RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5888
(447 letters)
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 120 bits (304), Expect = 1e-33
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
P + C+ CGK F R L H+R HTG +PYKCK C+ + + SS+L +H+R IH
Sbjct: 4 GSSGP---HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IH 59
Query: 283 NKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ E+PFKC +C + L HL+ H
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 101 bits (255), Expect = 1e-26
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
TG KP Y CK C S++L +HLR H+ E+P+KC+ C + SS L H+R H
Sbjct: 32 TGVKP---YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR-SH 87
Query: 283 NKEKPFKC 290
+
Sbjct: 88 TGDSGPSS 95
Score = 85.6 bits (213), Expect = 1e-20
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 252 THTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ P+KC+ C + FS L+ H+R H KP+KC CD ++L++HL+ H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 117 bits (295), Expect = 2e-32
Identities = 38/87 (43%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 226 KPKDRYACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 283
+P YAC C + F +S +LTRH+R HTG++P++C+ C R+FS S +L H+R H
Sbjct: 3 RP---YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THT 58
Query: 284 KEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKPF C +C R F + RH K H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 92.5 bits (231), Expect = 3e-23
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 11/80 (13%)
Query: 214 KQFQESISNN------TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCER 266
++F +S S TG KP + C+ C + F RS +LT H+RTHTGE+P+ C C R
Sbjct: 14 RRFSQSGSLTRHIRIHTGQKP---FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 267 SFSISSNLQRHVRNIHNKEK 286
F+ S +RH + IH ++K
Sbjct: 71 KFARSDERKRHTK-IHLRQK 89
Score = 71.7 bits (177), Expect = 6e-16
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 256 EQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
E+PY C C+R FS S +L RH+R IH +KPF+C +C R F + +L H++ H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 116 bits (294), Expect = 3e-32
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 226 KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 285
KP + C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH I +
Sbjct: 2 KP---FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD-IQH-I 56
Query: 286 KPFKCPLCDRCFGQQTNLDRH 306
P + + +L+
Sbjct: 57 LPILEDKVEELLSKNYHLENE 77
Score = 80.2 bits (199), Expect = 6e-19
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN-- 280
TG KP +AC CG+ F RS RH P E S + +L+ V
Sbjct: 27 TGEKP---FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLK 82
Query: 281 IHNKEK 286
E+
Sbjct: 83 KLVGER 88
Score = 74.8 bits (185), Expect = 5e-17
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 258 PYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
P++C+ C R+FS S +L H+R H EKPF C +C R F + RH
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 35.2 bits (82), Expect = 0.004
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKH 310
KPF+C +C R F + +L H++ H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 115 bits (291), Expect = 8e-32
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 230 RYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKP 287
CGK + +S++L HLRTHTGE+PY C + C F+ S L RH R H +P
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRP 65
Query: 288 FKCPLCDRCFGQQTNLDRHLKKH 310
F+C CDR F + +L H+K+H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 83.0 bits (206), Expect = 7e-20
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 7/62 (11%)
Query: 224 TG-KPKDRYACK--FCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 280
TG KP Y C CG F RS LTRH R HTG +P++C+ C+R+FS S +L H++
Sbjct: 31 TGEKP---YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK- 86
Query: 281 IH 282
H
Sbjct: 87 RH 88
Score = 69.9 bits (172), Expect = 3e-15
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 253 HTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC--PLCDRCFGQQTNLDRHLKKH 310
T C ++++ SS+L+ H+R H EKP+ C C F + L RH +KH
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 114 bits (287), Expect = 3e-31
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ CK CGK F RS+ L+ HL H+ +PY C+YC + F S++++H IH EKP KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKC 60
Query: 291 PLCDRCFGQQTNLDRHLKKH 310
+C + F Q +NL H +KH
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 48.2 bits (116), Expect = 1e-07
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTG 255
TG KP + C+ CGK F +S+NL H R HTG
Sbjct: 53 TGEKP---HKCQVCGKAFSQSSNLITHSRKHTG 82
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 114 bits (289), Expect = 3e-31
Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
K + CKFCG+ F +S NL H RTHT E+PY C C ++F +L+ H IH
Sbjct: 13 KTKKE---FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IH 68
Query: 283 NKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+KEKPFKC C + F Q L H H
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 99.8 bits (250), Expect = 1e-25
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
T +P Y C C K F R +L H H+ E+P+KC+ C + F S L H +H
Sbjct: 41 TDERP---YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT-LH 96
Query: 283 NKEKPFKC 290
+
Sbjct: 97 MQTSSPTA 104
Score = 92.9 bits (232), Expect = 3e-23
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 243 SANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTN 302
S+ + ++ + CK+C R F+ S NL H R H E+P+ C +C + F +Q +
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDH 60
Query: 303 LDRHLKKH 310
L H H
Sbjct: 61 LRDHRYIH 68
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 113 bits (285), Expect = 6e-31
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
+G AC+ CGK+F +L RH +H+GE+PY C C F + HVR H
Sbjct: 3 SGSSG---VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SH 58
Query: 283 NKE--KPFKCPLCDRCFGQQTNLDRHLKK 309
+ KP+ C C + F + +L+ H+K+
Sbjct: 59 DGSVGKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 89.9 bits (224), Expect = 3e-22
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQ--PYKCKYCERSFSISSNLQRHVRN 280
+G KP Y+C CG F R ++ H+R+H G PY C+ C + FS +L H++
Sbjct: 31 SGEKP---YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQ 87
Query: 281 IHNKEK 286
+H+
Sbjct: 88 VHSGPS 93
Score = 81.4 bits (202), Expect = 3e-19
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 253 HTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+G C+ C + F +L RH H+ EKP+ CP+C F ++ + H++ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 114 bits (288), Expect = 7e-31
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN-- 280
+G C C K F L H R HTGE+P++C C + + NL H
Sbjct: 3 SGSSG---VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC 59
Query: 281 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
++ E+ F C +C F ++ L H+ H
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 108 bits (272), Expect = 1e-28
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLR---THTGEQPYKCKYCERSFSISSNLQRHVR 279
TG KP + C CGK + R NL H + EQ + C C+ +F L+ H+
Sbjct: 31 TGEKP---FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV 87
Query: 280 NIHNKEKPFKCPLCDRCFGQQTNLDRH 306
H E P+KC C + F Q+ +L H
Sbjct: 88 -SHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 88.3 bits (220), Expect = 2e-21
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
+ + C C + F R L H+ +HTGE PYKC C + F +LQ H+ +H
Sbjct: 62 RSEQV---FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Query: 283 NKEK 286
+
Sbjct: 119 SGPS 122
Score = 81.4 bits (202), Expect = 7e-19
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 253 HTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRH 306
+G +C C + F L+ H R H EKPF+CP C +C+ ++ NL H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 39.4 bits (93), Expect = 3e-04
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 282 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ +CP C + F + L H +KH
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKH 30
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 113 bits (284), Expect = 1e-30
Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 5/95 (5%)
Query: 221 SNNTGKPKDRYACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQR 276
S + + + C + C KV+ +S++L HLRTHTGE+PYKC + C+ F+ S L R
Sbjct: 6 SGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTR 65
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHE 311
H R H KPF+C +C+R F + +L H+K+H+
Sbjct: 66 HYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 73.4 bits (181), Expect = 2e-16
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 240 FPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC--PLCDRCF 297
S R H + P C + ++ SS+L+ H+R H EKP+KC CD F
Sbjct: 3 SGSSGPDLEKRRIHYCDYP----GCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRF 57
Query: 298 GQQTNLDRHLKKH 310
+ L RH +KH
Sbjct: 58 ARSDELTRHYRKH 70
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 113 bits (285), Expect = 1e-30
Identities = 41/92 (44%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 224 TG-KPKDRYACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 280
TG KP Y C F C + F RS L RH R HTG +P++CK C+R FS S +L+ H R
Sbjct: 32 TGEKP---YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR- 87
Query: 281 IHNKEKPFKCPL--CDRCFGQQTNLDRHLKKH 310
H EKPF C C + F + L RH H
Sbjct: 88 THTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 112 bits (284), Expect = 2e-30
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 224 TG-KPKDRYACK--FCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHV 278
+ +P + C C K + + ++L H R HTGE+PY+C + CER FS S L+RH
Sbjct: 2 SEKRP---FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ 58
Query: 279 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
R H KPF+C C R F + +L H + H
Sbjct: 59 R-RHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 114 bits (288), Expect = 3e-30
Identities = 46/88 (52%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
G KP YAC CGK F RS +L H RTHTGE+PYKC C +SFS +L RH R H
Sbjct: 17 PGEKP---YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-TH 72
Query: 283 NKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KCP C + F Q+ NL H + H
Sbjct: 73 TGEKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 114 bits (287), Expect = 5e-30
Identities = 43/88 (48%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
TG KP Y C CGK F + ANL H RTHTGE+PY C C +SFS ++L+ H R H
Sbjct: 73 TGEKP---YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-TH 128
Query: 283 NKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KCP C + F ++ NL H + H
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 112 bits (282), Expect = 3e-29
Identities = 44/88 (50%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
TG KP YAC CGK F + A+L H RTHTGE+PYKC C +SFS NL H R H
Sbjct: 101 TGEKP---YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-TH 156
Query: 283 NKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KCP C + F ++ L+ H + H
Sbjct: 157 TGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 97.1 bits (243), Expect = 7e-24
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 240 FPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQ 299
S++ GE+PY C C +SFS S +L H R H EKP+KCP C + F
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSD 61
Query: 300 QTNLDRHLKKH 310
+ +L RH + H
Sbjct: 62 KKDLTRHQRTH 72
Score = 52.1 bits (126), Expect = 5e-08
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQP 258
TG KP Y C CGK F R L H RTHTG++
Sbjct: 157 TGEKP---YKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 51.7 bits (125), Expect = 5e-08
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 267 SFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
S SS+ + EKP+ CP C + F + +L H + H
Sbjct: 2 SEFGSSSSVAQAA-LEPGEKPYACPECGKSFSRSDHLAEHQRTH 44
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 111 bits (280), Expect = 8e-30
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 226 KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHN 283
+ + C CGK F S+ L RH HTGE+P++C + C + FS+ NL+ HVR IH
Sbjct: 33 RV---HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHT 88
Query: 284 KEKPFKCPL--CDRCFGQQTNLDRHLKKH 310
++P+ CP C++ F Q TNL H+ H
Sbjct: 89 GDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 101 bits (253), Expect = 6e-26
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 226 KPKDRYACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 283
+ AC C K+F ++ + +HL TH G + + C C ++F SS L+RH +H
Sbjct: 4 RT---IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL-VHT 58
Query: 284 KEKPFKCPL--CDRCFGQQTNLDRHLKKH 310
EKPF+C C + F NL H++ H
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 91.4 bits (228), Expect = 2e-22
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 224 TG-KPKDRYACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHV 278
TG KP + C F CGK F NL H+R HTG++PY C + C + F+ S+NL+ H+
Sbjct: 58 TGEKP---FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Query: 279 RNIHNKEKPFK 289
H K K +
Sbjct: 115 L-THAKAKNNQ 124
Score = 62.9 bits (154), Expect = 2e-12
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 256 EQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ C + C + F +S +++H+ H + C C + F + + L RH H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLH-THG-PRVHVCAECGKAFVESSKLKRHQLVH 57
Score = 33.3 bits (77), Expect = 0.044
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 284 KEKPFKCPL--CDRCFGQQTNLDRHLKKH 310
+ + CP C + F + + +HL H
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH 30
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 108 bits (273), Expect = 3e-29
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 231 YACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 286
Y C F CGK F + L H +HT + PY+C + C++ FS+ S L+RH + +H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 60
Query: 287 PFKCPLCDRCFGQQTNLDRHLKK 309
K C T +H+ +
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAE 83
Score = 78.8 bits (195), Expect = 2e-18
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 224 TG-KPKDRYACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 280
T P Y C C K F + L RH + H G K C + +HV
Sbjct: 27 TQQLP---YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83
Query: 281 IH 282
H
Sbjct: 84 CH 85
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 110 bits (278), Expect = 3e-29
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 10/94 (10%)
Query: 224 TG-KPKDRYACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHV 278
TG KP + C F C K + R NL HLR+HTGE+PY C++ C ++FS +S+ +H
Sbjct: 63 TGEKP---HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQ 119
Query: 279 RNIHNKEKPFKC--PLCDRCFGQQTNLDRHLKKH 310
H+ EKP+ C P C + + ++L +H+K
Sbjct: 120 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 99 bits (250), Expect = 4e-25
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 224 TG-KPKDRYACKFCG-----KVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQ 275
K + C + G + F L H+R HTGE+P+KC + C +S+S NL+
Sbjct: 30 GERKE---FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLK 86
Query: 276 RHVRNIHNKEKPFKC--PLCDRCFGQQTNLDRH 306
H+R H EKP+ C C + F ++ +H
Sbjct: 87 THLR-SHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 98.8 bits (247), Expect = 9e-25
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 14/95 (14%)
Query: 226 KPKDRYACKFCGKVFPRSANLTRHL---RTHTGEQPYKCKYCE-----RSFSISSNLQRH 277
C + F L H+ H + + C + R F L H
Sbjct: 2 TD---CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Query: 278 VRNIHNKEKPFKCPL--CDRCFGQQTNLDRHLKKH 310
+R H EKP KC C + + + NL HL+ H
Sbjct: 59 MR-RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 64.2 bits (157), Expect = 2e-12
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 256 EQPYKCKYCERSFSISSNLQRHVRN--IHNKEKPFKCPLCD-----RCFGQQTNLDRHLK 308
E + C + F L H+ + IH + K F C R F Q L H++
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 309 KH 310
+H
Sbjct: 61 RH 62
Score = 43.7 bits (104), Expect = 2e-05
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 224 TG-KPKDRYACKF--CGKVFPRSANLTRHLRTHTG 255
+ KP Y CK C K + ++L +H++T G
Sbjct: 124 SNEKP---YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 111 bits (281), Expect = 4e-29
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 224 TG-KPKDRYACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHV 278
K Y C F CG + ++ L HL HTGE+P+ CK CE+ F+ +L RH
Sbjct: 8 VVYKR---YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS 64
Query: 279 RNIHNKEKPFKC--PLCDRCFGQQTNLDRHLKKH 310
H EK F C CD F + N+ +H +
Sbjct: 65 L-THTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 101 bits (254), Expect = 2e-25
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
Query: 224 TG-KPKDRYACK--FCGKVFPRSANLTRHLRTHTGEQ--PYKCKY--CERSFSISSNLQR 276
TG K + C C F AN+ +H + Y C + C ++F + L+
Sbjct: 68 TGEKN---FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKV 124
Query: 277 HVRNIHNKEKPFKC--PLCDRCFGQQTNLDRHLKKH 310
H H ++ P++C CD+ F + L RH K H
Sbjct: 125 HQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 98.8 bits (247), Expect = 2e-24
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 224 TGKPKDRYACKF--CGKVFPRSANLTRHLRTHTGEQPYKCK--YCERSFSISSNLQRHVR 279
Y C F CGK F + L H +HT + PY+C C++ FS+ S L+RH +
Sbjct: 98 HNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 157
Query: 280 NIHNKEKPFKCPLCDRCFGQQTNLDRHLKK 309
+H K C T +H+ +
Sbjct: 158 -VHAGYPCKKDDSCSFVGKTWTLYLKHVAE 186
Score = 82.6 bits (205), Expect = 1e-18
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 249 HLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKC--PLCDRCFGQQTNLD 304
+ Y C + C +++ + LQ H+ H EKPF C C++ F +L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 305 RHLKKH 310
RH H
Sbjct: 62 RHSLTH 67
Score = 75.7 bits (187), Expect = 3e-16
Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 224 TG-KPKDRYACK--FCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 280
T P Y C C K F + L RH + H G K C + +HV
Sbjct: 130 TQQLP---YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 186
Query: 281 IHN 283
H
Sbjct: 187 CHQ 189
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 106 bits (266), Expect = 1e-28
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 251 RTHTGEQPYKCKYCERSFSISSNLQRHVRNI-HNKEKPFKCPLCDRCFGQQTNLDRHLKK 309
T GE Y+CK C R ++ SN RH K + CP C + F ++ N+ H+K
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 310 H 310
Sbjct: 63 I 63
Score = 86.8 bits (216), Expect = 2e-21
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRT--HTGEQPYKCKYCERSFSISSNLQRHVRN 280
G Y CK C +V+ +N RH T + Y C +C + F+ N+ HV+
Sbjct: 6 EGEHT---YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK- 61
Query: 281 IHNK 284
I +K
Sbjct: 62 IIHK 65
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 104 bits (263), Expect = 5e-28
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 245 NLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE--KPFKCPLCDRCFGQQTN 302
+ RTH+GE+PY+C C F+ S ++ H+ + E F CP CD ++++
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKSD 60
Query: 303 LDRHLKKH 310
L HL+K
Sbjct: 61 LGVHLRKQ 68
Score = 94.5 bits (236), Expect = 3e-24
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQ--PYKCKYCERSFSISSNLQRHVRN 280
+G KP Y C C F +S + H+ E + C +C+ + S+L H+R
Sbjct: 11 SGEKP---YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 281 IHNKEKPF 288
H+ P
Sbjct: 68 QHSYSGPS 75
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 103 bits (259), Expect = 5e-27
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
+G K Y C+ CGK F + RH+ H G +PY C C + F + +L H++ IH
Sbjct: 6 SGDKL---YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IH 60
Query: 283 NKEKPFKCPLCDRCFGQQTNLDRH 306
KP++C +C + F + + RH
Sbjct: 61 TGIKPYECNICAKRFMWRDSFHRH 84
Score = 102 bits (256), Expect = 1e-26
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
G +P Y C CGK F +L H++ HTG +PY+C C + F + RH +
Sbjct: 33 LGLRP---YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH---VT 86
Query: 283 NKEKPFKCPLCDRCFGQQTNL 303
+ K ++ ++ + +
Sbjct: 87 SCTKSYEAAKAEQNTTEASGP 107
Score = 78.3 bits (194), Expect = 5e-18
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 251 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+G++ Y C+ C +SF+ S RH+ +H +P+ C +C + F + +L H+K H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 30.1 bits (69), Expect = 0.40
Identities = 2/25 (8%), Positives = 7/25 (28%), Gaps = 4/25 (16%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLT 247
+ K Y + ++ +
Sbjct: 87 SCTKS---YEAAKAEQNTTEASGPS 108
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 101 bits (253), Expect = 1e-26
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 224 TG-KPKDRYACKF--CGKVFPRSANLTRHLR-THTGEQPYKCKY--CERSFSISSNLQRH 277
+G C F CG++F L H + H ++ + C C +SF+ +L+ H
Sbjct: 3 SGSSG---MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH 59
Query: 278 VRNIHNKEKPFKCPLCDRCFG 298
++ +H+ + + C G
Sbjct: 60 MK-LHSDTRDYICEFSGPSSG 79
Score = 83.0 bits (206), Expect = 6e-20
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 253 HTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCP--LCDRCFGQQTNLDRHLK 308
+G C + C R FS L H + H +K F CP C + F + +L H+K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 309 KH 310
H
Sbjct: 62 LH 63
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 101 bits (255), Expect = 5e-26
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 233 CKFCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKC 290
C GK F L H+R HTGE+P+ C + C + F+ S NL+ H R H EKPFKC
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR-THTGEKPFKC 123
Query: 291 PL--CDRCFGQQTNLDRHLKKH 310
CDR F ++ +H+ H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 101 bits (254), Expect = 8e-26
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYK---------CKYCERSFSISSNLQRHVRNI 281
K C + F L H+ P + C +SF L H+R +
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-V 84
Query: 282 HNKEKPFKCPL--CDRCFGQQTNLDRHLKKH 310
H EKPF CP C + F + NL H + H
Sbjct: 85 HTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 95.8 bits (239), Expect = 1e-23
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 9/72 (12%)
Query: 224 TG-KPKDRYACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHV 278
TG KP + C F CGK+F RS NL H RTHTGE+P+KC++ C+R F+ SS+ ++H+
Sbjct: 86 TGEKP---FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Query: 279 RNIHNKEKPFKC 290
+H +K
Sbjct: 143 H-VHTSDKSGPS 153
Score = 80.8 bits (200), Expect = 2e-18
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 236 CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFK------ 289
G + K C+R+FS L HV + + P +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHVCY 61
Query: 290 ---CPLCDRCFGQQTNLDRHLKKH 310
CP + F + L H++ H
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVH 85
Score = 46.1 bits (110), Expect = 3e-06
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 266 RSFSISSNLQRHVRN--IHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGP 315
S S +++ + I + CDR F L H+ GP
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGP 53
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 99.1 bits (248), Expect = 8e-26
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQ----PYKCKYCERSFSISSNLQRHV 278
TG KP YAC C K F + L H + + + C C ++F+ + + RH
Sbjct: 11 TGEKP---YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 279 RNIHNKEKPFKCPLCDRCFG 298
+ G
Sbjct: 68 D-NCAGPDGVEGENSGPSSG 86
Score = 87.6 bits (218), Expect = 2e-21
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 245 NLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH----NKEKPFKCPLCDRCFGQQ 300
+ RTHTGE+PY C +C+++F L H + + F C C + F ++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 301 TNLDRHLKKH 310
+ RH
Sbjct: 61 NTMARHADNC 70
Score = 68.7 bits (169), Expect = 7e-15
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 222 NNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSF 268
N + C CGK F R + RH G + + S
Sbjct: 42 NFVPAA---FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 94.9 bits (237), Expect = 2e-24
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 251 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ + P KC C S S + L+ H R IH ++PFKC C Q +NL +H+KK
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 91.0 bits (227), Expect = 5e-23
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
+ P C C A L H R H ++P+KC YC SNL +H++
Sbjct: 5 SSGHP---EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK-KF 60
Query: 283 NKEKPFKCP 291
+ +
Sbjct: 61 HGDMSGPSS 69
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 93.7 bits (234), Expect = 7e-24
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 243 SANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTN 302
+ H ++PYKC C+ SF NL H +H EKP++C +C F + N
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPAN 60
Query: 303 LDRHLKKH 310
L H + H
Sbjct: 61 LKTHTRIH 68
Score = 91.4 bits (228), Expect = 5e-23
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
KP Y C C F NL H HTGE+PY+C C F+ +NL+ H R IH
Sbjct: 13 HSDKP---YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IH 68
Query: 283 NKEKPF 288
+ EKP+
Sbjct: 69 SGEKPY 74
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 92.5 bits (231), Expect = 2e-23
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 243 SANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTN 302
S + R + YKC C +SFS SS+L +H R H EKP+KC C + F Q+++
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSH 61
Query: 303 LDRHLKKH 310
L H + H
Sbjct: 62 LIGHHRVH 69
Score = 92.5 bits (231), Expect = 2e-23
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
+ Y C CGK F S++L++H RTHTGE+PYKC C ++F S+L H R +H
Sbjct: 14 RERRR---YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VH 69
Query: 283 NKEKPFK 289
P
Sbjct: 70 TGSGPSS 76
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 92.1 bits (230), Expect = 2e-23
Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
+G KP Y C CGK F RS+ L +H R HTGE+PYKC C ++FS +S L H R IH
Sbjct: 10 SGEKP---YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR-IH 65
Query: 283 NKEKPF 288
Sbjct: 66 TSGPSS 71
Score = 87.1 bits (217), Expect = 1e-21
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 246 LTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDR 305
+ H+GE+PY C C ++FS SS L +H R +H EKP+KC C + F Q + L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 306 HLKKH 310
H + H
Sbjct: 61 HQRIH 65
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 91.4 bits (228), Expect = 3e-23
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 226 KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 285
+ + C+ C + F R +L RH R+HT E+PY C C R+F+ L RH + IH+
Sbjct: 1 RS---FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Query: 286 K 286
Sbjct: 58 L 58
Score = 76.8 bits (190), Expect = 5e-18
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 258 PYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKK 309
+ C+ C R+F+ +L+RH R H EKP+ C LC+R F ++ L RH +K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 37.1 bits (87), Expect = 6e-04
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKH 310
+ F C +C R F +Q +L RH + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 82.8 bits (205), Expect = 6e-20
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 253 HTGEQPYKCKYCERSFSISSNLQRHVRNIHNK---EKPFKCPLCDRCFGQQTNLDRHLKK 309
+G +C+ C + ++L H R H + F C C + F + ++ H K
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 310 H 310
Sbjct: 61 S 61
Score = 82.5 bits (204), Expect = 8e-20
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 223 NTG-KPKDRYACKFCGKVFPRSANLTRHLRTHT---GEQPYKCKYCERSFSISSNLQRHV 278
++G C+ CG + A+L H R H + C++C + F ++ H
Sbjct: 2 SSGSSG---LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Query: 279 RNIHNKEKPFKCPLCDRCFG 298
H G
Sbjct: 59 SKSHPALLLAPQESSGPSSG 78
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 80.8 bits (200), Expect = 3e-19
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 242 RSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQ 299
NL ++ +PY C C+R FS S L RH+R IH +KPF+C +C R F +
Sbjct: 5 PMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSR 61
Query: 300 QTNLDRHLKKH 310
+L H++ H
Sbjct: 62 SDHLTTHIRTH 72
Score = 75.0 bits (185), Expect = 3e-17
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 231 YAC--KFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVR 279
YAC + C + F RS LTRH+R HTG++P++C+ C R+FS S +L H+R
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 42.7 bits (101), Expect = 9e-06
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 230 RYACKFCGKVFPRSANLTRHLRTHT 254
+ C+ C + F RS +LT H+RTHT
Sbjct: 49 PFQCRICMRNFSRSDHLTTHIRTHT 73
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 77.6 bits (192), Expect = 2e-18
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCF 297
+ + +PY C+ C + FS +L H++ +H E+P KC +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 69.5 bits (171), Expect = 1e-15
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 221 SNNTG-KPKDRYACKFCGKVFPRSANLTRHL-RTHTGEQPYKCKYCERSFS 269
S+ + KP Y C+ CGK F R +L H+ + HT E+P+KC+ S
Sbjct: 5 SSGSVGKP---YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 40.3 bits (95), Expect = 3e-05
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 281 IHNKEKPFKCPLCDRCFGQQTNLDRHLKK 309
+ KP+ C C + F + +L+ H+K+
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQ 34
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 74.3 bits (183), Expect = 5e-17
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 231 YACKF--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVR 279
+ C CGK + +S++L H RTHTGE+P+ C + CER F+ S L RH R
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 70.5 bits (173), Expect = 1e-15
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 243 SANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKC--PLCDRCFG 298
S+ + + + + C + C +++ SS+L+ H R H EKPF C C+R F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFA 60
Query: 299 QQTNLDRHLKKH 310
+ L RH + H
Sbjct: 61 RSDELSRHRRTH 72
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 71.8 bits (177), Expect = 2e-16
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCP 291
+ TG++PY+C C ++F +++L RH R H EKP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 56.0 bits (136), Expect = 9e-11
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLR-THTGEQPYKC 261
TG KP Y C CGK F ++ +L RH R HTGE+P
Sbjct: 8 TGKKP---YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRH 306
+KP++C C + F Q T+L RH
Sbjct: 3 SGS-SGTGKKPYECIECGKAFIQNTSLIRH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 5e-16
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC C ++FS +S L RH R IH EKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGP 43
Score = 59.8 bits (146), Expect = 4e-12
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGK F +++ L RH R HTGE+P
Sbjct: 8 TGEKP---YKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 9e-05
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC C + F Q + L RH + H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 6e-16
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY C C ++F+ SNL +H + IH EKP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGP 43
Score = 59.4 bits (145), Expect = 5e-12
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG +P Y C CGK F +NL +H + HTGE+P
Sbjct: 8 TGERP---YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
E+P+ C +C + F ++NL +H K H
Sbjct: 2 SSGS-SGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 70.7 bits (174), Expect = 6e-16
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY CK C +SF +S L +H R +H+ EKP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGP 43
Score = 60.3 bits (147), Expect = 2e-12
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCK 262
TG KP Y CK CGK F ++ L +H R H+GE+P
Sbjct: 8 TGEKP---YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 37.9 bits (89), Expect = 2e-04
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+ C C + F + L +H + H
Sbjct: 2 SSGS-SGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 70.2 bits (173), Expect = 7e-16
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+P++C C +SFSISS L H R IH EKP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQR-IHTGEKPSGP 43
Score = 59.4 bits (145), Expect = 5e-12
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP + C CGK F S+ L H R HTGE+P
Sbjct: 8 TGEKP---FECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKPF+C C + F + L H + H
Sbjct: 2 SSGS-SGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 70.2 bits (173), Expect = 7e-16
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+ YKC C + FS +S L +H + IH EKP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGP 43
Score = 61.0 bits (149), Expect = 2e-12
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG K Y C CGKVF R++ L++H + HTGE+P
Sbjct: 8 TGEKR---YKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 9e-05
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EK +KC C + F + + L +H K H
Sbjct: 2 SSGS-SGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.2 bits (173), Expect = 7e-16
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+P+KC C +SF S L RH +H EKP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGP 43
Score = 60.6 bits (148), Expect = 2e-12
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP + C CGK F + L RH HT E+P
Sbjct: 8 TGEKP---FKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 39.4 bits (93), Expect = 6e-05
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKPFKC +C + F ++ L+RH H
Sbjct: 3 SGS-SGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.2 bits (173), Expect = 8e-16
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+P++C C+++F+ SNL H R H EKP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQR-THTGEKPSGP 43
Score = 59.4 bits (145), Expect = 4e-12
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP + C C K F +NL H RTHTGE+P
Sbjct: 8 TGEKP---FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKPF+C C + F ++NL H + H
Sbjct: 2 SSGS-SGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.2 bits (173), Expect = 8e-16
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ +GE+PYKC C ++F ++L H R IH +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGP 43
Score = 62.1 bits (152), Expect = 6e-13
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+G KP Y C CGK F R +L H R HTG +P
Sbjct: 8 SGEKP---YKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EKP+KC C + F + T+L+ H + H
Sbjct: 2 SSGS-SGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.2 bits (173), Expect = 8e-16
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY C+ C ++F S LQ H R IH EKP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGP 43
Score = 59.5 bits (145), Expect = 4e-12
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C+ CGK F + L H R HTGE+P
Sbjct: 8 TGEKP---YNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+ C C + F + L H + H
Sbjct: 2 SSGS-SGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 70.5 bits (172), Expect = 9e-16
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 230 RYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+Y C+ CG + + L +H+RTHT +PY C YC SF NL +H++ K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK-SKAHSK 56
Score = 56.6 bits (136), Expect = 7e-11
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 259 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
Y C+ C S L++H+R H +P+ C C+ F + NL +H+K
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 69.8 bits (172), Expect = 9e-16
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC+ C ++F +SS+L +H +H+ E+P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSGP 43
Score = 61.4 bits (150), Expect = 1e-12
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C+ CGK F S++L +H H+GE+P
Sbjct: 8 TGEKP---YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 38.6 bits (91), Expect = 1e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC +C + F ++L +H H
Sbjct: 2 SSGS-SGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.8 bits (172), Expect = 9e-16
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC C + F +S+L RH IH EKP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGP 43
Score = 61.0 bits (149), Expect = 1e-12
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGKVF R+++L RH HTGE+P
Sbjct: 8 TGEKP---YKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC C + F + ++L RH H
Sbjct: 2 SSGS-SGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.8 bits (172), Expect = 9e-16
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ +GE+P+KCK C ++F + +L H+R IH EKP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGP 43
Score = 61.0 bits (149), Expect = 1e-12
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+G KP + CK CGK F ++ +L HLR HTGE+P
Sbjct: 8 SGEKP---FKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EKPFKC C + F Q +L HL+ H
Sbjct: 2 SSGS-SGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.9 bits (172), Expect = 1e-15
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TG +PY C C ++FS+ S+L H IH EKP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGP 43
Score = 59.1 bits (144), Expect = 7e-12
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGK F ++LT H HTGE+P
Sbjct: 8 TGVKP---YMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
KP+ C C + F ++L H H
Sbjct: 2 SSGS-SGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.9 bits (172), Expect = 1e-15
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ +GE+PY C YC ++F +S+ L RH R IH EKP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGP 43
Score = 60.6 bits (148), Expect = 2e-12
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+G KP Y C +CGK F SA L RH R HTGE+P
Sbjct: 8 SGEKP---YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 9e-05
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EKP+ C C + FG L RH + H
Sbjct: 2 SSGS-SGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 1e-15
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+P+KC C +S++ +L +H R +H EKP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGP 43
Score = 60.6 bits (148), Expect = 2e-12
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP + C CGK + + +LT+H R HTGE+P
Sbjct: 8 TGEKP---FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKPFKC C + + Q+ +L +H + H
Sbjct: 2 SSGS-SGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 1e-15
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ GE+ YKC C + FS SS+LQ H R +H EKP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR-VHTGEKPSGP 43
Score = 59.5 bits (145), Expect = 5e-12
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
G K Y C CGK F +S++L H R HTGE+P
Sbjct: 8 MGEKC---YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EK +KC +C + F Q ++L H + H
Sbjct: 3 SGS-SGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 1e-15
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+P++C+ C +SFS +S L H R IH E P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGP 43
Score = 58.3 bits (142), Expect = 1e-11
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP + C+ CGK F ++ L H R HTGE P
Sbjct: 8 TGEKP---HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 36.4 bits (85), Expect = 7e-04
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP +C C + F + L H + H
Sbjct: 2 SSGS-SGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.4 bits (171), Expect = 1e-15
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ +GE+PYKC C + F+ +S+L H R IH EKP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGP 43
Score = 60.6 bits (148), Expect = 2e-12
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+G KP Y C CGKVF ++++LT H R HTGE+P
Sbjct: 8 SGEKP---YKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EKP+KC C + F Q ++L H + H
Sbjct: 2 SSGS-SGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.4 bits (171), Expect = 1e-15
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC C + F+ +S+L RH IH EKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGP 43
Score = 60.2 bits (147), Expect = 3e-12
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGKVF ++++L RH HTGE+P
Sbjct: 8 TGEKP---YKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 40.5 bits (96), Expect = 3e-05
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC C + F Q ++L RH H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 1e-15
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC C + F +S L RH R IH EKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGP 43
Score = 59.4 bits (145), Expect = 4e-12
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGKVF ++ L+RH R HTGE+P
Sbjct: 8 TGEKP---YKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 8e-05
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC C + F + L RH + H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 1e-15
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY+C C ++FS ++L +H R +H+ EKP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGP 43
Score = 60.2 bits (147), Expect = 3e-12
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C C K F A+LT+H R H+GE+P
Sbjct: 8 TGEKP---YECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP++C +C + F +L +H + H
Sbjct: 3 SGS-SGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 69.5 bits (171), Expect = 1e-15
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TG++PY+C C ++F S+L H R H EKP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRR-SHTGEKPSGP 43
Score = 59.1 bits (144), Expect = 6e-12
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCK 262
TG +P Y C CGK F ++L H R+HTGE+P
Sbjct: 8 TGQRP---YECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 4e-04
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
++P++C C + F +++L H + H
Sbjct: 2 SSGS-SGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 2e-15
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+P++CK C +FS S +L +H+R H + P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGP 43
Score = 59.5 bits (145), Expect = 4e-12
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP + CK CG F S +L +HLR+H P
Sbjct: 8 TGEKP---FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 36.8 bits (86), Expect = 4e-04
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 280 NIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGP 315
+ EKPF+C C F +L +HL+ HE P
Sbjct: 5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 2e-15
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC C +SF S+L H R IH EKP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGP 43
Score = 59.8 bits (146), Expect = 3e-12
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C C K F ++LT H R HTGE+P
Sbjct: 8 TGEKP---YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 7e-04
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC +C + F ++L H + H
Sbjct: 3 SGS-SGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 69.0 bits (170), Expect = 2e-15
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY+C C+++F+ SNL H R H E
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQR-THTGESGPSS 43
Score = 60.2 bits (147), Expect = 2e-12
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C C K F +NL H RTHTGE
Sbjct: 8 TGEKP---YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP++C C + F ++NL H + H
Sbjct: 3 SGS-SGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 2e-15
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY C C ++F+I SNL +H + IH K+KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQK-IHTKQKPSGP 43
Score = 60.2 bits (147), Expect = 2e-12
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGK F +NL +H + HT ++P
Sbjct: 8 TGEKP---YICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+ C C + F ++NL +H K H
Sbjct: 3 SGS-SGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 2e-15
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC C + F+ +S+L H R IH KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGP 43
Score = 59.8 bits (146), Expect = 4e-12
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGKVF ++++L H R HTG +P
Sbjct: 8 TGEKP---YKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 39.4 bits (93), Expect = 6e-05
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC C + F Q ++L H + H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 2e-15
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+P+KC C +SF S++L +H R IH EKP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGP 43
Score = 59.4 bits (145), Expect = 4e-12
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG +P + C CGK F +SA+L +H R HTGE+P
Sbjct: 8 TGERP---HKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 7e-05
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
E+P KC C + F Q +L +H + H
Sbjct: 2 SSGS-SGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 2e-15
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC C ++F+ S L H + H E+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGP 43
Score = 59.4 bits (145), Expect = 4e-12
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGK F R + L H ++HTGE+
Sbjct: 8 TGEKP---YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC C + F +++ L H + H
Sbjct: 2 SSGS-SGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 69.1 bits (170), Expect = 2e-15
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC+ C + F +L H +H EKP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHM-VHTGEKPSGP 43
Score = 60.6 bits (148), Expect = 2e-12
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C+ CGK F +L H HTGE+P
Sbjct: 8 TGEKP---YKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC C + F + +L H H
Sbjct: 3 SGS-SGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 2e-15
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ +GE+P+KC+ C + F+ +S L H R +H EKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGP 43
Score = 59.1 bits (144), Expect = 7e-12
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+G KP + C+ CGK F +++ L H R HTGE+P
Sbjct: 8 SGEKP---FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EKPFKC C + F Q + L H + H
Sbjct: 2 SSGS-SGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 2e-15
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY+C C ++F+ +NL +H R IH EKP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQR-IHTGEKPSGP 43
Score = 60.2 bits (147), Expect = 3e-12
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGK F + ANLT+H R HTGE+P
Sbjct: 8 TGEKP---YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 9e-05
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP++C C + F Q+ NL +H + H
Sbjct: 2 SSGS-SGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 2e-15
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY+C C ++FS+ S+L H IH +KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQA-IHTGKKPSGP 43
Score = 59.1 bits (144), Expect = 6e-12
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCK 262
TG KP Y C CGK F ++LT H HTG++P
Sbjct: 8 TGEKP---YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 36.7 bits (86), Expect = 6e-04
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP++C C + F +++L H H
Sbjct: 2 SSGS-SGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 2e-15
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY+C C ++F+ SNL H + IH EKP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQK-IHTGEKPSGP 43
Score = 58.7 bits (143), Expect = 9e-12
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGK F +NL H + HTGE+P
Sbjct: 8 TGEKP---YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP++C C + F ++NL H K H
Sbjct: 2 SSGS-SGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 2e-15
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC+ C + ++ NL H + +H E+P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGP 43
Score = 61.0 bits (149), Expect = 1e-12
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C+ CGK + NL H + HTGE+P
Sbjct: 8 TGEKP---YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC C + + + NLD H K H
Sbjct: 3 SGS-SGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 3e-15
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC C ++F S+L H H+ EKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQA-THSGEKPSGP 43
Score = 58.7 bits (143), Expect = 1e-11
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGK F ++L H TH+GE+P
Sbjct: 8 TGEKP---YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC C + F +++L H H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 3e-15
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ GE+PY C C ++FS S L H+R H+ EKP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMR-THSGEKPSGP 43
Score = 59.5 bits (145), Expect = 4e-12
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
G KP Y C CGK F + L H+RTH+GE+P
Sbjct: 8 AGEKP---YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+ C C + F ++ L H++ H
Sbjct: 2 SSGS-SGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 3e-15
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC C ++F SNL H IH EKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGP 43
Score = 60.2 bits (147), Expect = 2e-12
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGK F +NLT H HTGE+P
Sbjct: 8 TGEKP---YKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 1e-04
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC C + F +NL H H
Sbjct: 3 SGS-SGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 3e-15
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY C C ++F +S++L +H+R +H +E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR-VHTQETLSGP 43
Score = 61.4 bits (150), Expect = 1e-12
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCK 262
TG KP Y+C CGK F SA+L +HLR HT E
Sbjct: 8 TGEKP---YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+ C +C + F +L++HL+ H
Sbjct: 2 SSGS-SGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 68.3 bits (168), Expect = 3e-15
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TG +PY C C ++F S L H R H E
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTR-THTGESGPSS 43
Score = 59.8 bits (146), Expect = 4e-12
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGK F + L H RTHTGE
Sbjct: 8 TGMKP---YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 35.5 bits (83), Expect = 0.001
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
KP+ C C + F ++ L H + H
Sbjct: 2 SSGS-SGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 3e-15
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+ Y CK C +SFS + L +H R +H+ EKP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGP 43
Score = 59.8 bits (146), Expect = 3e-12
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG K Y CK CGK F R+ L +H R H+GE+P
Sbjct: 8 TGEKL---YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EK + C C + F + L +H + H
Sbjct: 3 SGS-SGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 68.3 bits (168), Expect = 3e-15
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY+CK C ++FS +++L +H R +H EKP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGP 43
Score = 59.8 bits (146), Expect = 3e-12
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y CK CGK F ++ +L +H R HTGE+P
Sbjct: 8 TGEKP---YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 1e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP++C C + F Q T+L +H + H
Sbjct: 2 SSGS-SGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 4e-15
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TG +PY+C C ++FS +S L RH R +H EKP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGP 43
Score = 60.6 bits (148), Expect = 2e-12
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGK F +++ L RH R HTGE+P
Sbjct: 8 TGGKP---YQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
KP++C C + F Q + L RH + H
Sbjct: 3 SGS-SGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 68.3 bits (168), Expect = 4e-15
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TG +PY C C ++FS+ S L H R H KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGP 43
Score = 59.5 bits (145), Expect = 5e-12
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C C K F + L H R+HTG +P
Sbjct: 8 TGVKP---YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
KP+ C C + F ++ L H + H
Sbjct: 2 SSGS-SGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 4e-15
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY+CK C ++F+ ++L +H + H EKP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGP 43
Score = 61.4 bits (150), Expect = 8e-13
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCK 262
TG KP Y CK C K F + A+L +H +THTGE+P
Sbjct: 8 TGEKP---YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 6e-05
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP++C +C + F Q+ +L +H K H
Sbjct: 2 SSGS-SGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 4e-15
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY+C C ++FS +L H R IH+ +KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGP 43
Score = 59.1 bits (144), Expect = 6e-12
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGK F +L+ H R H+G++P
Sbjct: 8 TGEKP---YECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 35.9 bits (84), Expect = 0.001
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP++C +C + F + +L H + H
Sbjct: 2 SSGS-SGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 4e-15
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ + E+PYKC+ C + ++ NL H R +H EK
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGP 43
Score = 59.8 bits (146), Expect = 3e-12
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+ KP Y C+ CGK + R NL H R H GE+
Sbjct: 8 SVEKP---YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EKP+KC C + + ++ NLD H + H
Sbjct: 3 SGS-SGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 68.1 bits (167), Expect = 5e-15
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 249 HLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+P+ C + C FS S L RH R H+ KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGP 45
Score = 58.1 bits (141), Expect = 2e-11
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 224 TG-KPKDRYACKF--CGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP +AC + CG F RS L+RH R+H+G +P
Sbjct: 8 TGEKP---FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 40.7 bits (96), Expect = 2e-05
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 277 HVRNIHNKEKPFKC--PLCDRCFGQQTNLDRHLKKHEADGP 315
EKPF C P C F + L RH + H P
Sbjct: 3 SGS-SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 68.0 bits (167), Expect = 5e-15
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ GE+ +KC+ C+ FS +S+L+ H +H EKP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGP 43
Score = 57.6 bits (140), Expect = 2e-11
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 221 SNNTG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
S+ G K + C+ C F ++++L H H GE+P
Sbjct: 5 SSGMGEKT---WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 281 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EK +KC CD CF Q ++L H H
Sbjct: 6 SGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.6 bits (166), Expect = 5e-15
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY+C C +SF+ S L H + IH EKP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGP 43
Score = 58.7 bits (143), Expect = 8e-12
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCK 262
TG KP Y C CGK F + + L H + HTGE+P
Sbjct: 8 TGEKP---YECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 3e-04
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP++C +C + F +++ L H + H
Sbjct: 2 SSGS-SGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 67.6 bits (166), Expect = 6e-15
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ G PYKC CE+SFS L H R +H +EKP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPSGP 43
Score = 55.6 bits (135), Expect = 9e-11
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 221 SNNTG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
S+ G P Y C C K F L H R HT E+P
Sbjct: 5 SSGAGVNP---YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 38.3 bits (90), Expect = 2e-04
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 279 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ P+KC C++ F + L H + H
Sbjct: 4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 67.5 bits (166), Expect = 6e-15
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+P+KC C + FS S L H + +H EKP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGP 43
Score = 58.7 bits (143), Expect = 9e-12
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP + C CGK F R + L H + HTGE+P
Sbjct: 8 TGEKP---FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKPFKC C + F +++ L+ H K H
Sbjct: 2 SSGS-SGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.5 bits (166), Expect = 7e-15
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ G++ +KC C+++F+ SS+L H R IH EKP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGP 43
Score = 58.3 bits (142), Expect = 1e-11
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
G K + C C K F +S++LT H R HTGE+P
Sbjct: 8 AGKKL---FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+K FKC C + F Q ++L H + H
Sbjct: 3 SGS-SGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.6 bits (166), Expect = 7e-15
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ +GE+P++C+ C + F+ +S+L H R +H EKP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGP 43
Score = 59.1 bits (144), Expect = 7e-12
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+G KP + C+ CGK F ++++L H R HTGE+P
Sbjct: 8 SGEKP---FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 39.1 bits (92), Expect = 8e-05
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EKPF+C C + F Q ++L H + H
Sbjct: 2 SSGS-SGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.5 bits (166), Expect = 7e-15
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY C C +SF S+L RH R IH EKP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGP 43
Score = 60.2 bits (147), Expect = 2e-12
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGK F + ++L RH R HTGE+P
Sbjct: 8 TGEKP---YICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+ C C + F Q+++L+RH + H
Sbjct: 3 SGS-SGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.5 bits (166), Expect = 7e-15
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC C + F+ +S+L RH IH EKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
Score = 60.2 bits (147), Expect = 2e-12
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGKVF ++++L RH HTGE+P
Sbjct: 8 TGEKP---YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC C + F Q ++L RH H
Sbjct: 3 SGS-SGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 8e-15
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC C +SF+ S L+ H + H E+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGP 43
Score = 58.3 bits (142), Expect = 1e-11
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGK F + L H + HTGE+
Sbjct: 8 TGEKP---YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 39.4 bits (93), Expect = 6e-05
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC C + F ++ L H K H
Sbjct: 3 SGS-SGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.1 bits (165), Expect = 8e-15
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TG++PYKC C + F+ +S+L RH IH EKP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
Score = 60.2 bits (147), Expect = 3e-12
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGKVF ++++L RH HTGE+P
Sbjct: 8 TGKKP---YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+KP+KC C + F Q ++L RH H
Sbjct: 3 SGS-SGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 67.2 bits (165), Expect = 8e-15
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TG++P++C +C +SF NL H R IH EK
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPS 43
Score = 59.5 bits (145), Expect = 5e-12
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP + C CGK F NL H R HTGE+
Sbjct: 8 TGQKP---FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+KPF+C C + F + NL H + H
Sbjct: 3 SGS-SGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 8e-15
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ +GE+PY C C ++F S+L H++ H +EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGP 43
Score = 61.4 bits (150), Expect = 9e-13
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+G +P Y C CGK F R ++L HL+ H E+
Sbjct: 8 SGERP---YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 280 NIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ + E+P+ C C + FG+ ++L HLK+H
Sbjct: 5 SSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 8e-15
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+P+ C C ++FS L +H R IH EKP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR-IHTGEKPSGP 43
Score = 59.8 bits (146), Expect = 3e-12
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP + C CGK F L +H R HTGE+P
Sbjct: 8 TGEKP---FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKPF C C + F L++H + H
Sbjct: 3 SGS-SGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC C ++F +S+ +H R +H ++P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGP 43
Score = 59.1 bits (144), Expect = 6e-12
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGK F +++ T+H R HTG++P
Sbjct: 8 TGEKP---YKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC C + FG ++ +H + H
Sbjct: 3 SGS-SGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ +GE+P+KC+ C + F +S H R H+ EKP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGP 43
Score = 59.5 bits (145), Expect = 4e-12
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+G KP + C+ CGK F ++ H R+H+GE+P
Sbjct: 8 SGEKP---FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EKPFKC C + F + H + H
Sbjct: 3 SGS-SGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE P+ C C + F+ +NL H + IH E+P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGP 43
Score = 58.3 bits (142), Expect = 1e-11
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG P + C CGKVF NL H + HTGE+P
Sbjct: 8 TGENP---FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 38.6 bits (91), Expect = 1e-04
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
E PF C C + F +TNL H K H
Sbjct: 3 SGS-SGTGENPFICSECGKVFTHKTNLIIHQKIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE PY+C C ++FS L H R H EKP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQR-THAGEKPSGP 43
Score = 60.6 bits (148), Expect = 2e-12
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG P Y C CGK F R L H RTH GE+P
Sbjct: 8 TGENP---YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
E P++C C + F ++ L H + H
Sbjct: 2 SSGS-SGTGENPYECHECGKAFSRKYQLISHQRTH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PYKC C + F+ +S+L RH R +H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGP 43
Score = 60.2 bits (147), Expect = 3e-12
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGKVF ++++L RH R HTG +P
Sbjct: 8 TGEKP---YKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC C + F Q ++L RH + H
Sbjct: 3 SGS-SGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 1e-14
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ +GE+PYKC C + + +L H R +H EK
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQR-VHTGEKLSGP 43
Score = 59.9 bits (146), Expect = 4e-12
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+G KP Y C CGK + R +L H R HTGE+
Sbjct: 8 SGEKP---YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EKP+KC C + + ++ +LD H + H
Sbjct: 3 SGS-SGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 2e-14
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ +GE+PY C C ++FS S L H R H EKP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQR-THTGEKPSGP 43
Score = 59.9 bits (146), Expect = 4e-12
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+G KP Y C CGK F + + L+ H RTHTGE+P
Sbjct: 8 SGEKP---YGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EKP+ C C + F Q++ L H + H
Sbjct: 3 SGS-SGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 2e-14
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+PY+C C +SF S L H R IH E P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGP 43
Score = 58.3 bits (142), Expect = 1e-11
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG KP Y C CGK F + + L H R HTGE P
Sbjct: 8 TGEKP---YECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 36.4 bits (85), Expect = 7e-04
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP++C C + F +++ L H + H
Sbjct: 3 SGS-SGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 2e-14
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+ Y+C C ++F+ S L H R IH EKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGP 43
Score = 58.3 bits (142), Expect = 1e-11
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG + Y C CGK F R + L H R HTGE+P
Sbjct: 8 TGERH---YECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
E+ ++C C + F +++ L H + H
Sbjct: 2 SSGS-SGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 66.4 bits (163), Expect = 2e-14
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ +GE+PY+C C ++F S L H R H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHER-THAGVSGPSS 43
Score = 56.4 bits (137), Expect = 6e-11
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+G KP Y C CGK F + L H RTH G
Sbjct: 8 SGEKP---YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 36.4 bits (85), Expect = 7e-04
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EKP++C C + F ++ L H + H
Sbjct: 2 SSGS-SGSGEKPYECNECGKAFIWKSLLIVHERTH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 2e-14
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ +G++PY+CK C ++F +L +H R +H E+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKR-VHTGERSSGP 43
Score = 61.0 bits (149), Expect = 1e-12
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 221 SNNTG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCK 262
S+ +G KP Y CK C K F + +L +H R HTGE+
Sbjct: 5 SSGSGKKP---YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 37.1 bits (87), Expect = 4e-04
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 279 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ + +KP++C C + F Q +L++H + H
Sbjct: 4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 67.3 bits (164), Expect = 3e-14
Identities = 16/69 (23%), Positives = 21/69 (30%), Gaps = 10/69 (14%)
Query: 231 YACKFCGKVFPRSANLTRHL-RTHTGEQPYKCKYCE--------RSFSISSNLQRHVRNI 281
K C + F L H+ H G C +SF L H+R +
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-V 84
Query: 282 HNKEKPFKC 290
H EK
Sbjct: 85 HTGEKSGPS 93
Score = 56.9 bits (137), Expect = 1e-10
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 252 THTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFK--------CPLCDRCFGQQTNL 303
+ K C+R+FS L HV H CP + F + L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 304 DRHLKKH 310
H++ H
Sbjct: 79 VNHIRVH 85
Score = 51.5 bits (123), Expect = 1e-08
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 225 GKPKDRYACKF-----CGKVFPRSANLTRHLRTHTGEQPYKC 261
G ++ + C + GK F L H+R HTGE+
Sbjct: 52 GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 3e-14
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+ Y+C C ++F S L H R IH EKP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGP 43
Score = 58.7 bits (143), Expect = 8e-12
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG + Y C CGK F + + L+ H R H GE+P
Sbjct: 8 TGERH---YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 36.0 bits (84), Expect = 0.001
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
E+ ++C C + F Q++ L H + H
Sbjct: 3 SGS-SGTGERHYECSECGKAFIQKSTLSMHQRIH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 3e-14
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TG + ++C C ++F+ S L H + IH EKP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQK-IHTGEKPSGP 43
Score = 59.1 bits (144), Expect = 7e-12
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
TG K + C CGK F R + L+ H + HTGE+P
Sbjct: 8 TGGKH---FECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 7e-04
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 276 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
K F+C C + F +++ L H K H
Sbjct: 2 SSGS-SGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 65.2 bits (160), Expect = 4e-14
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 288
+ GE+PY C+ C F L+ H+R IH P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR-IHTGSGPS 40
Score = 55.6 bits (135), Expect = 9e-11
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPY 259
G KP Y C+ CG F L HLR HTG P
Sbjct: 7 GGEKP---YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 282 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+ C +C F L HL+ H
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 64.9 bits (159), Expect = 5e-14
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 288
+ GE+PYKC+ C F ++L+ HV IH P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL-IHTGSGPS 40
Score = 56.0 bits (136), Expect = 7e-11
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPY 259
G KP Y C+ CG F + A+L H+ HTG P
Sbjct: 7 GGEKP---YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 39.4 bits (93), Expect = 6e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 281 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
EKP+KC C F Q +L H+ H
Sbjct: 5 SSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 5e-14
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ +GE+P+KC C + F S+L H+R +H++EK
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGP 43
Score = 57.9 bits (141), Expect = 2e-11
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+G +P + C CGK F R ++L HLR H+ E+
Sbjct: 8 SGERP---FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 39.1 bits (92), Expect = 9e-05
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 279 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ + E+PFKC C + FG++++L HL+ H
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 5e-14
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ GE+PY+C C +SFS S L +H H +EKP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGP 43
Score = 59.5 bits (145), Expect = 5e-12
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
G KP Y C CGK F S LT+H THT E+P
Sbjct: 8 EGEKP---YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 36.0 bits (84), Expect = 8e-04
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 279 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EKP++C C + F L +H H
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 64.9 bits (159), Expect = 7e-14
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ GE+ ++C C + F +SN +H R IH EKP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRR-IHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 1e-10
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
G + + C CGK F +++N +H R HTGE+P
Sbjct: 8 HGERG---HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 39.1 bits (92), Expect = 7e-05
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 279 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ + E+ +C C + F Q +N +H + H
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 66.3 bits (161), Expect = 1e-13
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 230 RYACKFCGKVFPRSANLTRHLR-----THTGEQPYKCKYCERSFSISSNLQRHVRNIHNK 284
++ CK C + LT H+ + S +L +
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK-EDA 77
Query: 285 EKPFKCPLCDRCFGQQTNLDRHLKKH 310
+K KC C F +L H+ K
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 58.2 bits (140), Expect = 9e-11
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 242 RSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQT 301
++ + TG ++CK C ++ L H+ D ++
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN--ETGHYRDDNHETDNNNPKRW 60
Query: 302 NLDRHLKKHEADGP 315
+ R E +G
Sbjct: 61 SKPRKRSLLEMEGK 74
Score = 51.3 bits (122), Expect = 2e-08
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 224 TGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRH-VRNIH 282
+ PR +L ++ KC YC SF +L H ++ H
Sbjct: 46 RDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Query: 283 NKEKPFK 289
++
Sbjct: 106 YQKVSGP 112
Score = 35.1 bits (80), Expect = 0.010
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 212 SPKQFQESISNNTGKPKDRYACKFCGKVFPRSANLTRHL--RTHTGEQPYK 260
P++ + C +CG F +L+ H+ H +
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE+P KC C ++F S L H R H +K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQR-THVDDKHSGP 43
Score = 58.0 bits (141), Expect = 2e-11
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 221 SNNTG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
S+ TG KP C CGK F + L H RTH ++
Sbjct: 5 SSGTGEKP---CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 36.0 bits (84), Expect = 8e-04
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 279 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EKP KC C + F ++ L H + H
Sbjct: 4 GSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 62.6 bits (153), Expect = 3e-13
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ + + ++C C R F++ S+L +H R IH EKP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQR-IHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 4e-10
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 221 SNNTG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
S+ + K + C CG+ F ++L +H R HTGE+P
Sbjct: 5 SSGSSTKS---HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 281 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ K +C C R F +++L++H + H
Sbjct: 6 SGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 61.8 bits (151), Expect = 7e-13
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 288
+ GE+PY+C C ++FS +L H+R +H P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGPS 40
Score = 52.2 bits (126), Expect = 2e-09
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPY 259
G KP Y C CGK F + +L H+R HTG P
Sbjct: 7 GGEKP---YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGP 315
EKP++C C + F Q+ +L H++ H GP
Sbjct: 2 SSG-SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 61.0 bits (149), Expect = 1e-12
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 251 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+GE PY+C C ++F+ L H R H E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQR-THAGESGPSS 41
Score = 59.1 bits (144), Expect = 5e-12
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+G P Y C CGK F R L H RTH GE
Sbjct: 6 SGENP---YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 35.6 bits (83), Expect = 0.001
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 279 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ + E P++C C + F ++ L H + H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTH 33
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 60.6 bits (148), Expect = 2e-12
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ TGE PY+C C + FS L H + H+ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQK-THSGQSGPSS 43
Score = 57.1 bits (139), Expect = 3e-11
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 221 SNNTG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
S+ TG P Y C CGKVF R L H +TH+G+
Sbjct: 5 SSGTGENP---YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 279 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ E P++C C + F ++ L H K H
Sbjct: 4 GSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 60.6 bits (148), Expect = 2e-12
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 251 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+GE+P+ C CE++FS S L H + H +EKP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGP 41
Score = 58.7 bits (143), Expect = 8e-12
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 221 SNNTG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
S ++G KP + C C K F + L H +TH E+P
Sbjct: 3 SGSSGEKP---FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 281 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EKPF C C++ F ++ L H + H
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.5 bits (145), Expect = 5e-12
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ T + Y C C ++F+ +L RH + IH ++
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK-IHTRKSGPSS 43
Score = 53.4 bits (129), Expect = 7e-10
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
T K Y C CGK F R +LTRH + HT +
Sbjct: 8 TDSKS---YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 38.7 bits (91), Expect = 9e-05
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 281 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
K + C C + F + +L RH K H
Sbjct: 6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 62.3 bits (150), Expect = 5e-12
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 201 LIRSQLPPLANSPKQFQES---ISNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQ 257
LIR+ + L ++P+ ES K ++ C C F S +L +H+R E
Sbjct: 42 LIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EH 99
Query: 258 PYKCKYCERSFSISSNLQRHVRNIHN 283
C C++ F+ + + HV HN
Sbjct: 100 TKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 56.9 bits (136), Expect = 3e-10
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 240 FPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQ 299
++ L + C C FS S +L++H+R E CP+C + F
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRY---TEHTKVCPVCKKEFTS 112
Query: 300 QTNLDRHLKKH 310
+ H+ K
Sbjct: 113 TDSALDHVCKK 123
Score = 41.1 bits (95), Expect = 1e-04
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 2/94 (2%)
Query: 218 ESISNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRH 277
+S S + R LT + + + SS L R
Sbjct: 7 DSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRL 66
Query: 278 VRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHE 311
+ F CPLC F +L +H++ E
Sbjct: 67 LA--SKAISQFVCPLCLMPFSSSVSLKQHIRYTE 98
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 59.7 bits (144), Expect = 7e-12
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Query: 242 RSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQT 301
S + + + H G++ KC C F S ++ K C C + Q+
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRST--------LSRRKTPMCEKCRKDSCQEA 53
Query: 302 NLDRHLKKH 310
L++
Sbjct: 54 ALNKDEGNE 62
Score = 45.4 bits (107), Expect = 1e-06
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 288
C CG +F R + L+R + C+ C + + L + + +K
Sbjct: 19 QKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEG-NESGKKTS 68
Score = 42.0 bits (98), Expect = 2e-05
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 214 KQFQESISNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPY 259
F + + K C+ C K + A L + +G++
Sbjct: 26 IIFIRRSTLSRRKT---PMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 58.0 bits (141), Expect = 2e-11
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+ +GE+ + C C ++F S L+ H R +H EK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQR-VHMGEKCSGP 43
Score = 49.9 bits (120), Expect = 1e-08
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+G K + C CGK F + L H R H GE+
Sbjct: 8 SGEKS---HTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 34.1 bits (79), Expect = 0.004
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 281 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EK C C + F + L H + H
Sbjct: 6 SGSGEKSHTCDECGKNFCYISALRIHQRVH 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 57.2 bits (139), Expect = 3e-11
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 221 SNNTG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPY 259
S ++G + Y C+ CGK F + +LT H R HTG P
Sbjct: 3 SGSSGQRV---YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 53.7 bits (130), Expect = 4e-10
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 251 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 288
+G++ Y+C+ C +SF +L H R IH P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHER-IHTGSGPS 39
Score = 32.5 bits (75), Expect = 0.014
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 282 HNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGP 315
+ ++ ++C C + F Q+ +L H + H GP
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 56.4 bits (135), Expect = 3e-10
Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 4/84 (4%)
Query: 226 KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 285
+ K+ Y C+ C H R C YC F Q H +
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES--KCEY 67
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKK 309
K C C R F ++ RH +
Sbjct: 68 KKLTCLECMRTFKSSFSIWRHQVE 91
Score = 45.7 bits (107), Expect = 2e-06
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 228 KDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 285
++ C +C F H + + C C R+F S ++ RH +HN+
Sbjct: 40 RNAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 44.5 bits (104), Expect = 4e-06
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 255 GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHE 311
++ Y+C+ C S H R N CP C F H K E
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEHESKCE 66
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 54.2 bits (131), Expect = 3e-10
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFK 289
+ GE PY C C +SF+ +L H R ++ P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQR-SCSQSGPSS 41
Score = 48.4 bits (116), Expect = 4e-08
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 226 KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYK 260
P Y C CGK F + +L H R+ + P
Sbjct: 10 TP---YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 36.1 bits (84), Expect = 7e-04
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 282 HNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGP 315
E P+ C C + F Q+ +L H + GP
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 53.5 bits (129), Expect = 5e-10
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 251 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 290
+GE+PY C C+ +FS ++ L +H + +H +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQK-MHTVKSGPSS 41
Score = 48.5 bits (116), Expect = 4e-08
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 224 TG-KPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKC 261
+G KP Y+C C + F + L +H + HT +
Sbjct: 6 SGEKP---YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 34.6 bits (80), Expect = 0.003
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 282 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ EKP+ C C F L +H K H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 52.7 bits (127), Expect = 1e-09
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVR 279
R TG +P++C C+RSFS S +L H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 43.9 bits (104), Expect = 1e-06
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 277 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
R KPF+CP CDR F + +L H K+H
Sbjct: 2 STR-GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 38.9 bits (91), Expect = 7e-05
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 230 RYACKFCGKVFPRSANLTRHLRTH 253
+ C C + F RS +L H + H
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRKRH 34
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 52.6 bits (126), Expect = 1e-09
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 224 TGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYC 264
+G+ + + AC+ CGK+F +L RH +H+GE+PY
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 48.0 bits (114), Expect = 5e-08
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 251 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLC 293
+ + C+ C + F +L RH H+ EKP+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPS 46
Score = 32.2 bits (73), Expect = 0.021
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 282 HNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGP 315
K C +C + F +L+RH H + P
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP 40
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 48.0 bits (115), Expect = 4e-08
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 231 YAC--KFCGKVFPRSANLTRHLRTHTGE 256
+ C +CGK F RS L RH RTHTGE
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 37.6 bits (88), Expect = 2e-04
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 258 PYKCKY--CERSFSISSNLQRHVRNIHNKEK 286
P+ C + C + F+ S LQRH R H EK
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKR-THTGEK 31
Score = 31.0 bits (71), Expect = 0.040
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 286 KPFKC--PLCDRCFGQQTNLDRHLKKH 310
+PF C C + F + L RH + H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 46.8 bits (111), Expect = 1e-07
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 248 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 287
+ GE P+KC C+R F+ + L +H R H ++
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER-THARKSG 40
Score = 42.2 bits (99), Expect = 5e-06
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 282 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
E PFKC CDR F Q+ L +H + H
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 40.6 bits (95), Expect = 2e-05
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQP 258
+ C C +VF + L +H RTH +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 47.1 bits (111), Expect = 5e-07
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 3/76 (3%)
Query: 245 NLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH---NKEKPFKCPLCDRCFGQQT 301
+ + + E Y+CKYC + HV + H + C C+ +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 302 NLDRHLKKHEADGPTI 317
L H K+
Sbjct: 65 ALSEHNLKYHPGEENF 80
Score = 45.1 bits (106), Expect = 2e-06
Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 226 KPKDRYACKFCGKVFPRSANLTRHLRT-HTG---EQPYKCKYCERSFSISSNLQRHVRNI 281
K + Y CK+C P T H+ + H Y C C L H
Sbjct: 14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKY 73
Query: 282 HNKEKPFKCPLCDR 295
H E+ FK + R
Sbjct: 74 HPGEENFKLTMVKR 87
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 44.2 bits (105), Expect = 8e-07
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGE 256
+ C+ C + F R +L RH R+HT E
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 38.8 bits (91), Expect = 7e-05
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 258 PYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+ C+ C R+F+ +L+RH R H EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYR-SHTNEK 29
Score = 36.9 bits (86), Expect = 3e-04
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKH 310
+ F C +C R F +Q +L RH + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 2e-06
Identities = 34/178 (19%), Positives = 46/178 (25%), Gaps = 69/178 (38%)
Query: 132 IKSRSLSTYPVLFPHPVMLEAMYRARDKVPRLPLPYSMNSPPGYPGRPAYPFINSGLLNG 191
I R YP P +LE S G P+ S L
Sbjct: 306 IGVRCYEAYPNTSLPPSILED------------------SLENNEGVPSPMLSISNLTQE 347
Query: 192 HPIQSPTIDLIRSQLPP-------LANSPKQFQESISNNTGKPKDRYACKFCGKVFPRSA 244
+Q ++ S LP L N K +G P+ Y
Sbjct: 348 Q-VQD-YVNKTNSHLPAGKQVEISLVNGAKNL-----VVSGPPQSLYG------------ 388
Query: 245 NLTRHLRTH---TGEQPYKCKYCER--SFS-----ISSNLQRHVRNIHNKEKPFKCPL 292
L LR +G + + ER FS ++S PF L
Sbjct: 389 -LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS--------------PFHSHL 431
Score = 40.0 bits (93), Expect = 0.001
Identities = 68/469 (14%), Positives = 114/469 (24%), Gaps = 207/469 (44%)
Query: 98 PTPSENLEVNYR-SSPASTKDEL----------QVQDDDRSSPPNIKSRSLSTYPVLF-- 144
P P+E + ++PA EL V+ + + L+ + +
Sbjct: 42 PEPTEGFAADDEPTTPA----ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 145 ---PHPV-----------------MLEAMYRARDKVPRLPLPYSMNSPPGYPGRPAYPFI 184
H + +++ AR RP
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA----------------KRPFDKKS 141
Query: 185 NSGLLN--------------G------------------HPIQSPTIDLIRSQLPPLANS 212
NS L G H + I L L +
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 213 P----KQFQESI------SNNTGKPKDRY---------------------ACKFCG---- 237
K F + + N + P Y K G
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 238 KVFPRSANLTRHLR----------THTGEQPYKC--KYCERSFSISSNLQRHVRNIHNKE 285
++ T H + T + E + K F I VR
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG------VR------ 309
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKHEADGPTILDD--RNG-GIPSPSMIHNRCRPPSGIL 342
C + T+L P+IL+D N G+PSP M+ L
Sbjct: 310 -------CYEAYP-NTSLP----------PSILEDSLENNEGVPSP-MLS--IS---N-L 344
Query: 343 NDDSYFEEIRSFMGKVSADGNRLVQRVSSLSRANYNYYLPHQEDAENNNNINSKKE-ILS 401
+ + + N +LP + E + +N K ++S
Sbjct: 345 TQEQVQDYVNKT-----------------------NSHLPAGKQVE-ISLVNGAKNLVVS 380
Query: 402 -PSEKDNYSSRSSTSSLGSTHAVPHPPRTKDVPESTREKTPD----PVT 445
P + S +L A +++ +P S R+ PV
Sbjct: 381 GPPQ----SLYGLNLTLRKAKAPSGLDQSR-IPFSERKLKFSNRFLPVA 424
Score = 38.9 bits (90), Expect = 0.004
Identities = 63/407 (15%), Positives = 108/407 (26%), Gaps = 130/407 (31%)
Query: 91 RNLILRS---------PTPS----ENLEVNYRSS-PASTKDELQVQDDDRSSPPNIKSRS 136
R L L PT S L+ + P T + DD+ ++P + +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPT-EGFA-ADDEPTTPAELVGKF 64
Query: 137 LSTYPVLFPHPVMLEAMYRARDKVPRLPLPYSMNSPPGYPGRPAYPFINSGLLNGHPIQS 196
L + ++ + D+V L L F + L G+ I +
Sbjct: 65 LG-----YVSSLVEPSKVGQFDQVLNLCLTE---------------F-ENCYLEGNDIHA 103
Query: 197 PTIDLIRSQLPPLANSPKQFQESISNNTGKPKDRY--ACKFCGKVFPR---SANLTRHLR 251
L L + + +E I N Y A + F + SA L R +
Sbjct: 104 ----LAAKLLQENDTTLVKTKELIKN--------YITARIMAKRPFDKKSNSA-LFRAVG 150
Query: 252 THT-------GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLD 304
G Q Y F L R+++ L
Sbjct: 151 EGNAQLVAIFGGQGNTDDY----FE---EL----RDLYQTYHVLVGDLIKFS----AETL 195
Query: 305 RHLKKHEADGPTILDDRNGGIPSPSMIHNRCRPPSGILNDDSYFEEIRSFMGKVSADGNR 364
L + D + G+ + N P D Y I +S
Sbjct: 196 SELIRTTLDAEKVFTQ---GLNILEWLENPSNTP-----DKDYLLSI-----PISCPLIG 242
Query: 365 LVQ--------RVSSLSRANYNYYLP----HQEDAENNNNINSKKEIL-------SPSEK 405
++Q ++ + YL H + ++ + S +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG------------LVTAVAIAETDSWE 290
Query: 406 DNYSSRSSTSSL----G--STHAVPH---PPRTKDVPESTREKTPDP 443
+ S ++ G A P+ PP + E P P
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Score = 35.8 bits (82), Expect = 0.034
Identities = 51/301 (16%), Positives = 76/301 (25%), Gaps = 108/301 (35%)
Query: 182 PF-INSGLLNGHPIQSPTIDLIR-SQLPPLANSPKQFQESISNNTGKPKDRYA------- 232
P ++ G L H + PT SQL +QF + + +P + +A
Sbjct: 8 PLTLSHGSLE-HVLLVPTASFFIASQLQ------EQFNKILP----EPTEGFAADDEPTT 56
Query: 233 -----CKFCG----KVFPRSANLTRH-LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 282
KF G V P L E E + + N +IH
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE-------FENCY-LEGN------DIH 102
Query: 283 NKEKPFKCPLCDRCFGQQTNLDRHLKKH-EADGPTILDDRNGGIPSPSMIHNRCRPPSGI 341
L +K + A I+ R S S + +
Sbjct: 103 A----LAAKLLQENDTTLVKTKELIKNYITA---RIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 342 L--------NDDSYFEEIRSFMGKVSADGNRLVQRVSSLSRANYNYYLPHQEDAENNNNI 393
L N D YFEE+R Y Y D I
Sbjct: 156 LVAIFGGQGNTDDYFEELRDL----------------------YQTYHVLVGDL-----I 188
Query: 394 NSKKEILSPSEKDNYSSRSSTSSLGSTHAVPHPPRTKDVPE--STREKTPD-------PV 444
E LS + + + ++ E TPD P+
Sbjct: 189 KFSAETLSELIRTTLDAE------------KVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 445 T 445
+
Sbjct: 237 S 237
Score = 31.6 bits (71), Expect = 0.60
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 24/87 (27%)
Query: 323 GGIPSPSMIHNRCRPPSGILNDDSYFEEIRSFMGKVSADGNRLVQRVSSLSRANYNYYLP 382
G + MI P + E ++ + +V LV+ + NYN +
Sbjct: 1802 LGRSNYGMI--AINPGRVAASFSQ--EALQYVVERVGKRTGWLVE-I-----VNYN--VE 1849
Query: 383 HQ-----------EDAENN-NNINSKK 397
+Q + N N I +K
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNFIKLQK 1876
Score = 29.6 bits (66), Expect = 2.8
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 13/50 (26%)
Query: 406 DNYSSRSSTSSLGS-THAVPHPPR------------TKDVPESTREKTPD 442
D YS+R T S GS H + P K +PE T D
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD 51
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 42.0 bits (99), Expect = 6e-06
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 223 NTGKPKDRYACKF--CGKVFPRSANLTRHLRTHTGE 256
+ GK K ++ C CGKV+ ++++L HLR HTGE
Sbjct: 2 DPGKKK-QHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 31.2 bits (71), Expect = 0.041
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 254 TGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 286
++ + C C + + +S+L+ H+R H E+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLR-WHTGER 37
Score = 28.9 bits (65), Expect = 0.25
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 283 NKEKPFKCPL--CDRCFGQQTNLDRHLKKH 310
K+K C + C + +G+ ++L HL+ H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 39.2 bits (90), Expect = 2e-04
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 226 KPKDRYACKFCGKVFPRS-ANLTRHLRT-HTGEQPYKCKYCERSFSISSNLQRHVRNIHN 283
+ C C V ++ L +H+ + KC++C + F + L H H+
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 284 KEKP 287
+
Sbjct: 80 AKPS 83
Score = 34.9 bits (79), Expect = 0.007
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 259 YKCKYCER-SFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGPTI 317
C C + L++H+ + KC C + F + L+ H + P+
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD 84
Query: 318 LDDRNGGIPSPS 329
+ GG PS
Sbjct: 85 AEASEGGESGPS 96
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 37.1 bits (86), Expect = 4e-04
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 217 QESISNNTGKPKDR-YACKF--CGKVFPRSANLTRHLRTHTGE 256
+ SI + D+ + C F C K F R N+ H++TH +
Sbjct: 4 RGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 26.0 bits (57), Expect = 3.8
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 283 NKEKPFKCPL--CDRCFGQQTNLDRHLKKHEAD 313
+K F+C C + F ++ N+ H++ H D
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 26.0 bits (57), Expect = 4.0
Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 249 HLRTHTGEQP---YKCKY--CERSFSISSNLQRHVRN 280
+ + E P ++C + C ++F N++ H++
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT 42
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 37.0 bits (85), Expect = 4e-04
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 253 HTGEQPYKCKYCERSFSISSNLQRHVR 279
+G++P+ C+ C +F+ +N RH++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 33.6 bits (76), Expect = 0.005
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 282 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
+ ++PF C +C F + N RHLK H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 30.9 bits (69), Expect = 0.052
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHT 254
+ C+ C F AN RHL+ HT
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHT 31
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 36.8 bits (84), Expect = 4e-04
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
+ C++C KVF +L HLR HT E+
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 29.8 bits (66), Expect = 0.13
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 259 YKCKYCERSFSISSNLQRHVRNIHNKEK 286
+ C+YC + F +LQ H+R IH EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLR-IHTNEK 36
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 36.7 bits (84), Expect = 5e-04
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+PY C +C+R F+ LQRHVR IH EK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVR-IHTGEK 30
Score = 35.5 bits (81), Expect = 0.001
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ 257
Y C C + F L RH+R HTGE+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 27.0 bits (59), Expect = 1.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
KP+ C C R F L RH++ H +
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 5e-04
Identities = 58/515 (11%), Positives = 113/515 (21%), Gaps = 196/515 (38%)
Query: 46 HNGPHMSPAGKPPSSPDSERHEEQP------LDLRVDHKKVFLSRNMEDENRNL------ 93
H+ HM D E E Q F ++++D +++
Sbjct: 2 HHHHHM----------DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI 51
Query: 94 --ILRSPTPSENLEVNY---RSSPAST----------------KDELQVQDDDRSSPPNI 132
I+ S + S ++ + S +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 133 ----KSRSLSTYPVLFPHPVM-LEAMYRARDKVPRL-PLP----YSMNSPPG-------- 174
+ R + V + V L+ + R + L P + G
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV---LGSGKTWVAL 168
Query: 175 -----YPGRPAYPF----INSGLLNGHPIQSPTIDLIR-----SQLPPLANSPKQFQESI 220
Y + F +N N SP L Q+ P S +I
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCN-----SPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 221 SNNTGKPKDRYACKFCGKVFPRSANL--------TRHLRTHTGEQPYKCK------YCER 266
+ K + L + CK + +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFNL----SCKILLTTRFKQV 277
Query: 267 SFSISSNLQRHVRNIHNKEKPF----------KC----------------PLCDRCFG-- 298
+ +S+ H+ H+ K P
Sbjct: 278 TDFLSAATTTHISLDHH-SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 299 -----------QQTNLDRHLKKHEAD----GPTIL-----------DDRNGGIPSPSMIH 332
+ N D+ E+ P + IP+ +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTILL-- 392
Query: 333 NRCRPPSGILNDDSYFEEIRSFMGKVSADGNRLVQRVSSLSR--ANYNYYLPH-----QE 385
++ D ++ + N+L + S + + +P +
Sbjct: 393 -------SLIWFDVIKSDVMVVV-------NKLHKY-SLVEKQPKESTISIPSIYLELKV 437
Query: 386 DAENNNNINSK------------KEILSPSEKDNY 408
EN ++ + L P D Y
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Score = 36.8 bits (84), Expect = 0.015
Identities = 33/201 (16%), Positives = 54/201 (26%), Gaps = 61/201 (30%)
Query: 249 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLK 308
H+ TGE Y+ K I + E F D C Q L
Sbjct: 6 HMDFETGEHQYQYK------DI----------LSVFEDAFVDNF-D-CKDVQDMPKSILS 47
Query: 309 KHEADGPTILDDRNGGIPSPSMIHNRCRPPSGILNDDSYFEEIRSFMGKVSADGNRLVQR 368
K E +D I+ + + +VQ+
Sbjct: 48 KEE------IDH--------------------IIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 369 -VSSLSRANYNYYLPHQEDAENNNNINSKKEILSPS-EKDNYSS-RS---STSSLGSTHA 422
V + R NY + + + I K E PS Y R + + + + +
Sbjct: 82 FVEEVLRINYKFLM---------SPI--KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 423 VPHPPRTKDVPESTREKTPDP 443
V + ++ E P
Sbjct: 131 VSRLQPYLKLRQALLELRPAK 151
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 36.4 bits (84), Expect = 6e-04
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 230 RYACKFCGKVFPRSANLTRHLRTHTGEQPYK 260
++AC C K F RS +L++H+ H +
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGEER 32
Score = 29.5 bits (66), Expect = 0.14
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 288 FKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
F CP C + F + +L +H+ HE G
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEE 31
Score = 25.3 bits (55), Expect = 5.4
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 259 YKCKYCERSFSISSNLQRHVRNIHNKEKPFK 289
+ C C + F S +L +H+ +H +
Sbjct: 3 FACPECPKRFMRSDHLSKHIT-LHELLGEER 32
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 37.9 bits (87), Expect = 6e-04
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 207 PPLANSPKQFQESISNNTGKPKDRYACKFCGKVFPRS-ANLTRHLRTHTGEQPYKCKYCE 265
+ +Q+ I K +C C V ++ L +H+ ++ + C +C
Sbjct: 16 YAAGSLEEQWYLEI-----VDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCG 69
Query: 266 RSFSISSNLQRHVRNIHNKEKPFK 289
+ + ++ HV HN
Sbjct: 70 KQLRSLAGMKYHVMANHNSLPSGP 93
Score = 29.5 bits (65), Expect = 0.72
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 259 YKCKYCER-SFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGPT 316
C C+ L++H+ N K++ F C C + + H+ + P+
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENC--KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 36.0 bits (83), Expect = 7e-04
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKK 309
K + C LC+R F ++ L RH +K
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQK 24
Score = 33.3 bits (76), Expect = 0.007
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHN 283
+ Y C C R+F+ L RH + IH+
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
Score = 26.7 bits (59), Expect = 1.3
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 231 YACKFCGKVFPRSANLTRHLRT-HTG 255
YAC C + F R L RH + H+G
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSG 28
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 41.0 bits (95), Expect = 7e-04
Identities = 25/213 (11%), Positives = 48/213 (22%), Gaps = 16/213 (7%)
Query: 43 TRSHNGPHMSPAGK--PPSSPDSERHEEQPLDLRVDHKKVFLSRNMEDENRNLILRSPTP 100
R G S S + ++ ++K + NR P
Sbjct: 5 PRKTKGKSSGKGNDSTERSDDGSSQLRDKQ-----NNKAGPATTEPGTSNREQYRARPGI 59
Query: 101 SENLEVNYRSSPASTKDELQVQDDDRSSPPNIKSRSLSTYPVLFPHPVMLEAMYRARDKV 160
+ + ++ D ++ + S +A + K
Sbjct: 60 ASVQRATESAELPMKNNDEGTPDKKGNTRGD-LVNEHSEAKDEADEATQKQAKDTDKSKA 118
Query: 161 PRLPLPYSMNSPPGYPGRPAYPFINSGLLNGHPIQSPTIDLIRSQLPPLANSPKQFQESI 220
+ N G N P+ + ++ S
Sbjct: 119 Q--VTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRI-----AEATSAIVSKHP-ARVG 170
Query: 221 SNNTGKPKDRYACKFCGKVFPRSANLTRHLRTH 253
T Y C C V +L H+ +H
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.9 bits (74), Expect = 0.25
Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 3/87 (3%)
Query: 196 SPTIDLIRSQLPPLANSPKQFQESISNNTG---KPKDRYACKFCGKVFPRSANLTRHLRT 252
+ S + ++ N G KP + + + T
Sbjct: 115 KSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPT 174
Query: 253 HTGEQPYKCKYCERSFSISSNLQRHVR 279
+ Y+C C +L HV
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVA 201
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 36.0 bits (82), Expect = 7e-04
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
KP+KCP C + NL+ HL+KH +
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 32.5 bits (73), Expect = 0.016
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 221 SNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQ 257
S ++GKP Y C C ANL HLR HTGE+
Sbjct: 3 SGSSGKP---YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 28.6 bits (63), Expect = 0.29
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+ +PYKC C + +I +NL H+R H EK
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRK-HTGEK 36
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 35.6 bits (82), Expect = 8e-04
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 230 RYACKFCGKVFPRSANLTRHLRTHTGEQ 257
++AC C K F RS +LT H+ H ++
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
Score = 29.9 bits (67), Expect = 0.100
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 288 FKCPLCDRCFGQQTNLDRHLKKHEAD 313
F CP C + F + +L H+ HE
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENK 28
Score = 25.2 bits (55), Expect = 5.3
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 259 YKCKYCERSFSISSNLQRHVRNIHNKEK 286
+ C C + F S +L H+ +H +K
Sbjct: 3 FACPECPKRFMRSDHLTLHIL-LHENKK 29
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 35.3 bits (80), Expect = 0.002
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 282 HNKEKPFKCPLCDRCFGQQTNLDRHLKKHE 311
+ EKP+ CP+C F ++ + H++ H+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 29.9 bits (66), Expect = 0.14
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 253 HTGEQPYKCKYCERSFSISSNLQRHVR 279
+GE+PY C C F + HVR
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVR 31
Score = 28.3 bits (62), Expect = 0.60
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTG 255
Y+C CG F R ++ H+R+H G
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDG 35
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 34.9 bits (79), Expect = 0.002
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 221 SNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGE 256
S ++G K C+ CGK+F S+ L H H GE
Sbjct: 3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 34.0 bits (77), Expect = 0.003
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 233 CKFCGKVFPRSANLTRHLRTHTGEQ 257
C CGK F ++++L H+R HTGE+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 37.0 bits (85), Expect = 0.005
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 233 CKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPL 292
C C + F + ++ H+ + C C S + + IH++ P
Sbjct: 113 CPQCQRPFQKF-HINIHILKDCPRRQVSCDNCAASMA------FEDKEIHDQNCPLALEH 165
Query: 293 CDRC 296
Sbjct: 166 HHHH 169
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 32.9 bits (74), Expect = 0.009
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+ Y+C+YCE + SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 33.3 bits (75), Expect = 0.009
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 252 THTGEQPYKCKYCERSFSISSNLQRHVRNIHNK 284
+ E+ +KC CE++FS S L +H R IH +
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHER-IHTR 37
Score = 32.5 bits (73), Expect = 0.021
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 221 SNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHT 254
S ++G+ + + C C K F S LT+H R HT
Sbjct: 3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 27.9 bits (61), Expect = 0.78
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 282 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
KEK FKC C++ F L +H + H
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 33.0 bits (75), Expect = 0.025
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 243 SANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTN 302
S+ + H T + C++C+ SI L+ H + + C C R +
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLELSI-LKLKEHED--YCGARTELCGNCGR-NVLVKD 57
Query: 303 LDRHLKKHEADG 314
L H + +G
Sbjct: 58 LKTHPEVCGREG 69
Score = 30.7 bits (69), Expect = 0.13
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 227 PKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
P C+ C L H + G + C C R+ + +L+ H +
Sbjct: 14 PLRLAVCQHCDLELSIL-KLKEHE-DYCGARTELCGNCGRNV-LVKDLKTHPEVCGREGS 70
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 31.1 bits (70), Expect = 0.040
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 285 EKPFKC--PLCDRCFGQQTNLDRHLKKHEADG 314
++P+ C P CD+ F + +L RH K H+
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
Score = 29.2 bits (65), Expect = 0.22
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 231 YACKF--CGKVFPRSANLTRHLRTHT 254
Y+C C K F R+ +L RH ++H
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 26.1 bits (57), Expect = 2.8
Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 256 EQPYKCKY--CERSFSISSNLQRHVRNIHNK 284
++PY C + C+++F + +L RH + H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRH-KKSHQE 30
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 30.9 bits (69), Expect = 0.042
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 259 YKCKYCERSFSISSNLQRHVRNIHN 283
YKC CERSF S L RH R +H
Sbjct: 2 YKCGLCERSFVEKSALSRHQR-VHK 25
Score = 28.6 bits (63), Expect = 0.27
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 288 FKCPLCDRCFGQQTNLDRHLKKHE 311
+KC LC+R F +++ L RH + H+
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
Score = 25.5 bits (55), Expect = 4.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 231 YACKFCGKVFPRSANLTRHLRTH 253
Y C C + F + L+RH R H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 30.9 bits (70), Expect = 0.047
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 259 YKCKYCERSFSISSNLQRHVRNIHNKEK 286
Y C +C+R F + L H N+H +++
Sbjct: 7 YTCSFCKREFRSAQALGGH-MNVHRRDR 33
Score = 28.2 bits (63), Expect = 0.55
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 227 PKDRYACKFCGKVFPRSANLTRHLRTH 253
P Y C FC + F + L H+ H
Sbjct: 3 PPRSYTCSFCKREFRSAQALGGHMNVH 29
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 32.2 bits (73), Expect = 0.049
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 236 CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 280
C R +L HL+ ++ KC++C FS + H
Sbjct: 23 CPMKLSRR-DLPAHLQHDCPKRRLKCEFCGCDFS-GEAYESHEGM 65
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 33.3 bits (75), Expect = 0.12
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 233 CKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVR 279
+ K + T H GE+ + + E+ +L+ +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Score = 32.1 bits (72), Expect = 0.29
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 232 ACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCP 291
A + +++ R+ R +R + + + + S H RN+ EK +
Sbjct: 157 AFQHSERIYFRA---CRDIRPGEWLRVWYSEDYMKRLHSMSQETIH-RNLARGEKRLQRE 212
Query: 292 LCDRCFGQQTNLDRHLKKH 310
++ +L +
Sbjct: 213 KSEQVLDNPEDLRGPIHLS 231
Score = 30.2 bits (67), Expect = 1.0
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 217 QESISNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQ 257
QE+I N + + R + +V +L + Q
Sbjct: 195 QETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (67), Expect = 0.13
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 221 SNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQ 257
S ++G + + C+ CG++F + +L H H G++
Sbjct: 3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 25.2 bits (54), Expect = 8.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 283 NKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
++EK +C C F Q +L H H
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLH 35
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.0 bits (64), Expect = 0.20
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTG 255
Y+C CGK F + H R HTG
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.9 bits (56), Expect = 2.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 257 QPYKCKYCERSFSISSNLQRHVR 279
+PY C C + FS+ ++ H R
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYR 24
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 28.9 bits (64), Expect = 0.23
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 231 YACKFCGKVFPRSANLTRHLRT 252
+AC C K F RS L++H++T
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 31.6 bits (71), Expect = 0.37
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 272 SNLQRHVRNIHNKEKPFKCPLCDRCFGQQ-TNLDRHLKKH 310
SNL ++ KC C FG+ T L HL++
Sbjct: 154 SNLPTRGTLTSLFQEDLKCWRCGETFGRHFTKLKAHLQEE 193
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 30.3 bits (67), Expect = 0.47
Identities = 20/110 (18%), Positives = 29/110 (26%), Gaps = 7/110 (6%)
Query: 207 PPLANSPKQFQESISNNTGKPKDRYACKFCGKVFPRSANLTRHL--RTHTG--EQPYKCK 262
L I N+ D CK C V + H R H +
Sbjct: 10 LDLPVGKDAVNSLIRENSHIFSDTQ-CKVCSAVLISESQKLAHYQSRKHANKVRRYMAIN 68
Query: 263 YCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHL--KKH 310
E S +++ CP+C+ F + H K H
Sbjct: 69 QGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAESHYIGKTH 118
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 31.9 bits (72), Expect = 0.52
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 22/62 (35%)
Query: 250 LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH-NKEKPFK--CPLCDRCFGQQTNLDR- 305
LR+H +S V ++ K PFK DRCF ++ D+
Sbjct: 202 LRSHM----------------TSGWFLTVSDLMNKKPLPFKLFSI--DRCFRREQKEDKS 243
Query: 306 HL 307
HL
Sbjct: 244 HL 245
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 0.58
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 313
KPFKC LC+ ++NL H+ +H +
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
Score = 26.0 bits (56), Expect = 3.4
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 286
+P+KC CE + SNL+ H+ N H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHM-NRHSTEK 36
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 27.4 bits (60), Expect = 0.83
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 261 CKYCERSFSISSNLQRHVRNIHN 283
C++C++ +S NL +H+R+ H+
Sbjct: 12 CRFCKKKYSDVKNLIKHIRDAHD 34
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 27.5 bits (60), Expect = 0.85
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 254 TGEQPYKCKYCERSFSISSNLQRHVRNIH 282
+G Y C C + F S L+ H+R +H
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVH 31
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 27.4 bits (60), Expect = 0.92
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 231 YACKFCGKVFPRSANLTRHLRTH 253
Y C+ CGK F +S+ L H+R H
Sbjct: 3 YVCERCGKRFVQSSQLANHIRHH 25
Score = 25.0 bits (54), Expect = 5.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 257 QPYKCKYCERSFSISSNLQRHVRN 280
+PY C+ C + F SS L H+R+
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRH 24
Score = 24.3 bits (52), Expect = 9.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 286 KPFKCPLCDRCFGQQTNLDRHLKKHE 311
KP+ C C + F Q + L H++ H+
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHHD 26
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus
acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Length = 168
Score = 30.1 bits (68), Expect = 0.92
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 246 LTRHLRTHTGEQPYKCKYCERSFSI 270
+ +C+YCE
Sbjct: 131 IPTFKTLTEKPLKMRCEYCETIIDE 155
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 31.1 bits (70), Expect = 0.92
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 22/62 (35%)
Query: 250 LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH-NKEKPFK--CPLCDRCFGQQTNLDR- 305
LR+H +S V ++ K PFK DRCF ++ D+
Sbjct: 202 LRSHM----------------TSGWFLTVSDLMNKKPLPFKLFSI--DRCFRREQKEDKS 243
Query: 306 HL 307
HL
Sbjct: 244 HL 245
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 28.1 bits (62), Expect = 0.93
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 259 YKCKY--CERSFSISSNLQRHVRNIH------NKEKPFKC--PLCDRCFGQQTNLDRHLK 308
KCK+ C S S +LQRH+ H + +P C CD ++ H+
Sbjct: 2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHIN 61
Query: 309 KH 310
Sbjct: 62 AQ 63
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.1 bits (59), Expect = 1.1
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 223 NTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGE 256
++G + C CGK F L H HT +
Sbjct: 2 SSGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 27.3 bits (60), Expect = 1.1
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 283 NKEKPFKCPL--CDRCFGQQTNLDRHLKKHE 311
+ +KPF C C + F + +L H KHE
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 30.3 bits (68), Expect = 1.3
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 22/62 (35%)
Query: 250 LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH-NKEKPFK--CPLCDRCFGQQTNLDR- 305
LR+H +S V ++ K PFK DRCF ++ D+
Sbjct: 202 LRSHM----------------TSGWFLTVSDLMNKKPLPFKLFSI--DRCFRREQKEDKS 243
Query: 306 HL 307
HL
Sbjct: 244 HL 245
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 28.9 bits (64), Expect = 1.3
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 199 IDLIRSQL-PPLANSPKQFQESISNNTGKPKDRYACKFCGKVFPRSANLTRHLRT 252
+D I +L P + P+ + + + C C + F S NL H R+
Sbjct: 18 LDEIHRELRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRS 72
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.2 bits (59), Expect = 1.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 221 SNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGE 256
S ++G + RY C C F +L +H +TH +
Sbjct: 3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAK 38
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 27.1 bits (59), Expect = 1.5
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 285 EKPFKCPLCDRCFGQQ-TNLDRHLKKHEA 312
+ KCP CD F + ++L RH+ HE
Sbjct: 7 GRAMKCPYCDFYFMKNGSDLQRHIWAHEG 35
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 26.5 bits (58), Expect = 1.7
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 231 YACKF--CGKVFPRSANLTRHLRTHTG 255
Y C F CG+ F L RH + HTG
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHTG 29
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 29.8 bits (66), Expect = 1.8
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 279 RNIHNKEKPFKCPLCDRCFGQQTNLDRHL--KKH 310
++ ++ K CP C R F + + HL K H
Sbjct: 284 GSLRSEAKGIYCPFCSRWFKTSSVFESHLVGKIH 317
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 29.6 bits (67), Expect = 1.8
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 266 RSFSISSNLQRHVRNIH 282
+ + + LQR R+ H
Sbjct: 347 TALANGTPLQRFWRDAH 363
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 29.7 bits (67), Expect = 1.9
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 266 RSFSISSNLQRHVRNIH 282
+ + +QR R+ H
Sbjct: 362 GALHYKTPMQRFWRDAH 378
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 66
Score = 27.2 bits (60), Expect = 2.0
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 258 PYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPL-CDRCFGQQTNLDRHLKKH 310
C YC + F +Q H P CP C + +L HLK
Sbjct: 10 TQPCTYCTKEFVF-DTIQSHQYQC--PRLPVACPNQCGVGTVAREDLPGHLKDS 60
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 30.0 bits (67), Expect = 2.1
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 22/62 (35%)
Query: 250 LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH-NKEKPFK--CPLCDRCFGQQTNLDR- 305
LR+H +S V ++ K PFK DRCF ++ D+
Sbjct: 202 LRSHM----------------TSGWFLTVSDLMNKKPLPFKLFSI--DRCFRREQKEDKS 243
Query: 306 HL 307
HL
Sbjct: 244 HL 245
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.8 bits (66), Expect = 2.3
Identities = 24/144 (16%), Positives = 40/144 (27%), Gaps = 8/144 (5%)
Query: 109 RSSPASTKDELQVQDDDRSSPPNIKSRSLSTYPVLFPHPVMLEAMYRARDKVPRLPLPYS 168
R S + + D P + S P+ +A + V P +
Sbjct: 3 RRSARKAQSAIASPADTNVVPAKDAPTTNSPPSTTSPNQAAADANQQQAGIVSSQSGPNA 62
Query: 169 MNSPPGYPGRPAYPFINSGLLNGHPIQSPTIDLIRSQLPPLANSPKQFQESISNNTGKPK 228
+ P+ N G + P + + P S Q +
Sbjct: 63 VGD-----SAPSSSVNNDGDIITRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPS-- 115
Query: 229 DRYACKFCGKVFPRSANLTRHLRT 252
Y C C F + L+ HLR+
Sbjct: 116 -SYVCNVCNARFSTMSALSEHLRS 138
>2air_B Aspartate carbamoyltransferase regulatory chain; aspartate
transcarbamylase, alanosine, carbamyl phosphate, T
transferase; HET: AL0; 2.00A {Escherichia coli} SCOP:
d.58.2.1 g.41.7.1 PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G*
1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B*
1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B
1tug_B* 1xjw_B* ...
Length = 153
Score = 28.5 bits (64), Expect = 2.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 249 HLRTHTGEQPYKCKYCERSFSI 270
+R + KCKYCE+ FS
Sbjct: 126 AVRKRANDIALKCKYCEKEFSH 147
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase,
psychrophilic, cold adaptation, alloste holoenzyme;
2.85A {Moritella profunda}
Length = 153
Score = 28.1 bits (63), Expect = 3.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 249 HLRTHTGEQPYKCKYCERSFSI 270
++ G KCKYCE++FS
Sbjct: 125 SIKKTKGNIGLKCKYCEKTFSK 146
>3p24_A BFT-3; metzincins, metalloendopeptidase, hydrolase; HET: PG4; 1.80A
{Bacteroides fragilis}
Length = 397
Score = 28.4 bits (62), Expect = 4.7
Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 21/167 (12%)
Query: 251 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 310
R ++ ++C Y R+ S N+ +K P CD D
Sbjct: 147 RAINEKEAFECIYDSRTRSAGKYPVSVKINVDKAKKILNLPECDYIN------DYIKTPQ 200
Query: 311 EADGPTILDDRNGGIPSPSMIHNRCRPPSGILNDDSYFEEIRSFMGKVSADGNRLVQRVS 370
G I + + +PS L ++ + +VSA V
Sbjct: 201 VPHG--ITESQTRAVPSEPKTVYVI-----CLRENGS----TVYPNEVSAQMQDAANSVY 249
Query: 371 SLSRANYN----YYLPHQEDAENNNNINSKKEILSPSEKDNYSSRSS 413
++ + L E A + N + + + S K N +
Sbjct: 250 AVHGLKRYVNLHFVLYTTEYACPSGNADEGLDGFTASLKANPKAEGY 296
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 28.4 bits (63), Expect = 4.8
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 231 YACKFCGKVFPRSANLTRHLRTHTGEQ-PYKCKYCERSFSI 270
Y F + F R+ + T P Y + S
Sbjct: 37 YIDDFTLQYFGSKKQYERYRKKCTLRHPPGNEIYRDDYVSF 77
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 28.3 bits (63), Expect = 5.4
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 247 TRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQT 301
T LR P + + S S+ LQR + + +KP + FG +T
Sbjct: 28 TNQLRKAVYMMPTEGD--DSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWET 80
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex,
structural genomics, NPPSFA; HET: ATP; 2.00A
{Methanocaldococcus jannaschii}
Length = 149
Score = 27.4 bits (61), Expect = 6.4
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 259 YKCKYCERSFS 269
+C YCE+ +
Sbjct: 134 IRCYYCEKFLN 144
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 26.4 bits (57), Expect = 7.4
Identities = 15/47 (31%), Positives = 18/47 (38%)
Query: 220 ISNNTGKPKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCER 266
+ N Y CK C +A LT HL H E + K ER
Sbjct: 15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER 61
Score = 26.4 bits (57), Expect = 7.7
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 251 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 285
Y+CK+C+ ++ L H+ NIHN+E
Sbjct: 18 GPRLQNSTYQCKHCDSKLQSTAELTSHL-NIHNEE 51
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 25.7 bits (57), Expect = 9.2
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 261 CKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNL--DRHLKK 309
C+ C L + + + CP+C + Q N+ +RH+
Sbjct: 42 CQAC---------LTANHKKSMLDKGESSCPVCRISY-QPENIRPNRHVAN 82
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.1 bits (54), Expect = 9.4
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 283 NKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGPTILDDRNGGIPSP 328
+++KP+ C +C + + + L H D + P+P
Sbjct: 3 DRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQPPTP 48
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 27.5 bits (62), Expect = 9.4
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 141 PVLFPHPVMLEAMYRARDKVPRLPLPYSMNSPPGYP 176
P LFP EA R + + L YS GY
Sbjct: 44 PELFPKEEAAEAAARILREKGEVALQYS--PTEGYA 77
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental
protein, DNA-binding, nucleus; 2.50A {Caenorhabditis
elegans} PDB: 3c2h_A*
Length = 619
Score = 27.8 bits (61), Expect = 9.6
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 166 PYSMNSPPGYPGRPAYPFINSGL-LNGHPIQSPTIDLIRSQLPPLANSPKQFQESISN-- 222
P + P Y + Y ++ PI SP I + P N P+ F+E I N
Sbjct: 64 PQPVQLPISYYAQLWYNLLDILRRFTFLPIISPYIHQVVQMFCPRENGPQDFRELICNLI 123
Query: 223 NTGKPKDRYACKFCGKVFPRSANLTRHLR 251
+ KD + +VF + ++
Sbjct: 124 SLNWQKDPHMKHCANQVFQIFNCIIMGVK 152
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.9 bits (59), Expect = 9.9
Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 28/83 (33%)
Query: 275 QRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADGPTILDDRNGGIPSPSMIHNR 334
+R R N CP C + + G ++
Sbjct: 9 KRAGRRGPNLNIVLTCP---ECKVYPPKI-------------VERFSEG-----DVVCAL 47
Query: 335 CRPPSGILNDDSYFE---EIRSF 354
C G++ D + E R+F
Sbjct: 48 C----GLVLSDKLVDTRSEWRTF 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.130 0.386
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,435,091
Number of extensions: 367894
Number of successful extensions: 1505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1193
Number of HSP's successfully gapped: 532
Length of query: 447
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 350
Effective length of database: 3,993,456
Effective search space: 1397709600
Effective search space used: 1397709600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.1 bits)