RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5880
(328 letters)
>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase
{Plasmodium falciparum [TaxId: 5833]}
Length = 409
Score = 193 bits (490), Expect = 5e-59
Identities = 89/278 (32%), Positives = 136/278 (48%), Gaps = 40/278 (14%)
Query: 49 ILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLALKPLPPILVKIAP 108
I K G A Y +NVSSPNT LR Q +LK+++ +V E + L +
Sbjct: 172 INKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNE 231
Query: 109 DLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVV 168
D + EKK+ + + K +
Sbjct: 232 DNKIVEKKNNFNKNNSHMMKDAKDNFLWF------------------------------- 260
Query: 169 ETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDAR 228
K P + VK+APDL+ ++KK+IADV+L++ +I+SNTT +
Sbjct: 261 -----NTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDG--MIISNTTTQINDI--KS 311
Query: 229 YKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIY 288
++ + GG+SG L++ ST+ I EMY T ++PII GG+FSG DA EKI+AGAS+ Q+Y
Sbjct: 312 FENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLY 371
Query: 289 TSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAAH 326
+ V++G +IK EL LL + GY ++ +A+G H
Sbjct: 372 SCLVFNGMKSAVQIKRELNHLLYQRGYYNLKEAIGRKH 409
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 367
Score = 163 bits (412), Expect = 5e-48
Identities = 119/242 (49%), Positives = 162/242 (66%), Gaps = 3/242 (1%)
Query: 87 VVETRNQLALKPLPPILVKIAP-DLSLDEKKDIADVVLDSVKGILKFGDVAHYFVVNVSS 145
VVE R + + + P ++L + K D D +G+ G +A Y VVNVSS
Sbjct: 127 VVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSS 186
Query: 146 PNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKDIADVVLDS 205
PNTA LR LQ K +L+ LL V++ R+ L P +LVKIAPDL+ +K+DIA VV +
Sbjct: 187 PNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKE- 245
Query: 206 KCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGV 265
+DGLIV+NTTV R L + ETGGLSG+PLR+ ST+ I EMY LT+G++PIIGV
Sbjct: 246 -LGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGV 304
Query: 266 GGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEGYNSVSQAVGAA 325
GGV SG+DA EKI+AGASLVQ+YT+ + GPP+V ++K ELE LL+++G+ V+ A+GA
Sbjct: 305 GGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGAD 364
Query: 326 HK 327
H+
Sbjct: 365 HR 366
>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli
[TaxId: 562]}
Length = 336
Score = 153 bits (388), Expect = 8e-45
Identities = 82/189 (43%), Positives = 111/189 (58%), Gaps = 4/189 (2%)
Query: 120 DVVLDSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVK-- 177
D + + K A Y +N+SSPNT LR LQ + L LL + +N L
Sbjct: 150 QGKDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHH 209
Query: 178 PLPPILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLS 237
PI VKIAPDLS +E +AD + + +DG+I +NTT+DR + ++TGGLS
Sbjct: 210 KYVPIAVKIAPDLSEEELIQVADSL--VRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLS 267
Query: 238 GEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPP 297
G PL+ KSTE+I + G+LPIIGVGG+ S A EKI AGASLVQIY+ F++ GPP
Sbjct: 268 GRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPP 327
Query: 298 LVTRIKSEL 306
L+ I + +
Sbjct: 328 LIKEIVTHI 336
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 142 bits (358), Expect = 1e-40
Identities = 36/189 (19%), Positives = 75/189 (39%), Gaps = 16/189 (8%)
Query: 136 AHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEK 195
A +N+S P+ R + L + + AV+ P K+ P++ +
Sbjct: 130 ADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQI--PFFAKLTPNV--TDI 185
Query: 196 KDIADVVLDSKCKVDGLIVSNTTVDRY---------EYLDARYKEETGGLSGEPLRNKST 246
IA + DG+ +NT + A + GG+SG +R +
Sbjct: 186 VSIARAAKE--GGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIAL 243
Query: 247 ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306
++ + + G PI+ GG+ S + + + +GAS++Q+ ++ ++ + L
Sbjct: 244 RAVTTIARALPG-FPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGL 302
Query: 307 EELLQKEGY 315
+ LL +
Sbjct: 303 KALLYLKSI 311
Score = 28.8 bits (63), Expect = 0.80
Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 6/88 (6%)
Query: 22 WGCTPTHNMLSSFARMRAWVLQFWLLGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLK 81
+ + W+ A +N+S P+ R +
Sbjct: 100 FPDNIVIASIMCSYNKNDWMELSRKA----EASGADALELNLSCPHGMGERGMGLACGQD 155
Query: 82 HLLKTVVETRNQLALKPLPPILVKIAPD 109
L + + A++ P K+ P+
Sbjct: 156 PELVRNICRWVRQAVQ--IPFFAKLTPN 181
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma
brucei [TaxId: 5691]}
Length = 312
Score = 129 bits (324), Expect = 1e-35
Identities = 46/208 (22%), Positives = 86/208 (41%), Gaps = 12/208 (5%)
Query: 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPIL 183
K + + +N+S PN +T ++ ++ P
Sbjct: 109 MVKKLVPITKEKGTILELNLSCPNVPGKP---QVGYDFDTTRTYLQKVSEAYG---LPFG 162
Query: 184 VKIAPDLSLDEKKDIADVVLDSKCK-----VDGLIVSNTTVDRYEYLDARYKEETGGLSG 238
VK+ P + A V+ D V+ + E + + K+ GGL G
Sbjct: 163 VKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLGG 222
Query: 239 EPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPL 298
+ + + ++ ++ K + G GGV+SG++AF I AGAS+VQ+ T+ GP +
Sbjct: 223 KYVLPTALANVNAFFRRCPDK-LVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEGPII 281
Query: 299 VTRIKSELEELLQKEGYNSVSQAVGAAH 326
R+ EL+E++ +GY ++ + G
Sbjct: 282 FARLNKELQEIMTNKGYKTLDEFRGRVK 309
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme A [TaxId: 1358]}
Length = 311
Score = 127 bits (318), Expect = 8e-35
Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 16/204 (7%)
Query: 130 LKFGDVAHYFVVNVSSPNTANLRKL-QAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAP 188
++ D + +N+S PN +L + + LLK V + P+ VK+ P
Sbjct: 115 IQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTK-------PLGVKLPP 167
Query: 189 DLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRY------EYLDARYKEETGGLSGEPLR 242
L +A+++ + N+ + E + + K+ GG+ G ++
Sbjct: 168 YFDLVHFDIMAEILNQFPL--TYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIK 225
Query: 243 NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRI 302
+ + Y K ++ IIG GG+ +G+DAFE + GA+++QI T+ GP + RI
Sbjct: 226 PTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRI 285
Query: 303 KSELEELLQKEGYNSVSQAVGAAH 326
ELEE++ ++GY S++ G
Sbjct: 286 IKELEEIMNQKGYQSIADFHGKLK 309
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 107 bits (268), Expect = 1e-27
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 15/194 (7%)
Query: 138 YFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPILVKIAPDLSLDEKKD 197
+N+S PN + + D A K + + + + ++ +
Sbjct: 128 AIELNISCPNVKHGGQAFGTDPEVAAALV-------KACKAVSKVPLYVKLSPNVTDIVP 180
Query: 198 IADVVLDSKCKVDGLIVSNTTVDRYEYLDAR---YKEETGGLSGEPLRNKSTELISEMYK 254
IA V DGL + NT + L R TGGLSG ++ + +LI ++ +
Sbjct: 181 IAKAVEA--AGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQ 238
Query: 255 LTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSELEELLQKEG 314
+PIIG+GGV + +D E AGAS V + T+ + P + +I +L EL+ +
Sbjct: 239 --DVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTAN-FADPFVCPKIIDKLPELMDQYR 295
Query: 315 YNSVSQAVGAAHKS 328
S+ + +
Sbjct: 296 IESLESLIQEVKEG 309
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 47.9 bits (113), Expect = 6e-07
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 258 GKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYH---GPPLVTR----IKSELEELL 310
LP++ GGV++G D + + GA L+ + + G V EL L
Sbjct: 233 PHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPALEGAERVAAWIGDYLEELRTAL 292
Query: 311 QKEGYNSVSQAVGAAHK 327
G + +A G +
Sbjct: 293 FAIGARNPKEARGRVER 309
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 40.2 bits (93), Expect = 1e-04
Identities = 18/132 (13%), Positives = 42/132 (31%), Gaps = 8/132 (6%)
Query: 182 ILVKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEY-----LDARYKEETGGL 236
++ + DIA + K K ++ E + T
Sbjct: 101 VIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSG 160
Query: 237 SGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGP 296
R ++ ++ + L K + +I G + S ++A + G + + + + P
Sbjct: 161 YTPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT--RP 218
Query: 297 PLVT-RIKSELE 307
+ R L+
Sbjct: 219 KEIAERFIEALK 230
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 39.0 bits (90), Expect = 4e-04
Identities = 24/208 (11%), Positives = 65/208 (31%), Gaps = 25/208 (12%)
Query: 124 DSVKGILKFGDVAHYFVVNVSSPNTANLRKLQAKDQLKHLLKTVVETRNQLAVKPLPPIL 183
+ + ++ + + + + LK + + +++ +P I+
Sbjct: 107 ATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRV---SVPVIV 163
Query: 184 VKIAPDLSLDEKKDIADVVLDSKCKVDGLIVSN---TTVDRYEYLDARYKEETGGLSGEP 240
++ +S + + + + T + E L + + G
Sbjct: 164 KEVGFGMSKASAGKLYE------AGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGIS 217
Query: 241 LRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY----HGP 296
+ ++E+ +I GG+ D + I GAS + F+ G
Sbjct: 218 ----TAASLAEIRSE-FPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGE 272
Query: 297 PLVTR----IKSELEELLQKEGYNSVSQ 320
+ I EL+ ++ G +++
Sbjct: 273 EGLLEEIQLILEELKLIMTVLGARTIAD 300
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 349
Score = 37.2 bits (85), Expect = 0.002
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 247 ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY----HGPPLVTR- 301
+ + E+ KGK+ + GGV +G D + + GA + + ++ G V
Sbjct: 260 DALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEV 319
Query: 302 ---IKSELEELLQKEGYNSVSQ 320
+ +EL + G SV++
Sbjct: 320 LDILTAELHRCMTLSGCQSVAE 341
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 35.7 bits (81), Expect = 0.007
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 257 KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY----HGPPLVTR----IKSELEE 308
K KL + GGV G D + + GA V + F+Y +G V + ++ E+E
Sbjct: 304 KDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEM 363
Query: 309 LLQKEGYNSVSQ 320
++ G S+++
Sbjct: 364 SMRLLGVTSIAE 375
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 34.9 bits (80), Expect = 0.007
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 243 NKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGA------SLVQIYTSFVYH 294
+ E + + KG++ + GG+ + A I+AGA S + I F+
Sbjct: 159 GTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTSSGISIAEEFLKR 216
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 34.1 bits (77), Expect = 0.013
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 257 KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVT-RIKSELE 307
+I G V + + G + + P +T R +E
Sbjct: 173 SVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR--PKEITKRFVQVME 222
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 359
Score = 33.0 bits (74), Expect = 0.043
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 248 LISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY----HGPPLVTR-- 301
+ E+ K +G++P+ GGV G D F+ + GA+ V I V+ G V +
Sbjct: 268 ALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVL 327
Query: 302 --IKSELEELLQKEGYNSVSQ 320
++ E E + G S+ +
Sbjct: 328 QMMRDEFELTMALSGCRSLKE 348
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 31.9 bits (71), Expect = 0.097
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 259 KLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIK 303
K P++GVG + E + G A ++ + P L +++
Sbjct: 291 KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIAD-PFLPQKVE 335
>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus
subtilis [TaxId: 1423]}
Length = 337
Score = 31.5 bits (70), Expect = 0.12
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 259 KLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIKSELEE 308
+ VG + G A E ++ G A L+ I + P +L
Sbjct: 276 DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRD-PFFARTAAKQLNT 325
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 31.1 bits (70), Expect = 0.14
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 247 ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLV 285
E + M + ++ + GG+ + +DA + I GA +
Sbjct: 196 EDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRI 234
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 330
Score = 31.0 bits (69), Expect = 0.17
Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 259 KLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPPLVTRIKSELEE 308
LP++ + + A + + G A +V + F+ L+++ +S +
Sbjct: 280 SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLAD-AELLSKAQSGRAD 329
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 353
Score = 30.7 bits (68), Expect = 0.23
Identities = 17/133 (12%), Positives = 42/133 (31%), Gaps = 8/133 (6%)
Query: 196 KDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKL 255
+ + + K+ + + + G L + + +
Sbjct: 212 EALRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSV 271
Query: 256 TKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY----HGPPLVTR----IKSELE 307
K P++ G G D + + GA V + + +Y G V +K++++
Sbjct: 272 AKTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLLKADID 331
Query: 308 ELLQKEGYNSVSQ 320
L + G ++
Sbjct: 332 RTLAQIGCPDITS 344
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 30.3 bits (68), Expect = 0.24
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 246 TELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLV 285
E ++ + ++ +G+ + GG+ + A +KAGAS +
Sbjct: 162 LEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRL 201
>d1g26a_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 27.2 bits (60), Expect = 0.27
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 5 DESTCSRILSRVFRSGEWGCTP 26
D TC R+ SG WGC P
Sbjct: 12 DGYTCCRL-----PSGAWGCCP 28
>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast
(Saccharomyces pastorianus) [TaxId: 27292]}
Length = 399
Score = 30.3 bits (67), Expect = 0.35
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 6/130 (4%)
Query: 181 PILVKIAPDLSLDEKKDIADVVL--DSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSG 238
+ ++++P + A+ + L R ++ T
Sbjct: 239 KVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLT 298
Query: 239 EPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAG-ASLVQIYTSFVYHGPP 297
E +Y + KG P+I G + + +L+ F+ + P
Sbjct: 299 EGEGEYEGGSNDFVYSIWKG--PVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISN-PD 355
Query: 298 LVTRIKSELE 307
LV R++ L
Sbjct: 356 LVDRLEKGLP 365
>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis
[TaxId: 1423]}
Length = 229
Score = 29.7 bits (66), Expect = 0.35
Identities = 14/115 (12%), Positives = 37/115 (32%), Gaps = 12/115 (10%)
Query: 185 KIAPDLSLDEKKDIADVVLDSKCKVDGLIVSNTTVDRYEYLDARYKEETGGLSGEPL--- 241
+ +S++E + + CK L ++ ++ D L P+
Sbjct: 104 EYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNM---DDIVAYARVSELLQLPIFYL 160
Query: 242 ----RNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFV 292
E + + + + G GG+ + A ++ A ++ + +
Sbjct: 161 EYSGVLGDIEAVKKTKAVLETSTLFYG-GGIKDAETA-KQYAEHADVIVVGNAVY 213
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 28.4 bits (63), Expect = 1.0
Identities = 9/49 (18%), Positives = 16/49 (32%)
Query: 237 SGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLV 285
+ + + GG+ SG DA + AGA ++
Sbjct: 170 GVYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGADII 218
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 28.4 bits (63), Expect = 1.4
Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 35/105 (33%)
Query: 257 KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVY---------------------HG 295
+ ++ + GG+ +G+D GA I T+ +
Sbjct: 640 RHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQD 699
Query: 296 PPLVTR--------------IKSELEELLQKEGYNSVSQAVGAAH 326
L + + E+ E+L G+ S+++ +G
Sbjct: 700 DKLRQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVIGRTD 744
>d1aoya_ a.4.5.3 (A:) Arginine repressor (ArgR), N-terminal
DNA-binding domain {Escherichia coli [TaxId: 562]}
Length = 78
Score = 25.6 bits (56), Expect = 2.5
Identities = 5/19 (26%), Positives = 15/19 (78%)
Query: 303 KSELEELLQKEGYNSVSQA 321
+ E+ LQ++G+++++Q+
Sbjct: 26 QGEIVAALQEQGFDNINQS 44
>d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 226
Score = 26.2 bits (57), Expect = 5.8
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 247 ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGA 282
I+ K +L + GG+ + + A + A
Sbjct: 172 AAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIG 207
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 388
Score = 25.7 bits (56), Expect = 8.2
Identities = 7/84 (8%), Positives = 23/84 (27%)
Query: 211 GLIVSNTTVDRYEYLDARYKEETGGLSGEPLRNKSTELISEMYKLTKGKLPIIGVGGVFS 270
+ V N ++ + + E S + + + + + S
Sbjct: 73 TMDVINKDHQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRFDDLRNSLERSS 132
Query: 271 GKDAFEKIKAGASLVQIYTSFVYH 294
++ ++ GA ++
Sbjct: 133 ARETTMRVAVGAVAKRLLAELDME 156
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 25.7 bits (56), Expect = 8.8
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 257 KGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSF 291
+ ++ + GG+ +G D GA +
Sbjct: 667 RDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIA 701
>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 252
Score = 25.4 bits (55), Expect = 9.7
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 247 ELISEMYKLTKGKLPIIGVGGVFSGKDAFEKIKAGASLVQIYTSFVYHGPPLVTRIKSEL 306
ELI + + +P+I GG + +E AGA V + F + + +++
Sbjct: 187 ELIRRVADSVR--IPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSI-----AQV 239
Query: 307 EELLQKEGYN 316
+ L++ G
Sbjct: 240 KRYLKERGVE 249
>d2aj7a1 b.158.1.1 (A:1-148) Hypothetical protein BH3618 {Bacillus
halodurans [TaxId: 86665]}
Length = 148
Score = 25.1 bits (55), Expect = 9.8
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 46 LLGILKFGDVAHYFVVNVSSPN---TANLR 72
L I DVA + ++ V P T NL+
Sbjct: 82 QLNITNENDVAIFSLLTVKEPFSETTVNLQ 111
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.384
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,166,746
Number of extensions: 53976
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 40
Length of query: 328
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,226,816
Effective search space: 296889472
Effective search space used: 296889472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)