-~~~ipvia~GGI~-------s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~l 306 (328)
.|..+.|.. .+.|+.++++. .+++-|++=..-. ..+++..+.++|||+|.+=. + ..++.++++.+.+
T Consensus 148 ~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~-~--~~~e~~~~i~~~l 224 (318)
T 1zlp_A 148 RGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGIRRANLYKEAGADATFVEA-P--ANVDELKEVSAKT 224 (318)
T ss_dssp SCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECC-C--CSHHHHHHHHHHS
T ss_pred CCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHHHHHHHHHHcCCCEEEEcC-C--CCHHHHHHHHHhc
Confidence 345555543 33455555443 2235555533221 12244456678999998743 2 2356666666554
No 467
>3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A
Probab=91.66 E-value=1 Score=43.12 Aligned_cols=120 Identities=10% Similarity=0.010 Sum_probs=76.8
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
++..+-+.+......|. ...+.-.+.+++||++ ++ .+++|++.....++.++..++++.+ .+.++.+|-
T Consensus 180 Gf~~~KlKv~~~~~~G~---~~~~~di~rv~avRea---~G--~d~~L~vDaN~~wt~~~Ai~~~~~L--e~~~l~~iE- 248 (455)
T 3fxg_A 180 GFWGGKVPLPFCPDDGH---EGLRKNVEFLRKHREA---VG--PDFPIMVDCYMSLNVSYTIELVKAC--LDLNINWWE- 248 (455)
T ss_dssp TCSCEEEECCCCGGGHH---HHHHHHHHHHHHHHHH---HC--SSSCEEEECTTCCCHHHHHHHHHHT--GGGCCSEEE-
T ss_pred CCCEEEEcCCCCccccc---ccHHHHHHHHHHHHHH---hC--CCCeEEEeCCCCCCHHHHHHHHHhc--ccCCcceec-
Confidence 37777766532110011 1123344555566555 45 6889999998889988888999999 888776661
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeehhH
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTS 290 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg~a 290 (328)
. |+.+..++..+++++.++ .+||.+.=-+.+..++.++++.| +|.|++=-.
T Consensus 249 ------E------------------Pl~~dd~~~la~L~~~~~-~iPIA~gEs~~s~~d~~~li~~~avDiiq~d~~ 300 (455)
T 3fxg_A 249 ------E------------------CLSPDDTDGFALIKRAHP-TVKFTTGEHEYSRYGFRKLVEGRNLDIIQPDVM 300 (455)
T ss_dssp ------C------------------CSCGGGGGGHHHHHHHCT-TSEEEECTTCCHHHHHHHHHTTCCCSEECCCTT
T ss_pred ------C------------------CCCcchHHHHHHHHHhCC-CCeEECCCccCCHHHHHHHHHcCCCCEEEECcc
Confidence 1 112223345567777653 26776666788999999999876 888876433
No 468
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=91.63 E-value=2 Score=37.10 Aligned_cols=134 Identities=18% Similarity=0.254 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEE--EEeCCC--CChhhHHHH
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPIL--VKIAPD--LSLDEKKDI 198 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~--vKl~~~--~~~~~~~~~ 198 (328)
.+..+.+++.+ .|++.+|-. +.+ +.++.+++. .++|++ ++++.. ...++...+
T Consensus 82 ~ei~~~i~~~~--ld~vQLHG~----------E~~----~~~~~l~~~-------~~~~viKa~~v~~~~~~~~~~~~~~ 138 (228)
T 4aaj_A 82 SEWAMAIERTG--AQYIQVHSN----------ALP----QTIDTLKKE-------FGVFVMKAFRVPTISKNPEEDANRL 138 (228)
T ss_dssp HHHHHHHHHHT--CSEEEECSC----------CCH----HHHHHHHHH-------HCCEEEEEEECCSSCSCHHHHHHHH
T ss_pred HHHHHHHHhcc--chheecccc----------cCH----HHHHHHhhc-------cCceEEEEEEecccccchhhhHHHH
Confidence 34555666666 899987643 112 334444443 356765 333322 122334444
Q ss_pred HHHhccccCCccEEEEecCCccchhhhccccccccCCCCCC-cCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHH
Q psy5880 199 ADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGE-PLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEK 277 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~-~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~ 277 (328)
...+ ....+|++.+-.. || +|. ..| +.++.+.. +.|++..||+ +++.+.++
T Consensus 139 ~~~~--~~~~~d~~LlDs~----------------GG-tG~~fDW----~~~~~~~~----~~p~iLAGGL-~peNV~~A 190 (228)
T 4aaj_A 139 LSEI--SRYNADMVLLDTG----------------AG-SGKLHDL----RVSSLVAR----KIPVIVAGGL-NAENVEEV 190 (228)
T ss_dssp HHHH--HHSCCSEEEEEC------------------------CCC----HHHHHHHH----HSCEEEESSC-CTTTHHHH
T ss_pred HHHH--hccCCCEEccCCC----------------CC-CcCcCCh----HHHHHhhh----cCCeEEECCC-CHHHHHHH
Confidence 4555 5567888755321 22 222 122 34444433 2799999999 68888888
Q ss_pred HH-hccCeeeehhHHhh---cCchHHHHHHHHHH
Q psy5880 278 IK-AGASLVQIYTSFVY---HGPPLVTRIKSELE 307 (328)
Q Consensus 278 l~-~GAd~V~vg~a~l~---~gp~~~~~i~~~l~ 307 (328)
++ .+..+|=|.|++-. +++..++++.+..+
T Consensus 191 i~~~~P~gVDVsSGVEs~G~KD~~KI~~Fi~~vr 224 (228)
T 4aaj_A 191 IKVVKPYGVDVSSGVEKYGIKDPKLVEEFVRRAK 224 (228)
T ss_dssp HHHHCCSEEEESGGGEETTEECHHHHHHHHHHHH
T ss_pred HHHhCCCEEEeCCCCCCCCCcCHHHHHHHHHHHh
Confidence 87 78999999998842 24455555554443
No 469
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=91.62 E-value=3 Score=41.08 Aligned_cols=135 Identities=7% Similarity=-0.025 Sum_probs=82.5
Q ss_pred HHHHhHHHHHHHhh-cCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccc
Q psy5880 39 AWVLQFWLLGILKF-GDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKD 117 (328)
Q Consensus 39 ~~~l~~y~~~~~~l-~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~ 117 (328)
+.+.+.|.+.++.+ ...+|++-+. ...+....+..+.++++... ..|+++....+ .-+ ...
T Consensus 122 ~e~~~~~~~qi~~l~~~gvD~l~~E----------T~~~~~Ea~aa~~a~~~~~~------~~Pv~vS~t~~-~~g-~~~ 183 (566)
T 1q7z_A 122 EEFYENFRETVEIMVEEGVDGIIFE----------TFSDILELKAAVLAAREVSR------DVFLIAHMTFD-EKG-RSL 183 (566)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEE----------EECCHHHHHHHHHHHHHHCS------SSCEEEEECCC-TTS-CCT
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe----------ccCCHHHHHHHHHHHHHhCC------CCcEEEEEEEc-CCC-eeC
Confidence 34456787777755 4557887655 12245556666666665421 36887765432 111 112
Q ss_pred hhHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC-------
Q psy5880 118 IADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL------- 190 (328)
Q Consensus 118 ~~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~------- 190 (328)
+.+.+.+++..+...+ ++++=+|+++ .|+.+..+++.+++. .+.|+++.=..+.
T Consensus 184 ~G~~~~~~~~~l~~~~--~~avG~NC~~----------gp~~~~~~l~~l~~~-------~~~p~~vyPNaG~p~~~~~~ 244 (566)
T 1q7z_A 184 TGTDPANFAITFDELD--IDALGINCSL----------GPEEILPIFQELSQY-------TDKFLVVEPNAGKPIVENGK 244 (566)
T ss_dssp TSCCHHHHHHHHHTSS--CSEEEEESSS----------CHHHHHHHHHHHHHT-------CCSEEEEECCSSSCEEETTE
T ss_pred CCCcHHHHHHHhhccC--CCEEEEeCCC----------CHHHHHHHHHHHHhc-------CCCEEEEEcCCCCCcccCCc
Confidence 3456788888777765 8999988873 234466666666654 5789988854322
Q ss_pred -----ChhhHHHHHHHhccccCCccEE
Q psy5880 191 -----SLDEKKDIADVVLDSKCKVDGL 212 (328)
Q Consensus 191 -----~~~~~~~~a~~l~~~~~G~d~i 212 (328)
+.+++.+.++.+ .+.|+..|
T Consensus 245 ~~~~~~p~~~a~~~~~~--~~~G~~ii 269 (566)
T 1q7z_A 245 TVYPLKPHDFAVHIDSY--YELGVNIF 269 (566)
T ss_dssp EECCCCHHHHHTTHHHH--HHTTCSEE
T ss_pred cccCCCHHHHHHHHHHH--HHcCCcEE
Confidence 345566677777 78887765
No 470
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=91.62 E-value=2 Score=38.30 Aligned_cols=87 Identities=7% Similarity=-0.060 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcccccEEEEccCCCCC-cchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC--CChhhHHHHH
Q psy5880 123 LDSVKGILKFGDVAHYFVVNVSSPNT-ANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD--LSLDEKKDIA 199 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN~scPn~-~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~--~~~~~~~~~a 199 (328)
.-.++.+++++ +|.|-+--|--+. -|..+ ..+-.+.+++..++.+++.. .+.||++.+..+ .+.++..+-+
T Consensus 39 a~sA~l~e~aG--~d~ilvGdSl~~~~lG~~d-t~~vtldem~~h~~aV~r~~---~~~~vvaD~pfgsY~s~~~a~~~a 112 (275)
T 3vav_A 39 ASFAALLDRAN--VDVQLIGDSLGNVLQGQTT-TLPVTLDDIAYHTACVARAQ---PRALIVADLPFGTYGTPADAFASA 112 (275)
T ss_dssp HHHHHHHHHTT--CSEEEECTTHHHHTTCCSS-STTCCHHHHHHHHHHHHHTC---CSSEEEEECCTTSCSSHHHHHHHH
T ss_pred HHHHHHHHHcC--CCEEEECcHHHHHHcCCCC-CCccCHHHHHHHHHHHHhcC---CCCCEEEecCCCCCCCHHHHHHHH
Confidence 34556667776 8988432110000 01110 01223455555555554331 257999999863 3545656656
Q ss_pred HHhccccCCccEEEEecC
Q psy5880 200 DVVLDSKCKVDGLIVSNT 217 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~ 217 (328)
..+ .++|+++|.+=+.
T Consensus 113 ~rl--~kaGa~aVklEdg 128 (275)
T 3vav_A 113 VKL--MRAGAQMVKFEGG 128 (275)
T ss_dssp HHH--HHTTCSEEEEECC
T ss_pred HHH--HHcCCCEEEECCc
Confidence 667 6789999987653
No 471
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=91.50 E-value=0.94 Score=39.63 Aligned_cols=85 Identities=9% Similarity=0.090 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCC
Q psy5880 159 QLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG 238 (328)
Q Consensus 159 ~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg 238 (328)
...+..+.+++.++. .++|++|- + -.++ + .+.|+|+|++......
T Consensus 80 ~~~~~a~~l~~l~~~----~~~~liIn-----d---~~~l---A--~~~gAdGVHLg~~dl~------------------ 124 (243)
T 3o63_A 80 DELAACEILADAAHR----YGALFAVN-----D---RADI---A--RAAGADVLHLGQRDLP------------------ 124 (243)
T ss_dssp HHHHHHHHHHHHHHH----TTCEEEEE-----S---CHHH---H--HHHTCSEEEECTTSSC------------------
T ss_pred HHHHHHHHHHHHHHh----hCCEEEEe-----C---HHHH---H--HHhCCCEEEecCCcCC------------------
Confidence 345555666666543 57899884 1 1234 3 4568999988753211
Q ss_pred CcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehhH
Q psy5880 239 EPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTS 290 (328)
Q Consensus 239 ~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~a 290 (328)
...+++..+.+ .+++. .++|.+++.++.+.|||.|.+|.-
T Consensus 125 ----------~~~~r~~~~~~-~~iG~-S~ht~~Ea~~A~~~GaDyI~vgpv 164 (243)
T 3o63_A 125 ----------VNVARQILAPD-TLIGR-STHDPDQVAAAAAGDADYFCVGPC 164 (243)
T ss_dssp ----------HHHHHHHSCTT-CEEEE-EECSHHHHHHHHHSSCSEEEECCS
T ss_pred ----------HHHHHHhhCCC-CEEEE-eCCCHHHHHHHhhCCCCEEEEcCc
Confidence 23344444322 23433 479999999999999999999863
No 472
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=91.45 E-value=2.3 Score=38.53 Aligned_cols=87 Identities=8% Similarity=0.057 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+....+++-....+ .|++-++-+ . |....-..+.-.++++.+.+.. . .++||++=++... .++..++
T Consensus 27 ~~~l~~lv~~li~~G--v~Gl~v~Gt--T--GE~~~Ls~~Er~~v~~~~~~~~---~--grvpViaGvg~~~-t~~ai~l 94 (311)
T 3h5d_A 27 FDAIPALIEHLLAHH--TDGILLAGT--T--AESPTLTHDEELELFAAVQKVV---N--GRVPLIAGVGTND-TRDSIEF 94 (311)
T ss_dssp TTHHHHHHHHHHHTT--CCCEEESST--T--TTGGGSCHHHHHHHHHHHHHHS---C--SSSCEEEECCCSS-HHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEECcc--c--cChhhCCHHHHHHHHHHHHHHh---C--CCCcEEEeCCCcC-HHHHHHH
Confidence 345666666655555 999987554 2 3222222344456666666552 1 4789999876654 4568889
Q ss_pred HHHhccccCCc-cEEEEecCCc
Q psy5880 199 ADVVLDSKCKV-DGLIVSNTTV 219 (328)
Q Consensus 199 a~~l~~~~~G~-d~i~~~n~~~ 219 (328)
++.+ +++|+ |++.+....+
T Consensus 95 a~~A--~~~Ga~davlv~~P~y 114 (311)
T 3h5d_A 95 VKEV--AEFGGFAAGLAIVPYY 114 (311)
T ss_dssp HHHH--HHSCCCSEEEEECCCS
T ss_pred HHHH--HhcCCCcEEEEcCCCC
Confidence 9999 89997 9998876544
No 473
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Probab=91.42 E-value=2.1 Score=40.95 Aligned_cols=200 Identities=15% Similarity=0.121 Sum_probs=102.0
Q ss_pred HHHHhHHHHHHHhhcCccceEEeccCCCCCcCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccch
Q psy5880 39 AWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDI 118 (328)
Q Consensus 39 ~~~l~~y~~~~~~l~~~~~~v~~n~sspN~~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~ 118 (328)
+.+.++-...++++.+++.++.++...-.. ..++.++.|-+.+...+ ...|++. |+-.+. .
T Consensus 29 ~~~~~~a~~~v~~~~~~v~~~Kvg~~lf~~------~G~~~v~~L~~~~~~~~------~g~~Vfl----DlK~~D---I 89 (453)
T 3qw4_B 29 AAAVEECKRLIEQTHEYAAAYKPNAAFFEF------FGAEGWAALSEVIRAVP------AGIPVVL----DAKRGD---I 89 (453)
T ss_dssp HHHHHHHHHHHHHHGGGCSEEEEBHHHHHT------THHHHHHHHHHHHHTSC------TTSCBEE----EEEECC---C
T ss_pred cHHHHHHHHHHHHhCCcCcEEEEcHHHHHh------cCHHHHHHHHHHHHhhc------CCCeEEE----EeecCC---h
Confidence 344556667777888888888877411111 12333333222211110 0134443 332222 2
Q ss_pred hHHHHHHHHHHHH-hcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC----CCh-
Q psy5880 119 ADVVLDSVKGILK-FGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD----LSL- 192 (328)
Q Consensus 119 ~~~i~~~~~~a~~-~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~----~~~- 192 (328)
......+++++-. ++ +|++++|-+. |.. .++...+. .+ ..+-|.++++.. +..
T Consensus 90 pnT~~~~a~~~~~~lg--~d~vTvh~~~----G~~----------~l~~~~~~---~~--~~v~vL~~tS~~~~~~lq~~ 148 (453)
T 3qw4_B 90 ADTADAYATSAFKHLN--AHAITASPYM----GSD----------SLQPFMRY---PD--KAVFVLCKTSNKGSNDLQCL 148 (453)
T ss_dssp HHHHHHHHHHHHTTSC--CSEEEECSTT----CHH----------HHHHHHTC---TT--SEEEEEEECSSGGGGGTTTS
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEcccC----CHH----------HHHHHHHh---hC--CcEEEEEeCCCcchHHHHhc
Confidence 3456666666543 55 9999986541 221 11111111 01 123455566532 110
Q ss_pred --------hhHHHHHH-HhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEE
Q psy5880 193 --------DEKKDIAD-VVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPII 263 (328)
Q Consensus 193 --------~~~~~~a~-~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvi 263 (328)
+.+.+.++ .+ .++|.+|++++.|.. +.++.+|+.++. .+++
T Consensus 149 ~~~~~~~~~~V~~~a~~~~--~~~g~~GvV~gat~~---------------------------~e~~~ir~~~~~-~~~l 198 (453)
T 3qw4_B 149 RVGDRYLYEAVAERAEGPW--NVNGNVGLVVGATDP---------------------------VALARVRARAPT-LWFL 198 (453)
T ss_dssp EETTEEHHHHHHHHHTTTT--CTTSCEEEEECTTCH---------------------------HHHHHHHHHCSS-CCEE
T ss_pred ccCCCCHHHHHHHHHHHHH--hhcCCeEEEECCCCH---------------------------HHHHHHHHhCCC-CeEE
Confidence 23333444 33 468999998876432 235677777753 4554
Q ss_pred EecCCC-CHHHHHHHHHhccCe------eeehhHHhhc-Cc-hHHHHHHHHHHHH
Q psy5880 264 GVGGVF-SGKDAFEKIKAGASL------VQIYTSFVYH-GP-PLVTRIKSELEEL 309 (328)
Q Consensus 264 a~GGI~-s~~da~~~l~~GAd~------V~vg~a~l~~-gp-~~~~~i~~~l~~~ 309 (328)
+=||. .+.+..+++++|+|. +.+||+++.. +| ..++++.++++..
T Consensus 199 -~PGig~qg~tp~~a~~~g~d~~~~~~livvgR~I~~A~dp~~aa~~i~~~i~~~ 252 (453)
T 3qw4_B 199 -VPGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAADPRAAAKELCEEINAI 252 (453)
T ss_dssp -ECCSSTTCCCHHHHHHHHCCTTSCCEEEEESHHHHSCSCHHHHHHHHHHHHHHH
T ss_pred -ECCcCCCCCCHHHHHHhcCCcccCCceEecChhhccCCCHHHHHHHHHHHHHHH
Confidence 33332 122455666788887 8999999743 44 3466666666554
No 474
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=91.31 E-value=6.9 Score=35.31 Aligned_cols=84 Identities=6% Similarity=0.034 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHH
Q psy5880 119 ADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDI 198 (328)
Q Consensus 119 ~~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~ 198 (328)
.+.+..+++-....+ +|+|-++-+ . |....-..+.-.++++.+.+.. .++||++=++.. +.++..++
T Consensus 28 ~~~l~~lv~~li~~G--v~Gl~v~Gt--T--GE~~~Lt~~Er~~v~~~~v~~~------grvpViaGvg~~-~t~~ai~l 94 (313)
T 3dz1_A 28 DVSIDRLTDFYAEVG--CEGVTVLGI--L--GEAPKLDAAEAEAVATRFIKRA------KSMQVIVGVSAP-GFAAMRRL 94 (313)
T ss_dssp HHHHHHHHHHHHHTT--CSEEEESTG--G--GTGGGSCHHHHHHHHHHHHHHC------TTSEEEEECCCS-SHHHHHHH
T ss_pred HHHHHHHHHHHHHCC--CCEEEeCcc--C--cChhhCCHHHHHHHHHHHHHHc------CCCcEEEecCCC-CHHHHHHH
Confidence 345566665555544 999986544 1 3222222344456666665552 368999977654 44567889
Q ss_pred HHHhccccCCccEEEEecC
Q psy5880 199 ADVVLDSKCKVDGLIVSNT 217 (328)
Q Consensus 199 a~~l~~~~~G~d~i~~~n~ 217 (328)
++.+ +++|+|++.+...
T Consensus 95 a~~A--~~~Gadavlv~~P 111 (313)
T 3dz1_A 95 ARLS--MDAGAAGVMIAPP 111 (313)
T ss_dssp HHHH--HHHTCSEEEECCC
T ss_pred HHHH--HHcCCCEEEECCC
Confidence 9999 9999999987644
No 475
>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A
Probab=91.30 E-value=10 Score=36.25 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=76.1
Q ss_pred cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEE
Q psy5880 135 VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIV 214 (328)
Q Consensus 135 ~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~ 214 (328)
+++.+-+.++.+. ++.-.+.+++|+++ + .+++|++-....++.++..++++.+ +.. ..++
T Consensus 218 Gf~~~KlKvG~~~---------~~~di~~v~avrea---~---pd~~L~vDaN~~wt~~~Ai~~~~~l--e~~-l~wi-- 277 (464)
T 4g8t_A 218 GFNDFKLKGGVLD---------GFEEAEAVTALAKR---F---PDARITLDPNGAWSLDEAVKIGKQL--KGV-LAYA-- 277 (464)
T ss_dssp CCSCEEEECSSSC---------HHHHHHHHHHHHHH---S---TTCCEEEECTTCBCHHHHHHHHHHT--TTT-CSCE--
T ss_pred CCCeEEEeCCCCC---------HHHHHHHHHHHHhh---C---CCceEEEECCCccCHHHHHHHHHHh--hhc-ccee--
Confidence 4888887665321 22234556666665 3 4688999988889988888898888 543 4333
Q ss_pred ecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc-cCeeeeh
Q psy5880 215 SNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIY 288 (328)
Q Consensus 215 ~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G-Ad~V~vg 288 (328)
..| +. +.......+..+++++.++ +||.+.=.+.+..++.++++.| +|.++.=
T Consensus 278 -----EeP-------------~~-~~d~~~~~e~~a~lr~~~~--iPIa~gE~~~~~~~~~~~i~~~avdi~~~d 331 (464)
T 4g8t_A 278 -----EDP-------------CG-AEQGYSGREIMAEFRRATG--LPTATNMIATDWRQMGHTISLQSVDIPLAD 331 (464)
T ss_dssp -----ESC-------------BC-CBTTBCHHHHHHHHHHHHC--CCEEESSSSCSHHHHHHHHHHTCCSEEBCC
T ss_pred -----ecC-------------cC-cccccchHHHHHhhhccCC--CCccccccccchhhHHHHHHhhCCCEEecc
Confidence 111 00 0000112466788898887 9999988999999999999988 6766654
No 476
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=91.20 E-value=5.1 Score=35.84 Aligned_cols=177 Identities=12% Similarity=0.136 Sum_probs=94.9
Q ss_pred cCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEccC-CCC
Q psy5880 69 ANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVS-SPN 147 (328)
Q Consensus 69 ~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN~s-cPn 147 (328)
.|+++.. .-.+.+.+..++..... ...|+.+-++-+- + ....+...+....+++ +.++.|-=. .|.
T Consensus 57 lG~pD~~-~vt~~em~~~~~~I~r~----~~~PviaD~d~Gy--g----~~~~~~~~v~~l~~aG--a~gv~iED~~~pK 123 (287)
T 3b8i_A 57 LAAPDFA-LITLSEFVEQATRIGRV----ARLPVIADADHGY--G----NALNVMRTVVELERAG--IAALTIEDTLLPA 123 (287)
T ss_dssp HSCCSSS-CSCHHHHHHHHHHHHTT----CSSCEEEECTTCS--S----SHHHHHHHHHHHHHHT--CSEEEEECBCCSC
T ss_pred cCCCCCC-CCCHHHHHHHHHHHHhc----CCCCEEEECCCCC--C----CHHHHHHHHHHHHHhC--CeEEEEcCCCCcc
Confidence 4655532 22345555554444321 2357665554331 1 1233444444444555 777765311 132
Q ss_pred Ccchhh--hhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC-CChhhHHHHHHHhccccCCccEEEEecCCccchhh
Q psy5880 148 TANLRK--LQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD-LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEY 224 (328)
Q Consensus 148 ~~g~~~--~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~-~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~ 224 (328)
..|+.. .-..+...+-+++++++.. ..++-|..|.-.. ...++..+=++.+ .++|+|.|.+.+. .
T Consensus 124 rcgh~~gkl~~~~e~~~~I~aa~~a~~----~~~~~i~aRtdaa~~gl~~ai~Ra~ay--~eAGAd~i~~e~~-~----- 191 (287)
T 3b8i_A 124 QFGRKSTDLICVEEGVGKIRAALEARV----DPALTIIARTNAELIDVDAVIQRTLAY--QEAGADGICLVGV-R----- 191 (287)
T ss_dssp CTTTCTTCBCCHHHHHHHHHHHHHHCC----STTSEEEEEEETTTSCHHHHHHHHHHH--HHTTCSEEEEECC-C-----
T ss_pred ccCCCCCCccCHHHHHHHHHHHHHcCC----CCCcEEEEechhhhcCHHHHHHHHHHH--HHcCCCEEEecCC-C-----
Confidence 212111 2223445555555555421 1345566675441 1224566667788 8999999987652 1
Q ss_pred hccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEe-cCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 225 LDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGV-GGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 225 ~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~-GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
..+.++++.+.++ +|++.+ ||-...-...++-+.|...|..+..++
T Consensus 192 --------------------~~~~~~~i~~~~~--~P~ii~~~g~~~~~~~~eL~~lGv~~v~~~~~~~ 238 (287)
T 3b8i_A 192 --------------------DFAHLEAIAEHLH--IPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAY 238 (287)
T ss_dssp --------------------SHHHHHHHHTTCC--SCEEEECTTCGGGCCHHHHHHTTEEEEECCCHHH
T ss_pred --------------------CHHHHHHHHHhCC--CCEEEeCCCCCCCCCHHHHHHcCCcEEEEChHHH
Confidence 1356788888887 898833 333323345666779999999887665
No 477
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=91.17 E-value=0.94 Score=40.60 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=52.9
Q ss_pred CChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCC
Q psy5880 190 LSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVF 269 (328)
Q Consensus 190 ~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~ 269 (328)
++.+.+..+++.+ .+.|+++|.+.+++...+ .++ ...-.+.++.+.+.+++ -|+++|+.+
T Consensus 17 iD~~~l~~lv~~l--i~~Gv~gl~v~GtTGE~~------------~Ls----~eEr~~v~~~~~~~~~g--ViaGvg~~~ 76 (288)
T 2nuw_A 17 VNVDALKTHAKNL--LEKGIDAIFVNGTTGLGP------------ALS----KDEKRQNLNALYDVTHK--LIFQVGSLN 76 (288)
T ss_dssp BCHHHHHHHHHHH--HHTTCCEEEETSTTTTGG------------GSC----HHHHHHHHHHHTTTCSC--EEEECCCSC
T ss_pred cCHHHHHHHHHHH--HHcCCCEEEECccccChh------------hCC----HHHHHHHHHHHHHHhCC--eEEeeCCCC
Confidence 4556688899999 899999999888765421 011 11223555555555553 345666655
Q ss_pred CHHHHHHHH----HhccCeeeehhHHhh
Q psy5880 270 SGKDAFEKI----KAGASLVQIYTSFVY 293 (328)
Q Consensus 270 s~~da~~~l----~~GAd~V~vg~a~l~ 293 (328)
+. ++.+.. ++|||+|++-...++
T Consensus 77 t~-~ai~la~~A~~~Gadavlv~~P~y~ 103 (288)
T 2nuw_A 77 LN-DVMELVKFSNEMDILGVSSHSPYYF 103 (288)
T ss_dssp HH-HHHHHHHHHHTSCCSEEEECCCCSS
T ss_pred HH-HHHHHHHHHHhcCCCEEEEcCCcCC
Confidence 44 444333 379999999998854
No 478
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=91.12 E-value=0.87 Score=40.09 Aligned_cols=111 Identities=12% Similarity=0.133 Sum_probs=66.1
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHH-HHHHHHHHHc
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKST-ELISEMYKLT 256 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l-~~v~~i~~~~ 256 (328)
+++||+.|=-. .+ ..++.. + ..+|+|+|.+..+... +..+ +++...++ +
T Consensus 100 v~lPvLrKDfi-~~---~~qi~e-a--~~~GAD~ilLi~a~l~----------------------~~~l~~l~~~a~~-l 149 (251)
T 1i4n_A 100 TCRPILAKDFY-ID---TVQVKL-A--SSVGADAILIIARILT----------------------AEQIKEIYEAAEE-L 149 (251)
T ss_dssp CCSCEEEECCC-CS---THHHHH-H--HHTTCSEEEEEGGGSC----------------------HHHHHHHHHHHHT-T
T ss_pred CCCCEEEeeCC-CC---HHHHHH-H--HHcCCCEEEEecccCC----------------------HHHHHHHHHHHHH-c
Confidence 68999988522 22 224444 5 7899999988765322 1122 23333333 4
Q ss_pred CCCccEEEecCCCCHHHHHHHHHh-ccCeeeehh-HHhh--cCchHHHHHHHHHHH---HHHHhCCCCHHHHh
Q psy5880 257 KGKLPIIGVGGVFSGKDAFEKIKA-GASLVQIYT-SFVY--HGPPLVTRIKSELEE---LLQKEGYNSVSQAV 322 (328)
Q Consensus 257 ~~~ipvia~GGI~s~~da~~~l~~-GAd~V~vg~-a~l~--~gp~~~~~i~~~l~~---~m~~~g~~si~e~~ 322 (328)
+ +.+++ -++|.+++..++.+ |++.|++-. .+-. -+.....++...+.. .+.+-|++|-+|++
T Consensus 150 G--l~~lv--Ev~~~eE~~~A~~l~g~~iIGinnr~l~t~~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~ 218 (251)
T 1i4n_A 150 G--MDSLV--EVHSREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELK 218 (251)
T ss_dssp T--CEEEE--EECSHHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHH
T ss_pred C--CeEEE--EeCCHHHHHHHHhcCCCCEEEEeCcccccCCCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHH
Confidence 4 65555 57899999999999 999998863 2211 123344455443311 34466777776664
No 479
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=91.11 E-value=1.1 Score=45.55 Aligned_cols=154 Identities=12% Similarity=0.014 Sum_probs=79.2
Q ss_pred HHHhHHHHHHHhhcC-ccceEEeccCC---------CCCc------CccCCCc-hHHHHHHHHHHHHHhhhhcCCCCCcc
Q psy5880 40 WVLQFWLLGILKFGD-VAHYFVVNVSS---------PNTA------NLRKLQA-KDQLKHLLKTVVETRNQLALKPLPPI 102 (328)
Q Consensus 40 ~~l~~y~~~~~~l~~-~~~~v~~n~ss---------pN~~------gl~~~~~-~~~L~~ll~~v~~~~~~~~~~~~~Pv 102 (328)
.++++|.+.++.+.. -.|.|++|.++ |++- |. ++.+ ..-+.+++++|++.-. ...|+
T Consensus 146 ~~i~~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGG-s~enR~r~~~eiv~avr~~vg-----~~~pv 219 (729)
T 1o94_A 146 QVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGG-SLENRARFWLETLEKVKHAVG-----SDCAI 219 (729)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSS-SHHHHTHHHHHHHHHHHHHHT-----TTSEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCC-CHHHHhHHHHHHHHHHHHHhC-----CCceE
Confidence 466889888886532 25889999877 5431 21 2222 2335666677666542 34689
Q ss_pred hhcccCCcccccccch-hHHHHHHHHHHHHhcccccEEEEccCCCC-Ccc--hhhh-hhhHHHHHHHHHHHHHHHhhcCC
Q psy5880 103 LVKIAPDLSLDEKKDI-ADVVLDSVKGILKFGDVAHYFVVNVSSPN-TAN--LRKL-QAKDQLKHLLKTVVETRNQLAVK 177 (328)
Q Consensus 103 ~vki~~~l~~~~n~~~-~~~i~~~~~~a~~~~~~~d~ieiN~scPn-~~g--~~~~-~~~~~~~~i~~~v~~~~~~~~~~ 177 (328)
.+|+.++=.......+ .++..++++.++. ++|++.++...-. ... .... ..+....++++.|++.
T Consensus 220 ~vrls~~~~~~~~G~~~~~~~~~~~~~l~~---~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------- 289 (729)
T 1o94_A 220 ATRFGVDTVYGPGQIEAEVDGQKFVEMADS---LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQV------- 289 (729)
T ss_dssp EEEEEEECSSCTTSCCTTTHHHHHHHHHGG---GCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTT-------
T ss_pred EEEEccccCcCCCCCCchHHHHHHHHHHHh---hcCEEEEeeecccccccccCCccccCccccHHHHHHHHHH-------
Confidence 9999763111000011 2234445555443 4899888654210 000 0000 0111124556666654
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.++||+. ..++.. .....+.+ .+-++|+|.+.
T Consensus 290 ~~~pvi~--~G~i~~--~~~a~~~l--~~g~aD~V~~g 321 (729)
T 1o94_A 290 SKKPVLG--VGRYTD--PEKMIEIV--TKGYADIIGCA 321 (729)
T ss_dssp CSSCEEC--CSCCCC--HHHHHHHH--HTTSCSBEEES
T ss_pred CCCEEEE--eCCCCC--HHHHHHHH--HCCCCCEEEeC
Confidence 6889874 233321 23333444 44449988654
No 480
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=91.06 E-value=1.9 Score=38.27 Aligned_cols=126 Identities=15% Similarity=0.142 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCC---CChhhHH
Q psy5880 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPD---LSLDEKK 196 (328)
Q Consensus 120 ~~i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~---~~~~~~~ 196 (328)
...+|+. +-++++.|++-+-+++- .-+++ +.+.++..++ .++++..==+.. +....+.
T Consensus 53 ~~~~DlL---e~ag~yID~lKfg~GTs-------~l~~~-l~ekI~l~~~--------~gV~v~~GGTlfE~~l~qg~~~ 113 (276)
T 1u83_A 53 QFFKDAI---AGASDYIDFVKFGWGTS-------LLTKD-LEEKISTLKE--------HDITFFFGGTLFEKYVSQKKVN 113 (276)
T ss_dssp HHHHHHH---HHHGGGCCEEEECTTGG-------GGCTT-HHHHHHHHHH--------TTCEEEECHHHHHHHHHTTCHH
T ss_pred HHHHHHH---HHhhhhcceEEecCcch-------hhhHH-HHHHHHHHHH--------cCCeEeCCcHHHHHHHHcCcHH
Confidence 3455554 45567789998655531 11233 6666665544 356654311000 1112467
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCH-----
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSG----- 271 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~----- 271 (328)
+..+.+ .+.|++.|-+++.+...+ ...-+++|+++++. +.|+.-=|..++
T Consensus 114 ~yl~~~--k~lGF~~IEISdGti~l~-------------------~~~~~~lI~~a~~~----f~Vl~EvG~K~~~~~~~ 168 (276)
T 1u83_A 114 EFHRYC--TYFGCEYIEISNGTLPMT-------------------NKEKAAYIADFSDE----FLVLSEVGSKDAELASR 168 (276)
T ss_dssp HHHHHH--HHTTCSEEEECCSSSCCC-------------------HHHHHHHHHHHTTT----SEEEEECSCCC------
T ss_pred HHHHHH--HHcCCCEEEECCCcccCC-------------------HHHHHHHHHHHHhh----cEEeeeccccCccccCC
Confidence 788888 899999999998765432 01123444443332 556665566665
Q ss_pred -------HHHHHHHHhccCeeeehh
Q psy5880 272 -------KDAFEKIKAGASLVQIYT 289 (328)
Q Consensus 272 -------~da~~~l~~GAd~V~vg~ 289 (328)
+.+.+.|++||+.|++=.
T Consensus 169 ~~~~~~I~~~~~dLeAGA~~ViiEa 193 (276)
T 1u83_A 169 QSSEEWLEYIVEDMEAGAEKVITEA 193 (276)
T ss_dssp CCSTHHHHHHHHHHHHTEEEEEEC-
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEee
Confidence 346678889999999865
No 481
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=91.01 E-value=1.4 Score=41.10 Aligned_cols=154 Identities=8% Similarity=0.010 Sum_probs=77.0
Q ss_pred hHHHHHHHhHHHHHHHhhcC-ccceEEeccCC---------CCCcC-----ccCCC-chHHHHHHHHHHHHHhhhhcCCC
Q psy5880 35 ARMRAWVLQFWLLGILKFGD-VAHYFVVNVSS---------PNTAN-----LRKLQ-AKDQLKHLLKTVVETRNQLALKP 98 (328)
Q Consensus 35 ~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~ss---------pN~~g-----l~~~~-~~~~L~~ll~~v~~~~~~~~~~~ 98 (328)
..+. .++++|.+.++.+.. -.|.|++|.++ |++.- --++. ...-+.+++++|++.- + .
T Consensus 160 ~eI~-~~i~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~av---g--~ 233 (376)
T 1icp_A 160 DEIP-QIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEI---G--S 233 (376)
T ss_dssp TTHH-HHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH---C--G
T ss_pred HHHH-HHHHHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHh---c--C
Confidence 3443 466789888876433 25889999764 65421 01121 1222455555555543 2 1
Q ss_pred CCcchhcccCCcccccccchhHHHHHHHHHHHHhcc-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCC
Q psy5880 99 LPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGD-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVK 177 (328)
Q Consensus 99 ~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~ 177 (328)
. |+.+|+.+.-...... .....+++.+.++.+.+ ++|+|++....-.. ......+ .+.++.|++.
T Consensus 234 ~-~V~vrls~~~~~~g~~-~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~-~~~~~~~----~~~~~~vr~~------- 299 (376)
T 1icp_A 234 D-RVGIRISPFAHYNEAG-DTNPTALGLYMVESLNKYDLAYCHVVEPRMKT-AWEKIEC----TESLVPMRKA------- 299 (376)
T ss_dssp G-GEEEEECTTCCTTTCC-CSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC-------C----CCCSHHHHHH-------
T ss_pred C-ceEEEeccccccCCCC-CCCCHHHHHHHHHHHHHcCCCEEEEcCCcccC-CCCcccc----HHHHHHHHHH-------
Confidence 3 8889987642211000 11233444445555444 49999875321000 0000001 1334556655
Q ss_pred CCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 178 ~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.++||++= .+++. .++.+.+ .+-++|+|.+.
T Consensus 300 ~~iPvi~~--G~i~~---~~a~~~l--~~g~aD~V~~g 330 (376)
T 1icp_A 300 YKGTFIVA--GGYDR---EDGNRAL--IEDRADLVAYG 330 (376)
T ss_dssp CCSCEEEE--SSCCH---HHHHHHH--HTTSCSEEEES
T ss_pred cCCCEEEe--CCCCH---HHHHHHH--HCCCCcEEeec
Confidence 67898863 33443 3344445 44459988654
No 482
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=90.94 E-value=3.1 Score=37.51 Aligned_cols=128 Identities=13% Similarity=0.176 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC-ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCC-CC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDL-SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG-LS 237 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~-~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg-~s 237 (328)
+.+++..++..++.. .++||++.+..++ +.+++...++.+ +++|+.+|.+=...... ..| ..
T Consensus 64 ~~em~~~~~~I~~~~---~~~PviaD~d~Gyg~~~~v~~tv~~l--~~aGaagv~iEDq~~~K-----------rcgh~~ 127 (302)
T 3fa4_A 64 LNDMRANAEMISNIS---PSTPVIADADTGYGGPIMVARTTEQY--SRSGVAAFHIEDQVQTK-----------RCGHLA 127 (302)
T ss_dssp HHHHHHHHHHHHTTS---TTSCEEEECTTTTSSHHHHHHHHHHH--HHTTCCEEEECSBCCC------------------
T ss_pred HHHHHHHHHHHHhhc---cCCCEEEECCCCCCCHHHHHHHHHHH--HHcCCcEEEECCCCCCc-----------ccCCCC
Confidence 445555554443211 3799999998875 334566778888 89999999876543210 122 23
Q ss_pred CCcCchHH--HHHHHHHHHH---cCCCccEEEecCCC---CHHHHHH----HHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 238 GEPLRNKS--TELISEMYKL---TKGKLPIIGVGGVF---SGKDAFE----KIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 238 g~~~~~~~--l~~v~~i~~~---~~~~ipvia~GGI~---s~~da~~----~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
|..+.+.. .+.|+..+++ .+.++-|++=-... ..+++.+ +.++|||+|.+-. + .+++-++++.+.
T Consensus 128 gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g-~--~~~~ei~~~~~~ 204 (302)
T 3fa4_A 128 GKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYEESVARLRAARDAGADVGFLEG-I--TSREMARQVIQD 204 (302)
T ss_dssp CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCHHHHHHHHHHHHTTTCSEEEETT-C--CCHHHHHHHHHH
T ss_pred CCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCHHHHHHHHHHHHHcCCCEEeecC-C--CCHHHHHHHHHH
Confidence 44444432 3333333332 23235555533322 2344443 5568999998754 2 357777777776
Q ss_pred H
Q psy5880 306 L 306 (328)
Q Consensus 306 l 306 (328)
+
T Consensus 205 ~ 205 (302)
T 3fa4_A 205 L 205 (302)
T ss_dssp T
T ss_pred h
Confidence 5
No 483
>3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A
Probab=90.89 E-value=3.4 Score=39.42 Aligned_cols=126 Identities=10% Similarity=-0.020 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhc--ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 122 VLDSVKGILKFG--DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 122 i~~~~~~a~~~~--~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
.+++++.++++. .++..+-+.++.+. ++.-.+.+++||++ + .+++|++.-...++.++...++
T Consensus 183 ~e~~~~~a~~~~~~~Gf~~~KlKvG~~~---------~~~Di~~v~avRea---~---pd~~L~vDaN~~w~~~~A~~~~ 247 (450)
T 3mzn_A 183 PEAVANLARAAYDRYGFKDFKLKGGVLR---------GEEEADCIRALHEA---F---PEARLALDPNGAWKLDEAVRVL 247 (450)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECSSSC---------HHHHHHHHHHHHHH---C---TTSEEEEECTTCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCCC---------HHHHHHHHHHHHHh---C---CCCeEEEECCCCCCHHHHHHHH
Confidence 445555555432 25888888766321 12234566677765 2 4788999988889988888888
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+. +.+| ..| +. +......++..+++++.++ +||.+.=-+.+..++.++++
T Consensus 248 ~~L--~~~-i~~i-------EeP-------------~~-~~d~~~~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~ 301 (450)
T 3mzn_A 248 EPI--KHL-LSYA-------EDP-------------CG-QEGGFSGRETMAEFKKRTG--LPTATNMIATDYKQLQYAVQ 301 (450)
T ss_dssp GGG--GGG-CSEE-------ESS-------------BC-CBTTBCHHHHHHHHHHHHC--CCEEESSSSSSHHHHHHHHH
T ss_pred HHh--hhc-ccee-------eCC-------------CC-cccccchHHHHHHHHHhcC--CCEEeCCccCCHHHHHHHHH
Confidence 888 554 4433 111 00 0000001356678888887 99888556788999999999
Q ss_pred hc-cCeeeeh
Q psy5880 280 AG-ASLVQIY 288 (328)
Q Consensus 280 ~G-Ad~V~vg 288 (328)
.| +|.+++=
T Consensus 302 ~~a~di~~~d 311 (450)
T 3mzn_A 302 LNSVDIPLAD 311 (450)
T ss_dssp HTCCSEEBCC
T ss_pred cCCCCEEEec
Confidence 87 7887753
No 484
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=90.86 E-value=2.8 Score=39.72 Aligned_cols=166 Identities=10% Similarity=0.050 Sum_probs=82.1
Q ss_pred ChhhHHHHHHHhHHHHHHHhhcC-ccceEEeccCC---------CCCcCccCCC-------ch-HHHHHHHHHHHHHhhh
Q psy5880 32 SSFARMRAWVLQFWLLGILKFGD-VAHYFVVNVSS---------PNTANLRKLQ-------AK-DQLKHLLKTVVETRNQ 93 (328)
Q Consensus 32 ~~~~~v~~~~l~~y~~~~~~l~~-~~~~v~~n~ss---------pN~~gl~~~~-------~~-~~L~~ll~~v~~~~~~ 93 (328)
.....+. .++++|...++.... -.|.|++|..+ |++ ..|+++ +. .-+.+++++|++.-.+
T Consensus 160 mt~~eI~-~ii~~F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~-N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~ 237 (419)
T 3l5a_A 160 MSHEKIN-SIIQQYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFS-NRRTDHYGADSLKNRARLCLEVMRAVQEVIDK 237 (419)
T ss_dssp CCHHHHH-HHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTT-CCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHHHHHHHHHHcCCCEEEECCccchHHHHccCCcc-cccccCCCCchhhhhhHHHHHHHHHHHHHHhh
Confidence 3345564 467889988885432 24889999764 755 233332 22 2245566666655321
Q ss_pred hcCCCCCcchhcccCCccccc-ccchhHHHHHHHHHHHH-hcccccEEEEccCCCCCcchhh-hhhhHHHHHHHHHHHHH
Q psy5880 94 LALKPLPPILVKIAPDLSLDE-KKDIADVVLDSVKGILK-FGDVAHYFVVNVSSPNTANLRK-LQAKDQLKHLLKTVVET 170 (328)
Q Consensus 94 ~~~~~~~Pv~vki~~~l~~~~-n~~~~~~i~~~~~~a~~-~~~~~d~ieiN~scPn~~g~~~-~~~~~~~~~i~~~v~~~ 170 (328)
- .+...|+.+|+.++=.... ...+.++..++++.++. ++ +|+|.+....-....... ...+..-.++++.|++.
T Consensus 238 ~-~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~G--vd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~ 314 (419)
T 3l5a_A 238 E-APDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSN--IQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEH 314 (419)
T ss_dssp H-CCTTCEEEEEECSCEEETTEEEECHHHHHHHHHHHHHHSC--CCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHH
T ss_pred h-cCCCeeEEEecccccccCCCCCCCHHHHHHHHHHHHhhcC--CcEEEEeeCCccccccccCCCCccccHHHHHHHHHH
Confidence 1 0124589999987421110 01123445566666666 55 999986533110000000 00000112345566665
Q ss_pred HHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEe
Q psy5880 171 RNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVS 215 (328)
Q Consensus 171 ~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~ 215 (328)
.. .++||++= .++.. ...+.+.+ +. +|+|.+.
T Consensus 315 v~-----~~iPVI~~--GgI~t--~e~Ae~~L---~~-aDlVaiG 346 (419)
T 3l5a_A 315 LA-----GRIPLIAS--GGINS--PESALDAL---QH-ADMVGMS 346 (419)
T ss_dssp HT-----TSSCEEEC--SSCCS--HHHHHHHG---GG-CSEEEES
T ss_pred cC-----CCCeEEEE--CCCCC--HHHHHHHH---Hh-CCcHHHH
Confidence 31 26898752 33321 23333444 44 9988554
No 485
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=90.82 E-value=0.97 Score=40.28 Aligned_cols=79 Identities=9% Similarity=-0.012 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcccccEEEEc-------cCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCC-CCEEEEeCCC---CC
Q psy5880 123 LDSVKGILKFGDVAHYFVVN-------VSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPL-PPILVKIAPD---LS 191 (328)
Q Consensus 123 ~~~~~~a~~~~~~~d~ieiN-------~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~-~Pv~vKl~~~---~~ 191 (328)
.-+++.+++++ +|.|-+- ++.|.+ .+-.+.+++..++.+++. .+ .||++.++.+ .+
T Consensus 27 a~sA~l~e~aG--~d~ilvGdSl~~~~lG~~dt-------~~vTldemi~h~~aV~r~----~~~~~vvaD~pfgsy~~s 93 (275)
T 1o66_A 27 SSFAALMDDAG--VEMLLVGDSLGMAVQGRKST-------LPVSLRDMCYHTECVARG----AKNAMIVSDLPFGAYQQS 93 (275)
T ss_dssp HHHHHHHHHTT--CCEEEECTTHHHHTTCCSSS-------TTCCHHHHHHHHHHHHHH----CSSSEEEEECCTTSSSSC
T ss_pred HHHHHHHHHcC--CCEEEECHHHHHHHcCCCCC-------CCCCHHHHHHHHHHHHhh----CCCCeEEEECCCCCccCC
Confidence 34556667776 8888432 111222 112234444444444332 44 4577787653 24
Q ss_pred hhhHHHHHHHhccccCCccEEEEec
Q psy5880 192 LDEKKDIADVVLDSKCKVDGLIVSN 216 (328)
Q Consensus 192 ~~~~~~~a~~l~~~~~G~d~i~~~n 216 (328)
.++..+-+..+ .++|+++|.+=+
T Consensus 94 ~~~a~~na~rl--~kaGa~aVklEd 116 (275)
T 1o66_A 94 KEQAFAAAAEL--MAAGAHMVKLEG 116 (275)
T ss_dssp HHHHHHHHHHH--HHTTCSEEEEEC
T ss_pred HHHHHHHHHHH--HHcCCcEEEECC
Confidence 55666666677 779999997754
No 486
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=90.73 E-value=0.2 Score=43.59 Aligned_cols=120 Identities=14% Similarity=0.107 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhcccccEEEEccCC----CCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHH
Q psy5880 121 VVLDSVKGILKFGDVAHYFVVNVSS----PNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKK 196 (328)
Q Consensus 121 ~i~~~~~~a~~~~~~~d~ieiN~sc----Pn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~ 196 (328)
...+.++.+.+.+ +|.+++...- ||. .+-.++++++|+. .+.|+.+-+-.+ +. .
T Consensus 18 ~l~~~i~~~~~~G--ad~ihldi~DG~fvp~~---------~~g~~~v~~lr~~-------~~~~~~vhlmv~-dp---~ 75 (230)
T 1tqj_A 18 RLGEEIKAVDEAG--ADWIHVDVMDGRFVPNI---------TIGPLIVDAIRPL-------TKKTLDVHLMIV-EP---E 75 (230)
T ss_dssp GHHHHHHHHHHTT--CSEEEEEEEBSSSSSCB---------CBCHHHHHHHGGG-------CCSEEEEEEESS-SG---G
T ss_pred HHHHHHHHHHHcC--CCEEEEEEEecCCCcch---------hhhHHHHHHHHhh-------cCCcEEEEEEcc-CH---H
Confidence 3444455555554 8998876531 221 1112566666654 456877544332 22 2
Q ss_pred HHHHHhccccCCccEEEEecC--CccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 197 DIADVVLDSKCKVDGLIVSNT--TVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~--~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
.+++.+ .++|+|+++++.. ... ...+.++.+++.- +.+..+=.-+|+.+.
T Consensus 76 ~~i~~~--~~aGadgv~vh~e~~~~~-----------------------~~~~~~~~i~~~g---~~~gv~~~p~t~~e~ 127 (230)
T 1tqj_A 76 KYVEDF--AKAGADIISVHVEHNASP-----------------------HLHRTLCQIRELG---KKAGAVLNPSTPLDF 127 (230)
T ss_dssp GTHHHH--HHHTCSEEEEECSTTTCT-----------------------THHHHHHHHHHTT---CEEEEEECTTCCGGG
T ss_pred HHHHHH--HHcCCCEEEECcccccch-----------------------hHHHHHHHHHHcC---CcEEEEEeCCCcHHH
Confidence 345667 7889999999853 111 1235666666642 333433366788888
Q ss_pred HHHHHhccCeeeehhH
Q psy5880 275 FEKIKAGASLVQIYTS 290 (328)
Q Consensus 275 ~~~l~~GAd~V~vg~a 290 (328)
.+.+..++|.|.+++-
T Consensus 128 ~~~~~~~~D~v~~msv 143 (230)
T 1tqj_A 128 LEYVLPVCDLILIMSV 143 (230)
T ss_dssp GTTTGGGCSEEEEESS
T ss_pred HHHHHhcCCEEEEEEe
Confidence 8777789999977753
No 487
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=90.73 E-value=1.9 Score=36.17 Aligned_cols=109 Identities=23% Similarity=0.284 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
..+.++.+...+ +|+|++. .|+.. .+...+.++.+++.... .++|+++. + + ++.
T Consensus 28 ~~~~~~~~~~~G--~~~i~l~--~~~~~-------~~~~~~~~~~l~~~~~~----~~v~v~v~-----~--~----~~~ 81 (215)
T 1xi3_A 28 EVESVREALEGG--ATAIQMR--IKNAP-------TREMYEIGKTLRQLTRE----YDALFFVD-----D--R----VDV 81 (215)
T ss_dssp HHHHHHHHHHTT--CSEEEEC--CCSCC-------HHHHHHHHHHHHHHHHH----TTCEEEEE-----S--C----HHH
T ss_pred HHHHHHHHHHCC--CCEEEEC--CCCCC-------HHHHHHHHHHHHHHHHH----cCCeEEEc-----C--h----HHH
Confidence 344455555555 8999865 34421 12234445555544322 46788884 1 1 244
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhc
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~G 281 (328)
+ .++|+|+|++..... + .+.++++. . .+.+ + -.++|++++.++...|
T Consensus 82 a--~~~gad~v~l~~~~~-----------------------~--~~~~~~~~---~-~~~~-~-v~~~t~~e~~~~~~~g 128 (215)
T 1xi3_A 82 A--LAVDADGVQLGPEDM-----------------------P--IEVAKEIA---P-NLII-G-ASVYSLEEALEAEKKG 128 (215)
T ss_dssp H--HHHTCSEEEECTTSC-----------------------C--HHHHHHHC---T-TSEE-E-EEESSHHHHHHHHHHT
T ss_pred H--HHcCCCEEEECCccC-----------------------C--HHHHHHhC---C-CCEE-E-EecCCHHHHHHHHhcC
Confidence 5 678999997653211 0 12233332 1 1222 2 1358999999888899
Q ss_pred cCeeeehh
Q psy5880 282 ASLVQIYT 289 (328)
Q Consensus 282 Ad~V~vg~ 289 (328)
+|.|.++.
T Consensus 129 ~d~i~~~~ 136 (215)
T 1xi3_A 129 ADYLGAGS 136 (215)
T ss_dssp CSEEEEEC
T ss_pred CCEEEEcC
Confidence 99998743
No 488
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=90.67 E-value=2 Score=39.83 Aligned_cols=61 Identities=15% Similarity=0.013 Sum_probs=43.0
Q ss_pred HHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHH
Q psy5880 195 KKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDA 274 (328)
Q Consensus 195 ~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da 274 (328)
+.+.++.+ .+.|++.|.++.... ..+.++++++. + ++|+. .+.|.+++
T Consensus 111 ~~~~~~~~--~~~g~~~V~~~~g~~-------------------------~~~~i~~~~~~-g--~~v~~--~v~t~~~a 158 (369)
T 3bw2_A 111 YDAKLAVL--LDDPVPVVSFHFGVP-------------------------DREVIARLRRA-G--TLTLV--TATTPEEA 158 (369)
T ss_dssp HHHHHHHH--HHSCCSEEEEESSCC-------------------------CHHHHHHHHHT-T--CEEEE--EESSHHHH
T ss_pred HHHHHHHH--HhcCCCEEEEeCCCC-------------------------cHHHHHHHHHC-C--CeEEE--ECCCHHHH
Confidence 34556666 778888887663211 02556666663 3 77765 57899999
Q ss_pred HHHHHhccCeeee
Q psy5880 275 FEKIKAGASLVQI 287 (328)
Q Consensus 275 ~~~l~~GAd~V~v 287 (328)
.++.+.|+|+|.+
T Consensus 159 ~~a~~~GaD~i~v 171 (369)
T 3bw2_A 159 RAVEAAGADAVIA 171 (369)
T ss_dssp HHHHHTTCSEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 9999999999988
No 489
>3n3m_A Orotidine 5'-phosphate decarboxylase; P. falciparum, 5'-monophosphate decarboxylase, 6- UMP, lyase; HET: PGE NUP; 1.47A {Plasmodium falciparum} SCOP: c.1.2.3 PDB: 2qaf_A* 3bar_A* 2q8z_A* 3mwa_A* 3n2m_A* 3bpw_A* 3n34_A* 3s9y_A* 2f84_A 2q8l_A 2za1_A* 2za2_A 2za3_A* 2zcg_A 3vi2_A*
Probab=90.48 E-value=2.3 Score=39.02 Aligned_cols=63 Identities=10% Similarity=0.096 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCccEEE--ecC-CCCHHHHHHHH---HhccCeeeehhHHhhc-Cc-hHHHHHHHHHHHHHHH
Q psy5880 249 ISEMYKLTKGKLPIIG--VGG-VFSGKDAFEKI---KAGASLVQIYTSFVYH-GP-PLVTRIKSELEELLQK 312 (328)
Q Consensus 249 v~~i~~~~~~~ipvia--~GG-I~s~~da~~~l---~~GAd~V~vg~a~l~~-gp-~~~~~i~~~l~~~m~~ 312 (328)
++.+|+.++ +.+++. .|. -.+.+++...- ..|++.+.+||+++.. +| ..++++.+++...+.+
T Consensus 268 ~~~iR~~~p-~~~iLtPGIGAQggDq~rv~tp~~a~~~g~~~ivVGR~I~~A~dP~~Aa~~i~~ei~~~l~~ 338 (342)
T 3n3m_A 268 MNYIRTYFP-NCYILSPGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAILKQ 338 (342)
T ss_dssp HHHHHHHST-TCCEEECCSSTTCCCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CCeEEeCCCCcCCCCHHHHHhhhhhhhcCceEEEcChhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 566777774 465542 221 13455543332 2578999999999853 34 3467777777766643
No 490
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=90.44 E-value=1.5 Score=41.86 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCc
Q psy5880 163 LLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLR 242 (328)
Q Consensus 163 i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~ 242 (328)
.+++|++. .++||+.|= +..+ ..++.+ + ..+|+|+|-+..+...
T Consensus 99 dL~~vr~~-------v~lPvLrKD--FI~d--~~Qi~e-a--~~~GAD~ILLi~a~l~---------------------- 142 (452)
T 1pii_A 99 FLPIVSQI-------APQPILCKD--FIID--PYQIYL-A--RYYQADACLLMLSVLD---------------------- 142 (452)
T ss_dssp HHHHHHHH-------CCSCEEEES--CCCS--HHHHHH-H--HHTTCSEEEEETTTCC----------------------
T ss_pred HHHHHHHh-------cCCCeEEEe--ccCC--HHHHHH-H--HHcCCCEEEEEcccCC----------------------
Confidence 34556665 689998775 2222 235544 5 6899999988765422
Q ss_pred hHHH-HHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeehh-HHh--hcCchHHHHHHHHHHH---HHHHhCC
Q psy5880 243 NKST-ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYT-SFV--YHGPPLVTRIKSELEE---LLQKEGY 315 (328)
Q Consensus 243 ~~~l-~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg~-a~l--~~gp~~~~~i~~~l~~---~m~~~g~ 315 (328)
+..+ +++..+++ ++ +.+++ -|+|.+++..++.+|+++|++=- .+- .-+.+...++...+.. .+.+-|+
T Consensus 143 ~~~l~~l~~~a~~-lg--m~~Lv--Evh~~eE~~~A~~lga~iIGinnr~L~t~~~dl~~~~~L~~~ip~~~~vIaEsGI 217 (452)
T 1pii_A 143 DDQYRQLAAVAHS-LE--MGVLT--EVSNEEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGI 217 (452)
T ss_dssp HHHHHHHHHHHHH-TT--CEEEE--EECSHHHHHHHHHTTCSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEESCC
T ss_pred HHHHHHHHHHHHH-cC--CeEEE--EeCCHHHHHHHHHCCCCEEEEeCCCCCCCCCCHHHHHHHHHhCCCCCeEEEECCC
Confidence 1123 33333443 44 66666 58999999999999999998762 221 1134556666655532 4567788
Q ss_pred CCHHHHhc
Q psy5880 316 NSVSQAVG 323 (328)
Q Consensus 316 ~si~e~~G 323 (328)
.|-+|++-
T Consensus 218 ~t~edv~~ 225 (452)
T 1pii_A 218 NTYAQVRE 225 (452)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
Confidence 88777653
No 491
>3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A
Probab=90.42 E-value=2.7 Score=40.37 Aligned_cols=126 Identities=8% Similarity=-0.044 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhc--ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 122 VLDSVKGILKFG--DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 122 i~~~~~~a~~~~--~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
.+++++.++++. .++..+-+.++.+. ++.-.+.+++||++ + .+++|++.....++.++...++
T Consensus 201 ~e~~~~~a~~~~~~~Gf~~~KlKvG~~~---------~~~Di~rv~avRea---~---pd~~L~vDaN~~w~~~~Ai~~~ 265 (470)
T 3p0w_A 201 PAAIARLAEAATERYGFADFKLKGGVMP---------GAEEMEAIAAIKAR---F---PHARVTLDPNGAWSLNEAIALC 265 (470)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECSSSC---------HHHHHHHHHHHHHH---C---TTSEEEEECTTBBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCC---------HHHHHHHHHHHHHh---C---CCCeEEeeCCCCCCHHHHHHHH
Confidence 455555555432 25889988776321 12224566677765 2 4788999988889988888888
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+. +.+| ..| +. +......++..+++++.++ +||.+.=-+.+..++.++++
T Consensus 266 ~~L--e~~-l~~i-------EeP-------------~~-~~d~~~~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~l~ 319 (470)
T 3p0w_A 266 KGQ--GHL-VAYA-------EDP-------------CG-PEAGYSGREVMAEFKRATG--IPTATNMIATDWRQMGHAVQ 319 (470)
T ss_dssp TTC--TTT-CSEE-------ESC-------------BC-CBTTBCHHHHHHHHHHHHC--CCEEESSSSCSHHHHHHHHH
T ss_pred Hhc--ccc-ceee-------cCC-------------CC-hhhccchHHHHHHHHhcCC--CCEEeCCccCCHHHHHHHHH
Confidence 877 554 4433 111 00 0000001456678888887 99888656888999999999
Q ss_pred hc-cCeeeeh
Q psy5880 280 AG-ASLVQIY 288 (328)
Q Consensus 280 ~G-Ad~V~vg 288 (328)
.| +|.+++=
T Consensus 320 ~~a~div~~d 329 (470)
T 3p0w_A 320 LHAVDIPLAD 329 (470)
T ss_dssp TTCCSEEBCC
T ss_pred cCCCCEEEec
Confidence 88 7888754
No 492
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=90.40 E-value=0.92 Score=42.62 Aligned_cols=105 Identities=23% Similarity=0.219 Sum_probs=63.6
Q ss_pred CCCEEEEeCCCCChhhHHHHHHHhccccCCccEEEEecCCcc---ch-h---hh-cc-cc--cccc------------CC
Q psy5880 179 LPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVD---RY-E---YL-DA-RY--KEET------------GG 235 (328)
Q Consensus 179 ~~Pv~vKl~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~---~~-~---~~-~~-~~--~~~~------------gg 235 (328)
+.|+++-+-...+.+...++++.+ +++|+++++++-.... +. + .. .| .. .+.. ++
T Consensus 146 ~~~~~~QLy~~~d~~~~~~~~~ra--~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~ 223 (392)
T 2nzl_A 146 EALRWLQLYIYKDREVTKKLVRQA--EKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGD 223 (392)
T ss_dssp TSEEEEEECCBSSHHHHHHHHHHH--HHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC---------------
T ss_pred CCcEEEEEEecCCHHHHHHHHHHH--HHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccC
Confidence 568999885544555677888998 8999999877532211 10 0 00 01 00 0000 00
Q ss_pred CCC--C-----cCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHHhccCeeeeh
Q psy5880 236 LSG--E-----PLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288 (328)
Q Consensus 236 ~sg--~-----~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~~GAd~V~vg 288 (328)
-++ . ......++.++.+++.++ +||+.- |+.+++++..+.++|||+|.+.
T Consensus 224 g~~~~~~~~~~~d~~~~~~~i~~lr~~~~--~PvivK-gv~~~e~A~~a~~aGad~I~vs 280 (392)
T 2nzl_A 224 DSGLAAYVAKAIDPSISWEDIKWLRRLTS--LPIVAK-GILRGDDAREAVKHGLNGILVS 280 (392)
T ss_dssp --CHHHHHHHHBCTTCCHHHHHHHC--CC--SCEEEE-EECCHHHHHHHHHTTCCEEEEC
T ss_pred cchHHHHHhhcCChHHHHHHHHHHHHhhC--CCEEEE-ecCCHHHHHHHHHcCCCEEEeC
Confidence 010 0 011134677888888876 898876 5689999999999999999993
No 493
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=90.21 E-value=1.5 Score=38.46 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcccccEEEEcc----CCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCC-CCCEEEEeCCCCChhhHH
Q psy5880 122 VLDSVKGILKFGDVAHYFVVNV----SSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKP-LPPILVKIAPDLSLDEKK 196 (328)
Q Consensus 122 i~~~~~~a~~~~~~~d~ieiN~----scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~-~~Pv~vKl~~~~~~~~~~ 196 (328)
+.+-++.++.++ +|.+.+.+ ..||.. +-.++++++|+. . ++|+-+.+-..-. .
T Consensus 42 L~~~i~~l~~~G--~d~lHvDVmDg~FVpnit---------~G~~~v~~lr~~-------~p~~~ldvHLmv~~p----~ 99 (246)
T 3inp_A 42 LGDDVKAVLAAG--ADNIHFDVMDNHYVPNLT---------FGPMVLKALRDY-------GITAGMDVHLMVKPV----D 99 (246)
T ss_dssp HHHHHHHHHHTT--CCCEEEEEEBSSSSSCBC---------CCHHHHHHHHHH-------TCCSCEEEEEECSSC----H
T ss_pred HHHHHHHHHHcC--CCEEEEEecCCCcCcchh---------cCHHHHHHHHHh-------CCCCeEEEEEeeCCH----H
Confidence 445555555555 77776643 346642 112567777776 4 7899998875433 3
Q ss_pred HHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHH
Q psy5880 197 DIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFE 276 (328)
Q Consensus 197 ~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~ 276 (328)
..++.+ .++|+|+|+++.-... ...+.++++++.-- .+-++..--+..+. .+
T Consensus 100 ~~i~~~--~~aGAd~itvH~Ea~~-----------------------~~~~~i~~ir~~G~--k~Gvalnp~Tp~e~-l~ 151 (246)
T 3inp_A 100 ALIESF--AKAGATSIVFHPEASE-----------------------HIDRSLQLIKSFGI--QAGLALNPATGIDC-LK 151 (246)
T ss_dssp HHHHHH--HHHTCSEEEECGGGCS-----------------------CHHHHHHHHHTTTS--EEEEEECTTCCSGG-GT
T ss_pred HHHHHH--HHcCCCEEEEccccch-----------------------hHHHHHHHHHHcCC--eEEEEecCCCCHHH-HH
Confidence 456777 8999999999842110 11356677766521 33444433344444 43
Q ss_pred HHHhccCeeeehh---HHhh--cCchHHHHHHHHHHHHHHHhCC
Q psy5880 277 KIKAGASLVQIYT---SFVY--HGPPLVTRIKSELEELLQKEGY 315 (328)
Q Consensus 277 ~l~~GAd~V~vg~---a~l~--~gp~~~~~i~~~l~~~m~~~g~ 315 (328)
.+..+.|.|.+-+ ++-- -.|..+.++. .++++..++|+
T Consensus 152 ~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~-~lr~~~~~~~~ 194 (246)
T 3inp_A 152 YVESNIDRVLIMSVNPGFGGQKFIPAMLDKAK-EISKWISSTDR 194 (246)
T ss_dssp TTGGGCSEEEEECSCTTC--CCCCTTHHHHHH-HHHHHHHHHTS
T ss_pred HHHhcCCEEEEeeecCCCCCcccchHHHHHHH-HHHHHHHhcCC
Confidence 4444788887644 2210 0145556654 45666666664
No 494
>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54}
Probab=90.16 E-value=1.8 Score=40.16 Aligned_cols=126 Identities=11% Similarity=-0.007 Sum_probs=80.0
Q ss_pred HHHHHHHHHhc-ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHHHH
Q psy5880 123 LDSVKGILKFG-DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADV 201 (328)
Q Consensus 123 ~~~~~~a~~~~-~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a~~ 201 (328)
+++++.++++. .++..+-+.++.. +.+.-.+.++++++.. + ..++.+.+.....++.++..++++.
T Consensus 164 e~~~~~a~~~~~~G~~~~K~Kvg~~---------~~~~d~~~v~avr~~~---g-~~~~~l~vDaN~~~~~~~a~~~~~~ 230 (377)
T 2pge_A 164 AFMQEQIEAKLAEGYGCLKLKIGAI---------DFDKECALLAGIRESF---S-PQQLEIRVDANGAFSPANAPQRLKR 230 (377)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEC------------CHHHHHHHHHHHHHHS---C-TTTCEEEEECTTBBCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhheeecCCC---------ChHHHHHHHHHHHHHc---C-CCCceEEEECCCCCCHHHHHHHHHH
Confidence 44444444443 2578887765521 2334456677776652 1 0247888888777887788889999
Q ss_pred hccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH--HHHHHH
Q psy5880 202 VLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD--AFEKIK 279 (328)
Q Consensus 202 l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d--a~~~l~ 279 (328)
+ .+.++.+|- .| ..+..++..+++++.++ +||.+-=-+.+..+ +.++++
T Consensus 231 l--~~~~i~~iE-------qP------------------~~~~d~~~~~~l~~~~~--ipIa~dE~~~~~~~~~~~~~i~ 281 (377)
T 2pge_A 231 L--SQFHLHSIE-------QP------------------IRQHQWSEMAALCANSP--LAIALDEELIGLGAEQRSAMLD 281 (377)
T ss_dssp H--HTTCCSEEE-------CC------------------BCSSCHHHHHHHHHHCS--SCEEESGGGTTCCTHHHHHHHH
T ss_pred H--hcCCCcEEE-------cc------------------CCcccHHHHHHHHhhCC--CcEEECCccCCcchHHHHHHHH
Confidence 9 888776651 11 11122455677777776 99998888888777 668887
Q ss_pred hc-cCeeeehhH
Q psy5880 280 AG-ASLVQIYTS 290 (328)
Q Consensus 280 ~G-Ad~V~vg~a 290 (328)
.| +|.|++=-.
T Consensus 282 ~~a~d~i~ik~~ 293 (377)
T 2pge_A 282 AIRPQYIILKPS 293 (377)
T ss_dssp HHCCSEEEECHH
T ss_pred hCCCCEEEECch
Confidence 66 888876443
No 495
>3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A
Probab=90.15 E-value=7.4 Score=36.98 Aligned_cols=122 Identities=7% Similarity=0.020 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhc-c-cccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 122 VLDSVKGILKFG-D-VAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 122 i~~~~~~a~~~~-~-~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
.+++++.++++. . ++..+-+.++.. +++.-.+.+++||++. .+++|++.-...++.++...++
T Consensus 189 ~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------~~~~Di~rv~avRea~------pd~~L~vDaN~~w~~~~Ai~~~ 253 (441)
T 3vc5_A 189 PDGIVAQARLLIGEYGFRSIKLKGGVF---------PPEQEAEAIQALRDAF------PGLPLRLDPNAAWTVETSIRVG 253 (441)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEECSSS---------CHHHHHHHHHHHHHHS------TTCCEEEECTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEccCCC---------CHHHHHHHHHHHHHhC------CCCcEeccCCCCCCHHHHHHHH
Confidence 445555555442 2 588888776531 1222345667777663 4789999998889988888999
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+. +.+| ..| + . .++..+++++.++ +||.+.=.+.+..++.++++
T Consensus 254 ~~L--~~~-l~~i-------EeP-------------~-----~--~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~l~ 301 (441)
T 3vc5_A 254 RAL--DGV-LEYL-------EDP-------------T-----P--GIDGMARVAAEVP--MPLATNMCVVTPEHLPAAVE 301 (441)
T ss_dssp HHT--TTT-CSEE-------ECC-------------S-----S--SHHHHHHHHTTSS--SCEEESSSCCSGGGHHHHHH
T ss_pred HHH--HHH-HHHh-------hcc-------------C-----C--CHHHHHHHHhcCC--CCEEeCCCCCCHHHHHHHHH
Confidence 998 666 5554 111 1 0 2456678888877 99988778899999999999
Q ss_pred hc-cCeeeehhH
Q psy5880 280 AG-ASLVQIYTS 290 (328)
Q Consensus 280 ~G-Ad~V~vg~a 290 (328)
.| +|.|++=-.
T Consensus 302 ~~a~dii~~d~~ 313 (441)
T 3vc5_A 302 RRPIGVLLIDHH 313 (441)
T ss_dssp HCCCSEEEECHH
T ss_pred hCCCCEEeechh
Confidence 87 888887433
No 496
>3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C*
Probab=90.08 E-value=4 Score=38.97 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhc--ccccEEEEccCCCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCChhhHHHHH
Q psy5880 122 VLDSVKGILKFG--DVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIA 199 (328)
Q Consensus 122 i~~~~~~a~~~~--~~~d~ieiN~scPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~~~~~~~~~a 199 (328)
.+++++.++++. .++..+-+.++.+. ++.-.+.+++||++ + .+++|++--...++.++...++
T Consensus 186 ~e~~~~~a~~~~~~~Gf~~~KlKvG~~~---------~~~Di~~v~avRea---~---pd~~L~vDaN~~w~~~~A~~~~ 250 (455)
T 3pfr_A 186 TQAVIELAAASKDRYGFKDFKLKGGVFE---------GSKEIDTVIELKKH---F---PDARITLDPNGCWSLDEAIQLC 250 (455)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEECSSSC---------HHHHHHHHHHHHHH---C---TTCCEEEECTTBSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCC---------HHHHHHHHHHHHHh---C---CCCeEeecCCCCCCHHHHHHHH
Confidence 455555555432 25888887766321 12224556677665 2 5789999988889988888888
Q ss_pred HHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHHHHHHHH
Q psy5880 200 DVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIK 279 (328)
Q Consensus 200 ~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~da~~~l~ 279 (328)
+.+ .+. +.+| ..| +. +......++..+++++.++ +||.+.=-+.+..++.++++
T Consensus 251 ~~L--~~~-l~~i-------EeP-------------~~-~~d~~~~~~~~~~l~~~~~--iPIa~dE~~~~~~~~~~~i~ 304 (455)
T 3pfr_A 251 KGL--NDV-LTYA-------EDP-------------CI-GENGYSGREIMAEFRRRTG--IPTATNMIATNWREMCHAIM 304 (455)
T ss_dssp TTC--TTT-CSEE-------ESC-------------BC-CBTTBCHHHHHHHHHHHHC--CCEEESSSCCSHHHHHHHHH
T ss_pred Hhh--ccc-ceee-------ecC-------------CC-hhhccchHHHHHHHHhcCC--CCEEeCCCcCCHHHHHHHHH
Confidence 877 554 4433 111 00 0000001456678888887 99887556788999999999
Q ss_pred hc-cCeeeeh
Q psy5880 280 AG-ASLVQIY 288 (328)
Q Consensus 280 ~G-Ad~V~vg 288 (328)
.| +|.+|+-
T Consensus 305 ~~a~di~~~d 314 (455)
T 3pfr_A 305 LQSVDIPLAD 314 (455)
T ss_dssp HTCCSEEBCC
T ss_pred cCCCCEEEec
Confidence 88 7887753
No 497
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=89.95 E-value=2.9 Score=36.76 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=56.0
Q ss_pred hHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEecCCCCHHH
Q psy5880 194 EKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273 (328)
Q Consensus 194 ~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~GGI~s~~d 273 (328)
+..++++. +++|+++|.+-.-.. .+.| +++.+..+++.++ +||.--==|-++-+
T Consensus 65 dp~~iA~~---~~~GA~aiSVLTd~~---------------~F~G------s~~~L~~vr~~v~--lPvLrKDFiid~yQ 118 (258)
T 4a29_A 65 DPIEYAKF---MERYAVGLSITTEEK---------------YFNG------SYETLRKIASSVS--IPILMSDFIVKESQ 118 (258)
T ss_dssp CHHHHHHH---HTTTCSEEEEECCST---------------TTCC------CHHHHHHHHTTCS--SCEEEESCCCSHHH
T ss_pred CHHHHHHH---HhCCCeEEEEeCCCC---------------CCCC------CHHHHHHHHHhcC--CCEeeccccccHHH
Confidence 46677775 468999997653211 1223 2578888999987 99998888999999
Q ss_pred HHHHHHhccCeeeehhHHh
Q psy5880 274 AFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 274 a~~~l~~GAd~V~vg~a~l 292 (328)
+.++...|||+|-+=-+++
T Consensus 119 I~eAr~~GADaILLI~a~L 137 (258)
T 4a29_A 119 IDDAYNLGADTVLLIVKIL 137 (258)
T ss_dssp HHHHHHHTCSEEEEEGGGS
T ss_pred HHHHHHcCCCeeehHHhhc
Confidence 9999999999998766665
No 498
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=89.95 E-value=4.5 Score=36.24 Aligned_cols=126 Identities=12% Similarity=0.114 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC-ChhhHHHHHHHhccccCCccEEEEecCCccchhhhccccccccCCCCC
Q psy5880 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDL-SLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG 238 (328)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~-~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~~~~~gg~sg 238 (328)
+.+++..++..++. .+.||++.+..++ +.++..+-++.+ .++|+++|.+=...... ..|-..|
T Consensus 67 ~~em~~~~~~I~r~----~~~PviaD~d~Gyg~~~~~~~~v~~l--~~aGa~gv~iED~~~pK----------rcgh~~g 130 (287)
T 3b8i_A 67 LSEFVEQATRIGRV----ARLPVIADADHGYGNALNVMRTVVEL--ERAGIAALTIEDTLLPA----------QFGRKST 130 (287)
T ss_dssp HHHHHHHHHHHHTT----CSSCEEEECTTCSSSHHHHHHHHHHH--HHHTCSEEEEECBCCSC----------CTTTCTT
T ss_pred HHHHHHHHHHHHhc----CCCCEEEECCCCCCCHHHHHHHHHHH--HHhCCeEEEEcCCCCcc----------ccCCCCC
Confidence 55556555555432 6889999998764 445677778888 88999999886543210 0122334
Q ss_pred CcCchH--HHHHHHHHHHHc-CCCccEEEecC--CC----CHHHHHHHHHhccCeeeehhHHhhcCchHHHHHHHH
Q psy5880 239 EPLRNK--STELISEMYKLT-KGKLPIIGVGG--VF----SGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305 (328)
Q Consensus 239 ~~~~~~--~l~~v~~i~~~~-~~~ipvia~GG--I~----s~~da~~~l~~GAd~V~vg~a~l~~gp~~~~~i~~~ 305 (328)
. +.+. ..+.|+.++++- .+++-|++=.. .. ..+++..+.++|||+|.+=. + ..++.++++.+.
T Consensus 131 k-l~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~Ra~ay~eAGAd~i~~e~-~--~~~~~~~~i~~~ 202 (287)
T 3b8i_A 131 D-LICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVG-V--RDFAHLEAIAEH 202 (287)
T ss_dssp C-BCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHHHHHHHHHTTCSEEEEEC-C--CSHHHHHHHHTT
T ss_pred C-ccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHHHHHHHHHcCCCEEEecC-C--CCHHHHHHHHHh
Confidence 4 4433 244455554442 22355555322 11 23345566678999998753 2 234566666544
No 499
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=89.93 E-value=11 Score=34.17 Aligned_cols=177 Identities=13% Similarity=0.053 Sum_probs=93.4
Q ss_pred cCccCCCchHHHHHHHHHHHHHhhhhcCCCCCcchhcccCCcccccccchhHHHHHHHHHHHHhcccccEEEEc--cC--
Q psy5880 69 ANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVN--VS-- 144 (328)
Q Consensus 69 ~gl~~~~~~~~L~~ll~~v~~~~~~~~~~~~~Pv~vki~~~l~~~~n~~~~~~i~~~~~~a~~~~~~~d~ieiN--~s-- 144 (328)
.|+++.. .-.+.+.+..++...... ...|+.+.++-+- + ....+...+....+++ +.++.|- ..
T Consensus 75 lG~pD~~-~vt~~em~~~~~~I~r~~---~~~PviaD~d~Gy--g----~~~~v~~tv~~l~~aG--aagv~iED~~~~k 142 (318)
T 1zlp_A 75 LGLPDFG-LLTTTEVVEATRRITAAA---PNLCVVVDGDTGG--G----GPLNVQRFIRELISAG--AKGVFLEDQVWPK 142 (318)
T ss_dssp HCCCSSS-CSCHHHHHHHHHHHHHHS---SSSEEEEECTTCS--S----SHHHHHHHHHHHHHTT--CCEEEEECBCSSC
T ss_pred cCCCCCC-CCCHHHHHHHHHHHHhhc---cCCCEEEeCCCCC--C----CHHHHHHHHHHHHHcC--CcEEEECCCCCCc
Confidence 5666543 223444444444333221 1368776655441 1 1233444444444455 7776552 21
Q ss_pred -CCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC--ChhhHHHHHHHhccccCCccEEEEecCCccc
Q psy5880 145 -SPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDL--SLDEKKDIADVVLDSKCKVDGLIVSNTTVDR 221 (328)
Q Consensus 145 -cPn~~g~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~Pv~vKl~~~~--~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~ 221 (328)
|-+..|.. +-..+...+-++++++++. ..++-|..|.-... ..++..+=++.+ .++|+|.|.+.+. .
T Consensus 143 ~cgH~~gk~-L~p~~e~~~rI~Aa~~A~~----~~~~~I~ARtda~a~~gl~~ai~Ra~Ay--~eAGAd~i~~e~~-~-- 212 (318)
T 1zlp_A 143 KCGHMRGKA-VVPAEEHALKIAAAREAIG----DSDFFLVARTDARAPHGLEEGIRRANLY--KEAGADATFVEAP-A-- 212 (318)
T ss_dssp CCSSSSCCC-BCCHHHHHHHHHHHHHHHT----TSCCEEEEEECTHHHHHHHHHHHHHHHH--HHTTCSEEEECCC-C--
T ss_pred cccCCCCCc-cCCHHHHHHHHHHHHHhcc----cCCcEEEEeeHHhhhcCHHHHHHHHHHH--HHcCCCEEEEcCC-C--
Confidence 21221111 1122334445555555532 13455566654321 113455566777 8999999977642 1
Q ss_pred hhhhccccccccCCCCCCcCchHHHHHHHHHHHHcCCCccEEEe---cCCCCHHHHHHHHHhccCeeeehhHHh
Q psy5880 222 YEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGV---GGVFSGKDAFEKIKAGASLVQIYTSFV 292 (328)
Q Consensus 222 ~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~~~ipvia~---GGI~s~~da~~~l~~GAd~V~vg~a~l 292 (328)
..+.++++.+.++ +|+.++ ||-...-+..++-+.|...|.++..++
T Consensus 213 -----------------------~~e~~~~i~~~l~--~P~lan~~~~g~~~~~~~~eL~~lGv~~v~~~~~~~ 261 (318)
T 1zlp_A 213 -----------------------NVDELKEVSAKTK--GLRIANMIEGGKTPLHTPEEFKEMGFHLIAHSLTAV 261 (318)
T ss_dssp -----------------------SHHHHHHHHHHSC--SEEEEEECTTSSSCCCCHHHHHHHTCCEEEECSHHH
T ss_pred -----------------------CHHHHHHHHHhcC--CCEEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHH
Confidence 1366788888887 999543 432222335666779999999987775
No 500
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=89.91 E-value=1.4 Score=38.74 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=57.0
Q ss_pred CEEEEe-CCCCChhhHHHHHHHhccccCCccEEEEecCCccchhhhcccc-----ccccCCCCCCcCchHHHHHHHHHHH
Q psy5880 181 PILVKI-APDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARY-----KEETGGLSGEPLRNKSTELISEMYK 254 (328)
Q Consensus 181 Pv~vKl-~~~~~~~~~~~~a~~l~~~~~G~d~i~~~n~~~~~~~~~~~~~-----~~~~gg~sg~~~~~~~l~~v~~i~~ 254 (328)
.++.=+ ..+.+.++..+.++.+ .++|+|.|.+...+.. |..+.|.. ....+|. .....++.++++++
T Consensus 19 ~~~~~i~~g~~~~~~~~~~~~~l--~~~Gad~ielg~p~~d-p~~dg~~i~~a~~~al~~g~----~~~~~~~~i~~ir~ 91 (262)
T 1rd5_A 19 AFIPYITAGDPDLATTAEALRLL--DGCGADVIELGVPCSD-PYIDGPIIQASVARALASGT----TMDAVLEMLREVTP 91 (262)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHH--HHTTCSSEEEECCCSC-CTTSCHHHHHHHHHHHTTTC----CHHHHHHHHHHHGG
T ss_pred eEEEEeeCCCCCHHHHHHHHHHH--HHcCCCEEEECCCCCC-cccCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHh
Confidence 344333 3445556788899999 8999999988643321 11000000 0001221 11234678888888
Q ss_pred HcCCCccEEEecCCCCHH---HHHHHHHhccCeeeeh
Q psy5880 255 LTKGKLPIIGVGGVFSGK---DAFEKIKAGASLVQIY 288 (328)
Q Consensus 255 ~~~~~ipvia~GGI~s~~---da~~~l~~GAd~V~vg 288 (328)
.++ +|++..+ ..++. .+.++.++|||.|.+.
T Consensus 92 ~~~--~Pv~~m~-~~~~~~~~~~~~a~~aGadgv~v~ 125 (262)
T 1rd5_A 92 ELS--CPVVLLS-YYKPIMFRSLAKMKEAGVHGLIVP 125 (262)
T ss_dssp GCS--SCEEEEC-CSHHHHSCCTHHHHHTTCCEEECT
T ss_pred cCC--CCEEEEe-cCcHHHHHHHHHHHHcCCCEEEEc
Confidence 765 9998864 22332 1334788999998875
Done!