RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5880
(328 letters)
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase;
HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A*
2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A*
3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A*
2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Length = 367
Score = 332 bits (854), Expect = e-113
Identities = 113/212 (53%), Positives = 150/212 (70%), Gaps = 2/212 (0%)
Query: 116 KDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA 175
K D D +G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++ R+ L
Sbjct: 157 KTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLR 216
Query: 176 VKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG 235
P +LVKIAPDL+ +K+DIA VV + +DGLIV+NTTV R L + ETGG
Sbjct: 217 RVHRPAVLVKIAPDLTSQDKEDIASVVKE--LGIDGLIVTNTTVSRPAGLQGALRSETGG 274
Query: 236 LSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHG 295
LSG+PLR+ ST+ I EMY LT+G++PIIGVGGV SG+DA EKI+AGASLVQ+YT+ + G
Sbjct: 275 LSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWG 334
Query: 296 PPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
PP+V ++K ELE LL+++G+ V+ A+GA H+
Sbjct: 335 PPVVGKVKRELEALLKEQGFGGVTDAIGADHR 366
Score = 121 bits (306), Expect = 6e-32
Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 46 LLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVK 105
G+ G +A Y VVNVSSPNTA LR LQ K +L+ LL V++ R+ L P +LVK
Sbjct: 167 AEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVK 226
Query: 106 IAPDLSLDEKKDIADVVLDS-VKGI 129
IAPDL+ +K+DIA VV + + G+
Sbjct: 227 IAPDLTSQDKEDIASVVKELGIDGL 251
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial;
triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein,
membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A
{Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A*
3sfk_A*
Length = 415
Score = 323 bits (829), Expect = e-109
Identities = 89/226 (39%), Positives = 133/226 (58%), Gaps = 18/226 (7%)
Query: 116 KDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA 175
KD ++V D I K G A Y +NVSSPNT LR Q +LK+++ +V E + L
Sbjct: 192 KDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLE 251
Query: 176 VKPL--------------PPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDR 221
+ P + VK+APDL+ ++KK+IADV+L+ +DG+I+SNTT
Sbjct: 252 KNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLE--TNIDGMIISNTTTQI 309
Query: 222 YEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG 281
+ ++ + GG+SG L++ ST+ I EMY T ++PII GG+FSG DA EKI+AG
Sbjct: 310 -NDI-KSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAG 367
Query: 282 ASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
AS+ Q+Y+ V++G +IK EL LL + GY ++ +A+G H
Sbjct: 368 ASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYNLKEAIGRKHS 413
Score = 115 bits (290), Expect = 2e-29
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 15/99 (15%)
Query: 46 LLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPL------ 99
I K G A Y +NVSSPNT LR Q +LK+++ +V E + L +
Sbjct: 202 KYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFL 261
Query: 100 --------PPILVKIAPDLSLDEKKDIADVVLDS-VKGI 129
P + VK+APDL+ ++KK+IADV+L++ + G+
Sbjct: 262 WFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGM 300
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri,
dihydroorotate; alpha-beta barrel, TIM barrel,
oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium
falciparum} SCOP: c.1.4.1
Length = 443
Score = 308 bits (791), Expect = e-103
Identities = 89/257 (34%), Positives = 134/257 (52%), Gaps = 48/257 (18%)
Query: 116 KDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA 175
KD ++V D I K G A Y +NVSSPNT LR Q +LK+++ +V E + L
Sbjct: 190 KDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLE 249
Query: 176 VKPL--------------------------------------------PPILVKIAPDLS 191
+ P + VK+APDL+
Sbjct: 250 KNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLN 309
Query: 192 LDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISE 251
++KK+IADV+L++ +DG+I+SNTT + ++ + GG+SG L++ ST+ I E
Sbjct: 310 QEQKKEIADVLLETN--IDGMIISNTTTQINDIK--SFENKKGGVSGAKLKDISTKFICE 365
Query: 252 MYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQ 311
MY T ++PII GG+FSG DA EKI+AGAS+ Q+Y+ V++G +IK EL LL
Sbjct: 366 MYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLY 425
Query: 312 KEGYNSVSQAVGAAHKS 328
+ GY ++ +A+G H
Sbjct: 426 QRGYYNLKEAIGRKHSK 442
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN
binding domain, orotate complex, oxidoreductase; HET:
MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Length = 336
Score = 287 bits (738), Expect = 2e-96
Identities = 82/191 (42%), Positives = 112/191 (58%), Gaps = 4/191 (2%)
Query: 118 IADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVK 177
+ D + + K A Y +N+SSPNT LR LQ + L LL + +N L
Sbjct: 148 VEQGKDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAM 207
Query: 178 PL--PPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG 235
PI VKIAPDLS +E +AD ++ +DG+I +NTT+DR + ++TGG
Sbjct: 208 HHKYVPIAVKIAPDLSEEELIQVADSLVRHN--IDGVIATNTTLDRSLVQGMKNCDQTGG 265
Query: 236 LSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHG 295
LSG PL+ KSTE+I + G+LPIIGVGG+ S A EKI AGASLVQIY+ F++ G
Sbjct: 266 LSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKG 325
Query: 296 PPLVTRIKSEL 306
PPL+ I + +
Sbjct: 326 PPLIKEIVTHI 336
Score = 115 bits (291), Expect = 5e-30
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 46 LLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPL--PPIL 103
L+ + K A Y +N+SSPNT LR LQ + L LL + +N L PI
Sbjct: 156 LICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIA 215
Query: 104 VKIAPDLSLDEKKDIADVVLDS-VKGI 129
VKIAPDLS +E +AD ++ + G+
Sbjct: 216 VKIAPDLSEEELIQVADSLVRHNIDGV 242
>3gz3_A Dihydroorotate dehydrogenase, putative; dhodh, oxidoreductase; HET:
FMN ORO; 1.90A {Leishmania major} PDB: 3gye_A*
Length = 354
Score = 226 bits (579), Expect = 2e-72
Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 23/233 (9%)
Query: 101 PILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAK-DQ 159
P+ + ++ + + V + + +N+S PN ++ D
Sbjct: 128 PLFLSMS-------GLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDA 180
Query: 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTV 219
++ L V E VK+ P A+++ + KV + N+
Sbjct: 181 MRQCLTAVSEVYPH-------SFGVKMPPYFDFAHFDAAAEILNE-FPKVQFITCINSIG 232
Query: 220 D------RYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273
+ E + + K+ GGL G + + I+ Y+ GK I G GGV++G+D
Sbjct: 233 NGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGK-LIFGCGGVYTGED 291
Query: 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAH 326
AF + AGAS+VQ+ T+ GP + R+ SEL ++ K+ Y ++ + G
Sbjct: 292 AFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRYQTLDEFRGKVR 344
Score = 66.9 bits (164), Expect = 1e-12
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 52 FGDVAHYFVVNVSSPNTANLRKLQAK-DQLKHLLKTVVETRNQLALKPLPPILVKIAPDL 110
+ +N+S PN ++ D ++ L V E VK+ P
Sbjct: 152 ATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPH-------SFGVKMPPYF 204
Query: 111 SLDEKKDIADVVLDS 125
A+++ +
Sbjct: 205 DFAHFDAAAEILNEF 219
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel,
flavoprotein, mutant enzyme, oxidoreductase; HET: FMN;
1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A*
1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A*
1jrc_A* 1jqx_A*
Length = 311
Score = 217 bits (556), Expect = 2e-69
Identities = 58/233 (24%), Positives = 103/233 (44%), Gaps = 25/233 (10%)
Query: 101 PILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAK-DQ 159
PI IA S E + + +S D + +N+S PN +L +
Sbjct: 95 PIFFSIAGM-SAAENIAMLKKIQES--------DFSGITELNLSCPNVPGEPQLAYDFEA 145
Query: 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTV 219
+ LLK V + P+ VK+ P L +A+++ + + N+
Sbjct: 146 TEKLLKEVFTFFTK-------PLGVKLPPYFDLVHFDIMAEILNQFP--LTYVNSVNSIG 196
Query: 220 D------RYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKD 273
+ E + + K+ GG+ G ++ + + Y K ++ IIG GG+ +G+D
Sbjct: 197 NGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQD 256
Query: 274 AFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAH 326
AFE + GA+++QI T+ GP + RI ELEE++ ++GY S++ G
Sbjct: 257 AFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGKLK 309
Score = 66.8 bits (164), Expect = 9e-13
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 46 LLGILKFGDVAHYFVVNVSSPNTANLRKLQAK-DQLKHLLKTVVETRNQLALKPLPPILV 104
+L ++ D + +N+S PN +L + + LLK V + P+ V
Sbjct: 111 MLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTK-------PLGV 163
Query: 105 KIAPDLSLDEKKDIADVVL-DSVKGI 129
K+ P L +A+++ + +
Sbjct: 164 KLPPYFDLVHFDIMAEILNQFPLTYV 189
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine
biosynthesis, fumarate reductase, energy metabolism,
redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A
{Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A*
2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Length = 314
Score = 216 bits (553), Expect = 8e-69
Identities = 52/235 (22%), Positives = 98/235 (41%), Gaps = 25/235 (10%)
Query: 101 PILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAK-DQ 159
P+ + I+ + + V + + +N+S PN ++ +
Sbjct: 95 PLFLSIS-------GLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEA 147
Query: 160 LKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTV 219
++ L+ V P VK+ P + A V+ + + + +V
Sbjct: 148 MRTYLQQVSLAYG-------LPFGVKMPPYFDIAHFDTAAAVLNEFP--LVKFVTCVNSV 198
Query: 220 DRYEYLDAR-------YKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGK 272
+DA K+ GGL G+ + + ++ Y+ K + G GGV+SG+
Sbjct: 199 GNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDK-LVFGCGGVYSGE 257
Query: 273 DAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHK 327
DAF I AGAS+VQ+ T+ GP + TR++ EL E++ ++GY ++ + G
Sbjct: 258 DAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKGYRTLEEFRGRVKT 312
Score = 62.6 bits (153), Expect = 2e-11
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 53 GDVAHYFVVNVSSPNTANLRKLQAK-DQLKHLLKTVVETRNQLALKPLPPILVKIAPDLS 111
+ +N+S PN ++ + ++ L+ V P VK+ P
Sbjct: 120 QEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYG-------LPFGVKMPPYFD 172
Query: 112 LDEKKDIADVVLD 124
+ A V+ +
Sbjct: 173 IAHFDTAAAVLNE 185
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM
barrel, oxidoreductase; HET: MLY FMN; 2.40A
{Streptococcus mutans}
Length = 345
Score = 173 bits (441), Expect = 7e-52
Identities = 51/242 (21%), Positives = 91/242 (37%), Gaps = 21/242 (8%)
Query: 89 ETRNQLALKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNT 148
+ + S +E I +V S +N+S PN
Sbjct: 118 YVTELQKQPDSKNHFLSLVGM-SPEETHTILXMVEAS--------KYQGLVELNLSCPNV 168
Query: 149 ANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCK 208
++ + + + V T P+ +K+ P + A +
Sbjct: 169 PGXPQIAYDFETTDQILSEVFTYFTK------PLGIKLPPYFDIVHFDQAAAIFNXYP-- 220
Query: 209 VDGLIVSNTTVD----RYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIG 264
+ + N+ + E + K GG+ G+ ++ + + YK + IIG
Sbjct: 221 LTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIG 280
Query: 265 VGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGA 324
GGV +G+DAFE I GAS+VQI T+ GP + RI EL ++ ++GY ++ G
Sbjct: 281 TGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITKELXAIMTEKGYETLEDFRGK 340
Query: 325 AH 326
+
Sbjct: 341 LN 342
Score = 38.3 bits (89), Expect = 0.003
Identities = 12/102 (11%), Positives = 34/102 (33%), Gaps = 7/102 (6%)
Query: 46 LLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVK 105
+L +++ +N+S PN ++ + + + V T P+ +K
Sbjct: 146 ILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTK------PLGIK 199
Query: 106 IAPDLSLDEKKDIADVV-LDSVKGILKFGDVAHYFVVNVSSP 146
+ P + A + + + + + V+ +
Sbjct: 200 LPPYFDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETV 241
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 99.2 bits (248), Expect = 4e-24
Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 39/203 (19%)
Query: 141 VNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLP--PILVKIAPDLSLDEKKDI 198
+N+S PN + + D + +V+ A K + P+ VK++P+++ DI
Sbjct: 131 LNISCPNVKHGGQAFGTD--PEVAAALVK-----ACKAVSKVPLYVKLSPNVT-----DI 178
Query: 199 ADVVLDS-KCKVDGLIVSNT----TVDRYEYLDARY---KEETGGLSGEP-----LRNKS 245
+ DGL + NT D L R TGGLSG L+
Sbjct: 179 VPIAKAVEAAGADGLTMINTLMGVRFD----LKTRQPILANITGGLSGPAIKPVALKL-- 232
Query: 246 TELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSE 305
I ++ + +PIIG+GGV + +D E AGAS V + T+ + P + +I +
Sbjct: 233 ---IHQVAQDVD--IPIIGMGGVANAQDVLEMYMAGASAVAVGTA-NFADPFVCPKIIDK 286
Query: 306 LEELLQKEGYNSVSQAVGAAHKS 328
L EL+ + S+ + +
Sbjct: 287 LPELMDQYRIESLESLIQEVKEG 309
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 3e-10
Identities = 54/396 (13%), Positives = 115/396 (29%), Gaps = 139/396 (35%)
Query: 44 FWL-LG-------ILK-----FGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLL------ 84
FWL L +L+ + + + LR + +L+ LL
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 85 ----------------------KTVVETRNQ------LALKPLPPILVKIAPDLSLDEKK 116
K ++ TR + A L + L+ DE K
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 117 DIADVVLDSVKGILKFGDVA------HYFVVNV------SSPNTA-NLRKLQAKDQLKHL 163
+ LD + D+ + +++ T N + + D+L +
Sbjct: 305 SLLLKYLD-----CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN-CDKLTTI 358
Query: 164 LKTVV------ETRN---QLAVKP----LPPILVKI--------APDLSLDE-------K 195
+++ + E R +L+V P +P IL+ + + +++ +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 196 KD-------IADVVLDSKCKVDGLI-VSNTTVDRYEYLDARYKEETGGLSGEPLRN---- 243
K I + L+ K K++ + + VD Y + L L
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD---DLIPPYLDQYFYS 475
Query: 244 ------------KSTELISEMY--------KLTKGKLPIIGVGGVFSGKDAFEKIKAGAS 283
+ L ++ K+ G + + +++K
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL---NTLQQLK---- 528
Query: 284 LVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVS 319
Y ++ P R+ + + + L K N +
Sbjct: 529 ---FYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Score = 44.5 bits (104), Expect = 3e-05
Identities = 29/224 (12%), Positives = 66/224 (29%), Gaps = 71/224 (31%)
Query: 109 DLSLDEK----KDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLL 164
D E KDI V D+ DV + + +K+++ H++
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM------------PKSILSKEEIDHII 55
Query: 165 KTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEY 224
L L L +++++ ++ +++ Y++
Sbjct: 56 M---SKDAVSGTLRLFWTL--------LSKQEEMVQKFVEEVLRIN-----------YKF 93
Query: 225 LDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASL 284
L + K E + +++ MY + +L ++ F K
Sbjct: 94 LMSPIKTE----------QRQPSMMTRMYIEQRDRL--------YNDNQVFAKY------ 129
Query: 285 VQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAHKS 328
V +++ L E L+ + V + K+
Sbjct: 130 ------NVSR-LQPYLKLRQALLE-LRPAKNVLI-DGVLGSGKT 164
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 58.7 bits (142), Expect = 9e-10
Identities = 30/154 (19%), Positives = 66/154 (42%), Gaps = 14/154 (9%)
Query: 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNT-------TVDRYEY--LDARYKE 231
P K+ P+++ + IA + DG+ +NT D + + A +
Sbjct: 705 PFFAKLTPNVT--DIVSIARAAKEGG--ADGVTATNTVSGLMGLKADGTPWPAVGAGKRT 760
Query: 232 ETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291
GG+SG +R + ++ + + G PI+ GG+ S + + + +GAS++Q+ ++
Sbjct: 761 TYGGVSGTAIRPIALRAVTTIARALPG-FPILATGGIDSAESGLQFLHSGASVLQVCSAV 819
Query: 292 VYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAA 325
++ + L+ LL + + G +
Sbjct: 820 QNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQS 853
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 2e-07
Identities = 49/285 (17%), Positives = 86/285 (30%), Gaps = 95/285 (33%)
Query: 37 MRAWVLQ-FWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLA 95
M A+ + L G + H +V P + Q ++Q
Sbjct: 1 MDAYSTRPL----TLSHGSLEHVLLV----PTASFFIASQLQEQF--------------- 37
Query: 96 LKPLPPILVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHY--FVVNVSSPNTANLRK 153
K LP A D DE A+ L V + +V ++ P+
Sbjct: 38 NKILPEPTEGFAAD---DEPTTPAE---------L----VGKFLGYVSSLVEPSKVG--- 78
Query: 154 LQAKDQLKHLLKTVVE--TRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDG 211
Q +L + L DI + + D
Sbjct: 79 -----QFDQVLNLCLTEFENCYLE-------------------GNDIHALAAKLLQENDT 114
Query: 212 LIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYK-LTKGKLPIIGVGGVFS 270
+V + + Y+ AR ++ P KS S +++ + +G ++ + F
Sbjct: 115 TLVKTKELIKN-YITAR------IMAKRPFDKKSN---SALFRAVGEGNAQLVAI---FG 161
Query: 271 G----KDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQ 311
G D FE+++ L Q Y V L+ L EL++
Sbjct: 162 GQGNTDDYFEELR---DLYQTYHVLV---GDLIKFSAETLSELIR 200
Score = 41.2 bits (96), Expect = 5e-04
Identities = 54/327 (16%), Positives = 90/327 (27%), Gaps = 116/327 (35%)
Query: 53 GDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAP---- 108
G+ YF LR L L+ +++ + L L +
Sbjct: 164 GNTDDYF---------EELRDLY--QTYHVLVGDLIKFSAET-LSELIRTTLDAEKVFTQ 211
Query: 109 --DLS--LDEKKDIADV-VLDSVK------GILKFGDVAHYFVV-NVSSPNTANLRKLQA 156
++ L+ + D L S+ G+++ AHY V + LR
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL---AHYVVTAKLLGFTPGELR---- 264
Query: 157 KDQLKHLL---KTVV-----------ETRNQLAVKPLPPILVKI-------APDLSLDEK 195
LK + +V E+ K + +L I P+ SL
Sbjct: 265 -SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT-VLFFIGVRCYEAYPNTSLP-- 320
Query: 196 KDIADVVLDSKCKVDG-----LIVSNTTVDRYEYLDARYKEETGGLSGEP-----LRNKS 245
++ DS +G L +SN T E + + L L N +
Sbjct: 321 ---PSILEDSLENNEGVPSPMLSISNLT---QEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 246 TELI-----SEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ-----------IYT 289
L+ +Y L K KA + L Q
Sbjct: 375 KNLVVSGPPQSLYGLNL----------------TLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 290 SFV-----YHGP---PLVTRIKSELEE 308
F+ +H P I +L +
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVK 445
Score = 29.2 bits (65), Expect = 2.4
Identities = 22/117 (18%), Positives = 32/117 (27%), Gaps = 44/117 (37%)
Query: 230 KEET---GGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQ 286
T GG G+ +R + +I E GK EKI +
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIV---------------DGKLKTEKIFKEINEHS 1714
Query: 287 IYTSFVYHGPPLVTRIKSELE-----------------ELLQKEGYNSVSQAVGAAH 326
TS+ + K L E L+ +G + A A H
Sbjct: 1715 --TSYTFRSE------KGLLSATQFTQPALTLMEKAAFEDLKSKG-LIPADATFAGH 1762
Score = 28.1 bits (62), Expect = 6.0
Identities = 19/134 (14%), Positives = 47/134 (35%), Gaps = 46/134 (34%)
Query: 183 LVKIAPDLSLDEKKDIADVV------LDSKCKVD--------------GLIVSNTTVDRY 222
L +A +S++ + +VV + D G + ++ + +
Sbjct: 1770 LASLADVMSIE---SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 223 EYLDARYKEETGGL---------------SGEPLRNKSTELISEMYKLTK-GKLPIIGVG 266
+Y+ R + TG L +G+ ++ + ++ + K K+ II +
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQYVAAGD---LRALDTVTNVLNFIKLQKIDIIELQ 1883
Query: 267 GVFSGKDAFEKIKA 280
S E+++
Sbjct: 1884 KSLS----LEEVEG 1893
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family,
OYE-like FMN-binding domain, TIM B oxidoreductase; HET:
PGE; 1.65A {Staphylococcus aureus}
Length = 419
Score = 40.0 bits (94), Expect = 7e-04
Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 22/141 (15%)
Query: 181 PILVKIAP--------DLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEE 232
+ + P ++DE + D V+D + L +++ Y+ +
Sbjct: 244 ILGFRATPEETRGSDLGYTIDEFNQLIDWVMD-VSNIQYLAIASWGRHIYQNTSRTPGDH 302
Query: 233 TGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292
G + + G++P+I GG+ S + A A +V + + FV
Sbjct: 303 FGRPVNQIVYEH-----------LAGRIPLIASGGINSPESA-LDALQHADMVGMSSPFV 350
Query: 293 YHGPPLVTRIKSELEELLQKE 313
P V ++ + + E
Sbjct: 351 TE-PDFVHKLAEQRPHDINLE 370
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 37.2 bits (86), Expect = 0.007
Identities = 31/196 (15%), Positives = 58/196 (29%), Gaps = 27/196 (13%)
Query: 71 LRKL-QAKDQLKHLLKTVVETRNQLALK--PLPPILVKIAPD-LSLDEKKDIADVVLDSV 126
L+KL + Q+K L ++ + +L +K L ++ D + + K+ A + +
Sbjct: 1926 LKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQL 1985
Query: 127 ----KGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPI 182
K I A+ + Q ++ L E +
Sbjct: 1986 DVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIA 2045
Query: 183 LVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLR 242
K + E + I K KVD R L+ E R
Sbjct: 2046 TYKEEYATLIRETEQIKTESSKVKNKVD-----------------RSIALLDNLNSERGR 2088
Query: 243 --NKSTELISEMYKLT 256
+S ++M +
Sbjct: 2089 WEQQSENFNTQMSTVV 2104
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces
ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Length = 286
Score = 35.6 bits (81), Expect = 0.017
Identities = 16/128 (12%), Positives = 32/128 (25%), Gaps = 10/128 (7%)
Query: 183 LVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPL- 241
P E + + G ++ V + G +
Sbjct: 145 FPGRIPREEWPELLLTVALTFGEDPRT-GDLLGTVPVSTASTEEIDRYLHVARAFGFHMV 203
Query: 242 ------RNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHG 295
+ E++ K + G V SG+ E + +GA V +
Sbjct: 204 YLYSRNEHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGAL--EQ 261
Query: 296 PPLVTRIK 303
P + +
Sbjct: 262 PDWRSALA 269
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 33.6 bits (77), Expect = 0.079
Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 21/151 (13%)
Query: 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN---TTVDRYEYLDARYKEETGGLS 237
P++VK + A + + + T + E L + +
Sbjct: 180 PVIVKE-----VGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSW 234
Query: 238 GEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH--- 294
G + ++E+ + +I GG+ D + I GAS + F+
Sbjct: 235 GIS----TAASLAEI-RSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTD 289
Query: 295 -GPP----LVTRIKSELEELLQKEGYNSVSQ 320
G + I EL+ ++ G +++
Sbjct: 290 SGEEGLLEEIQLILEELKLIMTVLGARTIAD 320
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 32.7 bits (75), Expect = 0.14
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 259 KLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292
+P++ GG+ G + AGA Q+ T+F+
Sbjct: 208 DIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFL 241
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural
genomics, riken structural genomics/P initiative, RSGI;
HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1
PDB: 1vcg_A* 3dh7_A*
Length = 332
Score = 32.2 bits (73), Expect = 0.18
Identities = 38/229 (16%), Positives = 78/229 (34%), Gaps = 26/229 (11%)
Query: 103 LVKIAPDLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKH 162
+ K+AP L +A + +L+ ++ + + D
Sbjct: 111 VRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTD---- 166
Query: 163 LLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN---TTV 219
+ +VE +L P P ++ ++ LS + + D + + V+ T+
Sbjct: 167 -FRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRD------LPLAAVDVAGAGGTSW 219
Query: 220 DRYEYLDARYKEETGGLSGEPLRNKST-ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKI 278
R E + L + T I E+ ++ LP++ GGV++G D + +
Sbjct: 220 ARVEEWVRFGEVRHPELCEIGI---PTARAILEVREV-LPHLPLVASGGVYTGTDGAKAL 275
Query: 279 KAGASLVQIYTSFVYH---GPP----LVTRIKSELEELLQKEGYNSVSQ 320
GA L+ + + G + EL L G + +
Sbjct: 276 ALGADLLAVARPLLRPALEGAERVAAWIGDYLEELRTALFAIGARNPKE 324
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 32.1 bits (73), Expect = 0.25
Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 14/117 (11%)
Query: 181 PILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN---TTVDRYEYLDARYKEETGGLS 237
P ++K + D+ + V + +S T+ E +
Sbjct: 208 PFILK-----EVGFGMDVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQW- 261
Query: 238 GEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH 294
G+ +++ L K+ I+ GG+ D + + GA V + + +
Sbjct: 262 GQTT----AQVLLNAQPL-MDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLEL 313
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 31.4 bits (71), Expect = 0.34
Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 14/125 (11%)
Query: 209 VDGLIVSN---TTVDRYEYLDARYKEETGGLSGEPLRN---KSTELISEMYKLTKGKLPI 262
+ S T E + + S + + + I E+ +
Sbjct: 212 IKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPD-SFL 270
Query: 263 IGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH---GPP----LVTRIKSELEELLQKEGY 315
+G GG+ SG DA + I GA + + + G +I EL+ + G
Sbjct: 271 VGSGGIRSGLDAAKAIALGADIAGMALPVLKSAIEGKESLEQFFRKIIFELKAAMMLTGS 330
Query: 316 NSVSQ 320
V
Sbjct: 331 KDVDA 335
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 0.42
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 188 PDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDR 221
P + + DVV C + GL++S+ VD
Sbjct: 32 PKIVERFSE--GDVV----CALCGLVLSDKLVDT 59
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 29.3 bits (65), Expect = 1.6
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 249 ISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287
+ + L +I G S A E I+ GA V +
Sbjct: 171 LPLVKALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTV 209
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.7
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 21/44 (47%)
Query: 70 NLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAPDLSLD 113
L+KLQA +LK AP L++
Sbjct: 21 ALKKLQA------------------SLKLYAD---DSAPALAIK 43
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Length = 326
Score = 29.2 bits (66), Expect = 1.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 259 KLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292
+P+I GG+ G+ GA VQ+ T FV
Sbjct: 176 NIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFV 209
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 28.7 bits (65), Expect = 3.1
Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 47/155 (30%)
Query: 181 PILVK--IAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGG--L 236
P+ VK P+ D + K G+ VSN G L
Sbjct: 231 PVFVKGIQHPE----------DADMAIKRGASGIWVSNH----------------GARQL 264
Query: 237 SGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKA---GASLVQIYTSFVY 293
P S + + + + ++PI+ GV G+ KA GA +V + ++
Sbjct: 265 YEAP---GSFDTLPAIAERVNKRVPIVFDSGVRRGEHVA---KALASGADVVALGRPVLF 318
Query: 294 ----HGPPLVTR----IKSELEELLQKEGYNSVSQ 320
G + +L ++Q G +V
Sbjct: 319 GLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVED 353
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote
structure initiative, NEW YORK SGX research center for
STRU genomics; 1.88A {Caenorhabditis elegans}
Length = 481
Score = 28.3 bits (64), Expect = 4.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 262 IIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKS-EL 306
+IG G+ + E ++A A LV+IY ++V + T S EL
Sbjct: 186 LIG------GESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSEL 225
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 27.7 bits (61), Expect = 4.2
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 252 MYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQI 287
+ +L+ +I G + A I+ GA V +
Sbjct: 174 VTQLSHAGCRVIAEGRYNTPALAANAIEHGAWAVTV 209
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics,
oxidoreductase, flavoprotein; HET: FMN; 1.70A
{Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 27.7 bits (62), Expect = 5.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 259 KLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292
+P+I GG+ G+ A GA VQ+ T FV
Sbjct: 162 SIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFV 195
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S
genomics consortium, SGC, oxidoreductase; HET: NAD UPG;
2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A*
3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Length = 467
Score = 27.9 bits (63), Expect = 5.8
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 262 IIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKS-EL 306
+IG G + E +A +L +Y +V L T S EL
Sbjct: 180 LIG------GDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSEL 219
>3mst_A Putative nitrate transport protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.35A {Thermoplasma
volcanium}
Length = 244
Score = 27.5 bits (60), Expect = 6.3
Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 14/105 (13%)
Query: 98 PLPPILVKIAPDLSLD-EKKDIADVVLDSVKGILKFGDVAHYFVV--------NVSSPNT 148
PL I ++ + + DVVLDS+ + K+G V + SS
Sbjct: 33 PLLVIEEELPFRIHNICSETGKFDVVLDSITNMPKYGLKIFAGVRIDMYSILGDESSGRI 92
Query: 149 ANLRKLQAKDQLKHLL-----KTVVETRNQLAVKPLPPILVKIAP 188
LRK D +L V+ +K +
Sbjct: 93 YTLRKGTLADFNARILAYYDKAQVINADGDTCIKMANEGYSALVG 137
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 27.2 bits (61), Expect = 8.4
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 12/78 (15%)
Query: 119 ADVVLDSVKG--------ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVET 170
D+V D++ G +K VV+ T L L K + T+
Sbjct: 217 FDLVYDTLGGPVLDASFSAVKRFGH----VVSCLGWGTHKLAPLSFKQATYSGVFTLHTL 272
Query: 171 RNQLAVKPLPPILVKIAP 188
+ +L +
Sbjct: 273 LANEGLAHFGEMLREADA 290
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.384
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,902,381
Number of extensions: 298655
Number of successful extensions: 856
Number of sequences better than 10.0: 1
Number of HSP's gapped: 814
Number of HSP's successfully gapped: 64
Length of query: 328
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 234
Effective length of database: 4,077,219
Effective search space: 954069246
Effective search space used: 954069246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)