RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5886
(184 letters)
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 130 bits (329), Expect = 1e-38
Identities = 44/161 (27%), Positives = 65/161 (40%), Gaps = 25/161 (15%)
Query: 28 ELGVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT---------------EH 72
+G ++ Q+ A D D+ + + + +F ++P T E
Sbjct: 24 PVGSSVTQLLARDMDNDP---LVFGVSGEEAS--RFFAVEPDTGVVWLRQPLDRETKSEF 78
Query: 73 QGPIQ--DEGGLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD-GLAVGRVHATDAD 129
D T VNI+V D+ND P F + PY +PE G + V+ATD D
Sbjct: 79 TVEFSVSD-HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPD 137
Query: 130 EGQNAVVYYSVPEDIP-FVVDANTGDIRTNKALDYEKQQLY 169
G V YS P F +D+ G + + LDYE Q Y
Sbjct: 138 LGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAY 178
Score = 66.9 bits (164), Expect = 3e-14
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 96 NDKNPEFQSLPYE--FSVPEGQD-GLAVGRVHATDADEGQNAVVYYSVPEDI--PFVVDA 150
++ P F + ++ + E G +V ++ A D D +V+ E+ F V+
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDP--LVFGVSGEEASRFFAVEP 59
Query: 151 NTGDIRTNKALDYEKQQLY 169
+TG + + LD E + +
Sbjct: 60 DTGVVWLRQPLDRETKSEF 78
Score = 55.7 bits (135), Expect = 4e-10
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 24/90 (26%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT---------------EHQG 74
G + V ATD D G G V Y + +F +D A +Q
Sbjct: 125 GTPIFIVNATDPDLGAGGSVLYSFQPPS----PFFAIDSARGIVTVIQELDYEVTQAYQL 180
Query: 75 PIQ--DEGG---LSSTATVNIRVTDINDKN 99
+ D+ LS+ A + I +TD+ D +
Sbjct: 181 TVNATDQDKTRPLSTLANLAIIITDMQDMD 210
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 121 bits (306), Expect = 4e-34
Identities = 57/173 (32%), Positives = 80/173 (46%), Gaps = 37/173 (21%)
Query: 30 GVTLMQVKATDKDSGKFGL---VEYRLLDNNTDAASYFNLDPAT---------------- 70
G ++ V ATD D +G + Y +L+ YF+++P T
Sbjct: 122 GTSVTNVTATDADDPVYGNSAKLVYSILEGQ----PYFSIEPETAIIKTALPNMDREAKE 177
Query: 71 EHQGPIQ--DEGG----LSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD-GLAVGRV 123
E+ IQ D GG LS T T+ + +TD+ND P+F Y FSVPE G A+GRV
Sbjct: 178 EYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRV 237
Query: 124 HATDADEGQNAVVYYSVPE-------DIPFVVDANTGDIRTNKALDYEKQQLY 169
A D D G+NA Y + + +I A G IR K LD+E ++ Y
Sbjct: 238 KANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSY 290
Score = 106 bits (266), Expect = 3e-28
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 35/169 (20%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPATEHQGPI------------- 76
L+ TD D G ++Y L + + F ++ T G I
Sbjct: 17 EPILVGRLHTDLDPGS-KKIKYILSGDGAG--TIFQINDIT---GDIHAIKRLDREEKAE 70
Query: 77 -------QDEGG---LSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD-GLAVGRVHA 125
D L + I+V DIND PEF + PY +VPE G +V V A
Sbjct: 71 YTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTA 130
Query: 126 TDADE---GQNAVVYYSVPEDIP-FVVDANTGDIRT-NKALDYEKQQLY 169
TDAD+ G +A + YS+ E P F ++ T I+T +D E ++ Y
Sbjct: 131 TDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEY 179
Score = 56.5 bits (137), Expect = 4e-10
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 106 PYEFSVPEGQD-GLAVGRVHATDADEGQNAVVYYSVPEDIP--FVVDANTGDIRTNKALD 162
F + E + TD D G + Y + F ++ TGDI K LD
Sbjct: 5 NQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLD 64
Query: 163 YEKQQLYLERVF 174
E++ Y
Sbjct: 65 REEKAEYTLTAQ 76
Score = 39.2 bits (92), Expect = 3e-04
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 30/92 (32%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPATEHQGPI------------- 76
G + +VKA D+D G+ Y ++D + A D + G I
Sbjct: 231 GTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQ-DGVIRLRKPLDFETKKS 289
Query: 77 -------QDEGG---------LSSTATVNIRV 92
+ TATV I V
Sbjct: 290 YTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 117 bits (294), Expect = 2e-33
Identities = 45/172 (26%), Positives = 63/172 (36%), Gaps = 32/172 (18%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTD--AASYFNLDPAT-----------EHQ--- 73
G ++ D K + Y + D F ++P + E
Sbjct: 15 GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARF 74
Query: 74 ---GPIQDEGG--LSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD-GLAVGRVHATD 127
D G + + + I V D+ND PEF + SVPEG G V V A D
Sbjct: 75 HLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAID 134
Query: 128 ADE--GQNAVVYYSVPEDIP-------FVVDANTGDIRT-NKALDYEKQQLY 169
AD+ N ++ Y + P F ++ TGDI T LD EK Q Y
Sbjct: 135 ADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQY 186
Score = 71.6 bits (176), Expect = 6e-16
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 106 PYEFSVPEGQDGLAVGRVHATDADEGQNAVVYYSV-------PEDIPFVVDANTGDIRTN 158
++PE G + +D +N + YSV P F+++ +G +
Sbjct: 4 IPPINLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVT 63
Query: 159 KALDYEKQQLYLERVF 174
K LD E + R
Sbjct: 64 KPLDRELIARFHLRAH 79
Score = 48.5 bits (116), Expect = 1e-07
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 27/92 (29%)
Query: 30 GVTLMQVKATDKD--SGKFGLVEYRLLDNN--TDAASYFNLDPAT------------EHQ 73
G +M V A D D + G++ YR+L T + + F ++ T E
Sbjct: 124 GTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKV 183
Query: 74 -----------GPIQDEGGLSSTATVNIRVTD 94
GLS+TAT I VTD
Sbjct: 184 QQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 114 bits (288), Expect = 2e-32
Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 29/166 (17%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT-----------EHQ----- 73
L+ +D DSG G ++Y L + F +D + E +
Sbjct: 18 DPVLVGRLHSDIDSGD-GNIKYILSGEGAG--TIFVIDDKSGNIHATKTLDREERAQYTL 74
Query: 74 -GPIQDEGG---LSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD-GLAVGRVHATDA 128
D L + ++V DIND PEF Y +VPE + G +V +V A+DA
Sbjct: 75 MAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDA 134
Query: 129 DE---GQNAVVYYSVPEDIP-FVVDANTGDIRTN-KALDYEKQQLY 169
D+ G +A + YS+ E P F V+A TG IRT +D E ++ Y
Sbjct: 135 DDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEY 180
Score = 58.1 bits (141), Expect = 5e-11
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 29/97 (29%)
Query: 30 GVTLMQVKATDKDSGKFGL---VEYRLLDNNTDAASYFNLDPAT---------------- 70
G +++QV A+D D +G + Y +L+ YF+++ T
Sbjct: 123 GTSVIQVTASDADDPTYGNSAKLVYSILEGQ----PYFSVEAQTGIIRTALPNMDREAKE 178
Query: 71 EHQGPIQ------DEGGLSSTATVNIRVTDINDKNPE 101
E+ IQ GGLS T V I +TD + +
Sbjct: 179 EYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215
Score = 57.3 bits (139), Expect = 1e-10
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 106 PYEFSVPEGQD-GLAVGRVHATDADEGQNAVVYYSVPEDIP--FVVDANTGDIRTNKALD 162
F + E + +D D G + Y E FV+D +G+I K LD
Sbjct: 6 NQFFVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLD 65
Query: 163 YEKQQLYLERVF 174
E++ Y
Sbjct: 66 REERAQYTLMAQ 77
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 113 bits (285), Expect = 5e-32
Identities = 45/175 (25%), Positives = 61/175 (34%), Gaps = 33/175 (18%)
Query: 28 ELGVTLMQVKATDKDSGKFGLVEYRLLDNNTD--AASYFNLDPAT-----------EHQ- 73
E G + + K V Y + D F ++ T E
Sbjct: 13 EKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIA 72
Query: 74 -----GPIQDEGG--LSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD-GLAVGRVHA 125
G + + I VTD ND PEF +E SV EG G +V +V A
Sbjct: 73 KYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSA 132
Query: 126 TDADEG---QNAVVYYSVPEDIP-------FVVDANTGDIRT-NKALDYEKQQLY 169
TDAD+ NA + Y++ P F V+ +TG I LD E Y
Sbjct: 133 TDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTY 187
Score = 71.6 bits (176), Expect = 5e-16
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 106 PYEFSVPEGQDGLAVGRVHATDADEGQNAVVYYSV-------PEDIPFVVDANTGDIRTN 158
S PE + G + ++ + V+YS+ P F+++ TG ++
Sbjct: 4 IAAISCPENEKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63
Query: 159 KALDYEKQQLY 169
+ LD E Y
Sbjct: 64 QPLDREAIAKY 74
Score = 49.6 bits (119), Expect = 6e-08
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 31/93 (33%)
Query: 30 GVTLMQVKATDKDSGKFGL---VEYRLLDNNTD--AASYFNLDPATEHQGPI-------- 76
G ++M+V ATD D + Y ++ + + + F ++ T G I
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDT---GVISVLTSGLD 180
Query: 77 -------------QDEGG--LSSTATVNIRVTD 94
D G LS+TA I V D
Sbjct: 181 RESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 113 bits (285), Expect = 5e-32
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 29/166 (17%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT-----------EHQ----- 73
+ +D+D G G ++Y L + F ++ T E +
Sbjct: 17 DYQYVGKLHSDQDRGD-GSLKYILSGDGAG--DLFIINENTGDIQATKRLDREEKPVYIL 73
Query: 74 -GPIQDEGG---LSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD-GLAVGRVHATDA 128
+ + + I++ DIND P F Y +VPE D G V +V ATDA
Sbjct: 74 RAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDA 133
Query: 129 DE---GQNAVVYYSVPEDIP-FVVDANTGDIRTNKA-LDYEKQQLY 169
D+ G +A V YS+ + P F V++ TG I+T +D E ++ Y
Sbjct: 134 DDPTYGNSAKVVYSILQGQPYFSVESETGIIKTALLNMDRENREQY 179
Score = 48.1 bits (115), Expect = 2e-07
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 29/91 (31%)
Query: 29 LGVTLMQVKATDKDSGKFGL---VEYRLLDNNTDAASYFNLDPAT--------------- 70
+G ++QV ATD D +G V Y +L YF+++ T
Sbjct: 121 VGTFVVQVTATDADDPTYGNSAKVVYSILQGQ----PYFSVESETGIIKTALLNMDRENR 176
Query: 71 -EHQGPIQ--DEGG----LSSTATVNIRVTD 94
++Q IQ D GG LS T TVNI +TD
Sbjct: 177 EQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 112 bits (281), Expect = 1e-31
Identities = 37/166 (22%), Positives = 60/166 (36%), Gaps = 31/166 (18%)
Query: 29 LGVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT-----------EHQ---- 73
L + ++ ++ + Y + + + + F + E +
Sbjct: 17 LPHHVGKLTSSVGN----KNAMYIIEGESAN--TIFKVQGYDGDIYAFERLDREKKAEYE 70
Query: 74 --GPIQDEGG---LSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD-GLAVGRVHATD 127
I D L + I+V+DIND P F + SVPE G +V +V A D
Sbjct: 71 LTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAED 130
Query: 128 ADE---GQNAVVYYSVPEDIP-FVVDANTGDIRTNKALDYEKQQLY 169
AD+ +A V Y + + F VD + LD E Q Y
Sbjct: 131 ADDPTVAGHATVTYQIIKGNEYFTVDDSGVIFTARADLDRESQSAY 176
Score = 54.6 bits (132), Expect = 1e-09
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 109 FSVPEGQD---GLAVGRVHATDADEGQNAVVYYSV---PEDIPFVVDANTGDIRTNKALD 162
+ E D VG++ ++ N Y + + F V GDI + LD
Sbjct: 7 MHIREEIDSPLPHHVGKLTSSVG----NKNAMYIIEGESANTIFKVQGYDGDIYAFERLD 62
Query: 163 YEKQQLY 169
EK+ Y
Sbjct: 63 REKKAEY 69
Score = 45.8 bits (109), Expect = 1e-06
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 27/89 (30%)
Query: 29 LGVTLMQVKATDKDSGKFGL---VEYRLLDNNTDAASYFNLDPAT--------------- 70
LG ++ +V A D D V Y+++ N YF +D +
Sbjct: 119 LGTSVTKVTAEDADDPTVAGHATVTYQIIKGN----EYFTVDDSGVIFTARADLDRESQS 174
Query: 71 EHQGPIQ--DEGG---LSSTATVNIRVTD 94
++ ++ D G SSTATV IR+TD
Sbjct: 175 AYEIIVKAKDALGLTGESSTATVIIRLTD 203
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 118 bits (298), Expect = 1e-31
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 33/173 (19%)
Query: 30 GVTLMQVKATDKDSGKFGL---VEYRLLDNN--TDAASYFNLDPAT-------------- 70
G +M V ATD+D L + Y +L + + F ++ T
Sbjct: 279 GTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREK 338
Query: 71 --EHQGPIQ----DEGGLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQDGLAVGRVH 124
E+ +Q + GLS I++TD ND P F Y VPE + G V R+
Sbjct: 339 FPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLS 398
Query: 125 ATDADEGQNA--VVYYSV--PEDIPFVV----DANTGDIRTNKALDYEKQQLY 169
TD D Y + E F + ++N G + T K LD+E ++ Y
Sbjct: 399 VTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQY 451
Score = 103 bits (257), Expect = 5e-26
Identities = 41/169 (24%), Positives = 58/169 (34%), Gaps = 33/169 (19%)
Query: 34 MQVKATDKDSGKFGLVEYRLLDNNTD--AASYFNLDPAT-----------EHQ------G 74
++ + +F V Y + D F ++ T E
Sbjct: 174 KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSS 233
Query: 75 PIQDEGG--LSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD-GLAVGRVHATDADE- 130
E G + + I V D ND P+F + SV EG G V V ATD D+
Sbjct: 234 HAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDN 293
Query: 131 --GQNAVVYYSVPEDIP-------FVVDANTGDIRT-NKALDYEKQQLY 169
N V+ YS+ + P F ++ TG I LD EK Y
Sbjct: 294 IDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEY 342
Score = 102 bits (256), Expect = 6e-26
Identities = 35/179 (19%), Positives = 57/179 (31%), Gaps = 41/179 (22%)
Query: 28 ELGVTLMQVKATDKDSGKFG--LVEYRLLDN-------NTD-----------------AA 61
E+G + ++ TD D Y++ N TD
Sbjct: 389 EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELR 448
Query: 62 SYFNL-----DPATEHQGPIQDEGGLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD 116
+ L + +STATV + V D+N+ P F V E
Sbjct: 449 KQYVLQITVENAEPFSVPL------PTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLS 501
Query: 117 -GLAVGRVHATDADEGQNAVVYYSVPEDI--PFVVDANTGDIRTNKALDYEKQQLYLER 172
G + + A D D+ Q + Y + D V+ + G + N LD E + +
Sbjct: 502 RGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNT 560
Score = 93.8 bits (233), Expect = 8e-23
Identities = 25/167 (14%), Positives = 47/167 (28%), Gaps = 34/167 (20%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT-----------EHQGPI-- 76
G ++ + A D D + + Y + D A + ++ E +
Sbjct: 503 GEKIISLVAQDPDKQQIQKLSYFIG---NDPARWLTVNKDNGIVTGNGNLDRESEYVKNN 559
Query: 77 --------QDEG--GLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQDGLAVGRVHAT 126
D+G + T T+ + V D+ND P + + + +
Sbjct: 560 TYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPE----PQVLTIS 615
Query: 127 DADEGQNAVVYY----SVPEDIPFVVDANTGDIRTNKALDYEKQQLY 169
DAD N Y + + G K+ Y
Sbjct: 616 DADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDY 662
Score = 80.7 bits (199), Expect = 3e-18
Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 36/197 (18%)
Query: 14 SDSLFYGAMARDKHELGVTLMQVKATDKDSGKFGLVEYR----LLDNNTDAASYFNLDPA 69
S + + ++ R + E G L +V +D + K GL + + + ++
Sbjct: 38 SSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVGDSRFRVLPDGTVLVKRHVKLH 97
Query: 70 TEH--------------------QGPIQDEGGLSSTATVNIRVTDINDKNPEFQS----- 104
+ G + + + + V + + +
Sbjct: 98 KDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDW 157
Query: 105 LPYEFSVPEGQDGLAVGRVHATDADEGQNAVVYYSV-------PEDIPFVVDANTGDIRT 157
+ V E + G R+ +++ + VYYS+ P F ++ TG +
Sbjct: 158 VIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLV 217
Query: 158 NKALDYEKQQLYLERVF 174
+ LD E+ Y+
Sbjct: 218 TRPLDREEYDKYVLSSH 234
Score = 79.9 bits (197), Expect = 5e-18
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 11/110 (10%)
Query: 68 PATEHQGPIQDEGGLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEG--QDGLAVGRVHA 125
A+ G L V D++ P F S Y FSV + G +G+V+
Sbjct: 8 NASVWLC-----GLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNF 62
Query: 126 TDADEGQNAVVYYSVPEDIPFVVDANTGDIRTNKALDYEKQQLYLERVFL 175
+D ++ + F V G + + + K + +
Sbjct: 63 SDCTTRKHGLYDVGDSR---FRVL-PDGTVLVKRHVKLHKDTKFTISTWD 108
Score = 42.2 bits (99), Expect = 4e-05
Identities = 10/97 (10%), Positives = 18/97 (18%), Gaps = 16/97 (16%)
Query: 34 MQVKATDKDSGKFGL-VEYRLLDNNTD-------------AASYFNLDPATEHQGPI--Q 77
+ +D D + L + S ++ +
Sbjct: 610 QVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLS 669
Query: 78 DEGGLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEG 114
D VN V K + Q
Sbjct: 670 DAQNNPQLTVVNATVCSCEGKAIKCQEKLVGGFDLPI 706
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 117 bits (296), Expect = 2e-31
Identities = 46/178 (25%), Positives = 67/178 (37%), Gaps = 39/178 (21%)
Query: 28 ELGVTLMQVKATDKDSGKFGL---VEYRLLDNNTDAAS--YFNLDPATEHQGPI------ 76
G ++M+V ATD D + Y ++ + + F ++ T G I
Sbjct: 122 VPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDT---GVISVLTSG 178
Query: 77 -----------------QDEGGLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQDGLA 119
GLS+TA I V DIND P F Y+ VPE +
Sbjct: 179 LDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNAR 238
Query: 120 VGRVHATDADEGQNA--VVYYSV---PEDIPFVV---DANTGDIRTNKALDYEKQQLY 169
+ + TD D Y+V P+ VV N G ++T K LD+E +Q Y
Sbjct: 239 IATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQY 296
Score = 108 bits (273), Expect = 3e-28
Identities = 45/175 (25%), Positives = 61/175 (34%), Gaps = 33/175 (18%)
Query: 28 ELGVTLMQVKATDKDSGKFGLVEYRLLDNNTD--AASYFNLDPAT-----------EHQ- 73
E G + + K V Y + D F ++ T E
Sbjct: 13 EKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIA 72
Query: 74 -----GPIQDEGG--LSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD-GLAVGRVHA 125
G + + I VTD ND PEF +E SV EG G +V +V A
Sbjct: 73 KYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSA 132
Query: 126 TDADEG---QNAVVYYSVPEDIP-------FVVDANTGDIRT-NKALDYEKQQLY 169
TDAD+ NA + Y++ P F V+ +TG I LD E Y
Sbjct: 133 TDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTY 187
Score = 108 bits (271), Expect = 5e-28
Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 41/188 (21%)
Query: 28 ELGVTLMQVKATDKDSGKFG--LVEYRLLDNNTD------------------------AA 61
E+ + +K TD D+ Y ++++ A
Sbjct: 234 EVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAK 293
Query: 62 SYFNL-----DPATEHQGPIQDEGGLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD 116
+ L + + STATV + V D+N+ P F VPE
Sbjct: 294 QQYILHVRVENEEPFEGSL------VPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFG 346
Query: 117 -GLAVGRVHATDADEGQNAVVYYSVPEDI--PFVVDANTGDIRTNKALDYEKQQLYLERV 173
G + A + D + + Y + D ++ TG I T +D E +
Sbjct: 347 VGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNST 406
Query: 174 FLISKFAT 181
++ AT
Sbjct: 407 YVALIIAT 414
Score = 92.4 bits (230), Expect = 2e-22
Identities = 23/169 (13%), Positives = 47/169 (27%), Gaps = 36/169 (21%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT------------------- 70
G + A + D+ + YR+ D A++ ++P T
Sbjct: 348 GQEITSYTAREPDTFMDQKITYRIWR---DTANWLEINPETGAIFTRAEMDREDAEHVKN 404
Query: 71 -EHQGPIQ--DEGG--LSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQDGLAVGRVHA 125
+ I D+G + T T+ + + D+ND P + +F +
Sbjct: 405 STYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNP----QPHIITI 460
Query: 126 TDADEGQNA-VVYYSVPEDIP----FVVDANTGDIRTNKALDYEKQQLY 169
D D N + + + + + Y
Sbjct: 461 LDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEY 509
Score = 64.3 bits (157), Expect = 1e-12
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 106 PYEFSVPEGQDGLAVGRVHATDADEGQNAVVYYSV-------PEDIPFVVDANTGDIRTN 158
S PE + G + ++ + V+YS+ P F+++ TG ++
Sbjct: 4 IPPISCPENEKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63
Query: 159 KALDYEKQQLY 169
+ LD E Y
Sbjct: 64 QPLDREAIAKY 74
Score = 49.6 bits (119), Expect = 1e-07
Identities = 8/89 (8%), Positives = 17/89 (19%), Gaps = 17/89 (19%)
Query: 36 VKATDKDSGKFG-LVEYRLLDNNTD--------------AASYFNLDPATEHQGPI--QD 78
+ D D L + E++ + D
Sbjct: 458 ITILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLAD 517
Query: 79 EGGLSSTATVNIRVTDINDKNPEFQSLPY 107
T+++ V D +
Sbjct: 518 NQNKDQVTTLDVHVCDCEGTVNNCMKAHH 546
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 117 bits (294), Expect = 4e-31
Identities = 45/176 (25%), Positives = 66/176 (37%), Gaps = 39/176 (22%)
Query: 30 GVTLMQVKATDKDSGKFGL---VEYRLLDNN--TDAASYFNLDPATEHQGPI-------- 76
G +M V ATD+D L + Y +L + + F ++ T G I
Sbjct: 130 GTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRET---GVISLIGTGLD 186
Query: 77 ---------------QDEGGLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQDGLAVG 121
+ GLS I++TD ND P F Y VPE + G V
Sbjct: 187 REKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQ 246
Query: 122 RVHATDADEGQNA--VVYYSV--PEDIPFVV----DANTGDIRTNKALDYEKQQLY 169
R+ TD D Y + E F + ++N G + T K LD+E ++ Y
Sbjct: 247 RLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQY 302
Score = 104 bits (262), Expect = 1e-26
Identities = 41/169 (24%), Positives = 58/169 (34%), Gaps = 33/169 (19%)
Query: 34 MQVKATDKDSGKFGLVEYRLLDNNTDAAS--YFNLDPAT-----------EHQ------G 74
++ + +F V Y + D F ++ T E
Sbjct: 25 KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSS 84
Query: 75 PIQDEGG--LSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD-GLAVGRVHATDADE- 130
E G + + I V D ND P+F + SV EG G V V ATD D+
Sbjct: 85 HAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDN 144
Query: 131 --GQNAVVYYSVPEDIP-------FVVDANTGDIRT-NKALDYEKQQLY 169
N V+ YS+ + P F ++ TG I LD EK Y
Sbjct: 145 IDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEY 193
Score = 101 bits (254), Expect = 1e-25
Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 41/171 (23%)
Query: 28 ELGVTLMQVKATDKDSGKFG--LVEYRLLDN-------NTD-----------------AA 61
E+G + ++ TD D Y++ N TD
Sbjct: 240 EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELR 299
Query: 62 SYFNL-----DPATEHQGPIQDEGGLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD 116
+ L + +STATV + V D+N+ P F V E
Sbjct: 300 KQYVLQITVENAEPFSVPL------PTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLS 352
Query: 117 -GLAVGRVHATDADEGQNAVVYYSVPEDI--PFVVDANTGDIRTNKALDYE 164
G + + A D D+ Q + Y + D V+ + G + N LD E
Sbjct: 353 RGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRE 403
Score = 96.2 bits (240), Expect = 8e-24
Identities = 24/167 (14%), Positives = 47/167 (28%), Gaps = 34/167 (20%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT------------------- 70
G ++ + A D D + + Y + D A + ++
Sbjct: 354 GEKIISLVAQDPDKQQIQKLSYFIG---NDPARWLTVNKDNGIVTGNGNLDRESEYVKNN 410
Query: 71 EHQGPIQ--DEG--GLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQDGLAVGRVHAT 126
+ + D+G + T T+ + V D+ND P + + + +
Sbjct: 411 TYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPE----PQVLTIS 466
Query: 127 DADEGQNAVVYY----SVPEDIPFVVDANTGDIRTNKALDYEKQQLY 169
DAD N Y + + G K+ Y
Sbjct: 467 DADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDY 513
Score = 58.5 bits (142), Expect = 1e-10
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 100 PEFQSLPYEFSVPEGQDGLAVGRVHATDADEGQNAVVYYSV-------PEDIPFVVDANT 152
++ P V E + G R+ +++ + VYYS+ P F ++ T
Sbjct: 6 HDWVIPPI--KVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWET 63
Query: 153 GDIRTNKALDYEKQQLY 169
G + + LD E+ Y
Sbjct: 64 GWMLVTRPLDREEYDKY 80
Score = 42.3 bits (100), Expect = 3e-05
Identities = 10/85 (11%), Positives = 18/85 (21%), Gaps = 16/85 (18%)
Query: 35 QVKATDKDSGKFGLV-EYRLLDNNTD-------------AASYFNLDPATEHQGPI--QD 78
+ +D D + L + S ++ + D
Sbjct: 462 VLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSD 521
Query: 79 EGGLSSTATVNIRVTDINDKNPEFQ 103
VN V K + Q
Sbjct: 522 AQNNPQLTVVNATVCSCEGKAIKCQ 546
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 110 bits (278), Expect = 7e-31
Identities = 41/171 (23%), Positives = 63/171 (36%), Gaps = 34/171 (19%)
Query: 29 LGVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT-----------EHQ---- 73
+ +V +D+ G + + +D + F ++ T E
Sbjct: 18 FPRDVGKVVDSDRPEGSKFRLTGKGVDQDPK--GTFRINENTGSVSVTRTLDRETIATYQ 75
Query: 74 --GPIQDEGG--LSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD-GLAVGRVHATDA 128
D G L + + V D ND P F+ PY V EG G V R+ A DA
Sbjct: 76 LYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDA 135
Query: 129 DE--GQNAVVYYSVPEDIP-------FVVDANTGDIRT---NKALDYEKQQ 167
D+ NA++ Y++ + P F +D GDI T LD E +
Sbjct: 136 DDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLE 186
Score = 62.0 bits (151), Expect = 2e-12
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 109 FSVPEGQD---GLAVGRVHATDADEGQNAVVYYSVPEDIP---FVVDANTGDIRTNKALD 162
+PE Q VG+V +D EG + + P F ++ NTG + + LD
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 163 YEKQQLY 169
E Y
Sbjct: 68 RETIATY 74
Score = 46.6 bits (111), Expect = 7e-07
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 30/95 (31%)
Query: 30 GVTLMQVKATDKD--SGKFGLVEYRLLDNNTDAA--SYFNLDPAT--------------- 70
G T+M++ A D D + L+ Y + D + F +DP
Sbjct: 124 GTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRE 183
Query: 71 -----EHQGPIQ--DEGG----LSSTATVNIRVTD 94
+++ I+ D G L+ TAT I + D
Sbjct: 184 TLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 112 bits (281), Expect = 2e-30
Identities = 27/171 (15%), Positives = 46/171 (26%), Gaps = 35/171 (20%)
Query: 34 MQVKATDKDSGKFGLVEYRLLDNNT------DAASYFNLDPAT----------------- 70
+++ T+ D G ++L + +
Sbjct: 7 KRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPE 66
Query: 71 --------EHQGPIQDEGGLSSTATVNIRVTDINDKNPEF--QSLPYEFSVPEGQD-GLA 119
+ V I V D+ND+ P F + LP + V
Sbjct: 67 KTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTP 126
Query: 120 VGRVHATDADEGQNAVVYYSVP-EDIPFVVDANTGDIRTNKALDYEKQQLY 169
V + A D D N + F VD +G +RT ++ Y
Sbjct: 127 VFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEY 177
Score = 99.4 bits (248), Expect = 1e-25
Identities = 25/166 (15%), Positives = 54/166 (32%), Gaps = 36/166 (21%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT-----------EHQ----- 73
+ ++A D D+ + Y ++ + T F +D + +
Sbjct: 124 NTPVFTLQARDPDTDHN--IHYFIVRDRTG--GRFEVDERSGVVRTRGTDLFQLDMEYVL 179
Query: 74 -------GPIQDEGGLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD-GLAVGRVHA 125
D+ ST + + + P+F YE +PE Q + + A
Sbjct: 180 YVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKA 238
Query: 126 TDADEGQNAVVYYSV----PEDIPFVVDANTGDIRTNKALDYEKQQ 167
+ + Y++ F + +G ++ K LD+E +
Sbjct: 239 KSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLR 281
Score = 56.2 bits (136), Expect = 5e-10
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 11/68 (16%)
Query: 120 VGRVHATDADEGQNAVVYYSVPEDI-----------PFVVDANTGDIRTNKALDYEKQQL 168
R+ T+AD + + ++ P+V G +R K DYE+
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65
Query: 169 YLERVFLI 176
F +
Sbjct: 66 EKTIDFWV 73
Score = 52.4 bits (126), Expect = 1e-08
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 25/90 (27%)
Query: 29 LGVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT------------------ 70
++ +KA + + Y L A FN+ P +
Sbjct: 229 KDSDIISIKAKSFADRE---IRYTL-KAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH 284
Query: 71 EHQGPIQ---DEGGLSSTATVNIRVTDIND 97
+ + D GG S++ + IRVTD+ND
Sbjct: 285 VYSLIVTATEDSGGFSTSVDLTIRVTDVND 314
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 110 bits (277), Expect = 9e-29
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 36/178 (20%)
Query: 28 ELGVTLMQVKATDKD--SGKFGLVEYRLLDNN--TDAASYFNLDPAT------------E 71
+ G +M V A D D + G++ YR+L T + + F ++ T E
Sbjct: 122 KPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDRE 181
Query: 72 HQ-----------GPIQDEGGLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQDGLAV 120
GLS+TAT I VTD+ND PEF ++ + VPE + + V
Sbjct: 182 KVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIV 241
Query: 121 GRVHATDADEGQNA--VVYYSV---PEDIPFVV----DANTGDIRTNKALDYEKQQLY 169
+ TD D+ Y + F + ++N G + K +D+E +++
Sbjct: 242 ANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMF 299
Score = 108 bits (273), Expect = 3e-28
Identities = 44/168 (26%), Positives = 62/168 (36%), Gaps = 32/168 (19%)
Query: 34 MQVKATDKDSGKFGLVEYRLLDNNTD--AASYFNLDPAT-----------EHQ------G 74
++ D K + Y + D F ++P + E
Sbjct: 19 QELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRA 78
Query: 75 PIQDEGG--LSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD-GLAVGRVHATDADE- 130
D G + + + I V D+ND PEF + SVPEG G V V A DAD+
Sbjct: 79 HAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDP 138
Query: 131 -GQNAVVYYSVPEDIP-------FVVDANTGDIRT-NKALDYEKQQLY 169
N ++ Y + P F ++ TGDI T LD EK Q Y
Sbjct: 139 NALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQY 186
Score = 108 bits (273), Expect = 3e-28
Identities = 37/172 (21%), Positives = 54/172 (31%), Gaps = 39/172 (22%)
Query: 28 ELGVTLMQVKATDKDSGK--FGLVEYRLLDNNTD-------------------------A 60
+ V + + TDKD YR+ +
Sbjct: 236 RVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFET 295
Query: 61 ASYFNL-----DPATEHQGPIQDEGGLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQ 115
F L + +G + STATV++ V D+N+ NP F P EG
Sbjct: 296 NRMFVLTVAAENQVPLAKGI---QHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGL 351
Query: 116 D-GLAVGRVHATDADEGQNAVVYYSVPEDI--PFVVDANTGDIRTNKALDYE 164
G + + A D D + Y+ D +D G I T LD E
Sbjct: 352 HAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRE 403
Score = 90.9 bits (226), Expect = 7e-22
Identities = 36/170 (21%), Positives = 60/170 (35%), Gaps = 36/170 (21%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT------------------- 70
G L + A D D + Y L +D A++ +DP
Sbjct: 354 GTMLTTLTAQDPDRYMQQNIRYTKL---SDPANWLKIDPVNGQITTIAVLDRESPNVKNN 410
Query: 71 EHQGPIQ--DEG--GLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQDGLAVGRVHAT 126
+ D G +S T T+ I + DIND P+ LP E E + ++ + A
Sbjct: 411 IYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQV--LPQEAETCETPEPNSI-NITAL 467
Query: 127 DADEGQNAVVYY------SVPEDIPFVVDANTGDI-RTNKALDYEKQQLY 169
D D NA + V + ++ GD + N + + + +Y
Sbjct: 468 DYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIY 517
Score = 66.2 bits (162), Expect = 2e-13
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 106 PYEFSVPEGQDGLAVGRVHATDADEGQNAVVYYSV-------PEDIPFVVDANTGDIRTN 158
++PE G + +D +N + YSV P F+++ +G +
Sbjct: 4 IPPINLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVT 63
Query: 159 KALDYEKQQLYLERVF 174
K LD E + R
Sbjct: 64 KPLDRELIARFHLRAH 79
Score = 51.6 bits (124), Expect = 3e-08
Identities = 10/97 (10%), Positives = 26/97 (26%), Gaps = 21/97 (21%)
Query: 34 MQVKATDKDSGKFG-LVEYRLLDNNTDAASYFNLDPAT----------------EHQGPI 76
+ + A D D + L + + ++ ++ PI
Sbjct: 462 INITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPI 521
Query: 77 Q--DEGG--LSSTATVNIRVTDINDKNPEFQSLPYEF 109
D G S+ + + ++V + +
Sbjct: 522 IITDSGNPPKSNISILRVKVCQCDSNGDCTDVHHHHH 558
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 108 bits (273), Expect = 1e-28
Identities = 33/180 (18%), Positives = 54/180 (30%), Gaps = 41/180 (22%)
Query: 28 ELGVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT----------------- 70
+++ T+ D G ++L F +
Sbjct: 6 RAVRPTKRIEFTEADGDTEGKSVFQLEKETDK--ETFKIRDDNPWVTVETNGAVRVKKKW 63
Query: 71 --EHQGPIQ-----------DEGG---LSSTATVNIRVTDINDKNPEF--QSLPYEFSVP 112
E GP + + V I V D+ND+ P F + LP + V
Sbjct: 64 DYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQ 123
Query: 113 EGQD-GLAVGRVHATDADEGQNAVVYYSVPEDI--PFVVDANTGDIRTNKALDYEKQQLY 169
V + A D D N + Y+ V + F VD +G +RT ++ Y
Sbjct: 124 LNAPPNTPVFTLQARDPDTDHN-IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEY 182
Score = 101 bits (253), Expect = 7e-26
Identities = 48/173 (27%), Positives = 70/173 (40%), Gaps = 41/173 (23%)
Query: 28 ELGVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDP------------------- 68
+ ++ +KA + + Y L A FN+ P
Sbjct: 233 KKDSDIISIKAKSFADRE---IRYTLKAQ-GQGAGTFNIGPTSGIVKLAKELDFEDLRQP 288
Query: 69 --------ATEHQGPIQDEGGLSSTATVNIRVTDINDKNPEFQSLPYE-FSVPEGQD-GL 118
ATE G S++ + IRVTD+ND P+F+ Y+ +V E G
Sbjct: 289 HVYSLIVTATEDSGG------FSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGT 342
Query: 119 AVGRVHATDADEGQNAVVYYSVPEDIPFVVDANTGDIRTNKALDYEKQQLYLE 171
++ RV A D+D G NA + Y V +D F VD + G I NK LD + Y E
Sbjct: 343 SILRVKAMDSDSGSNAEIEYLVSDD-HFAVD-SNGIIVNNKQLDADNNNAYYE 393
Score = 90.4 bits (225), Expect = 6e-22
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 30/163 (18%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT-----------EH------ 72
+ ++A D D+ + Y ++ + T F +D + +
Sbjct: 129 NTPVFTLQARDPDTDHN--IHYFIVRDRTG--GRFEVDERSGVVRTRGTDLFQLDMEYVL 184
Query: 73 ------QGPIQDEGGLSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD-GLAVGRVHA 125
Q D+ ST + + + P+F YE +PE Q + + A
Sbjct: 185 YVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKA 243
Query: 126 TDADEGQ-NAVVYYSVPEDIPFVVDANTGDIRTNKALDYEKQQ 167
+ + + F + +G ++ K LD+E +
Sbjct: 244 KSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLR 286
Score = 49.6 bits (119), Expect = 1e-07
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 13/77 (16%)
Query: 111 VPEGQDGLAVGRVHATDADEGQNAVVYYSVPEDIP-----------FVVDANTGDIRTNK 159
V R+ T+AD + + ++ +V G +R K
Sbjct: 4 VTR--AVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKK 61
Query: 160 ALDYEKQQLYLERVFLI 176
DYE+ F +
Sbjct: 62 KWDYEELGPEKTIDFWV 78
Score = 43.8 bits (104), Expect = 1e-05
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 25/84 (29%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDP---------------ATEHQG 74
G ++++VKA D DSG +EY + D +F +D ++
Sbjct: 341 GTSILRVKAMDSDSGSNAEIEYLVSD------DHFAVDSNGIIVNNKQLDADNNNAYYEF 394
Query: 75 PIQ--DEGG--LSSTATVNIRVTD 94
+ D+G S ATV + +
Sbjct: 395 IVTAKDKGEPPKSGVATVRVYTKN 418
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 97.7 bits (243), Expect = 1e-25
Identities = 25/191 (13%), Positives = 44/191 (23%), Gaps = 51/191 (26%)
Query: 30 GVTLMQVKAT--DKDSGKFGLVEYRL---LDNNTDAASYFNLDPAT-------------- 70
G L+ V A + + L ++ + T
Sbjct: 19 GTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSW 78
Query: 71 -------------------EHQGPIQDEGGLSSTATVNIRVTDINDKNPE---------- 101
EG + + N P
Sbjct: 79 EKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELC 138
Query: 102 FQSLPYEFSVPEGQD-GLAVGRVHATDADEGQNAVVYYSV--PEDIPFVVDANTGDIRTN 158
F F + E + G V Y + E +PF ++ ++ T
Sbjct: 139 FPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTR 198
Query: 159 KALDYEKQQLY 169
ALD E+++ Y
Sbjct: 199 WALDREQREKY 209
Score = 60.3 bits (146), Expect = 1e-11
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 11/79 (13%)
Query: 102 FQSLPYEFSVPEGQD-GLAVGRVHAT--DADEGQNAVVYYS--------VPEDIPFVVDA 150
F Y + Q G + VHA +E + + + E+ +
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 151 NTGDIRTNKALDYEKQQLY 169
+TG + ++LD+ +
Sbjct: 63 DTGLLYLQRSLDHSSWEKL 81
Score = 54.9 bits (132), Expect = 1e-09
Identities = 16/94 (17%), Positives = 24/94 (25%), Gaps = 23/94 (24%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT-----------EHQGPIQ- 77
G + V YRLL+ F P + E + +
Sbjct: 155 GTFHQFRLLPVQFLCPQISVAYRLLEGEGLP---FRSAPDSLEVSTRWALDREQREKYEL 211
Query: 78 -----DEGG---LSSTATVNIRVTDINDKNPEFQ 103
G + V D +D PEF+
Sbjct: 212 VAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 87.9 bits (219), Expect = 4e-23
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 90 IRVTDINDKNPEFQSLPYEFSVPE-GQDGLAVGRVHATDADEGQNAVVYYS----VPEDI 144
+ ND P F+ E +PE G +V ++HATDAD G NA + Y V
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 145 --PFVVDANTGDIRTNKALDYEKQQLY 169
F ++ TG I ++LD E+ ++
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIH 88
Score = 51.3 bits (124), Expect = 3e-09
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 18/86 (20%)
Query: 29 LGVTLMQVKATDKDSGKFGLVEYRLLDNNTDAAS-YFNLDPAT---------------EH 72
+G +++Q+ ATD D G + Y A F L+ T H
Sbjct: 29 VGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIH 88
Query: 73 QGPIQ--DEGGLSSTATVNIRVTDIN 96
+ + D + ATV I VTD+N
Sbjct: 89 KVTVLASDGSSTPARATVTINVTDVN 114
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 87.9 bits (219), Expect = 4e-23
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 90 IRVTDINDKNPEFQSLPYEFSVPE-GQDGLAVGRVHATDADEGQNAVVYYS---VPEDIP 145
+ ND +P F+ YE + E G + ++ A D D G N + Y E +
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 146 --FVVDANTGDIRTNKALDYEKQQLY 169
+D +G + +D E+
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQL 87
Score = 55.6 bits (135), Expect = 1e-10
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 25/94 (26%)
Query: 29 LGVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPATEHQGPI------------ 76
G ++Q++A D D G G +EY LD + G +
Sbjct: 29 PGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETS---GWLSVLHRIDREEVN 85
Query: 77 --------QDEGG--LSSTATVNIRVTDINDKNP 100
+D G + ATV + + D ND P
Sbjct: 86 QLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 72.4 bits (178), Expect = 2e-17
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 100 PEFQSLPYEFSVPEGQDGLAVGRVHATDADEGQNAVVYYSV-------PEDIPFVVDANT 152
P + S PE + G + +++ + V+YS+ P F+++ T
Sbjct: 2 PLGSWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERET 61
Query: 153 GDIRTNKALDYEKQQLYLERVF 174
G ++ + LD E+ Y
Sbjct: 62 GWLKVTEPLDRERIATYTLFSH 83
Score = 37.4 bits (87), Expect = 4e-04
Identities = 15/91 (16%), Positives = 23/91 (25%), Gaps = 27/91 (29%)
Query: 28 ELGVTLMQVKATDKDSGKFGLVEYRLLDNNTD--AASYFNLDPATEHQGPI--------- 76
E G + + K G V Y + D F ++ T G +
Sbjct: 17 EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERET---GWLKVTEPLDRE 73
Query: 77 -----------QDEGG--LSSTATVNIRVTD 94
G + + I VTD
Sbjct: 74 RIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 70.8 bits (174), Expect = 1e-16
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 109 FSVPEGQDGLAVGRVHATDADEGQNAVVYYSV-------PEDIPFVVDANTGDIRTNKAL 161
++PE G + + +N + YSV P F+++ +G + K L
Sbjct: 9 INLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 162 DYEKQQLYLERVF 174
D E + R
Sbjct: 69 DRELIARFHLRAH 81
Score = 55.7 bits (135), Expect = 6e-11
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 27/99 (27%)
Query: 28 ELGVTLMQVKATDKDSGKFGLVEYRLLDNNTD--AASYFNLDPATEHQGPI--------- 76
G ++ K + Y + D F ++P + G +
Sbjct: 15 SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPIS---GQLSVTKPLDRE 71
Query: 77 -----------QDEGG--LSSTATVNIRVTDINDKNPEF 102
D G + + + I V D+ND PEF
Sbjct: 72 LIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 65.9 bits (161), Expect = 9e-15
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 109 FSVPEGQD---GLAVGRVHATDADEGQNAVVYYSV---PEDIPFVVDANTGDIRTNKALD 162
+PE Q VG+V +D EG + F ++ NTG + + LD
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 163 YEKQQLYLERVF 174
E Y V
Sbjct: 68 RETIATYQLYVE 79
Score = 45.8 bits (109), Expect = 2e-07
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 27/88 (30%)
Query: 29 LGVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPATEHQGPI------------ 76
+ +V +D+ G + + +D + F ++ T G +
Sbjct: 18 FPRDVGKVVDSDRPEGSKFRLTGKGVDQDPK--GTFRINENT---GSVSVTRTLDRETIA 72
Query: 77 --------QDEGG--LSSTATVNIRVTD 94
D G L + + V D
Sbjct: 73 TYQLYVETTDASGKTLEGPVPLEVIVID 100
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 64.8 bits (158), Expect = 2e-14
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 105 LPYEFSVPEGQDG---LAVGRVHATDADEGQNAVVYYSV---PEDIPFVVDANTGDIRTN 158
L +PE Q +VG+V ++ EG + F ++ +GD+
Sbjct: 3 LATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVT 62
Query: 159 KALDYEKQQLYLERVF 174
+ LD E Y V
Sbjct: 63 RPLDREAIANYELEVE 78
Score = 44.3 bits (105), Expect = 1e-06
Identities = 10/85 (11%), Positives = 27/85 (31%), Gaps = 21/85 (24%)
Query: 29 LGVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT-----------------E 71
++ +V ++ G + + +D + F ++ + E
Sbjct: 17 FPRSVGKVIRSEGTEGAKFRLSGKGVDQDPK--GIFRINEISGDVSVTRPLDREAIANYE 74
Query: 72 HQGPIQDEGG--LSSTATVNIRVTD 94
+ + D G + ++I V D
Sbjct: 75 LEVEVTDLSGKIIDGPVRLDISVID 99
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 63.2 bits (154), Expect = 9e-14
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 109 FSVPE---GQDGLAVGRVHATDADEGQNAVVYYSV---PEDIPFVVDANTGDIRTNKALD 162
S+PE VGRV +D G +Y F ++ N+G++ KALD
Sbjct: 7 ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALD 66
Query: 163 YEKQQLYLERVF 174
E Y +V
Sbjct: 67 REAIPSYQLQVE 78
Score = 45.8 bits (109), Expect = 2e-07
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 27/88 (30%)
Query: 29 LGVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPATEHQGPI------------ 76
+ +V +D+ G + + +D F ++ + G +
Sbjct: 17 FPKIVGRVVVSDRIPGSKIKLYGKGVDQEPK--GIFKINENS---GEVSVTKALDREAIP 71
Query: 77 --------QDEGG--LSSTATVNIRVTD 94
DE G + + I V D
Sbjct: 72 SYQLQVETTDENGKTIEGPVDLEILVID 99
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 62.7 bits (153), Expect = 2e-13
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 109 FSVPEGQD---GLAVGRVHATDADEGQNAVVYYSV-------PEDIPFVVDANTGDIRTN 158
++ EG+D + ++H +D E + + Y P FV + +TG++
Sbjct: 17 VALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVT 75
Query: 159 KALDYEKQQLYLERVF 174
LD E+ +L +
Sbjct: 76 SILDREETPFFLLTGY 91
Score = 52.3 bits (126), Expect = 2e-09
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 28/98 (28%)
Query: 29 LGVTLMQVKATDKDSGKFGLVEYRLLDNNTD--AASYFNLDPATEHQGPI---------- 76
+ ++ +D + + Y+ F + T G +
Sbjct: 27 KKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDT---GELNVTSILDREE 82
Query: 77 ----------QDEGG--LSSTATVNIRVTDINDKNPEF 102
D G + + I+V DIND P F
Sbjct: 83 TPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 55.9 bits (135), Expect = 4e-11
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 109 FSVPEGQDGL--AVGRVHATDADEGQNAVVYYSVPEDI--PFVVDANTGDIRTNKALDYE 164
F V E G +D D G ++ Y E F +D TGDI + LD E
Sbjct: 8 FFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDRE 67
Query: 165 KQQLYLERVF 174
++ Y R
Sbjct: 68 ERSQYTLRAQ 77
Score = 35.1 bits (81), Expect = 0.002
Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 29/88 (32%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPATEHQGPI------------- 76
+ +D D G G ++Y L F +D T G I
Sbjct: 18 DPLYVGKLHSDMDRGD-GSIKYILSGEGAG--IVFTIDDTT---GDIHAIQRLDREERSQ 71
Query: 77 -------QDEGG---LSSTATVNIRVTD 94
D + + I++ D
Sbjct: 72 YTLRAQALDRRTGRPMEPESEFIIKIQD 99
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 54.0 bits (130), Expect = 2e-10
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 109 FSVPEGQDGLAVGRVH--ATDADEGQNAVVYYSVPEDIP--FVVDANTGDIRTNKALDYE 164
V E G V TD D G + Y + F ++ TGDI K LD E
Sbjct: 7 MFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDRE 66
Query: 165 KQQLYLERVF 174
++ Y
Sbjct: 67 EKAEYTLTAQ 76
Score = 35.5 bits (82), Expect = 0.002
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 23/85 (27%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDAASYFNLDPAT-----------EHQ----- 73
L+ TD D G ++Y L + + F ++ T E +
Sbjct: 17 EPILVGRLHTDLDPGS-KKIKYILSGDGAG--TIFQINDITGDIHAIKRLDREEKAEYTL 73
Query: 74 -GPIQDEGG---LSSTATVNIRVTD 94
D L + I+V D
Sbjct: 74 TAQAVDFETNKPLEPPSEFIIKVQD 98
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.039
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 34/99 (34%)
Query: 108 EFSVPEGQDG------LAV--GRVHATDADEGQNAVVYYSVPEDIPFVVD-AN------- 151
+ +VP + G +A+ GRV A+ + E VV V + ++V+ N
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV-ERVGKRTGWLVEIVNYNVENQQ 1852
Query: 152 ---TGDIR----TNKALDYEK----------QQLYLERV 173
GD+R L++ K + L LE V
Sbjct: 1853 YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 28.8 bits (65), Expect = 0.51
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 9/34 (26%)
Query: 88 VNIRVTDINDKNPEFQSLPYEFSVPEGQDGLAVG 121
I++ D+ND PEF E + G + G
Sbjct: 101 GEIQLQDVNDHAPEF---------MEDESGPSSG 125
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural
genomics, NIA national institute of allergy and
infectious diseases; HET: AMP; 1.58A {Streptococcus
pneumoniae} PDB: 4e94_A*
Length = 346
Score = 29.5 bits (66), Expect = 0.63
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 113 EGQDGLAVGRVHATDADEGQNAVVYYSVPEDIPFVVDANTGDIRTNKAL 161
+GL VG+ + + + +IP V + N G +
Sbjct: 277 AVINGLLVGKPMDETFHDDYKEALLDIIDSNIPIVYNLNVGHATPRAIV 325
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein;
1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A
2b2j_A
Length = 399
Score = 28.7 bits (65), Expect = 0.94
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 11/36 (30%)
Query: 1 MTPCPIPSALEMTSDSLFYGAMARDKHELGVTLMQV 36
M P + FY M R K+ + +
Sbjct: 19 MVP-----GV-----GFFYAGMVRRKNAVN-MIALS 43
>1u7g_A Probable ammonium transporter; right handed helical bundle,
transmembrane helices, ammonia membrane protein, RH
protein, transport protein; HET: MSE BOG; 1.40A
{Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A*
1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A*
3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A
2nuu_A* 3c1j_A 2npk_A
Length = 385
Score = 28.7 bits (65), Expect = 1.2
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 16 SLFYGAMARDKHELGVTLMQV 36
+LFYG + R K+ L L QV
Sbjct: 29 ALFYGGLIRGKNVLS-MLTQV 48
>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase,
structural genomics, protein structure initiative,
nysgrc; 1.80A {Kosmotoga olearia}
Length = 400
Score = 27.0 bits (60), Expect = 4.3
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 140 VPEDIPFVVDANTG----DIRTNKALD 162
V + P DAN+ T KA+D
Sbjct: 202 VGDHFPLWTDANSSFELDQWETFKAMD 228
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 102
Score = 25.6 bits (56), Expect = 4.9
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 78 DEGGLSSTATVNIRVTDINDKNP 100
DE L S ++VN+ V + + +
Sbjct: 79 DERNLQSQSSVNVIVKEESGPSS 101
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain,
beta barrel, collagen RECO domain, hydrolase; 1.18A
{Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Length = 85
Score = 24.6 bits (54), Expect = 9.3
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 78 DEGGLSSTATVNIRVTD 94
D+ G ++T + I + +
Sbjct: 69 DDKGATATESFTIEIKN 85
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 26.0 bits (57), Expect = 9.4
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 82 LSSTATVNIRVTDINDKNPEFQSLPYEFSVPEGQD 116
+ A V I + F P EG+D
Sbjct: 204 TGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKD 238
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.379
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,728,866
Number of extensions: 156985
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 103
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.9 bits)