RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5884
(195 letters)
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 53.2 bits (127), Expect = 3e-10
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 55 MIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIY--HVSNTGLHKFRIDPRSGVIET 112
+IPPI++ E ++ ++ ++ YSI N FRI+ +G +
Sbjct: 3 VIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLV 62
Query: 113 TGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV 144
T L ++Y ++ A G + +E+++
Sbjct: 63 TRPLDREEYDKYVLSSHAVSENGSPVEEPMEITI 96
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 52.0 bits (124), Expect = 8e-10
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 55 MIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSI--YHVSNTGLHKFRIDPRSGVIET 112
+IPPI E + ++ ++ YSI + F I+ +G ++
Sbjct: 6 VIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKV 65
Query: 113 TGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV 144
T L Y++ A + G + + +E+ +
Sbjct: 66 TEPLDRERIATYTLFSHAVSSNGNAVEDPMEILI 99
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 47.1 bits (111), Expect = 4e-08
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 55 MIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIY--HVSNTGLHKFRIDPRSGVIET 112
+IPPI + ++ + N + YS+ F I+P SG +
Sbjct: 5 VIPPINLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSV 64
Query: 113 TGKLIA--GEQYSITVQATDTGGKSSQTIVEVSV 144
T L ++ + A D G + +++ +
Sbjct: 65 TKPLDRELIARFHLRAHAVDINGNQVENPIDIVI 98
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 36.2 bits (82), Expect = 4e-04
Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 16/113 (14%)
Query: 47 NDNAPRLPMIPPIQIQAGE---ARRQIVKIEATDNDLGVNAEITYSIYHVSNT----GLH 99
NDN P E ++ + A D D VS +
Sbjct: 1 NDNRPEFLH-QVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPN 59
Query: 100 KFRIDPRSGVIETTGKLIAGE---QYSITVQATDTGGK-----SSQTIVEVSV 144
F I+ +G I T + E QY++ +QATD G S+ ++V
Sbjct: 60 MFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITV 112
Score = 30.1 bits (66), Expect = 0.066
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 149 NTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASGCAIM 189
N P F ++ +V EG+ + V T+T A+
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALN 41
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 33.9 bits (76), Expect = 0.003
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 4/99 (4%)
Query: 47 NDNAPRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPR 106
NDN P P + + + +D D+ N + K +D +
Sbjct: 1 NDNGPV---PSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSK 57
Query: 107 SGVIET-TGKLIAGEQYSITVQATDTGGKSSQTIVEVSV 144
+ + + YSI V +D T+V +V
Sbjct: 58 GTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATV 96
Score = 27.0 bits (58), Expect = 0.72
Identities = 4/41 (9%), Positives = 9/41 (21%), Gaps = 2/41 (4%)
Query: 11 RDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAP 51
G + V+ + Q + + A
Sbjct: 66 TQQLKKGDYSIYVLLSDAQNNPQLT--VVNATVCSCEGKAI 104
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 33.4 bits (75), Expect = 0.005
Identities = 22/109 (20%), Positives = 34/109 (31%), Gaps = 11/109 (10%)
Query: 47 NDNAPRLPMIP-PIQIQAGEARRQIVKIEATDN-DLGVNAEITYSIYHVSNTGLHKFRID 104
NDNAP + E ++ ++ TD G A V+ G D
Sbjct: 2 NDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 61
Query: 105 PRSGVIETTGKLI----AGEQYSITVQATDTGG-----KSSQTIVEVSV 144
P S T +QY + + + +S V V+V
Sbjct: 62 PESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTV 110
Score = 28.4 bits (62), Expect = 0.25
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 149 NTRSPVFQQNTYDVNVSEGASINSTVATITVS 180
N +P+F TY V E I V ++V+
Sbjct: 2 NDNAPIFDPKTYTALVPENE-IGFEVQRLSVT 32
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 32.3 bits (72), Expect = 0.013
Identities = 3/29 (10%), Positives = 9/29 (31%)
Query: 153 PVFQQNTYDVNVSEGASINSTVATITVSR 181
F ++ Y + + + + S
Sbjct: 11 TGFPEDVYSAVLPKDVHEGQPLLNVKFSN 39
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 32.0 bits (71), Expect = 0.016
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 47 NDNAPRLPMIP-----PIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHK- 100
NDN P G + ++ +A D+ NA I Y+I HK
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 101 -FRIDPRSGVIETTGKLIAGE---QYSITVQATDTGG--KSSQTIVEVSV 144
F ++ +GVI + E Y++ VQA D G S+ ++V
Sbjct: 61 MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 110
Score = 32.0 bits (71), Expect = 0.016
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 149 NTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASGCAIMN 190
N P F Q ++ +V+EGA ++V ++ + N
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN 42
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 31.6 bits (70), Expect = 0.020
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 47 NDNAPRLPMIP-----PIQIQAGEARRQIVKIEATDNDLGVNAEITYSIY--HVSNTGLH 99
NDN P+ +Q G + + DN +N ++YSI +
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 100 KFRIDPRSGVIETTGKLIAGE---QYSITVQATDTGG--KSSQTIVEVSVV 145
F I+ +GVI G + E +Y++TVQATD G S + + +
Sbjct: 62 LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT 112
Score = 29.6 bits (65), Expect = 0.10
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 149 NTRSPVFQQNTYDVNVSEGASINSTVA 175
N P F Q+ + +V EG + V
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVM 28
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 30.7 bits (68), Expect = 0.034
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 152 SPVFQQNTYDVNVSEGASINSTVATITVSRLASGC 186
+P F V+VSE S + ++
Sbjct: 3 APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQ 37
Score = 30.3 bits (67), Expect = 0.051
Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 15/108 (13%)
Query: 48 DNAPRLPMIPPIQIQAGE---ARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRID 104
+ AP ++ E +I+ + A D D +++Y I + ++
Sbjct: 1 NEAPFFVP-AVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPA---RWLTVN 56
Query: 105 PRSGVIETTGKL------IAGEQYSITVQATDTGG--KSSQTIVEVSV 144
+G++ G L + Y++ + TD G + + + V
Sbjct: 57 KDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHV 104
>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 293
Score = 32.0 bits (71), Expect = 0.037
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 25 AREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNA 84
A G+ +S V LT + PR P+ P + + +++ I A +L +
Sbjct: 234 ASRIFGSLSSNYV-LTKYFQGYDLGYPRPPIFPLDDEEERQLIKKVEGIRAKLVELKILK 292
Query: 85 E 85
E
Sbjct: 293 E 293
>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 88
Score = 26.0 bits (56), Expect = 1.3
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 57 PPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKL 116
P I + + T V++ Y G S KL
Sbjct: 3 SPKGISFSDITENSATVSWTPPRSRVDSYRVS--YVPITGGTPNVVTVDGSKTRTKLVKL 60
Query: 117 IAGEQYSITVQATDTGGKS 135
+ G Y++ + + +S
Sbjct: 61 VPGVDYNVNIISVKGFEES 79
>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 87
Score = 25.6 bits (55), Expect = 1.8
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 83 NAEITYSIYHVSNTGLHKFRIDPRSGVIE-TTGKLIAGEQYSITVQATDTGGKSSQTIVE 141
A+ + K ++ L AG +Y+I++ A KS T ++
Sbjct: 24 VAKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIK 83
Query: 142 VSVV 145
S V
Sbjct: 84 GSTV 87
>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 302
Score = 26.7 bits (57), Expect = 2.1
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 71 VKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRS 107
+E T E++ + S L K ++ R+
Sbjct: 272 AYVEITPK------EMSVTYIEASGKSLFKTKLPRRA 302
>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 24.8 bits (53), Expect = 3.9
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 1/87 (1%)
Query: 57 PPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKL 116
P + + +KI V+ D E G L
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQG-L 62
Query: 117 IAGEQYSITVQATDTGGKSSQTIVEVS 143
G +Y+++V A +S I S
Sbjct: 63 RPGSEYTVSVVALHDDMESQPLIGTQS 89
>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 106
Score = 24.8 bits (53), Expect = 3.9
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 57 PPIQIQAGEARRQIVKI--EATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTG 114
P + E +K+ + G+ S + T P +
Sbjct: 13 PVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVT 72
Query: 115 KLIAGEQYSITVQATDTGGKS--SQTIVEVSVVP 146
L A Y+I V A + G+ S + + V P
Sbjct: 73 GLTALTTYTIEVAAMTSKGQGQVSASTISSGVPP 106
>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1.
{Bacillus circulans [TaxId: 1397]}
Length = 88
Score = 24.4 bits (52), Expect = 4.2
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 112 TTGKLIAGEQYSITVQATDTGGKSSQTIVEVSV 144
T L A Y+ TV+A D G S VSV
Sbjct: 54 TISGLAADTSYTFTVKAKDAAGNVSAASNAVSV 86
>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 103
Score = 24.6 bits (53), Expect = 4.2
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 11/103 (10%)
Query: 50 APRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGL-HKFRIDPRSG 108
P + IP G + R + + + + L DP S
Sbjct: 2 VPTVVGIPDGTAVVGRSFRVSIPTDLIASS-----GEIIKVSAAGKEALPSWLHWDPHSH 56
Query: 109 VIETTGKLIAGEQYSITVQATDTGGKSSQ-----TIVEVSVVP 146
++E + I+V A G S ++ + V P
Sbjct: 57 ILEGLPLDTDKGVHYISVSAARLGANGSHVPQTSSVFSIEVYP 99
>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 24.5 bits (52), Expect = 4.4
Identities = 9/87 (10%), Positives = 21/87 (24%), Gaps = 1/87 (1%)
Query: 57 PPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKL 116
P QI+ + I ++ G + G L
Sbjct: 4 APSQIEVKDVTDTTALITWFKPLAEIDGIELT-YGIKDVPGDRTTIDLTEDENQYSIGNL 62
Query: 117 IAGEQYSITVQATDTGGKSSQTIVEVS 143
+Y +++ + S+ +
Sbjct: 63 KPDTEYEVSLISRRGDMSSNPAKETFT 89
>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing
protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 107
Score = 24.9 bits (53), Expect = 4.5
Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 2/88 (2%)
Query: 50 APRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGV 109
P P IP G+ KI A I + ++ SG
Sbjct: 7 CPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGA 66
Query: 110 IE--TTGKLIAGEQYSITVQATDTGGKS 135
+L G Y + V GG+S
Sbjct: 67 TREHLCDRLNPGCFYRLRVYCISDGGQS 94
>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 24.5 bits (52), Expect = 4.5
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Query: 57 PPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKL 116
PP + + +A + I + +N R T L
Sbjct: 4 PPRRARVTDATETTITISWRTKTETITGFQVD--AVPANGQTPIQRTIKPDVRSYTITGL 61
Query: 117 IAGEQYSITVQATDTGGKSSQTIVEVS 143
G Y I + + +SS +++ S
Sbjct: 62 QPGTDYKIYLYTLNDNARSSPVVIDAS 88
>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 24.4 bits (52), Expect = 4.8
Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 6/97 (6%)
Query: 54 PMIPPIQIQAGEARRQI---VKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVI 110
P+ PP + V E + IT + + + +
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSC 60
Query: 111 ETTGKLIAGEQYSITVQATDTGGKSSQTIVEVSVVPG 147
L G +Y+++V +S + +++P
Sbjct: 61 TFDN-LSPGLEYNVSVYTVKDDKESVP--ISDTIIPA 94
>d1ihma_ b.121.4.3 (A:) Calicivirus capsid protein {Norwalk virus
[TaxId: 11983]}
Length = 492
Score = 25.6 bits (56), Expect = 5.3
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 10/72 (13%)
Query: 79 DLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQT 138
D+ I + V N H + + T +L+ T T G S
Sbjct: 123 DVRTLDPIEVPLEDVRNVLFH------NNDRNQQTMRLVC---MLYTPLRTGGGTGDSFV 173
Query: 139 I-VEVSVVPGPN 149
+ V P P+
Sbjct: 174 VAGRVMTCPSPD 185
>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 24.3 bits (52), Expect = 6.4
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 57 PPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKL 116
P ++A A + + G Y +Y++ + +D S G L
Sbjct: 13 PAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTING-L 71
Query: 117 IAGEQYSITVQATDTGGKS 135
+YS V A + G
Sbjct: 72 KKYTEYSFRVVAYNKHGPG 90
>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 119
Score = 24.1 bits (51), Expect = 7.8
Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 4/86 (4%)
Query: 54 PMIPPIQIQAGEARRQIVKI----EATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGV 109
P P + + + I A G S + + +
Sbjct: 11 PSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQL 70
Query: 110 IETTGKLIAGEQYSITVQATDTGGKS 135
+ L G +Y+ V A G
Sbjct: 71 SQLIEGLDRGTEYNFRVAALTINGTG 96
>d1xcra1 d.290.1.2 (A:3-315) Hypothetical protein PTD012 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 313
Score = 24.7 bits (54), Expect = 7.8
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 140 VEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATI 177
V+VSVV P+ F +G + +A +
Sbjct: 29 VQVSVVDCPDLTKEPFTF------PVKGICGKTRIAEV 60
>d1tg7a4 b.71.1.5 (A:395-569) Beta-galactosidase LacA, domain 2
{Penicillium sp. [TaxId: 5081]}
Length = 175
Score = 24.4 bits (53), Expect = 9.2
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 14 PNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARRQIVKI 73
N F VI + ASV LTV + N P+L + + ++ KI
Sbjct: 29 SNSSASSFFVIRHSDYSSQASVEYKLTVPTSAGNLTIPQLG--GSLTLSGRDS-----KI 81
Query: 74 EATDNDLGVNAEITYS 89
TD D+ I YS
Sbjct: 82 HVTDYDVA-GTNILYS 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.129 0.355
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 643,905
Number of extensions: 27608
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 56
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.5 bits)