BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5888
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
Y C CGK F +S+NL +H RTHTGE+PYKC C +SFS SS+LQ+H R H EKP+KC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEKPYKC 63
Query: 291 PLCDRCFGQQTNLDRHLKKHE 311
P C + F + +L RH + H+
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQ 84
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 38/55 (69%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 285
Y C CGK F +S++L +H RTHTGE+PYKC C +SFS S +L RH R NK+
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGP 315
E+PYKC C +SFS SSNLQ+H R H EKP+KCP C + F Q ++L +H + H + P
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Query: 219 SISNNTGKPKDR-YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRH 277
S++ +P ++ YAC CGK F RS +L H RTHTGE+PYKC C +SFS +L RH
Sbjct: 9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
Query: 278 VRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGP 315
R H EKP+KCP C + F Q+ NL H + H + P
Sbjct: 69 QR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP 105
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
Y C CGK F +LTRH RTHTGE+PYKC C +SFS +NL+ H R H EKP+ C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYAC 108
Query: 291 PLCDRCFGQQTNLDRHLKKHEADGP 315
P C + F Q +L H + H + P
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKP 133
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
Y C CGK F + ANL H RTHTGE+PY C C +SFS ++L+ H R H EKP+KC
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKC 136
Query: 291 PLCDRCFGQQTNLDRHLKKHEADGP 315
P C + F ++ NL H + H + P
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEKP 161
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
YAC CGK F + A+L H RTHTGE+PYKC C +SFS NL H R H EKP+KC
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKC 164
Query: 291 PLCDRCFGQQTNLDRHLKKH 310
P C + F ++ L+ H + H
Sbjct: 165 PECGKSFSRRDALNVHQRTH 184
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 231 YAC--KFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 288
YAC + C + F RSA+LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 289 KCPLCDRCFGQQTNLDRHLKKH 310
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 256 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
E+PY C + C+R FS S++L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 314 GPTILD 319
P D
Sbjct: 61 KPFACD 66
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 231 YAC--KFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 288
YAC + C + F RSA LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 289 KCPLCDRCFGQQTNLDRHLKKH 310
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 256 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
E+PY C + C+R FS S+ L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 314 GPTILD 319
P D
Sbjct: 61 KPFACD 66
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ C+ CGK F R L H+R HTG +PYKCK C+ + + SS+L +H+R IH+ E+PFKC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKC 67
Query: 291 PLCDRCFGQQTNLDRHLKKHEAD-GPT 316
+C + L HL+ H D GP+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSGPS 94
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 258 PYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGP 315
P+KC+ C + FS L+ H+R H KP+KC CD ++L++HL+ H + P
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 231 YAC--KFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 288
YAC + C + F S+NLTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 289 KCPLCDRCFGQQTNLDRHLKKH 310
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 256 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
E+PY C + C+R FS SSNL RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 314 GPTILD 319
P D
Sbjct: 61 KPFACD 66
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 226 KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 285
K K + CKFCG+ F +S NL H RTHT E+PY C C ++F +L+ H R IH+KE
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKE 71
Query: 286 KPFKCPLCDRCFGQQTNLDRH 306
KPFKC C + F Q L H
Sbjct: 72 KPFKCQECGKGFCQSRTLAVH 92
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 236 CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLC 293
C KV+ +S++L HLRTHTGE+PYKC + C+ F+ S L RH R H KPF+C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCGVC 81
Query: 294 DRCFGQQTNLDRHLKKHE 311
+R F + +L H+K+H+
Sbjct: 82 NRSFSRSDHLALHMKRHQ 99
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 231 YACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 283
Y C + C F RS LTRH R HTG +P++C C RSFS S +L H++ N
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 261 CKY--CERSFSISSNLQRHVRNIHNKEKPFKCPL--CDRCFGQQTNLDRHLKKHEADGP 315
C Y C + ++ SS+L+ H+R H EKP+KC CD F + L RH +KH P
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 231 YAC--KFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 288
YAC + C + F RS LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 289 KCPLCDRCFGQQTNLDRHLKKH 310
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 11/86 (12%)
Query: 208 PLANSPKQFQES------ISNNTG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYK 260
P+ + ++F S I +TG KP + C+ C + F RS +LT H+RTHTGE+P+
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKP---FQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 261 CKYCERSFSISSNLQRHVRNIHNKEK 286
C C R F+ S +RH + IH ++K
Sbjct: 65 CDICGRKFARSDERKRHTK-IHLRQK 89
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 256 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
E+PY C + C+R FS S L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 314 GPTILD 319
P D
Sbjct: 61 KPFACD 66
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 231 YAC--KFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 288
YAC + C + F RS LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 62
Query: 289 KCPLCDRCFGQQTNLDRHLKKH 310
C +C R F + RH K H
Sbjct: 63 ACDICGRKFARSDERKRHTKIH 84
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 11/85 (12%)
Query: 208 PLANSPKQFQES------ISNNTG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYK 260
P+ + ++F S I +TG KP + C+ C + F RS +LT H+RTHTGE+P+
Sbjct: 7 PVESCDRRFSRSDELTRHIRIHTGQKP---FQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 261 CKYCERSFSISSNLQRHVRNIHNKE 285
C C R F+ S +RH + IH ++
Sbjct: 64 CDICGRKFARSDERKRHTK-IHLRQ 87
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 256 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
E+PY C + C+R FS S L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 314 GPTILD 319
P D
Sbjct: 60 KPFACD 65
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 231 YAC--KFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 288
YAC + C + F RS LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 289 KCPLCDRCFGQQTNLDRHLKKH 310
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 256 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
E+PY C + C+R FS S L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 314 GPTILD 319
P D
Sbjct: 61 KPFACD 66
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 231 YAC--KFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 288
YAC + C + F +S +LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 289 KCPLCDRCFGQQTNLDRHLKKH 310
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 11/86 (12%)
Query: 208 PLANSPKQFQES------ISNNTG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYK 260
P+ + ++F +S I +TG KP + C+ C + F RS +LT H+RTHTGE+P+
Sbjct: 8 PVESCDRRFSQSGSLTRHIRIHTGQKP---FQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 261 CKYCERSFSISSNLQRHVRNIHNKEK 286
C C R F+ S +RH + IH ++K
Sbjct: 65 CDICGRKFARSDERKRHTK-IHLRQK 89
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 256 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
E+PY C + C+R FS S +L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 314 GPTILD 319
P D
Sbjct: 61 KPFACD 66
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 75.1 bits (183), Expect = 7e-14, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 236 CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLC 293
CGK + +S++L HLRTHTGE+PY C + C F+ S L RH R H +PF+C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKC 72
Query: 294 DRCFGQQTNLDRHLKKH 310
DR F + +L H+K+H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 231 YACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVR 279
Y C + CG F RS LTRH R HTG +P++C+ C+R+FS S +L H++
Sbjct: 37 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 87
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 75.1 bits (183), Expect = 8e-14, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 236 CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLC 293
CGK + +S++L HLRTHTGE+PY C + C F+ S L RH R H +PF+C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKC 71
Query: 294 DRCFGQQTNLDRHLKKH 310
DR F + +L H+K+H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 231 YACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVR 279
Y C + CG F RS LTRH R HTG +P++C+ C+R+FS S +L H++
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ CK CGK F RS+ L+ HL H+ +PY C+YC + F S++++H IH EKP KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKC 60
Query: 291 PLCDRCFGQQTNLDRHLKKHEA 312
+C + F Q +NL H +KH
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 259 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGP 315
+ CK C +SF SS L H+ IH+ +P+ C C + F Q++++ +H H + P
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP 57
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPF 288
+ C CGK F S+ L RH HTGE+P++C + C + FS+ NL+ HVR IH ++P+
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPY 93
Query: 289 KCPL--CDRCFGQQTNLDRHLKKH 310
CP C++ F Q TNL H+ H
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTH 117
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 185 NSGLLNGHPIQSPTIDLIRSQLPPLANSPKQFQESISNNTGKPKDRYACKF--CGKVFPR 242
NS + P + + S K + + + KP + C F CGK F
Sbjct: 20 NSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKP---FQCTFEGCGKRFSL 76
Query: 243 SANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHV 278
NL H+R HTG++PY C + C + F+ S+NL+ H+
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 231 YAC--KFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 288
YAC + C + F + NL H+R HTG++P++C+ C R+FS + L +H+R H EKPF
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTGEKPF 63
Query: 289 KCPLCDRCFGQQTNLDRHLKKH 310
C +C R F DRH K H
Sbjct: 64 ACDICGRKFATLHTRDRHTKIH 85
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 256 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
E+PY C + C+R FS +NL H+R IH +KPF+C +C R F Q T L++H++ H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 314 GPTILD 319
P D
Sbjct: 61 KPFACD 66
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 231 YAC--KFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 288
YAC + C + F + NL H+R HTG++P++C+ C R+FS ++L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT-HTGEKPF 63
Query: 289 KCPLCDRCFGQQTNLDRHLKKH 310
C +C R F RH K H
Sbjct: 64 ACDICGRKFATLHTRTRHTKIH 85
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 256 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
E+PY C + C+R FS +NL H+R IH +KPF+C +C R F QQ +L+ H++ H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 314 GPTILD 319
P D
Sbjct: 61 KPFACD 66
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+ C+ C + F + A+L H+RTHTGE+P+ C C R F+ RH + IH ++K
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTK-IHLRQK 89
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 231 YACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 288
Y C F C + F RS L RH R HTG +P++CK C+R FS S +L+ H R H EKPF
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPF 95
Query: 289 KC--PLCDRCFGQQTNLDRHLKKH 310
C P C + F + L RH H
Sbjct: 96 SCRWPSCQKKFARSDELVRHHNMH 119
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 236 CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLC 293
C K + + ++L H R HTGE+PY+C + CER FS S L+RH R H KPF+C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTC 72
Query: 294 DRCFGQQTNLDRHLKKHEADGP 315
R F + +L H + H + P
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKP 94
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 237 GKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPL-- 292
GK F L H+R HTGE+P+ C + C + F+ S NL+ H R H EKPFKC
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTGEKPFKCEFEG 127
Query: 293 CDRCFGQQTNLDRHLKKHEAD--GPT 316
CDR F ++ +H+ H +D GP+
Sbjct: 128 CDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
Query: 236 CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 286
CGK+F RS NL H RTHTGE+P+KC++ C+R F+ SS+ ++H+ ++H +K
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM-HVHTSDK 149
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 283
Y C CGK F RS+ L +H R HTGE+PYKC C ++FS +S L H R IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR-IHT 66
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGP 315
E+PY C C ++FS SS L +H R +H EKP+KC C + F Q + L H + H GP
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIH-TSGP 69
Query: 316 T 316
+
Sbjct: 70 S 70
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 226 KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 285
+ + RY C CGK F S++L++H RTHTGE+PYKC C ++F S+L H R +H
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTGS 72
Query: 286 KP 287
P
Sbjct: 73 GP 74
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 259 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
YKC C +SFS SS+L +H R H EKP+KC C + F Q+++L H + H GP+
Sbjct: 19 YKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 231 YACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 286
+ C F C K + R NL HLR+HTGE+PY C++ C ++FS +S+ +H H+ EK
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 287 PFKCPL--CDRCFGQQTNLDRHLK 308
P+ C L C + + ++L +H+K
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 240 FPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPL--CDR 295
F L H+R HTGE+P+KC + C +S+S NL+ H+R+ H EKP+ C C +
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSK 107
Query: 296 CFGQQTNLDRH 306
F ++ +H
Sbjct: 108 AFSNASDRAKH 118
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 223 NTGKPKDR-YAC--KFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVR 279
N PK R YAC + C + F RS LTRH+R HTG++P++C+ C R+FS S +L H+R
Sbjct: 11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 257 QPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+PY C + C+R FS S L RH+R IH +KPF+C +C R F + +L H++ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHT 254
+ C+ C + F RS +LT H+RTHT
Sbjct: 50 FQCRICMRNFSRSDHLTTHIRTHT 73
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 284 KEKPFKCPL--CDRCFGQQTNLDRHLKKHEADGP 315
K +P+ CP+ CDR F + L RH++ H P
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP 49
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 230 RYACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKE 285
RY C F CG + ++ L HL HTGE+P+ CK CE+ F+ +L RH H E
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-HTGE 61
Query: 286 KPFKCPL--CDRCFGQQTNLDRHLKK 309
K F C CD F + N+ +H +
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNR 87
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 211 NSPKQFQESISNNTG-KPKDRYACK--FCGKVFPRSANLTRHLRTHTGEQPYKCKY--CE 265
N + Q +S +TG KP + CK C K F +LTRH THTGE+ + C C+
Sbjct: 16 NKNWKLQAHLSKHTGEKP---FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCD 72
Query: 266 RSFSISSNLQRHVRNIHN 283
F+ +N+++H HN
Sbjct: 73 LRFTTKANMKKHFNRFHN 90
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 232 ACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE--KPFK 289
AC+ CGK+F +L RH +H+GE+PY C C F + HVR+ H+ KP+
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYI 67
Query: 290 CPLCDRCFGQQTNLDRHLKK 309
C C + F + +L+ H+K+
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQ 87
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGE--QPYKCKYCERSFSISSNLQRHVRNIHN 283
Y+C CG F R ++ H+R+H G +PY C+ C + FS +L H++ +H+
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEA 312
+G C+ C + F +L RH + H+ EKP+ CP+C F ++ + H++ H+
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRH 277
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRH 306
+P++C+ C R+FS S +L H+R H EKPF C +C R F + RH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 50
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKHEADGPTILD 319
KPF+C +C R F + +L H++ H + P D
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 35
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 233 CKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
C +CGK F + L HLRTHTGE+PYKC++CE + + ++L+ H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 255 GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
G +C YC + F + L H+R H EKP+KC C+ Q+T+L HL++H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRT-HTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 222 NNTGKPKDR-YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 280
++G D+ Y C+ CGK F + RH+ H G +PY C C + F + +L H++
Sbjct: 1 GSSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK- 58
Query: 281 IHNKEKPFKCPLCDRCFGQQTNLDRHL 307
IH KP++C +C + F + + RH+
Sbjct: 59 IHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
+G++ Y C+ C +SF+ S RH+ ++H +P+ C +C + F + +L H+K H
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 314 GP 315
P
Sbjct: 64 KP 65
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 251 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE-KPFKCPLCDRCFGQQTNLDRHLKK 309
RTH+GE+PY+C C F+ S ++ H+ H + F CP CD ++++L HL+K
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 310 -HEADGPT 316
H GP+
Sbjct: 68 QHSYSGPS 75
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 283
+ C+ C + F R +L RH R+HT E+PY C C R+F+ L RH + IH+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 259 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKK 309
+ C+ C R+F+ +L+RH R+ H EKP+ C LC+R F ++ L RH +K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 288 FKCPLCDRCFGQQTNLDRHLKKHEADGP 315
F C +C R F +Q +L RH + H + P
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP 30
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 236 CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRN 280
CGK + +S++L H RTHTGE+P+ C + CER F+ S L RH R
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 250 LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPL--CDRCFGQQTNLDRHL 307
+R+H P C +++ SS+L+ H R H EKPF C C+R F + L RH
Sbjct: 15 IRSHICSHPG----CGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRFARSDELSRHR 69
Query: 308 KKH 310
+ H
Sbjct: 70 RTH 72
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
Y C C F NL H HTGE+PY+C C F+ +NL+ H R IH+ EKP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEKP 73
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGP 315
++PYKC C+ SF NL H + +H EKP++C +C F + NL H + H + P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 230 RYACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKE 285
RY C F CG + ++ L HL HTGE+P+ CK CE+ F+ +L RH H E
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-HTGE 70
Query: 286 KPFKCPL--CDRCFGQQTNLDRHL 307
K F C CD F + N+ +H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHF 94
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 20/160 (12%)
Query: 211 NSPKQFQESISNNTG-KPKDRYACK--FCGKVFPRSANLTRHLRTHTGEQPYKCKY--CE 265
N + Q + +TG KP + CK C K F +LTRH THTGE+ + C C+
Sbjct: 25 NKNWKLQAHLCKHTGEKP---FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCD 81
Query: 266 RSFSISSNLQRHVRNIHN-KEKPFKCPL--CDRCFGQQTNLDRHLKKHEA----DGPTIL 318
F+ +N+++H HN K + C C + F + L H H + P
Sbjct: 82 LRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEG 141
Query: 319 DDRNGGIPSPSMIHNRCRPPSGILNDDSYFEEIRSFMGKV 358
D+ +PS H + DDS SF+GK
Sbjct: 142 CDKRFSLPSRLKRHEKVHAGYPCKKDDSC-----SFVGKT 176
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHE 311
E+P+ C +C +++ +S L RH R H +P CP C +CF Q+ ++RHLK H+
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNK 284
+ C FCGK + ++ L+RH R H G +P C C + F S + RH++ NK
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 223 NTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
N + +Y C++C KVFP + T+H HTGE+ Y+C C +SF + H++++H
Sbjct: 43 NIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVH 102
Query: 283 NKE 285
+++
Sbjct: 103 SQD 105
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
Y C C + + +L RH H+ E+ Y C+YCE+ F ++ +H + H E+ ++C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH-HTGERRYQC 81
Query: 291 PLCDRCFGQQTNLDRHLKKHEADGPT 316
C + F + H+K + P+
Sbjct: 82 LACGKSFINYQFMSSHIKSVHSQDPS 107
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 255 GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCF 297
G Y C C+RS+ ++L+RH NIH+ EK + C C++ F
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVF 60
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 222 NNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNI 281
N + + + C C + F R L H+ +HTGE PYKC C + F +LQ H+ +
Sbjct: 58 NCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKL 117
Query: 282 HN 283
H+
Sbjct: 118 HS 119
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 233 CKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRH-VRNIHNK-EKPFKC 290
C C K F L H R HTGE+P++C C + + NL H RN N+ E+ F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 291 PLCDRCFGQQTNLDRHLKKHEADGP 315
+C F ++ L H+ H + P
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMP 94
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHT---GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
+ C CGK + R NL H + EQ + C C+ +F L+ H+ + H E P
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS-HTGEMP 94
Query: 288 FKCPLCDRCFGQQTNLDRHLKK 309
+KC C + F Q+ +L H+ K
Sbjct: 95 YKCSSCSQQFMQKKDLQSHMIK 116
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 230 RYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 280
+Y C+ CG + + L +H+RTHT +PY C YC SF NL +H+++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 259 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLK 308
Y C+ C S L++H+R H +P+ C C+ F + NL +H+K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 251 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE---KPFKCPLCDRCFGQQTNLDRHL 307
RTHTGE+PY C +C+++F L H + H+ F C C + F ++ + RH
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 308 KKHEADGPTILDDRNGG 324
GP ++ N G
Sbjct: 68 D--NCAGPDGVEGENSG 82
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 252 THTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE-KPFKCPLCDRCFGQQTNLDRHLK 308
T GE Y+CK C R ++ SN RH H + K + CP C + F ++ N+ H+K
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 224 TGKPKDRYACKFCGKVFPRSANLTRHLRTHTGE--QPYKCKYCERSFSISSNLQRHVRNI 281
T + + Y CK C +V+ +N RH T + Y C +C + F+ N+ HV+ I
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 282 H 282
H
Sbjct: 64 H 64
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C +CGK F SA L RH R HTGE+P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY C YC ++F +S+ L RH R IH EKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQR-IHTGEKP 40
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+ C C + FG L RH + H + P+
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPS 41
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 231 YACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRH 277
Y C F CGK F + L H +HT + PY+C + C++ FS+ S L+RH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 52
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 259 YKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPL--CDRCFGQQTNLDRHLKKHEADG 314
Y C + C ++F + L+ H + H ++ P++CP CD+ F + L RH K H A
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRHEKVH-AGY 59
Query: 315 PTILDD 320
P DD
Sbjct: 60 PCKKDD 65
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 231 YACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRH 277
Y C F CGK F + L H +HT + PY+C + C++ FS+ S L+RH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 52
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 259 YKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPL--CDRCFGQQTNLDRHLKKHEADG 314
Y C + C ++F + L+ H + H ++ P++CP CD+ F + L RH K H A
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH-AGY 59
Query: 315 PTILDD 320
P DD
Sbjct: 60 PCKKDD 65
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 230 RYACKFCGKVFPRSANLTRHLRTHTGEQP 258
RY C CGKVF R++ L++H + HTGE+P
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+ YKC C + FS +S L +H + IH EKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQH-QKIHTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 221 SNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPY 259
S ++G+ + + AC+ CGK+F +L RH +H+GE+PY
Sbjct: 3 SGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F + ANLT+H R HTGE+P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY+C C ++F+ +NL +H R IH EKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQR-IHTGEKP 40
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP++C C + F Q+ NL +H + H + P+
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPS 41
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGKVF ++++LT H R HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC C + F+ +S+L H R IH EKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWR-IHTGEKP 40
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+KC C + F Q ++L H + H + P+
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPS 41
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%)
Query: 229 DRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 285
+ + C CG+ F RHLR Q + CKYC +F S L RH+ H E
Sbjct: 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE 83
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKK 309
+ + C C SF+ +RH+R +H + F C C F L RH+ K
Sbjct: 27 ECHLCPVCGESFASKGAQERHLRLLH-AAQVFPCKYCPATFYSSPGLTRHINK 78
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y CK CGK F ++ +L +H R HTGE+P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY+CK C ++FS +++L +H R +H EKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQR-VHTGEKP 40
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP++C C + F Q T+L +H + H + P+
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKPS 41
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F +++ L RH R HTGE+P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
+PY+C C ++FS +S L RH R +H EKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQR-VHTGEKP 40
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
KP++C C + F Q + L RH + H + P+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPS 41
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F +++ L RH R HTGE+P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC C ++FS +S L RH R IH EKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQR-IHTGEKP 40
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+KC C + F Q + L RH + H + P+
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPS 41
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+ Y+C+YCE+ F+ SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGKVF ++ L+RH R HTGE+P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC C + F +S L RH R IH EKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQR-IHTGEKP 40
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+KC C + F + L RH + H + P+
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPS 41
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGKVF R+++L RH HTGE+P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC C + F +S+L RH + IH EKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARH-QLIHTGEKP 40
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+KC C + F + ++L RH H + P+
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKPS 41
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ CK CGK F ++ +L HLR HTGE+P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKPFKC C + F Q +L HL+ H + P+
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPS 41
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+P+KCK C ++F + +L H+R IH EKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLR-IHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F + + L+ H RTHTGE+P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY C C ++FS S L H R H EKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQR-THTGEKP 40
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+ C C + F Q++ L H + H + P+
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPS 41
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F + L H+RTHTGE+P
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
+G +PY C C ++F S L H+R H EKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRT-HTGEKP 38
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F R + L H R HTGE+P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGKVF ++++L RH R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC C + F+ +S+L RH R +H KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARH-RRVHTGGKP 40
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+KC C + F Q ++L RH + H P+
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPS 41
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F +NL +H + HTGE+P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY C C ++F+ SNL +H + IH EKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKH-QKIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
E+P+ C +C + F ++NL +H K H + P+
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPS 41
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGKVF ++++L RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC C + F+ +S+L RH R IH EKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRH-RGIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+KC C + F Q ++L RH H + P+
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPS 41
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F +S++L H R HTGE+P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+ YKC C + FS SS+LQ H R +H EKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQR-VHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGKVF ++++L RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC C + F+ +S+L RH R IH EKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARH-RGIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+KC C + F Q ++L RH H + P+
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPS 41
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGKVF ++++L RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
++PYKC C + F+ +S+L RH R IH EKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARH-RGIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
+KP+KC C + F Q ++L RH H + P+
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKPS 41
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGE 256
Y+C CGK F SA+L +HLR HT E
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKE 285
E+PY C C ++F +S++L +H+R +H +E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLR-VHTQE 38
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
EKP+ C +C + F +L++HL+ H +
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F + L H+RTH+GE+P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY C C ++FS S L H+R H+ EKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRT-HSGEKP 40
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+ C C + F ++ L H++ H + P+
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPS 41
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F + ++L RH R HTGE+P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY C C +SF S+L RH R IH EKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRH-RRIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+ C C + F Q+++L+RH + H + P+
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPS 41
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C CGK F +SA+L +H R HTGE+P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+P+KC C +SF S++L +H R IH EKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQR-IHTGEKP 40
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 36.6 bits (83), Expect = 0.027, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 233 CKFCGKVFPRSANLTRHLRTHTGEQ 257
C+ CGK F S NL RHLR H+GE+
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 258 PYKCKYCERSFSISSNLQRHVRNIHNKEK 286
P KC+ C + F+ S NL+RH+R IH+ EK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLR-IHSGEK 29
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F R L H RTH GE+P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY C C ++F+I SNL +H + IH K+KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKH-QKIHTKQKP 40
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F +NL +H + HT ++P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+ C C + F ++NL +H K H P+
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKPS 41
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 221 SNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGE 256
S ++G + Y C CGK F R++ L H RTH+GE
Sbjct: 3 SGSSGTREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPL 292
+PY C+ C + FS +L H++ +H E+P KC +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 224 TGKPKDRYACKFCGKVFPRSANLTRHLR-THTGEQPYKCK 262
GKP Y C+ CGK F R +L H++ HT E+P+KC+
Sbjct: 9 VGKP---YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC+ C ++F +SS+L +H ++H+ E+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQH-HSVHSGERP 40
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C+ CGK F S++L +H H+GE+P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+KC +C + F ++L +H H + P+
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERPS 41
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 35.8 bits (81), Expect = 0.043, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKHEADG 314
K KCP CD+ F Q NL HLK H ADG
Sbjct: 1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG 29
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y CK CGK F R+ L +H R H+GE+P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+ Y CK C +SFS + L +H R +H+ EKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHER-LHSGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C CGKVF NL H + HTGE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
E PF C C + F +TNL H K H + P+
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPS 41
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGE 256
Y C+ CGK F +S+ L+ H R HTGE
Sbjct: 11 YVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 285
+GE+PY C+ C ++F+ SS L H R +H E
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIH-RRVHTGE 36
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C C K F A+LT+H R H+GE+P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY+C C ++FS ++L +H R +H+ EKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQR-VHSGEKP 40
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP++C +C + F +L +H + H + P+
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPS 41
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C+ CGK F + L H R HTGE+P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY C+ C ++F S LQ H R IH EKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQR-IHTGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 221 SNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQP 258
S ++G + + C CGK F SA+L++H H GE P
Sbjct: 3 SGSSGTKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
T E P+KC C ++FS S++L +H + IH E P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKH-QLIHAGENP 40
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 284 KEKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
KE PFKC C + F +L +H H + P+
Sbjct: 9 KEHPFKCNECGKTFSHSAHLSKHQLIHAGENPS 41
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGKVF ++++L H R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC C + F+ +S+L H R IH KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQR-IHTGVKP 40
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+KC C + F Q ++L H + H P+
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPS 41
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 228 KDRYACKFCGKVFPRSANLTRHLRTHTGEQP 258
K + C C K F +S++LT H R HTGE+P
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 259 YKCKYCERSFSISSNLQRHVRNIHNKEKP 287
+KC C+++F+ SS+L H R IH EKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQR-IHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F +NLT H HTGE+P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC C ++F SNL H + IH EKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTH-QVIHTGEKP 40
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+KC C + F +NL H H + P+
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPS 41
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y CK CGK F ++ L +H R H+GE+P
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY CK C +SF +S L +H R +H+ EKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQR-VHSGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC C +SF S+L H R IH EKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKP 40
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C C K F ++LT H R HTGE+P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+KC +C + F ++L H + H + P+
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPS 41
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.085, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y CK C K F + A+L +H +THTGE+P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP++C +C + F Q+ +L +H K H + P+
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPS 41
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY+CK C ++F+ ++L +H + H EKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQH-QKTHTGEKP 40
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+ Y+C+YCE + SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKHSKEK 30
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 244 ANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 283
A L H R H ++P+KC YC SNL +H++ H
Sbjct: 23 AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 274 LQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD--GPT 316
L+ H R IH ++PFKC C Q +NL +H+KK D GP+
Sbjct: 25 LRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 235 FCGKVFPRSANLTRHLRTHTGEQ 257
+CGK F RS L RH RTHTGE+
Sbjct: 9 YCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F + + L H + HTGE+P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY+C C +SF+ S L H + IH EKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVH-QQIHTGEKP 40
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP++C +C + F +++ L H + H + P+
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPS 41
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
T E+P++C C++SF S L H R IH EKP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSH-RMIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKPF+C CD+ F Q++ L+ H H + P+
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKPS 41
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGE 256
Y C CGK F R L H RTH GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F + +L H+R HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP++C C + F Q+ +L H++ H GP+
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY+C C ++FS +L H+R +H P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGP 39
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 232 ACKFCGKVFPRSANLTRHLRTHTGEQP 258
C CGK F +S+ L++H R H+GE+P
Sbjct: 12 VCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C CGK F +++N +H R HTGE+P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+ Y+C+YCE + SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSKEK 30
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKPFKC +C + F ++ L+RH H A+ P+
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPS 41
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+P+KC C +SF S L RH +H EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSM-VHTAEKP 40
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C CGK F + L RH HT E+P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+ Y+C+YCE + SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKHSKEK 30
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C CGK + + +LT+H R HTGE+P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKPFKC C + + Q+ +L +H + H + P+
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPS 41
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+P+KC C +S++ +L +H R +H EKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQR-VHTGEKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 233 CKFCGKVFPRSANLTRHLRTHTGEQ 257
C CGK F ++++L H+R HTGE+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F +NL H + HTGE+P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY+C C ++F+ SNL H + IH EKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTH-QKIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP++C C + F ++NL H K H + P+
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPS 41
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F ++L H R+HTGE+P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+ Y+C+YCE + SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F ++LT H HTGE+P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
+PY C C ++FS+ S+L H + IH EKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTH-QVIHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+P++C C +SFSISS L H R IH EKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQR-IHTGEKP 40
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C CGK F S+ L H R HTGE+P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C C K F +NL H RTHTGE+P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+P++C C+++F+ SNL H R H EKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQR-THTGEKP 40
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKPF+C C + F ++NL H + H + P+
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPS 41
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C+ CGK F ++++L H R HTGE+P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+P++C+ C + F+ +S+L H R +H EKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQR-VHTGEKP 40
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKPF+C C + F Q ++L H + H + P+
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPS 41
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y CK CGK F + +L H R HTG P
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
+GE+PY+CK C +SFS +L H R +H P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHER-LHTGSGP 38
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 283 NKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
+ EKP++C C + F Q+ +L H + H GP+
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPS 39
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F +++ T+H R HTG++P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC C ++F +S+ +H R +H ++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQR-LHTGQRP 40
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+KC C + FG ++ +H + H P+
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPS 41
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 221 SNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQ 257
S ++G + Y C CGK F +NLT H HTGE+
Sbjct: 3 SGSSGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
T E+PYKC C ++F SNL H + IH EK
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTH-QVIHTGEK 39
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 283 NKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
KEKP+KC C + F ++NL H H +
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F + + L+ H R H GE+P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+PY C +C+R F+ LQRHVR IH EK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVR-IHTGEK 30
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
Y C C + F L RH+R HTGE+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C+ CGK F +++ L H R HTGE+P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+P+KC+ C + F+ +S L H R +H EKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQR-VHTGEKP 40
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKPFKC C + F Q + L H + H + P+
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPS 41
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F R +L H R HTG +P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+KC C + F + T+L+ H + H P+
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPS 41
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC C ++F ++L H R IH +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEH-RRIHTGYRP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F + + L H R HTGE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY+C C +SF S L H R IH E P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQR-IHTGENP 40
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGE 256
Y C CGKVF R L H +TH+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 223 NTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQ 257
++G + C++C KVF +L HLR HT E+
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 259 YKCKYCERSFSISSNLQRHVRNIHNKEK 286
+ C+YC + F +LQ H+R IH EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLR-IHTNEK 36
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
+ CK C + F RS +L H RTHTGE+
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+P++CK C+R FS S +L+ H R H EK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRT-HTGEK 29
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 33.1 bits (74), Expect = 0.30, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C+ CGK F + +LT H R HTG P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F S LT+H THT E+P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
+PY+C C +SFS S L +H H +EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWIT-HTREKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY+C C ++FS+ S+L H + IH +KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTH-QAIHTGKKP 40
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F ++LT H HTG++P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C CGK F R + L+ H + HTGE+P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGE 256
Y C CGK F + L H RTHTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F +L+ H R H+G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PY+C C ++FS +L H R IH+ +KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQR-IHSGKKP 40
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP++C +C + F + +L H + H P+
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPS 41
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGE 256
Y C C K F +NL H RTHTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVR 279
E+PY+C C+++F+ SNL H R
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQR 33
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
Y C CGK F R + L H ++HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
+ C CGK F NL H R HTGE+
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
++P++C +C +SF NL H R IH EK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQR-IHTGEK 39
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C+ CGK + NL H + HTGE+P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+KC C + + + NLD H K H + P+
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPS 41
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC+ C + ++ NL H + +H E+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQK-VHTGERP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C CGK F L +H R HTGE+P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+P+ C C ++FS L +H R IH EKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQH-RRIHTGEKP 40
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKPF C C + F L++H + H + P+
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPS 41
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKH---EADGPT 316
E+PFKC C + FG++++L HL+ H ++ GP+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
E+P+KC C + F S+L H+R +H++EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLR-LHSREK 39
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
+ C CGK F R ++L HLR H+ E+
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+ +KC+ C+ FS +S+L+ H +N+H EKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLH-QNVHVGEKP 40
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EK +KC CD CF Q ++L H H + P+
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKPS 41
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
Y C+ CGK + R NL H R H GE+
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
EKP+KC C + + ++ NLD H + H +
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 231 YACKF--CGKVFPRSANLTRHLRTHTGEQP 258
+AC + CG F RS L+RH R+H+G +P
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C CGK F ++L H TH+GE+P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC C ++F S+L H + H+ EKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIH-QATHSGEKP 40
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 258 PYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
PYKC CE+SFS L H R +H +EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQR-MHTREKP 40
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 32.0 bits (71), Expect = 0.67, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 228 KDRYACKF--CGKVFPRSANLTRHLRTHTGEQ 257
K ++ C CGKV+ ++++L HLR HTGE+
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 18/132 (13%)
Query: 90 NRNLILRSPTPSENLEVNYRSSPASTKDELQVQDDDR-----SSPPNIKSRSLSTYPVLF 144
+R+L R+ SE+ V S TK+ QD + ++P ++ + ST ++
Sbjct: 312 HRDLAARNVLVSED-NVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVW 370
Query: 145 PHPVMLEAMYR----------ARDKVPRLPLPYSMNSPPGYPGRPAYPFINSGLLNGHPI 194
++L +Y +D VPR+ Y M++P G P PA + +
Sbjct: 371 SFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCP--PAVYDVMKNCWHLDAA 428
Query: 195 QSPTIDLIRSQL 206
PT +R QL
Sbjct: 429 TRPTFLQLREQL 440
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C+ CGK F ++ L H R HTGE P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+P++C+ C +SFS +S L H R IH E P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQR-IHTGENP 40
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 32.0 bits (71), Expect = 0.80, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
+ C+ C + F R +L RH R+HT E+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.5 bits (62), Expect = 8.9, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 288 FKCPLCDRCFGQQTNLDRHLKKH 310
F C +C R F +Q +L RH + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
KP+KCP C + NL+ HL+KH +
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 221 SNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQ 257
S ++GKP Y C C ANL HLR HTGE+
Sbjct: 3 SGSSGKP---YKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 201 LIRSQLPPLANSPKQFQES---ISNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQ 257
LIR+ + L ++P+ ES K ++ C C F S +L +H+R E
Sbjct: 42 LIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRY--TEH 99
Query: 258 PYKCKYCERSFSISSNLQRHVRNIHN 283
C C++ F+ + + HV HN
Sbjct: 100 TKVCPVCKKEFTSTDSALDHVCKKHN 125
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.6 bits (70), Expect = 0.89, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
+ C+ C + F R L RH R+HT E+
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
Y C CGK F + L H R HTGE+
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+GE+PY C C + FS S L H R IH EK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQR-IHTGEK 37
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
Y CK C K F + +L +H R HTGE+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGE 256
Y C CGK F R ++ H R HTGE
Sbjct: 11 YVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKH 310
KPF+CP CDR F + +L H K+H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 251 RTHTGEQPYKCKYCERSFSISSNLQRH 277
R TG +P++C C+RSFS S +L H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALH 30
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
+ C+ C + F R L RH R+HT E+
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C CGK F R + L H + HTGE+P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKPFKC C + F +++ L+ H K H + P+
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPS 41
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+P+KC C + FS S L H +H EKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVH-HKLHTGEKP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGE 256
Y C CGK F + L H RTHTGE
Sbjct: 11 YECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
+GE+PY+C C ++F + S L H R + P
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGP 39
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C CG+ F ++L +H R HTGE+P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
+ ++C C R F++ S+L +H R IH EKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQR-IHTGEKP 40
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
Y C CGK + R +L H R HTGE+
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKH-EADGPT 316
E PFKC CDR F Q+ L +H + H GP+
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 228 KDRYACKFCGKVFPRSANLTRHLR-THTGEQP 258
K Y C CGK F ++ +L RH R HTGE+P
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
++PY+C C ++F +++L RH R H EKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHT 254
Y C CGK F R +LTRH + HT
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHT 36
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 221 SNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGE 256
S ++G K C+ CGK+F S+ L H H GE
Sbjct: 3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C C K F + L H R+HTG +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
+PY C C ++FS+ S L H R+ H KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRS-HTGVKP 40
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
KPFKC LC+ ++NL H+ +H +
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKH---EADGPT 316
E+P+ C C + FG+ ++L HLK+H ++ GP+
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
Y C CGK F R ++L HL+ H E+
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREK 39
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKH 310
KPF+CP CD F + +L H K+H
Sbjct: 6 KPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
+GE+P+ C CE++FS S L H + H +EKP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVH-QQTHAEEKP 38
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C+ CG F L HLR HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+ C +C F L HL+ H GP+
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGE 256
Y C CGK F + L H R HTGE
Sbjct: 11 YVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 28.1 bits (61), Expect = 9.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 285
+G++PY C C ++F + S L H R IH E
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHER-IHTGE 36
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKPF+C C F +L +HL+ HE P+
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPS 41
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+P++CK C +FS S +L +H+R+ H + P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRS-HERTDP 40
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 231 YACKFCGKVFPRSANLTRHLRTH 253
+ CK CG F S +L +HLR+H
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSH 35
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
+GE+PY C C ++F+ S L H + +H KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVH-KGVHTGVKP 38
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
EKP+KC C F Q +L H+ H GP+
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 28.5 bits (62), Expect = 7.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C+ CG F + A+L H+ HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 264 CERSFSISSNLQRHVRNIHNKEKPFKCP--LCDRCFGQQTNLDRHLKKH 310
C R FS L H + H +K F CP C + F + +L H+K H
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 259 YKCKYCERSFSISSNLQRHVR 279
YKC CERSF S L RH R
Sbjct: 2 YKCGLCERSFVEKSALSRHQR 22
Score = 28.5 bits (62), Expect = 6.9, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 288 FKCPLCDRCFGQQTNLDRHLKKHE 311
+KC LC+R F +++ L RH + H+
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C+ CGK F ++ H R+H+GE+P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 228 KDRYACKFCGKVFPRSANLTRHLRTHT 254
K + C+ C F AN RHL+ HT
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKH 310
++PF C +C F + N RHLK H
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVH 30
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+PY+C YC RSFS ++ RH+ H+ +K
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLET-HDTDK 30
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
KP++C C R F T+ RHL+ H+ D
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETHDTD 29
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
+GE+ ++C C ++FS S L H R IH E P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQR-IHTGENP 38
>pdb|2ELW|A Chain A, Solution Structure Of The 5th C2h2 Zinc Finger Of Mouse
Zinc Finger Protein 406
Length = 37
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 18/23 (78%)
Query: 261 CKYCERSFSISSNLQRHVRNIHN 283
C++C++ +S NL +H+R++H+
Sbjct: 12 CRFCKKKYSDVKNLIKHIRDMHD 34
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 231 YACKFCGKVFPRSANLTRHLRTH 253
Y C+ CGK F +S+ L H+R H
Sbjct: 3 YVCERCGKRFVQSSQLANHIRHH 25
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNK 284
E+ +KC CE++FS S L +H R IH +
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHER-IHTR 37
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
Y C+ CGK F +L H HTGE+P
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
E+PYKC+ C + F +L H +H EKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTH-HMVHTGEKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKHEA 312
EKP+ CP+C F ++ + H++ H+
Sbjct: 8 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
Y C CGK F + L H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|1ZX4|A Chain A, Structure Of Parb Bound To Dna
pdb|1ZX4|B Chain B, Structure Of Parb Bound To Dna
Length = 192
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 87 EDENRNLILRSPTPSENLEVNYRSSPASTKDEL-QVQDDDRSSPPNIKSRSLS 138
EDE +N ILR T +L + S S EL + +D DR + +K R+ S
Sbjct: 108 EDEVKNKILRLITKEASLLTDKGSKDKSVVTELWKFEDKDRFARKRVKGRAFS 160
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 257 QPYKCKYCERSFSISSNLQRHVR 279
+PY C YC SF NL +H++
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKHMK 23
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 28.5 bits (62), Expect = 7.9, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGE 256
+ C CGK F + L H R HTGE
Sbjct: 11 HECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|3IDQ|A Chain A, Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angstrom
Resolution
Length = 369
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 246 LTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCD---RCFGQQTN 302
+ L +Q + CK C+ + + + ++ K PLC R T
Sbjct: 270 IVNQLLFAENDQEHNCKRCQARWKMQKKYLDQIDELYEDFHVVKMPLCAGEIRGLNNLTK 329
Query: 303 LDRHLKKHE---ADGPTI--LDDRNGGIPSPSM 330
+ L K DG I L+D+ G +P S+
Sbjct: 330 FSQFLNKEYNPITDGKVIYELEDKEGLVPRGSL 362
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTG 255
Y+C CGK F + H R HTG
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2LVH|A Chain A, Solution Structure Of The Zinc Finger Afv1p06 Protein From
The Hyperthermophilic Archaeal Virus Afv1
Length = 59
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSIS 271
Y C CG F L RHL P Y +SFS+S
Sbjct: 11 YQCLRCGLTFRTKKQLIRHLVNTEKVNPLSIDYYYQSFSVS 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,452,248
Number of Sequences: 62578
Number of extensions: 542524
Number of successful extensions: 1587
Number of sequences better than 100.0: 192
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 528
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)