RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5884
(195 letters)
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 102 bits (257), Expect = 9e-27
Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 24/193 (12%)
Query: 3 VVSKENLDRDPPNPGKFR----FQVIAREKQGTAASVPVSLTVNLNDINDNAPR-----L 53
V K+ D + P K G + + + + D+ND P L
Sbjct: 52 VRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPL 111
Query: 54 PMIPPIQ--IQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIE 111
PM +Q + ++A D D N I Y I V + +F +D RSGV+
Sbjct: 112 PMQAVVQLNAPPNT---PVFTLQARDPDTDHN--IHYFI--VRDRTGGRFEVDERSGVVR 164
Query: 112 TTGKL--IAGEQYSITVQATDTGG----KSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVS 165
T G +Y + V+A D G + Q+ E + R+P F +Y+ +
Sbjct: 165 TRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIP 224
Query: 166 EGASINSTVATIT 178
E +S + +I
Sbjct: 225 ENQKKDSDIISIK 237
Score = 69.7 bits (171), Expect = 1e-14
Identities = 20/135 (14%), Positives = 37/135 (27%), Gaps = 23/135 (17%)
Query: 66 ARRQIVKIEATDNDLGVNAEITYSIYHVSNTGL------HKFRIDPRSGVIETTGKL--- 116
A R +IE T+ D + + + ++ + + +G + K
Sbjct: 2 AVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYE 61
Query: 117 -----IAGEQYSITVQATDTG--GKSSQTIVEVSV--VPGPNTRSPVFQQN--TYDVNVS 165
+ + I + V + V V N P F V
Sbjct: 62 ELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDV---NDEPPYFINRPLPMQAVVQ 118
Query: 166 EGASINSTVATITVS 180
A N+ V T+
Sbjct: 119 LNAPPNTPVFTLQAR 133
Score = 66.6 bits (163), Expect = 1e-13
Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 19/157 (12%)
Query: 1 YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLN---DINDNAPRLPMIP 57
+V ++ ++ V A ++ G T AP+ M P
Sbjct: 161 GVVRTRGTDLFQ--LDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYM-P 217
Query: 58 PIQIQAGEARR---QIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTG 114
+ + E ++ I+ I+A + EI Y++ G F I P SG+++
Sbjct: 218 SYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQ-GAGTFNIGPTSGIVKLAK 273
Query: 115 KL-----IAGEQYSITVQATDTGGK-SSQTIVEVSVV 145
+L YS+ V AT+ G S+ + + V
Sbjct: 274 ELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVT 310
Score = 32.4 bits (74), Expect = 0.079
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 3 VVSKENLDR-DPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNA 50
V + LD D P + V A E S V LT+ + D+NDNA
Sbjct: 269 VKLAKELDFEDLRQPHVYSLIVTATE-DSGGFSTSVDLTIRVTDVNDNA 316
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 100 bits (250), Expect = 3e-25
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 16/160 (10%)
Query: 37 VSLTVNLNDINDNAPRLPMIPPIQIQAG-----EARRQIVKIEATDNDLGVNAEITYSIY 91
+ + + D+ND P P+ +QA + ++A D D N I Y I
Sbjct: 95 QRVIILVKDVNDEPPYFIN-RPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFI- 150
Query: 92 HVSNTGLHKFRIDPRSGVIETTGKLI--AGEQYSITVQATDTGG----KSSQTIVEVSVV 145
V + +F +D RSGV+ T G + +Y + V+A D G + Q+ E +
Sbjct: 151 -VRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLS 209
Query: 146 PGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASG 185
R+P F +Y+ + E +S + +I A
Sbjct: 210 IVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADR 249
Score = 73.9 bits (182), Expect = 7e-16
Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 29/195 (14%)
Query: 3 VVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLN---DINDNAPRLPMIP-- 57
V ++ ++ V A ++ G T AP+ M
Sbjct: 168 VRTRGTDLFQLDM--EYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYE 225
Query: 58 -PIQ--IQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTG 114
I + I+ I+A + EI Y++ G F I P SG+++
Sbjct: 226 AEIPENQKKDSD---IISIKAKSFA---DREIRYTL-KAQGQGAGTFNIGPTSGIVKLAK 278
Query: 115 KL-----IAGEQYSITVQATD-TGGKSSQTIVEVSV--VPGPNTRSPVFQQNTYDV-NVS 165
+L YS+ V AT+ +GG S+ + + V V N +P F+ Y NV
Sbjct: 279 ELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDV---NDNAPKFELPDYQAHNVD 335
Query: 166 EGASINSTVATITVS 180
E + +++ +
Sbjct: 336 EDIPLGTSILRVKAM 350
Score = 68.1 bits (167), Expect = 5e-14
Identities = 44/154 (28%), Positives = 64/154 (41%), Gaps = 18/154 (11%)
Query: 1 YLVVSKENLDR-DPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPI 59
+ ++KE LD D P + V A E S V LT+ + D+NDNAP+ +
Sbjct: 273 IVKLAKE-LDFEDLRQPHVYSLIVTATE-DSGGFSTSVDLTIRVTDVNDNAPKFELPDYQ 330
Query: 60 QIQAGE---ARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKL 116
E I++++A D+D G NAEI Y + + F +D +G+I +L
Sbjct: 331 AHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLV--SDDH----FAVDS-NGIIVNNKQL 383
Query: 117 ---IAGEQYSITVQATDTGG--KSSQTIVEVSVV 145
Y V A D G KS V V
Sbjct: 384 DADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTK 417
Score = 61.2 bits (149), Expect = 2e-11
Identities = 21/134 (15%), Positives = 38/134 (28%), Gaps = 23/134 (17%)
Query: 65 EARRQIVKIEATDNDLGVNAEITYSIYHVSNTGL------HKFRIDPRSGVI-------- 110
A R +IE T+ D + + + ++ + + +G +
Sbjct: 6 RAVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDY 65
Query: 111 ETTGKLIAGEQYSITVQATDTG--GKSSQTIVEVSV--VPGPNTRSPVFQQN--TYDVNV 164
E G + + I + V + V V N P F V
Sbjct: 66 EELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDV---NDEPPYFINRPLPMQAVV 122
Query: 165 SEGASINSTVATIT 178
A N+ V T+
Sbjct: 123 QLNAPPNTPVFTLQ 136
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 99.0 bits (247), Expect = 1e-24
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 21/194 (10%)
Query: 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQI 61
L V+K LDR+ +F + A + G P+ + +N+ D+NDN P
Sbjct: 60 LSVTKP-LDRE--LIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLH-QVWNG 115
Query: 62 QAGEARRQ---IVKIEATDND--LGVNAEITYSIY--HVSNTGLHKFRIDPRSGVIETTG 114
E + ++ + A D D +N + Y I S + F I+ +G I T
Sbjct: 116 SVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVA 175
Query: 115 KLI---AGEQYSITVQATDTGGK-----SSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSE 166
+ +QY++ +QATD G S+ ++V N P F T+ V E
Sbjct: 176 AGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVT-DVNDNPPEFTAMTFYGEVPE 234
Query: 167 GASINSTVATITVS 180
++ VA +TV+
Sbjct: 235 NR-VDVIVANLTVT 247
Score = 85.1 bits (211), Expect = 9e-20
Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 11/166 (6%)
Query: 3 VVSKENLDR--DPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQ 60
+ + LDR + +A + S +L + L DINDNAP++ +P
Sbjct: 394 ITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQV--LPQEA 451
Query: 61 IQAGEARRQIVKIEATDNDLGVNA-EITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAG 119
+ I A D D+ NA + + T + I+ +G I
Sbjct: 452 ETCETPEPNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKF 511
Query: 120 E---QYSITVQATDTGG--KSSQTIVEVSVVPGPNTRSPVFQQNTY 160
Y + + TD+G KS+ +I+ V V ++ + +
Sbjct: 512 LEAGIYEVPIIITDSGNPPKSNISILRVKVCQC-DSNGDCTDVHHH 556
Score = 75.5 bits (186), Expect = 2e-16
Identities = 35/202 (17%), Positives = 64/202 (31%), Gaps = 36/202 (17%)
Query: 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAA---SVPVSLTVNLNDINDNAPRLPMIPP 58
++ LDR+ ++ + A + +G S + + + D+NDN P
Sbjct: 171 IITVAAGLDRE--KVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTA-MT 227
Query: 59 IQIQAGEAR--RQIVKIEATDNDLGVNA--EITYSIYHVSNTGLHKFRI----DPRSGVI 110
+ E R + + TD D Y I +F I + G++
Sbjct: 228 FYGEVPENRVDVIVANLTVTDKDQPHTPAWNAAYRI--SGGDPTGRFAILTDPNSNDGLV 285
Query: 111 ETTGKLI--AGEQYSITVQATD--------TGGKSSQTIVEVSVV----PGPNTRSPVFQ 156
+ + +TV A + S V V+V+ P F
Sbjct: 286 TVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN------PYFA 339
Query: 157 QNTYDVNVSEGASINSTVATIT 178
N + EG + + T+T
Sbjct: 340 PNPKIIRQEEGLHAGTMLTTLT 361
Score = 72.0 bits (177), Expect = 3e-15
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 9/131 (6%)
Query: 55 MIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIY--HVSNTGLHKFRIDPRSGVIET 112
+IPPI + ++ +D N + YS+ F I+P SG +
Sbjct: 3 VIPPINLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSV 62
Query: 113 TGKL----IAGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTYDVNVSEG 167
T L IA ++ + A D G + +++ + V N P F ++ +V EG
Sbjct: 63 TKPLDRELIA--RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEG 120
Query: 168 ASINSTVATIT 178
+ + V T+T
Sbjct: 121 SKPGTYVMTVT 131
Score = 68.1 bits (167), Expect = 6e-14
Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 24/161 (14%)
Query: 1 YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSL------TVNLNDINDNAPRLP 54
LV + +D + F V A + A + +V + D+N+N P
Sbjct: 283 GLVTVVKPIDFETNR--MFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFA 339
Query: 55 MIPPIQIQAGEARR---QIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIE 111
P I+ E + + A D D + I Y+ +S+ + +IDP +G I
Sbjct: 340 P-NPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTK--LSDPA-NWLKIDPVNGQIT 395
Query: 112 TTGKL------IAGEQYSITVQATDTG--GKSSQTIVEVSV 144
T L + Y+ T A+D G S +++ +
Sbjct: 396 TIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYL 436
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 97.4 bits (243), Expect = 5e-24
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 19/192 (9%)
Query: 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQI 61
L V++ LDR+ K+ A G A P+ + + + D NDN P +
Sbjct: 60 LKVTQP-LDRE--AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ-EVFEG 115
Query: 62 QAGEARR---QIVKIEATDNDLGV---NAEITYSIY--HVSNTGLHKFRIDPRSGVIETT 113
E ++K+ ATD D V NA I Y+I + F ++ +GVI
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 114 GKLI---AGEQYSITVQATDTGG--KSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGA 168
+ + Y++ VQA D G S+ ++V N +PVF +TY V E
Sbjct: 176 TSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK-DINDNAPVFNPSTYQGQVPENE 234
Query: 169 SINSTVATITVS 180
+N+ +AT+ V+
Sbjct: 235 -VNARIATLKVT 245
Score = 77.8 bits (192), Expect = 3e-17
Identities = 45/192 (23%), Positives = 69/192 (35%), Gaps = 27/192 (14%)
Query: 4 VSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQA 63
V LDR+ + + V A + QG S + + DINDNAP Q Q
Sbjct: 174 VLTSGLDRE--SYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNP-STYQGQV 230
Query: 64 GEAR--RQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRS----GVIETTGKLI 117
E +I ++ TD+D +Y V N +F + G+++T L
Sbjct: 231 PENEVNARIATLKVTDDDAPNTPAWKA-VYTVVNDPDQQFVVVTDPTTNDGILKTAKGLD 289
Query: 118 --AGEQYSITVQATDTGGK-----SSQTIVEVSVV----PGPNTRSPVFQQNTYDVNVSE 166
A +QY + V+ + S V V VV P+F V V E
Sbjct: 290 FEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEA------PIFMPAERRVEVPE 343
Query: 167 GASINSTVATIT 178
+ + + T
Sbjct: 344 DFGVGQEITSYT 355
Score = 76.2 bits (188), Expect = 1e-16
Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 13/162 (8%)
Query: 9 LDR---DPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRL-PMIPPIQIQAG 64
+DR + + +IA + A+ +L + L D+NDNAP P +
Sbjct: 394 MDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNP 453
Query: 65 EARRQIVKIEATDNDLGVNAE-ITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQ-- 121
+ I D DL N T + H + + + E
Sbjct: 454 QP----HIITILDPDLPPNTSPFTAELTH-GASVNWTIEYNDAAQESLILQPRKDLEIGE 508
Query: 122 YSITVQATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVN 163
Y I ++ D K T ++V V + + +
Sbjct: 509 YKIHLKLADNQNKDQVTTLDVHVCD-CEGTVNNCMKAHHHHH 549
Score = 69.7 bits (171), Expect = 2e-14
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 15/134 (11%)
Query: 55 MIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSI--YHVSNTGLHKFRIDPRSGVIET 112
+IPPI E + ++ ++ YSI + F I+ +G ++
Sbjct: 3 VIPPISCPENEKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKV 62
Query: 113 TGKL----IAGEQYSITVQATDTGGK--SSQTIVEVSV--VPGPNTRSPVFQQNTYDVNV 164
T L IA +Y + A + G+ + ++V N P F Q ++ +V
Sbjct: 63 TQPLDREAIA--KYILYSHAVSSNGEAVEDPMEIVITVTDQ---NDNRPEFTQEVFEGSV 117
Query: 165 SEGASINSTVATIT 178
+EGA ++V ++
Sbjct: 118 AEGAVPGTSVMKVS 131
Score = 68.9 bits (169), Expect = 4e-14
Identities = 34/191 (17%), Positives = 73/191 (38%), Gaps = 27/191 (14%)
Query: 1 YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVS---LTVNLNDINDNAPRLPMIP 57
++ + + LD + ++ V ++ S+ S +TV++ D+N+ AP
Sbjct: 280 GILKTAKGLDFEAKQ--QYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMP-A 335
Query: 58 PIQIQAGEARR---QIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTG 114
+++ E +I A + D ++ +ITY I +T + I+P +G I T
Sbjct: 336 ERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRI--WRDTA-NWLEINPETGAIFTRA 392
Query: 115 KL-------IAGEQYSITVQATDTGG--KSSQTIVEVSV--VPGPNTRSPVFQQNTYDVN 163
++ + Y + ATD G + + + + V N +P+ +
Sbjct: 393 EMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDV---NDNAPIPEPRNMQFC 449
Query: 164 VSEGASINSTV 174
T+
Sbjct: 450 QRNPQPHIITI 460
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 97.6 bits (243), Expect = 5e-24
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 19/192 (9%)
Query: 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQI 61
++V++ LDR+ K+ A + G+ P+ +T+N+ D NDN P+ +
Sbjct: 215 MLVTRP-LDRE--EYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQ-DVFRG 270
Query: 62 QAGEARR---QIVKIEATDND---LGVNAEITYSI--YHVSNTGLHKFRIDPRSGVIETT 113
E + Q++ + ATD D +N ++YSI + F I+ +GVI
Sbjct: 271 SVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI 330
Query: 114 GKLI---AGEQYSITVQATDTGGK--SSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGA 168
G + +Y++TVQATD G S + + + N +P+F TY V E
Sbjct: 331 GTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT-DANDNAPIFDPKTYTALVPENE 389
Query: 169 SINSTVATITVS 180
I V ++V+
Sbjct: 390 -IGFEVQRLSVT 400
Score = 77.6 bits (191), Expect = 4e-17
Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 21/178 (11%)
Query: 17 GKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLP------MIPPIQIQAGEARRQI 70
V ++ + + S + + + L +IPPI++ E
Sbjct: 114 HSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFP 173
Query: 71 VKIEATDNDLGVNAEITYSIY--HVSNTGLHKFRIDPRSGVIETTGKL----IAGEQYSI 124
++ ++ ++ YSI N FRI+ +G + T L +Y +
Sbjct: 174 KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYD--KYVL 231
Query: 125 TVQATDTGGK--SSQTIVEVSV--VPGPNTRSPVFQQNTYDVNVSEGASINSTVATIT 178
+ A G + ++V N P F Q+ + +V EG + V ++
Sbjct: 232 SSHAVSENGSPVEEPMEITINVIDQ---NDNRPKFTQDVFRGSVREGVQPGTQVMAVS 286
Score = 75.7 bits (186), Expect = 2e-16
Identities = 37/194 (19%), Positives = 65/194 (33%), Gaps = 27/194 (13%)
Query: 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQI 61
+ + LDR+ ++ V A + +G SV + + D NDNAP
Sbjct: 327 ISLIGTGLDRE--KFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDP-KTYTA 383
Query: 62 QAGEAR--RQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDP----RSGVIETTGK 115
E ++ ++ TD D+ +Y + F I G++ T
Sbjct: 384 LVPENEIGFEVQRLSVTDLDMPGTPAWQA-VYKIRVNEGGFFNITTDPESNQGILTTAKG 442
Query: 116 LI--AGEQYSITVQATD-----TGGKSSQTIVEVSVV----PGPNTRSPVFQQNTYDVNV 164
L +QY + + + +S V V+V P F V+V
Sbjct: 443 LDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA------PFFVPAVSRVDV 496
Query: 165 SEGASINSTVATIT 178
SE S + ++
Sbjct: 497 SEDLSRGEKIISLV 510
Score = 75.3 bits (185), Expect = 2e-16
Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 11/198 (5%)
Query: 3 VVSKENLDR--DPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQ 60
V NLDR + + ++ + + + +L +++ D+NDN P P
Sbjct: 543 VTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV---PSPRV 599
Query: 61 IQAGEARRQIVKIEATDNDLGVNAE-ITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAG 119
+ + + +D D+ N S+ H S+ G
Sbjct: 600 FTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTW--KAELDSKGTSMLLSPTQQL 657
Query: 120 EQ--YSITVQATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATI 177
++ YSI V +D T+V + V ++ Q+ +
Sbjct: 658 KKGDYSIYVLLSDAQNNPQLTVVNAT-VCSCEGKAIKCQEKLVGGFDLPIILVILGSVLA 716
Query: 178 TVSRLASGCAIMNKEENS 195
+ + +++
Sbjct: 717 LLILFLLLLLFLKRKKVV 734
Score = 72.2 bits (177), Expect = 3e-15
Identities = 29/188 (15%), Positives = 70/188 (37%), Gaps = 22/188 (11%)
Query: 1 YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVS---LTVNLNDINDNAPRLPMIP 57
++ + + LD + ++ Q+ + + +P S +TV + D+N+ P
Sbjct: 435 GILTTAKGLDFELRK--QYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVP-A 490
Query: 58 PIQIQAGEARR---QIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTG 114
++ E +I+ + A D D +++Y I ++ ++ +G++ G
Sbjct: 491 VSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI--GNDPA-RWLTVNKDNGIVTGNG 547
Query: 115 KL------IAGEQYSITVQATDTG--GKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSE 166
L + Y++ + TD G + + + V+ N PV + +
Sbjct: 548 NLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV-NDNGPVPSPRVFTMCDQN 606
Query: 167 GASINSTV 174
T+
Sbjct: 607 PEPQVLTI 614
Score = 50.6 bits (121), Expect = 6e-08
Identities = 16/133 (12%), Positives = 36/133 (27%), Gaps = 18/133 (13%)
Query: 24 IAREKQGTAASVPVSLTVNLNDINDNAPRLPM------IPPIQIQAGEARRQIVKIEATD 77
A + + D++ P + +++ G R++ K+ +D
Sbjct: 8 NASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERG---RKLGKVNFSD 64
Query: 78 NDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTG-KLIAGEQYSITVQATDTGGKSS 136
+ FR+ P V+ KL +++I+ S+
Sbjct: 65 CTTRKHGLYDVGDSR--------FRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHST 116
Query: 137 QTIVEVSVVPGPN 149
V
Sbjct: 117 NIAVASKRHRSGE 129
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 96.6 bits (241), Expect = 9e-24
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 16/176 (9%)
Query: 18 KFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARR---QIVKIE 74
K+ A + G+ P+ +T+N+ D NDN P+ + E + Q++ +
Sbjct: 79 KYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQ-DVFRGSVREGVQPGTQVMAVS 137
Query: 75 ATDND---LGVNAEITYSI--YHVSNTGLHKFRIDPRSGVIETTGKLI---AGEQYSITV 126
ATD D +N ++YSI + F I+ +GVI G + +Y++TV
Sbjct: 138 ATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTV 197
Query: 127 QATDTGGK--SSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVS 180
QATD G S + + + N +P+F TY V E I V ++V+
Sbjct: 198 QATDLEGAGLSVEGKAIIQIT-DANDNAPIFDPKTYTALVPENE-IGFEVQRLSVT 251
Score = 74.7 bits (184), Expect = 4e-16
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 10/142 (7%)
Query: 9 LDR--DPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEA 66
LDR + + ++ + + + +L +++ D+NDN P P +
Sbjct: 400 LDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV---PSPRVFTMCDQ 456
Query: 67 RRQIVKIEATDNDLGVNAE-ITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQ--YS 123
+ + +D D+ N S+ H S+ G ++ YS
Sbjct: 457 NPEPQVLTISDADIPPNTYPYKVSLSHGSDLTW--KAELDSKGTSMLLSPTQQLKKGDYS 514
Query: 124 ITVQATDTGGKSSQTIVEVSVV 145
I V +D T+V +V
Sbjct: 515 IYVLLSDAQNNPQLTVVNATVC 536
Score = 70.0 bits (172), Expect = 1e-14
Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 29/193 (15%)
Query: 4 VSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQA 63
+ LDR+ ++ V A + +G SV + + D NDNAP
Sbjct: 180 LIGTGLDRE--KFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDP-KTYTALV 236
Query: 64 GEAR--RQIVKIEATDNDL-GVNAEITYSIYHVSNTGLHKFRIDP----RSGVIETTGKL 116
E ++ ++ TD D+ G A + F I G++ T L
Sbjct: 237 PENEIGFEVQRLSVTDLDMPGTPAWQAVYK--IRVNEGGFFNITTDPESNQGILTTAKGL 294
Query: 117 I--AGEQYSITVQATD-----TGGKSSQTIVEVSVV----PGPNTRSPVFQQNTYDVNVS 165
+QY + + + +S V V+V P F V+VS
Sbjct: 295 DFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA------PFFVPAVSRVDVS 348
Query: 166 EGASINSTVATIT 178
E S + ++
Sbjct: 349 EDLSRGEKIISLV 361
Score = 66.9 bits (164), Expect = 2e-13
Identities = 30/190 (15%), Positives = 70/190 (36%), Gaps = 26/190 (13%)
Query: 1 YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVS---LTVNLNDINDNAPRLPMIP 57
++ + + LD + ++ Q+ + + +P S +TV + D+N+ P
Sbjct: 286 GILTTAKGLDFELRK--QYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVP-A 341
Query: 58 PIQIQAGEARR---QIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTG 114
++ E +I+ + A D D +++Y I ++ ++ +G++ G
Sbjct: 342 VSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI--GNDPA-RWLTVNKDNGIVTGNG 398
Query: 115 KL------IAGEQYSITVQATDTG--GKSSQTIVEVSV--VPGPNTRSPVFQQNTYDVNV 164
L + Y++ + TD G + + + V V N PV + +
Sbjct: 399 NLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV---NDNGPVPSPRVFTMCD 455
Query: 165 SEGASINSTV 174
T+
Sbjct: 456 QNPEPQVLTI 465
Score = 66.6 bits (163), Expect = 2e-13
Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 15/134 (11%)
Query: 55 MIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSI--YHVSNTGLHKFRIDPRSGVIET 112
+IPPI++ E ++ ++ ++ YSI N FRI+ +G +
Sbjct: 9 VIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLV 68
Query: 113 TGKL----IAGEQYSITVQATDTGG--KSSQTIVEVSV--VPGPNTRSPVFQQNTYDVNV 164
T L +Y ++ A G + ++V N P F Q+ + +V
Sbjct: 69 TRPLDREEYD--KYVLSSHAVSENGSPVEEPMEITINVIDQ---NDNRPKFTQDVFRGSV 123
Query: 165 SEGASINSTVATIT 178
EG + V ++
Sbjct: 124 REGVQPGTQVMAVS 137
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 94.7 bits (236), Expect = 9e-24
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 26/191 (13%)
Query: 6 KENLDRDPPNPGKFRFQVIAREKQGTAA-SVPVSLTVNLNDINDNAPRLPMIPPIQIQAG 64
+ LDR+ ++ A + + P + + DINDNAP P
Sbjct: 60 IKRLDREEKA--EYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLN-GPYHATVP 116
Query: 65 EARR---QIVKIEATDND---LGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLI- 117
E + + ATD D G +A++ YSI G F I+P + +I+T +
Sbjct: 117 EMSILGTSVTNVTATDADDPVYGNSAKLVYSI----LEGQPYFSIEPETAIIKTALPNMD 172
Query: 118 --AGEQYSITVQATDTGGK----SSQTIVEVSV--VPGPNTRSPVFQQNTYDVNVSEGAS 169
A E+Y + +QA D GG S T + V++ V N P F Q+ Y +V E
Sbjct: 173 REAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDV---NDNPPKFAQSLYHFSVPEDVV 229
Query: 170 INSTVATITVS 180
+ + + + +
Sbjct: 230 LGTAIGRVKAN 240
Score = 71.2 bits (175), Expect = 4e-15
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 69 QIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLI--AGEQYSITV 126
+V TD D G + +I Y + + F+I+ +G I +L +Y++T
Sbjct: 19 ILVGRLHTDLDPG-SKKIKYIL--SGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTA 75
Query: 127 QATDTGGK---SSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVS 180
QA D + + V N +P F Y V E + + ++V +T +
Sbjct: 76 QAVDFETNKPLEPPSEFIIKVQ-DINDNAPEFLNGPYHATVPEMSILGTSVTNVTAT 131
Score = 58.8 bits (143), Expect = 8e-11
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 37 VSLTVNLNDINDNAPRLPMIPPIQIQAGEARR---QIVKIEATDNDLGVNAEITYSIYHV 93
+LTV L D+NDN P+ E I +++A D D+G NA+ +Y I +
Sbjct: 199 TTLTVTLTDVNDNPPKFAQ-SLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDI--I 255
Query: 94 SNTGLHKFRI----DPRSGVIETTGKLI--AGEQYSITVQATDTGGK---------SSQT 138
G F I + GVI L + Y++ V+A +
Sbjct: 256 DGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTA 315
Query: 139 IVEVSV 144
V++ V
Sbjct: 316 TVKIVV 321
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 84.0 bits (208), Expect = 2e-20
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 16/142 (11%)
Query: 18 KFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARR---QIVKIE 74
+F + A + G P+ + +N+ D+NDN P E + ++ +
Sbjct: 73 RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLH-QVWNGSVPEGSKPGTYVMTVT 131
Query: 75 ATDNDL--GVNAEITYSIYH--VSNTGLHKFRIDPRSGVIETTGKLI---AGEQYSITVQ 127
A D D +N + Y I S + F I+ +G I T + +QY++ +Q
Sbjct: 132 AIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQ 191
Query: 128 ATDTGGK-----SSQTIVEVSV 144
ATD G S+ ++V
Sbjct: 192 ATDMEGNPTYGLSNTATAVITV 213
Score = 81.6 bits (202), Expect = 1e-19
Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 9/133 (6%)
Query: 55 MIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIY--HVSNTGLHKFRIDPRSGVIET 112
+IPPI + ++ +D N + YS+ F I+P SG +
Sbjct: 3 VIPPINLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSV 62
Query: 113 TGKL----IAGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTYDVNVSEG 167
T L IA ++ + A D G + +++ + V N P F ++ +V EG
Sbjct: 63 TKPLDRELIA--RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEG 120
Query: 168 ASINSTVATITVS 180
+ + V T+T
Sbjct: 121 SKPGTYVMTVTAI 133
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 83.4 bits (207), Expect = 2e-20
Identities = 21/141 (14%), Positives = 50/141 (35%), Gaps = 15/141 (10%)
Query: 47 NDNAPR-LPMIPPIQIQAGEARR---QIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFR 102
+ P + E + ++ A D D N + + + F
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVS--GEEASRFFA 56
Query: 103 IDPRSGVIETTGKL--IAGEQYSITVQATDTGGKSSQTI-VEVSVVPGPNTRSPVFQQNT 159
++P +GV+ L ++++ +D G ++ + ++V V N +P F
Sbjct: 57 VEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDV---NDNAPTFHNQP 113
Query: 160 YDVNVSEGASINSTVATITVS 180
Y V + E + + + + +
Sbjct: 114 YSVRIPENTPVGTPIFIVNAT 134
Score = 78.4 bits (194), Expect = 2e-18
Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 18/153 (11%)
Query: 1 YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQ 60
+V ++ LDR+ +F + + QG + + + D+NDNAP P
Sbjct: 62 GVVWLRQPLDRE--TKSEFTVEFSVSDHQGVITR---KVNIQVGDVNDNAPTFHN-QPYS 115
Query: 61 IQAGE---ARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLI 117
++ E I + ATD DLG + YS F ID G++ +L
Sbjct: 116 VRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF----QPPSPFFAIDSARGIVTVIQELD 171
Query: 118 --AGEQYSITVQATDTGGK---SSQTIVEVSVV 145
+ Y +TV ATD S+ + + +
Sbjct: 172 YEVTQAYQLTVNATDQDKTRPLSTLANLAIIIT 204
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 78.3 bits (194), Expect = 2e-19
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Query: 41 VNLNDINDNAPRLPMIPPIQIQAGE---ARRQIVKIEATDNDLGVNAEITYSIYHVSNTG 97
+ + NDN+PR + E I+++ A D D+GVN +I Y + +
Sbjct: 2 SSGSSGNDNSPRFEK-SVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESV 60
Query: 98 LHKFRIDPRSGVIETTGKL--IAGEQYSITVQATDTGGK--SSQTIVEVSVV 145
R+D SG + ++ Q TV A D G + + V +++
Sbjct: 61 RRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIK 112
Score = 30.9 bits (71), Expect = 0.082
Identities = 5/27 (18%), Positives = 17/27 (62%)
Query: 152 SPVFQQNTYDVNVSEGASINSTVATIT 178
SP F+++ Y+ +++E ++ + + +
Sbjct: 11 SPRFEKSVYEADLAENSAPGTPILQLR 37
Score = 28.6 bits (65), Expect = 0.64
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 6 KENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAP 51
+DR+ N + RF V+AR++ + ++ +N+ D NDN P
Sbjct: 76 LHRIDREEVN--QLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 80.5 bits (199), Expect = 4e-19
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Query: 56 IPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIET 112
+ PI I Q R + K+ +D G +T V FRI+ +G +
Sbjct: 5 VSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKG--VDQDPKGTFRINENTGSVSV 62
Query: 113 TGKL----IAGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTYDVNVSEG 167
T L IA Y + V+ TD GK+ + V + V V N P+F++ Y +V EG
Sbjct: 63 TRTLDRETIA--TYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEG 120
Query: 168 ASINSTVATITVS 180
+ +TV +T
Sbjct: 121 SPTGTTVMRMTAF 133
Score = 76.7 bits (189), Expect = 9e-18
Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 19/145 (13%)
Query: 18 KFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARR---QIVKIE 74
++ V + G PV L V + D NDN P P E ++++
Sbjct: 73 TYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFRE-GPYIGHVMEGSPTGTTVMRMT 131
Query: 75 ATDND--LGVNAEITYSIYH--VSNTGLHKFRIDPRSGVIETTGK-------LIAGEQYS 123
A D D NA + Y+I + F IDP G I T + +Y
Sbjct: 132 AFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYE 191
Query: 124 ITVQATDTGGK----SSQTIVEVSV 144
+ ++A D G + + +
Sbjct: 192 LIIEAQDMAGLDVGLTGTATATIVI 216
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 80.1 bits (198), Expect = 4e-19
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 14/140 (10%)
Query: 18 KFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARR---QIVKIE 74
K+ A G A P+ + + + D NDN P + E ++K+
Sbjct: 73 KYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ-EVFEGSVAEGAVPGTSVMKVS 131
Query: 75 ATDNDLGV---NAEITYSIY--HVSNTGLHKFRIDPRSGVIETTGKLI---AGEQYSITV 126
ATD D V NA I Y+I + F ++ +GVI + + Y++ V
Sbjct: 132 ATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV 191
Query: 127 QATDTGGK--SSQTIVEVSV 144
QA D G+ S+ ++V
Sbjct: 192 QAADLQGEGLSTTAKAVITV 211
Score = 77.8 bits (192), Expect = 3e-18
Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 9/132 (6%)
Query: 56 IPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSI--YHVSNTGLHKFRIDPRSGVIETT 113
I I E + ++ ++ YSI + F I+ +G ++ T
Sbjct: 4 IAAISCPENEKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63
Query: 114 GKL----IAGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQNTYDVNVSEGA 168
L IA +Y + A + G++ + +E+ + V N P F Q ++ +V+EGA
Sbjct: 64 QPLDREAIA--KYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGA 121
Query: 169 SINSTVATITVS 180
++V ++ +
Sbjct: 122 VPGTSVMKVSAT 133
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 77.1 bits (191), Expect = 6e-19
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 41 VNLNDINDNAPRLPMIPPIQIQAGE---ARRQIVKIEATDNDLGVNAEITYSIY-HVSNT 96
+ + NDN P +++ E ++++ ATD D+G NAEI Y V+
Sbjct: 2 SSGSSGNDNRPVFKE-GQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPA 60
Query: 97 GLHKFRIDPRSGVIETTGKLI--AGEQYSITVQATDTGGKSSQTIVEVSVV 145
F ++ +G+I L + +TV A+D ++ V ++V
Sbjct: 61 TKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVT 111
Score = 30.9 bits (71), Expect = 0.10
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 152 SPVFQQNTYDVNVSEGASINSTVATIT 178
PVF++ +V++ E A + ++V +
Sbjct: 11 RPVFKEGQVEVHIPENAPVGTSVIQLH 37
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 78.8 bits (194), Expect = 3e-18
Identities = 25/173 (14%), Positives = 42/173 (24%), Gaps = 32/173 (18%)
Query: 2 LVVSKENLDR------------DPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDN 49
L+ + +LD P + + + P V + N +
Sbjct: 66 LLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTS 125
Query: 50 APRLPMIPPIQIQAGEARRQ------------IVKIEATDNDLGVNAEITYSIYHVSNTG 97
P + P ++ E R L + Y +
Sbjct: 126 FPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGL- 184
Query: 98 LHKFRIDPRSGVIETTGKLI--AGEQYSITVQATDTGGK---SSQTIVEVSVV 145
FR P S + T L E+Y + T G V+V
Sbjct: 185 --PFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVY 235
Score = 58.4 bits (141), Expect = 9e-11
Identities = 16/149 (10%), Positives = 32/149 (21%), Gaps = 32/149 (21%)
Query: 69 QIVKIEATDNDL--GVNAEITYSIYHVSNTGLHK---FRIDPRSGVIETTGKL------- 116
++ + A + + + +Y T LH+ RI +G++ L
Sbjct: 21 PLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEK 80
Query: 117 ---IAGEQYSITVQATDT--------GGKSSQTIVEVSV---------VPGPNTRSPVFQ 156
+TV G V R F
Sbjct: 81 LSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFP 140
Query: 157 QNTYDVNVSEGASINSTVATITVSRLASG 185
+ + E + +
Sbjct: 141 ETRPSFRIRENRPPGTFHQFRLLPVQFLC 169
Score = 36.1 bits (83), Expect = 0.004
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 1 YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAA-SVPVSLTVNLNDINDNAPRLP 54
V ++ LDR+ K+ + G V V V + D +D+AP
Sbjct: 193 LEVSTRWALDRE--QREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245
Score = 28.3 bits (63), Expect = 1.5
Identities = 2/24 (8%), Positives = 9/24 (37%)
Query: 155 FQQNTYDVNVSEGASINSTVATIT 178
F ++ Y + + + + +
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVH 26
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 75.8 bits (187), Expect = 2e-17
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 19/141 (13%)
Query: 18 KFRFQVIAREKQ-GTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARR---QIVKI 73
+ + A ++ G + ++DINDN P E +V++
Sbjct: 70 VYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTK-DVYTATVPEMADVGTFVVQV 128
Query: 74 EATDND---LGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLI---AGEQYSITVQ 127
ATD D G +A++ YSI + F ++ +G+I+T + EQY + +Q
Sbjct: 129 TATDADDPTYGNSAKVVYSI--LQGQPY--FSVESETGIIKTALLNMDRENREQYQVVIQ 184
Query: 128 ATDTGGK----SSQTIVEVSV 144
A D GG+ S T V +++
Sbjct: 185 AKDMGGQMGGLSGTTTVNITL 205
Score = 74.3 bits (183), Expect = 7e-17
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 69 QIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKL----IAGEQYSI 124
Q V +D D G + + Y + + F I+ +G I+ T +L Y +
Sbjct: 19 QYVGKLHSDQDRG-DGSLKYIL--SGDGAGDLFIINENTGDIQATKRLDREEKP--VYIL 73
Query: 125 TVQATDTGGK---SSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVS 180
QA + ++ + + N P+F ++ Y V E A + + V +T +
Sbjct: 74 RAQAVNRRTGRPVEPESEFIIKIHDI-NDNEPIFTKDVYTATVPEMADVGTFVVQVTAT 131
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 75.4 bits (186), Expect = 2e-17
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 18 KFRFQVIAREKQGTAA-SVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARR---QIVKI 73
++ +++ + P + ++DINDNAP E R + K+
Sbjct: 68 EYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQ-KIFNGSVPEMSRLGTSVTKV 126
Query: 74 EATDND---LGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLI--AGEQYSITVQA 128
A D D + +A +TY I G F +D + L + Y I V+A
Sbjct: 127 TAEDADDPTVAGHATVTYQIIK----GNEYFTVDDSGVIFTARADLDRESQSAYEIIVKA 182
Query: 129 TDTGG---KSSQTIVEVSV 144
D G +SS V + +
Sbjct: 183 KDALGLTGESSTATVIIRL 201
Score = 71.2 bits (175), Expect = 9e-16
Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 19/136 (13%)
Query: 55 MIPPIQIQ---AGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIE 111
+ + I+ + K+ ++ N Y I + F++ G I
Sbjct: 3 IWNRMHIREEIDSPLPHHVGKLTSSVG----NKNAMYII--EGESANTIFKVQGYDGDIY 56
Query: 112 TTGKL----IAGEQYSITVQATDTGGK---SSQTIVEVSVVPGPNTRSPVFQQNTYDVNV 164
+L A +Y +T D + + V N +P+F Q ++ +V
Sbjct: 57 AFERLDREKKA--EYELTAHIIDRRNNRSLEPPSKFIIKVS-DINDNAPIFVQKIFNGSV 113
Query: 165 SEGASINSTVATITVS 180
E + + ++V +T
Sbjct: 114 PEMSRLGTSVTKVTAE 129
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 74.2 bits (183), Expect = 8e-17
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 19/142 (13%)
Query: 18 KFRFQVIAREK-QGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARR---QIVKI 73
++ A ++ P V + DINDN P E ++++
Sbjct: 71 QYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLH-EIYHANVPERSNVGTSVIQV 129
Query: 74 EATDND---LGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLI---AGEQYSITVQ 127
A+D D G +A++ YSI G F ++ ++G+I T + A E+Y + +Q
Sbjct: 130 TASDADDPTYGNSAKLVYSILE----GQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQ 185
Query: 128 ATDTGGK----SSQTIVEVSVV 145
A D GG S T V +++
Sbjct: 186 AKDMGGHMGGLSGTTKVTITLT 207
Score = 73.1 bits (180), Expect = 2e-16
Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 9/117 (7%)
Query: 69 QIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKL--IAGEQYSITV 126
+V +D D G + I Y + F ID +SG I T L QY++
Sbjct: 20 VLVGRLHSDIDSG-DGNIKYIL--SGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMA 76
Query: 127 QATDTGG---KSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVS 180
QA D + V V N P F Y NV E +++ ++V +T S
Sbjct: 77 QAVDRDTNRPLEPPSEFIVKVQDI-NDNPPEFLHEIYHANVPERSNVGTSVIQVTAS 132
Score = 31.1 bits (71), Expect = 0.16
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAA--SVPVSLTVNLNDINDNAPR 52
+ + N+DR+ ++ + A++ G S +T+ L D + +
Sbjct: 165 IRTALPNMDRE--AKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 68.5 bits (168), Expect = 1e-15
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 55 MIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIY--HVSNTGLHKFRIDPRSGVIET 112
+IPPI + ++ + N + YS+ F I+P SG +
Sbjct: 5 VIPPINLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSV 64
Query: 113 TGKL----IAGEQYSITVQATDTGGKSSQTIVEVSV 144
T L IA ++ + A D G + +++ +
Sbjct: 65 TKPLDRELIA--RFHLRAHAVDINGNQVENPIDIVI 98
Score = 37.6 bits (88), Expect = 4e-04
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 9 LDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPR 52
LDR+ +F + A + G P+ + +N+ D+NDN P
Sbjct: 68 LDRE--LIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPE 109
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 67.8 bits (166), Expect = 2e-15
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 55 MIPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIE 111
++ PI I Q R + K+ +D G +T V FRI+ +G +
Sbjct: 4 VVSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKG--VDQDPKGTFRINENTGSVS 61
Query: 112 TTGKL--IAGEQYSITVQATDTGGKSSQTIVEVSV 144
T L Y + V+ TD GK+ + V + V
Sbjct: 62 VTRTLDRETIATYQLYVETTDASGKTLEGPVPLEV 96
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 65.8 bits (161), Expect = 9e-15
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 56 IPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIET 112
P I I Q + + ++ +D G ++ V F+I+ SG +
Sbjct: 4 APSISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKG--VDQEPKGIFKINENSGEVSV 61
Query: 113 TGKL----IAGEQYSITVQATDTGGKSSQTIVEVSV 144
T L I Y + V+ TD GK+ + V++ +
Sbjct: 62 TKALDREAIP--SYQLQVETTDENGKTIEGPVDLEI 95
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 62.3 bits (152), Expect = 3e-13
Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Query: 52 RLPMIPPIQIQAGE---ARRQIVKIEATDNDLGVNAEITYSI--YHVSNTGLHKFRIDPR 106
R + P+ ++ GE + I KI +D +ITY ++ F +
Sbjct: 10 RAWITAPVALREGEDLSKKNPIAKI-HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKD 68
Query: 107 SGVIETTGKL----IAGEQYSITVQATDTGGKSSQTIVEVSV-VPGPNTRSPVFQQN 158
+G + T L + +T A D G + + +E+ + V N PVF Q+
Sbjct: 69 TGELNVTSILDREETP--FFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQD 123
Score = 38.9 bits (91), Expect = 2e-04
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 9 LDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPR 52
LDR+ F A + +G P+ L + + DINDN P
Sbjct: 78 LDRE--ETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPV 119
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 62.0 bits (151), Expect = 4e-13
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 50 AP-RLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIY--HVSNTGLHKFRIDPR 106
P +IPPI E + ++ ++ YSI + F I+
Sbjct: 1 GPLGSWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 107 SGVIETTGKL--IAGEQYSITVQATDTGGKSSQTIVEVSV 144
+G ++ T L Y++ A + G + + +E+ +
Sbjct: 61 TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILI 100
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 61.7 bits (150), Expect = 4e-13
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 56 IPPIQI---QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIET 112
PI I Q R + K+ ++ G ++ V FRI+ SG +
Sbjct: 4 ATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKG--VDQDPKGIFRINEISGDVSV 61
Query: 113 TGKL--IAGEQYSITVQATDTGGKSSQTIVEVSV 144
T L A Y + V+ TD GK V + +
Sbjct: 62 TRPLDREAIANYELEVEVTDLSGKIIDGPVRLDI 95
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 53.2 bits (128), Expect = 6e-10
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 69 QIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKL--IAGEQYSITV 126
V +D D G + I Y + + F ID +G I +L QY++
Sbjct: 20 LYVGKLHSDMDRG-DGSIKYILSGEGAGIV--FTIDDTTGDIHAIQRLDREERSQYTLRA 76
Query: 127 QATDTGGK---SSQTIVEVSV 144
QA D ++ + +
Sbjct: 77 QALDRRTGRPMEPESEFIIKI 97
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 49.3 bits (118), Expect = 1e-08
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 69 QIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKL--IAGEQYSITV 126
+V TD D G + +I Y + + F+I+ +G I +L +Y++T
Sbjct: 19 ILVGRLHTDLDPG-SKKIKYILSGDGAGTI--FQINDITGDIHAIKRLDREEKAEYTLTA 75
Query: 127 QATDTGGK---SSQTIVEVSV 144
QA D + + V
Sbjct: 76 QAVDFETNKPLEPPSEFIIKV 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.006
Identities = 37/217 (17%), Positives = 67/217 (30%), Gaps = 51/217 (23%)
Query: 5 SKENLDRDPPNP-----GKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMI--- 56
S EN + P+P + QV + T + +P V ++ +N + ++
Sbjct: 327 SLEN-NEGVPSPMLSISNLTQEQVQDYVNK-TNSHLPAGKQVEISLVN--GAK-NLVVSG 381
Query: 57 PPIQIQAGEARRQIVKIEATDNDLGVN-AEITYS------------I---YHVS--NTGL 98
PP + + K +A G++ + I +S + +H
Sbjct: 382 PPQSLYG--LNLTLRKAKAPS---GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 99 HKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGG---KSSQTIVEVSVVPGPNTRSPVF 155
D + + I V T G S +I E +V R PV
Sbjct: 437 DLINKDLVKNNVS-----FNAKDIQIPVYDTFDGSDLRVLSGSISE-RIVD-CIIRLPVK 489
Query: 156 QQNTYDVNVSE----GASINSTVATITVSRLASGCAI 188
+ T + G S + +T R G +
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLT-HRNKDGTGV 525
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 33.6 bits (77), Expect = 0.023
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 88 YSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIVEVSVVPG 147
Y + +VS +G P L AG +Y+I++ A KS T ++ S V G
Sbjct: 37 YRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVG 96
Query: 148 P 148
Sbjct: 97 S 97
Score = 26.6 bits (59), Expect = 3.9
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 88 YSIYHVSNTGLHKFRIDPRSGVIETT-GKLIAGEQYSITVQATDTGGKSSQTIVEVSVVP 146
Y + +V TG + T KL+ G Y++ + + +S +
Sbjct: 125 YRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGILKTAL 184
>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor,
hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB:
2w9p_A
Length = 87
Score = 30.6 bits (69), Expect = 0.092
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 109 VIETTGKLIAGEQYSITVQATDTGGKSSQTIVEVSVVPGPNTRS 152
+ +++AG Y IT+ ATD GK ++ V + +
Sbjct: 37 NLNVKEQVVAGIMYYITLAATDDAGKKKIYKAKIWVKEWEDFKK 80
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 31.7 bits (72), Expect = 0.13
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 83 NAEIT-YSIYHVSNTGLHKFRIDPRSGVIETT-GKLIAGEQYSITVQATDTGGKSSQTIV 140
IT + + V G + + V T L G Y I + + +SS ++
Sbjct: 137 TETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVI 196
Query: 141 EVSVVPGP 148
+ S
Sbjct: 197 DASTAIDA 204
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 31.8 bits (72), Expect = 0.15
Identities = 11/64 (17%), Positives = 22/64 (34%)
Query: 112 TTGKLIAGEQYSITVQATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASIN 171
+ + G Y + ++A D G S VE+++ + N N S +
Sbjct: 78 ASFEYGQGGLYQMEIEACDATGCSKSAPVEITIADTDGSHLKPLTMNVDPNNKSYNTDPS 137
Query: 172 STVA 175
+
Sbjct: 138 IVMG 141
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 28.9 bits (65), Expect = 0.47
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 88 YSIYHVSNTGLHKFRIDPRSGVIETT-GKLIAGEQYSITVQATDTGGKSSQTIVEVSVVP 146
+ +VS+ G H + + G L + Y++ V GG SS V+
Sbjct: 38 VRVTYVSSEGGHSGQTEAPGNATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKK 97
Query: 147 GP 148
P
Sbjct: 98 AP 99
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.54
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 8/28 (28%)
Query: 67 RRQIVKIE------ATDN--DLGVNAEI 86
++ + K++ A D+ L + A +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATM 46
Score = 25.7 bits (55), Expect = 8.8
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 16/40 (40%)
Query: 27 EKQGTAASVPVSLTVNLN---DINDNAPRLPMIPPIQIQA 63
EKQ ++ L +L D D+AP L I+A
Sbjct: 18 EKQ----ALK-KLQASLKLYAD--DSAPAL------AIKA 44
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI
BIG-open NESG, cell WALL, hydrolase,
peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Length = 103
Score = 27.9 bits (62), Expect = 0.93
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 23/118 (19%)
Query: 45 DINDNAPRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRID 104
+ +D P+L + I G++ + ++ A D + G ++T I K
Sbjct: 5 ETSDLEPKLTVPVGATIHVGDSFVPMAEVLAIDKEDG---DLTSKIKVDGEVDTTK---- 57
Query: 105 PRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIVEVSVVPG--PNTRSPVFQQNTY 160
AG Y +T TD+ G V+V P+ + + +
Sbjct: 58 -------------AGT-YVLTYTVTDSKGHEVTAKQTVTVKVREEVKNDKPILEHHHH 101
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 29.0 bits (65), Expect = 1.00
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 5/72 (6%)
Query: 82 VNAEIT-YSIYHVSNTGLHKFRIDPRSGVIETT----GKLIAGEQYSITVQATDTGGKSS 136
AE Y + + + G + G+ TT L+ G +Y + + A +S
Sbjct: 128 SEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSI 187
Query: 137 QTIVEVSVVPGP 148
+
Sbjct: 188 PATMNARTELDS 199
Score = 27.9 bits (62), Expect = 2.2
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 86 ITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIVEVSVV 145
+ Y + G FR+ P L G +Y +++ A +S + + +
Sbjct: 47 LKYGLVG-GEGGKTTFRLQPPLSQYSVQA-LRPGSRYEVSISAVRGTNESDASSTQFTTE 104
Query: 146 PGP 148
Sbjct: 105 IDA 107
Score = 25.9 bits (57), Expect = 9.9
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 82 VNAEIT-YSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIV 140
+ I Y I ++G+ PR T L G +Y I++ A +S ++ V
Sbjct: 220 ASGPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTV 279
Query: 141 EVS 143
+
Sbjct: 280 DAF 282
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 28.6 bits (64), Expect = 1.2
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 116 LIAGEQYSITVQATDTGGKSSQTIVEVSVVPGP 148
L G +Y +++ A + +S I + S V
Sbjct: 338 LTPGTEYVVSIVALNGREESPLLIGQQSTVSAH 370
Score = 28.2 bits (63), Expect = 1.6
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 57 PPIQIQAGEARRQIVKIEA---TDNDLGV------NAEIT-YSI-YHVSNTGLHKFRIDP 105
PI Q+ + TD+ +G+ ++ I Y I + G+ F
Sbjct: 86 VPISDTIIPEVPQLTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFV 145
Query: 106 RSGVIETT-GKLIAGEQYSITVQATDTGGKSSQTIVEVSVVPGP 148
S V T L G Y I+V GG+S+ T + P
Sbjct: 146 DSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPP 189
Score = 26.7 bits (59), Expect = 5.5
Identities = 17/131 (12%), Positives = 39/131 (29%), Gaps = 16/131 (12%)
Query: 20 RFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARRQIVKI--EATD 77
VI G +A ++ + PP ++ +++
Sbjct: 164 DISVITLINGGESAPTTLTQQT------------AVPPPTDLRFTNIGPDTMRVTWAPPP 211
Query: 78 NDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQ 137
+ N + YS + + + I P + T L+ G +Y ++V + +S+
Sbjct: 212 SIDLTNFLVRYSPVK-NEEDVAELSISPSDNAVVLTN-LLPGTEYVVSVSSVYEQHESTP 269
Query: 138 TIVEVSVVPGP 148
Sbjct: 270 LRGRQKTGLDS 280
Score = 26.7 bits (59), Expect = 5.7
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 83 NAEIT-YSIYHVSNTGLHKFRIDPRSGVIETT---GKLIAGEQYSITVQATDTGGKSS-Q 137
+IT Y I G ++ +++ L G +Y+++V +S
Sbjct: 29 TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPI 88
Query: 138 TIVEVSVVPGP 148
+ + VP
Sbjct: 89 SDTIIPEVPQL 99
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 27.8 bits (62), Expect = 1.4
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 83 NAEIT-YSI-YHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIV 140
N + Y+I Y + + ++D + L Y IT++A + G+
Sbjct: 54 NIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIEN-LDPSSHYVITLKAFNNVGEGIPLYE 112
Query: 141 EVSVVPGP 148
P
Sbjct: 113 SAVTRPHT 120
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 27.2 bits (61), Expect = 1.7
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 16/60 (26%)
Query: 2 LVVSKENLDRD----PPNPGKFRFQVIAREKQGTAASVPVSL---TVNLNDINDNAPRLP 54
L++ KE LDR+ NP FQV+ + PV + L D+ND+AP
Sbjct: 66 LLL-KEKLDREELCGSTNPCILHFQVLLKS--------PVQFIQGEIQLQDVNDHAPEFM 116
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas
hydrolase, PSI-2, protein structure initiative; 2.70A
{Bacteroides fragilis}
Length = 692
Score = 28.2 bits (63), Expect = 2.2
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 2/85 (2%)
Query: 57 PPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKL 116
I + V I D +A+IT + + N GL + + + G+
Sbjct: 161 EQNNITVTDCASPGVYITQKDVS-KKSADITVKV-KLDNAGLQPAAVTLENTIYTQEGQK 218
Query: 117 IAGEQYSITVQATDTGGKSSQTIVE 141
+ S + T S ++
Sbjct: 219 VGTHSRSFDLSPQGTQTYLSTFKLK 243
>3fk4_A Rubisco-like protein; structural genomics, target 9463A, PSI-2,
protein structure initiative; 2.00A {Bacillus cereus
atcc 14579}
Length = 414
Score = 27.7 bits (61), Expect = 2.8
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 101 FRIDPRSGVIETTGKLIAGEQ 121
+ I S +E + IA
Sbjct: 8 YLIHDDSHNLEKKAEQIALGL 28
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 27.5 bits (61), Expect = 2.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 116 LIAGEQYSITVQATDTGGKSSQTIVEVSVVPGPN 149
L Y + + A + G S T+ E S+ P PN
Sbjct: 356 LQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPN 389
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 27.5 bits (61), Expect = 2.9
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 116 LIAGEQYSITVQATDTGGKSSQTIVEVSVVPGP 148
L+ G +Y ++V + +S+
Sbjct: 156 LLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDS 188
Score = 27.5 bits (61), Expect = 3.2
Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 1/80 (1%)
Query: 86 ITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIVEVSVV 145
IT + + + + L G +Y+++V +S +
Sbjct: 36 ITTTPTNGQQGNSLEEVVHADQSSCTFDN-LSPGLEYNVSVYTVKDDKESVPISDTIIPA 94
Query: 146 PGPNTRSPVFQQNTYDVNVS 165
P T + V+
Sbjct: 95 VPPPTDLRFTNIGPDTMRVT 114
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 27.4 bits (61), Expect = 3.0
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 14/103 (13%)
Query: 85 EITYSIYHVSNTGLHKFRIDPRSGVIETT---GKLIAGEQYSITVQA-TDTG-GKSSQTI 139
E+ Y + + N + + L + Y TV+A G G + I
Sbjct: 133 EVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAI 192
Query: 140 VEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRL 182
+ ++ P P+ ++ +++ S L
Sbjct: 193 INLATQPKRPMSIPII------PDIP---IVDAQSGEDYDSFL 226
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 27.6 bits (60), Expect = 3.3
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 116 LIAGEQYSITVQATDTGG---KSSQTIVEVSVVPGPNTRSPVFQQN 158
L Y + VQ GG + +T + P RS + ++
Sbjct: 601 LRPSTLYRLEVQVLTPGGEGPATIKTFRTPELPPSSAHRSHLKHRH 646
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 26.5 bits (58), Expect = 3.3
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 116 LIAGEQYSITVQATDTGGKSSQTIVEVSVVPGP 148
L +G YS+T+ K+ + GP
Sbjct: 77 LRSGTLYSLTLYGLRGPHKADSIQGTARTLSGP 109
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome,
unknown function; 1.72A {Clostridium thermocellum} PDB:
3pdg_A
Length = 190
Score = 26.9 bits (59), Expect = 3.4
Identities = 20/143 (13%), Positives = 39/143 (27%), Gaps = 14/143 (9%)
Query: 12 DPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARRQI- 70
G + + +A G S + P + + P +
Sbjct: 56 TGAAVGAYNLKAVAVLSDGRRIE---SPVTPVLVKVIVKPTVKLTAPKSNVVAYGNEFLK 112
Query: 71 VKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATD 130
+ A+D+D ++ V + R P + G + I+V A D
Sbjct: 113 ITATASDSDGKIS---RVDFL-VDGEVIGSDREAPYEYEWKAV----EGN-HEISVIAYD 163
Query: 131 TGGKSSQ-TIVEVSVVPGPNTRS 152
+S V++ V
Sbjct: 164 DDDAASTPDSVKIFVKQARLEHH 186
Score = 25.7 bits (56), Expect = 9.4
Identities = 7/54 (12%), Positives = 17/54 (31%)
Query: 122 YSITVQATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVA 175
Y++ A + G+ ++ V +V + +V + T
Sbjct: 63 YNLKAVAVLSDGRRIESPVTPVLVKVIVKPTVKLTAPKSNVVAYGNEFLKITAT 116
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 26.1 bits (58), Expect = 3.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 116 LIAGEQYSITVQATDTGGKSSQTIVEVSV 144
L A Y+ TV+A D G S VSV
Sbjct: 58 LAADTSYTFTVKAKDAAGNVSAASNAVSV 86
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 25.9 bits (57), Expect = 3.9
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 116 LIAGEQYSITVQATDTGGKSSQTIVEVSVVPGP 148
L G +Y++++ G +S+ E +
Sbjct: 62 LKPGTEYTVSIYGVKGGHRSNPLSAEFTTGGHH 94
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 26.7 bits (59), Expect = 3.9
Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 15/124 (12%)
Query: 20 RFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARRQIVKIE----A 75
RF+++A + S T + A PM P ++ E V + +
Sbjct: 84 RFRILAVYSNND--NKE-SNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLAS 140
Query: 76 TDNDLGVNAEIT-YSIYHVSNTGLHKFRIDPRSGVIETTGK---LIAGEQYSITVQATDT 131
+ IT Y Y+ ++ ++ G + K L Y +Q+
Sbjct: 141 DAD----EHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSA 196
Query: 132 GGKS 135
S
Sbjct: 197 ASAS 200
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 26.7 bits (58), Expect = 4.3
Identities = 10/125 (8%), Positives = 35/125 (28%), Gaps = 4/125 (3%)
Query: 17 GKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPP---IQIQAGEARRQIVKI 73
+ +V A + + + P + + + +
Sbjct: 77 EPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQ 136
Query: 74 EATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQA-TDTG 132
+ + + E+ Y ++ ++N+ + ++ + L Y + +
Sbjct: 137 KEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHSSYCVVAEIYQPML 196
Query: 133 GKSSQ 137
+ SQ
Sbjct: 197 DRRSQ 201
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 26.6 bits (59), Expect = 4.6
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 125 TVQATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASI 170
V+AT+ GG S T + V P + V+ G +
Sbjct: 78 QVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 102
Score = 26.0 bits (57), Expect = 4.8
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 121 QYSITVQATDTGGKSSQTIVEVSVVPGPN 149
Y T+ D SQ+ V V V
Sbjct: 70 TYVFTLTVKDERNLQSQSSVNVIVKEESG 98
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 26.3 bits (58), Expect = 5.2
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 83 NAEIT-YSIYHVSNTGLHKFRIDPRSGVIETT--GKLIAGEQYSITVQATDTGGKSSQTI 139
++ I Y I V+ D + L G Y I+V GG+S+ T
Sbjct: 48 SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTT 107
Query: 140 VEVSVVPGP 148
+ P
Sbjct: 108 LTQQTAVPP 116
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 26.7 bits (59), Expect = 5.7
Identities = 9/72 (12%), Positives = 21/72 (29%), Gaps = 5/72 (6%)
Query: 83 NAEIT-YSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIVE 141
N +I Y + + + + ++Y T+ + GKS ++
Sbjct: 38 NGKILDYEVTLTRWKS----HLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLT 93
Query: 142 VSVVPGPNTRSP 153
+ T
Sbjct: 94 IPACDFQATHPV 105
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III
domain, tudor-like domain, flagellar biogenesis,
flagellum; 2.51A {Xanthomonas campestris PV}
Length = 138
Score = 25.6 bits (56), Expect = 6.8
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 94 SNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIVEVS 143
S G F D + G +A +Y IT TDT G S+ V
Sbjct: 61 SAAGEVSFAWDGT----DANGNRMAAGKYGITATQTDTAGAKSKLATYVD 106
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; NMR {Geobacter metallireducens}
Length = 122
Score = 25.5 bits (55), Expect = 7.7
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 29 QGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITY 88
+G A + V + V L + + +I G V+ +AT G A
Sbjct: 27 RGAAEAHNVPVAVYLGNPAQGGVEIGRDTISRIPVGGTGLARVQWKATRKLAGRAANPGV 86
Query: 89 SIYHVSNTGLHKFRIDPRSGVIET 112
+Y V +DP + V E+
Sbjct: 87 PVYAV---------VDPDNRVAES 101
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 26.3 bits (57), Expect = 8.7
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 115 KLIAGEQYSITVQATDTGGKSSQTI---VEVSVVPGPNTRSPVFQQNTYDVNVS 165
L E Y+ T+ A + G+S TI + V P T V N+ V +S
Sbjct: 348 MLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLS 401
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 25.8 bits (56), Expect = 8.8
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 86 ITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIVEV 142
+ Y + + + + L+ G +Y + V G+ S +
Sbjct: 144 VEYELSE-EGDEPQYLDLPSTATSVNIPD-LLPGRKYIVNVYQISEDGEQSLILSTS 198
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 25.1 bits (55), Expect = 9.0
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 83 NAEIT-YSI-YHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIV 140
N + Y I Y V + R+D + L + Y I+++A + G+
Sbjct: 44 NIVVRGYIIGYGVGSPYAETVRVDSKQRYYSIER-LESSSHYVISLKAFNNAGEGVPLYE 102
Query: 141 EVSVVPGP 148
+
Sbjct: 103 SATTRSIT 110
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 25.2 bits (55), Expect = 9.0
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 116 LIAGEQYSITVQATDTGGKSSQTIVEVSVVPGP 148
L G Y ++VQ+ S +
Sbjct: 68 LEPGRDYEVSVQSLRGPEGSEARGIRARTPTSG 100
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 26.3 bits (57), Expect = 9.3
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 4/96 (4%)
Query: 76 TDNDLGVNAEITYSIYHVSNTGLHKFRI-DPRSGVIETTGKLIAGEQYSITVQATDTGGK 134
+ L S F I D ++ L+ + Y I QA
Sbjct: 631 NASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANG 690
Query: 135 SSQT-IVEVSVVPGPNTRSPV--FQQNTYDVNVSEG 167
++ V+V+ + +Q + V ++
Sbjct: 691 ETKIDCVQVATKGAATPKPVPEPEKQTDHTVKGTKH 726
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 25.1 bits (55), Expect = 9.5
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 8/97 (8%)
Query: 49 NAPRLPMIPPIQIQAGEARRQIVKI--EATDNDLGVNAEIT-YSIYHVSNTGLHKFRIDP 105
++ +P P +Q++ + + Y + G +
Sbjct: 5 SSGPVPATPILQLEECCTHNNSATLSWKQPPLS---TVPADGYILELDDGNGGQFREVYV 61
Query: 106 RSGVIETTGKLIAGEQYSITVQATDTGGKS--SQTIV 140
+ T L Y+ V+A + G S S+T+V
Sbjct: 62 GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLV 98
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 25.9 bits (57), Expect = 9.5
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 71 VKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATD 130
V + D G A++ + + SG K+ G +Y + V +
Sbjct: 41 VSWNLWNGDTGTTAKVLLNGKEAWSGP-----STGSSGT--ANFKVNKGGRYQMQVALCN 93
Query: 131 TGGKSSQTIVEVSVVP 146
G ++ E+ V
Sbjct: 94 ADGCTASDATEIVVAD 109
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 24.7 bits (54), Expect = 9.7
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 82 VNAEIT-YSI-YHVSNTGLHKFRIDPRSGVIETT-GKLIAGEQYSITVQATDTGGKSS 136
+++ Y + Y G+H+ P L G +Y+++V A +S
Sbjct: 25 PQGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQ 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.129 0.355
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,749,444
Number of extensions: 155692
Number of successful extensions: 576
Number of sequences better than 10.0: 1
Number of HSP's gapped: 421
Number of HSP's successfully gapped: 165
Length of query: 195
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 106
Effective length of database: 4,216,824
Effective search space: 446983344
Effective search space used: 446983344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.0 bits)