Query psy5888
Match_columns 447
No_of_seqs 422 out of 2432
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 20:48:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462|consensus 99.9 3E-24 6.4E-29 204.5 4.1 138 228-374 128-268 (279)
2 KOG2462|consensus 99.9 6.3E-23 1.4E-27 195.4 5.4 134 201-337 131-265 (279)
3 KOG1074|consensus 99.7 6.4E-18 1.4E-22 179.8 12.3 84 288-373 606-692 (958)
4 KOG3576|consensus 99.7 2.5E-18 5.4E-23 156.7 6.0 112 228-340 115-237 (267)
5 KOG1074|consensus 99.6 1.3E-15 2.8E-20 162.5 9.0 113 259-372 606-732 (958)
6 KOG3608|consensus 99.6 1.1E-15 2.4E-20 149.4 2.2 160 208-373 215-376 (467)
7 KOG3623|consensus 99.5 4.7E-15 1E-19 155.8 2.6 108 231-339 211-333 (1007)
8 KOG3623|consensus 99.5 4.8E-14 1E-18 148.3 9.4 81 256-337 892-972 (1007)
9 KOG3576|consensus 99.5 2E-15 4.4E-20 137.8 -1.3 118 255-373 114-236 (267)
10 KOG3608|consensus 99.4 3.9E-14 8.5E-19 138.7 3.3 136 231-373 178-345 (467)
11 PLN03086 PRLI-interacting fact 99.0 4.5E-10 9.8E-15 119.3 7.0 120 231-374 434-565 (567)
12 PLN03086 PRLI-interacting fact 99.0 5.4E-10 1.2E-14 118.7 5.5 100 228-335 451-560 (567)
13 PHA00733 hypothetical protein 98.9 1.1E-09 2.5E-14 95.9 4.0 82 228-312 38-124 (128)
14 PHA00733 hypothetical protein 98.8 3.5E-09 7.5E-14 92.8 3.3 95 244-340 26-124 (128)
15 KOG3993|consensus 98.7 3.3E-09 7.2E-14 106.6 0.2 52 316-373 431-482 (500)
16 PHA02768 hypothetical protein; 98.6 2.4E-08 5.2E-13 73.7 2.5 42 231-274 6-47 (55)
17 PHA02768 hypothetical protein; 98.5 7E-08 1.5E-12 71.3 2.2 42 288-331 6-47 (55)
18 KOG3993|consensus 98.3 6.8E-07 1.5E-11 90.3 4.5 115 259-378 268-385 (500)
19 PF13465 zf-H2C2_2: Zinc-finge 98.3 4.5E-07 9.8E-12 57.1 2.0 25 245-269 1-25 (26)
20 PF13465 zf-H2C2_2: Zinc-finge 98.0 3.1E-06 6.7E-11 53.3 1.4 24 274-298 2-25 (26)
21 PHA00616 hypothetical protein 98.0 3.1E-06 6.8E-11 59.7 1.5 34 230-263 1-34 (44)
22 PF05605 zf-Di19: Drought indu 97.8 2.3E-05 5.1E-10 58.1 4.3 49 259-310 3-52 (54)
23 PHA00616 hypothetical protein 97.8 7.1E-06 1.5E-10 57.9 1.4 33 287-319 1-33 (44)
24 PHA00732 hypothetical protein 97.8 1.6E-05 3.5E-10 63.8 3.1 44 230-279 1-45 (79)
25 PHA00732 hypothetical protein 97.8 2E-05 4.3E-10 63.3 3.5 48 258-311 1-48 (79)
26 PF05605 zf-Di19: Drought indu 97.6 0.00012 2.5E-09 54.4 4.6 50 230-282 2-53 (54)
27 COG5189 SFP1 Putative transcri 97.5 3.3E-05 7.2E-10 75.7 0.8 72 255-336 346-419 (423)
28 PF00096 zf-C2H2: Zinc finger, 97.3 0.00014 3E-09 44.0 1.7 23 231-253 1-23 (23)
29 COG5189 SFP1 Putative transcri 97.2 0.00017 3.6E-09 70.9 2.2 72 284-370 346-419 (423)
30 PF12756 zf-C2H2_2: C2H2 type 97.1 0.00022 4.8E-09 58.6 1.9 73 232-310 1-73 (100)
31 COG5236 Uncharacterized conser 97.1 0.0014 2.9E-08 65.3 7.4 136 231-377 152-309 (493)
32 PF00096 zf-C2H2: Zinc finger, 97.0 0.00025 5.4E-09 42.9 1.1 22 288-309 1-22 (23)
33 PF13894 zf-C2H2_4: C2H2-type 96.9 0.00077 1.7E-08 40.5 2.1 23 231-253 1-23 (24)
34 PF13894 zf-C2H2_4: C2H2-type 96.8 0.00077 1.7E-08 40.5 1.6 23 288-310 1-23 (24)
35 KOG2231|consensus 96.7 0.0026 5.6E-08 69.2 6.0 101 232-340 117-237 (669)
36 COG5048 FOG: Zn-finger [Genera 96.6 0.00075 1.6E-08 68.9 1.3 140 229-373 288-442 (467)
37 PF09237 GAGA: GAGA factor; I 96.5 0.0014 3.1E-08 47.5 1.7 41 275-315 12-52 (54)
38 PF12756 zf-C2H2_2: C2H2 type 96.4 0.0007 1.5E-08 55.6 -0.6 22 351-372 52-73 (100)
39 PF13912 zf-C2H2_6: C2H2-type 96.4 0.0016 3.5E-08 40.9 1.2 24 231-254 2-25 (27)
40 KOG2231|consensus 96.3 0.0056 1.2E-07 66.7 5.5 76 260-339 117-206 (669)
41 PF13912 zf-C2H2_6: C2H2-type 96.2 0.0019 4.1E-08 40.5 1.0 23 288-310 2-24 (27)
42 smart00355 ZnF_C2H2 zinc finge 95.7 0.011 2.3E-07 35.8 2.7 23 231-253 1-23 (26)
43 PF09237 GAGA: GAGA factor; I 95.6 0.013 2.8E-07 42.5 3.2 31 228-258 22-52 (54)
44 PRK04860 hypothetical protein; 95.6 0.0066 1.4E-07 55.3 2.0 40 229-272 118-157 (160)
45 smart00355 ZnF_C2H2 zinc finge 95.5 0.011 2.4E-07 35.7 2.1 24 288-311 1-24 (26)
46 KOG2482|consensus 95.1 0.012 2.5E-07 58.8 2.1 141 229-370 143-355 (423)
47 KOG1146|consensus 95.0 0.0093 2E-07 68.6 1.3 77 233-309 439-540 (1406)
48 PRK04860 hypothetical protein; 95.0 0.015 3.2E-07 53.1 2.3 37 287-327 119-155 (160)
49 COG5236 Uncharacterized conser 94.9 0.0095 2.1E-07 59.4 0.9 101 258-371 151-273 (493)
50 PF12874 zf-met: Zinc-finger o 94.4 0.019 4.2E-07 35.1 1.1 22 231-252 1-22 (25)
51 PF13909 zf-H2C2_5: C2H2-type 94.3 0.023 5E-07 34.5 1.3 23 288-311 1-23 (24)
52 KOG2785|consensus 94.0 0.097 2.1E-06 53.2 5.8 148 230-377 3-248 (390)
53 PF13909 zf-H2C2_5: C2H2-type 94.0 0.041 9E-07 33.4 1.9 23 231-254 1-23 (24)
54 PF12874 zf-met: Zinc-finger o 93.7 0.027 5.8E-07 34.5 0.8 22 288-309 1-22 (25)
55 KOG1146|consensus 93.4 0.042 9.1E-07 63.5 2.2 102 260-371 438-540 (1406)
56 PF12171 zf-C2H2_jaz: Zinc-fin 92.9 0.029 6.2E-07 35.3 -0.0 21 231-251 2-22 (27)
57 COG5048 FOG: Zn-finger [Genera 92.6 0.072 1.6E-06 54.3 2.5 138 203-340 292-443 (467)
58 KOG2482|consensus 92.3 0.099 2.1E-06 52.4 2.8 111 229-339 194-358 (423)
59 PF12171 zf-C2H2_jaz: Zinc-fin 91.8 0.084 1.8E-06 33.1 1.1 21 259-279 2-22 (27)
60 KOG4173|consensus 91.4 0.065 1.4E-06 50.1 0.3 87 229-318 78-178 (253)
61 KOG2893|consensus 90.5 0.1 2.3E-06 49.7 0.8 49 231-283 11-59 (341)
62 TIGR00622 ssl1 transcription f 89.4 0.7 1.5E-05 39.5 4.9 91 231-339 2-105 (112)
63 PF13913 zf-C2HC_2: zinc-finge 89.1 0.35 7.6E-06 30.0 2.2 20 231-251 3-22 (25)
64 KOG4167|consensus 89.0 0.52 1.1E-05 51.7 4.7 28 227-254 789-816 (907)
65 PF13913 zf-C2HC_2: zinc-finge 88.4 0.37 8.1E-06 29.8 1.9 19 289-308 4-22 (25)
66 smart00451 ZnF_U1 U1-like zinc 87.9 0.4 8.6E-06 31.6 2.0 23 230-252 3-25 (35)
67 KOG4173|consensus 87.9 0.12 2.7E-06 48.2 -0.7 77 257-337 78-168 (253)
68 KOG2893|consensus 86.1 0.24 5.3E-06 47.3 0.2 41 261-306 13-53 (341)
69 PF12013 DUF3505: Protein of u 85.0 1 2.2E-05 38.0 3.5 25 288-312 81-109 (109)
70 KOG4377|consensus 83.8 1.4 3E-05 45.5 4.3 28 348-375 402-429 (480)
71 PF09538 FYDLN_acid: Protein o 83.3 0.89 1.9E-05 38.7 2.4 15 257-271 25-39 (108)
72 smart00451 ZnF_U1 U1-like zinc 82.5 0.87 1.9E-05 29.9 1.7 22 258-279 3-24 (35)
73 PF09538 FYDLN_acid: Protein o 82.2 1.1 2.3E-05 38.2 2.5 30 288-328 10-39 (108)
74 cd00350 rubredoxin_like Rubred 80.9 1 2.2E-05 29.8 1.5 11 231-241 2-12 (33)
75 PF09986 DUF2225: Uncharacteri 80.0 0.6 1.3E-05 44.6 0.2 13 288-300 49-61 (214)
76 KOG1842|consensus 77.8 2.2 4.7E-05 44.5 3.4 29 226-254 11-39 (505)
77 COG4049 Uncharacterized protei 75.6 1.1 2.4E-05 33.2 0.5 27 284-310 14-40 (65)
78 PF12013 DUF3505: Protein of u 75.4 4 8.7E-05 34.4 4.0 53 229-282 10-108 (109)
79 TIGR02300 FYDLN_acid conserved 74.5 2.4 5.2E-05 37.0 2.3 13 287-299 26-38 (129)
80 PF09986 DUF2225: Uncharacteri 74.1 0.84 1.8E-05 43.6 -0.6 13 316-328 49-61 (214)
81 KOG2186|consensus 70.7 2.3 4.9E-05 41.3 1.4 47 230-279 3-49 (276)
82 PF05443 ROS_MUCR: ROS/MUCR tr 70.6 2.2 4.8E-05 37.6 1.3 26 229-257 71-96 (132)
83 TIGR02300 FYDLN_acid conserved 70.6 3.7 8E-05 35.8 2.6 32 288-330 10-41 (129)
84 PRK04023 DNA polymerase II lar 69.1 5.3 0.00011 45.9 4.1 23 229-267 625-647 (1121)
85 TIGR00622 ssl1 transcription f 68.7 9.8 0.00021 32.6 4.7 82 230-322 15-110 (112)
86 KOG2186|consensus 68.0 3 6.4E-05 40.5 1.6 49 258-310 3-51 (276)
87 KOG2785|consensus 66.6 6.3 0.00014 40.5 3.7 76 228-309 164-242 (390)
88 PRK00464 nrdR transcriptional 66.5 1.9 4.2E-05 39.0 0.0 12 288-299 29-40 (154)
89 COG4049 Uncharacterized protei 66.0 2.6 5.6E-05 31.4 0.6 24 256-279 15-38 (65)
90 KOG2071|consensus 65.9 5.2 0.00011 43.3 3.1 26 229-254 417-442 (579)
91 PF13719 zinc_ribbon_5: zinc-r 65.7 3.9 8.4E-05 27.7 1.4 12 260-271 4-15 (37)
92 TIGR02098 MJ0042_CXXC MJ0042 f 64.9 3.7 8E-05 27.7 1.2 10 260-269 4-13 (38)
93 COG5188 PRP9 Splicing factor 3 64.6 4.5 9.7E-05 41.0 2.2 27 229-255 237-265 (470)
94 TIGR00373 conserved hypothetic 63.4 7 0.00015 35.5 3.1 32 256-297 107-138 (158)
95 cd00729 rubredoxin_SM Rubredox 62.6 4.5 9.7E-05 27.0 1.2 25 230-266 2-26 (34)
96 PF02892 zf-BED: BED zinc fing 61.0 5.6 0.00012 27.7 1.6 24 228-251 14-41 (45)
97 PF13717 zinc_ribbon_4: zinc-r 60.8 5.8 0.00013 26.8 1.6 13 260-272 4-16 (36)
98 COG1592 Rubrerythrin [Energy p 60.6 5.3 0.00011 36.6 1.7 11 255-265 146-156 (166)
99 PRK06266 transcription initiat 58.8 5.4 0.00012 37.0 1.5 31 257-297 116-146 (178)
100 TIGR00373 conserved hypothetic 58.7 5.6 0.00012 36.1 1.6 33 228-269 107-139 (158)
101 PF04959 ARS2: Arsenite-resist 58.1 3.2 6.9E-05 39.7 -0.1 32 225-256 72-103 (214)
102 COG1997 RPL43A Ribosomal prote 58.0 3.9 8.5E-05 33.2 0.4 10 288-297 54-63 (89)
103 PRK00464 nrdR transcriptional 58.0 2.9 6.4E-05 37.9 -0.4 15 316-330 29-43 (154)
104 PRK06266 transcription initiat 57.9 8.8 0.00019 35.6 2.8 30 287-325 117-146 (178)
105 smart00531 TFIIE Transcription 57.2 8.9 0.00019 34.3 2.6 36 257-297 98-133 (147)
106 COG2888 Predicted Zn-ribbon RN 56.0 7.5 0.00016 29.3 1.6 12 258-269 27-38 (61)
107 smart00614 ZnF_BED BED zinc fi 55.6 8.8 0.00019 27.6 1.9 25 229-253 17-47 (50)
108 PF06524 NOA36: NOA36 protein; 55.1 12 0.00026 36.6 3.2 80 253-334 137-228 (314)
109 PRK00398 rpoP DNA-directed RNA 54.5 3.7 8.1E-05 29.1 -0.2 11 231-241 4-14 (46)
110 COG1592 Rubrerythrin [Energy p 54.1 7.9 0.00017 35.5 1.8 13 282-294 144-156 (166)
111 PRK14890 putative Zn-ribbon RN 53.4 8 0.00017 29.2 1.4 10 258-267 25-34 (59)
112 smart00659 RPOLCX RNA polymera 53.1 8.7 0.00019 27.2 1.5 27 231-268 3-29 (44)
113 TIGR02605 CxxC_CxxC_SSSS putat 52.9 3.9 8.4E-05 29.6 -0.3 11 231-241 6-16 (52)
114 COG4957 Predicted transcriptio 52.0 8 0.00017 34.0 1.4 26 229-257 75-100 (148)
115 PF02176 zf-TRAF: TRAF-type zi 50.8 6 0.00013 29.2 0.4 39 231-270 10-54 (60)
116 COG1996 RPC10 DNA-directed RNA 50.4 7.8 0.00017 28.2 0.9 28 230-267 6-33 (49)
117 KOG1924|consensus 50.1 68 0.0015 36.3 8.2 9 67-75 448-456 (1102)
118 smart00531 TFIIE Transcription 49.6 13 0.00028 33.2 2.4 36 286-325 98-133 (147)
119 KOG4124|consensus 49.5 4 8.7E-05 41.3 -0.9 28 126-153 217-244 (442)
120 PF04959 ARS2: Arsenite-resist 49.1 8.4 0.00018 36.8 1.2 26 286-311 76-101 (214)
121 PRK03564 formate dehydrogenase 48.9 5.3 0.00011 40.3 -0.2 34 229-265 186-219 (309)
122 KOG2593|consensus 48.0 14 0.0003 38.7 2.6 35 256-294 126-160 (436)
123 COG1198 PriA Primosomal protei 47.8 9.8 0.00021 42.9 1.6 49 259-324 436-484 (730)
124 smart00834 CxxC_CXXC_SSSS Puta 47.6 6 0.00013 26.8 -0.0 11 259-269 6-16 (41)
125 TIGR01562 FdhE formate dehydro 47.2 7.3 0.00016 39.3 0.4 13 253-265 205-217 (305)
126 PRK14714 DNA polymerase II lar 47.0 20 0.00043 42.5 3.8 9 230-238 667-675 (1337)
127 KOG2807|consensus 46.7 17 0.00036 36.7 2.8 82 229-339 275-369 (378)
128 PF02176 zf-TRAF: TRAF-type zi 46.7 7.3 0.00016 28.7 0.3 41 256-298 7-53 (60)
129 PHA00626 hypothetical protein 45.6 8.3 0.00018 28.8 0.4 10 316-325 24-33 (59)
130 PF09723 Zn-ribbon_8: Zinc rib 45.4 5.8 0.00013 27.6 -0.4 10 259-268 6-15 (42)
131 PF10571 UPF0547: Uncharacteri 44.0 18 0.0004 22.6 1.7 7 318-324 17-23 (26)
132 KOG1701|consensus 43.7 11 0.00024 39.3 1.1 44 230-275 274-319 (468)
133 PF05443 ROS_MUCR: ROS/MUCR tr 43.4 13 0.00027 32.9 1.3 26 287-315 72-97 (132)
134 KOG1924|consensus 43.3 2.1E+02 0.0046 32.6 10.7 8 186-193 589-596 (1102)
135 COG4530 Uncharacterized protei 43.2 14 0.00031 31.3 1.5 12 257-268 25-36 (129)
136 KOG2593|consensus 42.4 15 0.00033 38.4 1.9 35 229-266 127-161 (436)
137 PRK09678 DNA-binding transcrip 42.0 7.4 0.00016 30.6 -0.3 13 287-299 27-41 (72)
138 TIGR01384 TFS_arch transcripti 41.8 5.3 0.00012 33.3 -1.3 13 258-270 16-28 (104)
139 KOG0696|consensus 41.0 14 0.0003 38.9 1.3 56 230-294 73-128 (683)
140 COG1198 PriA Primosomal protei 41.0 14 0.00031 41.6 1.6 49 231-296 436-484 (730)
141 smart00734 ZnF_Rad18 Rad18-lik 40.8 26 0.00056 21.8 2.1 19 232-251 3-21 (26)
142 PF04216 FdhE: Protein involve 40.3 2.4 5.3E-05 42.2 -4.2 75 231-324 173-247 (290)
143 KOG2071|consensus 40.0 23 0.00051 38.5 2.9 15 347-361 511-525 (579)
144 PF12907 zf-met2: Zinc-binding 39.2 6.4 0.00014 27.4 -1.0 12 273-284 19-30 (40)
145 PF14353 CpXC: CpXC protein 39.1 30 0.00066 29.8 3.0 20 315-334 38-57 (128)
146 KOG1280|consensus 39.1 23 0.00049 36.1 2.5 27 287-313 79-105 (381)
147 COG3677 Transposase and inacti 38.4 23 0.00051 31.0 2.2 14 287-300 53-66 (129)
148 KOG4124|consensus 38.3 9.7 0.00021 38.7 -0.3 50 285-334 347-417 (442)
149 PRK09678 DNA-binding transcrip 37.2 14 0.0003 29.1 0.5 17 314-330 26-44 (72)
150 KOG0782|consensus 35.8 8.8 0.00019 41.4 -1.0 27 273-300 240-266 (1004)
151 COG5151 SSL1 RNA polymerase II 35.3 26 0.00057 35.1 2.2 92 230-340 308-413 (421)
152 PF03604 DNA_RNApol_7kD: DNA d 35.2 27 0.00058 23.0 1.5 8 259-266 18-25 (32)
153 PF09845 DUF2072: Zn-ribbon co 34.3 29 0.00064 30.5 2.1 13 259-271 2-14 (131)
154 PF15135 UPF0515: Uncharacteri 34.1 41 0.00088 32.8 3.2 81 222-325 104-184 (278)
155 TIGR00595 priA primosomal prot 33.1 15 0.00032 39.7 0.1 34 231-265 214-247 (505)
156 KOG0696|consensus 32.6 11 0.00024 39.6 -0.9 61 254-324 69-130 (683)
157 PF13451 zf-trcl: Probable zin 31.3 24 0.00053 25.6 0.9 12 258-269 4-15 (49)
158 TIGR00595 priA primosomal prot 31.1 23 0.00051 38.2 1.2 14 282-295 235-248 (505)
159 PF09416 UPF1_Zn_bind: RNA hel 30.1 37 0.00081 30.7 2.1 12 258-269 14-25 (152)
160 PRK14873 primosome assembly pr 29.7 24 0.00052 39.5 1.0 8 316-323 423-430 (665)
161 KOG2461|consensus 29.7 92 0.002 32.6 5.3 43 249-292 322-364 (396)
162 PF08274 PhnA_Zn_Ribbon: PhnA 29.3 27 0.00058 22.7 0.8 9 314-322 18-26 (30)
163 PF05191 ADK_lid: Adenylate ki 29.0 15 0.00033 24.8 -0.4 11 231-241 2-12 (36)
164 COG0068 HypF Hydrogenase matur 29.0 10 0.00022 42.2 -2.0 57 233-297 126-183 (750)
165 PRK14873 primosome assembly pr 28.1 17 0.00037 40.7 -0.5 48 231-296 384-431 (665)
166 PF13878 zf-C2H2_3: zinc-finge 28.1 82 0.0018 21.8 3.1 25 230-254 13-39 (41)
167 PTZ00303 phosphatidylinositol 27.8 45 0.00099 37.6 2.7 12 289-300 462-473 (1374)
168 PF15269 zf-C2H2_7: Zinc-finge 27.5 69 0.0015 22.9 2.6 28 344-371 15-42 (54)
169 COG3091 SprT Zn-dependent meta 27.2 25 0.00055 31.7 0.6 33 287-324 117-149 (156)
170 COG5151 SSL1 RNA polymerase II 26.5 25 0.00054 35.3 0.4 76 286-371 321-410 (421)
171 PF12760 Zn_Tnp_IS1595: Transp 26.1 69 0.0015 22.5 2.6 7 259-265 19-25 (46)
172 PRK03824 hypA hydrogenase nick 25.8 25 0.00054 31.0 0.3 15 229-243 69-83 (135)
173 PF14758 NSP2_assoc: Non-essen 25.7 44 0.00096 30.7 1.8 12 67-78 156-167 (203)
174 COG3091 SprT Zn-dependent meta 25.7 29 0.00064 31.3 0.7 32 230-266 117-148 (156)
175 COG1655 Uncharacterized protei 25.5 15 0.00032 35.4 -1.3 26 228-253 17-42 (267)
176 PF09332 Mcm10: Mcm10 replicat 25.2 6.7 0.00014 40.1 -3.9 53 288-356 253-310 (344)
177 PRK14559 putative protein seri 25.0 82 0.0018 35.2 4.1 51 232-327 3-53 (645)
178 PF01927 Mut7-C: Mut7-C RNAse 24.5 55 0.0012 29.1 2.2 52 316-369 92-144 (147)
179 COG0068 HypF Hydrogenase matur 23.3 25 0.00053 39.3 -0.3 83 228-325 99-183 (750)
180 PRK12380 hydrogenase nickel in 22.8 38 0.00081 28.9 0.8 26 229-266 69-94 (113)
181 TIGR00100 hypA hydrogenase nic 22.3 36 0.00078 29.1 0.6 27 229-267 69-95 (115)
182 COG1327 Predicted transcriptio 22.0 25 0.00055 31.6 -0.4 12 260-271 30-41 (156)
183 PF15135 UPF0515: Uncharacteri 21.6 41 0.00089 32.8 0.8 71 243-327 92-167 (278)
184 KOG1701|consensus 21.5 25 0.00055 36.8 -0.6 15 229-243 301-315 (468)
185 PTZ00255 60S ribosomal protein 21.5 43 0.00093 27.6 0.8 12 287-298 54-65 (90)
186 PF13240 zinc_ribbon_2: zinc-r 21.3 46 0.001 20.1 0.7 6 261-266 16-21 (23)
187 KOG3408|consensus 20.5 47 0.001 28.8 0.9 22 258-279 57-78 (129)
188 KOG2807|consensus 20.4 1.2E+02 0.0027 30.7 3.9 73 230-322 290-374 (378)
189 TIGR00280 L37a ribosomal prote 20.3 41 0.00088 27.7 0.4 12 287-298 53-64 (91)
190 COG1655 Uncharacterized protei 20.2 22 0.00048 34.2 -1.2 16 257-272 18-33 (267)
191 KOG3408|consensus 20.1 48 0.001 28.7 0.9 23 230-252 57-79 (129)
192 KOG3002|consensus 20.0 1.3E+02 0.0029 30.3 4.1 76 228-309 78-161 (299)
No 1
>KOG2462|consensus
Probab=99.89 E-value=3e-24 Score=204.47 Aligned_cols=138 Identities=26% Similarity=0.499 Sum_probs=125.0
Q ss_pred CCCccCCCCCCccCChHHHHHHHHHhcC---CCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHH
Q psy5888 228 KDRYACKFCGKVFPRSANLTRHLRTHTG---EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLD 304 (447)
Q Consensus 228 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~---ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~ 304 (447)
..+|+|..||+.|.+..+|.+|..+|.. .+-+.|++|+|.|.+-..|+.|++ +|+ -+++|.+||+.|.+...|+
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHir-TH~--l~c~C~iCGKaFSRPWLLQ 204 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIR-THT--LPCECGICGKAFSRPWLLQ 204 (279)
T ss_pred CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhh-ccC--CCcccccccccccchHHhh
Confidence 4579999999999999999999999975 567999999999999999999999 787 4799999999999999999
Q ss_pred HHHhhhcCCCCcccCCCCCCCCChhhhhhccCCCCCCCCCCCchhhhccccccccCChhHHHHHHHhhcc
Q psy5888 305 RHLKKHEADGPTILDDRNGGIPSPSMIHNRCRPPSGILNDDSYFEEIRSFMGKVSADGNRLVQRVSSLSR 374 (447)
Q Consensus 305 ~Hlr~H~~ekp~~C~~C~k~f~s~~~l~~H~~~h~~~~~~~~~~~~~c~~Cgk~f~~~~~L~~H~~~~~~ 374 (447)
.|+|+|+|||||.|..|++.|...++|+-|++.|..+ +.| .|..|+|.|..++.|.+|.+.-..
T Consensus 205 GHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~----K~~--qC~~C~KsFsl~SyLnKH~ES~C~ 268 (279)
T KOG2462|consen 205 GHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDV----KKH--QCPRCGKSFALKSYLNKHSESACL 268 (279)
T ss_pred cccccccCCCCccCCcccchhcchHHHHHHHHhhcCC----ccc--cCcchhhHHHHHHHHHHhhhhccc
Confidence 9999999999999999999999999999999999853 333 569999999999999999775443
No 2
>KOG2462|consensus
Probab=99.87 E-value=6.3e-23 Score=195.44 Aligned_cols=134 Identities=27% Similarity=0.537 Sum_probs=113.2
Q ss_pred hhhccCCCCCCCchhhhhcccccCCC-CCCCccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhh
Q psy5888 201 LIRSQLPPLANSPKQFQESISNNTGK-PKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVR 279 (447)
Q Consensus 201 ~~~~~~p~~~~s~~~~~~~~~~~~~~-~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~ 279 (447)
..|..|.........+..|...+... .++-+.|++|+|.|.+...|++|+|+|+ -+++|.+|||.|.+.+-|+-|+|
T Consensus 131 ~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiR 208 (279)
T KOG2462|consen 131 YKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIR 208 (279)
T ss_pred eeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccc
Confidence 44555655544443333332222211 1467999999999999999999999997 67999999999999999999999
Q ss_pred hhccCCCCCCCCCCCcccCCchhHHHHHhhhcCCCCcccCCCCCCCCChhhhhhccCC
Q psy5888 280 NIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGPTILDDRNGGIPSPSMIHNRCRP 337 (447)
Q Consensus 280 ~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~f~s~~~l~~H~~~ 337 (447)
.|+|||||.|+.|+|.|.++++|+.||++|.+.|.|.|..|+|.|...+.|..|...
T Consensus 209 -THTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 209 -THTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES 265 (279)
T ss_pred -cccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence 899999999999999999999999999999999999999999999999999999754
No 3
>KOG1074|consensus
Probab=99.75 E-value=6.4e-18 Score=179.85 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=75.7
Q ss_pred CCCCCCCcccCCchhHHHHHhhhcCCCCcccCCCCCCCCChhhhhhccCCCCCCCCCCCchhhhcc---ccccccCChhH
Q psy5888 288 FKCPLCDRCFGQQTNLDRHLKKHEADGPTILDDRNGGIPSPSMIHNRCRPPSGILNDDSYFEEIRS---FMGKVSADGNR 364 (447)
Q Consensus 288 ~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~f~s~~~l~~H~~~h~~~~~~~~~~~~~c~---~Cgk~f~~~~~ 364 (447)
-.|-+|-|...-.+.|+.|.|+|+||+||+|.+|++.|.++..|+.|+-.|.....-...|.| . +|-+.|...-.
T Consensus 606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~Sc--P~~~ic~~kftn~V~ 683 (958)
T KOG1074|consen 606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSC--PSTFICQKKFTNAVT 683 (958)
T ss_pred cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccC--Cchhhhccccccccc
Confidence 579999999999999999999999999999999999999999999999999877665555544 7 99999999999
Q ss_pred HHHHHHhhc
Q psy5888 365 LVQRVSSLS 373 (447)
Q Consensus 365 L~~H~~~~~ 373 (447)
|-+|++.|.
T Consensus 684 lpQhIriH~ 692 (958)
T KOG1074|consen 684 LPQHIRIHL 692 (958)
T ss_pred ccceEEeec
Confidence 999987655
No 4
>KOG3576|consensus
Probab=99.73 E-value=2.5e-18 Score=156.73 Aligned_cols=112 Identities=29% Similarity=0.617 Sum_probs=102.2
Q ss_pred CCCccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHH
Q psy5888 228 KDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHL 307 (447)
Q Consensus 228 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hl 307 (447)
...|.|.+|+|.|.-...|.+|++.|...+.|.|..||+.|....+|++|++ .|+|.+||+|..|++.|..+..|..|+
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~r-thtgvrpykc~~c~kaftqrcsleshl 193 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTR-THTGVRPYKCSLCEKAFTQRCSLESHL 193 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhc-cccCccccchhhhhHHHHhhccHHHHH
Confidence 4679999999999999999999999999999999999999999999999999 899999999999999999999999998
Q ss_pred hhhcC-----------CCCcccCCCCCCCCChhhhhhccCCCCC
Q psy5888 308 KKHEA-----------DGPTILDDRNGGIPSPSMIHNRCRPPSG 340 (447)
Q Consensus 308 r~H~~-----------ekp~~C~~C~k~f~s~~~l~~H~~~h~~ 340 (447)
+.-++ +|.|+|+.||++-.....+..|++.|+.
T Consensus 194 ~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp 237 (267)
T KOG3576|consen 194 KKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP 237 (267)
T ss_pred HHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence 76544 4668899999888887788888887774
No 5
>KOG1074|consensus
Probab=99.61 E-value=1.3e-15 Score=162.52 Aligned_cols=113 Identities=27% Similarity=0.405 Sum_probs=97.0
Q ss_pred ccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHHhhhcCCC----CcccC---CCCCCCCChhhh
Q psy5888 259 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADG----PTILD---DRNGGIPSPSMI 331 (447)
Q Consensus 259 ~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~H~~ek----p~~C~---~C~k~f~s~~~l 331 (447)
-.|.+|.|...-.+.|+.|++ .|+||+||+|.+||+.|..+.+|+.|+-+|...- .|.|+ +|-+.|.....|
T Consensus 606 NqCiiC~rVlSC~saLqmHyr-tHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~l 684 (958)
T KOG1074|consen 606 NQCIICLRVLSCPSALQMHYR-THTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTL 684 (958)
T ss_pred cceeeeeecccchhhhhhhhh-cccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccc
Confidence 668888888888888888998 7999999999999999999999999999997653 47899 999999999999
Q ss_pred hhccCCCCC-CCC------CCCchhhhccccccccCChhHHHHHHHhh
Q psy5888 332 HNRCRPPSG-ILN------DDSYFEEIRSFMGKVSADGNRLVQRVSSL 372 (447)
Q Consensus 332 ~~H~~~h~~-~~~------~~~~~~~~c~~Cgk~f~~~~~L~~H~~~~ 372 (447)
.+|+++|.. .+. +.......|.+|.+.|.+...|..|+..+
T Consensus 685 pQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~ 732 (958)
T KOG1074|consen 685 PQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQ 732 (958)
T ss_pred cceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhcc
Confidence 999999872 222 33445567899999999999999998765
No 6
>KOG3608|consensus
Probab=99.55 E-value=1.1e-15 Score=149.43 Aligned_cols=160 Identities=20% Similarity=0.336 Sum_probs=117.9
Q ss_pred CCCCCchhhhhcccccCCCCCCCccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhccCCCC
Q psy5888 208 PLANSPKQFQESISNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287 (447)
Q Consensus 208 ~~~~s~~~~~~~~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp 287 (447)
..+.....+-.++...+...+..|.|..|.|.|.++..|..|++.|. .-|+|+.|.-.....+.|.+|++..|...|+
T Consensus 215 ~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~dkp 292 (467)
T KOG3608|consen 215 ELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSKDKP 292 (467)
T ss_pred HHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh--hcccccccccCCCChHHHHHHHHhhhccCCC
Confidence 33334444444444444445556777777777777777777777775 3478888888888888888888888888888
Q ss_pred CCCCCCCcccCCchhHHHHHhhhcCCCCcccCC--CCCCCCChhhhhhccCCCCCCCCCCCchhhhccccccccCChhHH
Q psy5888 288 FKCPLCDRCFGQQTNLDRHLKKHEADGPTILDD--RNGGIPSPSMIHNRCRPPSGILNDDSYFEEIRSFMGKVSADGNRL 365 (447)
Q Consensus 288 ~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~~--C~k~f~s~~~l~~H~~~h~~~~~~~~~~~~~c~~Cgk~f~~~~~L 365 (447)
|+|..|.+.|.+..+|.+|...|. +-.|.|+. |.+.|.....+..|.+.++... ....+.|-.|.+.|++...|
T Consensus 293 fKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~---np~~Y~CH~Cdr~ft~G~~L 368 (467)
T KOG3608|consen 293 FKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGN---NPILYACHCCDRFFTSGKSL 368 (467)
T ss_pred ccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCC---CCCceeeecchhhhccchhH
Confidence 888888888888888888888776 67788886 8888888888888877766422 22233668999999999999
Q ss_pred HHHHHhhc
Q psy5888 366 VQRVSSLS 373 (447)
Q Consensus 366 ~~H~~~~~ 373 (447)
..|+..-+
T Consensus 369 ~~HL~kkH 376 (467)
T KOG3608|consen 369 SAHLMKKH 376 (467)
T ss_pred HHHHHHhh
Confidence 99986533
No 7
>KOG3623|consensus
Probab=99.51 E-value=4.7e-15 Score=155.84 Aligned_cols=108 Identities=21% Similarity=0.556 Sum_probs=96.5
Q ss_pred ccCCCCCCccCChHHHHHHHHHhc--CCCcccCCCCCCcccchhhHHHHhhhhccC-------------CCCCCCCCCCc
Q psy5888 231 YACKFCGKVFPRSANLTRHLRTHT--GEQPYKCKYCERSFSISSNLQRHVRNIHNK-------------EKPFKCPLCDR 295 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r~H~--~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~-------------~kp~~C~~C~k 295 (447)
..|++|.+.+.+...|+.|++..+ .+..|.|..|...|.++..|.+||. +|.. .+.|+|..||+
T Consensus 211 ltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~-~hkpg~dqa~sltqsa~lRKFKCtECgK 289 (1007)
T KOG3623|consen 211 LTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQ-LHKPGGDQAISLTQSALLRKFKCTECGK 289 (1007)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHH-hhcCCCcccccccchhhhccccccccch
Confidence 679999999999999999998543 2566999999999999999999998 6752 35699999999
Q ss_pred ccCCchhHHHHHhhhcCCCCcccCCCCCCCCChhhhhhccCCCC
Q psy5888 296 CFGQQTNLDRHLKKHEADGPTILDDRNGGIPSPSMIHNRCRPPS 339 (447)
Q Consensus 296 ~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~f~s~~~l~~H~~~h~ 339 (447)
.|..+.+|+.|+|+|.|||||.|+.|+|.|.....+-.|+...-
T Consensus 290 AFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSSKK 333 (1007)
T KOG3623|consen 290 AFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSSKK 333 (1007)
T ss_pred hhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccccc
Confidence 99999999999999999999999999999998888888875443
No 8
>KOG3623|consensus
Probab=99.50 E-value=4.8e-14 Score=148.30 Aligned_cols=81 Identities=22% Similarity=0.531 Sum_probs=72.4
Q ss_pred CCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHHhhhcCCCCcccCCCCCCCCChhhhhhcc
Q psy5888 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGPTILDDRNGGIPSPSMIHNRC 335 (447)
Q Consensus 256 ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~f~s~~~l~~H~ 335 (447)
+..|.|+.|+|.|.-.+.|.+|.- -|+|.+||+|.+|.+.|..+.+|..|+|.|.|||||.|++|+|.|.....+-+|+
T Consensus 892 ~gmyaCDqCDK~FqKqSSLaRHKY-EHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHM 970 (1007)
T KOG3623|consen 892 DGMYACDQCDKAFQKQSSLARHKY-EHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHM 970 (1007)
T ss_pred cccchHHHHHHHHHhhHHHHHhhh-hhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhh
Confidence 457999999999999999999987 7999999999999999999999999999999999999999999999888888887
Q ss_pred CC
Q psy5888 336 RP 337 (447)
Q Consensus 336 ~~ 337 (447)
..
T Consensus 971 NH 972 (1007)
T KOG3623|consen 971 NH 972 (1007)
T ss_pred cc
Confidence 54
No 9
>KOG3576|consensus
Probab=99.49 E-value=2e-15 Score=137.84 Aligned_cols=118 Identities=16% Similarity=0.326 Sum_probs=102.6
Q ss_pred CCCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHHhhhcCCCCcccCCCCCCCCChhhhhhc
Q psy5888 255 GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGPTILDDRNGGIPSPSMIHNR 334 (447)
Q Consensus 255 ~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~f~s~~~l~~H 334 (447)
+...|.|.+|+|.|....-|.+|++ .|...+.|-|..||+.|...-+|++|+|+|+|.+||+|..|++.|...-.|..|
T Consensus 114 d~d~ftCrvCgK~F~lQRmlnrh~k-ch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcslesh 192 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGLQRMLNRHLK-CHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESH 192 (267)
T ss_pred CCCeeeeehhhhhhhHHHHHHHHhh-hccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHH
Confidence 3456999999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC-----CCCCchhhhccccccccCChhHHHHHHHhhc
Q psy5888 335 CRPPSGIL-----NDDSYFEEIRSFMGKVSADGNRLVQRVSSLS 373 (447)
Q Consensus 335 ~~~h~~~~-----~~~~~~~~~c~~Cgk~f~~~~~L~~H~~~~~ 373 (447)
++.-|+.. .+....-.+|+.||.+....+.++.|++.++
T Consensus 193 l~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~h 236 (267)
T KOG3576|consen 193 LKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHH 236 (267)
T ss_pred HHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcC
Confidence 87655532 2222333477999999999999999987544
No 10
>KOG3608|consensus
Probab=99.44 E-value=3.9e-14 Score=138.68 Aligned_cols=136 Identities=22% Similarity=0.394 Sum_probs=100.0
Q ss_pred ccCCC--CCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhh----------------------------
Q psy5888 231 YACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN---------------------------- 280 (447)
Q Consensus 231 ~~C~~--Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~---------------------------- 280 (447)
+.|.+ |-+.|.++..|.+|+++|+++|-..|+.|+.-|.++..|..|.+.
T Consensus 178 ~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv 257 (467)
T KOG3608|consen 178 TMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHV 257 (467)
T ss_pred eeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHH
Confidence 55555 667777777777777777766655555555555555555555441
Q ss_pred -hccCCCCCCCCCCCcccCCchhHHHHHhh-hcCCCCcccCCCCCCCCChhhhhhccCCCCCCCCCCCchhhhccccccc
Q psy5888 281 -IHNKEKPFKCPLCDRCFGQQTNLDRHLKK-HEADGPTILDDRNGGIPSPSMIHNRCRPPSGILNDDSYFEEIRSFMGKV 358 (447)
Q Consensus 281 -~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~-H~~ekp~~C~~C~k~f~s~~~l~~H~~~h~~~~~~~~~~~~~c~~Cgk~ 358 (447)
.|.. -|+|+.|.......+.|.+|++. |..+|+|+|+.|.+.|.+...|..|...|.. ..+.|.-..|...
T Consensus 258 ~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~-----~~y~C~h~~C~~s 330 (467)
T KOG3608|consen 258 VRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSK-----TVYQCEHPDCHYS 330 (467)
T ss_pred HHhhh--cccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccc-----cceecCCCCCcHH
Confidence 2322 48899999989999999999876 8888999999999999999999999887763 3555544569999
Q ss_pred cCChhHHHHHHHhhc
Q psy5888 359 SADGNRLVQRVSSLS 373 (447)
Q Consensus 359 f~~~~~L~~H~~~~~ 373 (447)
|.....+.+|++.++
T Consensus 331 ~r~~~q~~~H~~evh 345 (467)
T KOG3608|consen 331 VRTYTQMRRHFLEVH 345 (467)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998655
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.01 E-value=4.5e-10 Score=119.29 Aligned_cols=120 Identities=13% Similarity=0.283 Sum_probs=87.9
Q ss_pred ccCCC--CCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHHh
Q psy5888 231 YACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLK 308 (447)
Q Consensus 231 ~~C~~--Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr 308 (447)
-.|+. ||..|. +..|..| +.|++|++.|. ...|..|+. .|. +++.|+ ||+.| .+..|..|++
T Consensus 434 V~Cp~~~Cg~v~~-r~el~~H---------~~C~~Cgk~f~-~s~LekH~~-~~H--kpv~Cp-Cg~~~-~R~~L~~H~~ 497 (567)
T PLN03086 434 VVCPHDGCGIVLR-VEEAKNH---------VHCEKCGQAFQ-QGEMEKHMK-VFH--EPLQCP-CGVVL-EKEQMVQHQA 497 (567)
T ss_pred eeCCcccccceee-ccccccC---------ccCCCCCCccc-hHHHHHHHH-hcC--CCccCC-CCCCc-chhHHHhhhh
Confidence 45774 888884 3344444 47999999985 577899988 453 689999 99755 5688999999
Q ss_pred hhcCCCCcccCCCCCCCCC----------hhhhhhccCCCCCCCCCCCchhhhccccccccCChhHHHHHHHhhcc
Q psy5888 309 KHEADGPTILDDRNGGIPS----------PSMIHNRCRPPSGILNDDSYFEEIRSFMGKVSADGNRLVQRVSSLSR 374 (447)
Q Consensus 309 ~H~~ekp~~C~~C~k~f~s----------~~~l~~H~~~h~~~~~~~~~~~~~c~~Cgk~f~~~~~L~~H~~~~~~ 374 (447)
+|..++++.|.+|++.|.. ...|..|...+. ...+ .|..||+.+..+ .+..|+...+.
T Consensus 498 thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG-----~rt~--~C~~Cgk~Vrlr-dm~~H~~~~h~ 565 (567)
T PLN03086 498 STCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICG-----SRTA--PCDSCGRSVMLK-EMDIHQIAVHQ 565 (567)
T ss_pred ccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhcC-----Ccce--EccccCCeeeeh-hHHHHHHHhhc
Confidence 9999999999999998852 235677766543 2333 459999977665 78888876554
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.96 E-value=5.4e-10 Score=118.72 Aligned_cols=100 Identities=14% Similarity=0.362 Sum_probs=64.4
Q ss_pred CCCccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccC---------
Q psy5888 228 KDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFG--------- 298 (447)
Q Consensus 228 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~--------- 298 (447)
++.+.|++|++.|. ...|..|+++|+ +++.|+ |++.| .+..|..|+. .|...+++.|.+|++.|.
T Consensus 451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~-thCp~Kpi~C~fC~~~v~~g~~~~d~~ 524 (567)
T PLN03086 451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQA-STCPLRLITCRFCGDMVQAGGSAMDVR 524 (567)
T ss_pred ccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhh-ccCCCCceeCCCCCCccccCccccchh
Confidence 34567777777774 566777777764 667777 77544 4566777766 577777777777777763
Q ss_pred -CchhHHHHHhhhcCCCCcccCCCCCCCCChhhhhhcc
Q psy5888 299 -QQTNLDRHLKKHEADGPTILDDRNGGIPSPSMIHNRC 335 (447)
Q Consensus 299 -~~~~L~~Hlr~H~~ekp~~C~~C~k~f~s~~~l~~H~ 335 (447)
....|..|...+ +.+++.|..|++.+... .+..|+
T Consensus 525 d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~ 560 (567)
T PLN03086 525 DRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQ 560 (567)
T ss_pred hhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHH
Confidence 134667776664 66777777777776543 234443
No 13
>PHA00733 hypothetical protein
Probab=98.89 E-value=1.1e-09 Score=95.88 Aligned_cols=82 Identities=26% Similarity=0.453 Sum_probs=64.3
Q ss_pred CCCccCCCCCCccCChHHHHHH--HH---HhcCCCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchh
Q psy5888 228 KDRYACKFCGKVFPRSANLTRH--LR---THTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTN 302 (447)
Q Consensus 228 ~k~~~C~~Cgk~F~~~~~L~~H--~r---~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~ 302 (447)
.+++.|.+|.+.|.....|..| ++ .+.++++|.|..|++.|.+...|..|++ .| +.+|.|.+|++.|.....
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r-~h--~~~~~C~~CgK~F~~~~s 114 (128)
T PHA00733 38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIR-YT--EHSKVCPVCGKEFRNTDS 114 (128)
T ss_pred hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHh-cC--CcCccCCCCCCccCCHHH
Confidence 4678899999888887777665 22 2344778999999999999999988887 55 346889999999999989
Q ss_pred HHHHHhhhcC
Q psy5888 303 LDRHLKKHEA 312 (447)
Q Consensus 303 L~~Hlr~H~~ 312 (447)
|..|+...|+
T Consensus 115 L~~H~~~~h~ 124 (128)
T PHA00733 115 TLDHVCKKHN 124 (128)
T ss_pred HHHHHHHhcC
Confidence 9888877664
No 14
>PHA00733 hypothetical protein
Probab=98.78 E-value=3.5e-09 Score=92.84 Aligned_cols=95 Identities=12% Similarity=0.164 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCcccchhhHHHH--hh--hhccCCCCCCCCCCCcccCCchhHHHHHhhhcCCCCcccC
Q psy5888 244 ANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRH--VR--NIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGPTILD 319 (447)
Q Consensus 244 ~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H--~~--~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~ 319 (447)
..|.++-..-...+++.|.+|.+.|.....|..| ++ ..+.+.++|.|..|++.|.....|..|++.| +.+|.|.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~ 103 (128)
T PHA00733 26 EELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCP 103 (128)
T ss_pred HHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCC
Confidence 3444433222235779999999888877666655 11 1233578899999999999999999999876 3568999
Q ss_pred CCCCCCCChhhhhhccCCCCC
Q psy5888 320 DRNGGIPSPSMIHNRCRPPSG 340 (447)
Q Consensus 320 ~C~k~f~s~~~l~~H~~~h~~ 340 (447)
.|++.|.....|..|+...|+
T Consensus 104 ~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 104 VCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CCCCccCCHHHHHHHHHHhcC
Confidence 999999998888888776664
No 15
>KOG3993|consensus
Probab=98.69 E-value=3.3e-09 Score=106.63 Aligned_cols=52 Identities=8% Similarity=-0.030 Sum_probs=35.0
Q ss_pred cccCCCCCCCCChhhhhhccCCCCCCCCCCCchhhhccccccccCChhHHHHHHHhhc
Q psy5888 316 TILDDRNGGIPSPSMIHNRCRPPSGILNDDSYFEEIRSFMGKVSADGNRLVQRVSSLS 373 (447)
Q Consensus 316 ~~C~~C~k~f~s~~~l~~H~~~h~~~~~~~~~~~~~c~~Cgk~f~~~~~L~~H~~~~~ 373 (447)
..|+.|+--+.++..-..+.+... ....|.| ..|--.|.....|.+|+...+
T Consensus 431 ~~pp~~~~ppsss~~sgg~~rlg~----~~q~f~~--ky~~atfyss~~ltrhin~~H 482 (500)
T KOG3993|consen 431 ELPPYDGSPPSSSGSSGGYGRLGI----AEQGFTC--KYCPATFYSSPGLTRHINKCH 482 (500)
T ss_pred cCCCCCCCCcccCCCCCccccccc----hhhcccc--ccchHhhhcCcchHhHhhhcC
Confidence 347778866766555444543322 2345555 699999999999999987544
No 16
>PHA02768 hypothetical protein; Provisional
Probab=98.60 E-value=2.4e-08 Score=73.71 Aligned_cols=42 Identities=26% Similarity=0.647 Sum_probs=27.8
Q ss_pred ccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhH
Q psy5888 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNL 274 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L 274 (447)
|.|+.||+.|.+..+|..|+++|+ ++|+|..|++.|.+.+.|
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY 47 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence 566667777777667777776666 466666666666655544
No 17
>PHA02768 hypothetical protein; Provisional
Probab=98.47 E-value=7e-08 Score=71.25 Aligned_cols=42 Identities=19% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCCCCCCcccCCchhHHHHHhhhcCCCCcccCCCCCCCCChhhh
Q psy5888 288 FKCPLCDRCFGQQTNLDRHLKKHEADGPTILDDRNGGIPSPSMI 331 (447)
Q Consensus 288 ~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~f~s~~~l 331 (447)
|.|+.||+.|.+...|..|+++|+ ++|.|..|++.|...+.|
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY 47 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence 555555555555555555555555 455555555555544433
No 18
>KOG3993|consensus
Probab=98.28 E-value=6.8e-07 Score=90.29 Aligned_cols=115 Identities=20% Similarity=0.322 Sum_probs=74.1
Q ss_pred ccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHHhhhcCCCCccc--CCC-CCCCCChhhhhhcc
Q psy5888 259 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGPTIL--DDR-NGGIPSPSMIHNRC 335 (447)
Q Consensus 259 ~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C--~~C-~k~f~s~~~l~~H~ 335 (447)
|+|..|...|.....|.+|.- --....-|+|+.|+|.|+-..+|..|+|+|.....-.- ..= .+...+....++-.
T Consensus 268 yiCqLCK~kYeD~F~LAQHrC-~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~ 346 (500)
T KOG3993|consen 268 YICQLCKEKYEDAFALAQHRC-PRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE 346 (500)
T ss_pred HHHHHHHHhhhhHHHHhhccC-CeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence 888888888888888888864 23333459999999999999999999999975432110 000 00000111111111
Q ss_pred CCCCCCCCCCCchhhhccccccccCChhHHHHHHHhhcccCcC
Q psy5888 336 RPPSGILNDDSYFEEIRSFMGKVSADGNRLVQRVSSLSRANYN 378 (447)
Q Consensus 336 ~~h~~~~~~~~~~~~~c~~Cgk~f~~~~~L~~H~~~~~~~~~~ 378 (447)
+ .+....+..|.| ..|+|.|.++..|++|+.++++....
T Consensus 347 r--sg~dss~gi~~C--~~C~KkFrRqAYLrKHqlthq~~~~~ 385 (500)
T KOG3993|consen 347 R--SGDDSSSGIFSC--HTCGKKFRRQAYLRKHQLTHQRAPLA 385 (500)
T ss_pred c--cCCcccCceeec--HHhhhhhHHHHHHHHhHHhhhccccc
Confidence 1 333344445544 99999999999999998877765443
No 19
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.27 E-value=4.5e-07 Score=57.10 Aligned_cols=25 Identities=76% Similarity=1.472 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCCcccCCCCCCccc
Q psy5888 245 NLTRHLRTHTGEQPYKCKYCERSFS 269 (447)
Q Consensus 245 ~L~~H~r~H~~ekp~~C~~C~k~F~ 269 (447)
+|.+|+++|+++++|.|++|++.|.
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence 4667777777777777777777765
No 20
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.97 E-value=3.1e-06 Score=53.26 Aligned_cols=24 Identities=54% Similarity=1.261 Sum_probs=14.5
Q ss_pred HHHHhhhhccCCCCCCCCCCCcccC
Q psy5888 274 LQRHVRNIHNKEKPFKCPLCDRCFG 298 (447)
Q Consensus 274 L~~H~~~~H~~~kp~~C~~C~k~F~ 298 (447)
|.+|++ +|+++++|.|++|++.|.
T Consensus 2 l~~H~~-~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMR-THTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHH-HHSSSSSEEESSSSEEES
T ss_pred HHHHhh-hcCCCCCCCCCCCcCeeC
Confidence 556666 566666666666666554
No 21
>PHA00616 hypothetical protein
Probab=97.96 E-value=3.1e-06 Score=59.65 Aligned_cols=34 Identities=24% Similarity=0.574 Sum_probs=28.6
Q ss_pred CccCCCCCCccCChHHHHHHHHHhcCCCcccCCC
Q psy5888 230 RYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKY 263 (447)
Q Consensus 230 ~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~ 263 (447)
+|+|..||+.|...+.|.+|++.|++++++.|++
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 4788888888888888888888888888888875
No 22
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.83 E-value=2.3e-05 Score=58.15 Aligned_cols=49 Identities=35% Similarity=0.729 Sum_probs=22.8
Q ss_pred ccCCCCCCcccchhhHHHHhhhhccCC-CCCCCCCCCcccCCchhHHHHHhhh
Q psy5888 259 YKCKYCERSFSISSNLQRHVRNIHNKE-KPFKCPLCDRCFGQQTNLDRHLKKH 310 (447)
Q Consensus 259 ~~C~~C~k~F~s~~~L~~H~~~~H~~~-kp~~C~~C~k~F~~~~~L~~Hlr~H 310 (447)
|.|++|++. .+...|..|....|..+ +.+.|++|...+. .+|..|+..+
T Consensus 3 f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~ 52 (54)
T PF05605_consen 3 FTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQ 52 (54)
T ss_pred cCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHh
Confidence 445555552 33344555544444432 2355555554333 2555555543
No 23
>PHA00616 hypothetical protein
Probab=97.83 E-value=7.1e-06 Score=57.88 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=21.9
Q ss_pred CCCCCCCCcccCCchhHHHHHhhhcCCCCcccC
Q psy5888 287 PFKCPLCDRCFGQQTNLDRHLKKHEADGPTILD 319 (447)
Q Consensus 287 p~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~ 319 (447)
+|+|..||+.|.....|.+|++.|++++++.|+
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 466666666666666666666666666666654
No 24
>PHA00732 hypothetical protein
Probab=97.79 E-value=1.6e-05 Score=63.79 Aligned_cols=44 Identities=32% Similarity=0.636 Sum_probs=29.5
Q ss_pred CccCCCCCCccCChHHHHHHHHH-hcCCCcccCCCCCCcccchhhHHHHhh
Q psy5888 230 RYACKFCGKVFPRSANLTRHLRT-HTGEQPYKCKYCERSFSISSNLQRHVR 279 (447)
Q Consensus 230 ~~~C~~Cgk~F~~~~~L~~H~r~-H~~ekp~~C~~C~k~F~s~~~L~~H~~ 279 (447)
+|.|..|++.|.+...|..|++. |.+ +.|+.|++.|. .|..|++
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~ 45 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFY 45 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhhc
Confidence 36677777777777777777763 442 46777777776 3666665
No 25
>PHA00732 hypothetical protein
Probab=97.78 E-value=2e-05 Score=63.25 Aligned_cols=48 Identities=27% Similarity=0.631 Sum_probs=40.6
Q ss_pred cccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHHhhhc
Q psy5888 258 PYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHE 311 (447)
Q Consensus 258 p~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~H~ 311 (447)
||.|..|++.|.+...|+.|++..|.+ +.|..|++.|. .|..|++.+.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC---ChhhhhcccC
Confidence 589999999999999999999744653 68999999998 5788986654
No 26
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.56 E-value=0.00012 Score=54.36 Aligned_cols=50 Identities=30% Similarity=0.667 Sum_probs=39.7
Q ss_pred CccCCCCCCccCChHHHHHHHHH-hcCC-CcccCCCCCCcccchhhHHHHhhhhc
Q psy5888 230 RYACKFCGKVFPRSANLTRHLRT-HTGE-QPYKCKYCERSFSISSNLQRHVRNIH 282 (447)
Q Consensus 230 ~~~C~~Cgk~F~~~~~L~~H~r~-H~~e-kp~~C~~C~k~F~s~~~L~~H~~~~H 282 (447)
.|.|++|++ ..+...|..|+.. |..+ +.+.|++|...+. .+|.+|+...|
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 489999999 5567899999885 5443 5799999998765 48999998544
No 27
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.48 E-value=3.3e-05 Score=75.68 Aligned_cols=72 Identities=17% Similarity=0.306 Sum_probs=40.2
Q ss_pred CCCcccCCC--CCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHHhhhcCCCCcccCCCCCCCCChhhhh
Q psy5888 255 GEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGPTILDDRNGGIPSPSMIH 332 (447)
Q Consensus 255 ~ekp~~C~~--C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~f~s~~~l~ 332 (447)
++|||+|++ |.|.+.....|+.|+..-|...+...-+ .-..|.-.-...|||.|++|+|.|++...|+
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p----------~p~~~~~F~~~~KPYrCevC~KRYKNlNGLK 415 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENP----------SPEKMNIFSAKDKPYRCEVCDKRYKNLNGLK 415 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCC----------CccccccccccCCceeccccchhhccCccce
Confidence 358888887 8888888888888876333222111111 0000111122356777777777777666666
Q ss_pred hccC
Q psy5888 333 NRCR 336 (447)
Q Consensus 333 ~H~~ 336 (447)
.|..
T Consensus 416 YHr~ 419 (423)
T COG5189 416 YHRK 419 (423)
T ss_pred eccc
Confidence 6654
No 28
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.28 E-value=0.00014 Score=43.98 Aligned_cols=23 Identities=52% Similarity=1.156 Sum_probs=15.0
Q ss_pred ccCCCCCCccCChHHHHHHHHHh
Q psy5888 231 YACKFCGKVFPRSANLTRHLRTH 253 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r~H 253 (447)
|.|+.|++.|.+...|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 45666666666666666666654
No 29
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.21 E-value=0.00017 Score=70.87 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=45.1
Q ss_pred CCCCCCCCC--CCcccCCchhHHHHHhhhcCCCCcccCCCCCCCCChhhhhhccCCCCCCCCCCCchhhhccccccccCC
Q psy5888 284 KEKPFKCPL--CDRCFGQQTNLDRHLKKHEADGPTILDDRNGGIPSPSMIHNRCRPPSGILNDDSYFEEIRSFMGKVSAD 361 (447)
Q Consensus 284 ~~kp~~C~~--C~k~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~f~s~~~l~~H~~~h~~~~~~~~~~~~~c~~Cgk~f~~ 361 (447)
++|||+|++ |.+.|.....|+.|+.--| |......... -..+......++. +.|.+|+|.|..
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH---------~~~~~~~~p~----p~~~~~F~~~~KP--YrCevC~KRYKN 410 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGH---------QNQKLHENPS----PEKMNIFSAKDKP--YRCEVCDKRYKN 410 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccc---------cCcccCCCCC----ccccccccccCCc--eeccccchhhcc
Confidence 358999987 9999999999999976522 2222110000 0011111223334 366999999999
Q ss_pred hhHHHHHHH
Q psy5888 362 GNRLVQRVS 370 (447)
Q Consensus 362 ~~~L~~H~~ 370 (447)
...|.=|+.
T Consensus 411 lNGLKYHr~ 419 (423)
T COG5189 411 LNGLKYHRK 419 (423)
T ss_pred Cccceeccc
Confidence 999988854
No 30
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.13 E-value=0.00022 Score=58.58 Aligned_cols=73 Identities=22% Similarity=0.587 Sum_probs=20.9
Q ss_pred cCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHHhhh
Q psy5888 232 ACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310 (447)
Q Consensus 232 ~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~H 310 (447)
+|.+|+..|.....|..||...++-. .. ....+.....+..+++ . .....+.|.+|++.|.+...|..|++.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~---~~-~~~~l~~~~~~~~~~~-~-~~~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFD---IP-DQKYLVDPNRLLNYLR-K-KVKESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp ------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred Cccccccccccccccccccccccccc---cc-cccccccccccccccc-c-ccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 48899999999999999997555421 11 1222233444444443 1 1223589999999999999999999874
No 31
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.11 E-value=0.0014 Score=65.28 Aligned_cols=136 Identities=18% Similarity=0.250 Sum_probs=87.6
Q ss_pred ccCCC--CCCccCChHHHHHHHHHhcCCCcccCCCCC---C------cccchhhHHHHhhhhccCCCCC----CCCCCCc
Q psy5888 231 YACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKYCE---R------SFSISSNLQRHVRNIHNKEKPF----KCPLCDR 295 (447)
Q Consensus 231 ~~C~~--Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~---k------~F~s~~~L~~H~~~~H~~~kp~----~C~~C~k 295 (447)
|.|+. |.........|+.|.+..++. +.|.+|- + ...++..|..|.. .-..+..| .|.+|..
T Consensus 152 F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~-~G~~e~GFKGHP~C~FC~~ 228 (493)
T COG5236 152 FKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKN-GGLEEEGFKGHPLCIFCKI 228 (493)
T ss_pred hcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeeccccccccc-CCccccCcCCCchhhhccc
Confidence 77876 666666677899999976653 6787763 2 3345667777865 33333233 5999999
Q ss_pred ccCCchhHHHHHhhhcCCCCcccCCCCCC-------CCChhhhhhccCCCCCCCCCCCchhhhccccccccCChhHHHHH
Q psy5888 296 CFGQQTNLDRHLKKHEADGPTILDDRNGG-------IPSPSMIHNRCRPPSGILNDDSYFEEIRSFMGKVSADGNRLVQR 368 (447)
Q Consensus 296 ~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~-------f~s~~~l~~H~~~h~~~~~~~~~~~~~c~~Cgk~f~~~~~L~~H 368 (447)
.|.....|.+|+|..| |+ |-+|.++ |.+-..|..|.+..|-.- .+..|.-..| .+|...-.|..|
T Consensus 229 ~FYdDDEL~~HcR~~H-E~---ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy~c---t~qtc~~~k~-~vf~~~~el~~h 300 (493)
T COG5236 229 YFYDDDELRRHCRLRH-EA---CHICDMVGPIRYQYFKSYEDLEAHFRNAHYCC---TFQTCRVGKC-YVFPYHTELLEH 300 (493)
T ss_pred eecChHHHHHHHHhhh-hh---hhhhhccCccchhhhhCHHHHHHHhhcCceEE---EEEEEecCcE-EEeccHHHHHHH
Confidence 9999999999998754 23 5555544 666667788876544210 0111111111 478999999999
Q ss_pred HHhhcccCc
Q psy5888 369 VSSLSRANY 377 (447)
Q Consensus 369 ~~~~~~~~~ 377 (447)
+..++....
T Consensus 301 ~~~~h~~~~ 309 (493)
T COG5236 301 LTRFHKVNA 309 (493)
T ss_pred HHHHhhccc
Confidence 976655444
No 32
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.05 E-value=0.00025 Score=42.87 Aligned_cols=22 Identities=41% Similarity=1.247 Sum_probs=11.1
Q ss_pred CCCCCCCcccCCchhHHHHHhh
Q psy5888 288 FKCPLCDRCFGQQTNLDRHLKK 309 (447)
Q Consensus 288 ~~C~~C~k~F~~~~~L~~Hlr~ 309 (447)
|.|+.|++.|.+...|..|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 3455555555555555555544
No 33
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.85 E-value=0.00077 Score=40.53 Aligned_cols=23 Identities=43% Similarity=1.048 Sum_probs=14.1
Q ss_pred ccCCCCCCccCChHHHHHHHHHh
Q psy5888 231 YACKFCGKVFPRSANLTRHLRTH 253 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r~H 253 (447)
|.|.+|++.|.+...|..|++.|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 45666777777777777776655
No 34
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.76 E-value=0.00077 Score=40.55 Aligned_cols=23 Identities=35% Similarity=1.125 Sum_probs=12.3
Q ss_pred CCCCCCCcccCCchhHHHHHhhh
Q psy5888 288 FKCPLCDRCFGQQTNLDRHLKKH 310 (447)
Q Consensus 288 ~~C~~C~k~F~~~~~L~~Hlr~H 310 (447)
|.|++|++.|.+...|..|++.|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 45566666666666666665554
No 35
>KOG2231|consensus
Probab=96.69 E-value=0.0026 Score=69.24 Aligned_cols=101 Identities=22% Similarity=0.338 Sum_probs=66.9
Q ss_pred cCCCCCCccCChHHHHHHHH-HhcCCCcccCCCCC---------CcccchhhHHHHhhhhccCCC----CCCCCCCCccc
Q psy5888 232 ACKFCGKVFPRSANLTRHLR-THTGEQPYKCKYCE---------RSFSISSNLQRHVRNIHNKEK----PFKCPLCDRCF 297 (447)
Q Consensus 232 ~C~~Cgk~F~~~~~L~~H~r-~H~~ekp~~C~~C~---------k~F~s~~~L~~H~~~~H~~~k----p~~C~~C~k~F 297 (447)
.|.+| -.|.....|+.|++ .| +-+.|.+|- ...-+...|..|+..--.+++ --.|.+|...|
T Consensus 117 ~~~~c-~~~~s~~~Lk~H~~~~H---~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~f 192 (669)
T KOG2231|consen 117 ECLHC-TEFKSVENLKNHMRDQH---KLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERF 192 (669)
T ss_pred CCccc-cchhHHHHHHHHHHHhh---hhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhh
Confidence 35555 45558889999996 45 235565542 223345667788763222222 14689999999
Q ss_pred CCchhHHHHHhhhcCCCCcccCCC------CCCCCChhhhhhccCCCCC
Q psy5888 298 GQQTNLDRHLKKHEADGPTILDDR------NGGIPSPSMIHNRCRPPSG 340 (447)
Q Consensus 298 ~~~~~L~~Hlr~H~~ekp~~C~~C------~k~f~s~~~l~~H~~~h~~ 340 (447)
-....|.+|++.+| |.|-+| +.-|.....|..|.+.+|-
T Consensus 193 ld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~Hf 237 (669)
T KOG2231|consen 193 LDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGHF 237 (669)
T ss_pred ccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcCc
Confidence 99999999999877 445555 3446677788999887773
No 36
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=96.62 E-value=0.00075 Score=68.94 Aligned_cols=140 Identities=24% Similarity=0.282 Sum_probs=94.0
Q ss_pred CCccCCCCCCccCChHHHHHHHH--HhcCC--CcccCC--CCCCcccchhhHHHHhhhhccCCCCCCCCC--CCcccCCc
Q psy5888 229 DRYACKFCGKVFPRSANLTRHLR--THTGE--QPYKCK--YCERSFSISSNLQRHVRNIHNKEKPFKCPL--CDRCFGQQ 300 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~~~L~~H~r--~H~~e--kp~~C~--~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~--C~k~F~~~ 300 (447)
.++.|..|...|.+...|.+|.+ .|.++ +++.|+ +|++.|.+...+.+|.. .|.+...+.|.. |...+...
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 366 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHIL-LHTSISPAKEKLLNSSSKFSPL 366 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcc-cccCCCccccccccCccccccc
Confidence 46899999999999999999999 89999 999999 79999999999999998 899888777765 44444433
Q ss_pred hhH-----HHHHhhhcCCCCcccC--CCCCCCCChhhhhhccCCCCCCCCCCCchhhhccccccccCChhHHHHHHHhhc
Q psy5888 301 TNL-----DRHLKKHEADGPTILD--DRNGGIPSPSMIHNRCRPPSGILNDDSYFEEIRSFMGKVSADGNRLVQRVSSLS 373 (447)
Q Consensus 301 ~~L-----~~Hlr~H~~ekp~~C~--~C~k~f~s~~~l~~H~~~h~~~~~~~~~~~~~c~~Cgk~f~~~~~L~~H~~~~~ 373 (447)
..- ..........+.+.|. .|...+.....+..|...+. ......+.+..|.+.|.....+..|++.+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (467)
T COG5048 367 LNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHL----SFRPYNCKNPPCSKSFNRHYNLIPHKKIHT 442 (467)
T ss_pred cCCCCccchhhccCccCCccccccccchhhhhcccccccccccccc----ccCCcCCCCCcchhhccCcccccccccccc
Confidence 331 1111112223333333 35555555555555544433 223334556777787777777777765433
No 37
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.50 E-value=0.0014 Score=47.46 Aligned_cols=41 Identities=29% Similarity=0.624 Sum_probs=24.1
Q ss_pred HHHhhhhccCCCCCCCCCCCcccCCchhHHHHHhhhcCCCC
Q psy5888 275 QRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGP 315 (447)
Q Consensus 275 ~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~H~~ekp 315 (447)
..+.+..+..+.|-.|++|+..+.+..+|++|+.++|+.|+
T Consensus 12 ~~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 12 TKKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp ----CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred hhHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 34444344556788899999989888899999888877664
No 38
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.37 E-value=0.0007 Score=55.55 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=14.0
Q ss_pred hccccccccCChhHHHHHHHhh
Q psy5888 351 IRSFMGKVSADGNRLVQRVSSL 372 (447)
Q Consensus 351 ~c~~Cgk~f~~~~~L~~H~~~~ 372 (447)
.|..|++.|.+...|..||+..
T Consensus 52 ~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 52 RCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp EBSSSS-EESSHHHHHHHHHHT
T ss_pred CCCccCCCCcCHHHHHHHHcCc
Confidence 5567777777777777776644
No 39
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.37 E-value=0.0016 Score=40.87 Aligned_cols=24 Identities=38% Similarity=0.836 Sum_probs=14.9
Q ss_pred ccCCCCCCccCChHHHHHHHHHhc
Q psy5888 231 YACKFCGKVFPRSANLTRHLRTHT 254 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r~H~ 254 (447)
|.|..|++.|.+...|..|++.|.
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCccCCccCChhHHHHHhHHhc
Confidence 566666666666666666665553
No 40
>KOG2231|consensus
Probab=96.29 E-value=0.0056 Score=66.69 Aligned_cols=76 Identities=22% Similarity=0.391 Sum_probs=53.7
Q ss_pred cCCCCCCcccchhhHHHHhhhhccCCCCCCCCCC---------CcccCCchhHHHHHhhhcC-CCC----cccCCCCCCC
Q psy5888 260 KCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLC---------DRCFGQQTNLDRHLKKHEA-DGP----TILDDRNGGI 325 (447)
Q Consensus 260 ~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C---------~k~F~~~~~L~~Hlr~H~~-ekp----~~C~~C~k~f 325 (447)
.|..| -.|.....|+.|+...|.. +.|.+| .....+...|..|++.-.. ++. -.|.+|...|
T Consensus 117 ~~~~c-~~~~s~~~Lk~H~~~~H~~---~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~f 192 (669)
T KOG2231|consen 117 ECLHC-TEFKSVENLKNHMRDQHKL---HLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERF 192 (669)
T ss_pred CCccc-cchhHHHHHHHHHHHhhhh---hccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhh
Confidence 46666 6666899999999766754 556554 2233456678888776322 322 4699999999
Q ss_pred CChhhhhhccCCCC
Q psy5888 326 PSPSMIHNRCRPPS 339 (447)
Q Consensus 326 ~s~~~l~~H~~~h~ 339 (447)
-....|..|++.+|
T Consensus 193 ld~~el~rH~~~~h 206 (669)
T KOG2231|consen 193 LDDDELYRHLRFDH 206 (669)
T ss_pred ccHHHHHHhhccce
Confidence 99999999988665
No 41
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.23 E-value=0.0019 Score=40.53 Aligned_cols=23 Identities=30% Similarity=0.782 Sum_probs=13.0
Q ss_pred CCCCCCCcccCCchhHHHHHhhh
Q psy5888 288 FKCPLCDRCFGQQTNLDRHLKKH 310 (447)
Q Consensus 288 ~~C~~C~k~F~~~~~L~~Hlr~H 310 (447)
|.|..|++.|.....|..|++.|
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCccCCccCChhHHHHHhHHh
Confidence 45555555555555555555554
No 42
>smart00355 ZnF_C2H2 zinc finger.
Probab=95.72 E-value=0.011 Score=35.82 Aligned_cols=23 Identities=52% Similarity=1.050 Sum_probs=14.6
Q ss_pred ccCCCCCCccCChHHHHHHHHHh
Q psy5888 231 YACKFCGKVFPRSANLTRHLRTH 253 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r~H 253 (447)
|.|..|++.|.....|..|++.|
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHh
Confidence 45666666666666666666654
No 43
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=95.63 E-value=0.013 Score=42.53 Aligned_cols=31 Identities=35% Similarity=0.681 Sum_probs=18.9
Q ss_pred CCCccCCCCCCccCChHHHHHHHHHhcCCCc
Q psy5888 228 KDRYACKFCGKVFPRSANLTRHLRTHTGEQP 258 (447)
Q Consensus 228 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp 258 (447)
..+..|++|+..+.+..+|.+|+..+++.||
T Consensus 22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 4567788888888888888888877766654
No 44
>PRK04860 hypothetical protein; Provisional
Probab=95.60 E-value=0.0066 Score=55.28 Aligned_cols=40 Identities=30% Similarity=0.719 Sum_probs=30.3
Q ss_pred CCccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchh
Q psy5888 229 DRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISS 272 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~ 272 (447)
-.|.|. |++ ....+.+|.++|+++++|.|..|++.|....
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence 358887 887 4557788888888888888888888776543
No 45
>smart00355 ZnF_C2H2 zinc finger.
Probab=95.46 E-value=0.011 Score=35.72 Aligned_cols=24 Identities=29% Similarity=0.974 Sum_probs=17.1
Q ss_pred CCCCCCCcccCCchhHHHHHhhhc
Q psy5888 288 FKCPLCDRCFGQQTNLDRHLKKHE 311 (447)
Q Consensus 288 ~~C~~C~k~F~~~~~L~~Hlr~H~ 311 (447)
|.|..|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 467777777777777777777553
No 46
>KOG2482|consensus
Probab=95.13 E-value=0.012 Score=58.80 Aligned_cols=141 Identities=15% Similarity=0.160 Sum_probs=79.1
Q ss_pred CCccCCCCCCccC-ChHHHHHHHH-HhcC--C-------------------CcccCCCCCCcccchhhHHHHhhhh-ccC
Q psy5888 229 DRYACKFCGKVFP-RSANLTRHLR-THTG--E-------------------QPYKCKYCERSFSISSNLQRHVRNI-HNK 284 (447)
Q Consensus 229 k~~~C~~Cgk~F~-~~~~L~~H~r-~H~~--e-------------------kp~~C~~C~k~F~s~~~L~~H~~~~-H~~ 284 (447)
...+|-+|+..+. ..+.+..|+- .|.- . ..+.|-+|.+.|..+..|+.||+.. |..
T Consensus 143 fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hrr 222 (423)
T KOG2482|consen 143 FSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHRR 222 (423)
T ss_pred eeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCcc
Confidence 3467999976654 4456666765 3321 1 1488999999999999999999842 221
Q ss_pred CCCCCCCCCCccc------CCchhHHHH--H--hhh--c-------------CCCC--cccCCCCCCCCChhhhhhccCC
Q psy5888 285 EKPFKCPLCDRCF------GQQTNLDRH--L--KKH--E-------------ADGP--TILDDRNGGIPSPSMIHNRCRP 337 (447)
Q Consensus 285 ~kp~~C~~C~k~F------~~~~~L~~H--l--r~H--~-------------~ekp--~~C~~C~k~f~s~~~l~~H~~~ 337 (447)
-.| +-..-.+-| ..++-...| . .+. . +..+ .+|-.|...+.+...|..|++.
T Consensus 223 inP-knreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~ 301 (423)
T KOG2482|consen 223 INP-KNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKI 301 (423)
T ss_pred cCC-CccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHH
Confidence 111 000000000 000000111 1 100 0 0111 4677777777777777777665
Q ss_pred CCC---------------------CCCCCCchhhhccccccccCChhHHHHHHH
Q psy5888 338 PSG---------------------ILNDDSYFEEIRSFMGKVSADGNRLVQRVS 370 (447)
Q Consensus 338 h~~---------------------~~~~~~~~~~~c~~Cgk~f~~~~~L~~H~~ 370 (447)
.|. ...+.....+.|-.|.-.|.....|..||.
T Consensus 302 vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~ 355 (423)
T KOG2482|consen 302 VHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMV 355 (423)
T ss_pred HHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcc
Confidence 442 112334455678899999999999999985
No 47
>KOG1146|consensus
Probab=95.03 E-value=0.0093 Score=68.63 Aligned_cols=77 Identities=22% Similarity=0.417 Sum_probs=57.2
Q ss_pred CCCCCCccCChHHHHHHHH-HhcCCCcccCCCCCCcccchhhHHHHhhhhcc------------------------CCCC
Q psy5888 233 CKFCGKVFPRSANLTRHLR-THTGEQPYKCKYCERSFSISSNLQRHVRNIHN------------------------KEKP 287 (447)
Q Consensus 233 C~~Cgk~F~~~~~L~~H~r-~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~------------------------~~kp 287 (447)
|.-|+..|.+...+.-|+. .|...+-|+|+.|++.|.....|..|+|.+|. +.++
T Consensus 439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p 518 (1406)
T KOG1146|consen 439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKP 518 (1406)
T ss_pred ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCc
Confidence 4446666666666666655 45556778888888888888888888886443 2357
Q ss_pred CCCCCCCcccCCchhHHHHHhh
Q psy5888 288 FKCPLCDRCFGQQTNLDRHLKK 309 (447)
Q Consensus 288 ~~C~~C~k~F~~~~~L~~Hlr~ 309 (447)
|.|..|...+..+..|.+|+..
T Consensus 519 ~~C~~C~~stttng~LsihlqS 540 (1406)
T KOG1146|consen 519 YPCRACNYSTTTNGNLSIHLQS 540 (1406)
T ss_pred ccceeeeeeeecchHHHHHHHH
Confidence 8999999999999999999864
No 48
>PRK04860 hypothetical protein; Provisional
Probab=94.99 E-value=0.015 Score=53.05 Aligned_cols=37 Identities=16% Similarity=0.369 Sum_probs=30.5
Q ss_pred CCCCCCCCcccCCchhHHHHHhhhcCCCCcccCCCCCCCCC
Q psy5888 287 PFKCPLCDRCFGQQTNLDRHLKKHEADGPTILDDRNGGIPS 327 (447)
Q Consensus 287 p~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~f~s 327 (447)
+|.|. |+. ....+.+|.++|.++++|.|..|+..|..
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~ 155 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF 155 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence 58887 886 66778889999999999999999888753
No 49
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.91 E-value=0.0095 Score=59.44 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=70.8
Q ss_pred cccCCC--CCCcccchhhHHHHhhhhccCCCCCCCCCCC---cccC------CchhHHHHHhhhcCC---CC-cccCCCC
Q psy5888 258 PYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLCD---RCFG------QQTNLDRHLKKHEAD---GP-TILDDRN 322 (447)
Q Consensus 258 p~~C~~--C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~---k~F~------~~~~L~~Hlr~H~~e---kp-~~C~~C~ 322 (447)
.|.|+. |.........|+.|.+..|.. +.|.+|- +.|. +...|..|...-..+ |- -.|.+|.
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~---~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~ 227 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF---VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCK 227 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcCc---EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhcc
Confidence 488887 777777788899999866643 6777762 3343 345666776543222 22 3699999
Q ss_pred CCCCChhhhhhccCCCCCCCCCCCchhhhcccccc-------ccCChhHHHHHHHh
Q psy5888 323 GGIPSPSMIHNRCRPPSGILNDDSYFEEIRSFMGK-------VSADGNRLVQRVSS 371 (447)
Q Consensus 323 k~f~s~~~l~~H~~~h~~~~~~~~~~~~~c~~Cgk-------~f~~~~~L~~H~~~ 371 (447)
..|....+|..|++..|. .|-+|.+ .|.+...|..|.+.
T Consensus 228 ~~FYdDDEL~~HcR~~HE----------~ChICD~v~p~~~QYFK~Y~~Le~HF~~ 273 (493)
T COG5236 228 IYFYDDDELRRHCRLRHE----------ACHICDMVGPIRYQYFKSYEDLEAHFRN 273 (493)
T ss_pred ceecChHHHHHHHHhhhh----------hhhhhhccCccchhhhhCHHHHHHHhhc
Confidence 999999999999987663 3445544 47888999999863
No 50
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=94.42 E-value=0.019 Score=35.14 Aligned_cols=22 Identities=36% Similarity=0.901 Sum_probs=12.9
Q ss_pred ccCCCCCCccCChHHHHHHHHH
Q psy5888 231 YACKFCGKVFPRSANLTRHLRT 252 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r~ 252 (447)
|.|.+|++.|.+...|..|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 4566666666666666666553
No 51
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=94.29 E-value=0.023 Score=34.54 Aligned_cols=23 Identities=48% Similarity=1.047 Sum_probs=13.8
Q ss_pred CCCCCCCcccCCchhHHHHHhhhc
Q psy5888 288 FKCPLCDRCFGQQTNLDRHLKKHE 311 (447)
Q Consensus 288 ~~C~~C~k~F~~~~~L~~Hlr~H~ 311 (447)
|+|..|+.... ...|.+|++.|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 46777776666 666777776654
No 52
>KOG2785|consensus
Probab=94.04 E-value=0.097 Score=53.24 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=89.9
Q ss_pred CccCCCCCCccCChHHHHHHHH--Hhc-----------------------------------CCCcccCCCCCCcccchh
Q psy5888 230 RYACKFCGKVFPRSANLTRHLR--THT-----------------------------------GEQPYKCKYCERSFSISS 272 (447)
Q Consensus 230 ~~~C~~Cgk~F~~~~~L~~H~r--~H~-----------------------------------~ekp~~C~~C~k~F~s~~ 272 (447)
-|.|..|...|.....-+.|++ +|. ++.++.|.+|.+.|.+..
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~ 82 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK 82 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence 3889999999998888888887 441 113588999999998888
Q ss_pred hHHHHhhhhccCC----------------CCCC-------------CCCCCcccCCchhHHHHHhh------h------c
Q psy5888 273 NLQRHVRNIHNKE----------------KPFK-------------CPLCDRCFGQQTNLDRHLKK------H------E 311 (447)
Q Consensus 273 ~L~~H~~~~H~~~----------------kp~~-------------C~~C~k~F~~~~~L~~Hlr~------H------~ 311 (447)
....|+...-..+ ..+. |..|-..+........+... - .
T Consensus 83 a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Edi~~d~~~e~ 162 (390)
T KOG2785|consen 83 AHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEEDIEEDGDDED 162 (390)
T ss_pred hHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhhhhhccchhc
Confidence 8888876311100 0112 22332223222222222111 0 0
Q ss_pred CCCCcccCCCCCCCCChhhhhhccCCCCCCCC-CCCc----------------hhhhccccc---cccCChhHHHHHHHh
Q psy5888 312 ADGPTILDDRNGGIPSPSMIHNRCRPPSGILN-DDSY----------------FEEIRSFMG---KVSADGNRLVQRVSS 371 (447)
Q Consensus 312 ~ekp~~C~~C~k~f~s~~~l~~H~~~h~~~~~-~~~~----------------~~~~c~~Cg---k~f~~~~~L~~H~~~ 371 (447)
..-|-.|-.|++.+.+-..-..|+..+|+..- +..+ ...+|-+|+ +.|.+....+.||..
T Consensus 163 e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 163 ELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred ccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 12246788899888888777888887776432 1111 122667888 889999999999975
Q ss_pred hcccCc
Q psy5888 372 LSRANY 377 (447)
Q Consensus 372 ~~~~~~ 377 (447)
-..+..
T Consensus 243 K~HCkl 248 (390)
T KOG2785|consen 243 KGHCKL 248 (390)
T ss_pred ccCccc
Confidence 444333
No 53
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=93.95 E-value=0.041 Score=33.42 Aligned_cols=23 Identities=39% Similarity=0.829 Sum_probs=13.7
Q ss_pred ccCCCCCCccCChHHHHHHHHHhc
Q psy5888 231 YACKFCGKVFPRSANLTRHLRTHT 254 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r~H~ 254 (447)
|+|.+|+.... ...|.+|++.|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 56777776665 666777776654
No 54
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=93.75 E-value=0.027 Score=34.49 Aligned_cols=22 Identities=32% Similarity=0.964 Sum_probs=12.4
Q ss_pred CCCCCCCcccCCchhHHHHHhh
Q psy5888 288 FKCPLCDRCFGQQTNLDRHLKK 309 (447)
Q Consensus 288 ~~C~~C~k~F~~~~~L~~Hlr~ 309 (447)
|.|.+|++.|.+...|..|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 3455555555555555555543
No 55
>KOG1146|consensus
Probab=93.43 E-value=0.042 Score=63.49 Aligned_cols=102 Identities=16% Similarity=0.152 Sum_probs=77.1
Q ss_pred cCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHHhh-hcCCCCcccCCCCCCCCChhhhhhccCCC
Q psy5888 260 KCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKK-HEADGPTILDDRNGGIPSPSMIHNRCRPP 338 (447)
Q Consensus 260 ~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~-H~~ekp~~C~~C~k~f~s~~~l~~H~~~h 338 (447)
.|.-|+..|.++..+.-|+..+|...+-|+|+.|+..|.....|..|+|. |..... .+| .....|.+..
T Consensus 438 e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~---~~c-------~~gq~~~~~a 507 (1406)
T KOG1146|consen 438 ELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS---AYC-------KAGQNHPRLA 507 (1406)
T ss_pred cccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccch---hHh-------Hhcccccccc
Confidence 36667888888888888888888888999999999999999999999988 443332 112 2234555555
Q ss_pred CCCCCCCCchhhhccccccccCChhHHHHHHHh
Q psy5888 339 SGILNDDSYFEEIRSFMGKVSADGNRLVQRVSS 371 (447)
Q Consensus 339 ~~~~~~~~~~~~~c~~Cgk~f~~~~~L~~H~~~ 371 (447)
.+...+..+....|..|...+.....|.+|+..
T Consensus 508 rg~~~~~~~~p~~C~~C~~stttng~LsihlqS 540 (1406)
T KOG1146|consen 508 RGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQS 540 (1406)
T ss_pred ccccccCCCCcccceeeeeeeecchHHHHHHHH
Confidence 544444455556779999999999999999963
No 56
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=92.94 E-value=0.029 Score=35.27 Aligned_cols=21 Identities=29% Similarity=0.812 Sum_probs=11.8
Q ss_pred ccCCCCCCccCChHHHHHHHH
Q psy5888 231 YACKFCGKVFPRSANLTRHLR 251 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r 251 (447)
|.|..|++.|.+...|..|++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 455555555555555555554
No 57
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=92.64 E-value=0.072 Score=54.29 Aligned_cols=138 Identities=20% Similarity=0.261 Sum_probs=91.6
Q ss_pred hccCCCCCCCchhhhhccc--ccCCCCCCCccCC--CCCCccCChHHHHHHHHHhcCCCcccCCC--CCCcccchhhHHH
Q psy5888 203 RSQLPPLANSPKQFQESIS--NNTGKPKDRYACK--FCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQR 276 (447)
Q Consensus 203 ~~~~p~~~~s~~~~~~~~~--~~~~~~~k~~~C~--~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~--C~k~F~s~~~L~~ 276 (447)
+..+...+.....+..+.. .+....-+++.|. .|++.|.+...+.+|...|.+..++.|.. |...+.....-..
T Consensus 292 ~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (467)
T COG5048 292 SKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEP 371 (467)
T ss_pred CccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccCCCC
Confidence 3344444444444444444 2222212789999 79999999999999999999998888876 5555554433111
Q ss_pred Hhh----hhccCCCCCCCCC--CCcccCCchhHHHHHhhhcCCC--CcccCCCCCCCCChhhhhhccCCCCC
Q psy5888 277 HVR----NIHNKEKPFKCPL--CDRCFGQQTNLDRHLKKHEADG--PTILDDRNGGIPSPSMIHNRCRPPSG 340 (447)
Q Consensus 277 H~~----~~H~~~kp~~C~~--C~k~F~~~~~L~~Hlr~H~~ek--p~~C~~C~k~f~s~~~l~~H~~~h~~ 340 (447)
+.. ..-...+.+.|.. |...+.....+..|...|.... .+.|..|.+.|.....+..|.+.+..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (467)
T COG5048 372 PQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTN 443 (467)
T ss_pred ccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCccccccccccccc
Confidence 111 0111223355543 7788888888888988887766 46677899999988888888877653
No 58
>KOG2482|consensus
Probab=92.31 E-value=0.099 Score=52.36 Aligned_cols=111 Identities=19% Similarity=0.352 Sum_probs=67.5
Q ss_pred CCccCCCCCCccCChHHHHHHHHH--hcCCCc--------ccCCC--CCCccc-chhhHHHHhhhhcc------------
Q psy5888 229 DRYACKFCGKVFPRSANLTRHLRT--HTGEQP--------YKCKY--CERSFS-ISSNLQRHVRNIHN------------ 283 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~~~L~~H~r~--H~~ekp--------~~C~~--C~k~F~-s~~~L~~H~~~~H~------------ 283 (447)
.++.|-+|.+.|..+..|+.|||. |....| |.=.+ -+++.. ....+.+-...-+.
T Consensus 194 ~r~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed 273 (423)
T KOG2482|consen 194 ERLRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNED 273 (423)
T ss_pred hhheeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcC
Confidence 358999999999999999999984 332222 11111 122111 11111000000000
Q ss_pred CCCC--CCCCCCCcccCCchhHHHHHhhhcC---------------------------CCCcccCCCCCCCCChhhhhhc
Q psy5888 284 KEKP--FKCPLCDRCFGQQTNLDRHLKKHEA---------------------------DGPTILDDRNGGIPSPSMIHNR 334 (447)
Q Consensus 284 ~~kp--~~C~~C~k~F~~~~~L~~Hlr~H~~---------------------------ekp~~C~~C~k~f~s~~~l~~H 334 (447)
+..+ ..|-+|...+.....|..||+.-|. .+...|..|.-.|.....|..|
T Consensus 274 ~a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~h 353 (423)
T KOG2482|consen 274 DAEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIH 353 (423)
T ss_pred CCCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhh
Confidence 1112 5788898888888889999887442 1124588999999999999999
Q ss_pred cCCCC
Q psy5888 335 CRPPS 339 (447)
Q Consensus 335 ~~~h~ 339 (447)
+..+.
T Consensus 354 m~e~k 358 (423)
T KOG2482|consen 354 MVEDK 358 (423)
T ss_pred ccccc
Confidence 86553
No 59
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=91.82 E-value=0.084 Score=33.11 Aligned_cols=21 Identities=29% Similarity=0.861 Sum_probs=15.7
Q ss_pred ccCCCCCCcccchhhHHHHhh
Q psy5888 259 YKCKYCERSFSISSNLQRHVR 279 (447)
Q Consensus 259 ~~C~~C~k~F~s~~~L~~H~~ 279 (447)
|.|..|++.|.+...|..|++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 567777777777777777765
No 60
>KOG4173|consensus
Probab=91.36 E-value=0.065 Score=50.06 Aligned_cols=87 Identities=23% Similarity=0.594 Sum_probs=64.0
Q ss_pred CCccCCC--CCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhcc---------CCCCCCCCC--CCc
Q psy5888 229 DRYACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN---------KEKPFKCPL--CDR 295 (447)
Q Consensus 229 k~~~C~~--Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~---------~~kp~~C~~--C~k 295 (447)
..|.|++ |-+.|....++..|..+-++. .|.+|.+.|.+..-|..|+...|. |...|.|-+ |+.
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~ 154 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTE 154 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhh
Confidence 4588988 888898888888887654443 599999999999988888875553 344578854 888
Q ss_pred ccCCchhHHHHH-hhhcCCCCccc
Q psy5888 296 CFGQQTNLDRHL-KKHEADGPTIL 318 (447)
Q Consensus 296 ~F~~~~~L~~Hl-r~H~~ekp~~C 318 (447)
.|.+...-++|+ +.|.--..|..
T Consensus 155 KFkT~r~RkdH~I~~Hk~Pa~frF 178 (253)
T KOG4173|consen 155 KFKTSRDRKDHMIRMHKYPADFRF 178 (253)
T ss_pred hhhhhhhhhhHHHHhccCCcceee
Confidence 888888888886 44654444443
No 61
>KOG2893|consensus
Probab=90.45 E-value=0.1 Score=49.75 Aligned_cols=49 Identities=22% Similarity=0.577 Sum_probs=37.9
Q ss_pred ccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhcc
Q psy5888 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 283 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~ 283 (447)
--|-+|++.|....-|..|++. |-|+|.+|.|.+.+--.|..|-..+|.
T Consensus 11 pwcwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvhk 59 (341)
T KOG2893|consen 11 PWCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVHK 59 (341)
T ss_pred ceeeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhhh
Confidence 3477899999999999988875 348999999888777777777544554
No 62
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.44 E-value=0.7 Score=39.46 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=58.7
Q ss_pred ccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhcc------CCCC-------CCCCCCCccc
Q psy5888 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN------KEKP-------FKCPLCDRCF 297 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~------~~kp-------~~C~~C~k~F 297 (447)
|.|+.|+-.. -+-|..|++|+-......+|.|... |. .+.+ ..|-.|...|
T Consensus 2 Y~CPrC~skv--------------C~LP~~CpiCgLtLVss~HLARSyH--HLfPl~~f~ev~~~~~~~~~~C~~C~~~f 65 (112)
T TIGR00622 2 YFCPQCRAKV--------------CELPVECPICGLTLILSTHLARSYH--HLFPLKAFQEIPLEEYNGSRFCFGCQGPF 65 (112)
T ss_pred ccCCCCCCCc--------------cCCCCcCCcCCCEEeccchHHHhhh--ccCCCcccccccccccCCCCcccCcCCCC
Confidence 6777777433 2457889999988888888887643 32 1111 2388888888
Q ss_pred CCchhHHHHHhhhcCCCCcccCCCCCCCCChhhhhhccCCCC
Q psy5888 298 GQQTNLDRHLKKHEADGPTILDDRNGGIPSPSMIHNRCRPPS 339 (447)
Q Consensus 298 ~~~~~L~~Hlr~H~~ekp~~C~~C~k~f~s~~~l~~H~~~h~ 339 (447)
....... ...-.....|.|+.|...|-..-+...|...|.
T Consensus 66 ~~~~~~~--~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~ 105 (112)
T TIGR00622 66 PKPPVSP--FDELKDSHRYVCAVCKNVFCVDCDVFVHESLHC 105 (112)
T ss_pred CCccccc--ccccccccceeCCCCCCccccccchhhhhhccC
Confidence 7643111 000123446889999999887777777776665
No 63
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=89.14 E-value=0.35 Score=29.97 Aligned_cols=20 Identities=30% Similarity=0.840 Sum_probs=11.7
Q ss_pred ccCCCCCCccCChHHHHHHHH
Q psy5888 231 YACKFCGKVFPRSANLTRHLR 251 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r 251 (447)
..|++||+.| ....|.+|+.
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHH
Confidence 3566666666 4555666654
No 64
>KOG4167|consensus
Probab=89.03 E-value=0.52 Score=51.67 Aligned_cols=28 Identities=36% Similarity=0.808 Sum_probs=24.9
Q ss_pred CCCCccCCCCCCccCChHHHHHHHHHhc
Q psy5888 227 PKDRYACKFCGKVFPRSANLTRHLRTHT 254 (447)
Q Consensus 227 ~~k~~~C~~Cgk~F~~~~~L~~H~r~H~ 254 (447)
+...|.|..|+|+|.....+.+||++|.
T Consensus 789 ~~giFpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 789 PTGIFPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred CCceeehHHHHHHHHHHhhhhHHHHHHH
Confidence 4567999999999999999999999995
No 65
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=88.35 E-value=0.37 Score=29.84 Aligned_cols=19 Identities=42% Similarity=1.024 Sum_probs=9.3
Q ss_pred CCCCCCcccCCchhHHHHHh
Q psy5888 289 KCPLCDRCFGQQTNLDRHLK 308 (447)
Q Consensus 289 ~C~~C~k~F~~~~~L~~Hlr 308 (447)
.|+.||+.| ....|.+|++
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 455555555 3344455543
No 66
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=87.93 E-value=0.4 Score=31.59 Aligned_cols=23 Identities=26% Similarity=0.704 Sum_probs=17.0
Q ss_pred CccCCCCCCccCChHHHHHHHHH
Q psy5888 230 RYACKFCGKVFPRSANLTRHLRT 252 (447)
Q Consensus 230 ~~~C~~Cgk~F~~~~~L~~H~r~ 252 (447)
.|.|.+|++.|.....+..|++.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 46788888888877777777753
No 67
>KOG4173|consensus
Probab=87.92 E-value=0.12 Score=48.24 Aligned_cols=77 Identities=17% Similarity=0.376 Sum_probs=56.4
Q ss_pred CcccCCC--CCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHHhh-hc---------CCCCcccC--CCC
Q psy5888 257 QPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKK-HE---------ADGPTILD--DRN 322 (447)
Q Consensus 257 kp~~C~~--C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~-H~---------~ekp~~C~--~C~ 322 (447)
..|.|++ |-+.|....++..|....|+ -.|.+|.+.|.+...|..|+.. |. |...|.|- .|+
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~----~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt 153 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHG----NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCT 153 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhccc----chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhh
Confidence 4588988 88999999888888765564 4799999999999999999754 43 33446663 566
Q ss_pred CCCCChhhhhhccCC
Q psy5888 323 GGIPSPSMIHNRCRP 337 (447)
Q Consensus 323 k~f~s~~~l~~H~~~ 337 (447)
-.|.+....+.|+-.
T Consensus 154 ~KFkT~r~RkdH~I~ 168 (253)
T KOG4173|consen 154 EKFKTSRDRKDHMIR 168 (253)
T ss_pred hhhhhhhhhhhHHHH
Confidence 666666666666543
No 68
>KOG2893|consensus
Probab=86.14 E-value=0.24 Score=47.31 Aligned_cols=41 Identities=34% Similarity=0.705 Sum_probs=18.1
Q ss_pred CCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHH
Q psy5888 261 CKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRH 306 (447)
Q Consensus 261 C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~H 306 (447)
|=+|++.|....-|.+|++. |-|+|.+|-+...+--.|..|
T Consensus 13 cwycnrefddekiliqhqka-----khfkchichkkl~sgpglsih 53 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKA-----KHFKCHICHKKLFSGPGLSIH 53 (341)
T ss_pred eeecccccchhhhhhhhhhh-----ccceeeeehhhhccCCCceee
Confidence 44455555554444444432 224555554443333334444
No 69
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=84.96 E-value=1 Score=38.04 Aligned_cols=25 Identities=20% Similarity=0.674 Sum_probs=21.2
Q ss_pred CCC----CCCCcccCCchhHHHHHhhhcC
Q psy5888 288 FKC----PLCDRCFGQQTNLDRHLKKHEA 312 (447)
Q Consensus 288 ~~C----~~C~k~F~~~~~L~~Hlr~H~~ 312 (447)
|.| ..|++.+.+...+.+|++.+|+
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 888 8899988899999999887664
No 70
>KOG4377|consensus
Probab=83.78 E-value=1.4 Score=45.49 Aligned_cols=28 Identities=11% Similarity=-0.046 Sum_probs=23.6
Q ss_pred hhhhccccccccCChhHHHHHHHhhccc
Q psy5888 348 FEEIRSFMGKVSADGNRLVQRVSSLSRA 375 (447)
Q Consensus 348 ~~~~c~~Cgk~f~~~~~L~~H~~~~~~~ 375 (447)
|.|....|+..+..-+.+..|.+.+.+.
T Consensus 402 fhc~r~Gc~~tl~s~sqm~shkrkheRq 429 (480)
T KOG4377|consen 402 FHCDRLGCEATLYSVSQMASHKRKHERQ 429 (480)
T ss_pred eeecccCCceEEEehhhhhhhhhhhhhh
Confidence 5567789999999999999998877765
No 71
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=83.33 E-value=0.89 Score=38.70 Aligned_cols=15 Identities=27% Similarity=0.680 Sum_probs=7.7
Q ss_pred CcccCCCCCCcccch
Q psy5888 257 QPYKCKYCERSFSIS 271 (447)
Q Consensus 257 kp~~C~~C~k~F~s~ 271 (447)
.|..|++||..|.-.
T Consensus 25 ~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 25 DPIVCPKCGTEFPPE 39 (108)
T ss_pred CCccCCCCCCccCcc
Confidence 445555555555443
No 72
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=82.54 E-value=0.87 Score=29.89 Aligned_cols=22 Identities=23% Similarity=0.688 Sum_probs=13.3
Q ss_pred cccCCCCCCcccchhhHHHHhh
Q psy5888 258 PYKCKYCERSFSISSNLQRHVR 279 (447)
Q Consensus 258 p~~C~~C~k~F~s~~~L~~H~~ 279 (447)
+|.|.+|++.|.+...+..|+.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 3556666666666666666654
No 73
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=82.17 E-value=1.1 Score=38.20 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=21.7
Q ss_pred CCCCCCCcccCCchhHHHHHhhhcCCCCcccCCCCCCCCCh
Q psy5888 288 FKCPLCDRCFGQQTNLDRHLKKHEADGPTILDDRNGGIPSP 328 (447)
Q Consensus 288 ~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~f~s~ 328 (447)
..|+.||+.|... +..|..|++||..|.-.
T Consensus 10 R~Cp~CG~kFYDL-----------nk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDL-----------NKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccC-----------CCCCccCCCCCCccCcc
Confidence 6788888888654 23677788888888654
No 74
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=80.91 E-value=1 Score=29.79 Aligned_cols=11 Identities=36% Similarity=1.283 Sum_probs=6.5
Q ss_pred ccCCCCCCccC
Q psy5888 231 YACKFCGKVFP 241 (447)
Q Consensus 231 ~~C~~Cgk~F~ 241 (447)
|.|..||..+.
T Consensus 2 ~~C~~CGy~y~ 12 (33)
T cd00350 2 YVCPVCGYIYD 12 (33)
T ss_pred EECCCCCCEEC
Confidence 56666665543
No 75
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=79.99 E-value=0.6 Score=44.60 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=9.4
Q ss_pred CCCCCCCcccCCc
Q psy5888 288 FKCPLCDRCFGQQ 300 (447)
Q Consensus 288 ~~C~~C~k~F~~~ 300 (447)
+.|+.||.+|...
T Consensus 49 ~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 49 WVCPHCGYAAFEE 61 (214)
T ss_pred EECCCCCCccccc
Confidence 5688888877643
No 76
>KOG1842|consensus
Probab=77.85 E-value=2.2 Score=44.55 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=24.1
Q ss_pred CCCCCccCCCCCCccCChHHHHHHHHHhc
Q psy5888 226 KPKDRYACKFCGKVFPRSANLTRHLRTHT 254 (447)
Q Consensus 226 ~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~ 254 (447)
....-|.|++|.+-|.....|..|...-+
T Consensus 11 ~i~egflCPiC~~dl~~~~~L~~H~d~eH 39 (505)
T KOG1842|consen 11 EILEGFLCPICLLDLPNLSALNDHLDVEH 39 (505)
T ss_pred hhhhcccCchHhhhhhhHHHHHHHHhhhc
Confidence 33455999999999999999999998543
No 77
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=75.60 E-value=1.1 Score=33.24 Aligned_cols=27 Identities=30% Similarity=0.674 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCcccCCchhHHHHHhhh
Q psy5888 284 KEKPFKCPLCDRCFGQQTNLDRHLKKH 310 (447)
Q Consensus 284 ~~kp~~C~~C~k~F~~~~~L~~Hlr~H 310 (447)
|+.-++|+-|+..|.....+.+|...-
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVNKa 40 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVNKA 40 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhhHH
Confidence 555567777777777777777776553
No 78
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=75.42 E-value=4 Score=34.41 Aligned_cols=53 Identities=23% Similarity=0.466 Sum_probs=40.3
Q ss_pred CCccCCCCCCccCChHHHHHHHHH-hcCC-----------------------------------------CcccC----C
Q psy5888 229 DRYACKFCGKVFPRSANLTRHLRT-HTGE-----------------------------------------QPYKC----K 262 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~~~L~~H~r~-H~~e-----------------------------------------kp~~C----~ 262 (447)
+...|..|+....- ..+..|++. |+.. .-|.| .
T Consensus 10 ~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~~ 88 (109)
T PF12013_consen 10 RVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDPP 88 (109)
T ss_pred CEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCCC
Confidence 44679899877655 788888883 3211 12899 8
Q ss_pred CCCCcccchhhHHHHhhhhc
Q psy5888 263 YCERSFSISSNLQRHVRNIH 282 (447)
Q Consensus 263 ~C~k~F~s~~~L~~H~~~~H 282 (447)
.|+..+.+...+.+|++..|
T Consensus 89 ~C~y~~~~~~~m~~H~~~~H 108 (109)
T PF12013_consen 89 HCGYITRSKKTMRKHWRKEH 108 (109)
T ss_pred CCCcEeccHHHHHHHHHHhc
Confidence 99999999999999998655
No 79
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=74.49 E-value=2.4 Score=36.96 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=6.5
Q ss_pred CCCCCCCCcccCC
Q psy5888 287 PFKCPLCDRCFGQ 299 (447)
Q Consensus 287 p~~C~~C~k~F~~ 299 (447)
|..|+.||..|.-
T Consensus 26 p~vcP~cg~~~~~ 38 (129)
T TIGR02300 26 PAVSPYTGEQFPP 38 (129)
T ss_pred CccCCCcCCccCc
Confidence 4555555555433
No 80
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=74.07 E-value=0.84 Score=43.58 Aligned_cols=13 Identities=0% Similarity=-0.314 Sum_probs=9.9
Q ss_pred cccCCCCCCCCCh
Q psy5888 316 TILDDRNGGIPSP 328 (447)
Q Consensus 316 ~~C~~C~k~f~s~ 328 (447)
.+|+.||+.|...
T Consensus 49 ~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 49 WVCPHCGYAAFEE 61 (214)
T ss_pred EECCCCCCccccc
Confidence 5799999987533
No 81
>KOG2186|consensus
Probab=70.71 E-value=2.3 Score=41.29 Aligned_cols=47 Identities=17% Similarity=0.616 Sum_probs=35.7
Q ss_pred CccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhh
Q psy5888 230 RYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVR 279 (447)
Q Consensus 230 ~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~ 279 (447)
.|.|..||....-. .+.+|+-.-++ .-|.|-.|++.|.. ..+..|..
T Consensus 3 ~FtCnvCgEsvKKp-~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 3 FFTCNVCGESVKKP-QVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred EEehhhhhhhcccc-chHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence 48899999776544 57778876655 67899999999988 55677765
No 82
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=70.61 E-value=2.2 Score=37.63 Aligned_cols=26 Identities=54% Similarity=0.883 Sum_probs=17.3
Q ss_pred CCccCCCCCCccCChHHHHHHHHHhcCCC
Q psy5888 229 DRYACKFCGKVFPRSANLTRHLRTHTGEQ 257 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~~~L~~H~r~H~~ek 257 (447)
+...|-+||+.|+ .|++|++.|+|-.
T Consensus 71 d~i~clecGk~~k---~LkrHL~~~~glt 96 (132)
T PF05443_consen 71 DYIICLECGKKFK---TLKRHLRTHHGLT 96 (132)
T ss_dssp S-EE-TBT--EES---BHHHHHHHTT-S-
T ss_pred CeeEEccCCcccc---hHHHHHHHccCCC
Confidence 5578999999998 5799999998753
No 83
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=70.56 E-value=3.7 Score=35.79 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=24.7
Q ss_pred CCCCCCCcccCCchhHHHHHhhhcCCCCcccCCCCCCCCChhh
Q psy5888 288 FKCPLCDRCFGQQTNLDRHLKKHEADGPTILDDRNGGIPSPSM 330 (447)
Q Consensus 288 ~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~f~s~~~ 330 (447)
..|+.||+.|... +..|..|++||..|.-...
T Consensus 10 r~Cp~cg~kFYDL-----------nk~p~vcP~cg~~~~~~~~ 41 (129)
T TIGR02300 10 RICPNTGSKFYDL-----------NRRPAVSPYTGEQFPPEEA 41 (129)
T ss_pred ccCCCcCcccccc-----------CCCCccCCCcCCccCcchh
Confidence 7899999998654 2468899999999865533
No 84
>PRK04023 DNA polymerase II large subunit; Validated
Probab=69.08 E-value=5.3 Score=45.90 Aligned_cols=23 Identities=30% Similarity=0.716 Sum_probs=15.2
Q ss_pred CCccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCc
Q psy5888 229 DRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERS 267 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~ 267 (447)
....|+.||... -.+.|+.||..
T Consensus 625 g~RfCpsCG~~t----------------~~frCP~CG~~ 647 (1121)
T PRK04023 625 GRRKCPSCGKET----------------FYRRCPFCGTH 647 (1121)
T ss_pred cCccCCCCCCcC----------------CcccCCCCCCC
Confidence 346788888762 23678888765
No 85
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.74 E-value=9.8 Score=32.57 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=54.5
Q ss_pred CccCCCCCCccCChHHHHHHHHHhcC--CCc------------ccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCc
Q psy5888 230 RYACKFCGKVFPRSANLTRHLRTHTG--EQP------------YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDR 295 (447)
Q Consensus 230 ~~~C~~Cgk~F~~~~~L~~H~r~H~~--ekp------------~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k 295 (447)
+..|++||-......+|.+. .|+- -++ -.|--|...|........- .-.....|.|+.|..
T Consensus 15 P~~CpiCgLtLVss~HLARS--yHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~---~~~~~~~y~C~~C~~ 89 (112)
T TIGR00622 15 PVECPICGLTLILSTHLARS--YHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFD---ELKDSHRYVCAVCKN 89 (112)
T ss_pred CCcCCcCCCEEeccchHHHh--hhccCCCcccccccccccCCCCcccCcCCCCCCccccccc---ccccccceeCCCCCC
Confidence 46799999888877777764 2321 111 2388899998765321100 011234599999999
Q ss_pred ccCCchhHHHHHhhhcCCCCcccCCCC
Q psy5888 296 CFGQQTNLDRHLKKHEADGPTILDDRN 322 (447)
Q Consensus 296 ~F~~~~~L~~Hlr~H~~ekp~~C~~C~ 322 (447)
.|-..-+.-.|...|. |..|.
T Consensus 90 ~FC~dCD~fiHe~Lh~------CPGC~ 110 (112)
T TIGR00622 90 VFCVDCDVFVHESLHC------CPGCI 110 (112)
T ss_pred ccccccchhhhhhccC------CcCCC
Confidence 9999999888987765 66665
No 86
>KOG2186|consensus
Probab=68.05 E-value=3 Score=40.51 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=33.0
Q ss_pred cccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHHhhh
Q psy5888 258 PYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310 (447)
Q Consensus 258 p~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~H 310 (447)
-|.|..||....- -.+.+|+. ...+ .-|.|--|+..|.+ ..+..|..--
T Consensus 3 ~FtCnvCgEsvKK-p~vekH~s-rCrn-~~fSCIDC~k~F~~-~sYknH~kCI 51 (276)
T KOG2186|consen 3 FFTCNVCGESVKK-PQVEKHMS-RCRN-AYFSCIDCGKTFER-VSYKNHTKCI 51 (276)
T ss_pred EEehhhhhhhccc-cchHHHHH-hccC-CeeEEeeccccccc-chhhhhhhhc
Confidence 3778888876554 34677876 4545 44888888888877 5667776543
No 87
>KOG2785|consensus
Probab=66.59 E-value=6.3 Score=40.46 Aligned_cols=76 Identities=17% Similarity=0.303 Sum_probs=48.7
Q ss_pred CCCccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCC---cccCCchhHH
Q psy5888 228 KDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCD---RCFGQQTNLD 304 (447)
Q Consensus 228 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~---k~F~~~~~L~ 304 (447)
..+-.|-+|++.|.+...-..||..++|- |.=.. ........|..-+. -....-|.|-+|+ +.|.+....+
T Consensus 164 ~~Pt~CLfC~~~~k~~e~~~~HM~~~Hgf--fIPdr--eYL~D~~GLl~YLg--eKV~~~~~CL~CN~~~~~f~sleavr 237 (390)
T KOG2785|consen 164 LIPTDCLFCDKKSKSLEENLKHMFKEHGF--FIPDR--EYLTDEKGLLKYLG--EKVGIGFICLFCNELGRPFSSLEAVR 237 (390)
T ss_pred cCCcceeecCCCcccHHHHHHHHhhccCC--cCCch--HhhhchhHHHHHHH--HHhccCceEEEeccccCcccccHHHH
Confidence 34567999999999999999999988762 11110 11122333333332 1122347888887 8888888888
Q ss_pred HHHhh
Q psy5888 305 RHLKK 309 (447)
Q Consensus 305 ~Hlr~ 309 (447)
.||..
T Consensus 238 ~HM~~ 242 (390)
T KOG2785|consen 238 AHMRD 242 (390)
T ss_pred HHHhh
Confidence 88754
No 88
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=66.47 E-value=1.9 Score=39.02 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=5.4
Q ss_pred CCCCCCCcccCC
Q psy5888 288 FKCPLCDRCFGQ 299 (447)
Q Consensus 288 ~~C~~C~k~F~~ 299 (447)
+.|+.||++|..
T Consensus 29 ~~c~~c~~~f~~ 40 (154)
T PRK00464 29 RECLACGKRFTT 40 (154)
T ss_pred eeccccCCcceE
Confidence 444444444433
No 89
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=66.02 E-value=2.6 Score=31.35 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=11.3
Q ss_pred CCcccCCCCCCcccchhhHHHHhh
Q psy5888 256 EQPYKCKYCERSFSISSNLQRHVR 279 (447)
Q Consensus 256 ekp~~C~~C~k~F~s~~~L~~H~~ 279 (447)
|.-+.|+-|+..|.....+.+|..
T Consensus 15 E~~lrCPRC~~~FR~~K~Y~RHVN 38 (65)
T COG4049 15 EEFLRCPRCGMVFRRRKDYIRHVN 38 (65)
T ss_pred ceeeeCCchhHHHHHhHHHHHHhh
Confidence 334445445544444444444444
No 90
>KOG2071|consensus
Probab=65.94 E-value=5.2 Score=43.34 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=18.9
Q ss_pred CCccCCCCCCccCChHHHHHHHHHhc
Q psy5888 229 DRYACKFCGKVFPRSANLTRHLRTHT 254 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~~~L~~H~r~H~ 254 (447)
.+..|..||..|.+......||..|-
T Consensus 417 ~pnqC~~CG~R~~~~ee~sk~md~H~ 442 (579)
T KOG2071|consen 417 SPNQCKSCGLRFDDSEERSKHMDIHD 442 (579)
T ss_pred CcchhcccccccccchhhhhHhhhhh
Confidence 45678888888888777777776663
No 91
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=65.68 E-value=3.9 Score=27.74 Aligned_cols=12 Identities=25% Similarity=0.908 Sum_probs=5.7
Q ss_pred cCCCCCCcccch
Q psy5888 260 KCKYCERSFSIS 271 (447)
Q Consensus 260 ~C~~C~k~F~s~ 271 (447)
.|+.|+..|.-.
T Consensus 4 ~CP~C~~~f~v~ 15 (37)
T PF13719_consen 4 TCPNCQTRFRVP 15 (37)
T ss_pred ECCCCCceEEcC
Confidence 355555544443
No 92
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=64.89 E-value=3.7 Score=27.66 Aligned_cols=10 Identities=40% Similarity=1.082 Sum_probs=4.1
Q ss_pred cCCCCCCccc
Q psy5888 260 KCKYCERSFS 269 (447)
Q Consensus 260 ~C~~C~k~F~ 269 (447)
.|+.|+..|.
T Consensus 4 ~CP~C~~~~~ 13 (38)
T TIGR02098 4 QCPNCKTSFR 13 (38)
T ss_pred ECCCCCCEEE
Confidence 3444444433
No 93
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=64.57 E-value=4.5 Score=41.02 Aligned_cols=27 Identities=33% Similarity=0.624 Sum_probs=22.3
Q ss_pred CCccCCCCCCccCChHHHHHHHH--HhcC
Q psy5888 229 DRYACKFCGKVFPRSANLTRHLR--THTG 255 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~~~L~~H~r--~H~~ 255 (447)
..+.|..|++.|.+..-+..|+. .|..
T Consensus 237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k 265 (470)
T COG5188 237 PKVYCVKCGREFSRSKVFEYHLEGKRHCK 265 (470)
T ss_pred cceeeHhhhhHhhhhHHHHHHHhhhhhhh
Confidence 45889999999999999999986 4543
No 94
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=63.38 E-value=7 Score=35.47 Aligned_cols=32 Identities=19% Similarity=0.526 Sum_probs=18.7
Q ss_pred CCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCccc
Q psy5888 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCF 297 (447)
Q Consensus 256 ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F 297 (447)
..-|.|+.|+.+|.....+. .-|.|+.||...
T Consensus 107 ~~~Y~Cp~c~~r~tf~eA~~----------~~F~Cp~Cg~~L 138 (158)
T TIGR00373 107 NMFFICPNMCVRFTFNEAME----------LNFTCPRCGAML 138 (158)
T ss_pred CCeEECCCCCcEeeHHHHHH----------cCCcCCCCCCEe
Confidence 34466776776666655543 136677776543
No 95
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=62.61 E-value=4.5 Score=26.97 Aligned_cols=25 Identities=32% Similarity=0.836 Sum_probs=14.0
Q ss_pred CccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCC
Q psy5888 230 RYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCER 266 (447)
Q Consensus 230 ~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k 266 (447)
.|.|..||..+... +.|..|++|+.
T Consensus 2 ~~~C~~CG~i~~g~------------~~p~~CP~Cg~ 26 (34)
T cd00729 2 VWVCPVCGYIHEGE------------EAPEKCPICGA 26 (34)
T ss_pred eEECCCCCCEeECC------------cCCCcCcCCCC
Confidence 36677777544321 14556777764
No 96
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=61.02 E-value=5.6 Score=27.71 Aligned_cols=24 Identities=54% Similarity=1.047 Sum_probs=14.1
Q ss_pred CCCccCCCCCCccCCh----HHHHHHHH
Q psy5888 228 KDRYACKFCGKVFPRS----ANLTRHLR 251 (447)
Q Consensus 228 ~k~~~C~~Cgk~F~~~----~~L~~H~r 251 (447)
+....|.+|++.+... .+|.+|++
T Consensus 14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 14 KKKAKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp SS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred cCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 3457788888887764 67777774
No 97
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=60.81 E-value=5.8 Score=26.76 Aligned_cols=13 Identities=23% Similarity=0.836 Sum_probs=6.1
Q ss_pred cCCCCCCcccchh
Q psy5888 260 KCKYCERSFSISS 272 (447)
Q Consensus 260 ~C~~C~k~F~s~~ 272 (447)
.|+.|+..|.-..
T Consensus 4 ~Cp~C~~~y~i~d 16 (36)
T PF13717_consen 4 TCPNCQAKYEIDD 16 (36)
T ss_pred ECCCCCCEEeCCH
Confidence 3555555544443
No 98
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=60.58 E-value=5.3 Score=36.64 Aligned_cols=11 Identities=45% Similarity=1.032 Sum_probs=5.7
Q ss_pred CCCcccCCCCC
Q psy5888 255 GEQPYKCKYCE 265 (447)
Q Consensus 255 ~ekp~~C~~C~ 265 (447)
|+-|-+|++|+
T Consensus 146 ge~P~~CPiCg 156 (166)
T COG1592 146 GEAPEVCPICG 156 (166)
T ss_pred CCCCCcCCCCC
Confidence 44455555555
No 99
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=58.83 E-value=5.4 Score=37.00 Aligned_cols=31 Identities=23% Similarity=0.718 Sum_probs=16.4
Q ss_pred CcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCccc
Q psy5888 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCF 297 (447)
Q Consensus 257 kp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F 297 (447)
.-|.|+.|+.+|.....+. .-|.|+.||...
T Consensus 116 ~~Y~Cp~C~~rytf~eA~~----------~~F~Cp~Cg~~L 146 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAME----------YGFRCPQCGEML 146 (178)
T ss_pred CEEECCCCCcEEeHHHHhh----------cCCcCCCCCCCC
Confidence 3466666666655554431 136666666543
No 100
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=58.70 E-value=5.6 Score=36.10 Aligned_cols=33 Identities=12% Similarity=0.307 Sum_probs=26.5
Q ss_pred CCCccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCccc
Q psy5888 228 KDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFS 269 (447)
Q Consensus 228 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~ 269 (447)
...|.|+.|+..|.....+. .-|.|+.||....
T Consensus 107 ~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 107 NMFFICPNMCVRFTFNEAME---------LNFTCPRCGAMLD 139 (158)
T ss_pred CCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEee
Confidence 35699999999999877774 2599999997654
No 101
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=58.11 E-value=3.2 Score=39.67 Aligned_cols=32 Identities=25% Similarity=0.659 Sum_probs=22.2
Q ss_pred CCCCCCccCCCCCCccCChHHHHHHHHHhcCC
Q psy5888 225 GKPKDRYACKFCGKVFPRSANLTRHLRTHTGE 256 (447)
Q Consensus 225 ~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~e 256 (447)
...+.+|.|..|+|.|.-..-+..|+...|.+
T Consensus 72 e~~~~K~~C~lc~KlFkg~eFV~KHI~nKH~e 103 (214)
T PF04959_consen 72 EEDEDKWRCPLCGKLFKGPEFVRKHIFNKHPE 103 (214)
T ss_dssp SSSSEEEEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred HHcCCEECCCCCCcccCChHHHHHHHhhcCHH
Confidence 34556788999999999888888888865543
No 102
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=58.04 E-value=3.9 Score=33.23 Aligned_cols=10 Identities=40% Similarity=1.016 Sum_probs=5.2
Q ss_pred CCCCCCCccc
Q psy5888 288 FKCPLCDRCF 297 (447)
Q Consensus 288 ~~C~~C~k~F 297 (447)
|.|..|+..|
T Consensus 54 W~C~kCg~~f 63 (89)
T COG1997 54 WKCRKCGAKF 63 (89)
T ss_pred EEcCCCCCee
Confidence 5555555544
No 103
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=57.99 E-value=2.9 Score=37.85 Aligned_cols=15 Identities=0% Similarity=-0.336 Sum_probs=12.1
Q ss_pred cccCCCCCCCCChhh
Q psy5888 316 TILDDRNGGIPSPSM 330 (447)
Q Consensus 316 ~~C~~C~k~f~s~~~ 330 (447)
+.|..||+.|.+-..
T Consensus 29 ~~c~~c~~~f~~~e~ 43 (154)
T PRK00464 29 RECLACGKRFTTFER 43 (154)
T ss_pred eeccccCCcceEeEe
Confidence 889999999975443
No 104
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=57.85 E-value=8.8 Score=35.59 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=16.3
Q ss_pred CCCCCCCCcccCCchhHHHHHhhhcCCCCcccCCCCCCC
Q psy5888 287 PFKCPLCDRCFGQQTNLDRHLKKHEADGPTILDDRNGGI 325 (447)
Q Consensus 287 p~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~f 325 (447)
-|.|+.|+..|.....+. .-|.|+.||...
T Consensus 117 ~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L 146 (178)
T PRK06266 117 FFFCPNCHIRFTFDEAME---------YGFRCPQCGEML 146 (178)
T ss_pred EEECCCCCcEEeHHHHhh---------cCCcCCCCCCCC
Confidence 356666666655554432 246666666553
No 105
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=57.20 E-value=8.9 Score=34.28 Aligned_cols=36 Identities=25% Similarity=0.657 Sum_probs=19.1
Q ss_pred CcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCccc
Q psy5888 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCF 297 (447)
Q Consensus 257 kp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F 297 (447)
.-|.|+.|+..|.....+.. .+. ...|.|+.||...
T Consensus 98 ~~Y~Cp~C~~~y~~~ea~~~----~d~-~~~f~Cp~Cg~~l 133 (147)
T smart00531 98 AYYKCPNCQSKYTFLEANQL----LDM-DGTFTCPRCGEEL 133 (147)
T ss_pred cEEECcCCCCEeeHHHHHHh----cCC-CCcEECCCCCCEE
Confidence 45777777777665433221 111 2237777777654
No 106
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=56.03 E-value=7.5 Score=29.33 Aligned_cols=12 Identities=17% Similarity=0.495 Sum_probs=6.4
Q ss_pred cccCCCCCCccc
Q psy5888 258 PYKCKYCERSFS 269 (447)
Q Consensus 258 p~~C~~C~k~F~ 269 (447)
.|.|+.||....
T Consensus 27 ~F~CPnCGe~~I 38 (61)
T COG2888 27 KFPCPNCGEVEI 38 (61)
T ss_pred EeeCCCCCceee
Confidence 356666664433
No 107
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=55.64 E-value=8.8 Score=27.62 Aligned_cols=25 Identities=60% Similarity=1.144 Sum_probs=19.0
Q ss_pred CCccCCCCCCccCCh-----HHHHHHHH-Hh
Q psy5888 229 DRYACKFCGKVFPRS-----ANLTRHLR-TH 253 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~-----~~L~~H~r-~H 253 (447)
..-.|.+|++.+... ++|.+|++ .|
T Consensus 17 ~~a~C~~C~~~l~~~~~~gTs~L~rHl~~~h 47 (50)
T smart00614 17 QRAKCKYCGKKLSRSSKGGTSNLRRHLRRKH 47 (50)
T ss_pred eEEEecCCCCEeeeCCCCCcHHHHHHHHhHC
Confidence 346799999988765 58888887 44
No 108
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=55.09 E-value=12 Score=36.59 Aligned_cols=80 Identities=21% Similarity=0.446 Sum_probs=42.9
Q ss_pred hcCCCcccCCCCCCcccchhhHHHHhhhhcc-CCCCCCCCCCCcccCCchhH-------HHHHhhh----cCCCCcccCC
Q psy5888 253 HTGEQPYKCKYCERSFSISSNLQRHVRNIHN-KEKPFKCPLCDRCFGQQTNL-------DRHLKKH----EADGPTILDD 320 (447)
Q Consensus 253 H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~-~~kp~~C~~C~k~F~~~~~L-------~~Hlr~H----~~ekp~~C~~ 320 (447)
.+|.+-|+|.+|....--... ..|+.+... ....|+|..|++. ...+-| ..|.+.. ...+++.|++
T Consensus 137 ~hGGrif~CsfC~~flCEDDQ-FEHQAsCQvLe~E~~KC~SCNrl-Gq~sCLRCK~cfCddHvrrKg~ky~k~k~~PCPK 214 (314)
T PF06524_consen 137 DHGGRIFKCSFCDNFLCEDDQ-FEHQASCQVLESETFKCQSCNRL-GQYSCLRCKICFCDDHVRRKGFKYEKGKPIPCPK 214 (314)
T ss_pred cCCCeEEEeecCCCeeeccch-hhhhhhhhhhhcccccccccccc-cchhhhheeeeehhhhhhhcccccccCCCCCCCC
Confidence 456677888888644333332 234432111 1234666666542 222222 3465432 2347899999
Q ss_pred CCCCCCChhhhhhc
Q psy5888 321 RNGGIPSPSMIHNR 334 (447)
Q Consensus 321 C~k~f~s~~~l~~H 334 (447)
|++.......|-.-
T Consensus 215 Cg~et~eTkdLSmS 228 (314)
T PF06524_consen 215 CGYETQETKDLSMS 228 (314)
T ss_pred CCCcccccccceee
Confidence 99887766665433
No 109
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=54.50 E-value=3.7 Score=29.07 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=6.4
Q ss_pred ccCCCCCCccC
Q psy5888 231 YACKFCGKVFP 241 (447)
Q Consensus 231 ~~C~~Cgk~F~ 241 (447)
|.|..||..|.
T Consensus 4 y~C~~CG~~~~ 14 (46)
T PRK00398 4 YKCARCGREVE 14 (46)
T ss_pred EECCCCCCEEE
Confidence 56666665554
No 110
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=54.12 E-value=7.9 Score=35.51 Aligned_cols=13 Identities=46% Similarity=1.140 Sum_probs=7.4
Q ss_pred ccCCCCCCCCCCC
Q psy5888 282 HNKEKPFKCPLCD 294 (447)
Q Consensus 282 H~~~kp~~C~~C~ 294 (447)
|.++-|..|++||
T Consensus 144 ~~ge~P~~CPiCg 156 (166)
T COG1592 144 HEGEAPEVCPICG 156 (166)
T ss_pred ccCCCCCcCCCCC
Confidence 3445566666665
No 111
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=53.38 E-value=8 Score=29.17 Aligned_cols=10 Identities=20% Similarity=0.733 Sum_probs=6.1
Q ss_pred cccCCCCCCc
Q psy5888 258 PYKCKYCERS 267 (447)
Q Consensus 258 p~~C~~C~k~ 267 (447)
.|.|+.||+.
T Consensus 25 ~F~CPnCG~~ 34 (59)
T PRK14890 25 KFLCPNCGEV 34 (59)
T ss_pred EeeCCCCCCe
Confidence 4666666655
No 112
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=53.11 E-value=8.7 Score=27.20 Aligned_cols=27 Identities=22% Similarity=0.618 Sum_probs=15.2
Q ss_pred ccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcc
Q psy5888 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSF 268 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F 268 (447)
|.|..||..|.-. ...+..|+.||...
T Consensus 3 Y~C~~Cg~~~~~~-----------~~~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIK-----------SKDVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecC-----------CCCceECCCCCceE
Confidence 6677777665422 22346677776543
No 113
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=52.93 E-value=3.9 Score=29.56 Aligned_cols=11 Identities=45% Similarity=1.201 Sum_probs=5.6
Q ss_pred ccCCCCCCccC
Q psy5888 231 YACKFCGKVFP 241 (447)
Q Consensus 231 ~~C~~Cgk~F~ 241 (447)
|+|..||..|.
T Consensus 6 y~C~~Cg~~fe 16 (52)
T TIGR02605 6 YRCTACGHRFE 16 (52)
T ss_pred EEeCCCCCEeE
Confidence 45555555444
No 114
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=52.02 E-value=8 Score=34.05 Aligned_cols=26 Identities=46% Similarity=0.617 Sum_probs=22.1
Q ss_pred CCccCCCCCCccCChHHHHHHHHHhcCCC
Q psy5888 229 DRYACKFCGKVFPRSANLTRHLRTHTGEQ 257 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~~~L~~H~r~H~~ek 257 (447)
+...|-+|||.|+ .|++|+.+|.+--
T Consensus 75 D~IicLEDGkkfK---SLKRHL~t~~gmT 100 (148)
T COG4957 75 DYIICLEDGKKFK---SLKRHLTTHYGLT 100 (148)
T ss_pred CeEEEeccCcchH---HHHHHHhcccCCC
Confidence 4577999999998 7999999998754
No 115
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=50.77 E-value=6 Score=29.21 Aligned_cols=39 Identities=26% Similarity=0.699 Sum_probs=17.0
Q ss_pred ccCCC--CCCccCChHHHHHHHHHhcCCCcccCCC----CCCcccc
Q psy5888 231 YACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKY----CERSFSI 270 (447)
Q Consensus 231 ~~C~~--Cgk~F~~~~~L~~H~r~H~~ekp~~C~~----C~k~F~s 270 (447)
..|+. |...+. +..|..|+...-..++..|.+ |...|..
T Consensus 10 v~C~~~cc~~~i~-r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~ 54 (60)
T PF02176_consen 10 VPCPNGCCNEMIP-RKELDDHLENECPKRPVPCPYSPYGCKERVPR 54 (60)
T ss_dssp EE-TT--S-BEEE-CCCHHHHHHTTSTTSEEE-SS----S--EEEH
T ss_pred eeCCCCCccccee-HHHHHHHHHccCCCCcEECCCCCCCCCCccch
Confidence 44555 333333 235566665555555555665 5555443
No 116
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=50.40 E-value=7.8 Score=28.17 Aligned_cols=28 Identities=25% Similarity=0.743 Sum_probs=15.6
Q ss_pred CccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCc
Q psy5888 230 RYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERS 267 (447)
Q Consensus 230 ~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~ 267 (447)
.|.|-.||+.|.. -.......|++||.+
T Consensus 6 ~Y~C~~Cg~~~~~----------~~~~~~irCp~Cg~r 33 (49)
T COG1996 6 EYKCARCGREVEL----------DQETRGIRCPYCGSR 33 (49)
T ss_pred EEEhhhcCCeeeh----------hhccCceeCCCCCcE
Confidence 4777777776611 112234567777654
No 117
>KOG1924|consensus
Probab=50.05 E-value=68 Score=36.31 Aligned_cols=9 Identities=22% Similarity=0.268 Sum_probs=3.7
Q ss_pred CCccccccc
Q psy5888 67 EEQPLDLRV 75 (447)
Q Consensus 67 ~~~~~~~~~ 75 (447)
|-+-||+-|
T Consensus 448 yr~~l~id~ 456 (1102)
T KOG1924|consen 448 YRFRLDIDL 456 (1102)
T ss_pred hhhcccCcH
Confidence 444444433
No 118
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=49.57 E-value=13 Score=33.25 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=21.5
Q ss_pred CCCCCCCCCcccCCchhHHHHHhhhcCCCCcccCCCCCCC
Q psy5888 286 KPFKCPLCDRCFGQQTNLDRHLKKHEADGPTILDDRNGGI 325 (447)
Q Consensus 286 kp~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~f 325 (447)
.-|.|+.|+..|.....+.. . . ....|.|+.||...
T Consensus 98 ~~Y~Cp~C~~~y~~~ea~~~-~--d-~~~~f~Cp~Cg~~l 133 (147)
T smart00531 98 AYYKCPNCQSKYTFLEANQL-L--D-MDGTFTCPRCGEEL 133 (147)
T ss_pred cEEECcCCCCEeeHHHHHHh-c--C-CCCcEECCCCCCEE
Confidence 35788888887775433221 0 1 13348888888764
No 119
>KOG4124|consensus
Probab=49.55 E-value=4 Score=41.33 Aligned_cols=28 Identities=14% Similarity=-0.156 Sum_probs=19.7
Q ss_pred CCCCCCcCCCCCCCCCCcCCCcchHHHh
Q psy5888 126 RSSPPNIKSRSLSTYPVLFPHPVMLEAM 153 (447)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~p~p~~l~~m 153 (447)
+.+-.....+.|....+.|.-+++.+.|
T Consensus 217 ~~~~~~~T~~~l~~HS~N~~~~~Sa~n~ 244 (442)
T KOG4124|consen 217 PESLVMDTSSPLSDHSMNIDVGESAANN 244 (442)
T ss_pred cccccccccchhhhccccCCCCccHHHH
Confidence 3344445667788888889888886665
No 120
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=49.06 E-value=8.4 Score=36.82 Aligned_cols=26 Identities=23% Similarity=0.706 Sum_probs=15.2
Q ss_pred CCCCCCCCCcccCCchhHHHHHhhhc
Q psy5888 286 KPFKCPLCDRCFGQQTNLDRHLKKHE 311 (447)
Q Consensus 286 kp~~C~~C~k~F~~~~~L~~Hlr~H~ 311 (447)
..|.|++|+|.|.-..-+.+|+..-|
T Consensus 76 ~K~~C~lc~KlFkg~eFV~KHI~nKH 101 (214)
T PF04959_consen 76 DKWRCPLCGKLFKGPEFVRKHIFNKH 101 (214)
T ss_dssp EEEEE-SSS-EESSHHHHHHHHHHH-
T ss_pred CEECCCCCCcccCChHHHHHHHhhcC
Confidence 34777777777777777777765533
No 121
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=48.95 E-value=5.3 Score=40.32 Aligned_cols=34 Identities=29% Similarity=0.640 Sum_probs=18.5
Q ss_pred CCccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCC
Q psy5888 229 DRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCE 265 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~ 265 (447)
.+-.|++||..=. .+ + .+.....|.+-..|..|+
T Consensus 186 ~~~~CPvCGs~P~-~s-~-v~~~~~~G~RyL~CslC~ 219 (309)
T PRK03564 186 QRQFCPVCGSMPV-SS-V-VQIGTTQGLRYLHCNLCE 219 (309)
T ss_pred CCCCCCCCCCcch-hh-e-eeccCCCCceEEEcCCCC
Confidence 3467888885311 11 1 122334566777788886
No 122
>KOG2593|consensus
Probab=48.01 E-value=14 Score=38.70 Aligned_cols=35 Identities=26% Similarity=0.655 Sum_probs=20.5
Q ss_pred CCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCC
Q psy5888 256 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCD 294 (447)
Q Consensus 256 ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~ 294 (447)
..-|.|+.|.+.|.....++- +-.....|.|..|+
T Consensus 126 ~~~Y~Cp~C~kkyt~Lea~~L----~~~~~~~F~C~~C~ 160 (436)
T KOG2593|consen 126 VAGYVCPNCQKKYTSLEALQL----LDNETGEFHCENCG 160 (436)
T ss_pred cccccCCccccchhhhHHHHh----hcccCceEEEecCC
Confidence 345777777777777655431 22222347777775
No 123
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=47.83 E-value=9.8 Score=42.85 Aligned_cols=49 Identities=12% Similarity=0.295 Sum_probs=26.6
Q ss_pred ccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHHhhhcCCCCcccCCCCCC
Q psy5888 259 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGPTILDDRNGG 324 (447)
Q Consensus 259 ~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~ 324 (447)
..|..||+.|.-..- ..-+. .|.......|.+||+. ...+..|+.||..
T Consensus 436 l~C~~Cg~v~~Cp~C-d~~lt-~H~~~~~L~CH~Cg~~---------------~~~p~~Cp~Cgs~ 484 (730)
T COG1198 436 LLCRDCGYIAECPNC-DSPLT-LHKATGQLRCHYCGYQ---------------EPIPQSCPECGSE 484 (730)
T ss_pred eecccCCCcccCCCC-CcceE-EecCCCeeEeCCCCCC---------------CCCCCCCCCCCCC
Confidence 346666655443210 11122 3444556777777742 3467788888866
No 124
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=47.59 E-value=6 Score=26.83 Aligned_cols=11 Identities=36% Similarity=1.223 Sum_probs=5.9
Q ss_pred ccCCCCCCccc
Q psy5888 259 YKCKYCERSFS 269 (447)
Q Consensus 259 ~~C~~C~k~F~ 269 (447)
|+|..|+..|.
T Consensus 6 y~C~~Cg~~fe 16 (41)
T smart00834 6 YRCEDCGHTFE 16 (41)
T ss_pred EEcCCCCCEEE
Confidence 45555555554
No 125
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=47.20 E-value=7.3 Score=39.28 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=8.4
Q ss_pred hcCCCcccCCCCC
Q psy5888 253 HTGEQPYKCKYCE 265 (447)
Q Consensus 253 H~~ekp~~C~~C~ 265 (447)
..|.+-..|..|+
T Consensus 205 ~~G~RyL~CslC~ 217 (305)
T TIGR01562 205 ETGLRYLSCSLCA 217 (305)
T ss_pred CCCceEEEcCCCC
Confidence 3455667777775
No 126
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=47.00 E-value=20 Score=42.51 Aligned_cols=9 Identities=44% Similarity=1.058 Sum_probs=6.4
Q ss_pred CccCCCCCC
Q psy5888 230 RYACKFCGK 238 (447)
Q Consensus 230 ~~~C~~Cgk 238 (447)
.++|+.||.
T Consensus 667 ~rkCPkCG~ 675 (1337)
T PRK14714 667 RRRCPSCGT 675 (1337)
T ss_pred EEECCCCCC
Confidence 367888875
No 127
>KOG2807|consensus
Probab=46.73 E-value=17 Score=36.75 Aligned_cols=82 Identities=20% Similarity=0.303 Sum_probs=49.3
Q ss_pred CCccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhcc-CCCCC------------CCCCCCc
Q psy5888 229 DRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN-KEKPF------------KCPLCDR 295 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~-~~kp~------------~C~~C~k 295 (447)
.-|.|+.|.-.. -.-|..|++|+-......+|.+-.+ |. --++| .|-.|+
T Consensus 275 ~Gy~CP~Ckakv--------------CsLP~eCpiC~ltLVss~hLARSyh--hL~PL~~F~Eip~~~~~~~~~Cf~C~- 337 (378)
T KOG2807|consen 275 GGYFCPQCKAKV--------------CSLPIECPICSLTLVSSPHLARSYH--HLFPLKPFVEIPETEYNGSRFCFACQ- 337 (378)
T ss_pred CceeCCcccCee--------------ecCCccCCccceeEecchHHHHHHH--hhcCCcchhhccccccCCCcceeeec-
Confidence 348888887432 2357789999888888888877554 32 11111 144441
Q ss_pred ccCCchhHHHHHhhhcCCCCcccCCCCCCCCChhhhhhccCCCC
Q psy5888 296 CFGQQTNLDRHLKKHEADGPTILDDRNGGIPSPSMIHNRCRPPS 339 (447)
Q Consensus 296 ~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~f~s~~~l~~H~~~h~ 339 (447)
..-.....|.|..|...|...-....|...|.
T Consensus 338 ------------~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~ 369 (378)
T KOG2807|consen 338 ------------GELLSSGRYRCESCKNVFCLDCDVFIHESLHN 369 (378)
T ss_pred ------------cccCCCCcEEchhccceeeccchHHHHhhhhc
Confidence 01123345888888888877666666665554
No 128
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=46.68 E-value=7.3 Score=28.74 Aligned_cols=41 Identities=22% Similarity=0.597 Sum_probs=18.9
Q ss_pred CCcccCCC--CCCcccchhhHHHHhhhhccCCCCCCCCC----CCcccC
Q psy5888 256 EQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPL----CDRCFG 298 (447)
Q Consensus 256 ekp~~C~~--C~k~F~s~~~L~~H~~~~H~~~kp~~C~~----C~k~F~ 298 (447)
..+..|+. |...+. +..|..|+. .--..+...|.+ |+..+.
T Consensus 7 ~~~v~C~~~cc~~~i~-r~~l~~H~~-~~C~~~~v~C~~~~~GC~~~~~ 53 (60)
T PF02176_consen 7 FRPVPCPNGCCNEMIP-RKELDDHLE-NECPKRPVPCPYSPYGCKERVP 53 (60)
T ss_dssp TSEEE-TT--S-BEEE-CCCHHHHHH-TTSTTSEEE-SS----S--EEE
T ss_pred CCEeeCCCCCccccee-HHHHHHHHH-ccCCCCcEECCCCCCCCCCccc
Confidence 34556666 333343 345667766 233444566666 665553
No 129
>PHA00626 hypothetical protein
Probab=45.64 E-value=8.3 Score=28.75 Aligned_cols=10 Identities=10% Similarity=-0.263 Sum_probs=4.0
Q ss_pred cccCCCCCCC
Q psy5888 316 TILDDRNGGI 325 (447)
Q Consensus 316 ~~C~~C~k~f 325 (447)
|.|..|++.|
T Consensus 24 YkCkdCGY~f 33 (59)
T PHA00626 24 YVCCDCGYND 33 (59)
T ss_pred eEcCCCCCee
Confidence 3344444333
No 130
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=45.44 E-value=5.8 Score=27.63 Aligned_cols=10 Identities=40% Similarity=1.298 Sum_probs=4.1
Q ss_pred ccCCCCCCcc
Q psy5888 259 YKCKYCERSF 268 (447)
Q Consensus 259 ~~C~~C~k~F 268 (447)
|+|..||..|
T Consensus 6 y~C~~Cg~~f 15 (42)
T PF09723_consen 6 YRCEECGHEF 15 (42)
T ss_pred EEeCCCCCEE
Confidence 3344444443
No 131
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=43.95 E-value=18 Score=22.61 Aligned_cols=7 Identities=0% Similarity=-0.353 Sum_probs=2.7
Q ss_pred cCCCCCC
Q psy5888 318 LDDRNGG 324 (447)
Q Consensus 318 C~~C~k~ 324 (447)
|+.||+.
T Consensus 17 Cp~CG~~ 23 (26)
T PF10571_consen 17 CPHCGYD 23 (26)
T ss_pred CCCCCCC
Confidence 3333333
No 132
>KOG1701|consensus
Probab=43.75 E-value=11 Score=39.34 Aligned_cols=44 Identities=25% Similarity=0.454 Sum_probs=29.9
Q ss_pred CccCCCCCCccCChHHHHHHHH--HhcCCCcccCCCCCCcccchhhHH
Q psy5888 230 RYACKFCGKVFPRSANLTRHLR--THTGEQPYKCKYCERSFSISSNLQ 275 (447)
Q Consensus 230 ~~~C~~Cgk~F~~~~~L~~H~r--~H~~ekp~~C~~C~k~F~s~~~L~ 275 (447)
.-.|-.|+|...-...-..-|. .|. .-|+|..|++...-+..+.
T Consensus 274 ~~iC~~C~K~V~g~~~ac~Am~~~fHv--~CFtC~~C~r~L~Gq~FY~ 319 (468)
T KOG1701|consen 274 FGICAFCHKTVSGQGLAVEAMDQLFHV--QCFTCRTCRRQLAGQSFYQ 319 (468)
T ss_pred hhhhhhcCCcccCcchHHHHhhhhhcc--cceehHhhhhhhccccccc
Confidence 3469999988766655555554 343 4699999988777665543
No 133
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=43.39 E-value=13 Score=32.91 Aligned_cols=26 Identities=35% Similarity=0.654 Sum_probs=14.6
Q ss_pred CCCCCCCCcccCCchhHHHHHhhhcCCCC
Q psy5888 287 PFKCPLCDRCFGQQTNLDRHLKKHEADGP 315 (447)
Q Consensus 287 p~~C~~C~k~F~~~~~L~~Hlr~H~~ekp 315 (447)
-..|-+||+.|.. |++|++.|+|-.+
T Consensus 72 ~i~clecGk~~k~---LkrHL~~~~gltp 97 (132)
T PF05443_consen 72 YIICLECGKKFKT---LKRHLRTHHGLTP 97 (132)
T ss_dssp -EE-TBT--EESB---HHHHHHHTT-S-H
T ss_pred eeEEccCCcccch---HHHHHHHccCCCH
Confidence 3678888887754 4788888876543
No 134
>KOG1924|consensus
Probab=43.29 E-value=2.1e+02 Score=32.58 Aligned_cols=8 Identities=50% Similarity=1.103 Sum_probs=3.3
Q ss_pred CCCCCCCC
Q psy5888 186 SGLLNGHP 193 (447)
Q Consensus 186 ~~~~~~~p 193 (447)
.|-.+|.|
T Consensus 589 ~g~~Gg~p 596 (1102)
T KOG1924|consen 589 GGFLGGPP 596 (1102)
T ss_pred CCCCCCCC
Confidence 34444443
No 135
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.16 E-value=14 Score=31.31 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=6.1
Q ss_pred CcccCCCCCCcc
Q psy5888 257 QPYKCKYCERSF 268 (447)
Q Consensus 257 kp~~C~~C~k~F 268 (447)
.|..|++||+.|
T Consensus 25 dPiVsPytG~s~ 36 (129)
T COG4530 25 DPIVSPYTGKSY 36 (129)
T ss_pred CccccCcccccc
Confidence 444555555554
No 136
>KOG2593|consensus
Probab=42.42 E-value=15 Score=38.40 Aligned_cols=35 Identities=20% Similarity=0.522 Sum_probs=24.7
Q ss_pred CCccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCC
Q psy5888 229 DRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCER 266 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k 266 (447)
.-|.|+.|.+.|.....++. .--..--|.|..|+.
T Consensus 127 ~~Y~Cp~C~kkyt~Lea~~L---~~~~~~~F~C~~C~g 161 (436)
T KOG2593|consen 127 AGYVCPNCQKKYTSLEALQL---LDNETGEFHCENCGG 161 (436)
T ss_pred ccccCCccccchhhhHHHHh---hcccCceEEEecCCC
Confidence 45999999999986555442 332234599999975
No 137
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=42.02 E-value=7.4 Score=30.64 Aligned_cols=13 Identities=23% Similarity=0.513 Sum_probs=6.1
Q ss_pred CCCCC--CCCcccCC
Q psy5888 287 PFKCP--LCDRCFGQ 299 (447)
Q Consensus 287 p~~C~--~C~k~F~~ 299 (447)
-+.|. .||.+|..
T Consensus 27 Y~qC~N~eCg~tF~t 41 (72)
T PRK09678 27 YHQCQNVNCSATFIT 41 (72)
T ss_pred eeecCCCCCCCEEEE
Confidence 34444 45555543
No 138
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=41.76 E-value=5.3 Score=33.32 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=8.5
Q ss_pred cccCCCCCCcccc
Q psy5888 258 PYKCKYCERSFSI 270 (447)
Q Consensus 258 p~~C~~C~k~F~s 270 (447)
.+.|+.|+..+..
T Consensus 16 ~~~C~~C~~~~~~ 28 (104)
T TIGR01384 16 VYVCPSCGYEKEK 28 (104)
T ss_pred eEECcCCCCcccc
Confidence 4677777766554
No 139
>KOG0696|consensus
Probab=41.01 E-value=14 Score=38.88 Aligned_cols=56 Identities=21% Similarity=0.491 Sum_probs=35.9
Q ss_pred CccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCC
Q psy5888 230 RYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCD 294 (447)
Q Consensus 230 ~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~ 294 (447)
-|+|+.|. +..|.|.|.- .-|.|+--++.+.+...-..|...+|+-..|--|..||
T Consensus 73 GfQCqvC~--------fvvHkrChef-VtF~CPGadkg~dtDdpr~kHkf~~~tYssPTFCDhCG 128 (683)
T KOG0696|consen 73 GFQCQVCC--------FVVHKRCHEF-VTFSCPGADKGPDTDDPRSKHKFKIHTYSSPTFCDHCG 128 (683)
T ss_pred ceeeeEEe--------ehhhhhhcce-EEEECCCCCCCCCCCCcccccceeeeecCCCchhhhHH
Confidence 46666664 4466666643 34777777777777666666766566666666677776
No 140
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=40.99 E-value=14 Score=41.56 Aligned_cols=49 Identities=24% Similarity=0.596 Sum_probs=25.2
Q ss_pred ccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcc
Q psy5888 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRC 296 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~ 296 (447)
..|..||..|....- ..-+..|.......|.+|| |....|..|+.||..
T Consensus 436 l~C~~Cg~v~~Cp~C-d~~lt~H~~~~~L~CH~Cg----------------~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 436 LLCRDCGYIAECPNC-DSPLTLHKATGQLRCHYCG----------------YQEPIPQSCPECGSE 484 (730)
T ss_pred eecccCCCcccCCCC-CcceEEecCCCeeEeCCCC----------------CCCCCCCCCCCCCCC
Confidence 447777765543210 0012233334445566665 223457889999865
No 141
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=40.82 E-value=26 Score=21.84 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=11.9
Q ss_pred cCCCCCCccCChHHHHHHHH
Q psy5888 232 ACKFCGKVFPRSANLTRHLR 251 (447)
Q Consensus 232 ~C~~Cgk~F~~~~~L~~H~r 251 (447)
.|++|++.+ ....+..|+.
T Consensus 3 ~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 3 QCPVCFREV-PENLINSHLD 21 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHH
Confidence 477777766 4456666654
No 142
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=40.26 E-value=2.4 Score=42.24 Aligned_cols=75 Identities=19% Similarity=0.366 Sum_probs=26.2
Q ss_pred ccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHHhhh
Q psy5888 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~H 310 (447)
-.|++||.. ...+.|..-.. .|.+-..|..|+... |.. ..+|+.||..-.....+.. ...-
T Consensus 173 g~CPvCGs~-P~~s~l~~~~~--~G~R~L~Cs~C~t~W--------~~~-------R~~Cp~Cg~~~~~~l~~~~-~e~~ 233 (290)
T PF04216_consen 173 GYCPVCGSP-PVLSVLRGGER--EGKRYLHCSLCGTEW--------RFV-------RIKCPYCGNTDHEKLEYFT-VEGE 233 (290)
T ss_dssp SS-TTT----EEEEEEE--------EEEEEETTT--EE--------E---------TTS-TTT---SS-EEE--------
T ss_pred CcCCCCCCc-CceEEEecCCC--CccEEEEcCCCCCee--------eec-------CCCCcCCCCCCCcceeeEe-cCCC
Confidence 468888842 11111111111 255667788886321 111 2578888865444333211 1111
Q ss_pred cCCCCcccCCCCCC
Q psy5888 311 EADGPTILDDRNGG 324 (447)
Q Consensus 311 ~~ekp~~C~~C~k~ 324 (447)
.+.+.+.|+.|+.-
T Consensus 234 ~~~rve~C~~C~~Y 247 (290)
T PF04216_consen 234 PAYRVEVCESCGSY 247 (290)
T ss_dssp -SEEEEEETTTTEE
T ss_pred CcEEEEECCcccch
Confidence 23455677777643
No 143
>KOG2071|consensus
Probab=40.01 E-value=23 Score=38.48 Aligned_cols=15 Identities=0% Similarity=-0.327 Sum_probs=11.2
Q ss_pred chhhhccccccccCC
Q psy5888 347 YFEEIRSFMGKVSAD 361 (447)
Q Consensus 347 ~~~~~c~~Cgk~f~~ 361 (447)
...+.|.+|+..|..
T Consensus 511 e~~~~C~IC~EkFe~ 525 (579)
T KOG2071|consen 511 ERQASCPICQEKFEV 525 (579)
T ss_pred ccccCCcccccccce
Confidence 344577999998875
No 144
>PF12907 zf-met2: Zinc-binding
Probab=39.17 E-value=6.4 Score=27.37 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=5.4
Q ss_pred hHHHHhhhhccC
Q psy5888 273 NLQRHVRNIHNK 284 (447)
Q Consensus 273 ~L~~H~~~~H~~ 284 (447)
.|..|..+.|.+
T Consensus 19 ~L~eH~enKHpK 30 (40)
T PF12907_consen 19 QLKEHAENKHPK 30 (40)
T ss_pred HHHHHHHccCCC
Confidence 344444444443
No 145
>PF14353 CpXC: CpXC protein
Probab=39.14 E-value=30 Score=29.84 Aligned_cols=20 Identities=0% Similarity=-0.248 Sum_probs=11.3
Q ss_pred CcccCCCCCCCCChhhhhhc
Q psy5888 315 PTILDDRNGGIPSPSMIHNR 334 (447)
Q Consensus 315 p~~C~~C~k~f~s~~~l~~H 334 (447)
.|.|+.||..|.-.+.+..|
T Consensus 38 ~~~CP~Cg~~~~~~~p~lY~ 57 (128)
T PF14353_consen 38 SFTCPSCGHKFRLEYPLLYH 57 (128)
T ss_pred EEECCCCCCceecCCCEEEE
Confidence 45666666666554444444
No 146
>KOG1280|consensus
Probab=39.05 E-value=23 Score=36.07 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=14.1
Q ss_pred CCCCCCCCcccCCchhHHHHHhhhcCC
Q psy5888 287 PFKCPLCDRCFGQQTNLDRHLKKHEAD 313 (447)
Q Consensus 287 p~~C~~C~k~F~~~~~L~~Hlr~H~~e 313 (447)
.|.|++|++.=.....|..|....|.+
T Consensus 79 SftCPyC~~~Gfte~~f~~Hv~s~Hpd 105 (381)
T KOG1280|consen 79 SFTCPYCGIMGFTERQFGTHVLSQHPE 105 (381)
T ss_pred cccCCcccccccchhHHHHHhhhcCcc
Confidence 456666655544555555555443333
No 147
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=38.39 E-value=23 Score=31.02 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=9.5
Q ss_pred CCCCCCCCcccCCc
Q psy5888 287 PFKCPLCDRCFGQQ 300 (447)
Q Consensus 287 p~~C~~C~k~F~~~ 300 (447)
.|+|..|++.|...
T Consensus 53 RyrC~~C~~tf~~~ 66 (129)
T COG3677 53 RYKCKSCGSTFTVE 66 (129)
T ss_pred ccccCCcCcceeee
Confidence 37777777777544
No 148
>KOG4124|consensus
Probab=38.31 E-value=9.7 Score=38.70 Aligned_cols=50 Identities=24% Similarity=0.501 Sum_probs=33.2
Q ss_pred CCCCCCCC--CCcccCCchhHHHHHhh-hc------------------CCCCcccCCCCCCCCChhhhhhc
Q psy5888 285 EKPFKCPL--CDRCFGQQTNLDRHLKK-HE------------------ADGPTILDDRNGGIPSPSMIHNR 334 (447)
Q Consensus 285 ~kp~~C~~--C~k~F~~~~~L~~Hlr~-H~------------------~ekp~~C~~C~k~f~s~~~l~~H 334 (447)
.++|+|.+ |.+.+.....|+.|... |. ..|+|.|++|.+.++....|.-|
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~ 417 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYH 417 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCce
Confidence 46789976 99999888888887654 22 13567777777666554444443
No 149
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=37.20 E-value=14 Score=29.12 Aligned_cols=17 Identities=0% Similarity=-0.212 Sum_probs=8.4
Q ss_pred CCcccC--CCCCCCCChhh
Q psy5888 314 GPTILD--DRNGGIPSPSM 330 (447)
Q Consensus 314 kp~~C~--~C~k~f~s~~~ 330 (447)
.-+.|. .||.+|.....
T Consensus 26 ~Y~qC~N~eCg~tF~t~es 44 (72)
T PRK09678 26 RYHQCQNVNCSATFITYES 44 (72)
T ss_pred eeeecCCCCCCCEEEEEEE
Confidence 334555 55555544333
No 150
>KOG0782|consensus
Probab=35.82 E-value=8.8 Score=41.37 Aligned_cols=27 Identities=30% Similarity=0.634 Sum_probs=13.8
Q ss_pred hHHHHhhhhccCCCCCCCCCCCcccCCc
Q psy5888 273 NLQRHVRNIHNKEKPFKCPLCDRCFGQQ 300 (447)
Q Consensus 273 ~L~~H~~~~H~~~kp~~C~~C~k~F~~~ 300 (447)
.|.+|-. +|....--+|..|++.|.++
T Consensus 240 ~fvrHHW-VHrrRqeGkC~~CgKgFQQK 266 (1004)
T KOG0782|consen 240 GFVRHHW-VHRRRQEGKCNTCGKGFQQK 266 (1004)
T ss_pred cchHHhH-hhHhhhccccchhhhhhhhh
Confidence 4445544 45544444555565555443
No 151
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=35.30 E-value=26 Score=35.13 Aligned_cols=92 Identities=20% Similarity=0.312 Sum_probs=56.3
Q ss_pred CccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhcc------CCCC-------CCCCCCCcc
Q psy5888 230 RYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN------KEKP-------FKCPLCDRC 296 (447)
Q Consensus 230 ~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~------~~kp-------~~C~~C~k~ 296 (447)
-|.|+.|.-.- -.-|..|+.|.-......+|.+-.. |. .++| -.|-.|.-.
T Consensus 308 Gy~CP~CktkV--------------CsLPi~CP~Csl~LilsthLarSyh--hL~PLk~f~E~p~~~~~ks~~Cf~CQ~~ 371 (421)
T COG5151 308 GYECPVCKTKV--------------CSLPISCPICSLQLILSTHLARSYH--HLYPLKPFVEKPEGTNPKSTHCFVCQGP 371 (421)
T ss_pred ceeCCccccee--------------ecCCccCcchhHHHHHHHHHHHHHH--hhccCcccccccCCCCCCCccceeccCC
Confidence 47888875321 2257789999887777777766543 22 1222 237777777
Q ss_pred cCCchhHHHHH-hhhcCCCCcccCCCCCCCCChhhhhhccCCCCC
Q psy5888 297 FGQQTNLDRHL-KKHEADGPTILDDRNGGIPSPSMIHNRCRPPSG 340 (447)
Q Consensus 297 F~~~~~L~~Hl-r~H~~ekp~~C~~C~k~f~s~~~l~~H~~~h~~ 340 (447)
|.-... |- -.-+....|.|+.|...|...-..-.|...|.+
T Consensus 372 fp~~~~---~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~C 413 (421)
T COG5151 372 FPKPPV---SPFDESTSSGRYQCELCKSTFCSDCDVFIHETLHFC 413 (421)
T ss_pred CCCCCC---CcccccccccceechhhhhhhhhhhHHHHHHHHhhC
Confidence 754321 11 111223458999999999887777777766654
No 152
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=35.22 E-value=27 Score=23.04 Aligned_cols=8 Identities=25% Similarity=0.895 Sum_probs=3.4
Q ss_pred ccCCCCCC
Q psy5888 259 YKCKYCER 266 (447)
Q Consensus 259 ~~C~~C~k 266 (447)
.+|+.||.
T Consensus 18 irC~~CG~ 25 (32)
T PF03604_consen 18 IRCPECGH 25 (32)
T ss_dssp SSBSSSS-
T ss_pred EECCcCCC
Confidence 44555543
No 153
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=34.33 E-value=29 Score=30.49 Aligned_cols=13 Identities=31% Similarity=0.692 Sum_probs=6.9
Q ss_pred ccCCCCCCcccch
Q psy5888 259 YKCKYCERSFSIS 271 (447)
Q Consensus 259 ~~C~~C~k~F~s~ 271 (447)
++|..||+.|...
T Consensus 2 H~Ct~Cg~~f~dg 14 (131)
T PF09845_consen 2 HQCTKCGRVFEDG 14 (131)
T ss_pred cccCcCCCCcCCC
Confidence 4555555555543
No 154
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=34.09 E-value=41 Score=32.80 Aligned_cols=81 Identities=17% Similarity=0.411 Sum_probs=47.5
Q ss_pred ccCCCCCCCccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCch
Q psy5888 222 NNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQT 301 (447)
Q Consensus 222 ~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~ 301 (447)
+......+.|.|..|...+.+ ++-....--.|..|.+.|.-.-. .-|. |---|.|+.|+..|.-..
T Consensus 104 ~~ip~~drqFaC~~Cd~~WwR--------rvp~rKeVSRCr~C~~rYDPVP~--dkmw----G~aef~C~~C~h~F~G~~ 169 (278)
T PF15135_consen 104 NLIPSVDRQFACSSCDHMWWR--------RVPQRKEVSRCRKCRKRYDPVPC--DKMW----GIAEFHCPKCRHNFRGFA 169 (278)
T ss_pred ccccccceeeeccccchHHHh--------ccCcccccccccccccccCCCcc--cccc----ceeeeecccccccchhhh
Confidence 333344467999999764432 22222334679999988865432 1122 223499999999997553
Q ss_pred hHHHHHhhhcCCCCcccCCCCCCC
Q psy5888 302 NLDRHLKKHEADGPTILDDRNGGI 325 (447)
Q Consensus 302 ~L~~Hlr~H~~ekp~~C~~C~k~f 325 (447)
.+ .-+-.|-.|+...
T Consensus 170 qm---------~v~sPCy~C~~~v 184 (278)
T PF15135_consen 170 QM---------GVPSPCYGCGNPV 184 (278)
T ss_pred hc---------CCCCCccCCCCcc
Confidence 32 2334566677654
No 155
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.10 E-value=15 Score=39.73 Aligned_cols=34 Identities=26% Similarity=0.634 Sum_probs=14.6
Q ss_pred ccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCC
Q psy5888 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCE 265 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~ 265 (447)
..|..||....... -...+..|.......|.+||
T Consensus 214 ~~C~~Cg~~~~C~~-C~~~l~~h~~~~~l~Ch~Cg 247 (505)
T TIGR00595 214 LLCRSCGYILCCPN-CDVSLTYHKKEGKLRCHYCG 247 (505)
T ss_pred eEhhhCcCccCCCC-CCCceEEecCCCeEEcCCCc
Confidence 35666665443221 01122334344445555555
No 156
>KOG0696|consensus
Probab=32.59 E-value=11 Score=39.58 Aligned_cols=61 Identities=28% Similarity=0.468 Sum_probs=47.9
Q ss_pred cCCCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHH-hhhcCCCCcccCCCCCC
Q psy5888 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHL-KKHEADGPTILDDRNGG 324 (447)
Q Consensus 254 ~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hl-r~H~~ekp~~C~~C~k~ 324 (447)
-|.+-|+|++|. +..|.+ .|.-. .|.|+-=++.+.....-.+|. +.|+-..|-.|+.||.-
T Consensus 69 fgKQGfQCqvC~--------fvvHkr-ChefV-tF~CPGadkg~dtDdpr~kHkf~~~tYssPTFCDhCGsL 130 (683)
T KOG0696|consen 69 FGKQGFQCQVCC--------FVVHKR-CHEFV-TFSCPGADKGPDTDDPRSKHKFKIHTYSSPTFCDHCGSL 130 (683)
T ss_pred cccCceeeeEEe--------ehhhhh-hcceE-EEECCCCCCCCCCCCcccccceeeeecCCCchhhhHHHH
Confidence 456779999985 557877 66544 499999888888888888884 67888888899999855
No 157
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=31.26 E-value=24 Score=25.64 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=5.7
Q ss_pred cccCCCCCCccc
Q psy5888 258 PYKCKYCERSFS 269 (447)
Q Consensus 258 p~~C~~C~k~F~ 269 (447)
.+.|..||..|.
T Consensus 4 ~l~C~dCg~~Fv 15 (49)
T PF13451_consen 4 TLTCKDCGAEFV 15 (49)
T ss_pred eEEcccCCCeEE
Confidence 344555554444
No 158
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.14 E-value=23 Score=38.19 Aligned_cols=14 Identities=36% Similarity=0.876 Sum_probs=7.2
Q ss_pred ccCCCCCCCCCCCc
Q psy5888 282 HNKEKPFKCPLCDR 295 (447)
Q Consensus 282 H~~~kp~~C~~C~k 295 (447)
|.......|..||.
T Consensus 235 h~~~~~l~Ch~Cg~ 248 (505)
T TIGR00595 235 HKKEGKLRCHYCGY 248 (505)
T ss_pred ecCCCeEEcCCCcC
Confidence 33344456666654
No 159
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=30.10 E-value=37 Score=30.66 Aligned_cols=12 Identities=33% Similarity=0.822 Sum_probs=6.3
Q ss_pred cccCCCCCCccc
Q psy5888 258 PYKCKYCERSFS 269 (447)
Q Consensus 258 p~~C~~C~k~F~ 269 (447)
-.+|..|++.|-
T Consensus 14 vv~C~~c~kWFC 25 (152)
T PF09416_consen 14 VVKCNTCNKWFC 25 (152)
T ss_dssp EEEETTTTEEEE
T ss_pred EeEcCCCCcEee
Confidence 345555555553
No 160
>PRK14873 primosome assembly protein PriA; Provisional
Probab=29.69 E-value=24 Score=39.52 Aligned_cols=8 Identities=0% Similarity=-0.404 Sum_probs=3.9
Q ss_pred cccCCCCC
Q psy5888 316 TILDDRNG 323 (447)
Q Consensus 316 ~~C~~C~k 323 (447)
+.|+.|+.
T Consensus 423 ~~Cp~Cgs 430 (665)
T PRK14873 423 WRCPRCGS 430 (665)
T ss_pred ccCCCCcC
Confidence 44555544
No 161
>KOG2461|consensus
Probab=29.68 E-value=92 Score=32.65 Aligned_cols=43 Identities=9% Similarity=-0.217 Sum_probs=17.3
Q ss_pred HHHHhcCCCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCC
Q psy5888 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPL 292 (447)
Q Consensus 249 H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~ 292 (447)
|...+++..+..+.++.+.+.....+..|.. .|.++..+.+..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 364 (396)
T KOG2461|consen 322 SEVPATVSVWTGETIPVRTPAGQLIYTQSHS-MEVAEPTDMAPN 364 (396)
T ss_pred ccccccccccCcCcccccccccccchhhhhh-cccCCCCccccc
Confidence 3333444444444444444444434444433 344444443333
No 162
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=29.27 E-value=27 Score=22.72 Aligned_cols=9 Identities=0% Similarity=-0.093 Sum_probs=4.7
Q ss_pred CCcccCCCC
Q psy5888 314 GPTILDDRN 322 (447)
Q Consensus 314 kp~~C~~C~ 322 (447)
..|.|+.|+
T Consensus 18 ~~~vCp~C~ 26 (30)
T PF08274_consen 18 ELLVCPECG 26 (30)
T ss_dssp SSEEETTTT
T ss_pred CEEeCCccc
Confidence 345555554
No 163
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=29.01 E-value=15 Score=24.80 Aligned_cols=11 Identities=27% Similarity=0.996 Sum_probs=6.0
Q ss_pred ccCCCCCCccC
Q psy5888 231 YACKFCGKVFP 241 (447)
Q Consensus 231 ~~C~~Cgk~F~ 241 (447)
+.|+.||+.|.
T Consensus 2 r~C~~Cg~~Yh 12 (36)
T PF05191_consen 2 RICPKCGRIYH 12 (36)
T ss_dssp EEETTTTEEEE
T ss_pred cCcCCCCCccc
Confidence 34556665553
No 164
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=29.01 E-value=10 Score=42.17 Aligned_cols=57 Identities=26% Similarity=0.673 Sum_probs=35.3
Q ss_pred CCCCCCccCChHHHHHHHHHhcCCCcc-cCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCccc
Q psy5888 233 CKFCGKVFPRSANLTRHLRTHTGEQPY-KCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCF 297 (447)
Q Consensus 233 C~~Cgk~F~~~~~L~~H~r~H~~ekp~-~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F 297 (447)
|..||-.|.-...|--- |.++.-+.| .|+.|.+.+....+-+-|.+ +..|+.||-..
T Consensus 126 CT~CGPRfTIi~alPYD-R~nTsM~~F~lC~~C~~EY~dP~nRRfHAQ-------p~aCp~CGP~~ 183 (750)
T COG0068 126 CTNCGPRFTIIEALPYD-RENTSMADFPLCPFCDKEYKDPLNRRFHAQ-------PIACPKCGPHL 183 (750)
T ss_pred cCCCCcceeeeccCCCC-cccCccccCcCCHHHHHHhcCccccccccc-------cccCcccCCCe
Confidence 88888888765544321 223332333 58888888877776544443 67888888643
No 165
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.13 E-value=17 Score=40.67 Aligned_cols=48 Identities=23% Similarity=0.535 Sum_probs=24.7
Q ss_pred ccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcc
Q psy5888 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRC 296 (447)
Q Consensus 231 ~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~ 296 (447)
..|..||..+.... =...+..|.......|.+||+. ..++.|+.||..
T Consensus 384 l~C~~Cg~~~~C~~-C~~~L~~h~~~~~l~Ch~CG~~-----------------~~p~~Cp~Cgs~ 431 (665)
T PRK14873 384 LACARCRTPARCRH-CTGPLGLPSAGGTPRCRWCGRA-----------------APDWRCPRCGSD 431 (665)
T ss_pred eEhhhCcCeeECCC-CCCceeEecCCCeeECCCCcCC-----------------CcCccCCCCcCC
Confidence 35777776544331 0111223444445666666621 125789999764
No 166
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=28.05 E-value=82 Score=21.79 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=18.2
Q ss_pred CccCCCCCCccCC--hHHHHHHHHHhc
Q psy5888 230 RYACKFCGKVFPR--SANLTRHLRTHT 254 (447)
Q Consensus 230 ~~~C~~Cgk~F~~--~~~L~~H~r~H~ 254 (447)
.-.|..||..|.. ..+-..|.+.|.
T Consensus 13 ~~~C~~CgM~Y~~~~~eD~~~H~~yH~ 39 (41)
T PF13878_consen 13 ATTCPTCGMLYSPGSPEDEKLHKKYHD 39 (41)
T ss_pred CcCCCCCCCEECCCCHHHHHHHHHHHh
Confidence 3579999988765 466777877764
No 167
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=27.81 E-value=45 Score=37.58 Aligned_cols=12 Identities=42% Similarity=0.971 Sum_probs=7.0
Q ss_pred CCCCCCcccCCc
Q psy5888 289 KCPLCDRCFGQQ 300 (447)
Q Consensus 289 ~C~~C~k~F~~~ 300 (447)
.|..|++.|...
T Consensus 462 tC~~C~kkFfSl 473 (1374)
T PTZ00303 462 SCPSCGRAFISL 473 (1374)
T ss_pred cccCcCCccccc
Confidence 366666666543
No 168
>PF15269 zf-C2H2_7: Zinc-finger
Probab=27.54 E-value=69 Score=22.86 Aligned_cols=28 Identities=7% Similarity=-0.063 Sum_probs=20.6
Q ss_pred CCCchhhhccccccccCChhHHHHHHHh
Q psy5888 344 DDSYFEEIRSFMGKVSADGNRLVQRVSS 371 (447)
Q Consensus 344 ~~~~~~~~c~~Cgk~f~~~~~L~~H~~~ 371 (447)
-.+.|...|=.|..+...+++|..||+.
T Consensus 15 ~gkp~~ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 15 PGKPFKYKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred CCCCccceeecCCcccchHHHHHHHHHH
Confidence 3455667777888888888888888873
No 169
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=27.19 E-value=25 Score=31.66 Aligned_cols=33 Identities=18% Similarity=0.469 Sum_probs=14.8
Q ss_pred CCCCCCCCcccCCchhHHHHHhhhcCCCCcccCCCCCC
Q psy5888 287 PFKCPLCDRCFGQQTNLDRHLKKHEADGPTILDDRNGG 324 (447)
Q Consensus 287 p~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~C~~C~k~ 324 (447)
+|.|. |+..|-+. ++|-..-.|+ .|.|..|+..
T Consensus 117 ~Y~C~-C~q~~l~~---RRhn~~~~g~-~YrC~~C~gk 149 (156)
T COG3091 117 PYRCQ-CQQHYLRI---RRHNTVRRGE-VYRCGKCGGK 149 (156)
T ss_pred eEEee-cCCccchh---hhcccccccc-eEEeccCCce
Confidence 45555 55544322 2333333333 5555555543
No 170
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=26.54 E-value=25 Score=35.30 Aligned_cols=76 Identities=18% Similarity=0.178 Sum_probs=39.4
Q ss_pred CCCCCCCCCcccCCchhHHHHHhhhc-------CC-------CCcccCCCCCCCCChhhhhhccCCCCCCCCCCCchhhh
Q psy5888 286 KPFKCPLCDRCFGQQTNLDRHLKKHE-------AD-------GPTILDDRNGGIPSPSMIHNRCRPPSGILNDDSYFEEI 351 (447)
Q Consensus 286 kp~~C~~C~k~F~~~~~L~~Hlr~H~-------~e-------kp~~C~~C~k~f~s~~~l~~H~~~h~~~~~~~~~~~~~ 351 (447)
-|..|+.|.-..-...+|.+-. |+ .| |.--|-.|...|.... .|..... . ....+.
T Consensus 321 LPi~CP~Csl~LilsthLarSy--hhL~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~~---~~~~~~~---~--ss~rY~ 390 (421)
T COG5151 321 LPISCPICSLQLILSTHLARSY--HHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPP---VSPFDES---T--SSGRYQ 390 (421)
T ss_pred CCccCcchhHHHHHHHHHHHHH--HhhccCcccccccCCCCCCCccceeccCCCCCCC---CCccccc---c--ccccee
Confidence 4688999876543333332211 22 11 2234777777775322 2211111 1 112235
Q ss_pred ccccccccCChhHHHHHHHh
Q psy5888 352 RSFMGKVSADGNRLVQRVSS 371 (447)
Q Consensus 352 c~~Cgk~f~~~~~L~~H~~~ 371 (447)
|..|...|-.......|...
T Consensus 391 Ce~CK~~FC~dCdvfiHe~L 410 (421)
T COG5151 391 CELCKSTFCSDCDVFIHETL 410 (421)
T ss_pred chhhhhhhhhhhHHHHHHHH
Confidence 68888888877777777543
No 171
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=26.06 E-value=69 Score=22.52 Aligned_cols=7 Identities=29% Similarity=1.084 Sum_probs=3.0
Q ss_pred ccCCCCC
Q psy5888 259 YKCKYCE 265 (447)
Q Consensus 259 ~~C~~C~ 265 (447)
+.|+.|+
T Consensus 19 ~~CP~Cg 25 (46)
T PF12760_consen 19 FVCPHCG 25 (46)
T ss_pred CCCCCCC
Confidence 3344444
No 172
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.83 E-value=25 Score=31.03 Aligned_cols=15 Identities=20% Similarity=0.607 Sum_probs=11.2
Q ss_pred CCccCCCCCCccCCh
Q psy5888 229 DRYACKFCGKVFPRS 243 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~ 243 (447)
..+.|..||..|...
T Consensus 69 ~~~~C~~CG~~~~~~ 83 (135)
T PRK03824 69 AVLKCRNCGNEWSLK 83 (135)
T ss_pred eEEECCCCCCEEecc
Confidence 458899999887653
No 173
>PF14758 NSP2_assoc: Non-essential region of nsp2 of arterivirus polyprotein
Probab=25.66 E-value=44 Score=30.70 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=9.7
Q ss_pred CCcccccccccc
Q psy5888 67 EEQPLDLRVDHK 78 (447)
Q Consensus 67 ~~~~~~~~~~~~ 78 (447)
-||||||.++-=
T Consensus 156 ldQPLnLSLaaW 167 (203)
T PF14758_consen 156 LDQPLNLSLAAW 167 (203)
T ss_pred CCCCccceeccC
Confidence 799999998643
No 174
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=25.66 E-value=29 Score=31.27 Aligned_cols=32 Identities=34% Similarity=0.829 Sum_probs=14.9
Q ss_pred CccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCC
Q psy5888 230 RYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCER 266 (447)
Q Consensus 230 ~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k 266 (447)
.|.|. |+..|.+. .+|-..-.|+ -|.|..|+.
T Consensus 117 ~Y~C~-C~q~~l~~---RRhn~~~~g~-~YrC~~C~g 148 (156)
T COG3091 117 PYRCQ-CQQHYLRI---RRHNTVRRGE-VYRCGKCGG 148 (156)
T ss_pred eEEee-cCCccchh---hhcccccccc-eEEeccCCc
Confidence 45555 55554432 2333333344 455555553
No 175
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.49 E-value=15 Score=35.39 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=17.1
Q ss_pred CCCccCCCCCCccCChHHHHHHHHHh
Q psy5888 228 KDRYACKFCGKVFPRSANLTRHLRTH 253 (447)
Q Consensus 228 ~k~~~C~~Cgk~F~~~~~L~~H~r~H 253 (447)
++.+.|++|+-.|....-+..-+|+-
T Consensus 17 kk~ieCPvC~tkFkkeev~tgsiRii 42 (267)
T COG1655 17 KKTIECPVCNTKFKKEEVKTGSIRII 42 (267)
T ss_pred hceeccCcccchhhhhheeccceeEe
Confidence 45688999988887765444444443
No 176
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=25.16 E-value=6.7 Score=40.15 Aligned_cols=53 Identities=21% Similarity=0.190 Sum_probs=0.0
Q ss_pred CCCCCCCcccCCchhH---HHH-HhhhcCCCC-cccCCCCCCCCChhhhhhccCCCCCCCCCCCchhhhccccc
Q psy5888 288 FKCPLCDRCFGQQTNL---DRH-LKKHEADGP-TILDDRNGGIPSPSMIHNRCRPPSGILNDDSYFEEIRSFMG 356 (447)
Q Consensus 288 ~~C~~C~k~F~~~~~L---~~H-lr~H~~ekp-~~C~~C~k~f~s~~~l~~H~~~h~~~~~~~~~~~~~c~~Cg 356 (447)
|.|..|.+.+...... ..| +.+|.+.|- |.|..|++...+-..|-.+ .|..||
T Consensus 253 v~C~~C~yt~~~~~~~C~~~~H~l~~~~a~KRFFkC~~C~~Rt~sl~r~P~~----------------~C~~Cg 310 (344)
T PF09332_consen 253 VTCKQCKYTAFKPSDRCKEEGHPLKWHDAVKRFFKCKDCGNRTISLERLPKK----------------HCSNCG 310 (344)
T ss_dssp EEETTT--EESS--HHHHHTT--EEEEEEE-EEEE-T-TS-EEEESSSS--S------------------TTT-
T ss_pred EEcCCCCCcccCcchhHHhcCCceEEeeeeeeeEECCCCCCeeeecccCCCC----------------CCCcCC
No 177
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=25.03 E-value=82 Score=35.22 Aligned_cols=51 Identities=16% Similarity=0.302 Sum_probs=0.0
Q ss_pred cCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHHhhhc
Q psy5888 232 ACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHE 311 (447)
Q Consensus 232 ~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~H~ 311 (447)
.|+.||.. ....--.|+.||..+. .-.|+.||.. .
T Consensus 3 ~Cp~Cg~~--------------n~~~akFC~~CG~~l~-----------------~~~Cp~CG~~--------------~ 37 (645)
T PRK14559 3 ICPQCQFE--------------NPNNNRFCQKCGTSLT-----------------HKPCPQCGTE--------------V 37 (645)
T ss_pred cCCCCCCc--------------CCCCCccccccCCCCC-----------------CCcCCCCCCC--------------C
Q ss_pred CCCCcccCCCCCCCCC
Q psy5888 312 ADGPTILDDRNGGIPS 327 (447)
Q Consensus 312 ~ekp~~C~~C~k~f~s 327 (447)
....-.|..||.....
T Consensus 38 ~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 38 PVDEAHCPNCGAETGT 53 (645)
T ss_pred CcccccccccCCcccc
No 178
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=24.55 E-value=55 Score=29.14 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=26.6
Q ss_pred cccCCCCCCCCChhhhhhccCCCCCCC-CCCCchhhhccccccccCChhHHHHHH
Q psy5888 316 TILDDRNGGIPSPSMIHNRCRPPSGIL-NDDSYFEEIRSFMGKVSADGNRLVQRV 369 (447)
Q Consensus 316 ~~C~~C~k~f~s~~~l~~H~~~h~~~~-~~~~~~~~~c~~Cgk~f~~~~~L~~H~ 369 (447)
-.|..|+..+.....-.........+. ..+.++ .|..||++|-...++.+-.
T Consensus 92 sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~--~C~~C~kiyW~GsH~~~~~ 144 (147)
T PF01927_consen 92 SRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFW--RCPGCGKIYWEGSHWRRME 144 (147)
T ss_pred CccCCCCcEeeechhhccccccCccccccCCeEE--ECCCCCCEecccccHHHHH
Confidence 468888876543221111111111111 222333 5699999998887766543
No 179
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.33 E-value=25 Score=39.26 Aligned_cols=83 Identities=23% Similarity=0.440 Sum_probs=52.8
Q ss_pred CCCccCCCCCCccCChHHHHHHHHHhcCCCcc-cCCCCCCcccchhhHHHHhhhhccCCCCC-CCCCCCcccCCchhHHH
Q psy5888 228 KDRYACKFCGKVFPRSANLTRHLRTHTGEQPY-KCKYCERSFSISSNLQRHVRNIHNKEKPF-KCPLCDRCFGQQTNLDR 305 (447)
Q Consensus 228 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~-~C~~C~k~F~s~~~L~~H~~~~H~~~kp~-~C~~C~k~F~~~~~L~~ 305 (447)
.+.-.|+.|-+.+..+.+ .|.+ -|| .|..||-+|.-...|-.- | -++.-+.| -|+.|.+.|....+-+-
T Consensus 99 pD~a~C~~Cl~Ei~dp~~----rrY~---YPF~~CT~CGPRfTIi~alPYD-R-~nTsM~~F~lC~~C~~EY~dP~nRRf 169 (750)
T COG0068 99 PDAATCEDCLEEIFDPNS----RRYL---YPFINCTNCGPRFTIIEALPYD-R-ENTSMADFPLCPFCDKEYKDPLNRRF 169 (750)
T ss_pred CchhhhHHHHHHhcCCCC----ccee---ccccccCCCCcceeeeccCCCC-c-ccCccccCcCCHHHHHHhcCcccccc
Confidence 345678888765554433 1111 133 599999999987766443 2 34444445 49999998887766333
Q ss_pred HHhhhcCCCCcccCCCCCCC
Q psy5888 306 HLKKHEADGPTILDDRNGGI 325 (447)
Q Consensus 306 Hlr~H~~ekp~~C~~C~k~f 325 (447)
| . .+..|+.||-.+
T Consensus 170 H----A--Qp~aCp~CGP~~ 183 (750)
T COG0068 170 H----A--QPIACPKCGPHL 183 (750)
T ss_pred c----c--ccccCcccCCCe
Confidence 3 2 467899999653
No 180
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=22.77 E-value=38 Score=28.94 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=17.7
Q ss_pred CCccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCC
Q psy5888 229 DRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCER 266 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k 266 (447)
-.+.|..||..|.... ..|.|+.|+.
T Consensus 69 ~~~~C~~Cg~~~~~~~------------~~~~CP~Cgs 94 (113)
T PRK12380 69 AQAWCWDCSQVVEIHQ------------HDAQCPHCHG 94 (113)
T ss_pred cEEEcccCCCEEecCC------------cCccCcCCCC
Confidence 4588999997775422 3356888884
No 181
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=22.32 E-value=36 Score=29.12 Aligned_cols=27 Identities=19% Similarity=0.540 Sum_probs=18.5
Q ss_pred CCccCCCCCCccCChHHHHHHHHHhcCCCcccCCCCCCc
Q psy5888 229 DRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERS 267 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~C~k~ 267 (447)
-.+.|..||..|..... -+.|+.|+..
T Consensus 69 ~~~~C~~Cg~~~~~~~~------------~~~CP~Cgs~ 95 (115)
T TIGR00100 69 VECECEDCSEEVSPEID------------LYRCPKCHGI 95 (115)
T ss_pred cEEEcccCCCEEecCCc------------CccCcCCcCC
Confidence 35789999988764321 3678888854
No 182
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=21.97 E-value=25 Score=31.63 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=5.9
Q ss_pred cCCCCCCcccch
Q psy5888 260 KCKYCERSFSIS 271 (447)
Q Consensus 260 ~C~~C~k~F~s~ 271 (447)
.|..|+++|.+.
T Consensus 30 eC~~C~~RFTTf 41 (156)
T COG1327 30 ECLECGERFTTF 41 (156)
T ss_pred cccccccccchh
Confidence 355555555443
No 183
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=21.57 E-value=41 Score=32.78 Aligned_cols=71 Identities=11% Similarity=0.222 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhcCC-----CcccCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCcccCCchhHHHHHhhhcCCCCcc
Q psy5888 243 SANLTRHLRTHTGE-----QPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGPTI 317 (447)
Q Consensus 243 ~~~L~~H~r~H~~e-----kp~~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F~~~~~L~~Hlr~H~~ekp~~ 317 (447)
..+|..+-+.+.+. +.|.|..|.....+ + +-.....-+|..|.+.|.---. ..--|-.-|.
T Consensus 92 e~Nlrm~d~a~~~~ip~~drqFaC~~Cd~~WwR--------r-vp~rKeVSRCr~C~~rYDPVP~-----dkmwG~aef~ 157 (278)
T PF15135_consen 92 EENLRMFDDAQENLIPSVDRQFACSSCDHMWWR--------R-VPQRKEVSRCRKCRKRYDPVPC-----DKMWGIAEFH 157 (278)
T ss_pred HHHHHHhhhhhhccccccceeeeccccchHHHh--------c-cCcccccccccccccccCCCcc-----ccccceeeee
Confidence 34555555544433 56777777532111 1 2222333567777776643210 0111334577
Q ss_pred cCCCCCCCCC
Q psy5888 318 LDDRNGGIPS 327 (447)
Q Consensus 318 C~~C~k~f~s 327 (447)
|..|+..|..
T Consensus 158 C~~C~h~F~G 167 (278)
T PF15135_consen 158 CPKCRHNFRG 167 (278)
T ss_pred cccccccchh
Confidence 7778877754
No 184
>KOG1701|consensus
Probab=21.55 E-value=25 Score=36.76 Aligned_cols=15 Identities=13% Similarity=0.658 Sum_probs=10.0
Q ss_pred CCccCCCCCCccCCh
Q psy5888 229 DRYACKFCGKVFPRS 243 (447)
Q Consensus 229 k~~~C~~Cgk~F~~~ 243 (447)
.-|+|..|++...-.
T Consensus 301 ~CFtC~~C~r~L~Gq 315 (468)
T KOG1701|consen 301 QCFTCRTCRRQLAGQ 315 (468)
T ss_pred cceehHhhhhhhccc
Confidence 458898887654433
No 185
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=21.51 E-value=43 Score=27.56 Aligned_cols=12 Identities=17% Similarity=0.695 Sum_probs=7.4
Q ss_pred CCCCCCCCcccC
Q psy5888 287 PFKCPLCDRCFG 298 (447)
Q Consensus 287 p~~C~~C~k~F~ 298 (447)
.|.|..|++.|.
T Consensus 54 IW~C~~C~~~~A 65 (90)
T PTZ00255 54 IWRCKGCKKTVA 65 (90)
T ss_pred EEEcCCCCCEEe
Confidence 366666666654
No 186
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=21.29 E-value=46 Score=20.09 Aligned_cols=6 Identities=33% Similarity=1.110 Sum_probs=2.9
Q ss_pred CCCCCC
Q psy5888 261 CKYCER 266 (447)
Q Consensus 261 C~~C~k 266 (447)
|+.||.
T Consensus 16 C~~CG~ 21 (23)
T PF13240_consen 16 CPNCGT 21 (23)
T ss_pred hhhhCC
Confidence 444543
No 187
>KOG3408|consensus
Probab=20.54 E-value=47 Score=28.84 Aligned_cols=22 Identities=27% Similarity=0.609 Sum_probs=15.2
Q ss_pred cccCCCCCCcccchhhHHHHhh
Q psy5888 258 PYKCKYCERSFSISSNLQRHVR 279 (447)
Q Consensus 258 p~~C~~C~k~F~s~~~L~~H~~ 279 (447)
.|.|-.|.+.|.....|+.|.+
T Consensus 57 qfyCi~CaRyFi~~~~l~~H~k 78 (129)
T KOG3408|consen 57 QFYCIECARYFIDAKALKTHFK 78 (129)
T ss_pred eeehhhhhhhhcchHHHHHHHh
Confidence 4667777777777777777765
No 188
>KOG2807|consensus
Probab=20.39 E-value=1.2e+02 Score=30.73 Aligned_cols=73 Identities=18% Similarity=0.369 Sum_probs=46.1
Q ss_pred CccCCCCCCccCChHHHHHHHHHhcCCCcc------------cCCCCCCcccchhhHHHHhhhhccCCCCCCCCCCCccc
Q psy5888 230 RYACKFCGKVFPRSANLTRHLRTHTGEQPY------------KCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCF 297 (447)
Q Consensus 230 ~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~------------~C~~C~k~F~s~~~L~~H~~~~H~~~kp~~C~~C~k~F 297 (447)
+-.|++|+-+....-+|.+-.+.--.-++| .|-.|+ . .-.+...|+|..|...|
T Consensus 290 P~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~------~--------~~~~~~~y~C~~Ck~~F 355 (378)
T KOG2807|consen 290 PIECPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQ------G--------ELLSSGRYRCESCKNVF 355 (378)
T ss_pred CccCCccceeEecchHHHHHHHhhcCCcchhhccccccCCCcceeeec------c--------ccCCCCcEEchhcccee
Confidence 467999999888877776643211111111 144441 1 11223359999999999
Q ss_pred CCchhHHHHHhhhcCCCCcccCCCC
Q psy5888 298 GQQTNLDRHLKKHEADGPTILDDRN 322 (447)
Q Consensus 298 ~~~~~L~~Hlr~H~~ekp~~C~~C~ 322 (447)
-...+.-.|-..|. |..|.
T Consensus 356 CldCDv~iHesLh~------CpgCe 374 (378)
T KOG2807|consen 356 CLDCDVFIHESLHN------CPGCE 374 (378)
T ss_pred eccchHHHHhhhhc------CCCcC
Confidence 98888888877664 66675
No 189
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=20.26 E-value=41 Score=27.75 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=7.3
Q ss_pred CCCCCCCCcccC
Q psy5888 287 PFKCPLCDRCFG 298 (447)
Q Consensus 287 p~~C~~C~k~F~ 298 (447)
.|.|..|++.|.
T Consensus 53 IW~C~~C~~~~A 64 (91)
T TIGR00280 53 IWTCRKCGAKFA 64 (91)
T ss_pred EEEcCCCCCEEe
Confidence 366666666654
No 190
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.22 E-value=22 Score=34.20 Aligned_cols=16 Identities=19% Similarity=0.617 Sum_probs=8.8
Q ss_pred CcccCCCCCCcccchh
Q psy5888 257 QPYKCKYCERSFSISS 272 (447)
Q Consensus 257 kp~~C~~C~k~F~s~~ 272 (447)
+.+.|++|+-.|....
T Consensus 18 k~ieCPvC~tkFkkee 33 (267)
T COG1655 18 KTIECPVCNTKFKKEE 33 (267)
T ss_pred ceeccCcccchhhhhh
Confidence 3456666666655443
No 191
>KOG3408|consensus
Probab=20.12 E-value=48 Score=28.74 Aligned_cols=23 Identities=26% Similarity=0.654 Sum_probs=21.2
Q ss_pred CccCCCCCCccCChHHHHHHHHH
Q psy5888 230 RYACKFCGKVFPRSANLTRHLRT 252 (447)
Q Consensus 230 ~~~C~~Cgk~F~~~~~L~~H~r~ 252 (447)
-|.|-.|.+.|.+...|..|.++
T Consensus 57 qfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 57 QFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred eeehhhhhhhhcchHHHHHHHhc
Confidence 48999999999999999999884
No 192
>KOG3002|consensus
Probab=20.02 E-value=1.3e+02 Score=30.26 Aligned_cols=76 Identities=24% Similarity=0.505 Sum_probs=49.7
Q ss_pred CCCccCCCCCCccCChHHHHHHHHHhcCCCcccCCC----CCCcccchhhHHHHhhhhccCCCCCCCCC----CCcccCC
Q psy5888 228 KDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKY----CERSFSISSNLQRHVRNIHNKEKPFKCPL----CDRCFGQ 299 (447)
Q Consensus 228 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~ekp~~C~~----C~k~F~s~~~L~~H~~~~H~~~kp~~C~~----C~k~F~~ 299 (447)
+...+|+.|...+..... ++|..-.....+.|+. |.+.|..... ..|.+ .... ++|.|+. |... ..
T Consensus 78 ~~~~~CP~Cr~~~g~~R~--~amEkV~e~~~vpC~~~~~GC~~~~~Y~~~-~~HE~-~C~f-~~~~CP~p~~~C~~~-G~ 151 (299)
T KOG3002|consen 78 KVSNKCPTCRLPIGNIRC--RAMEKVAEAVLVPCKNAKLGCTKSFPYGEK-SKHEK-VCEF-RPCSCPVPGAECKYT-GS 151 (299)
T ss_pred hhcccCCccccccccHHH--HHHHHHHHhceecccccccCCceeeccccc-ccccc-cccc-CCcCCCCCcccCCcc-Cc
Confidence 355789999988885543 3444333445677876 8899888776 56766 4444 6788875 5433 34
Q ss_pred chhHHHHHhh
Q psy5888 300 QTNLDRHLKK 309 (447)
Q Consensus 300 ~~~L~~Hlr~ 309 (447)
...|..|.+.
T Consensus 152 ~~~l~~H~~~ 161 (299)
T KOG3002|consen 152 YKDLYAHLND 161 (299)
T ss_pred HHHHHHHHHh
Confidence 4567788765
Done!