RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5886
(184 letters)
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 50.5 bits (120), Expect = 2e-09
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 100 PEFQSLPYEFSVPEGQDGLAVGRVHATDADEGQNAVVYYSVPEDIP-------FVVDANT 152
P + S PE + G + +++ + V+YS+ F+++ T
Sbjct: 1 PLGSWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERET 60
Query: 153 GDIRTNKALDYEKQQLYLERV 173
G ++ + LD E+ Y
Sbjct: 61 GWLKVTEPLDRERIATYTLFS 81
Score = 40.9 bits (95), Expect = 8e-06
Identities = 13/86 (15%), Positives = 20/86 (23%), Gaps = 21/86 (24%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTDA--ASYFNLDPATEHQGPI----------- 76
G + + K G V Y + D F ++ T
Sbjct: 18 GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATY 77
Query: 77 ------QDEGG--LSSTATVNIRVTD 94
G + + I VTD
Sbjct: 78 TLFSHAVSSNGNAVEDPMEILITVTD 103
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 48.2 bits (114), Expect = 2e-08
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 109 FSVPEGQDGLAVGRVHATDADEGQNAVVYYSVPEDIP-------FVVDANTGDIRTNKAL 161
V E + G R+ +++ + VYYS+ F ++ TG + + L
Sbjct: 7 IKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL 66
Query: 162 DYEKQQLYLERV 173
D E+ Y+
Sbjct: 67 DREEYDKYVLSS 78
Score = 42.1 bits (98), Expect = 3e-06
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 21/86 (24%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLLDNNTD--AASYFNLDPATEHQGPIQ---------- 77
G ++ + +F V Y + D F ++ T +
Sbjct: 15 GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKY 74
Query: 78 -------DEGG--LSSTATVNIRVTD 94
E G + + I V D
Sbjct: 75 VLSSHAVSENGSPVEEPMEITINVID 100
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 47.7 bits (112), Expect = 2e-08
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 97 DKNPEFQSLPYEFSVPEGQD-GLAVGRVHATDADEGQNAVVYYSVPEDIP--FVVDANTG 153
++ P F V E G + + A D D+ Q + Y + D V+ + G
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNG 60
Query: 154 DIRTNKALDYEKQQLYLERVFLI 176
+ N LD E + + +I
Sbjct: 61 IVTGNGNLDRESEYVKNNTYTVI 83
Score = 26.1 bits (56), Expect = 1.5
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 77 QDEGG--LSSTATVNIRVTDI 95
D+G + T T+ + V D+
Sbjct: 87 TDDGVSVGTGTGTLILHVLDV 107
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 44.2 bits (103), Expect = 5e-07
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 96 NDKNPEFQSLPYEFSVPEGQDGLAVGRVHATDADEGQNAVVYYSVPED--------IPFV 147
ND P F Y VPE + G V R+ TD D I
Sbjct: 2 NDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 61
Query: 148 VDANTGDIRTNKALDYEKQQLY 169
++N G + T K LD+E ++ Y
Sbjct: 62 PESNQGILTTAKGLDFELRKQY 83
Score = 27.3 bits (59), Expect = 0.54
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 74 GPIQDEGGLSSTATVNIRVTDI 95
+STATV + V D+
Sbjct: 92 AEPFSVPLPTSTATVTVTVEDV 113
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 43.7 bits (102), Expect = 7e-07
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 109 FSVPEGQDGLAVGRVHATDADEGQNAVVYYSVPEDIP-------FVVDANTGDIRTNKAL 161
++PE G + + +N + YSV F+++ +G + K L
Sbjct: 9 INLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 162 DYEKQQ 167
D E
Sbjct: 69 DRELIA 74
Score = 37.1 bits (85), Expect = 2e-04
Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 21/86 (24%)
Query: 30 GVTLMQVKATDKDSGKFGLVEYRLL--DNNTDAASYFNLDPAT-----------EHQGPI 76
G ++ K + Y + + F ++P + E
Sbjct: 17 GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARF 76
Query: 77 Q------DEGG--LSSTATVNIRVTD 94
D G + + + I V D
Sbjct: 77 HLRAHAVDINGNQVENPIDIVINVID 102
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 39.6 bits (91), Expect = 4e-05
Identities = 8/78 (10%), Positives = 21/78 (26%), Gaps = 4/78 (5%)
Query: 94 DINDKNPEFQSLPYEFSVPEGQD-GLAVGRVHATDADEGQNAVVYYSVPEDIPFVVDANT 152
+I F Y +P+ G + V ++ + + +
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRK---VQYESSEPADFKVDED 61
Query: 153 GDIRTNKALDYEKQQLYL 170
G + ++ +Q
Sbjct: 62 GTVYAVRSFPLTAEQAKF 79
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 35.1 bits (79), Expect = 0.001
Identities = 30/85 (35%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 96 NDKNPEFQSLPYEFSVPEGQD-GLAVGRVHATDADEGQNAVVYYSV---------PEDIP 145
ND PEF + SVPEG G V V A DAD+ P
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 146 FVVDANTGDIRTNKAL-DYEKQQLY 169
F ++ TGDI T A D EK Q Y
Sbjct: 61 FTINNETGDIITVAAGLDREKVQQY 85
Score = 27.4 bits (59), Expect = 0.54
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 69 ATEHQGPIQDEGGLSSTATVNIRVTD 94
AT+ +G GLS+TAT I VTD
Sbjct: 91 ATDMEGNPT--YGLSNTATAVITVTD 114
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 32.4 bits (72), Expect = 0.011
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 96 NDKNPEFQSLPYEFSVPEGQD-GLAVGRVHATDADEG---QNAVVYYSVPEDIP------ 145
ND PEF +E SV EG G +V +V ATDAD+ NA + Y++ P
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 146 -FVVDANTGDIRTNKALDYEKQQ 167
F V+ +TG I + +
Sbjct: 61 MFTVNRDTGVISVLTSGLDRESY 83
Score = 26.2 bits (56), Expect = 1.5
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 69 ATEHQGPIQDEGGLSSTATVNIRVTD 94
A + QG GLS+TA I V D
Sbjct: 92 AADLQGE-----GLSTTAKAVITVKD 112
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 31.6 bits (70), Expect = 0.018
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 96 NDKNPEFQSLPYEFSVPEGQD-GLAVGRVHATDAD---EGQNAVVYYSVPEDIP------ 145
ND P+F + SV EG G V V ATD D + N V+ YS+ + P
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 146 -FVVDANTGDIR-TNKALDYEKQQLY 169
F ++ TG I LD EK Y
Sbjct: 62 LFTINRETGVISLIGTGLDREKFPEY 87
Score = 26.6 bits (57), Expect = 1.0
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 77 QDEGGLSSTATVNIRVTD 94
+ GLS I++TD
Sbjct: 96 LEGAGLSVEGKAIIQITD 113
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 28.5 bits (62), Expect = 0.24
Identities = 4/22 (18%), Positives = 5/22 (22%)
Query: 76 IQDEGGLSSTATVNIRVTDIND 97
+ D VN V
Sbjct: 80 LSDAQNNPQLTVVNATVCSCEG 101
Score = 27.7 bits (60), Expect = 0.39
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 96 NDKNPEFQSLPYEFSVPEGQDGLAVGRVHATDADEGQNAVVYY 138
ND P P F++ + + +DAD N Y
Sbjct: 1 NDNGPVPS--PRVFTMCDQNP--EPQVLTISDADIPPNTYPYK 39
>d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 139
Score = 27.0 bits (59), Expect = 0.88
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 51 YRLLDNNTDAASYFNLDPAT-EHQGPIQDEGGLSSTATVNIRVTDINDKNPEFQSLPYEF 109
Y + + +YF A H ++VT + N F +
Sbjct: 15 YERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKV 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.379
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 638,039
Number of extensions: 27181
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 23
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.4 bits)