Query psy5884
Match_columns 195
No_of_seqs 193 out of 1323
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 20:36:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a62_A Cadherin-8; extracellul 100.0 2.1E-40 7.1E-45 265.3 16.9 179 2-187 56-247 (322)
2 3q2w_A Cadherin-2; cell adhesi 100.0 9E-38 3.1E-42 266.6 21.7 180 3-186 60-253 (559)
3 3q2v_A Cadherin-1; cell adhesi 100.0 3.4E-37 1.2E-41 262.6 21.5 182 2-187 59-252 (550)
4 1l3w_A EP-cadherin, C-cadherin 100.0 3.6E-37 1.2E-41 262.2 20.6 181 2-186 65-259 (546)
5 3ubf_A Neural-cadherin; cell a 100.0 7.9E-37 2.7E-41 244.2 19.2 178 2-185 51-244 (316)
6 1q55_A EP-cadherin, C-cadherin 100.0 4.5E-36 1.5E-40 266.8 20.6 177 3-183 215-403 (880)
7 3q2v_A Cadherin-1; cell adhesi 100.0 4E-35 1.4E-39 249.9 21.8 177 4-187 174-364 (550)
8 3ubh_A Neural-cadherin; cell a 100.0 1.2E-34 4.1E-39 239.7 20.5 178 2-187 167-357 (419)
9 1l3w_A EP-cadherin, C-cadherin 100.0 2E-35 6.7E-40 251.5 14.9 174 6-187 182-370 (546)
10 3ubh_A Neural-cadherin; cell a 100.0 2.1E-34 7.2E-39 238.2 20.0 177 3-185 57-249 (419)
11 3q2w_A Cadherin-2; cell adhesi 100.0 1.3E-34 4.5E-39 247.1 19.2 179 3-187 171-370 (559)
12 2a4e_A Cadherin-11; dimer, cal 100.0 7.9E-34 2.7E-38 215.1 19.2 146 2-154 57-215 (215)
13 1q55_A EP-cadherin, C-cadherin 100.0 3.9E-34 1.3E-38 254.4 14.9 175 6-187 331-519 (880)
14 2x2u_A Proto-oncogene tyrosine 100.0 4.4E-34 1.5E-38 220.7 6.5 149 2-156 66-245 (246)
15 3mvs_A Cadherin-23, otocadheri 100.0 2.7E-31 9.2E-36 200.7 19.0 141 2-152 63-210 (210)
16 3qrb_A Cadherin-1; cell adhesi 100.0 2.4E-31 8.2E-36 201.4 17.8 142 2-145 59-212 (213)
17 3k5r_A Cadherin 13; mouse, str 100.0 3.4E-31 1.2E-35 201.2 18.2 142 2-145 59-217 (218)
18 2qvi_A Cadherin-2; beta barrel 100.0 3.4E-31 1.2E-35 200.7 16.4 142 2-145 59-214 (215)
19 3ppe_A Vascular endothelial ca 100.0 3.1E-30 1.1E-34 193.8 19.2 137 2-145 54-202 (203)
20 3lnd_A CDH6 protein, cadherin 100.0 9.6E-31 3.3E-35 197.2 12.8 138 2-145 56-206 (207)
21 3ubf_A Neural-cadherin; cell a 100.0 4.8E-28 1.6E-32 193.4 18.1 143 2-152 162-316 (316)
22 2yst_A Protocadherin-7; BH-PCD 100.0 9.1E-29 3.1E-33 170.8 8.0 112 41-153 2-119 (119)
23 2a62_A Cadherin-8; extracellul 100.0 3.7E-28 1.3E-32 194.3 11.6 139 3-145 164-322 (322)
24 3mvs_A Cadherin-23, otocadheri 100.0 1.3E-27 4.4E-32 180.5 13.2 133 48-187 3-141 (210)
25 4apx_B Protocadherin-15, otoca 99.9 1.8E-26 6.3E-31 177.3 13.2 140 5-145 79-236 (242)
26 2ee0_A Protocadherin-9; Ca dom 99.9 4.9E-27 1.7E-31 160.8 7.8 108 41-149 2-114 (114)
27 2qvi_A Cadherin-2; beta barrel 99.9 9.9E-26 3.4E-30 170.7 15.0 126 58-184 6-137 (215)
28 2a4e_A Cadherin-11; dimer, cal 99.9 4.1E-25 1.4E-29 167.2 16.3 123 57-184 6-136 (215)
29 3qrb_A Cadherin-1; cell adhesi 99.9 1.9E-24 6.4E-29 163.5 15.1 124 58-185 6-138 (213)
30 3ppe_A Vascular endothelial ca 99.9 4.5E-24 1.5E-28 160.2 16.6 120 58-184 6-133 (203)
31 3lnd_A CDH6 protein, cadherin 99.9 4.4E-25 1.5E-29 166.2 8.0 122 58-184 6-135 (207)
32 3k5r_A Cadherin 13; mouse, str 99.9 3.7E-24 1.3E-28 162.4 12.1 122 58-184 7-137 (218)
33 2x2u_A Proto-oncogene tyrosine 99.9 1.1E-25 3.7E-30 173.7 1.1 132 52-187 2-171 (246)
34 2yqg_A Desmoglein-2, HDGC; cad 99.8 1.9E-21 6.4E-26 134.7 4.7 109 46-157 5-122 (123)
35 4apx_B Protocadherin-15, otoca 99.8 2.6E-19 9E-24 137.5 14.8 126 58-187 23-164 (242)
36 1ncg_A N-cadherin; cell adhesi 99.8 1.5E-19 5E-24 122.7 9.3 95 57-155 7-110 (110)
37 1wyj_A Protocadherin beta 14; 99.8 9.8E-20 3.3E-24 126.2 1.8 101 57-163 13-123 (125)
38 1zxk_A Cadherin-8; strand dime 99.7 5.2E-17 1.8E-21 107.7 10.6 85 57-145 5-97 (98)
39 1zvn_A Mn-cadherin; strand dim 99.7 7.6E-17 2.6E-21 107.1 11.3 85 57-145 6-98 (99)
40 3k6d_A T-cadherin; cell adhesi 99.7 6.5E-16 2.2E-20 102.6 9.5 85 57-145 5-98 (99)
41 3k6i_A T-cadherin; cell adhesi 99.6 2E-15 6.7E-20 100.3 11.2 84 58-145 6-98 (99)
42 3k6f_A T-cadherin; cell adhesi 99.6 1.9E-15 6.5E-20 100.5 10.7 84 58-145 7-99 (100)
43 2omz_B Epithelial-cadherin; le 99.6 1.6E-15 5.5E-20 101.8 9.8 87 58-148 10-105 (105)
44 2yqg_A Desmoglein-2, HDGC; cad 99.5 1E-13 3.4E-18 95.6 6.6 52 2-55 71-122 (123)
45 1ncg_A N-cadherin; cell adhesi 99.4 9.7E-14 3.3E-18 93.8 5.6 50 2-53 61-110 (110)
46 1wuz_A Pcdha4 protein, CNR-EC1 99.4 8.7E-14 3E-18 92.9 1.1 89 58-151 6-103 (103)
47 2yst_A Protocadherin-7; BH-PCD 99.3 6E-12 2.1E-16 86.1 6.6 48 2-51 72-119 (119)
48 1wyj_A Protocadherin beta 14; 99.1 4.9E-11 1.7E-15 82.2 2.9 51 2-57 65-119 (125)
49 2ee0_A Protocadherin-9; Ca dom 99.1 4.3E-11 1.5E-15 81.3 2.5 45 142-187 2-46 (114)
50 2omz_B Epithelial-cadherin; le 98.8 5.1E-09 1.8E-13 69.8 6.1 43 2-46 63-105 (105)
51 3k6f_A T-cadherin; cell adhesi 98.8 1.7E-08 5.9E-13 66.6 7.0 41 3-45 60-100 (100)
52 3k6i_A T-cadherin; cell adhesi 98.8 2.3E-08 8E-13 65.9 7.3 41 3-45 59-99 (99)
53 3k6d_A T-cadherin; cell adhesi 98.8 2.3E-08 7.9E-13 65.9 7.0 42 2-45 58-99 (99)
54 1zvn_A Mn-cadherin; strand dim 98.8 2E-08 6.8E-13 66.2 6.5 41 3-45 58-99 (99)
55 1zxk_A Cadherin-8; strand dime 98.7 2.5E-08 8.6E-13 65.6 5.9 42 2-45 56-98 (98)
56 1wuz_A Pcdha4 protein, CNR-EC1 97.8 1.4E-05 4.9E-10 52.7 4.0 43 2-49 57-103 (103)
57 3pdd_A Glycoside hydrolase, fa 95.5 0.47 1.6E-05 34.3 15.8 114 16-145 60-179 (190)
58 2yrl_A KIAA1837 protein; PKD d 91.9 1.6 5.6E-05 28.0 11.1 89 49-145 5-94 (102)
59 1op4_A Neural-cadherin; beta s 90.5 2.2 7.7E-05 29.9 8.5 75 49-132 32-110 (159)
60 2yhg_A SDE_182CT, cellulose-bi 89.6 3.9 0.00013 33.5 10.4 74 67-144 354-436 (437)
61 2kpn_A Bacillolysin; solution 88.4 1.3 4.4E-05 28.7 5.6 27 119-145 58-84 (103)
62 2yrl_A KIAA1837 protein; PKD d 86.6 1.8 6.3E-05 27.8 5.6 31 16-48 68-98 (102)
63 3rb5_A Na/Ca exchange protein; 79.3 20 0.00067 27.7 11.7 125 47-178 6-146 (298)
64 2y72_A Collagenase, collagenas 76.0 9.9 0.00034 23.2 6.0 32 114-145 53-84 (85)
65 2y72_A Collagenase, collagenas 75.3 8.3 0.00029 23.5 5.5 27 16-44 58-84 (85)
66 2kpn_A Bacillolysin; solution 72.6 13 0.00046 23.8 6.0 43 6-52 50-92 (103)
67 3pe9_A Fibronectin(III)-like m 69.2 19 0.00065 22.8 10.2 68 68-145 18-87 (98)
68 3rb5_A Na/Ca exchange protein; 55.2 69 0.0024 24.6 11.9 73 16-92 90-163 (298)
69 2jtd_A Myomesin-1, skelemin; i 54.5 46 0.0016 22.3 6.9 81 50-132 36-119 (142)
70 3pe9_A Fibronectin(III)-like m 52.8 27 0.00093 22.0 4.7 28 16-44 60-87 (98)
71 3us9_A Sodium/calcium exchange 52.5 77 0.0026 24.3 15.2 117 56-178 16-164 (295)
72 3gin_A Sodium/calcium exchange 51.2 58 0.002 22.5 8.3 56 37-94 10-66 (160)
73 1wfu_A Unnamed protein product 47.6 54 0.0019 21.2 6.2 52 85-136 51-102 (120)
74 2ptt_B Natural killer cell rec 40.3 59 0.002 21.1 4.7 47 97-145 64-111 (112)
75 3ead_A Na/Ca exchange protein; 32.2 1.1E+02 0.0038 20.2 11.2 104 58-168 13-133 (137)
76 2c4x_A Endoglucanase, ctcel9D- 31.6 1E+02 0.0035 23.2 5.6 31 115-145 64-94 (260)
77 2e7m_A Protein KIAA0319; PKD d 31.3 28 0.00095 22.8 2.1 27 118-145 78-104 (113)
78 2dmk_A Midline 2 isoform 2; mi 27.4 76 0.0026 20.2 3.9 30 112-141 83-112 (127)
79 3ott_A Two-component system se 27.1 2.9E+02 0.01 23.5 8.7 70 71-145 676-747 (758)
80 2c4x_A Endoglucanase, ctcel9D- 24.8 1.2E+02 0.0042 22.7 5.0 29 16-46 68-96 (260)
81 3b83_A Ten-D3; beta sheet, com 23.3 1.2E+02 0.0041 18.2 4.2 31 112-142 58-88 (100)
82 1k85_A Chitinase A1; fibronect 22.5 79 0.0027 18.4 3.1 22 113-134 55-76 (88)
83 2dkm_A Collagen alpha-1(XX) ch 22.4 1E+02 0.0035 18.7 3.7 30 112-141 64-93 (104)
84 1j8k_A Fibronectin; EDA, TYPEI 22.1 1.3E+02 0.0044 17.6 4.4 29 113-141 59-87 (94)
No 1
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}
Probab=100.00 E-value=2.1e-40 Score=265.26 Aligned_cols=179 Identities=25% Similarity=0.396 Sum_probs=163.5
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCC-CCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeC
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQG-TAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDN 78 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~-~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~ 78 (195)
.|++.++||||. ...|.|.|.|+|.++ ++++++++|.|.|.|+|||+|.|... +.+.++|+.+ |+.++++.|+|+
T Consensus 56 ~i~~~~~LDrE~--~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~ 133 (322)
T 2a62_A 56 DIHAIKRLDREE--KAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDA 133 (322)
T ss_dssp EEEECSCCCTTT--CSBCCEEEEEECTTTCSEEEEEEEECEECCCCSCSCBCCSSSEEEEEECSSCCTTCBCCCCCCCBC
T ss_pred EEEEeccCCccc--ccEEEEEEEEEECCCCCcccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeC
Confidence 467889999999 889999999999875 46888999999999999999999886 5789999997 999999999999
Q ss_pred CC---CCCceEEEEEEeeCCCCeecEEEeCCCCEEEEc-eeCCCC--CEEEEEEEEEECCC----CceeEEEEEEEEcCC
Q psy5884 79 DL---GVNAEITYSIYHVSNTGLHKFRIDPRSGVIETT-GKLIAG--EQYSITVQATDTGG----KSSQTIVEVSVVPGP 148 (195)
Q Consensus 79 D~---~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~-~~ld~~--~~~~l~v~a~D~~~----~~~~~~v~i~V~~d~ 148 (195)
|. |.|+.++|+|..+ ..+|.|++.+|.|++. +.|||| ..|.|.|.|+|.|. ++++++|.|+|. |+
T Consensus 134 D~~~~G~n~~i~Y~i~~~----~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v~I~V~-Dv 208 (322)
T 2a62_A 134 DDPVYGNSAKLVYSILEG----QPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLT-DV 208 (322)
T ss_dssp SCSSSTTSSCEEEEEEEC----TTTEEECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEEEEEEC-CC
T ss_pred CCCCCCccEEEEEEEccC----CCCEEEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCCceeEEEEEEEEE-ec
Confidence 96 7899999999862 3689999999999998 899987 47999999999875 578899999999 99
Q ss_pred CCCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCCCCC
Q psy5884 149 NTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASGCA 187 (195)
Q Consensus 149 nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~~ 187 (195)
||++|.|.+..|.+.|+|+.++|+.|+++.|+|+|.|.|
T Consensus 209 NDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n 247 (322)
T 2a62_A 209 NDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGEN 247 (322)
T ss_dssp CCCCCCCSCSEEEEEECSCCSSCCEEEEEECCCSSCGGG
T ss_pred CCCCCeecCCCceeEeECCCCCCcEEEEEEEEeCCCCCC
Confidence 999999999999999999999999999999999999854
No 2
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}
Probab=100.00 E-value=9e-38 Score=266.64 Aligned_cols=180 Identities=25% Similarity=0.371 Sum_probs=163.6
Q ss_pred EecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeCCC
Q psy5884 3 VVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDNDL 80 (195)
Q Consensus 3 i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~D~ 80 (195)
|++.++||||+ ...|.|.+.|+|++++.+++++.|.|.|+|+|||+|.|.+. +.+.|.|+.+ |+.++++.|+|+|.
T Consensus 60 l~~~~~LDrE~--~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~Gt~v~~v~A~D~D~ 137 (559)
T 3q2w_A 60 LSVTKPLDREL--IARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADD 137 (559)
T ss_dssp EEECSCCCTTT--CSEEEEEEEEEETTSCEEEEEEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECSSC
T ss_pred EEECCccCCCC--CceEEEEEEEEECCCCccceeEEEEEEEEeCCCCCCccCCCeeEEEEeCCCCCCcEEEEEEEEcCCC
Confidence 67889999999 88999999999999999999999999999999999999987 5689999988 99999999999998
Q ss_pred C--CCceEEEEEEeeCCC--CeecEEEeCCCCEEEEce-eCCCCC--EEEEEEEEEECCC-----CceeEEEEEEEEcCC
Q psy5884 81 G--VNAEITYSIYHVSNT--GLHKFRIDPRSGVIETTG-KLIAGE--QYSITVQATDTGG-----KSSQTIVEVSVVPGP 148 (195)
Q Consensus 81 ~--~n~~~~y~i~~~~~~--~~~~F~id~~tG~i~~~~-~ld~~~--~~~l~v~a~D~~~-----~~~~~~v~i~V~~d~ 148 (195)
| .|+.++|+|..+... ..++|.|++.+|.|++.+ .||||. .|.|.|+|+|.++ ++++++|.|+|. |+
T Consensus 138 g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~g~p~~~~s~t~~v~I~V~-Dv 216 (559)
T 3q2w_A 138 PNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVT-DV 216 (559)
T ss_dssp TTSGGGCCEEEEEEEESCCSCTTCEEECTTTCEEEECCSCCCTTTCCEEEEEEEEEHHHHCTTTCCEEEEEEEEEEE-CC
T ss_pred CCCCceEEEEEEecCCCCCCCcceEEEeCCceEEEEEeccCCcccCCEEEEEEEEEECCCCCCCCccceEEEEEEEE-eC
Confidence 7 689999999864321 126899999999999988 999884 7999999999743 688899999999 99
Q ss_pred CCCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCCCC
Q psy5884 149 NTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASGC 186 (195)
Q Consensus 149 nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~ 186 (195)
||++|.|....|.+.|+|+. +|+.|+++.|+|+|.|.
T Consensus 217 NDn~P~f~~~~y~~~V~En~-~g~~v~~v~a~D~D~~~ 253 (559)
T 3q2w_A 217 NDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDKDQPH 253 (559)
T ss_dssp SCSCCEESSSEEEEEEESSC-SSEEEEEEEEECCSCTT
T ss_pred CCCCCccccccceeEecCCC-CCcEEEEEEEEcCCCCC
Confidence 99999999999999999997 89999999999999975
No 3
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}
Probab=100.00 E-value=3.4e-37 Score=262.64 Aligned_cols=182 Identities=27% Similarity=0.401 Sum_probs=165.4
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeCC
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDND 79 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~D 79 (195)
.|++.++||||+ ...|.|.+.|+|.+++++++++.|.|.|.|+|||+|.|... +.+.|.|+.+ |+.++++.|+|+|
T Consensus 59 ~l~~~~~LDrE~--~~~y~l~v~a~d~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~E~~~~Gt~v~~v~A~D~D 136 (550)
T 3q2v_A 59 WLKVTQPLDREA--IAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136 (550)
T ss_dssp EEEECSCCCTTT--CSEEEEEEEEEETTSCBCSCCEEEEEEEECCSCCCCCBSCSEEEEEEETTCCTTCEEEECCBCCCS
T ss_pred EEEECCccCccc--CCeeEEEEEEEeCCCCcccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCC
Confidence 367889999999 88999999999999888889999999999999999999987 5789999987 9999999999999
Q ss_pred CC---CCceEEEEEEeeCC--CCeecEEEeCCCCEEEE-ceeCCCC--CEEEEEEEEEECCC--CceeEEEEEEEEcCCC
Q psy5884 80 LG---VNAEITYSIYHVSN--TGLHKFRIDPRSGVIET-TGKLIAG--EQYSITVQATDTGG--KSSQTIVEVSVVPGPN 149 (195)
Q Consensus 80 ~~---~n~~~~y~i~~~~~--~~~~~F~id~~tG~i~~-~~~ld~~--~~~~l~v~a~D~~~--~~~~~~v~i~V~~d~n 149 (195)
.| .|+.++|+|..+.+ ...++|.|++.+|.|++ .+.|||| ..|.|.|+|+|.|+ ++++++|.|+|. |+|
T Consensus 137 ~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~-DvN 215 (550)
T 3q2v_A 137 DDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK-DIN 215 (550)
T ss_dssp CTTTCGGGCCEEEEEEEESCCSSSCSEEECTTTCEEEECSSCCCTTTCSEEEEEEEEESGGGTSCCCEEEEEEEEE-CCS
T ss_pred CCCCCcceEEEEEEecCCCCCCcCCceEEcCCCeEEEEccCCCCcccCcEEEEEEEEEcCCCCCeeEEEEEEEEec-ccC
Confidence 98 78999999987432 24569999999999987 4789988 47999999999654 788999999999 999
Q ss_pred CCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCCCCC
Q psy5884 150 TRSPVFQQNTYDVNVSEGASINSTVATITVSRLASGCA 187 (195)
Q Consensus 150 d~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~~ 187 (195)
|++|.|.+..|.+.|+|+ ++|+.|+++.|+|+|.|.+
T Consensus 216 Dn~P~F~~~~y~~~V~En-~~g~~v~~v~a~D~D~~~n 252 (550)
T 3q2v_A 216 DNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNT 252 (550)
T ss_dssp CSCCEESSSEEEEEEESS-CSSCCCEEECEECCSCTTS
T ss_pred CCCCEEecceeEEEEecC-CCCCEEEEEEEEECCCCCC
Confidence 999999999999999999 9999999999999999954
No 4
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1
Probab=100.00 E-value=3.6e-37 Score=262.21 Aligned_cols=181 Identities=28% Similarity=0.405 Sum_probs=164.0
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeCC
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDND 79 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~D 79 (195)
.|++.++||||+ ...|.|.|+|+|+++++++++++|+|.|.|+|||+|.|... +.+.+.|+.+ |+.++++.|+|+|
T Consensus 65 ~l~~~~~LDrE~--~~~y~l~v~A~D~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D 142 (546)
T 1l3w_A 65 WMLVTRPLDREE--YDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDED 142 (546)
T ss_dssp EEEECSCCCTTT--CCEEEEEEEEEESSSCBCSCCEEEEEEEECCSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCS
T ss_pred EEEECCcCCccc--CceEEEEEEEEeCCCCcccceEEEEEEEEecccCcCEecCceeEEEEECCCCCCCEEEEEEEEcCC
Confidence 367889999999 88999999999999888889999999999999999999987 4689999998 9999999999999
Q ss_pred CC---CCceEEEEEEeeCCC--CeecEEEeCCCCEEEEc-eeCCCC--CEEEEEEEEEECCC--CceeEEEEEEEEcCCC
Q psy5884 80 LG---VNAEITYSIYHVSNT--GLHKFRIDPRSGVIETT-GKLIAG--EQYSITVQATDTGG--KSSQTIVEVSVVPGPN 149 (195)
Q Consensus 80 ~~---~n~~~~y~i~~~~~~--~~~~F~id~~tG~i~~~-~~ld~~--~~~~l~v~a~D~~~--~~~~~~v~i~V~~d~n 149 (195)
.| .|+.++|+|..+.+. ..++|.|++.+|.|++. +.|||| ..|.|.|+|+|.|+ +++++++.|+|. |+|
T Consensus 143 ~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~-DvN 221 (546)
T 1l3w_A 143 DNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT-DAN 221 (546)
T ss_dssp CCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEE-CCC
T ss_pred CCCCCCCCEEEEEEeCCCCCcccCCcEEEeCCCceEEEeccCCCcccCceEEEEEEEEECCCCCcceEEEEEEEEe-ecC
Confidence 98 689999999874321 35799999999999985 789988 47999999999874 688899999999 999
Q ss_pred CCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCC--CCC
Q psy5884 150 TRSPVFQQNTYDVNVSEGASINSTVATITVSRLA--SGC 186 (195)
Q Consensus 150 d~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D--~g~ 186 (195)
|++|.|.+..|.+.|+|+ ++|+.|+++.|+|+| .|.
T Consensus 222 Dn~P~F~~~~y~~~V~En-~~gt~v~~v~A~D~D~~~g~ 259 (546)
T 1l3w_A 222 DNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTP 259 (546)
T ss_dssp CCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTST
T ss_pred CCCCccccccceEEEEeC-CCCCEEEEEEEEeCCCCCCC
Confidence 999999999999999999 999999999999999 553
No 5
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A
Probab=100.00 E-value=7.9e-37 Score=244.24 Aligned_cols=178 Identities=23% Similarity=0.339 Sum_probs=153.2
Q ss_pred EEecCCCCCCCCCC---CCeEEEEEEEEECCCC-CeEeeEEEEEEEEecCCCCCccCCC---CcEEEEcCCC-CceEEEE
Q psy5884 2 LVVSKENLDRDPPN---PGKFRFQVIAREKQGT-AASVPVSLTVNLNDINDNAPRLPMI---PPIQIQAGEA-RRQIVKI 73 (195)
Q Consensus 2 ~i~~~~~LD~E~~~---~~~~~l~v~a~D~~~~-~~~~~~~v~I~V~DvNDn~P~f~~~---~~~~v~e~~~-g~~v~~v 73 (195)
.|++.++||||... ...|.|.+.|.|++.+ +++++++|+|.|.|+|||+|.|... +.+.+.|+.+ |+.++++
T Consensus 51 ~l~~~~~LD~E~~~~~~~~~~~l~v~a~d~~~~~~~s~~~~v~I~V~DvNDn~P~F~~~~~~y~~~v~En~~~gt~v~~v 130 (316)
T 3ubf_A 51 AVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTL 130 (316)
T ss_dssp EEEESSCCCGGGSCTTCEEEEEEEEEC-------CCCEEEEEEEEEECTTCCCCEECCSSSSEEEEECTTCCTTCEEEEC
T ss_pred EEEECCccChhhcccccceEEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccCCCCCCEEEEEeCCCCCCCEEEEE
Confidence 47788999999842 3478889999998766 6799999999999999999999886 3688999987 9999999
Q ss_pred EEeeCCCCCCceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCC--CEEEEEEEEEECCC------CceeEEEEEEEE
Q psy5884 74 EATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAG--EQYSITVQATDTGG------KSSQTIVEVSVV 145 (195)
Q Consensus 74 ~a~D~D~~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~--~~~~l~v~a~D~~~------~~~~~~v~i~V~ 145 (195)
.|+|+|.|.| ++|+|.. +...++|.|++.+|.|++.++||+| ..|.|.|.|+|.|+ +++++++.|+|.
T Consensus 131 ~A~D~D~g~n--i~Y~i~~--~~~~~~F~Id~~tG~i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~ 206 (316)
T 3ubf_A 131 QARDPDTDHN--IHYFIVR--DRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIV 206 (316)
T ss_dssp CEECSSTTCC--EEEEEEE--EESSSCEEECTTTCEEEECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEE
T ss_pred EEECCCCCCc--eEEEEEe--CCCCCEEEEECCccEEEECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEE
Confidence 9999999887 9999975 3345799999999999999999987 47999999999874 467788999999
Q ss_pred cCCCCCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCCC
Q psy5884 146 PGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASG 185 (195)
Q Consensus 146 ~d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g 185 (195)
| ||++|.|.+..|.+.|+|+.++|+.|+++.|.|+|.+
T Consensus 207 -d-nDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~Dn~ 244 (316)
T 3ubf_A 207 -G-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADR 244 (316)
T ss_dssp -E-SCCCCEESSSSEEEEEETTCCTTCEEEECCEECTTCC
T ss_pred -c-CCCCCEEcCCCceEEEeCCCCCCCEEEEEEEEeCCCC
Confidence 8 9999999999999999999999999999999999954
No 6
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=100.00 E-value=4.5e-36 Score=266.84 Aligned_cols=177 Identities=28% Similarity=0.422 Sum_probs=162.3
Q ss_pred EecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeCCC
Q psy5884 3 VVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDNDL 80 (195)
Q Consensus 3 i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~D~ 80 (195)
|++.++||||+ ...|.|.|.|+|+++++++++++|+|.|.|+|||+|.|... +.+.|.|+.+ |+.++++.|+|+|.
T Consensus 215 l~~~~~LDrE~--~~~y~l~v~A~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~Gt~V~~v~AtD~D~ 292 (880)
T 1q55_A 215 MLVTRPLDREE--YDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDD 292 (880)
T ss_dssp EEECSCCCTTT--CCEEEEEEEEEESSSCBCSCCEEEEEEEECCSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSC
T ss_pred EEECCccCccc--cCccEEEEEEEECCCCceeeeEEEEEEEEecCCCCCCccCCcEEEEEeCCCCCCceeEEEEEEcCCC
Confidence 67789999999 88999999999999888899999999999999999999987 4689999998 99999999999999
Q ss_pred C---CCceEEEEEEeeCCC--CeecEEEeCCCCEEEEc-eeCCCC--CEEEEEEEEEECCC--CceeEEEEEEEEcCCCC
Q psy5884 81 G---VNAEITYSIYHVSNT--GLHKFRIDPRSGVIETT-GKLIAG--EQYSITVQATDTGG--KSSQTIVEVSVVPGPNT 150 (195)
Q Consensus 81 ~---~n~~~~y~i~~~~~~--~~~~F~id~~tG~i~~~-~~ld~~--~~~~l~v~a~D~~~--~~~~~~v~i~V~~d~nd 150 (195)
| .|+.++|+|..+.+. ..++|.|++.||.|++. +.|||| ..|.|.|+|+|.|+ ++++++|.|+|. |+||
T Consensus 293 g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~-DvND 371 (880)
T 1q55_A 293 NIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT-DAND 371 (880)
T ss_dssp CSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEE-CCCC
T ss_pred CCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEecccCCHHHcceeEEEEEEEECCCCCccceeEEEEEEE-eccC
Confidence 8 689999999874321 45799999999999986 789988 47999999999874 688899999999 9999
Q ss_pred CCCeEecCeeEEEEecCCCCCeEEEEEEEEeCC
Q psy5884 151 RSPVFQQNTYDVNVSEGASINSTVATITVSRLA 183 (195)
Q Consensus 151 ~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D 183 (195)
++|.|....|.+.|+|+ ++|+.|+++.|+|+|
T Consensus 372 n~P~F~~~~y~~~V~En-~~gt~V~~v~A~D~D 403 (880)
T 1q55_A 372 NAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLD 403 (880)
T ss_dssp CCCCBSCSEEEEEEESS-SCCCEEEEECBCCCS
T ss_pred CCCCccccceEEEeecC-CCCcEEEEEEEECCC
Confidence 99999999999999999 999999999999999
No 7
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}
Probab=100.00 E-value=4e-35 Score=249.92 Aligned_cols=177 Identities=24% Similarity=0.335 Sum_probs=160.5
Q ss_pred ecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCCCceEEEEEEeeCCCCC
Q psy5884 4 VSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEARRQIVKIEATDNDLGV 82 (195)
Q Consensus 4 ~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~g~~v~~v~a~D~D~~~ 82 (195)
++.+.||||+ +..|.|.|+|+|+|+++++++++|+|.|+|+|||+|.|... +.+.+.|+..|+.++++.|+|+|.+.
T Consensus 174 ~~~~~LDrE~--~~~y~l~V~A~D~g~~~~s~t~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~g~~v~~v~a~D~D~~~ 251 (550)
T 3q2v_A 174 VLTSGLDRES--YPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNARIATLKVTDDDAPN 251 (550)
T ss_dssp ECSSCCCTTT--CSEEEEEEEEESGGGTSCCCEEEEEEEEECCSCSCCEESSSEEEEEEESSCSSCCCEEECEECCSCTT
T ss_pred EccCCCCccc--CcEEEEEEEEEcCCCCCeeEEEEEEEEecccCCCCCEEecceeEEEEecCCCCCEEEEEEEEECCCCC
Confidence 3468999999 88999999999998889999999999999999999999886 57899999449999999999999998
Q ss_pred Cc--eEEEEEEeeCCCCeecEEEe----CCCCEEEEceeCCCC--CEEEEEEEEEECCC-----CceeEEEEEEEEcCCC
Q psy5884 83 NA--EITYSIYHVSNTGLHKFRID----PRSGVIETTGKLIAG--EQYSITVQATDTGG-----KSSQTIVEVSVVPGPN 149 (195)
Q Consensus 83 n~--~~~y~i~~~~~~~~~~F~id----~~tG~i~~~~~ld~~--~~~~l~v~a~D~~~-----~~~~~~v~i~V~~d~n 149 (195)
|+ .+.|+|.. ...+.|.|+ ..+|.|++.++||+| ..|.|.|+|+|.++ ++++++|.|+|. |+|
T Consensus 252 n~~~~~~ysi~~---~~~~~F~i~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~~~~v~I~V~-DvN 327 (550)
T 3q2v_A 252 TPAWKAVYTVVN---DPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVV-DVN 327 (550)
T ss_dssp STTTCEEEEESS---CSSCCEEEEECTTTCCEEEEESSCCCTTTCSEEEEEEEEEESSCCCSSCCCEEEEEEEEEE-CCC
T ss_pred CCcEEEEEEEEe---CCCCcEEEEecCCCccEEEEecccCCccccceEEEEEEEEeCCCCCCCccceEEEEEEEEE-ecC
Confidence 77 46799964 456789998 689999999999988 47999999999864 678899999999 999
Q ss_pred CCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCCCCC
Q psy5884 150 TRSPVFQQNTYDVNVSEGASINSTVATITVSRLASGCA 187 (195)
Q Consensus 150 d~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~~ 187 (195)
| +|.|....|.+.|+|++++|+.|+++.|.|+|.|.|
T Consensus 328 D-~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n 364 (550)
T 3q2v_A 328 E-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMD 364 (550)
T ss_dssp C-CCEESSSSCEEEEETTCCSSCEEEECCEECCCCSTT
T ss_pred C-CCeEcCcceEEEEecCCCCCCEEEEEeCCCCCCCCC
Confidence 9 999999999999999999999999999999999854
No 8
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-34 Score=239.65 Aligned_cols=178 Identities=22% Similarity=0.345 Sum_probs=159.4
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCCC----CeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEE
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGT----AASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEA 75 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~~----~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a 75 (195)
+|++.+.||||. ...|.|.|.|+|+|++ +++++++++|.|.| |||+|.|.+. |.+.+.|+.+ |+.++++.|
T Consensus 167 ~i~~~~~ld~e~--~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~d-ndn~P~F~~~~y~~~v~En~~~gt~v~~v~A 243 (419)
T 3ubh_A 167 VVRTRGTDLFQL--DMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKA 243 (419)
T ss_dssp EEEECSSSCCCB--TCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEE-SCCCCEESSSCEEEEEETTCCTTCEEEECCE
T ss_pred EEEEeccccccc--ccEEEEEEEEEECCCCccCcccccceEEEEEEEC-CCCCCceecCeeEEEecCCCCCCcEEEEEEE
Confidence 467788999998 7899999999998764 57889999999999 9999999876 5689999998 999999999
Q ss_pred eeCCCCCCceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCCC-----EEEEEEEEEE-CCCCceeEEEEEEEEcCCC
Q psy5884 76 TDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGE-----QYSITVQATD-TGGKSSQTIVEVSVVPGPN 149 (195)
Q Consensus 76 ~D~D~~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~~-----~~~l~v~a~D-~~~~~~~~~v~i~V~~d~n 149 (195)
+|+| |+.++|+|.. .+...++|.|++.+|.|++.++||||. .|.|.|.|+| .++++++++|.|+|. |+|
T Consensus 244 ~D~d---n~~i~Ysi~~-~~~~~~~F~I~~~tG~i~~~~~LD~E~~~~~~~y~l~V~a~dd~~~~s~~~~v~I~V~-DvN 318 (419)
T 3ubh_A 244 KSFA---DREIRYTLKA-QGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVT-DVN 318 (419)
T ss_dssp ECSS---CCCCEEEEEE-SSSCCSSEEECTTTCEEEECSCCCTTCTTSCSEEEEEEEEECTTTSCEEEEEEEEEEE-CCC
T ss_pred ecCC---CCceEEEEec-CCCCCCcEEEECCCCEEEECcccCccccccccEEEEEEEEEeCCCCcEEEEEEEEEEE-ccC
Confidence 9987 6789999974 345568999999999999999999884 5999999995 455888999999999 999
Q ss_pred CCCCeEecCeeEE-EEecCCCCCeEEEEEEEEeCCCCCC
Q psy5884 150 TRSPVFQQNTYDV-NVSEGASINSTVATITVSRLASGCA 187 (195)
Q Consensus 150 d~~P~f~~~~~~~-~v~E~~~~g~~v~~v~a~D~D~g~~ 187 (195)
||+|.|....|.+ .|+|+.++|+.|+++.|.|+|.|.|
T Consensus 319 Dn~P~f~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n 357 (419)
T 3ubh_A 319 DNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSN 357 (419)
T ss_dssp CCCCEESSSEEEEEEEETTCCTTCEEEECCEECSSCGGG
T ss_pred CCCCcccCCcceeEEecCCCCCCCEEEEEEEEeCCCCCC
Confidence 9999999999987 7999999999999999999999865
No 9
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1
Probab=100.00 E-value=2e-35 Score=251.53 Aligned_cols=174 Identities=22% Similarity=0.272 Sum_probs=159.0
Q ss_pred CCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeCC--CC
Q psy5884 6 KENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDND--LG 81 (195)
Q Consensus 6 ~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~D--~~ 81 (195)
.+.||||+ ...|.|.|+|+|+|+++++++++|.|.|.|+|||+|.|... +.+.+.|+ + |+.+++|.|+|+| .|
T Consensus 182 ~~~LD~E~--~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~v~~v~A~D~D~~~g 258 (546)
T 1l3w_A 182 GTGLDREK--FPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGT 258 (546)
T ss_dssp SCCCCTTT--CCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTS
T ss_pred ccCCCccc--CceEEEEEEEEECCCCCcceEEEEEEEEeecCCCCCccccccceEEEEeC-CCCCEEEEEEEEeCCCCCC
Confidence 57899999 88999999999999889999999999999999999999987 57899999 6 9999999999999 77
Q ss_pred CCceEEEEEEeeCCCCeecEEEe--C--CCCEEEEceeCCCCC--EEEEEEEEEECCC-----CceeEEEEEEEEcCCCC
Q psy5884 82 VNAEITYSIYHVSNTGLHKFRID--P--RSGVIETTGKLIAGE--QYSITVQATDTGG-----KSSQTIVEVSVVPGPNT 150 (195)
Q Consensus 82 ~n~~~~y~i~~~~~~~~~~F~id--~--~tG~i~~~~~ld~~~--~~~l~v~a~D~~~-----~~~~~~v~i~V~~d~nd 150 (195)
.|+.++|+|.. ...+.|.|+ + .+|.|++.++||||. .|.|.|.|+|.++ ++++++|.|+|. |+||
T Consensus 259 ~n~~v~y~i~~---~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~-DvND 334 (546)
T 1l3w_A 259 PAWQAVYKIRV---NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVE-DVNE 334 (546)
T ss_dssp TTSCEECCBSC---CTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEE-CCCC
T ss_pred CCcEEEEEEEe---CCCceEEEEecCCCCeEEEEECccCCcccccEEEEEEEEEECCCCCCCCcceeEEEEEEEE-cCCC
Confidence 89999999964 355789995 3 579999999999884 7999999999763 578899999999 9998
Q ss_pred CCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCCCCC
Q psy5884 151 RSPVFQQNTYDVNVSEGASINSTVATITVSRLASGCA 187 (195)
Q Consensus 151 ~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~~ 187 (195)
+|.|.+..|.+.|+|+.++|+.|+++.|+|+|.|.|
T Consensus 335 -~P~f~~~~y~~~V~En~~~g~~v~~v~A~D~D~g~n 370 (546)
T 1l3w_A 335 -APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQI 370 (546)
T ss_dssp -CCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCC
T ss_pred -CCcEecceEEEEEeCCCCCCCEEEEEEEECCCCCCC
Confidence 999999999999999999999999999999999754
No 10
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-34 Score=238.22 Aligned_cols=177 Identities=24% Similarity=0.347 Sum_probs=154.5
Q ss_pred EecCCCCCCCCCC-CCeEEEEEEEEECCCC---CeEeeEEEEEEEEecCCCCCccCCC---CcEEEEcCCC-CceEEEEE
Q psy5884 3 VVSKENLDRDPPN-PGKFRFQVIAREKQGT---AASVPVSLTVNLNDINDNAPRLPMI---PPIQIQAGEA-RRQIVKIE 74 (195)
Q Consensus 3 i~~~~~LD~E~~~-~~~~~l~v~a~D~~~~---~~~~~~~v~I~V~DvNDn~P~f~~~---~~~~v~e~~~-g~~v~~v~ 74 (195)
|++.++||||+.. ...|.|.|.|+|.|.+ +++++++|+|.|+|+|||+|.|... +...+.|+.+ |+.++++.
T Consensus 57 i~~~~~LD~E~~~~~~~~~~~V~a~d~g~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~ 136 (419)
T 3ubh_A 57 VRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQ 136 (419)
T ss_dssp EEESSCCCGGGSCTTCEEEEEEEEEC--CCSSSCCEEEEEEEEEEECCCCSCCEECCSSSSCEEEECTTCCTTCEEEECC
T ss_pred EEECCccCccccCccceEEEEEEEEeCCCCCCCCCcceEEEEEEEEECCCCCCcccCCCCcEEEEEeCCCCCCCEEEEEE
Confidence 6778999999832 1689999999998754 6788899999999999999999876 3588999987 99999999
Q ss_pred EeeCCCCCCceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCC--CEEEEEEEEEECCC------CceeEEEEEEEEc
Q psy5884 75 ATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAG--EQYSITVQATDTGG------KSSQTIVEVSVVP 146 (195)
Q Consensus 75 a~D~D~~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~--~~~~l~v~a~D~~~------~~~~~~v~i~V~~ 146 (195)
|+|+|.|.| ++|+|..+ ...+.|.|++.+|.|++.+.+++| ..|.|.|+|+|.|+ +++++++.|+|.
T Consensus 137 A~D~D~g~n--~~y~i~~~--~~~~~F~I~~~tG~i~~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~- 211 (419)
T 3ubh_A 137 ARDPDTDHN--IHYFIVRD--RTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIV- 211 (419)
T ss_dssp EECSSTTCC--EEEEEEEE--SSSSCEEECTTTCEEEECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEE-
T ss_pred EECCCCCce--eEEEEEeC--CCCCeEEEeCCceEEEEecccccccccEEEEEEEEEECCCCccCcccccceEEEEEEE-
Confidence 999999887 89999763 345799999999999999999876 47999999999864 356778899998
Q ss_pred CCCCCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCCC
Q psy5884 147 GPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASG 185 (195)
Q Consensus 147 d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g 185 (195)
| ||++|.|.+..|.+.|+|+.++|+.|+++.|.|+|.+
T Consensus 212 d-ndn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~dn~ 249 (419)
T 3ubh_A 212 G-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADR 249 (419)
T ss_dssp E-SCCCCEESSSCEEEEEETTCCTTCEEEECCEECSSCC
T ss_pred C-CCCCCceecCeeEEEecCCCCCCcEEEEEEEecCCCC
Confidence 7 9999999999999999999999999999999999844
No 11
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}
Probab=100.00 E-value=1.3e-34 Score=247.11 Aligned_cols=179 Identities=19% Similarity=0.296 Sum_probs=159.4
Q ss_pred EecCC-CCCCCCCCCCeEEEEEEEEECCC---CCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCCCceEEEEEEee
Q psy5884 3 VVSKE-NLDRDPPNPGKFRFQVIAREKQG---TAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEARRQIVKIEATD 77 (195)
Q Consensus 3 i~~~~-~LD~E~~~~~~~~l~v~a~D~~~---~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~g~~v~~v~a~D 77 (195)
|++.+ .||||+ ...|.|.|+|+|+++ ++++++++|+|.|.|+|||+|.|... +...+.|+.+|+.++++.|+|
T Consensus 171 i~~~~~~LD~E~--~~~y~l~V~A~D~~g~p~~~~s~t~~v~I~V~DvNDn~P~f~~~~y~~~V~En~~g~~v~~v~a~D 248 (559)
T 3q2w_A 171 IITVAAGLDREK--VQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIVANLTVTD 248 (559)
T ss_dssp EEECCSCCCTTT--CCEEEEEEEEEHHHHCTTTCCEEEEEEEEEEECCSCSCCEESSSEEEEEEESSCSSEEEEEEEEEC
T ss_pred EEEEeccCCccc--CCEEEEEEEEEECCCCCCCCccceEEEEEEEEeCCCCCCccccccceeEecCCCCCcEEEEEEEEc
Confidence 34444 999999 889999999999865 36899999999999999999999887 468999997899999999999
Q ss_pred CCCCC--CceEEEEEEeeCCCCeecEEE----eCCCCEEEEceeCCCC--CEEEEEEEEEECCC--------CceeEEEE
Q psy5884 78 NDLGV--NAEITYSIYHVSNTGLHKFRI----DPRSGVIETTGKLIAG--EQYSITVQATDTGG--------KSSQTIVE 141 (195)
Q Consensus 78 ~D~~~--n~~~~y~i~~~~~~~~~~F~i----d~~tG~i~~~~~ld~~--~~~~l~v~a~D~~~--------~~~~~~v~ 141 (195)
+|.+. |+.+.|+|.. +...+.|.| +..+|.|++.++|||| ..|.|.|.|+|.+. ++++++|.
T Consensus 249 ~D~~~~~n~~~~y~i~~--g~~~~~F~I~~~~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~g~~~~~~s~~~v~ 326 (559)
T 3q2w_A 249 KDQPHTPAWNAAYRISG--GDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVS 326 (559)
T ss_dssp CSCTTSTTTSBCCEEEE--SCTTCCEEEEECTTTCEEEEEECSCCCTTTCSEEEEEEECCBSSCCCTTCCCCGGGEEEEE
T ss_pred CCCCCCCceeEEEEEec--CCCCCceEEEecCCCCcEEEEeCCCCCCccCceEEEEEEEEcCCccccCCCCCCceEEEEE
Confidence 99976 6789999976 455679999 5678999999999988 47999999999742 57889999
Q ss_pred EEEEcCCCCCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCCCCC
Q psy5884 142 VSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASGCA 187 (195)
Q Consensus 142 i~V~~d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~~ 187 (195)
|+|. |+|| +|.|.+..|.+.|+|+.++|+.|+++.|.|+|.|.|
T Consensus 327 I~V~-DvND-~P~f~~~~~~~~v~En~~~g~~v~~v~A~D~D~g~n 370 (559)
T 3q2w_A 327 VTVI-DVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQ 370 (559)
T ss_dssp EEEE-CCCC-CCEESSSEEEEEEESCCCTTCEEEECCEECSCSSSC
T ss_pred EEEE-eCCC-CCcccccceEEEEeCCCCCCCEEEEEEEECCCCCCC
Confidence 9999 9999 699999999999999999999999999999999854
No 12
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}
Probab=100.00 E-value=7.9e-34 Score=215.10 Aligned_cols=146 Identities=23% Similarity=0.405 Sum_probs=125.9
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCC-CCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeC
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQG-TAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDN 78 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~-~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~ 78 (195)
.|++.+.||||. ...|.|.|.|+|+++ ++++++++|.|.|.|+|||+|.|... |.+.++|+.+ |+.|+++.|+|+
T Consensus 57 ~i~~~~~LDrE~--~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~~v~A~D~ 134 (215)
T 2a4e_A 57 NIHATKTLDREE--RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDA 134 (215)
T ss_dssp EEEECSCCCTTT--CSEEEEEEEEEETTTCCEEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEEECCEECS
T ss_pred EEEECCccCCcc--CCEEEEEEEEEECCCCCcccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEEEEEEEEC
Confidence 467889999999 889999999999985 57899999999999999999999986 5789999987 999999999999
Q ss_pred CC---CCCceEEEEEEeeCCCCeecEEEeCCCCEEEEc-eeCCCC--CEEEEEEEEEECCC----CceeEEEEEEEEcCC
Q psy5884 79 DL---GVNAEITYSIYHVSNTGLHKFRIDPRSGVIETT-GKLIAG--EQYSITVQATDTGG----KSSQTIVEVSVVPGP 148 (195)
Q Consensus 79 D~---~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~-~~ld~~--~~~~l~v~a~D~~~----~~~~~~v~i~V~~d~ 148 (195)
|. |.|+.++|+|..+ ...|.|++.+|.|++. +.||+| ..|.|.|+|+|.|. ++++++|.|+|. |+
T Consensus 135 D~~~~G~n~~i~Y~i~~~----~~~F~Id~~tG~I~~~~~~LD~E~~~~y~l~V~A~D~g~~~~~~s~~~~v~I~V~-Dv 209 (215)
T 2a4e_A 135 DDPTYGNSAKLVYSILEG----QPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLT-DD 209 (215)
T ss_dssp SCTTTCSSSCCEEEEEES----TTTEEECTTTCEEEECSSCCCSSSCSEEEEEEEEETTTTCTTCCEEEEEEEEEEE-C-
T ss_pred CCCCCCCceEEEEEEeCC----CCcEEEeCCccEEEEcccCCCcccCCEEEEEEEEEECCCCCCCceeEEEEEEEEE-EC
Confidence 97 8899999999862 3589999999999999 999987 47999999999874 578899999999 99
Q ss_pred CCCCCe
Q psy5884 149 NTRSPV 154 (195)
Q Consensus 149 nd~~P~ 154 (195)
||++|+
T Consensus 210 NDn~P~ 215 (215)
T 2a4e_A 210 YKDDDK 215 (215)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 999995
No 13
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=100.00 E-value=3.9e-34 Score=254.43 Aligned_cols=175 Identities=23% Similarity=0.276 Sum_probs=159.0
Q ss_pred CCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCCCceEEEEEEeeCC--CCC
Q psy5884 6 KENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEARRQIVKIEATDND--LGV 82 (195)
Q Consensus 6 ~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~g~~v~~v~a~D~D--~~~ 82 (195)
.+.||||+ ...|.|.|+|+|+++++++++++|+|.|.|+|||+|.|... +.+.|.|+.+|+.|++|.|+|+| .+.
T Consensus 331 ~~~LDrE~--~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~gt~V~~v~A~D~D~~~g~ 408 (880)
T 1q55_A 331 GTGLDREK--FPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTP 408 (880)
T ss_dssp SCCCCTTT--CCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESSSCCCEEEEECBCCCSCTTST
T ss_pred cccCCHHH--cceeEEEEEEEECCCCCccceeEEEEEEEeccCCCCCccccceEEEeecCCCCcEEEEEEEECCCCCCCC
Confidence 57899999 88999999999999889999999999999999999999987 57899999339999999999999 678
Q ss_pred CceEEEEEEeeCCCCeecEEEe--C--CCCEEEEceeCCCCC--EEEEEEEEEECCC-----CceeEEEEEEEEcCCCCC
Q psy5884 83 NAEITYSIYHVSNTGLHKFRID--P--RSGVIETTGKLIAGE--QYSITVQATDTGG-----KSSQTIVEVSVVPGPNTR 151 (195)
Q Consensus 83 n~~~~y~i~~~~~~~~~~F~id--~--~tG~i~~~~~ld~~~--~~~l~v~a~D~~~-----~~~~~~v~i~V~~d~nd~ 151 (195)
|+.++|+|.. +..+.|.|+ + .+|.|++.++||||. .|.|.|.|+|.++ ++++++|+|+|. |+||
T Consensus 409 n~~v~Ysi~~---~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~~~~sst~tV~I~V~-DvND- 483 (880)
T 1q55_A 409 AWQAVYKIRV---NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVE-DVNE- 483 (880)
T ss_dssp TSCEECCBSC---CTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEE-CCCC-
T ss_pred CceEEEEEec---CCCceEEEEecCCCceEEEecccCCCcccCCcEEEEEEEEECCCCCCCCcceeEEEEEEEE-eCCC-
Confidence 9999999964 356799995 3 579999999999884 7999999999763 678999999999 9998
Q ss_pred CCeEecCeeEEEEecCCCCCeEEEEEEEEeCCCCCC
Q psy5884 152 SPVFQQNTYDVNVSEGASINSTVATITVSRLASGCA 187 (195)
Q Consensus 152 ~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~~ 187 (195)
+|.|.+..|.+.|+|+.++|+.|+++.|+|+|.|.|
T Consensus 484 ~P~f~~~~y~~~V~En~~~Gt~V~~v~A~D~D~g~n 519 (880)
T 1q55_A 484 APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQI 519 (880)
T ss_dssp CCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCC
T ss_pred CCEEecCceEEEEeCCCCCCCEEEEEEEEeCCCCCC
Confidence 999999999999999999999999999999998754
No 14
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-34 Score=220.69 Aligned_cols=149 Identities=19% Similarity=0.195 Sum_probs=128.8
Q ss_pred EEecCCCCCCCCCCCCeE------------EEEEEEEECCCC--CeEeeEEEEEEEEecCCCCCc----------cCCC-
Q psy5884 2 LVVSKENLDRDPPNPGKF------------RFQVIAREKQGT--AASVPVSLTVNLNDINDNAPR----------LPMI- 56 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~------------~l~v~a~D~~~~--~~~~~~~v~I~V~DvNDn~P~----------f~~~- 56 (195)
.|++.++||||. ...| .|.|.|+|++.+ +++++++|.|.|+|+|||+|. |.+.
T Consensus 66 ~i~~~~~LDrE~--~~~y~~~~~G~p~~~~~l~V~a~D~g~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~ 143 (246)
T 2x2u_A 66 LLYLQRSLDHSS--WEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETR 143 (246)
T ss_dssp EEEESSCBCHHH--HHHHHHTSTTSCCCEEEEEEECC-------CCCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSSC
T ss_pred EEEECCcCChhH--hhhhccccCCCcccceEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccccccccccccCCCc
Confidence 477889999999 7788 999999999987 688899999999999999999 9886
Q ss_pred CcEEEEcCCC-CceEEEEEEeeCCCCCCceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCC--CEEEEEEEEEE-CC
Q psy5884 57 PPIQIQAGEA-RRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAG--EQYSITVQATD-TG 132 (195)
Q Consensus 57 ~~~~v~e~~~-g~~v~~v~a~D~D~~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~--~~~~l~v~a~D-~~ 132 (195)
|.+.+.|+.+ |+.|+++.|+|+|.|.|+.++|+|..+ . ...|.|++.+|.|++.++|||| ..|.|.|.|+| .|
T Consensus 144 y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~--~-~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~d~dg 220 (246)
T 2x2u_A 144 PSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEG--E-GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAG 220 (246)
T ss_dssp CCEEEEBTSCCCEEEECSCHHHHHHCTTSCEEEEEESC--T-TSSEECCTTCCEEEESSCBCTTTCSEEEEEEEEEEC--
T ss_pred EEEEEECCCCCCcEEEEEEEEcCCCCCCcEEEEEEccC--C-CCCEEEECCcCEEEeCCccCccccceEEEEEEEEecCC
Confidence 6799999997 999999999999999999999999852 2 5799999999999999999998 47999999998 34
Q ss_pred C--CceeEEEEEEEEcCCCCCCCeEe
Q psy5884 133 G--KSSQTIVEVSVVPGPNTRSPVFQ 156 (195)
Q Consensus 133 ~--~~~~~~v~i~V~~d~nd~~P~f~ 156 (195)
+ ++++++|.|+|. |+|||+|.|.
T Consensus 221 ~p~~ss~~~v~I~V~-DvNDn~P~F~ 245 (246)
T 2x2u_A 221 AREEVVMVPFPVTVY-DEDDSAPEFE 245 (246)
T ss_dssp -CCEEEEEEEEEEEE-CSSCCSCCCC
T ss_pred CCcceEEEEEEEEEE-EeCCCCCccC
Confidence 3 577889999999 9999999995
No 15
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A
Probab=100.00 E-value=2.7e-31 Score=200.67 Aligned_cols=141 Identities=25% Similarity=0.396 Sum_probs=127.3
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeCC
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDND 79 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~D 79 (195)
.|++.++||||. ...|.|.|.|+|+++ .+++++.|.|.|+|||+|.|... +.+.+.|+.+ |+.++++.|+|+|
T Consensus 63 ~i~~~~~LD~E~--~~~y~l~v~a~D~~~---~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~gt~v~~v~A~D~D 137 (210)
T 3mvs_A 63 VVWLRQPLDRET--KSEFTVEFSVSDHQG---VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPD 137 (210)
T ss_dssp EEEESSCCCTTT--CCEEEEEEEEECSSC---EEEEEEEEEEECCCCCCCEECSCSEEEEEETTCCTTCEEEECCEECCS
T ss_pred EEEECCccCCcc--cceEEEEEEEEeCCC---CEEEEEEEEEEeCCCCCCcCCCceEEEEEECCCCCCCEEEEEEEEeCC
Confidence 367889999999 889999999999865 35779999999999999999887 4789999987 9999999999999
Q ss_pred CCCCceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCC--CEEEEEEEEEECCC---CceeEEEEEEEEcCCCCCC
Q psy5884 80 LGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAG--EQYSITVQATDTGG---KSSQTIVEVSVVPGPNTRS 152 (195)
Q Consensus 80 ~~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~--~~~~l~v~a~D~~~---~~~~~~v~i~V~~d~nd~~ 152 (195)
.|.|+.++|+|.. ..++|.|++.+|.|++.++|||| ..|.|.|.|+|.|+ +++++++.|+|. |+||++
T Consensus 138 ~g~n~~v~Y~i~~----~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~~~~~s~~~~v~I~V~-DvND~~ 210 (210)
T 3mvs_A 138 LGAGGSVLYSFQP----PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIIT-DMQDMD 210 (210)
T ss_dssp SGGGGCEEEEESS----CCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSSCCEEEEEEEEEEE-CCCCCC
T ss_pred CCCCceEEEEEeC----CCCCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECCCCCCCEEEEEEEEEEE-ccCCCC
Confidence 9999999999953 34699999999999999999987 47999999999984 688899999999 999986
No 16
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Probab=99.98 E-value=2.4e-31 Score=201.37 Aligned_cols=142 Identities=26% Similarity=0.373 Sum_probs=126.9
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeCC
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDND 79 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~D 79 (195)
.|++.++||||. ...|.|.|.|+|.++++++++++|.|.|.|+|||+|.|... +.+.+.|+.+ |+.++++.|+|+|
T Consensus 59 ~i~~~~~LDrE~--~~~y~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D 136 (213)
T 3qrb_A 59 WLKVTQPLDREA--IAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136 (213)
T ss_dssp EEEECSCCCTTT--CSEEEEEEEEEETTSCBCSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTTCEEEECCEECCS
T ss_pred EEEECCccCccc--CceEEEEEEEEeCCCCcccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCCcEEEEEEEEeCC
Confidence 367889999999 88999999999999999999999999999999999999986 5789999987 9999999999999
Q ss_pred CC---CCceEEEEEEeeCCC--CeecEEEeCCCCEEEEc-eeCCCC--CEEEEEEEEEECCC--CceeEEEEEEEE
Q psy5884 80 LG---VNAEITYSIYHVSNT--GLHKFRIDPRSGVIETT-GKLIAG--EQYSITVQATDTGG--KSSQTIVEVSVV 145 (195)
Q Consensus 80 ~~---~n~~~~y~i~~~~~~--~~~~F~id~~tG~i~~~-~~ld~~--~~~~l~v~a~D~~~--~~~~~~v~i~V~ 145 (195)
.| .|+.++|+|..+.+. ....|.|++.+|.|++. +.|||| ..|.|.|.|+|.|. ++++++|.|+|.
T Consensus 137 ~~~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~ 212 (213)
T 3qrb_A 137 DDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212 (213)
T ss_dssp CTTTSSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTSCEEEEEEEEEEE
T ss_pred CCCCCcCcEEEEEEccCCCCCCcCCeEEEECCCcEEEEccCCCCCccCceEEEEEEEEeCCCCCceEEEEEEEEEE
Confidence 98 899999999864322 45789999999999997 789988 47999999999764 678888888887
No 17
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A
Probab=99.98 E-value=3.4e-31 Score=201.20 Aligned_cols=142 Identities=25% Similarity=0.335 Sum_probs=126.6
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeCC
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDND 79 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~D 79 (195)
.|++.++||||+ +..|.|.|.|+|.++++++++++|.|.|.|+|||+|.|... |.+.+.|+.+ |+.|++|.|+|+|
T Consensus 59 ~i~~~~~LDrE~--~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D 136 (218)
T 3k5r_A 59 SVSVTRTLDRET--IATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDAD 136 (218)
T ss_dssp EEEECSCCCTTT--CSEEEEEEEEECSSSCEEEEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTTCEEEECCCSCSS
T ss_pred EEEECCcCCccc--CCEEEEEEEEEECCCCceeeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCCCEEEEEEEEeCC
Confidence 467889999999 88999999999999999999999999999999999999876 5789999987 9999999999999
Q ss_pred C--CCCceEEEEEEeeCCC--CeecEEEeCCCCEEEEc---eeCCCCC----EEEEEEEEEECC----CCceeEEEEEEE
Q psy5884 80 L--GVNAEITYSIYHVSNT--GLHKFRIDPRSGVIETT---GKLIAGE----QYSITVQATDTG----GKSSQTIVEVSV 144 (195)
Q Consensus 80 ~--~~n~~~~y~i~~~~~~--~~~~F~id~~tG~i~~~---~~ld~~~----~~~l~v~a~D~~----~~~~~~~v~i~V 144 (195)
. |.|+.++|+|..+... ..++|.|++.+|.|++. +.||+|. .|.|.|.|+|.| +++++++|.|+|
T Consensus 137 ~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~LD~E~~~~~~y~l~V~a~D~gg~~p~~sst~~v~I~V 216 (218)
T 3k5r_A 137 DPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVI 216 (218)
T ss_dssp SSCGGGGCEEEEEEEEESCCSCSCSEEECTTTCEEEECSCGGGCCGGGCSCSEEEEEEEEEECSSTTTTCEEEEEEEEEE
T ss_pred CCCCCCcEEEEEEecCCCCCCcCCEEEEECCccEEEEeccCCCCCccccCCCeEEEEEEEEECCCCCCCeeEEEEEEEEE
Confidence 9 6899999999864321 23689999999999887 6899875 899999999998 478889999998
Q ss_pred E
Q psy5884 145 V 145 (195)
Q Consensus 145 ~ 145 (195)
.
T Consensus 217 ~ 217 (218)
T 3k5r_A 217 D 217 (218)
T ss_dssp E
T ss_pred E
Confidence 7
No 18
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A
Probab=99.97 E-value=3.4e-31 Score=200.72 Aligned_cols=142 Identities=25% Similarity=0.384 Sum_probs=126.4
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeCC
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDND 79 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~D 79 (195)
.|++.++||||. ...|.|.|.|+|.++++++++++|.|.|.|+|||+|.|... |.+.+.|+.+ |+.++++.|+|+|
T Consensus 59 ~i~~~~~LDrE~--~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D 136 (215)
T 2qvi_A 59 QLSVTKPLDREL--IARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDAD 136 (215)
T ss_dssp EEEECSCCCTTT--CSEEEEEEEEEETTTCCCEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCEEEECCCBCSS
T ss_pred EEEECcccCccc--CCeEEEEEEEEECCCCceeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCEEEEEEEEeCC
Confidence 467889999999 88999999999999999999999999999999999999986 5789999987 9999999999999
Q ss_pred C--CCCceEEEEEEeeCCC--CeecEEEeCCCCEEEEc-eeCCCC--CEEEEEEEEEECCC-----CceeEEEEEEEE
Q psy5884 80 L--GVNAEITYSIYHVSNT--GLHKFRIDPRSGVIETT-GKLIAG--EQYSITVQATDTGG-----KSSQTIVEVSVV 145 (195)
Q Consensus 80 ~--~~n~~~~y~i~~~~~~--~~~~F~id~~tG~i~~~-~~ld~~--~~~~l~v~a~D~~~-----~~~~~~v~i~V~ 145 (195)
. |.|+.++|+|..+.+. ....|.|++.+|.|++. ++|||| ..|.|.|.|+|.|+ ++++++|.|+|.
T Consensus 137 ~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~~p~~~ls~t~~v~I~V~ 214 (215)
T 2qvi_A 137 DPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVT 214 (215)
T ss_dssp CTTSTTTCCCCEEEECSSCCSSTTCEEECTTTCEEEECSCCCCTTTCSEEEEEEECCTTTTCTTTSCCCEEEEEEEEC
T ss_pred CCCCCCcEEEEEEecCCCCCCcCCeEEEcCCCcEEEEecCCCCcccCCeEEEEEEEEECCCCCCCCcceEEEEEEEEE
Confidence 8 7899999999874321 45789999999999995 789987 47999999999864 477888888886
No 19
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}
Probab=99.97 E-value=3.1e-30 Score=193.82 Aligned_cols=137 Identities=27% Similarity=0.361 Sum_probs=123.1
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCCC-CeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeC
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGT-AASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDN 78 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~~-~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~ 78 (195)
.|.+.++||||. +..|.|.|.|+|++++ ++++++.|.|.|.|+|||+|.|... +.+.++|+.+ |+.++++.|+|+
T Consensus 54 ~i~~~~~LDrE~--~~~y~l~v~a~D~g~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~ 131 (203)
T 3ppe_A 54 DIYAFERLDREK--KAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDA 131 (203)
T ss_dssp EEEESSCCCTTT--CCEEEEEEEEEETTTTEECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECC
T ss_pred EEEECccccccc--cceEEEEEEEEECCCCCcccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCCcEEEEEEEEcC
Confidence 367789999999 8899999999999876 6889999999999999999999887 5799999987 999999999999
Q ss_pred CC---CCCceEEEEEEeeCCCCeecEEEeCCCCEEEEc-eeCCCC--CEEEEEEEEEECCC---CceeEEEEEEEE
Q psy5884 79 DL---GVNAEITYSIYHVSNTGLHKFRIDPRSGVIETT-GKLIAG--EQYSITVQATDTGG---KSSQTIVEVSVV 145 (195)
Q Consensus 79 D~---~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~-~~ld~~--~~~~l~v~a~D~~~---~~~~~~v~i~V~ 145 (195)
|. |.|+.++|+|..+ ..+|.|+ .+|.|++. ++||+| ..|.|.|.|+|.++ ++++++|.|+|.
T Consensus 132 D~~~~g~n~~i~Y~i~~~----~~~F~I~-~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~G~p~~s~t~~v~I~V~ 202 (203)
T 3ppe_A 132 DDPTVAGHATVTYQIIKG----NEYFTVD-DSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLT 202 (203)
T ss_dssp SCTTSSSTTCEEEEEEES----TTTEEEC-TTSEEEESCSCCCTTTCSEEEEEEEEEETTCCCCSSSEEEEEEEEE
T ss_pred CCcCCCCceEEEEEEeCC----CCcEEEe-CCeEEEECCcCCCcccCCEEEEEEEEEeCCCCCCCeEEEEEEEEEE
Confidence 94 7899999999862 3599999 99999999 999987 47999999999843 688899999987
No 20
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}
Probab=99.97 E-value=9.6e-31 Score=197.23 Aligned_cols=138 Identities=27% Similarity=0.442 Sum_probs=119.5
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECC-CCCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeC
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQ-GTAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDN 78 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~-~~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~ 78 (195)
.|++.++||||+ +..|.|.|.|+|.+ +++++++++|.|.|.|+|||+|.|... |.+.+.|+.+ |+.++++.|+|+
T Consensus 56 ~i~~~~~LDrE~--~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~ 133 (207)
T 3lnd_A 56 DIQATKRLDREE--KPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDA 133 (207)
T ss_dssp EEEECSCCCGGG--CCEEEC----CBSSSCCCCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTTCEEEECCEECS
T ss_pred EEEECCCcCccc--CCEEEEEEEEEECCCCCccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeC
Confidence 367889999999 88999999999998 467889999999999999999999976 5789999987 999999999999
Q ss_pred CC---CCCceEEEEEEeeCCCCeecEEEeCCCCEEEEc-eeCCCC--CEEEEEEEEEECC----CCceeEEEEEEEE
Q psy5884 79 DL---GVNAEITYSIYHVSNTGLHKFRIDPRSGVIETT-GKLIAG--EQYSITVQATDTG----GKSSQTIVEVSVV 145 (195)
Q Consensus 79 D~---~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~-~~ld~~--~~~~l~v~a~D~~----~~~~~~~v~i~V~ 145 (195)
|. |.|+.++|+|.. +...|.|++.+|.|++. +.||+| ..|.|.|+|+|+| +++++++|.|+|.
T Consensus 134 D~~~~g~n~~i~Y~i~~----~~~~F~Id~~tG~i~~~~~~lD~E~~~~y~l~V~A~D~g~~~~~~s~t~~v~I~V~ 206 (207)
T 3lnd_A 134 DDPTYGNSAKVVYSILQ----GQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLT 206 (207)
T ss_dssp SCTTSSSTTCCEEEEEE----SGGGEEECTTTCEEEECCSSCCC--CCEEEEEEEEESGGGCTTCBEEEEEEEEEEE
T ss_pred CCCCCCCCcEEEEEEcC----CCCCEEEcCCCcEEEECcccCCcccCCEEEEEEEEEECCCCCCCcEeEEEEEEEEe
Confidence 98 889999999986 34599999999999999 899987 4799999999987 4678889999887
No 21
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A
Probab=99.96 E-value=4.8e-28 Score=193.37 Aligned_cols=143 Identities=22% Similarity=0.323 Sum_probs=122.4
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCC----CCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEE
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQG----TAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEA 75 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~----~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a 75 (195)
.|.+.++||||. ...|.|.|.|+|+|+ ++++++++++|.|.| |||+|.|... |.+.+.|+.+ |+.++++.|
T Consensus 162 ~i~~~~~lD~e~--~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~d-nDn~P~F~~~~y~~~v~En~~~gt~v~~v~A 238 (316)
T 3ubf_A 162 VVRTRGTDLFQL--DMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKA 238 (316)
T ss_dssp EEEECSSCCCCT--TCEEEEEEEEEESCC-------CBCCCEEEEEEE-SCCCCEESSSSEEEEEETTCCTTCEEEECCE
T ss_pred EEEECCcCCccc--CcEEEEEEEEEeCCCCCCCccccceEEEEEEEEc-CCCCCEEcCCCceEEEeCCCCCCCEEEEEEE
Confidence 477889999999 889999999999985 367888999999999 9999999987 4689999998 999999999
Q ss_pred eeCCCCCCceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCCC-----EEEEEEEEE-ECCCCceeEEEEEEEEcCCC
Q psy5884 76 TDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGE-----QYSITVQAT-DTGGKSSQTIVEVSVVPGPN 149 (195)
Q Consensus 76 ~D~D~~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~~-----~~~l~v~a~-D~~~~~~~~~v~i~V~~d~n 149 (195)
+|+| |+.++|+|.. .+...++|.|++.+|.|++.++||+|. .|.|.|.|+ |.|+++++++|.|+|. |+|
T Consensus 239 ~D~D---n~~i~Y~i~~-~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~~~~y~l~V~A~dd~g~~~~~~~v~I~V~-DvN 313 (316)
T 3ubf_A 239 KSFA---DREIRYTLKA-QGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVT-DVN 313 (316)
T ss_dssp ECTT---CCCEEEEEEE-ESSCTTTEEECTTTCEEEECSCCCSSCTTSCSEEEEEEEEEESSSSCEEEEEEEEEEE-CC-
T ss_pred EeCC---CCEEEEEEEc-CCCCCCeEEEECCeEEEEECCcCCccccCCCceEEEEEEEEECCCCCEEEEEEEEEEE-ecC
Confidence 9998 6789999973 245568999999999999999999884 699999999 6777899999999999 999
Q ss_pred CCC
Q psy5884 150 TRS 152 (195)
Q Consensus 150 d~~ 152 (195)
|+|
T Consensus 314 Dn~ 316 (316)
T 3ubf_A 314 DNA 316 (316)
T ss_dssp ---
T ss_pred CCC
Confidence 986
No 22
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=9.1e-29 Score=170.79 Aligned_cols=112 Identities=26% Similarity=0.368 Sum_probs=99.8
Q ss_pred EEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeCCCCCCceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCC
Q psy5884 41 VNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIA 118 (195)
Q Consensus 41 I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~D~~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~ 118 (195)
++|.|+|||+|.|.+. |.+.+.|+.+ |+.++++.|+|+|.|.|+.++|+|.........+|.|++.+|.|++.++|||
T Consensus 2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~ 81 (119)
T 2yst_A 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDR 81 (119)
T ss_dssp CCCCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSCCCT
T ss_pred CeEecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECccCCc
Confidence 4689999999999987 5789999998 9999999999999999999999997532223578999999999999999998
Q ss_pred C--CEEEEEEEEEECCC--CceeEEEEEEEEcCCCCCCC
Q psy5884 119 G--EQYSITVQATDTGG--KSSQTIVEVSVVPGPNTRSP 153 (195)
Q Consensus 119 ~--~~~~l~v~a~D~~~--~~~~~~v~i~V~~d~nd~~P 153 (195)
| ..|.|.|+|+|.|. ++++++|.|+|. |+||++|
T Consensus 82 E~~~~y~l~V~A~D~g~p~~s~~~~v~I~V~-DvNDn~P 119 (119)
T 2yst_A 82 EEVNQLRFTVMARDRGQPPKTDKATVVLNIK-DENDNVP 119 (119)
T ss_dssp TTCSEEEEEEEECCSBTTBCCEEEEEEEEEE-CSTTCCC
T ss_pred ccCCEEEEEEEEEECCCCCcEEEEEEEEEEE-eccCCCC
Confidence 8 47999999999886 578899999999 9999998
No 23
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}
Probab=99.95 E-value=3.7e-28 Score=194.26 Aligned_cols=139 Identities=26% Similarity=0.415 Sum_probs=120.7
Q ss_pred EecC-CCCCCCCCCCCeEEEEEEEEECCCC--CeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEee
Q psy5884 3 VVSK-ENLDRDPPNPGKFRFQVIAREKQGT--AASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATD 77 (195)
Q Consensus 3 i~~~-~~LD~E~~~~~~~~l~v~a~D~~~~--~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D 77 (195)
|.+. +.||||. +..|.|.|.|+|+|+| +++++++|+|.|.|+|||+|.|... |.+.+.|+.+ |+.+++|.|+|
T Consensus 164 i~~~~~~LD~E~--~~~y~l~V~a~D~g~p~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D 241 (322)
T 2a62_A 164 IKTALPNMDREA--KEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKAND 241 (322)
T ss_dssp EEECSSCCCGGG--CSEEEEEEEEEESCSSSSCCBCCEEEEEEECCCCCCCCCCSCSEEEEEECSCCSSCCEEEEEECCC
T ss_pred EEecccCCCccc--CCeEEEEEEEEECCCCCCCceeEEEEEEEEEecCCCCCeecCCCceeEeECCCCCCcEEEEEEEEe
Confidence 4555 8999999 8899999999999887 4899999999999999999999986 5789999987 99999999999
Q ss_pred CCCCCCceEEEEEEeeCCCCeecEEEe----CCCCEEEEceeCCCC--CEEEEEEEEEECCC---------CceeEEEEE
Q psy5884 78 NDLGVNAEITYSIYHVSNTGLHKFRID----PRSGVIETTGKLIAG--EQYSITVQATDTGG---------KSSQTIVEV 142 (195)
Q Consensus 78 ~D~~~n~~~~y~i~~~~~~~~~~F~id----~~tG~i~~~~~ld~~--~~~~l~v~a~D~~~---------~~~~~~v~i 142 (195)
+|.|.|+.++|+|.. +...+.|.|+ +.+|.|++.++|||| ..|.|.|+|+|.|. ++++++|.|
T Consensus 242 ~D~g~n~~i~Y~i~~--g~~~~~F~I~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~g~pp~~~~~~~~s~~~~V~I 319 (322)
T 2a62_A 242 QDIGENAQSSYDIID--GDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKI 319 (322)
T ss_dssp SSCGGGTCCEEEEC-----CCSSBCCBCCTTTSEEEEEBCSCCCCSSCCEEEEEEEEECCCSSCTTSSCCCCCCCCEEEE
T ss_pred CCCCCCceEEEEEEC--CCCCCcEEEeccCCCceEEEEECCcCCcccCCeEEEEEEEEECCCCCccccCCCcccEEEEEE
Confidence 999999999999975 4456799998 457999999999988 47999999999874 356788888
Q ss_pred EEE
Q psy5884 143 SVV 145 (195)
Q Consensus 143 ~V~ 145 (195)
+|.
T Consensus 320 ~V~ 322 (322)
T 2a62_A 320 VVE 322 (322)
T ss_dssp EEC
T ss_pred EEC
Confidence 773
No 24
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A
Probab=99.95 E-value=1.3e-27 Score=180.46 Aligned_cols=133 Identities=16% Similarity=0.305 Sum_probs=118.4
Q ss_pred CCCCccCCCCc---EEEEcCCC-CceEEEEEEeeCCCCCCceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCCC--E
Q psy5884 48 DNAPRLPMIPP---IQIQAGEA-RRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGE--Q 121 (195)
Q Consensus 48 Dn~P~f~~~~~---~~v~e~~~-g~~v~~v~a~D~D~~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~~--~ 121 (195)
|++|.|....+ +.|+|+.+ |+.++++.|+|+|. +.+.|+|.. +...++|.|++.+|.|++.++||||. .
T Consensus 3 n~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~---~~~~y~i~~--~~~~~~F~Id~~tG~i~~~~~LD~E~~~~ 77 (210)
T 3mvs_A 3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDN---DPLVFGVSG--EEASRFFAVEPDTGVVWLRQPLDRETKSE 77 (210)
T ss_dssp CCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTC---CCCEEEEES--HHHHHHEEECTTTCEEEESSCCCTTTCCE
T ss_pred CCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCC---CcEEEEEeC--CCCCCcEEEeCCCCEEEECCccCCcccce
Confidence 57999988743 79999998 99999999999995 458999964 33457899999999999999999984 7
Q ss_pred EEEEEEEEECCCCceeEEEEEEEEcCCCCCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCCCCC
Q psy5884 122 YSITVQATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASGCA 187 (195)
Q Consensus 122 ~~l~v~a~D~~~~~~~~~v~i~V~~d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~~ 187 (195)
|.|.|.|+|.++ ..++++.|+|. |+||++|.|.+..|.+.|+|+.++|+.|+++.|+|+|.|.|
T Consensus 78 y~l~v~a~D~~~-~~~~~v~I~V~-DvNDn~P~f~~~~y~~~v~E~~~~gt~v~~v~A~D~D~g~n 141 (210)
T 3mvs_A 78 FTVEFSVSDHQG-VITRKVNIQVG-DVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAG 141 (210)
T ss_dssp EEEEEEEECSSC-EEEEEEEEEEE-CCCCCCCEECSCSEEEEEETTCCTTCEEEECCEECCSSGGG
T ss_pred EEEEEEEEeCCC-CEEEEEEEEEE-eCCCCCCcCCCceEEEEEECCCCCCCEEEEEEEEeCCCCCC
Confidence 999999999765 46789999999 99999999999999999999999999999999999999854
No 25
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*
Probab=99.94 E-value=1.8e-26 Score=177.35 Aligned_cols=140 Identities=24% Similarity=0.292 Sum_probs=112.0
Q ss_pred cCCCCCCCCCC-CCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEE-----EEEe
Q psy5884 5 SKENLDRDPPN-PGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVK-----IEAT 76 (195)
Q Consensus 5 ~~~~LD~E~~~-~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~-----v~a~ 76 (195)
+.+.||||... ...+.+.+.|.+.+ .+..+.+.|+|.|.|+|||+|.|.+. |.+.+.|+.+ |+.|++ +.|+
T Consensus 79 t~~~LDrE~~~~~~~~~~~v~~~~~~-~~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~~~v~A~ 157 (242)
T 4apx_B 79 TGRVLDRDPPMNIHSIVVQVQCVNKK-VGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGAT 157 (242)
T ss_dssp TTSCCCCSTTTCCCEEEEEEEEEETT-TCCEEEEEEEEEEECCCCCCCEESSSCEEEEEETTCCTTCEEECTTTTTTSEE
T ss_pred cCCceeccCCCceEEEEEEEEeECCC-CCeEEEEEEEEEEEeCCCCCCcccceeeeeEeeeccCCCCEEEEeeecccccc
Confidence 45789999832 22344555555653 24567788999999999999999987 4689999998 999976 7899
Q ss_pred eCCCCCCceEEEEEEeeCCC--CeecEEEeC-CCCEEEEceeCCCC--CEEEEEEEEEECCC-----CceeEEEEEEEE
Q psy5884 77 DNDLGVNAEITYSIYHVSNT--GLHKFRIDP-RSGVIETTGKLIAG--EQYSITVQATDTGG-----KSSQTIVEVSVV 145 (195)
Q Consensus 77 D~D~~~n~~~~y~i~~~~~~--~~~~F~id~-~tG~i~~~~~ld~~--~~~~l~v~a~D~~~-----~~~~~~v~i~V~ 145 (195)
|+|.|.|+.++|+|..+... ....|.|++ .+|.|++.+.|||| ..|.|.|+|+|+|. +++.++|+|+|+
T Consensus 158 D~D~g~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~G~~~~~~~~~~~~vtVnVe 236 (242)
T 4apx_B 158 DIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNERRTTTTTLTVDLE 236 (242)
T ss_dssp CCSSGGGGCEEEEEECCTTSTTHHHHEECSSTTTCCEEECSCCCTTTCCEEEEEEEEEECCSSGGGCCEEEEEEEEEEE
T ss_pred cCCCCcCCceEEEEecCCCCcccccceEEcCCCceEEEECCcCChhhCCEEEEEEEEEECCcCchhcccCCceEEEEEe
Confidence 99999999999999864322 245799985 58999999999988 47999999999886 345678888887
No 26
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=4.9e-27 Score=160.79 Aligned_cols=108 Identities=24% Similarity=0.314 Sum_probs=96.3
Q ss_pred EEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeCCCCCCceEEEEEEeeC-CCCeecEEEeCCCCEEEEceeCC
Q psy5884 41 VNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDNDLGVNAEITYSIYHVS-NTGLHKFRIDPRSGVIETTGKLI 117 (195)
Q Consensus 41 I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~D~~~n~~~~y~i~~~~-~~~~~~F~id~~tG~i~~~~~ld 117 (195)
|+|+|+|||+|.|.+. |.+.++|+.+ |+.++++.|+|+|.|.|+.++|+|.... +....+|.|++.+|.|++.++||
T Consensus 2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD 81 (114)
T 2ee0_A 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLD 81 (114)
T ss_dssp CCCCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCCC
T ss_pred CeEeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccCC
Confidence 4689999999999987 5799999998 9999999999999999999999996421 12457899999999999999999
Q ss_pred CC--CEEEEEEEEEECCCCceeEEEEEEEEcCCC
Q psy5884 118 AG--EQYSITVQATDTGGKSSQTIVEVSVVPGPN 149 (195)
Q Consensus 118 ~~--~~~~l~v~a~D~~~~~~~~~v~i~V~~d~n 149 (195)
|| ..|.|.|+|+|.|.++++++|.|+|. |+|
T Consensus 82 ~E~~~~y~l~V~A~D~g~~~~~~~v~I~V~-DvN 114 (114)
T 2ee0_A 82 REETAIHKVTVLASDGSSTPARATVTINVT-DVN 114 (114)
T ss_dssp TTTCSEEEEEEEEESSSSSCEEEEEEEEEE-CCC
T ss_pred cccCcEEEEEEEEEECCCCceEEEEEEEEE-ECC
Confidence 88 47999999999998888999999999 886
No 27
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A
Probab=99.94 E-value=9.9e-26 Score=170.65 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=113.8
Q ss_pred cEEEEcCCCCceEEEEEEeeCCCCCCceEEEEEEeeC--CCCeecEEEeCCCCEEEEceeCCCCC--EEEEEEEEEECCC
Q psy5884 58 PIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVS--NTGLHKFRIDPRSGVIETTGKLIAGE--QYSITVQATDTGG 133 (195)
Q Consensus 58 ~~~v~e~~~g~~v~~v~a~D~D~~~n~~~~y~i~~~~--~~~~~~F~id~~tG~i~~~~~ld~~~--~~~l~v~a~D~~~ 133 (195)
.+.|+|+.+|+.++++.|.|.|.+.|+.++|+|..+. +...+.|.|++.+|.|++.++||||. .|.|.|.|+|.|+
T Consensus 6 ~~~V~En~~g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~ 85 (215)
T 2qvi_A 6 PINLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING 85 (215)
T ss_dssp CEEEESSCCCCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTT
T ss_pred cEEEcCCCCCCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCcccCCeEEEEEEEEECCC
Confidence 5889999988888899999999999999999998521 12357999999999999999999984 7999999999887
Q ss_pred --CceeEEEEEEEEcCCCCCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCC
Q psy5884 134 --KSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLAS 184 (195)
Q Consensus 134 --~~~~~~v~i~V~~d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~ 184 (195)
+++++++.|+|. |+|||+|.|.+..|.+.|+|++++|+.|+++.|+|+|.
T Consensus 86 ~~~~~~~~v~I~V~-DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~ 137 (215)
T 2qvi_A 86 NQVENPIDIVINVI-DMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADD 137 (215)
T ss_dssp CCCEEEEEEEEEEE-CCCCCCCBCSSSEEEEEECSSCCTTCEEEECCCBCSSC
T ss_pred CceeeeEEEEEEEe-ECCCCCCcccCceeEEEEeCCCCCCCEEEEEEEEeCCC
Confidence 467789999999 99999999999999999999999999999999999998
No 28
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}
Probab=99.93 E-value=4.1e-25 Score=167.18 Aligned_cols=123 Identities=24% Similarity=0.315 Sum_probs=109.1
Q ss_pred CcEEEEcCC--C-CceEEEEEEeeCCCCCCceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCC--CEEEEEEEEEEC
Q psy5884 57 PPIQIQAGE--A-RRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAG--EQYSITVQATDT 131 (195)
Q Consensus 57 ~~~~v~e~~--~-g~~v~~v~a~D~D~~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~--~~~~l~v~a~D~ 131 (195)
+.+.+.|+. + |+.++++ |+|+|.| ++.++|+|.. +.....|.|++.+|.|++.++|||| ..|.|.|.|+|.
T Consensus 6 ~~~~v~En~~~p~~~~v~~v-a~D~D~g-n~~i~Y~l~~--~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~ 81 (215)
T 2a4e_A 6 NQFFVIEEYTGPDPVLVGRL-HSDIDSG-DGNIKYILSG--EGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDR 81 (215)
T ss_dssp CEEEEETTCCSSSCEEEEEC-CCTTCCS-SSCEEEEEEE--TTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEET
T ss_pred eeEEEeccCCCCCCEEEEEE-EECCCCC-CCeEEEEEEC--CCCCCeEEEECCceEEEECCccCCccCCEEEEEEEEEEC
Confidence 457889984 4 7888888 8999998 7889999975 2234689999999999999999998 479999999998
Q ss_pred CC---CceeEEEEEEEEcCCCCCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCC
Q psy5884 132 GG---KSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLAS 184 (195)
Q Consensus 132 ~~---~~~~~~v~i~V~~d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~ 184 (195)
+. +++++++.|+|. |+||++|.|.+..|.+.|+|++++|+.|+++.|+|+|.
T Consensus 82 ~~~~~~~~~~~v~I~V~-DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~~v~A~D~D~ 136 (215)
T 2a4e_A 82 DTNRPLEPPSEFIVKVQ-DINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADD 136 (215)
T ss_dssp TTCCEEEEEEEEEEEEE-CCCCCCCEESSSSEEEEEETTCCTTCEEEECCEECSSC
T ss_pred CCCCcccccEEEEEEEe-eCCCCCCCccCCceEEEEECCCCCCCEEEEEEEEECCC
Confidence 74 467789999999 99999999999999999999999999999999999997
No 29
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Probab=99.92 E-value=1.9e-24 Score=163.48 Aligned_cols=124 Identities=21% Similarity=0.363 Sum_probs=109.4
Q ss_pred cEEEEcCCC---CceEEEEEEeeCCCCCCceEEEEEEeeC--CCCeecEEEeCCCCEEEEceeCCCCC--EEEEEEEEEE
Q psy5884 58 PIQIQAGEA---RRQIVKIEATDNDLGVNAEITYSIYHVS--NTGLHKFRIDPRSGVIETTGKLIAGE--QYSITVQATD 130 (195)
Q Consensus 58 ~~~v~e~~~---g~~v~~v~a~D~D~~~n~~~~y~i~~~~--~~~~~~F~id~~tG~i~~~~~ld~~~--~~~l~v~a~D 130 (195)
.+.|+|+.+ ++.++++.| |.|. |+.++|+|.... +...++|.|++.+|.|++.++||||. .|.|.|.|+|
T Consensus 6 ~~~V~En~~~~~~~~v~~v~a-D~d~--n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D 82 (213)
T 3qrb_A 6 AISCPENEKGEFPKNLVQIKS-NRDK--ETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVS 82 (213)
T ss_dssp EEEEETTCCSSSSEEEEECCC-GGGG--TSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEE
T ss_pred CEEEeCCCCCCCCcEEEEEEE-CCCC--CceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCcccCceEEEEEEEEe
Confidence 578999986 567888888 6665 888999998532 12345899999999999999999984 7999999999
Q ss_pred CCC--CceeEEEEEEEEcCCCCCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCCC
Q psy5884 131 TGG--KSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASG 185 (195)
Q Consensus 131 ~~~--~~~~~~v~i~V~~d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g 185 (195)
.++ +++++++.|+|. |+||++|.|.+..|.+.|+|+.++|+.|+++.|+|+|.|
T Consensus 83 ~~~~~~~~~~~v~I~V~-DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~ 138 (213)
T 3qrb_A 83 SNGEAVEDPMEIVITVT-DQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD 138 (213)
T ss_dssp TTSCBCSCCEEEEEEEE-CCSCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCT
T ss_pred CCCCcccceEEEEEEEE-EccCCCCccCCCceEEEEECCCCCCcEEEEEEEEeCCCC
Confidence 876 677899999999 999999999999999999999999999999999999998
No 30
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}
Probab=99.92 E-value=4.5e-24 Score=160.21 Aligned_cols=120 Identities=17% Similarity=0.249 Sum_probs=108.1
Q ss_pred cEEEEcCCC-C--ceEEEEEEeeCCCCCCceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCCC--EEEEEEEEEECC
Q psy5884 58 PIQIQAGEA-R--RQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGE--QYSITVQATDTG 132 (195)
Q Consensus 58 ~~~v~e~~~-g--~~v~~v~a~D~D~~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~~--~~~l~v~a~D~~ 132 (195)
.+.|.|+.+ | ..++++. +|+|.|.+ +|+|.. +...++|.|++.+|.|++.++||||. .|.|.|.|+|.|
T Consensus 6 ~~~V~En~~~~~~~~v~~v~-~D~D~g~~---~Y~i~~--~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g 79 (203)
T 3ppe_A 6 RMHIREEIDSPLPHHVGKLT-SSVGNKNA---MYIIEG--ESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRR 79 (203)
T ss_dssp EEEEETTCCSSSCEEEEECC-BCCCCTTE---EEEEEE--TTBTTTEEEETTTTEEEESSCCCTTTCCEEEEEEEEEETT
T ss_pred cEEEEccCCCCCCEEEEEEE-ecCCCCCc---EEEEec--CCCCCeEEEECCcCEEEECccccccccceEEEEEEEEECC
Confidence 588999987 5 7788888 99999877 999985 44456999999999999999999984 799999999998
Q ss_pred C---CceeEEEEEEEEcCCCCCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCC
Q psy5884 133 G---KSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLAS 184 (195)
Q Consensus 133 ~---~~~~~~v~i~V~~d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~ 184 (195)
. +++++.+.|+|. |+|||+|.|.+..|.+.|+|+.++|+.|+++.|+|+|.
T Consensus 80 ~~~~~~~~~~v~I~V~-DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~ 133 (203)
T 3ppe_A 80 NNRSLEPPSKFIIKVS-DINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADD 133 (203)
T ss_dssp TTEECSCCEEEEEEEE-CCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSC
T ss_pred CCCcccceEEEEEEEc-CCCCCCCCccCCccEEEEeccCCCCcEEEEEEEEcCCC
Confidence 5 577899999999 99999999999999999999999999999999999994
No 31
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}
Probab=99.91 E-value=4.4e-25 Score=166.21 Aligned_cols=122 Identities=19% Similarity=0.304 Sum_probs=103.9
Q ss_pred cEEEEcCCC---CceEEEEEEeeCCCCCCceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCC--CEEEEEEEEEECC
Q psy5884 58 PIQIQAGEA---RRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAG--EQYSITVQATDTG 132 (195)
Q Consensus 58 ~~~v~e~~~---g~~v~~v~a~D~D~~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~--~~~~l~v~a~D~~ 132 (195)
.+.+.|+.+ +..++++ |+|+|.| ++.++|+|.. +....+|.|++.+|.|++.++|||| ..|.|.|.|+|.+
T Consensus 6 ~~~v~En~~~~~~~~v~~~-a~D~D~g-~~~i~Y~l~~--~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~ 81 (207)
T 3lnd_A 6 QFFLLEEYTGSDYQYVGKL-HSDQDRG-DGSLKYILSG--DGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRR 81 (207)
T ss_dssp CEEEESCBCSSSCEEEEEC-CCTTCCS-STTBCCCCCS--SSBTTTEEECTTTCEEEECSCCCGGGCCEEEC----CBSS
T ss_pred ccEEEeecCCCCCEEEEEE-EeCCCCC-CceEEEEEEC--CCCCCeEEEECCceEEEECCCcCcccCCEEEEEEEEEECC
Confidence 478899876 3577777 9999998 6779999963 3334689999999999999999988 4799999999986
Q ss_pred C---CceeEEEEEEEEcCCCCCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCC
Q psy5884 133 G---KSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLAS 184 (195)
Q Consensus 133 ~---~~~~~~v~i~V~~d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~ 184 (195)
. +++++++.|+|. |+||++|.|.+..|.+.|+|+.++|+.|+++.|+|+|.
T Consensus 82 ~~~~~~~~~~v~I~V~-DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~ 135 (207)
T 3lnd_A 82 TGRPVEPESEFIIKIH-DINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADD 135 (207)
T ss_dssp SCCCCSCCCCCEEEEE-CCSCCCCEESCSEEEEEEESSCCTTCEEEECCEECSSC
T ss_pred CCCccccEEEEEEEEC-ccCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCC
Confidence 3 677889999999 99999999999999999999999999999999999998
No 32
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A
Probab=99.91 E-value=3.7e-24 Score=162.37 Aligned_cols=122 Identities=25% Similarity=0.380 Sum_probs=108.7
Q ss_pred cEEEEcCCC-C--ceEEEEEEeeCCCCCCceEEEEEEee--CCCCeecEEEeCCCCEEEEceeCCCC--CEEEEEEEEEE
Q psy5884 58 PIQIQAGEA-R--RQIVKIEATDNDLGVNAEITYSIYHV--SNTGLHKFRIDPRSGVIETTGKLIAG--EQYSITVQATD 130 (195)
Q Consensus 58 ~~~v~e~~~-g--~~v~~v~a~D~D~~~n~~~~y~i~~~--~~~~~~~F~id~~tG~i~~~~~ld~~--~~~~l~v~a~D 130 (195)
.+.|+|+.+ | ..++++.|.|+|. .++|+|... .+...+.|.|++.+|.|++.++|||| ..|.|.|.|+|
T Consensus 7 ~~~V~En~~~g~~~~v~~v~a~D~d~----~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D 82 (218)
T 3k5r_A 7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTD 82 (218)
T ss_dssp CEEEETTCCSSCCEEEEECBCTTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEC
T ss_pred cEEEecCCCCCCCEEEEEEEecCCCc----eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCcccCCEEEEEEEEEE
Confidence 689999987 6 7889999998876 599999752 13345799999999999999999998 47999999999
Q ss_pred CCC--CceeEEEEEEEEcCCCCCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCC
Q psy5884 131 TGG--KSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLAS 184 (195)
Q Consensus 131 ~~~--~~~~~~v~i~V~~d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~ 184 (195)
.++ +++++++.|+|. |+||++|.|.+..|.+.|+|++++|+.|+++.|+|+|.
T Consensus 83 ~g~~~~~~~~~v~I~V~-DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~ 137 (218)
T 3k5r_A 83 ASGKTLEGPVPLEVIVI-DQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADD 137 (218)
T ss_dssp SSSCEEEEEEEEEEEEE-CTTCCCCCCCSCSEEEEEETTCCTTCEEEECCCSCSSS
T ss_pred CCCCceeeeEEEEEEEE-eCCCCCCcccCCceEEEEECCCCCCCEEEEEEEEeCCC
Confidence 887 457788999999 99999999999999999999999999999999999999
No 33
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.1e-25 Score=173.68 Aligned_cols=132 Identities=11% Similarity=-0.012 Sum_probs=111.4
Q ss_pred ccCCC-CcEEEEcCCC-CceEEEEEEeeCCCCC--CceEE------EEEEeeCCCCeecEEEeCCCCEEEEceeCCCCC-
Q psy5884 52 RLPMI-PPIQIQAGEA-RRQIVKIEATDNDLGV--NAEIT------YSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGE- 120 (195)
Q Consensus 52 ~f~~~-~~~~v~e~~~-g~~v~~v~a~D~D~~~--n~~~~------y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~~- 120 (195)
.|.+. |.+.|.|+.+ |+.|++|.|+|+|.|. +..+. |++... ...+|.|++.+|.|++.++||||.
T Consensus 2 ~F~~~~Y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~---~~~~F~Id~~tG~i~~~~~LDrE~~ 78 (246)
T 2x2u_A 2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLH---ENNWIRIQEDTGLLYLQRSLDHSSW 78 (246)
T ss_dssp EESCSEEEEEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEECGGGCEEE---ECCSEEECTTTCEEEESSCBCHHHH
T ss_pred CccCCceEEEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeeccccceeccCC---CCCEEEECCCcEEEEECCcCChhHh
Confidence 46665 5689999998 9999999999999854 44555 555432 457899999999999999999884
Q ss_pred -EE------------EEEEEEEECCC----CceeEEEEEEEEcCCCCCCCe----------EecCeeEEEEecCCCCCeE
Q psy5884 121 -QY------------SITVQATDTGG----KSSQTIVEVSVVPGPNTRSPV----------FQQNTYDVNVSEGASINST 173 (195)
Q Consensus 121 -~~------------~l~v~a~D~~~----~~~~~~v~i~V~~d~nd~~P~----------f~~~~~~~~v~E~~~~g~~ 173 (195)
.| .|.|.|+|.|. ++++++|.|+|. |+|||+|. |.+..|.+.|+|+.++|+.
T Consensus 79 ~~y~~~~~G~p~~~~~l~V~a~D~g~~~~~~~~~~~v~I~V~-DvNDn~P~~~~~~~~~~~F~~~~y~~~v~En~~~Gt~ 157 (246)
T 2x2u_A 79 EKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFS-FFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTF 157 (246)
T ss_dssp HHHHHTSTTSCCCEEEEEEECC-------CCCTTTEEEEEEE-EESSCCCCGGGCCHHHHHSCSSCCCEEEEBTSCCCEE
T ss_pred hhhccccCCCcccceEEEEEEEcCCCCCCcccceEEEEEEEE-ECCCCCCccccccccccccCCCcEEEEEECCCCCCcE
Confidence 58 99999999885 467889999999 99999999 9999999999999999999
Q ss_pred EEEEEEEeCCCCCC
Q psy5884 174 VATITVSRLASGCA 187 (195)
Q Consensus 174 v~~v~a~D~D~g~~ 187 (195)
|+++.|+|+|.|.|
T Consensus 158 v~~v~A~D~D~g~n 171 (246)
T 2x2u_A 158 HQFRLLPVQFLCPQ 171 (246)
T ss_dssp EECSCHHHHHHCTT
T ss_pred EEEEEEEcCCCCCC
Confidence 99999999999865
No 34
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-21 Score=134.65 Aligned_cols=109 Identities=21% Similarity=0.266 Sum_probs=90.7
Q ss_pred cCCCCCccCCCCcEEEEc--CCC-CceEEEEEEeeCCCCCCceEEEEEEeeC--CCCeecEEEeCCCCEEEEceeCCCCC
Q psy5884 46 INDNAPRLPMIPPIQIQA--GEA-RRQIVKIEATDNDLGVNAEITYSIYHVS--NTGLHKFRIDPRSGVIETTGKLIAGE 120 (195)
Q Consensus 46 vNDn~P~f~~~~~~~v~e--~~~-g~~v~~v~a~D~D~~~n~~~~y~i~~~~--~~~~~~F~id~~tG~i~~~~~ld~~~ 120 (195)
.+.+.|.|.... +.+.| +.+ |+.|++|. +|+|.|.|+.++|+|.... .....+|.|++.+|.|++.++||||.
T Consensus 5 ~~r~~p~f~~~~-~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~ 82 (123)
T 2yqg_A 5 SSGQKRAWITAP-VALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREE 82 (123)
T ss_dssp SSCSCCSSCCCC-EEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTT
T ss_pred ccccCCccCCCC-EEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCccc
Confidence 367899997753 44555 446 99999999 6999999999999998631 12457899999999999999999984
Q ss_pred --EEEEEEEEEECCC--CceeEEEEEEEEcCCCCCCCeEec
Q psy5884 121 --QYSITVQATDTGG--KSSQTIVEVSVVPGPNTRSPVFQQ 157 (195)
Q Consensus 121 --~~~l~v~a~D~~~--~~~~~~v~i~V~~d~nd~~P~f~~ 157 (195)
.|.|.|.|+|.|. ++++++|.|+|. |+||++|.|.+
T Consensus 83 ~~~y~l~V~A~D~g~p~~~~~~~v~I~V~-DvNDn~P~F~~ 122 (123)
T 2yqg_A 83 TPFFLLTGYALDARGNNVEKPLELRIKVL-DINDNEPVFTQ 122 (123)
T ss_dssp BSEEEEEEEEECTTCCEEEEEECCEEEEE-CTTCCCCCCCC
T ss_pred CceEEEEEEEEECCCCceEEEEEEEEEEE-EcCCCCCEeCC
Confidence 7999999999886 466788999999 99999999975
No 35
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*
Probab=99.82 E-value=2.6e-19 Score=137.46 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=101.6
Q ss_pred cEEEEcCCC-CceEEEEEE-eeCCCCCCceEEEEEEeeCCCCeecEEEeCCCCEEEEc---eeCCCCC-----EEEEEEE
Q psy5884 58 PIQIQAGEA-RRQIVKIEA-TDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETT---GKLIAGE-----QYSITVQ 127 (195)
Q Consensus 58 ~~~v~e~~~-g~~v~~v~a-~D~D~~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~---~~ld~~~-----~~~l~v~ 127 (195)
.+.|.|+.+ |+.+..+.+ .|.|.++|+.+.|+|.. ....+|.|++.+|.+.+. +.||+|. .+.+.+.
T Consensus 23 ~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~---~~~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~~~v~ 99 (242)
T 4apx_B 23 IVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKD---NVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQVQ 99 (242)
T ss_dssp EEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEES---CGGGCEEEETTTTEEEECCTTSCCCCSTTTCCCEEEEEEE
T ss_pred EEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEec---CCCceEEECCCCCEEEEEecCCceeccCCCceEEEEEEEE
Confidence 467999998 998876544 45556788899999963 345689999999999875 5688873 3455666
Q ss_pred EEECCC-CceeEEEEEEEEcCCCCCCCeEecCeeEEEEecCCCCCeEEEE-----EEEEeCCCCCC
Q psy5884 128 ATDTGG-KSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVAT-----ITVSRLASGCA 187 (195)
Q Consensus 128 a~D~~~-~~~~~~v~i~V~~d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~-----v~a~D~D~g~~ 187 (195)
+.+.+. ....+.|.|.|. |+||++|.|.+..|.+.|+|++++|+.|++ +.|+|+|.|.|
T Consensus 100 ~~~~~~~~~~~~~V~I~V~-DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D~g~N 164 (242)
T 4apx_B 100 CVNKKVGTVIYHEVRIVVR-DRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPN 164 (242)
T ss_dssp EEETTTCCEEEEEEEEEEE-CCCCCCCEESSSCEEEEEETTCCTTCEEECTTTTTTSEECCSSGGG
T ss_pred eECCCCCeEEEEEEEEEEE-eCCCCCCcccceeeeeEeeeccCCCCEEEEeeecccccccCCCCcC
Confidence 666543 455678999999 999999999999999999999999999976 78999999965
No 36
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A
Probab=99.81 E-value=1.5e-19 Score=122.73 Aligned_cols=95 Identities=23% Similarity=0.376 Sum_probs=72.0
Q ss_pred CcEEEEcCCC-Cce--EEEEEEeeCCCCCCceEEEEEEeeC--CCCeecEEEeCCCCEEEEceeCCCC--CEEEEEEEEE
Q psy5884 57 PPIQIQAGEA-RRQ--IVKIEATDNDLGVNAEITYSIYHVS--NTGLHKFRIDPRSGVIETTGKLIAG--EQYSITVQAT 129 (195)
Q Consensus 57 ~~~~v~e~~~-g~~--v~~v~a~D~D~~~n~~~~y~i~~~~--~~~~~~F~id~~tG~i~~~~~ld~~--~~~~l~v~a~ 129 (195)
+.+.|+|+.+ |+. ++++ |.|.+.|+.++|+|.... +...++|.|++.+|.|++.++|||| ..|.|.|.|+
T Consensus 7 ~~~~v~En~~~gt~~~v~~v---d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~ 83 (110)
T 1ncg_A 7 PPINLPENSRGPFPQELVRI---RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV 83 (110)
T ss_dssp CCEEECSSCCCCSSEEEEEC---CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEE
T ss_pred eeEEEeCCCCCCCcEEEEEE---eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEEEEEEEE
Confidence 5689999998 885 4443 788888999999998531 2345789999999999999999998 4799999999
Q ss_pred ECCC--CceeEEEEEEEEcCCCCCCCeE
Q psy5884 130 DTGG--KSSQTIVEVSVVPGPNTRSPVF 155 (195)
Q Consensus 130 D~~~--~~~~~~v~i~V~~d~nd~~P~f 155 (195)
|.|. ++++++|.|+|. |+||++|.|
T Consensus 84 D~g~p~~~~~~~v~I~V~-DvNDn~P~F 110 (110)
T 1ncg_A 84 DINGNQVENPIDIVINVI-DMNDNRPEF 110 (110)
T ss_dssp CTTSCBCSCCEEEEEEEC----------
T ss_pred ECCCCceeeEEEEEEEEE-ECCCCCCCC
Confidence 9885 678899999999 999999998
No 37
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=9.8e-20 Score=126.18 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=85.3
Q ss_pred CcEEEEcCCC-CceEEEEEEeeCCCCCCceE---EEEEEeeCCCCeecEEEeCCCCEEEEceeCCCCC------EEEEEE
Q psy5884 57 PPIQIQAGEA-RRQIVKIEATDNDLGVNAEI---TYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGE------QYSITV 126 (195)
Q Consensus 57 ~~~~v~e~~~-g~~v~~v~a~D~D~~~n~~~---~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~~------~~~l~v 126 (195)
+.+.|+|+.+ |+.|++| |+|+|.+. +.+ +|+|.. +...++|.||+.||.|++.++||||. .|.|.|
T Consensus 13 ~~~~V~E~~~~Gt~V~~v-a~D~d~~~-~~i~~~~Y~i~~--~~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l~v 88 (125)
T 1wyj_A 13 ITYSVLEETDRGSLVGNL-AKDLGLSL-RELITRGAQILS--KGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHF 88 (125)
T ss_dssp CCEEECSSCCTTCEEEES-TTTTTCCH-HHHHHTTCEEEC--SSSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCCBCC
T ss_pred EEEEEECCCCCCCEEEEE-EecCCCCC-CceeeEEEEEec--CCCCCeEEEECCccEEEECccccchhhcccCCcEEEEE
Confidence 4688999997 9999999 99998764 234 899985 44567999999999999999999874 489999
Q ss_pred EEEECCCCceeEEEEEEEEcCCCCCCCeEecCeeEEE
Q psy5884 127 QATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVN 163 (195)
Q Consensus 127 ~a~D~~~~~~~~~v~i~V~~d~nd~~P~f~~~~~~~~ 163 (195)
.|.+.. +...++|.|+|. |+|||+|.|.+..|.++
T Consensus 89 ~a~~~~-p~~~~~V~I~V~-DvNDN~P~F~~~~y~vs 123 (125)
T 1wyj_A 89 QVLLKS-PVQFIQGEIQLQ-DVNDHAPEFMEDESGPS 123 (125)
T ss_dssp EEEETT-TTEEECCCEEEC-CCCCCCCCCCCCCCCCC
T ss_pred EEEECC-CCeEEEEEEEEE-EccCCCCcCCCcEEEEe
Confidence 999854 456889999999 99999999999988654
No 38
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A
Probab=99.72 E-value=5.2e-17 Score=107.69 Aligned_cols=85 Identities=21% Similarity=0.248 Sum_probs=71.3
Q ss_pred CcEEEEcCC--C-CceEEEEEEeeCCCCCCceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCCC--EEEEEEEEEEC
Q psy5884 57 PPIQIQAGE--A-RRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGE--QYSITVQATDT 131 (195)
Q Consensus 57 ~~~~v~e~~--~-g~~v~~v~a~D~D~~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~~--~~~l~v~a~D~ 131 (195)
+.+.++|+. + |+.++++. +|+|.| |+.++|+|.. +....+|.||+.+|.|++.++||||. .|.|.|.|+|.
T Consensus 5 ~~~~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~--~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~ 80 (98)
T 1zxk_A 5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSG--DGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDF 80 (98)
T ss_dssp CEEEECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEE--TTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEET
T ss_pred ceEEEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeC--CCCCCEEEEECCccEEEECccCCCcCCCeEEEEEEEEEC
Confidence 457899987 3 88999997 999999 9999999975 22335899999999999999999984 79999999999
Q ss_pred CC---CceeEEEEEEEE
Q psy5884 132 GG---KSSQTIVEVSVV 145 (195)
Q Consensus 132 ~~---~~~~~~v~i~V~ 145 (195)
|. ++++++|.|+|.
T Consensus 81 g~~~~l~~~~~v~I~V~ 97 (98)
T 1zxk_A 81 ETNKPLEPPSEFIIKVQ 97 (98)
T ss_dssp TTCCBSSCCEEEEEEEC
T ss_pred CCCCCcceeEEEEEEEE
Confidence 85 578888998886
No 39
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Probab=99.72 E-value=7.6e-17 Score=107.06 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=73.4
Q ss_pred CcEEEEcCCC---CceEEEEEEeeCCCCCCceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCCC--EEEEEEEEEEC
Q psy5884 57 PPIQIQAGEA---RRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGE--QYSITVQATDT 131 (195)
Q Consensus 57 ~~~~v~e~~~---g~~v~~v~a~D~D~~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~~--~~~l~v~a~D~ 131 (195)
+.+.++|+.+ |+.+++|. +|+|.| |+.++|+|.. +...++|.|++.+|.|++.++||||. .|.|.|.|+|.
T Consensus 6 ~~~~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~--~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~ 81 (99)
T 1zvn_A 6 NQFFVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSG--EGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDR 81 (99)
T ss_dssp CEEEEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEE--TTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEET
T ss_pred cEEEEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeC--CCCCceEEEeCCCCCEEECeecCCccCCeEEEEEEEEEC
Confidence 4588999964 78999999 999999 9999999975 23336899999999999999999984 79999999998
Q ss_pred C-C--CceeEEEEEEEE
Q psy5884 132 G-G--KSSQTIVEVSVV 145 (195)
Q Consensus 132 ~-~--~~~~~~v~i~V~ 145 (195)
| + +++.++|.|+|.
T Consensus 82 G~~p~l~~~~~v~I~V~ 98 (99)
T 1zvn_A 82 RTGRPMEPESEFIIKIQ 98 (99)
T ss_dssp TTCCBSSCCEEEEEEEE
T ss_pred CCCCCcceeEEEEEEEe
Confidence 7 3 578889999887
No 40
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Probab=99.66 E-value=6.5e-16 Score=102.64 Aligned_cols=85 Identities=22% Similarity=0.351 Sum_probs=71.3
Q ss_pred CcEEEEcCCC---CceEEEEEEeeCCCCCCceEEEEEEee--CCCCeecEEEeCCCCEEEEceeCCCCC--EEEEEEEEE
Q psy5884 57 PPIQIQAGEA---RRQIVKIEATDNDLGVNAEITYSIYHV--SNTGLHKFRIDPRSGVIETTGKLIAGE--QYSITVQAT 129 (195)
Q Consensus 57 ~~~~v~e~~~---g~~v~~v~a~D~D~~~n~~~~y~i~~~--~~~~~~~F~id~~tG~i~~~~~ld~~~--~~~l~v~a~ 129 (195)
..+.|+|+.+ |+.+++|.|+|+|. .++|+|... .+...+.|.|++.+|.|++.++||||. .|.|.|.|+
T Consensus 5 ~~~~V~En~~~~~g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~ 80 (99)
T 3k6d_A 5 PSISIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETT 80 (99)
T ss_dssp CCEEEETTCCSCSSEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEE
T ss_pred CcEEEeCCCCCCCCcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEEEEEEEE
Confidence 3588999985 89999999999997 699999742 234457899999999999999999984 799999999
Q ss_pred ECCCC--ceeEEEEEEEE
Q psy5884 130 DTGGK--SSQTIVEVSVV 145 (195)
Q Consensus 130 D~~~~--~~~~~v~i~V~ 145 (195)
|.|++ ++.++|.|+|.
T Consensus 81 D~g~~~l~~~~~v~I~V~ 98 (99)
T 3k6d_A 81 DENGKTIEGPVDLEILVI 98 (99)
T ss_dssp CTTCCEEEEEEEEEEEEE
T ss_pred ECCCCceeeEEEEEEEEE
Confidence 98874 55677878776
No 41
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}
Probab=99.65 E-value=2e-15 Score=100.33 Aligned_cols=84 Identities=24% Similarity=0.360 Sum_probs=70.5
Q ss_pred cEEEEcCCC-C--ceEEEEEEeeCCCCCCceEEEEEEee--CCCCeecEEEeCCCCEEEEceeCCCCC--EEEEEEEEEE
Q psy5884 58 PIQIQAGEA-R--RQIVKIEATDNDLGVNAEITYSIYHV--SNTGLHKFRIDPRSGVIETTGKLIAGE--QYSITVQATD 130 (195)
Q Consensus 58 ~~~v~e~~~-g--~~v~~v~a~D~D~~~n~~~~y~i~~~--~~~~~~~F~id~~tG~i~~~~~ld~~~--~~~l~v~a~D 130 (195)
++.++||.+ | +.+++|.|+|+|. .++|+|... .+...+.|.||+.+|.|++.++||||. .|.|.|.|+|
T Consensus 6 ~~~v~EN~~~g~~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D 81 (99)
T 3k6i_A 6 PILIPENQRPPFPRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTD 81 (99)
T ss_dssp CEEEETTCCSSSCEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEE
T ss_pred cEEEeCCCCCCCCeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEEEE
Confidence 578999987 5 8899999999998 699999742 123457899999999999999999984 7999999999
Q ss_pred CCCC--ceeEEEEEEEE
Q psy5884 131 TGGK--SSQTIVEVSVV 145 (195)
Q Consensus 131 ~~~~--~~~~~v~i~V~ 145 (195)
.|++ ++.+++.|+|.
T Consensus 82 ~g~~~l~~~~~v~I~V~ 98 (99)
T 3k6i_A 82 LSGKIIDGPVRLDISVI 98 (99)
T ss_dssp TTSCEEEEEEEEEEEEE
T ss_pred CCCCceeeeEEEEEEEE
Confidence 9874 56677888776
No 42
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}
Probab=99.64 E-value=1.9e-15 Score=100.54 Aligned_cols=84 Identities=25% Similarity=0.380 Sum_probs=70.7
Q ss_pred cEEEEcCCC---CceEEEEEEeeCCCCCCceEEEEEEeeC--CCCeecEEEeCCCCEEEEceeCCCCC--EEEEEEEEEE
Q psy5884 58 PIQIQAGEA---RRQIVKIEATDNDLGVNAEITYSIYHVS--NTGLHKFRIDPRSGVIETTGKLIAGE--QYSITVQATD 130 (195)
Q Consensus 58 ~~~v~e~~~---g~~v~~v~a~D~D~~~n~~~~y~i~~~~--~~~~~~F~id~~tG~i~~~~~ld~~~--~~~l~v~a~D 130 (195)
.+.++||.+ |+.+++|.|+|+|. .++|+|.... +.....|.||+.||.|++.++||||. .|.|.|.|+|
T Consensus 7 ~~~V~EN~~~~~g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D 82 (100)
T 3k6f_A 7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTD 82 (100)
T ss_dssp CEEEETTCCSSSCEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEC
T ss_pred cEEEeCCCCCCCCcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEEEE
Confidence 588999986 68999999999997 5999997521 23457899999999999999999984 7999999999
Q ss_pred CCCC--ceeEEEEEEEE
Q psy5884 131 TGGK--SSQTIVEVSVV 145 (195)
Q Consensus 131 ~~~~--~~~~~v~i~V~ 145 (195)
.|++ ++.++|.|+|.
T Consensus 83 ~g~p~l~~~~~v~I~V~ 99 (100)
T 3k6f_A 83 ASGKTLEGPVPLEVIVI 99 (100)
T ss_dssp TTCCEEEEEEEEEEEEE
T ss_pred CCCCcccceEEEEEEEE
Confidence 9874 56677888776
No 43
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Probab=99.64 E-value=1.6e-15 Score=101.79 Aligned_cols=87 Identities=20% Similarity=0.326 Sum_probs=71.2
Q ss_pred cEEEEcCCC---CceEEEEEEeeCCCCCCceEEEEEEeeCCC--CeecEEEeCCCCEEEEceeCCCCC--EEEEEEEEEE
Q psy5884 58 PIQIQAGEA---RRQIVKIEATDNDLGVNAEITYSIYHVSNT--GLHKFRIDPRSGVIETTGKLIAGE--QYSITVQATD 130 (195)
Q Consensus 58 ~~~v~e~~~---g~~v~~v~a~D~D~~~n~~~~y~i~~~~~~--~~~~F~id~~tG~i~~~~~ld~~~--~~~l~v~a~D 130 (195)
.+.|+|+.+ +..++++.| |.|.|+.++|+|...... ..+.|.||+.||.|++.++||||. .|.|.|.|+|
T Consensus 10 ~~~V~En~~~~~~~~v~~v~A---d~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D 86 (105)
T 2omz_B 10 PISCPENEKGPFPKNLVQIKS---NKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVS 86 (105)
T ss_dssp CCCEESSCCSSSSEEEEECEE---GGGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEC
T ss_pred CEEEeCCCCCCCCcEEEEEEC---CCCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEE
Confidence 478899987 778999999 335699999999863211 145899999999999999999984 7999999999
Q ss_pred CCC--CceeEEEEEEEEcCC
Q psy5884 131 TGG--KSSQTIVEVSVVPGP 148 (195)
Q Consensus 131 ~~~--~~~~~~v~i~V~~d~ 148 (195)
.|. ++++++|.|+|. |+
T Consensus 87 ~g~p~~~~~~~v~I~V~-Dv 105 (105)
T 2omz_B 87 SNGNAVEDPMEILITVT-DQ 105 (105)
T ss_dssp TTSCBSSCCEEEEEEEE-C-
T ss_pred CCCCceeeEEEEEEEEE-eC
Confidence 887 567789999998 64
No 44
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=95.64 Aligned_cols=52 Identities=27% Similarity=0.386 Sum_probs=48.8
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCC
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPM 55 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~ 55 (195)
.|++.++||||. +..|.|.|.|+|.|+++++++++|.|.|+|+|||+|.|.+
T Consensus 71 ~i~~~~~LDrE~--~~~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F~~ 122 (123)
T 2yqg_A 71 ELNVTSILDREE--TPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122 (123)
T ss_dssp EEEECSCCBTTT--BSEEEEEEEEECTTCCEEEEEECCEEEEECTTCCCCCCCC
T ss_pred EEEECcccCccc--CceEEEEEEEEECCCCceEEEEEEEEEEEEcCCCCCEeCC
Confidence 367889999999 8899999999999999999999999999999999999975
No 45
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A
Probab=99.44 E-value=9.7e-14 Score=93.85 Aligned_cols=50 Identities=26% Similarity=0.517 Sum_probs=38.5
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCcc
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRL 53 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f 53 (195)
.|++.++||||+ ...|.|.|.|+|.|+|+++++++|.|.|+|+|||+|.|
T Consensus 61 ~i~~~~~LDrE~--~~~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F 110 (110)
T 1ncg_A 61 QLSVTKPLDREL--IARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110 (110)
T ss_dssp EEEECSCCCTTT--CCEEEEEEEEECTTSCBCSCCEEEEEEEC---------
T ss_pred EEEECCcCCccc--CCeEEEEEEEEECCCCceeeEEEEEEEEEECCCCCCCC
Confidence 367889999999 88999999999999999999999999999999999998
No 46
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}
Probab=99.37 E-value=8.7e-14 Score=92.94 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=68.9
Q ss_pred cEEEEcCCC-CceEEEEEEeeCCCCCC--ceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCCC------EEEEEEEE
Q psy5884 58 PIQIQAGEA-RRQIVKIEATDNDLGVN--AEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGE------QYSITVQA 128 (195)
Q Consensus 58 ~~~v~e~~~-g~~v~~v~a~D~D~~~n--~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~~------~~~l~v~a 128 (195)
.++|+|+.+ |+.|++| |.|+|.+.+ ..++|+|.+ +...++|.|++.||.|++.++||||. .|.+.+.+
T Consensus 6 ~~~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~--~~~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~~v 82 (103)
T 1wuz_A 6 HYSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVAS--KDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEV 82 (103)
T ss_dssp EEEEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBC--SSCSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEEEE
T ss_pred EEEEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEe--CCCccEEEEECCeEEEEECCcCccccccCCCCcEEEEEEE
Confidence 578999987 9999999 999886432 357899975 44567999999999999999999874 23444444
Q ss_pred EECCCCceeEEEEEEEEcCCCCC
Q psy5884 129 TDTGGKSSQTIVEVSVVPGPNTR 151 (195)
Q Consensus 129 ~D~~~~~~~~~v~i~V~~d~nd~ 151 (195)
... .+...+.+.|.|. |+|||
T Consensus 83 ~~~-~p~~~~~v~I~V~-DiNDN 103 (103)
T 1wuz_A 83 IVD-RPLQVFHVEVEVR-DINDN 103 (103)
T ss_dssp EET-TTTEEEEEEEEEE-CCSCC
T ss_pred EEC-CCCEEEEEEEEEE-EcCCC
Confidence 443 3345889999999 99996
No 47
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=6e-12 Score=86.14 Aligned_cols=48 Identities=27% Similarity=0.521 Sum_probs=45.3
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCC
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAP 51 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P 51 (195)
.|++.++||||. ...|.|.|.|+|.|+++++++++|+|.|.|+|||+|
T Consensus 72 ~I~~~~~LD~E~--~~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P 119 (119)
T 2yst_A 72 WLSVLHRIDREE--VNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119 (119)
T ss_dssp EEEECSCCCTTT--CSEEEEEEEECCSBTTBCCEEEEEEEEEECSTTCCC
T ss_pred EEEECccCCccc--CCEEEEEEEEEECCCCCcEEEEEEEEEEEeccCCCC
Confidence 367889999999 889999999999999999999999999999999998
No 48
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}
Probab=99.07 E-value=4.9e-11 Score=82.23 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=43.1
Q ss_pred EEecCCCCCCCCCCC----CeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCCC
Q psy5884 2 LVVSKENLDRDPPNP----GKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIP 57 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~----~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~ 57 (195)
.|++.++||||+ . ..|.|.+.|.+. .| + ..++|.|.|+|+|||+|.|.+..
T Consensus 65 ~i~~~~~LDRE~--~c~~~~~y~l~v~a~~~-~p-~-~~~~V~I~V~DvNDN~P~F~~~~ 119 (125)
T 1wyj_A 65 NLLLKEKLDREE--LCGSTNPCILHFQVLLK-SP-V-QFIQGEIQLQDVNDHAPEFMEDE 119 (125)
T ss_dssp EEEESSCCCSTT--TCTTCSSCCBCCEEEET-TT-T-EEECCCEEECCCCCCCCCCCCCC
T ss_pred EEEECccccchh--hcccCCcEEEEEEEEEC-CC-C-eEEEEEEEEEEccCCCCcCCCcE
Confidence 477889999999 6 789999999975 33 3 47799999999999999998864
No 49
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=4.3e-11 Score=81.25 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=42.0
Q ss_pred EEEEcCCCCCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCCCCC
Q psy5884 142 VSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASGCA 187 (195)
Q Consensus 142 i~V~~d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~~ 187 (195)
++|. |+||++|.|.+..|.+.|+|+.++|+.|+++.|+|+|.|.|
T Consensus 2 ~~V~-DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n 46 (114)
T 2ee0_A 2 SSGS-SGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSN 46 (114)
T ss_dssp CCCC-CCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCC
T ss_pred CeEe-eCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCC
Confidence 4577 99999999999999999999999999999999999999855
No 50
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Probab=98.85 E-value=5.1e-09 Score=69.83 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=39.5
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEec
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDI 46 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~Dv 46 (195)
.|++.++||||+ +..|.|.|.|+|.|+|+++++++|.|.|+|+
T Consensus 63 ~I~~~~~LDrE~--~~~y~l~V~A~D~g~p~~~~~~~v~I~V~Dv 105 (105)
T 2omz_B 63 WLKVTEPLDRER--IATYTLFSHAVSSNGNAVEDPMEILITVTDQ 105 (105)
T ss_dssp EEEECSCCCTTT--CCEEEEEEEEECTTSCBSSCCEEEEEEEEC-
T ss_pred EEEECccCCcCC--CCeEEEEEEEEECCCCceeeEEEEEEEEEeC
Confidence 367889999999 8999999999999999999999999999986
No 51
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}
Probab=98.78 E-value=1.7e-08 Score=66.62 Aligned_cols=41 Identities=27% Similarity=0.405 Sum_probs=38.8
Q ss_pred EecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEe
Q psy5884 3 VVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLND 45 (195)
Q Consensus 3 i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~D 45 (195)
|.+.++||||+ ...|.|.|.|+|.|+|+++++++|.|.|+|
T Consensus 60 i~~~~~LDrE~--~~~y~l~V~A~D~g~p~l~~~~~v~I~V~D 100 (100)
T 3k6f_A 60 VSVTRTLDRET--IATYQLYVETTDASGKTLEGPVPLEVIVID 100 (100)
T ss_dssp EEECSCCCTTT--CSEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred EEECcccCCcC--CCEEEEEEEEEECCCCcccceEEEEEEEEC
Confidence 67889999999 899999999999999999999999999987
No 52
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}
Probab=98.77 E-value=2.3e-08 Score=65.88 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=38.8
Q ss_pred EecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEe
Q psy5884 3 VVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLND 45 (195)
Q Consensus 3 i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~D 45 (195)
|.+.++||||+ +..|.|.|.|+|.|+|+++++++|.|.|+|
T Consensus 59 i~~~~~LDrE~--~~~y~l~v~A~D~g~~~l~~~~~v~I~V~D 99 (99)
T 3k6i_A 59 VSVTRPLDREA--IANYELEVEVTDLSGKIIDGPVRLDISVID 99 (99)
T ss_dssp EEECSCCCTTT--CCEEEEEEEEEETTSCEEEEEEEEEEEEEC
T ss_pred EEECcccCCcc--CCEEEEEEEEEECCCCceeeeEEEEEEEEC
Confidence 67889999999 899999999999999999999999999987
No 53
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Probab=98.76 E-value=2.3e-08 Score=65.89 Aligned_cols=42 Identities=26% Similarity=0.410 Sum_probs=39.1
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEe
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLND 45 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~D 45 (195)
.|.+.++||||+ +..|.|.|.|+|+|+++++++++|.|.|+|
T Consensus 58 ~i~~~~~LDrE~--~~~y~l~V~A~D~g~~~l~~~~~v~I~V~D 99 (99)
T 3k6d_A 58 EVSVTKALDREA--IPSYQLQVETTDENGKTIEGPVDLEILVID 99 (99)
T ss_dssp EEEECSCCCTTT--CCEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred EEEECcCCCccc--CceEEEEEEEEECCCCceeeEEEEEEEEEC
Confidence 367889999999 889999999999999999999999999987
No 54
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Probab=98.75 E-value=2e-08 Score=66.19 Aligned_cols=41 Identities=15% Similarity=0.400 Sum_probs=38.0
Q ss_pred EecCCCCCCCCCCCCeEEEEEEEEECC-CCCeEeeEEEEEEEEe
Q psy5884 3 VVSKENLDRDPPNPGKFRFQVIAREKQ-GTAASVPVSLTVNLND 45 (195)
Q Consensus 3 i~~~~~LD~E~~~~~~~~l~v~a~D~~-~~~~~~~~~v~I~V~D 45 (195)
|.+.++||||+ +..|.|.|.|+|.| +|+++++++|.|.|.|
T Consensus 58 i~~~~~LDrE~--~~~y~l~V~A~D~G~~p~l~~~~~v~I~V~D 99 (99)
T 1zvn_A 58 IHAIQRLDREE--RSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99 (99)
T ss_dssp EEECSCCCTTT--CSEEEEEEEEEETTTCCBSSCCEEEEEEEEC
T ss_pred EEECeecCCcc--CCeEEEEEEEEECCCCCCcceeEEEEEEEeC
Confidence 67789999999 89999999999998 5899999999999987
No 55
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A
Probab=98.71 E-value=2.5e-08 Score=65.58 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=38.3
Q ss_pred EEecCCCCCCCCCCCCeEEEEEEEEECCC-CCeEeeEEEEEEEEe
Q psy5884 2 LVVSKENLDRDPPNPGKFRFQVIAREKQG-TAASVPVSLTVNLND 45 (195)
Q Consensus 2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~-~~~~~~~~v~I~V~D 45 (195)
.|++.++||||+ ++.|.|.|.|+|+|+ |+++++++|.|.|+|
T Consensus 56 ~i~~~~~LDrE~--~~~y~l~v~A~D~g~~~~l~~~~~v~I~V~D 98 (98)
T 1zxk_A 56 DIHAIKRLDREE--KAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98 (98)
T ss_dssp EEEECSCCCTTT--CSEEEEEEEEEETTTCCBSSCCEEEEEEECC
T ss_pred EEEECccCCCcC--CCeEEEEEEEEECCCCCCcceeEEEEEEEEC
Confidence 367889999999 899999999999987 789999999999986
No 56
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}
Probab=97.84 E-value=1.4e-05 Score=52.71 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=30.2
Q ss_pred EEecCCCCCCCCCC----CCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCC
Q psy5884 2 LVVSKENLDRDPPN----PGKFRFQVIAREKQGTAASVPVSLTVNLNDINDN 49 (195)
Q Consensus 2 ~i~~~~~LD~E~~~----~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn 49 (195)
.|++.++||||+.. ...|.+.+.+ . .| + ...+|.|.|+|+|||
T Consensus 57 ~i~~~~~LDRE~~~~~~~~~~~~~~v~~--~-~p-~-~~~~v~I~V~DiNDN 103 (103)
T 1wuz_A 57 ILFVNSRIDREELCGRSAECSIHLEVIV--D-RP-L-QVFHVEVEVRDINDN 103 (103)
T ss_dssp EEEECSCCSHHHHCSSSSSCEEEEEEEE--T-TT-T-EEEEEEEEEECCSCC
T ss_pred EEEECCcCccccccCCCCcEEEEEEEEE--C-CC-C-EEEEEEEEEEEcCCC
Confidence 36788999999731 1245555554 3 33 3 378999999999997
No 57
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=95.47 E-value=0.47 Score=34.33 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=61.9
Q ss_pred CCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCCCcEEEEcCC----C-CceEEEEEEeeCCCCCCceEEEEE
Q psy5884 16 PGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGE----A-RRQIVKIEATDNDLGVNAEITYSI 90 (195)
Q Consensus 16 ~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~v~e~~----~-g~~v~~v~a~D~D~~~n~~~~y~i 90 (195)
...|.|.++|+|..|. .+....+.|.|.+ ..+|... +..+.+. . +..-....|.|.|. .-.++.|.+
T Consensus 60 ~G~htlta~A~D~aGn-~s~s~~v~vtV~~--~~~Ptv~----itsP~~g~~~~~~~~vtl~~~AsD~~g-~V~~Ve~~~ 131 (190)
T 3pdd_A 60 VGAYNLKAVAVLSDGR-RIESPVTPVLVKV--IVKPTVK----LTAPKSNVVAYGNEFLKITATASDSDG-KISRVDFLV 131 (190)
T ss_dssp SEEEEEEEEEEETTSC-EEECCCEEEEEEC--CCCCEEE----EEECCTTCCCBTTSEEEEEEEEECSSS-CEEEEEEEE
T ss_pred CccEEEEEEEEECCCC-EeeecceeEEecc--CCCCcee----ecCCCCCcEEecCCeEEEEEEEECCCC-cEEEEEEEE
Confidence 5689999999998775 2233346677766 4466431 2222221 1 23445566777653 122344443
Q ss_pred EeeCCCCeecEEEeCCCCEEEEceeCCCCCEEEEEEEEEECCC-CceeEEEEEEEE
Q psy5884 91 YHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGG-KSSQTIVEVSVV 145 (195)
Q Consensus 91 ~~~~~~~~~~F~id~~tG~i~~~~~ld~~~~~~l~v~a~D~~~-~~~~~~v~i~V~ 145 (195)
+.....-+.... -...-.. ....|.|+++|+|..+ .+..+.+.|.|.
T Consensus 132 ------dg~~v~t~t~~~-y~~~~~~-~~G~~tl~a~A~D~aGn~s~s~~vtvtv~ 179 (190)
T 3pdd_A 132 ------DGEVIGSDREAP-YEYEWKA-VEGNHEISVIAYDDDDAASTPDSVKIFVK 179 (190)
T ss_dssp ------TTEEEEEECSSS-EEEEEEC-CSEEEEEEEEEEETTCCBCCCEEEEEEEB
T ss_pred ------CCEEEecccCCC-EEEEEec-CCeeEEEEEEEEECCCCEEecceEEEEEC
Confidence 111222222111 1111111 4568999999999877 445677888887
No 58
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.89 E-value=1.6 Score=28.00 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=50.3
Q ss_pred CCCccCCCCcEEEEcCCCCceEEEEEEeeCCCCCCceEEEEEEeeCCCCeecEEEe-CCCCEEEEceeCCCCCEEEEEEE
Q psy5884 49 NAPRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRID-PRSGVIETTGKLIAGEQYSITVQ 127 (195)
Q Consensus 49 n~P~f~~~~~~~v~e~~~g~~v~~v~a~D~D~~~n~~~~y~i~~~~~~~~~~F~id-~~tG~i~~~~~ld~~~~~~l~v~ 127 (195)
.+|+-.......+.. +..-..|.+.--+. +...++|......+.. ...+. ..+..+... ......|.|++.
T Consensus 5 ~~PvA~ag~d~~v~~---~~~~v~L~gs~S~D-Dg~~lsY~W~~~~Gp~--~~~l~~~~~~~~~~t--~~~~G~y~f~LT 76 (102)
T 2yrl_A 5 SSGQADAGPDKELTL---PVDSTTLDGSKSSD-DQKIISYLWEKTQGPD--GVQLENANSSVATVT--GLQVGTYVFTLT 76 (102)
T ss_dssp CCCSCCCCSCEEEET---TCCEEEEECCTTCS-SSCBCCCCEEEEESCT--TCEEESTTSSEEEEE--SCCSSEEEEEEE
T ss_pred CCCEEEeCCCcEEec---CCeEEEEEeEeccC-CCCeEEEEEEECCCCc--eeEEccCCCccEEEE--CCCCeEEEEEEE
Confidence 466654433334432 22124455442211 2345778776533331 13332 233333332 234678999999
Q ss_pred EEECCCCceeEEEEEEEE
Q psy5884 128 ATDTGGKSSQTIVEVSVV 145 (195)
Q Consensus 128 a~D~~~~~~~~~v~i~V~ 145 (195)
|+|..+.+++.++.|+|.
T Consensus 77 VtD~~G~s~s~~v~VtV~ 94 (102)
T 2yrl_A 77 VKDERNLQSQSSVNVIVK 94 (102)
T ss_dssp EEBTTCCEEEEEEEEEEE
T ss_pred EEeCCCCEEEeEEEEEEc
Confidence 999988999999999998
No 59
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Probab=90.51 E-value=2.2 Score=29.85 Aligned_cols=75 Identities=12% Similarity=0.204 Sum_probs=52.3
Q ss_pred CCCccCCCCcEEEEcC-CC-CceEEEEEEeeCCCCCCceEEEEEEeeCCCCee-cEEEeCCCCEEEEceeCC-CCCEEEE
Q psy5884 49 NAPRLPMIPPIQIQAG-EA-RRQIVKIEATDNDLGVNAEITYSIYHVSNTGLH-KFRIDPRSGVIETTGKLI-AGEQYSI 124 (195)
Q Consensus 49 n~P~f~~~~~~~v~e~-~~-g~~v~~v~a~D~D~~~n~~~~y~i~~~~~~~~~-~F~id~~tG~i~~~~~ld-~~~~~~l 124 (195)
..|-|....++.+... .. |..+++|.-.|... +..+.|.- ... -|.|++ .|.+.+.+.+. ..+.-.|
T Consensus 32 C~pGF~~~~~~~~vp~~l~~g~~lgkV~F~dC~g--~~~~~~~s------sDp~dFkV~~-DGtVya~r~v~L~~~~~~F 102 (159)
T 1op4_A 32 CKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYES------SEPADFKVDE-DGTVYAVRSFPLTAEQAKF 102 (159)
T ss_dssp CCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEEC------CCSSEEEEET-TTEEEEESCCSCSSSCEEE
T ss_pred ccCCcCcceeEEeccccccCCceeceeecccCCC--CCceeEEc------CCCCCeEEeC-CCcEEEecceeecCCCcEE
Confidence 4577866644433322 22 89999998888864 45577764 334 899987 79999999875 4445688
Q ss_pred EEEEEECC
Q psy5884 125 TVQATDTG 132 (195)
Q Consensus 125 ~v~a~D~~ 132 (195)
.|.|.|..
T Consensus 103 ~V~a~D~~ 110 (159)
T 1op4_A 103 LIYAQDKE 110 (159)
T ss_dssp EEEEEETT
T ss_pred EEEEEcCC
Confidence 99999953
No 60
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=89.57 E-value=3.9 Score=33.52 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=47.5
Q ss_pred CceEEEEEE---eeCCCCCCceEEEEEEeeCCCC--eecEEEe-CCCCEEEEceeCC-CCCEEEEEEEEEECC--CCcee
Q psy5884 67 RRQIVKIEA---TDNDLGVNAEITYSIYHVSNTG--LHKFRID-PRSGVIETTGKLI-AGEQYSITVQATDTG--GKSSQ 137 (195)
Q Consensus 67 g~~v~~v~a---~D~D~~~n~~~~y~i~~~~~~~--~~~F~id-~~tG~i~~~~~ld-~~~~~~l~v~a~D~~--~~~~~ 137 (195)
|.. .+|.| +|+| +..++|+...-.+.+ .....|. .....+...-+-. ....|.|.+.|+|.+ +.++.
T Consensus 354 G~t-VtLdAs~SsDPD---GD~LtY~W~q~~g~g~~~~~vtls~~~~~~~sft~P~~~~~~tl~f~LtVTD~~~p~lTs~ 429 (437)
T 2yhg_A 354 GST-VSLDASGSSDPD---GDSLNYSWSHYGEADSYSGSVSISNSSSASANVQIPSNAGGKDIHILLTLRDNGSPNLYAY 429 (437)
T ss_dssp TCE-EEEECTTCBCTT---CCCEEEEEEECTTTSSCCSCCCEETTTSSEEEEECCTTCTTCEEEEEEEEEECSSSCCEEE
T ss_pred CCE-EEEEeeeeeCCC---CCeEEEEEEEeCCCCccccceEeecCCCceEEEEeCCCCCCcEEEEEEEEEeCCCCCccEE
Confidence 444 34544 4777 356999887643321 1245553 4445666665544 456899999999998 56777
Q ss_pred EEEEEEE
Q psy5884 138 TIVEVSV 144 (195)
Q Consensus 138 ~~v~i~V 144 (195)
..+.|+|
T Consensus 430 ~rViVtV 436 (437)
T 2yhg_A 430 RRVVINV 436 (437)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 7888876
No 61
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Probab=88.43 E-value=1.3 Score=28.70 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.8
Q ss_pred CCEEEEEEEEEECCCCceeEEEEEEEE
Q psy5884 119 GEQYSITVQATDTGGKSSQTIVEVSVV 145 (195)
Q Consensus 119 ~~~~~l~v~a~D~~~~~~~~~v~i~V~ 145 (195)
...|.++-.++|..+...+++.+|.|.
T Consensus 58 ~G~Y~VtY~VtDs~Gn~~t~trtVtV~ 84 (103)
T 2kpn_A 58 AGTYVLTYTVTDSKGHEVTAKQTVTVK 84 (103)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred ceEEEEEEEEEcCCCCEEEEEEEEEEe
Confidence 357999999999988888888899988
No 62
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.58 E-value=1.8 Score=27.75 Aligned_cols=31 Identities=13% Similarity=0.327 Sum_probs=25.7
Q ss_pred CCeEEEEEEEEECCCCCeEeeEEEEEEEEecCC
Q psy5884 16 PGKFRFQVIAREKQGTAASVPVSLTVNLNDIND 48 (195)
Q Consensus 16 ~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvND 48 (195)
...|.|++.++|..+ .+++.++.|.|...+.
T Consensus 68 ~G~y~f~LTVtD~~G--~s~s~~v~VtV~~~~~ 98 (102)
T 2yrl_A 68 VGTYVFTLTVKDERN--LQSQSSVNVIVKEESG 98 (102)
T ss_dssp SSEEEEEEEEEBTTC--CEEEEEEEEEEECCSS
T ss_pred CeEEEEEEEEEeCCC--CEEEeEEEEEEcCCCC
Confidence 568999999999976 5778889999987654
No 63
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A
Probab=79.32 E-value=20 Score=27.70 Aligned_cols=125 Identities=11% Similarity=0.139 Sum_probs=57.1
Q ss_pred CCCCCccCCCC-cEEEEcCCCCceEEEEEEeeCCCCCCceEEEEEEeeCCCCe-------ecEEEeCCC--CEEEEceeC
Q psy5884 47 NDNAPRLPMIP-PIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGL-------HKFRIDPRS--GVIETTGKL 116 (195)
Q Consensus 47 NDn~P~f~~~~-~~~v~e~~~g~~v~~v~a~D~D~~~n~~~~y~i~~~~~~~~-------~~F~id~~t--G~i~~~~~l 116 (195)
+|+++.|.-.. .+.+.|+. |..-..|.-. .+......+.|....+..... +...+.+.. ..+.+ ..+
T Consensus 6 dd~~g~i~F~~~~y~V~E~~-g~v~vtV~R~-g~~~~~vtV~y~T~~GTA~ag~Dy~~~~gtl~F~~Get~kti~V-~I~ 82 (298)
T 3rb5_A 6 ADDPIRMYFEPGHYTVMENC-GEFEVRVVRR-GDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRI-EVI 82 (298)
T ss_dssp -----CEEESSSEEEEETTS-CCEECCEEEC-SCCSSCEEEEEEEEESSSCBTTTBCCCEEEEEECTTCCEECCEE-CBC
T ss_pred CCCceEEEEeCCEEEEecCc-eEEEEEEEEE-CCCCccEEEEEEeeCCccCCCCCccccceEEEECCCceEEEEEE-EEe
Confidence 35555554443 46778864 4444444333 233334558887765433221 112222211 11111 112
Q ss_pred C---CCCEEEEEEEEEEC--CC-CceeEEEEEEEEcCCCCCCCeEecCeeEEEEecCCCCCeEEEEEE
Q psy5884 117 I---AGEQYSITVQATDT--GG-KSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATIT 178 (195)
Q Consensus 117 d---~~~~~~l~v~a~D~--~~-~~~~~~v~i~V~~d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~ 178 (195)
+ .|..-.|.|..++. +. .....+.+|+|. | +|.+|.|.-..-...+.|+. |.....|.
T Consensus 83 dD~~~E~dEtF~v~Ls~p~~~a~lg~~~~atvtI~-d-dD~~g~~~f~~~~~~V~E~~--g~~~~~V~ 146 (298)
T 3rb5_A 83 DDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMIL-D-DDHAGIFAFTDSVFEITESV--GRFELKVM 146 (298)
T ss_dssp CCSSCCCCEEEEEEEECCCTTCCBCSCSEEEEEEE-C-CCCCCEEECSCSEEEECTTC--CCEEEEEE
T ss_pred CCCCccCcEEEEEEEeCCCCCcEECCCceEEEEEe-c-cccccccccccccEEeecCC--ceEEEEEE
Confidence 2 34333444445442 22 233345566667 3 57789886655567788875 44444443
No 64
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Probab=76.04 E-value=9.9 Score=23.15 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=26.1
Q ss_pred eeCCCCCEEEEEEEEEECCCCceeEEEEEEEE
Q psy5884 114 GKLIAGEQYSITVQATDTGGKSSQTIVEVSVV 145 (195)
Q Consensus 114 ~~ld~~~~~~l~v~a~D~~~~~~~~~v~i~V~ 145 (195)
..+.....|.+.+.++|..+.+.+.++.|.|.
T Consensus 53 hty~~~G~Y~v~LtVtd~~G~~~t~~~~V~V~ 84 (85)
T 2y72_A 53 HAYKKAGTYNVTLKVTDDKGATATESFTIEIK 84 (85)
T ss_dssp EECSSCEEEEEEEEEEETTSCEEEEEEEEEEE
T ss_pred EEcCCCeEEEEEEEEEECCCCEEEEEEEEEEc
Confidence 34455678999999999888888888888875
No 65
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Probab=75.34 E-value=8.3 Score=23.50 Aligned_cols=27 Identities=19% Similarity=0.493 Sum_probs=20.3
Q ss_pred CCeEEEEEEEEECCCCCeEeeEEEEEEEE
Q psy5884 16 PGKFRFQVIAREKQGTAASVPVSLTVNLN 44 (195)
Q Consensus 16 ~~~~~l~v~a~D~~~~~~~~~~~v~I~V~ 44 (195)
...|.+.+.++|..+ .+.+.++.|.|.
T Consensus 58 ~G~Y~v~LtVtd~~G--~~~t~~~~V~V~ 84 (85)
T 2y72_A 58 AGTYNVTLKVTDDKG--ATATESFTIEIK 84 (85)
T ss_dssp CEEEEEEEEEEETTS--CEEEEEEEEEEE
T ss_pred CeEEEEEEEEEECCC--CEEEEEEEEEEc
Confidence 568999999999876 455666666664
No 66
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Probab=72.62 E-value=13 Score=23.83 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=31.8
Q ss_pred CCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCc
Q psy5884 6 KENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPR 52 (195)
Q Consensus 6 ~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~ 52 (195)
...+|--+ ...|.+.-.++|..|. .++++.+|.|.+..+..|.
T Consensus 50 ~g~Vdt~k--~G~Y~VtY~VtDs~Gn--~~t~trtVtV~~~~e~~~~ 92 (103)
T 2kpn_A 50 DGEVDTTK--AGTYVLTYTVTDSKGH--EVTAKQTVTVKVREEVKND 92 (103)
T ss_dssp ESCCCSSS--CEEEEEEEEEECTTSC--EEEEEEEEEEECSSCCCCC
T ss_pred eCcccCCC--ceEEEEEEEEEcCCCC--EEEEEEEEEEeCCCcccCC
Confidence 35677776 7799999999998774 5567788888876655443
No 67
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=69.19 E-value=19 Score=22.80 Aligned_cols=68 Identities=18% Similarity=0.093 Sum_probs=38.6
Q ss_pred ceEEEEEEeeCCCCCCceEEEEEEeeCCCCeecEEEeCCCC-EEEEceeCCCCCEEEEEEEEEECCCC-ceeEEEEEEEE
Q psy5884 68 RQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSG-VIETTGKLIAGEQYSITVQATDTGGK-SSQTIVEVSVV 145 (195)
Q Consensus 68 ~~v~~v~a~D~D~~~n~~~~y~i~~~~~~~~~~F~id~~tG-~i~~~~~ld~~~~~~l~v~a~D~~~~-~~~~~v~i~V~ 145 (195)
.......|.|.|. .-.++.|.+. ......+...- ....... ...|.|.++|+|..+. ..++.+.|+|.
T Consensus 18 ~v~i~a~A~D~dg-~V~kVef~vd------g~~vg~dt~apy~~~w~~~---~G~htl~a~AtD~~G~~~tS~~v~vtV~ 87 (98)
T 3pe9_A 18 FLKITATASDSDG-KISRVDFLVD------GEVIGSDREAPYEYEWKAV---EGNHEISVIAYDDDDAASTPDSVKIFVK 87 (98)
T ss_dssp EEEEEEEECCSSS-CEEEEEEEET------TEEEEEECSSSEEEEEECC---SEEEEEEEEEEETTCCBCCCEEEEEEEE
T ss_pred EEEEEEEEEeCCC-CEEEEEEEEC------CEEecccccCCEEEEEEcC---CccEEEEEEEEECCCCEEeeeEEEEEEC
Confidence 3455667777664 2345666651 12222222111 1111111 4679999999998775 44678889887
No 68
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A
Probab=55.22 E-value=69 Score=24.59 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=37.6
Q ss_pred CCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCCC-cEEEEcCCCCceEEEEEEeeCCCCCCceEEEEEEe
Q psy5884 16 PGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIP-PIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYH 92 (195)
Q Consensus 16 ~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~-~~~v~e~~~g~~v~~v~a~D~D~~~n~~~~y~i~~ 92 (195)
...|.+.+..-. ++..+......+|+|.| ||.+|.|.-.. .+.+.|+. |.....|.-...-. ..-.+.|....
T Consensus 90 dEtF~v~Ls~p~-~~a~lg~~~~atvtI~d-dD~~g~~~f~~~~~~V~E~~-g~~~~~V~Rs~~~~-g~vtV~~~T~d 163 (298)
T 3rb5_A 90 DECFYIRLFNPS-EGVKLAVPMIATVMILD-DDHAGIFAFTDSVFEITESV-GRFELKVMRYSGAR-GTVIVPYWTEN 163 (298)
T ss_dssp CEEEEEEEECCC-TTCCBCSCSEEEEEEEC-CCCCCEEECSCSEEEECTTC-CCEEEEEEEESCCC-SCEEEEEEEEE
T ss_pred cEEEEEEEeCCC-CCcEECCCceEEEEEec-cccccccccccccEEeecCC-ceEEEEEEEEecCC-CCEEEEEEecC
Confidence 445555444321 22233334456666676 57788765543 46777764 55555554433222 23346776654
No 69
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=54.54 E-value=46 Score=22.33 Aligned_cols=81 Identities=23% Similarity=0.275 Sum_probs=44.8
Q ss_pred CCccCCCCcEEEEcCCCCceEEEEEEeeCCCCCCceEEEEEEee--CCCCeecEEEeCCCCEEEEce-eCCCCCEEEEEE
Q psy5884 50 APRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHV--SNTGLHKFRIDPRSGVIETTG-KLIAGEQYSITV 126 (195)
Q Consensus 50 ~P~f~~~~~~~v~e~~~g~~v~~v~a~D~D~~~n~~~~y~i~~~--~~~~~~~F~id~~tG~i~~~~-~ld~~~~~~l~v 126 (195)
.|..+......+.--..|.+-..++|- -..+++.+.|-+-.. ..........|..+|.|-+.. .|..+..=.+++
T Consensus 36 ~P~IpLksel~vEiLEkG~VRfWlQae--klS~~a~~~~ifNdkei~~~~~~ki~fD~~tGiIEmime~~~~edeGTyT~ 113 (142)
T 2jtd_A 36 FPTVPTKSELAVEILEKGQVRFWMQAE--KLSSNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTF 113 (142)
T ss_dssp CSSCSSSCEEEEEEETTTEEEEEEECS--CCTTCCEEEEEETTEECCSSSSCCEEECSSSCCEEEEECCCCTTTCCEEEE
T ss_pred CCcccchhhhhHHHHhcCcEEEEEEhh--hcCCCceEEEEeccceeccCCCeeEeecccCChhhhhHhhcccccCceEEE
Confidence 455554443333333348887778774 345677777765321 112334566688999986654 444333334455
Q ss_pred EEEECC
Q psy5884 127 QATDTG 132 (195)
Q Consensus 127 ~a~D~~ 132 (195)
+..|+.
T Consensus 114 QlqDGK 119 (142)
T 2jtd_A 114 QIQDGK 119 (142)
T ss_dssp EEEETT
T ss_pred EEecCc
Confidence 567854
No 70
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=52.83 E-value=27 Score=22.04 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=19.9
Q ss_pred CCeEEEEEEEEECCCCCeEeeEEEEEEEE
Q psy5884 16 PGKFRFQVIAREKQGTAASVPVSLTVNLN 44 (195)
Q Consensus 16 ~~~~~l~v~a~D~~~~~~~~~~~v~I~V~ 44 (195)
...|+|.++|+|..|. ......|.|.|.
T Consensus 60 ~G~htl~a~AtD~~G~-~~tS~~v~vtV~ 87 (98)
T 3pe9_A 60 EGNHEISVIAYDDDDA-ASTPDSVKIFVK 87 (98)
T ss_dssp SEEEEEEEEEEETTCC-BCCCEEEEEEEE
T ss_pred CccEEEEEEEEECCCC-EEeeeEEEEEEC
Confidence 4579999999999875 233456666665
No 71
>3us9_A Sodium/calcium exchanger 1; beta-sandwich, calcium binding protein, intracellular, metal protein; 2.68A {Canis lupus familiaris} PDB: 2klt_A
Probab=52.47 E-value=77 Score=24.31 Aligned_cols=117 Identities=13% Similarity=0.097 Sum_probs=57.5
Q ss_pred CCcEEEEcCCCCceEEEEEEeeCCCCCCceEEEEEEeeCCCCeec-------EEEeCC-C-CEEEEceeCC---CCCEEE
Q psy5884 56 IPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHK-------FRIDPR-S-GVIETTGKLI---AGEQYS 123 (195)
Q Consensus 56 ~~~~~v~e~~~g~~v~~v~a~D~D~~~n~~~~y~i~~~~~~~~~~-------F~id~~-t-G~i~~~~~ld---~~~~~~ 123 (195)
...+.+.|+. |..-..|.-...+......+.|....+......- ..+.+. + ..+.+ .-++ +|..=.
T Consensus 16 ~~~y~V~E~~-G~v~vtV~R~gG~~~~~v~V~y~T~dGTA~~g~Dy~~~~gtl~F~~Get~kti~V-~IidD~~~E~~Et 93 (295)
T 3us9_A 16 QGTYQCLENC-GTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGETQKEIRV-GIIDDDIFEEDKN 93 (295)
T ss_dssp CSEEEEEGGG-SCEEEEEEEEESSCCSCEEEEEEEEESSSCBTTTBCCCCEEEEECSSCCEEEEEE-CCCCCSSCCCCEE
T ss_pred CCeEEEecCc-eEEEEEEEEecCCCCceEEEEEEeeCCcccCCcCccccceEEEECCCceEEEEEE-EEeCCCcccCceE
Confidence 3446777764 5555666655544444556888877643322111 222221 1 11211 2222 344334
Q ss_pred EEEEEEECC--------------------CCceeEEEEEEEEcCCCCCCCeEecCeeEEEEecCCCCCeEEEEEE
Q psy5884 124 ITVQATDTG--------------------GKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATIT 178 (195)
Q Consensus 124 l~v~a~D~~--------------------~~~~~~~v~i~V~~d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~ 178 (195)
|.|..++.. .+....+.+|+|. | ||.+|.|.-..-...+.|+. |....+|.
T Consensus 94 F~v~Ls~~~~~~~~~~d~~~~~~~~~~~a~Lg~~~~atVtI~-D-dD~agv~sf~~~~~~V~E~~--G~~~v~V~ 164 (295)
T 3us9_A 94 FLVHLSNVKVSSEASEDGILEANHVSALACLGSPSTATVTIF-D-DDHAGIFTFEEPVTHVSESI--GIMEVKVL 164 (295)
T ss_dssp EEEEEECCCCCCCC-------------CCCCCSCCEEEEEEE-C-CCCCCEEEESCSEEEEESCS--SEEEEEEE
T ss_pred EEEEEecCccccccccccccccccCCcccccCCCceeEEEEc-c-cccccccccCCCeEEEecCC--CeEEEEEE
Confidence 444444421 1222245666677 3 57888876555456788874 44444443
No 72
>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain 1, antiport, calcium transport, calmodulin-binding, cell membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A* 2fws_A
Probab=51.25 E-value=58 Score=22.51 Aligned_cols=56 Identities=11% Similarity=0.038 Sum_probs=25.0
Q ss_pred EEEEEEEEecCCCCCccCCC-CcEEEEcCCCCceEEEEEEeeCCCCCCceEEEEEEeeC
Q psy5884 37 VSLTVNLNDINDNAPRLPMI-PPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVS 94 (195)
Q Consensus 37 ~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~g~~v~~v~a~D~D~~~n~~~~y~i~~~~ 94 (195)
+.+.+.|.|- |..+.|.-. ..+.+.|+. |..-..|.-...+.+....+.|....++
T Consensus 10 ~~~~~~i~dd-d~~g~i~F~~~~y~V~E~~-G~v~vtV~R~~G~~~~~v~V~y~T~dGT 66 (160)
T 3gin_A 10 AALEVLFQGP-GPVSKIFFEQGTYQCLENC-GTVALTIIRRGGDLTNTVFVDFRTEDGT 66 (160)
T ss_dssp ------------CEEEEEESCSEEEEETTS-SEEEEEEEEESSCTTSCEEEEEEEEESS
T ss_pred ceEEEEEecC-CCccEEEEeCCEEEEEcCc-EEEEEEEEEccCCCCcEEEEEEEEECCc
Confidence 4556666763 345554433 346777864 5554455444445434456889887644
No 73
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Probab=47.56 E-value=54 Score=21.16 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=29.6
Q ss_pred eEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCCCEEEEEEEEEECCCCce
Q psy5884 85 EITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSS 136 (195)
Q Consensus 85 ~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~~~~~l~v~a~D~~~~~~ 136 (195)
...|.|.........+..+......-.+...|.....|.|.|.|.+..+.+.
T Consensus 51 I~~Y~ve~~~~~~~~~~~v~~~~~t~~~v~gL~p~t~Y~frV~A~n~~G~s~ 102 (120)
T 1wfu_A 51 WLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYE 102 (120)
T ss_dssp CCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCEEEEEEEEECSSSCEE
T ss_pred eEEEEEEEecCCCCceEEEecCCccEEEECCCCCCCEEEEEEEEECCCCCCC
Confidence 3577776432222223333221122244556667788999999999877543
No 74
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A 1z2k_A
Probab=40.34 E-value=59 Score=21.13 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=32.4
Q ss_pred CeecEEEeCCCCEEEEcee-CCCCCEEEEEEEEEECCCCceeEEEEEEEE
Q psy5884 97 GLHKFRIDPRSGVIETTGK-LIAGEQYSITVQATDTGGKSSQTIVEVSVV 145 (195)
Q Consensus 97 ~~~~F~id~~tG~i~~~~~-ld~~~~~~l~v~a~D~~~~~~~~~v~i~V~ 145 (195)
-.+.|.++.++|.|.+... +.....|.|.| .+..+......+.+.|.
T Consensus 64 fk~r~~fd~~n~AL~I~~vQ~eDSg~Y~LeV--t~~tG~v~~~~fql~Vf 111 (112)
T 2ptt_B 64 FSDIYGFDYGDFALSIKSAKLQDSGHYLLEI--TNTGGKVCNKNFQLLIL 111 (112)
T ss_dssp GGGTEEECTTTCCEEESSCCGGGCEEEEEEE--ECTTCBEEEEEEEEEEC
T ss_pred eCCEEEEecCCcEEEEEecCcccCceEEEEE--ecCCCcEEEEEEEEEee
Confidence 3567899999999877654 33456788876 55556666667777664
No 75
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane, transmembrane, membrane; 2.25A {Drosophila melanogaster} SCOP: b.1.27.0
Probab=32.24 E-value=1.1e+02 Score=20.24 Aligned_cols=104 Identities=10% Similarity=0.108 Sum_probs=36.6
Q ss_pred cEEEEcCCCCceEEEEEEeeCCCCCCceEEEEEEeeCCCCe-------ecEEEeCCC--CEEEEceeCC---CCCEEEEE
Q psy5884 58 PIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGL-------HKFRIDPRS--GVIETTGKLI---AGEQYSIT 125 (195)
Q Consensus 58 ~~~v~e~~~g~~v~~v~a~D~D~~~n~~~~y~i~~~~~~~~-------~~F~id~~t--G~i~~~~~ld---~~~~~~l~ 125 (195)
.+.+.|+. |.....|.-. .+......+.|....+..... +...+.+.. ..|.+ .-++ .|..-.|.
T Consensus 13 ~y~V~E~~-g~~~v~V~R~-g~~~~~v~V~y~t~~gTA~~g~Dy~~~~g~l~F~~Get~k~i~V-~I~dD~~~E~~E~F~ 89 (137)
T 3ead_A 13 HYTVMENC-GEFEVRVVRR-GDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRI-EVIDDDVFEEDECFY 89 (137)
T ss_dssp EEEEEGGG-CEEEEEEEEE-SCCSSCEEEEEEEECSSSCBTTTBCCCEEEEEECTTCCEEEEEE-EBCCCSSCCCCEEEE
T ss_pred EEEEECCC-eEEEEEEEEE-CCCCceEEEEEEeECCCcCCCCcEeEeeEEEEECCCceEEEEEE-EEecCCcccCcEEEE
Confidence 46777753 4444444333 233334567887765432211 222222211 11222 2222 34444455
Q ss_pred EEEEEC--CC---CceeEEEEEEEEcCCCCCCCeEecCeeEEEEecCC
Q psy5884 126 VQATDT--GG---KSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGA 168 (195)
Q Consensus 126 v~a~D~--~~---~~~~~~v~i~V~~d~nd~~P~f~~~~~~~~v~E~~ 168 (195)
|...+. +. ....+++ +|. | +|.+|.|.-..-...+.|+.
T Consensus 90 v~L~~p~~~a~lg~~~~atv--tI~-d-dD~~g~~~f~~~~~~V~E~~ 133 (137)
T 3ead_A 90 IRLFNPSEGVKLAVPMIATV--MIL-D-DDHAGIFAFTDSVFEITESV 133 (137)
T ss_dssp EEEECCCTTCEECSCSEEEE--EEE-C-CC------------------
T ss_pred EEEECCCCCcEECCCcEEEE--EEE-C-CCCCCEEEECCCcEEEeccc
Confidence 555553 22 2234444 446 3 46788765544455677764
No 76
>2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD domain, CBM44, carbohydrate BI module, beta-sandwich proteins, cellulosome; 2.0A {Clostridium thermocellum} PDB: 2c26_A
Probab=31.64 E-value=1e+02 Score=23.17 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=25.3
Q ss_pred eCCCCCEEEEEEEEEECCCCceeEEEEEEEE
Q psy5884 115 KLIAGEQYSITVQATDTGGKSSQTIVEVSVV 145 (195)
Q Consensus 115 ~ld~~~~~~l~v~a~D~~~~~~~~~v~i~V~ 145 (195)
.+.....|.+++.|+|..+.+.+.+..|.|.
T Consensus 64 tY~~~GtYtVtLTVtD~~G~s~t~t~~ItV~ 94 (260)
T 2c4x_A 64 KYKNPGTYKVKLIVTDNQGASSSFTATIKVT 94 (260)
T ss_dssp CCSSCEEEEEEEEEEETTSCEEEEEEEEEEB
T ss_pred EeCCCEEEEEEEEEEeCCCCeEEEEEEEEEC
Confidence 3445568999999999888777888888887
No 77
>2e7m_A Protein KIAA0319; PKD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.31 E-value=28 Score=22.76 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=21.9
Q ss_pred CCCEEEEEEEEEECCCCceeEEEEEEEE
Q psy5884 118 AGEQYSITVQATDTGGKSSQTIVEVSVV 145 (195)
Q Consensus 118 ~~~~~~l~v~a~D~~~~~~~~~v~i~V~ 145 (195)
.+..|.|.|.++|..+ .....+.|+|.
T Consensus 78 ~eG~Y~FqltVtd~~~-~ge~~vnVTV~ 104 (113)
T 2e7m_A 78 SVGLYVFKVTVSSENA-FGEGFVNVTVK 104 (113)
T ss_dssp CSEEEEECCEEEETTE-EEECCEEEEEE
T ss_pred CcEEEEEEEEEECCCC-CccceEEEEEc
Confidence 3678999999999876 56677788887
No 78
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.39 E-value=76 Score=20.25 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=21.3
Q ss_pred EceeCCCCCEEEEEEEEEECCCCceeEEEE
Q psy5884 112 TTGKLIAGEQYSITVQATDTGGKSSQTIVE 141 (195)
Q Consensus 112 ~~~~ld~~~~~~l~v~a~D~~~~~~~~~v~ 141 (195)
+...|.....|.|.|.|.+..+.+....+.
T Consensus 83 ~v~gL~p~t~Y~frV~A~N~~G~~~S~~v~ 112 (127)
T 2dmk_A 83 TVHGLQSGTRYIFIVKAINQAGSRNSEPTR 112 (127)
T ss_dssp EEESCCSSCEEEEEEEEEESSCEEECCCEE
T ss_pred EECCCCCCCEEEEEEEEEeCCCCCCCcCeE
Confidence 445677778999999999987763333333
No 79
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=27.09 E-value=2.9e+02 Score=23.54 Aligned_cols=70 Identities=9% Similarity=0.210 Sum_probs=37.8
Q ss_pred EEEEEeeCCCCCCceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCCCEEEEEEEEEECCCC--ceeEEEEEEEE
Q psy5884 71 VKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGK--SSQTIVEVSVV 145 (195)
Q Consensus 71 ~~v~a~D~D~~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~~~~~l~v~a~D~~~~--~~~~~v~i~V~ 145 (195)
..+.|.+--.+.+-+..|.|. |-......+......+.... .....|.|.|+|.+..+. ...+++.|+|.
T Consensus 676 i~f~~l~y~~~~~~~y~Y~L~---G~d~~W~~~~~~~~~~~ytn--L~pG~Y~f~V~a~~~~g~w~~~~~~l~I~I~ 747 (758)
T 3ott_A 676 FELSDLPYSLDEKNKFVYRLE---GMDKEWNFLKSNINRITYSN--LSYGNYQLIISKLERDGQPSNRPHILNIRIL 747 (758)
T ss_dssp EEEECCCTTCSSCCCEEEEEE---TTCSSCEECCTTCCEEEECS--CCSEEEEEEEEEBCTTSCBCSSCEEEEEEEC
T ss_pred EEEEcccCCCCccCeEEEEec---CCCCCccCCCCCcceEEecC--CCCccEEEEEEEeCCCCCccCccEEEEEEEC
Confidence 344454444444555777774 22223333322222232211 234679999999997653 44677888876
No 80
>2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD domain, CBM44, carbohydrate BI module, beta-sandwich proteins, cellulosome; 2.0A {Clostridium thermocellum} PDB: 2c26_A
Probab=24.76 E-value=1.2e+02 Score=22.73 Aligned_cols=29 Identities=24% Similarity=0.612 Sum_probs=22.2
Q ss_pred CCeEEEEEEEEECCCCCeEeeEEEEEEEEec
Q psy5884 16 PGKFRFQVIAREKQGTAASVPVSLTVNLNDI 46 (195)
Q Consensus 16 ~~~~~l~v~a~D~~~~~~~~~~~v~I~V~Dv 46 (195)
...|.+.+.++|..+. +.+.+..|.|...
T Consensus 68 ~GtYtVtLTVtD~~G~--s~t~t~~ItV~~~ 96 (260)
T 2c4x_A 68 PGTYKVKLIVTDNQGA--SSSFTATIKVTSA 96 (260)
T ss_dssp CEEEEEEEEEEETTSC--EEEEEEEEEEBCS
T ss_pred CEEEEEEEEEEeCCCC--eEEEEEEEEECCC
Confidence 6689999999998763 4566777777654
No 81
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}
Probab=23.31 E-value=1.2e+02 Score=18.19 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=21.0
Q ss_pred EceeCCCCCEEEEEEEEEECCCCceeEEEEE
Q psy5884 112 TTGKLIAGEQYSITVQATDTGGKSSQTIVEV 142 (195)
Q Consensus 112 ~~~~ld~~~~~~l~v~a~D~~~~~~~~~v~i 142 (195)
+...|.....|.|.|.|.+..+.+.......
T Consensus 58 ~i~~L~p~t~Y~~~V~A~n~~g~s~p~~~~~ 88 (100)
T 3b83_A 58 TLTNLEPNTTYEIRIVARNGQQYSPPVSTTF 88 (100)
T ss_dssp EECSCCTTCEEEEEEEEEETTEECCCEEEEE
T ss_pred EECCCCCCCEEEEEEEEEeCCCCCCCEEEEE
Confidence 3345666678999999999876544444333
No 82
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1
Probab=22.46 E-value=79 Score=18.42 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=16.5
Q ss_pred ceeCCCCCEEEEEEEEEECCCC
Q psy5884 113 TGKLIAGEQYSITVQATDTGGK 134 (195)
Q Consensus 113 ~~~ld~~~~~~l~v~a~D~~~~ 134 (195)
...|.....|.+.|.|.|..+.
T Consensus 55 ~~~L~~~t~Y~~~V~A~n~~G~ 76 (88)
T 1k85_A 55 ISGLAADTSYTFTVKAKDAAGN 76 (88)
T ss_dssp ECCCCSSCEEEEEEEEEETTTE
T ss_pred eCCCCCCCEEEEEEEEEeCCCC
Confidence 3455556789999999997653
No 83
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.45 E-value=1e+02 Score=18.75 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=21.1
Q ss_pred EceeCCCCCEEEEEEEEEECCCCceeEEEE
Q psy5884 112 TTGKLIAGEQYSITVQATDTGGKSSQTIVE 141 (195)
Q Consensus 112 ~~~~ld~~~~~~l~v~a~D~~~~~~~~~v~ 141 (195)
+...|.....|.|.|.|.+..+.+....+.
T Consensus 64 ~l~~L~p~t~Y~~~V~A~~~~~~s~p~~~~ 93 (104)
T 2dkm_A 64 LLDGLEPGRDYEVSVQSLRGPEGSEARGIR 93 (104)
T ss_dssp EEESCCTTCCEEEEEEEECSSSBCCCEEEE
T ss_pred EECCCCCCCEEEEEEEEECCCCCCCCEEEE
Confidence 445566667899999999876655555444
No 84
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=22.11 E-value=1.3e+02 Score=17.62 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=20.2
Q ss_pred ceeCCCCCEEEEEEEEEECCCCceeEEEE
Q psy5884 113 TGKLIAGEQYSITVQATDTGGKSSQTIVE 141 (195)
Q Consensus 113 ~~~ld~~~~~~l~v~a~D~~~~~~~~~v~ 141 (195)
...|.....|.|.|.|.+.++.+......
T Consensus 59 l~~L~p~t~Y~~~V~A~~~~g~s~p~~~~ 87 (94)
T 1j8k_A 59 LQGLRPGSEYTVSVVALHDDMESQPLIGT 87 (94)
T ss_dssp ECSCCCCSEEEEEEEECSSSCCCCCEEEE
T ss_pred eCCCCCCCEEEEEEEEEcCCCcCCCEEeE
Confidence 34556667899999999877765544443
Done!