BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5884
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 36 PVSLTVNLNDINDNAPRL------PMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYS 89
P + + DINDNAP +P + I G + + +A D G +A++ YS
Sbjct: 89 PSEFIIKVQDINDNAPEFLNGPYHATVPEMSI-LGTSVTNVTATDADDPVYGNSAKLVYS 147
Query: 90 IYHVSNTGLHKFRIDPRSGVIETTGKLI---AGEQYSITVQATDTGGKS---SQTIVEVS 143
I G F I+P + +I+T + A E+Y + +QA D GG S S T
Sbjct: 148 ILE----GQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTV 203
Query: 144 VVPGPNTRSPVFQQNTYDVNVSEGASINSTVATI 177
+ N P F Q+ Y +V E + + + +
Sbjct: 204 TLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRV 237
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 45 DINDNAPRLP-----MIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLH 99
D+NDN P+ P + G A I +++A D D+G NA+ +Y I T L
Sbjct: 207 DVNDNPPKFAQSLYHFSVPEDVVLGTA---IGRVKANDQDIGENAQSSYDIIDGDGTALF 263
Query: 100 KFRIDPRS--GVIETTGKLI--AGEQYSITVQA 128
+ D ++ GVI L + Y++ V+A
Sbjct: 264 EITSDAQAQDGVIRLRKPLDFETKKSYTLKVEA 296
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 37/204 (18%)
Query: 1 YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQ 60
+++V++ LDR+ + K+ A + G+ P+ +T+N+ D NDN P+
Sbjct: 214 WMLVTRP-LDREEYD--KYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQ----D 266
Query: 61 IQAGEARR------QIVKIEATDNDLGV---NAEITYSIYH------VSNTGLHKFRIDP 105
+ G R Q++ + ATD D + N ++YSI + N F I+
Sbjct: 267 VFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNL----FTINR 322
Query: 106 RSGVIETTGKLIAGE---QYSITVQATDTGGK----SSQTIVEVSVVPGPNTRSPVFQQN 158
+GVI G + E +Y++TVQATD G + I++++ N +P+F
Sbjct: 323 ETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT---DANDNAPIFDPK 379
Query: 159 TYDVNVSEGASINSTVATITVSRL 182
TY V E I V ++V+ L
Sbjct: 380 TYTALVPEN-EIGFEVQRLSVTDL 402
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 29/200 (14%)
Query: 1 YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQ 60
+++V++ LDR+ + K+ A + G+ P+ +T+N+ D NDN P+
Sbjct: 65 WMLVTRP-LDREEYD--KYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQ----D 117
Query: 61 IQAGEARR------QIVKIEATDNDLGV---NAEITYSIYHVSNTG--LHKFRIDPRSGV 109
+ G R Q++ + ATD D + N ++YSI + F I+ +GV
Sbjct: 118 VFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGV 177
Query: 110 IETTGKLIAGE---QYSITVQATDTGGK----SSQTIVEVSVVPGPNTRSPVFQQNTYDV 162
I G + E +Y++TVQATD G + I++++ N +P+F TY
Sbjct: 178 ISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT---DANDNAPIFDPKTYTA 234
Query: 163 NVSEGASINSTVATITVSRL 182
V E I V ++V+ L
Sbjct: 235 LVPEN-EIGFEVQRLSVTDL 253
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 4 VSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQA 63
++KE D P + V A E G S V LT+ + D+NDNAP+ + P Q
Sbjct: 276 LAKELDFEDLRQPHVYSLIVTATEDSG-GFSTSVDLTIRVTDVNDNAPKFEL-PDYQAHN 333
Query: 64 GEAR----RQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAG 119
+ I++++A D+D G NAEI Y + F +D +G+I +L A
Sbjct: 334 VDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSD------DHFAVDS-NGIIVNNKQLDAD 386
Query: 120 EQ---YSITVQATDTG 132
Y V A D G
Sbjct: 387 NNNAYYEFIVTAKDKG 402
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 12/131 (9%)
Query: 50 APRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGV 109
AP+ M P + + E +++ I + + EI Y++ G F I P SG+
Sbjct: 216 APQFYM-PSYEAEIPENQKKDSDIISIKAKSFADREIRYTL-KAQGQGAGTFNIGPTSGI 273
Query: 110 IETTGKLIAGEQ-----YSITVQAT-DTGGKSSQTIVEVSVVP----GPNTRSPVFQQNT 159
++ +L + YS+ V AT D+GG S+ + + V P P +Q +
Sbjct: 274 VKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHN 333
Query: 160 YDVNVSEGASI 170
D ++ G SI
Sbjct: 334 VDEDIPLGTSI 344
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 3 VVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLP-----MIP 57
+ + + LDR+ R Q + R + G + ++DINDN P
Sbjct: 57 IQATKRLDREEKPVYILRAQAVNR-RTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATV 115
Query: 58 PIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLI 117
P G Q+ +A D G +A++ YSI G F ++ +G+I+T L+
Sbjct: 116 PEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQ----GQPYFSVESETGIIKTA--LL 169
Query: 118 AG-----EQYSITVQATDTGGK 134
EQY + +QA D GG+
Sbjct: 170 NMDRENREQYQVVIQAKDMGGQ 191
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 36 PVSLTVNLNDINDNAPRL-----PMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSI 90
P V + DINDN P P + G + Q+ +A D G +A++ YSI
Sbjct: 90 PSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSI 149
Query: 91 YHVSNTGLHKFRIDPRSGVIETTGKLI---AGEQYSITVQATDTGG 133
G F ++ ++G+I T + A E+Y + +QA D GG
Sbjct: 150 LE----GQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGG 191
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 22/181 (12%)
Query: 17 GKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARR------QI 70
+F + A + G P+ + +N+ D+NDN P Q+ G +
Sbjct: 72 ARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLH----QVWNGSVPEGSKPGTYV 127
Query: 71 VKIEATDNDL--GVNAEITYSIYH--VSNTGLHKFRIDPRSGVIETTGKLIAGE---QYS 123
+ + A D D +N + Y I S + F I+ +G I T + E QY+
Sbjct: 128 MTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT 187
Query: 124 ITVQATDTGGKS----SQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITV 179
+ +QATD G S T V V N P F T+ V E ++ VA +TV
Sbjct: 188 LIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVIVANLTV 246
Query: 180 S 180
+
Sbjct: 247 T 247
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 19 FRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRL-PMIPPIQIQAGEARRQIVKIEATD 77
+ V A + QG S + + DINDNAP P Q+ E +I ++ TD
Sbjct: 187 YTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNARIATLKVTD 246
Query: 78 NDLGVNAEITYSIYHVSNTGLHKFRI--DPRS--GVIETTGKLI--AGEQYSITVQ 127
+D N ++Y V N +F + DP + G+++T L A +QY + V+
Sbjct: 247 DD-APNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVR 301
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 55 MIPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHK-----FRIDPR 106
+IPPI + GE + +V+I++ + + T Y ++ G K F I+
Sbjct: 3 VIPPISCPENEKGEFPKNLVQIKSNRD------KETKVFYSITGQGADKPPVGVFIIERE 56
Query: 107 SGVIETTGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTYDVN 163
+G ++ T L A +Y + A + G++ + +E+ + V N P F Q ++ +
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 164 VSEGASINSTVATITVS 180
V+EGA ++V ++ +
Sbjct: 117 VAEGAVPGTSVMKVSAT 133
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 70 IVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGE--QYSITVQ 127
I+++ A D D+GVN +I Y + + R+D SG + ++ E Q TV
Sbjct: 33 ILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVM 92
Query: 128 ATDTG 132
A D G
Sbjct: 93 ARDRG 97
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 9 LDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAP 51
+DR+ N + RF V+AR++ + ++ +N+ D NDN P
Sbjct: 79 IDREEVN--QLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 27/140 (19%)
Query: 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAP---------R 52
+V ++ LDR+ +F + + QG + + + D+NDNAP R
Sbjct: 64 VVWLRQPLDRE--TKSEFTVEFSVSDHQGVITR---KVNIQVGDVNDNAPTFHNQPYSVR 118
Query: 53 LPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIET 112
+P P+ I + ATD DLG + YS S F ID G++
Sbjct: 119 IPENTPVG-------TPIFIVNATDPDLGAGGSVLYSFQPPSPF----FAIDSARGIVTV 167
Query: 113 TGKLI--AGEQYSITVQATD 130
+L + Y +TV ATD
Sbjct: 168 IQELDYEVTQAYQLTVNATD 187
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 27/140 (19%)
Query: 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAP---------R 52
+V ++ LDR+ +F + + QG + + + D+NDNAP R
Sbjct: 64 VVWLRQPLDRE--TKSEFTVEFSVSDHQGVITR---KVNIQVGDVNDNAPTFHNQPYSVR 118
Query: 53 LPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIET 112
+P P+ I + ATD DLG + YS S F ID G++
Sbjct: 119 IPENTPVG-------TPIFIVNATDPDLGAGGSVLYSFQPPSPF----FAIDSARGIVTV 167
Query: 113 TGKLI--AGEQYSITVQATD 130
+L + Y +TV ATD
Sbjct: 168 IQELDYEVTQAYQLTVNATD 187
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 20/151 (13%)
Query: 3 VVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPM------I 56
+ + E LDR+ + +I R + + P + ++DINDNAP +
Sbjct: 55 IYAFERLDREKKAEYELTAHIIDR-RNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSV 113
Query: 57 PPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKL 116
P + + G + ++ +A D + +A +TY I G F +D SGVI T
Sbjct: 114 PEMS-RLGTSVTKVTAEDADDPTVAGHATVTYQII----KGNEYFTVDD-SGVIFTARAD 167
Query: 117 IAGEQ---YSITVQATD----TGGKSSQTIV 140
+ E Y I V+A D TG S+ T++
Sbjct: 168 LDRESQSAYEIIVKAKDALGLTGESSTATVI 198
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 33.5 bits (75), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 53 LPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYH 92
LPM+PP+ +QA ++I DN L + +IT S Y+
Sbjct: 3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYY 42
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 27/140 (19%)
Query: 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAP---------R 52
+V ++ LDR+ +F + + QG + + + D+NDNAP R
Sbjct: 63 VVWLRQPLDRE--TKSEFTVEFSVSDHQGVITR---KVNIQVGDVNDNAPTFHNQPYSVR 117
Query: 53 LPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIET 112
+P P+ I + ATD DLG + YS S F ID G++
Sbjct: 118 IPENTPVGTP-------IFIVNATDPDLGAGGSVLYSFQPPS----PFFAIDSARGIVTV 166
Query: 113 TGKLI--AGEQYSITVQATD 130
+L + Y +TV ATD
Sbjct: 167 IQELDYEVTQAYQLTVNATD 186
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 101 FRIDPRSGVIETTGKL----IAGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVF 155
FRI+ +G + T L IA Y + V+ TD GK+ + V + V V N P+F
Sbjct: 51 FRINENTGSVSVTRTLDRETIA--TYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIF 108
Query: 156 QQNTYDVNVSEGASINSTVATIT 178
++ Y +V EG+ +TV +T
Sbjct: 109 REGPYIGHVMEGSPTGTTVMRMT 131
>pdb|1X5J|A Chain A, The Solution Structure Of The Fifth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 113
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 54 PMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYH 92
PM+PP+ +QA ++I DN L + +IT S Y+
Sbjct: 8 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYY 46
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 91 YHVSNTGLHK-----FRIDPRSGVIETTGKLI--AGEQYSITVQATDTGGK--SSQTIVE 141
+ +S G+ + FRI+ SG + T L A Y + V+ TD GK ++
Sbjct: 35 FRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLD 94
Query: 142 VSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATIT 178
+SV+ N P+F++ Y +V EG+ +TV +T
Sbjct: 95 ISVI-DQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMT 130
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 11/130 (8%)
Query: 17 GKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPR-LPMIP----PIQIQAGEARRQIV 71
+F + A + G P+ + +N+ D+NDN P L + P + G +
Sbjct: 72 ARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVT 131
Query: 72 KIEATDNDLGVNAEITYSIYH--VSNTGLHKFRIDPRSGVIETTGKLIAGE---QYSITV 126
I+A D + +N + Y I S + F I+ +G I T + E QY++ +
Sbjct: 132 AIDADDPN-ALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLII 190
Query: 127 QATDTGGKSS 136
QATD G +
Sbjct: 191 QATDMEGNPT 200
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 52 RLPMIPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHK-----FRI 103
R +IPPI + GE + +V+I++ + + T Y ++ G K F I
Sbjct: 2 RDWVIPPISCPENEKGEFPKNLVQIKSNRD------KETKVFYSITGQGADKPPVGVFII 55
Query: 104 DPRSGVIETTGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTY 160
+ +G ++ T L A +Y + A + G++ + +E+ + V N P F Q +
Sbjct: 56 ERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVF 115
Query: 161 DVNVSEGASINSTVATITVS 180
+ +V+EGA ++V ++ +
Sbjct: 116 EGSVAEGAVPGTSVMKVSAT 135
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 11/130 (8%)
Query: 17 GKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPR-LPMIP----PIQIQAGEARRQIV 71
+F + A + G P+ + +N+ D+NDN P L + P + G +
Sbjct: 72 ARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVT 131
Query: 72 KIEATDNDLGVNAEITYSIYH--VSNTGLHKFRIDPRSGVIETTGKLIAGE---QYSITV 126
I+A D + +N + Y I S + F I+ +G I T + E QY++ +
Sbjct: 132 AIDADDPN-ALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLII 190
Query: 127 QATDTGGKSS 136
QATD G +
Sbjct: 191 QATDMEGNPT 200
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 27/140 (19%)
Query: 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAP---------R 52
+V ++ LDR+ +F + + QG + + + +NDNAP R
Sbjct: 64 VVWLRQPLDRE--TKSEFTVEFSVSDHQGVITR---KVNIQVGGVNDNAPTFHNQPYSVR 118
Query: 53 LPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIET 112
+P P+ I + ATD DLG + YS S F ID G++
Sbjct: 119 IPENTPVG-------TPIFIVNATDPDLGAGGSVLYSFQPPSPF----FAIDSARGIVTV 167
Query: 113 TGKLI--AGEQYSITVQATD 130
+L + Y +TV ATD
Sbjct: 168 IQELDYEVTQAYQLTVNATD 187
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 52 RLPMIPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHK-----FRI 103
R +IPPI + GE + +V+I++ + + T Y ++ G K F I
Sbjct: 2 RDWVIPPISCPENEKGEFPKNLVQIKSNRD------KETKVFYSITGQGADKPPVGVFII 55
Query: 104 DPRSGVIETTGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTY 160
+ +G ++ T L A +Y + A + G++ + +E+ + V N P F Q +
Sbjct: 56 ERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVF 115
Query: 161 DVNVSEGASINSTVATITVS 180
+ +V+EGA ++V ++ +
Sbjct: 116 EGSVAEGAVPGTSVMKVSAT 135
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 55 MIPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHK-----FRIDPR 106
+IPPI + GE + +V+I++ + + T Y ++ G K F I+
Sbjct: 4 VIPPISCPENEKGEFPKNLVQIKSNRD------KETKVFYSITGQGADKPPVGVFIIERE 57
Query: 107 SGVIETTGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTYDVN 163
+G ++ T L A +Y + A + G++ + +E+ + V N P F Q ++ +
Sbjct: 58 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 117
Query: 164 VSEGASINSTVATITVS 180
V+EGA ++V ++ +
Sbjct: 118 VAEGAVPGTSVMKVSAT 134
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 55 MIPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHK-----FRIDPR 106
+IPPI + GE + +V+I++ + + T Y ++ G K F I+
Sbjct: 5 VIPPISCPENEKGEFPKNLVQIKSNRD------KETKVFYSITGQGADKPPVGVFIIERE 58
Query: 107 SGVIETTGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTYDVN 163
+G ++ T L A +Y + A + G++ + +E+ + V N P F Q ++ +
Sbjct: 59 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 118
Query: 164 VSEGASINSTVATITVS 180
V+EGA ++V ++ +
Sbjct: 119 VAEGAVPGTSVMKVSAT 135
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 55 MIPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHK-----FRIDPR 106
+IPPI + GE + +V+I++ + + T Y ++ G K F I+
Sbjct: 2 VIPPISCPENEKGEFPKNLVQIKSNRD------KETKVFYSITGQGADKPPVGVFIIERE 55
Query: 107 SGVIETTGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTYDVN 163
+G ++ T L A +Y + A + G++ + +E+ + V N P F Q ++ +
Sbjct: 56 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 115
Query: 164 VSEGASINSTVATITVS 180
V+EGA ++V ++ +
Sbjct: 116 VAEGAVPGTSVMKVSAT 132
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 55 MIPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHK-----FRIDPR 106
+IPPI + GE + +V+I++ + + T Y ++ G K F I+
Sbjct: 3 VIPPISCPENEKGEFPKNLVQIKSNRD------KETKVFYSITGQGADKPPVGVFIIERE 56
Query: 107 SGVIETTGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTYDVN 163
+G ++ T L A +Y + A + G++ + +E+ + V N P F Q ++ +
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 164 VSEGASINSTVATITVS 180
V+EGA ++V ++ +
Sbjct: 117 VAEGAVPGTSVMKVSAT 133
>pdb|2DBJ|A Chain A, Solution Structures Of The Fn3 Domain Of Human Proto-
Oncogene Tyrosine-Protein Kinase Mer Precursor
Length = 124
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 22 QVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGE 65
++A +G + P+++TV LN+ +DN M PP + Q GE
Sbjct: 8 WILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGE 51
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 55 MIPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHK-----FRIDPR 106
+IPPI + GE + +V+I++ + + T Y ++ G K F I+
Sbjct: 3 VIPPISCPENEKGEFPKNLVQIKSNRD------KETKVFYSITGQGADKPPVGVFIIERE 56
Query: 107 SGVIETTGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTYDVN 163
+G ++ T L A +Y + A + G++ + +E+ + V N P F Q ++ +
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 164 VSEGASINSTVATITVS 180
V+EGA ++V ++ +
Sbjct: 117 VAEGAVPGTSVMKVSAT 133
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 55 MIPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHK-----FRIDPR 106
+IPPI + GE + +V+I++ + + T Y ++ G K F I+
Sbjct: 3 VIPPISCPENEEGEFPKNLVQIKSNRD------KETKVFYSITGQGADKPPVGVFIIERE 56
Query: 107 SGVIETTGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTYDVN 163
+G ++ T L A +Y + A + G++ + +E+ + V N P F Q ++ +
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 164 VSEGASINSTVATITVS 180
V+EGA ++V ++ +
Sbjct: 117 VAEGAVPGTSVMKVSAT 133
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 55 MIPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHK-----FRIDPR 106
+IPPI + GE + +V+I++ + + T Y ++ G K F I+
Sbjct: 3 VIPPISCPENEKGEFPKNLVQIKSNRD------KETKVFYSITGQGADKPPVGVFIIERE 56
Query: 107 SGVIETTGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTYDVN 163
+G ++ T L A +Y + A + G++ + +E+ + V N P F Q ++ +
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 164 VSEGASINSTVATITVS 180
V+EGA ++V ++ +
Sbjct: 117 VAEGAVPGTSVMKVSAT 133
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 55 MIPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHK-----FRIDPR 106
+IPPI + GE + +V+I++ + + T Y ++ G K F I+
Sbjct: 3 VIPPISCPENEEGEFPKNLVQIKSNRD------KETKVFYSITGQGADKPPVGVFIIERE 56
Query: 107 SGVIETTGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTYDVN 163
+G ++ T L A +Y + A + G++ + +E+ + V N P F Q ++ +
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 164 VSEGASINSTVATITVS 180
V+EGA ++V ++ +
Sbjct: 117 VAEGAVPGTSVMKVSAT 133
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 55 MIPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHK-----FRIDPR 106
+IPPI + GE + +V+I++ + + T Y ++ G K F I+
Sbjct: 3 VIPPISCPENEKGEFPKNLVQIKSNRD------KETKVFYSITGQGADKPPVGVFIIERE 56
Query: 107 SGVIETTGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTYDVN 163
+G ++ T L A +Y + A + G++ + +E+ + V N P F Q ++ +
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 164 VSEGASINSTVATITVS 180
V+EGA ++V ++ +
Sbjct: 117 VAEGAVPGTSVMKVSAT 133
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Query: 55 MIPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHK-----FRIDPR 106
+IPPI + GE + +V+I++ + + T Y ++ G K F I+
Sbjct: 3 VIPPISCPENEKGEFPKNLVQIKSNRD------KETKVFYSITGQGADKPPVGVFIIERE 56
Query: 107 SGVIETTGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTYDVN 163
+G ++ T L A +Y + A + G++ +E+ + V N P F Q ++ +
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 164 VSEGASINSTVATITVS 180
V+EGA ++V ++ +
Sbjct: 117 VAEGAVPGTSVMKVSAT 133
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 70 IVKIEATDNDLGVNAEITYSI-YHVSNTGLHKFRIDPRSGVIETTGKLIAGEQ--YSITV 126
++++ ATD D+G NAEI Y V+ F ++ +G+I L E + +TV
Sbjct: 33 VIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTV 92
Query: 127 QATDTGGKSSQTIVEVSV 144
A+D ++ V ++V
Sbjct: 93 LASDGSSTPARATVTINV 110
>pdb|2EDD|A Chain A, Solution Structure Of The Fifth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 123
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 54 PMIPPIQIQAGEARRQIVKIEATDNDLGVNAEIT----YSI-YHVSNTGLHKFRIDPRSG 108
PM+PP+ +QA V++ DN + N + + Y++ + S + K++ + +
Sbjct: 18 PMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTS 77
Query: 109 VIETTGKLIAGEQYSITVQAT 129
+ T L Y +V T
Sbjct: 78 LSYTATGLKPNTMYEFSVMVT 98
>pdb|1NOV|A Chain A, Nodamura Virus
pdb|1NOV|B Chain B, Nodamura Virus
pdb|1NOV|C Chain C, Nodamura Virus
Length = 355
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 101 FRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIVEVSVVPG 147
F DP G+ + L+ +++ +T T T GK QT++ V+ +PG
Sbjct: 68 FSTDPGKGIPDKFQGLVLPKKHCLTQSITFTPGK--QTMLLVAPIPG 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,477,435
Number of Sequences: 62578
Number of extensions: 211056
Number of successful extensions: 389
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 56
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)