RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5889
(326 letters)
>gnl|CDD|163657 cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-like) enzymes, and
related proteins, metallophosphatase domain. PP1
(protein phosphatase type 1) is a serine/threonine
phosphatase that regulates many cellular processes
including: cell-cycle progression, protein synthesis,
muscle contraction, carbohydrate metabolism,
transcription and neuronal signaling, through its
interaction with at least 180 known targeting proteins.
PP1 occurs in all tissues and regulates many pathways,
ranging from cell-cycle progression to carbohydrate
metabolism. Also included here are the PPKL (PP1 and
kelch-like) enzymes including the PPQ, PPZ1, and PPZ2
fungal phosphatases. These PPKLs have a large
N-terminal kelch repeat in addition to a C-terminal
phosphoesterase domain. The PPP (phosphoprotein
phosphatase) family, to which PP1 belongs, is one of two
known protein phosphatase families specific for serine
and threonine. The PPP family also includes: PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 293
Score = 533 bits (1376), Expect = 0.0
Identities = 197/290 (67%), Positives = 241/290 (83%), Gaps = 2/290 (0%)
Query: 12 LDNVIKKL--SRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTTPLKICGDIHGQ 69
+D++I++L RG RPG+ + L +A+I + +R+IF++QP+ L L PLKICGDIHGQ
Sbjct: 2 IDSIIERLLEVRGSRPGKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQ 61
Query: 70 YNDLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESA 129
Y DLL LF YG PP S YLFLGDYVDRGK S+ETICLL AYKI+YP+N +LLRGNHE A
Sbjct: 62 YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 121
Query: 130 NINKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITN 189
+IN+IYGFY+ECKRRY+IKLWK FTDCFNC+PVAA++D KIFC HGGLSP L S QI
Sbjct: 122 SINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGLSPDLQSMEQIRR 181
Query: 190 LPRPTEVPEEGLLVDLLWSDPEENISGWGHNDRGVSYTFGADMVHEFLKKFNIDLVCRAH 249
+ RPT+VP++GLL DLLWSDP++++ GWG NDRGVS+TFG D+V +FL K ++DL+CRAH
Sbjct: 182 IMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLDLICRAH 241
Query: 250 QVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKP 299
QVVE+GYEFFA ++LVTLFSAPNYCGEFDNAGAMM VDE L CSF I+KP
Sbjct: 242 QVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 291
>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase;
Provisional.
Length = 320
Score = 437 bits (1124), Expect = e-155
Identities = 190/293 (64%), Positives = 240/293 (81%), Gaps = 2/293 (0%)
Query: 12 LDNVIKKL--SRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTTPLKICGDIHGQ 69
+DN+I++L RG +PG+ +NL +A++ + ARDIF++QP+ L L PLKICGD+HGQ
Sbjct: 11 VDNIIERLLSVRGSKPGKNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQ 70
Query: 70 YNDLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESA 129
Y DLL LF YG PP S YLFLGDYVDRGK S+ETICLL AYKI+YP+N +LLRGNHE A
Sbjct: 71 YFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 130
Query: 130 NINKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITN 189
+IN+IYGFY+ECKRRY IKLWK FTDCFNC+PVAA++D KI C HGGLSP+L++ QI
Sbjct: 131 SINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAALIDEKILCMHGGLSPELSNLEQIRR 190
Query: 190 LPRPTEVPEEGLLVDLLWSDPEENISGWGHNDRGVSYTFGADMVHEFLKKFNIDLVCRAH 249
+ RPT+VP+ GLL DLLWSDP++++ GW N+RGVSY F ++V FLKK +DL+CRAH
Sbjct: 191 IMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFLKKHELDLICRAH 250
Query: 250 QVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKPKKK 302
QVVE+GYEFF+ ++LVTLFSAPNYCGEFDNAG+MM +DE+L CSF I+KP ++
Sbjct: 251 QVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQ 303
>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic
domain. Large family of serine/threonine phosphatases,
that includes PP1, PP2A and PP2B (calcineurin) family
members.
Length = 271
Score = 417 bits (1075), Expect = e-148
Identities = 146/267 (54%), Positives = 199/267 (74%)
Query: 35 DIVIMIRAARDIFMAQPMFLYLTTPLKICGDIHGQYNDLLGLFSYGKPPPTSTYLFLGDY 94
+I+ ++R ++IF +P + ++ P+ +CGDIHGQ++DLL LF PP + Y+FLGDY
Sbjct: 5 EILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDKNGQPPETNYVFLGDY 64
Query: 95 VDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESANINKIYGFYEECKRRYDIKLWKKFT 154
VDRG SIE I LLFA KI YP+ I LLRGNHES ++N+IYGFY+ECKR+Y ++++KF
Sbjct: 65 VDRGPFSIEVILLLFALKILYPNRIVLLRGNHESRSMNEIYGFYDECKRKYGERIYEKFN 124
Query: 155 DCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITNLPRPTEVPEEGLLVDLLWSDPEENI 214
+ F+ +P+AA+++ KI C HGGLSP LT+ I L RP E P++GLL+DLLWSDP++ +
Sbjct: 125 EAFSWLPLAALINGKILCMHGGLSPDLTTLDDIRKLKRPQEPPDDGLLIDLLWSDPDQPV 184
Query: 215 SGWGHNDRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYC 274
+G+G + RG SY FG D V EFLKK N+ L+ RAHQVV++GYEFFAD KLVT+FSAPNYC
Sbjct: 185 NGFGPSIRGASYIFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFADGKLVTIFSAPNYC 244
Query: 275 GEFDNAGAMMIVDENLTCSFHIMKPKK 301
F N A++ VD++L +F KP K
Sbjct: 245 DRFGNKAAVLKVDKDLKLTFEQFKPGK 271
>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1;
Provisional.
Length = 294
Score = 376 bits (966), Expect = e-131
Identities = 161/286 (56%), Positives = 212/286 (74%), Gaps = 2/286 (0%)
Query: 14 NVIKKL--SRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTTPLKICGDIHGQYN 71
+I+K+ +G R R I + + DI ++ R+IFM+QPM L + P+++CGD HGQY
Sbjct: 6 TLIEKMLTVKGNRTQRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYY 65
Query: 72 DLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESANI 131
DLL +F PP S YLFLGDYVDRGKHS+ETI L F YKI YP+N +LLRGNHE A+I
Sbjct: 66 DLLRIFEKCGFPPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASI 125
Query: 132 NKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITNLP 191
NK+YGF+++ KRRY+IKL+K FTD FN MPV V+ KI C HGGLSP LTS + + +
Sbjct: 126 NKMYGFFDDVKRRYNIKLFKAFTDVFNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIE 185
Query: 192 RPTEVPEEGLLVDLLWSDPEENISGWGHNDRGVSYTFGADMVHEFLKKFNIDLVCRAHQV 251
RP +VP+ G+L DLLW+DPE+ + G+ +DRGVSY FG D+V++FL ++DL+ RAHQV
Sbjct: 186 RPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAHQV 245
Query: 252 VEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIM 297
+E GY FFA ++LVT+FSAPNYCGEFDN A+M +D+ L CSF I+
Sbjct: 246 MERGYGFFASRQLVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLII 291
>gnl|CDD|163658 cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phosphoprotein
phosphatases, metallophosphatase domain. PP2A-like
family of phosphoprotein phosphatases (PPP's) including
PP4 and PP6. PP2A (Protein phosphatase 2A) is a
critical regulator of many cellular activities. PP2A
comprises about 1% of total cellular proteins. PP2A,
together with protein phosphatase 1 (PP1), accounts for
more than 90% of all serine/threonine phosphatase
activities in most cells and tissues. The PP2A subunit
in addition to having a catalytic domain homologous to
PP1, has a unique C-terminal tail, containing a motif
that is conserved in the catalytic subunits of all
PP2A-like phosphatases including PP4 and PP6, and has an
important role in PP2A regulation. The PP2A-like family
of phosphatases all share a similar heterotrimeric
architecture, that includes: a 65kDa scaffolding subunit
(A), a 36kDa catalytic subunit (C), and one of 18
regulatory subunits (B). The PPP (phosphoprotein
phosphatase) family, to which PP2A belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 285
Score = 353 bits (907), Expect = e-122
Identities = 137/289 (47%), Positives = 192/289 (66%), Gaps = 8/289 (2%)
Query: 12 LDNVIKKLSRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTTPLKICGDIHGQYN 71
LD I++L + L ++++ + A++I + + + +P+ +CGDIHGQ+
Sbjct: 2 LDKWIEQLKKCE------LLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFY 55
Query: 72 DLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESANI 131
DLL LF G PP + YLFLGDYVDRG +S+ET LL A K+RYPD I LLRGNHES I
Sbjct: 56 DLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQI 115
Query: 132 NKIYGFYEECKRRY-DIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITNL 190
++YGFY+EC R+Y + +WK TD F+ +P+AA++D++IFC HGGLSP + + QI +
Sbjct: 116 TQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIFCVHGGLSPSIDTLDQIRAI 175
Query: 191 PRPTEVPEEGLLVDLLWSDPEENISGWGHNDRGVSYTFGADMVHEFLKKFNIDLVCRAHQ 250
R EVP EG + DLLWSDP++ I GWG + RG Y FG D+V EF + L+CRAHQ
Sbjct: 176 DRFQEVPHEGPMCDLLWSDPDD-IEGWGISPRGAGYLFGQDVVEEFNHNNGLTLICRAHQ 234
Query: 251 VVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKP 299
+V EGY++ D KLVT++SAPNYC N ++M +DE+L SF + +
Sbjct: 235 LVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEA 283
>gnl|CDD|163662 cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 phosphatase and
related proteins, C-terminal metallophosphatase domain.
Bsu1 encodes a nuclear serine-threonine protein
phosphatase found in plants and protozoans. Bsu1 has a
C-terminal phosphatase domain and an N-terminal
Kelch-repeat domain. Bsu1 is preferentially expressed
in elongating plant cells. It modulates the
phosphorylation state of Bes1, a transcriptional
regulator phosphorylated by the glycogen synthase kinase
Bin2, as part of a steroid hormone signal transduction
pathway. The PPP (phosphoprotein phosphatase) family,
to which Bsu1 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP1, PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 311
Score = 289 bits (742), Expect = 2e-97
Identities = 125/283 (44%), Positives = 175/283 (61%), Gaps = 22/283 (7%)
Query: 31 LDQADIVIMIRAARDIFMAQPMFLYLTTPLKICGDIHGQYNDLLGLFSYGKPPPTST--- 87
+ +I+ + AA DIF +PM L L P+KI GDIHGQ+ DL+ LF P T
Sbjct: 21 FNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGD 80
Query: 88 -----YLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESANINKIYGFYEECK 142
YLFLGDYVDRG +S+ETICLL A K++YP+ I+L+RGNHE +IN ++GF EECK
Sbjct: 81 IEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECK 140
Query: 143 RRY------DIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITNLPRP-TE 195
R +W++ F +P+AA+++ KI C HGG+ + S+I +L RP T
Sbjct: 141 ERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTM 200
Query: 196 VPEEGLLVDLLWSDPEEN--ISGWGHNDR-----GVSYTFGADMVHEFLKKFNIDLVCRA 248
E +++DLLWSDP EN + G N G+ FG D VH FL++ ++ ++ RA
Sbjct: 201 EFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDLQMIIRA 260
Query: 249 HQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVDENLT 291
H+ V +G+E FA KL+TLFSA NYCG NAGA++++ +LT
Sbjct: 261 HECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVLGRDLT 303
>gnl|CDD|173488 PTZ00239, PTZ00239, serine/threonine protein phosphatase 2A;
Provisional.
Length = 303
Score = 285 bits (732), Expect = 7e-96
Identities = 120/270 (44%), Positives = 176/270 (65%), Gaps = 3/270 (1%)
Query: 31 LDQADIVIMIRAARDIFMAQPMFLYLTTPLKICGDIHGQYNDLLGLFSYGKPPPTSTYLF 90
L + D+ ++ A++IF+ + + P+ +CGDIHGQ+ DL LF G P + Y+F
Sbjct: 16 LPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNANYIF 75
Query: 91 LGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESANINKIYGFYEECKRRY-DIKL 149
+GD+VDRG +S+ET+ L K++YP NI LLRGNHES ++YGFYEE R+Y +
Sbjct: 76 IGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNP 135
Query: 150 WKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITNLPRPTEVPEEGLLVDLLWSD 209
W+ F D F+C+P+AA+++ +I C HGGLSP + + QI + R E+P EG DL+WSD
Sbjct: 136 WRLFMDVFDCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRKIEIPHEGPFCDLMWSD 195
Query: 210 PEENISGWGHNDRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEF-FADKKLVTLF 268
PEE + W N RG Y FGA + EF + ++ L+CRAHQ+V EGY++ F D+ LVT++
Sbjct: 196 PEE-VEYWAVNSRGAGYLFGAKVTKEFCRLNDLTLICRAHQLVMEGYKYWFPDQNLVTVW 254
Query: 269 SAPNYCGEFDNAGAMMIVDENLTCSFHIMK 298
SAPNYC N +++ +DENL ++ K
Sbjct: 255 SAPNYCYRCGNIASILCLDENLQQTWKTFK 284
>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain.
Serine/threonine protein phosphatase-5 (PP5) is a member
of the PPP gene family of protein phosphatases that is
highly conserved among eukaryotes and widely expressed
in mammalian tissues. PP5 has a C-terminal phosphatase
domain and an extended N-terminal TPR (tetratricopeptide
repeat) domain containing three TPR motifs. The PPP
(phosphoprotein phosphatase) family, to which PP5
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 316
Score = 267 bits (686), Expect = 1e-88
Identities = 101/257 (39%), Positives = 159/257 (61%), Gaps = 7/257 (2%)
Query: 39 MIRAARDIFMAQPMFLYLTTP----LKICGDIHGQYNDLLGLFS-YGKPPPTSTYLFLGD 93
++ +++ P + +T P + +CGD HGQ+ DLL +F G P T+ YLF GD
Sbjct: 37 ILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGD 96
Query: 94 YVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESANINKIYGFYEECKRRYDIKLWKKF 153
+VDRG S+E I LFA+K+ YP++ +L RGNHE+ N+NK+YGF E K +Y+ +++ F
Sbjct: 97 FVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLF 156
Query: 154 TDCFNCMPVAAVVDHKIFCCHGGL-SPQLTSFSQITNLPRPTEVPEEGLLVDLLWSDPEE 212
++ FN +P+A +++ K+ HGGL S + I + R + P+ GL+ +LLWSDP+
Sbjct: 157 SEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQP 216
Query: 213 NISGWGHNDRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPN 272
G + RGV FG D+ FL++ N++ + R+H+V +EGYE D K +T+FSAPN
Sbjct: 217 Q-PGRSPSKRGVGCQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPN 275
Query: 273 YCGEFDNAGAMMIVDEN 289
YC + N GA + + +
Sbjct: 276 YCDQMGNKGAFIRITGS 292
>gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain. PP2B
(calcineurin) is a unique serine/threonine protein
phosphatase in its regulation by a second messenger
(calcium and calmodulin). PP2B is involved in many
biological processes including immune responses, the
second messenger cAMP pathway, sodium/potassium ion
transport in the nephron, cell cycle progression in
lower eukaryotes, cardiac hypertrophy, and memory
formation. PP2B is highly conserved from yeast to
humans, but is absent from plants. PP2B is a
heterodimer consisting of a catalytic subunit (CnA) and
a regulatory subunit (CnB); CnB contains four Ca2+
binding motifs referred to as EF hands. The PPP
(phosphoprotein phosphatase) family, to which PP2B
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP4, PP5, PP6, PP7,
Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 305
Score = 265 bits (679), Expect = 8e-88
Identities = 111/282 (39%), Positives = 163/282 (57%), Gaps = 16/282 (5%)
Query: 24 RPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTTPLKICGDIHGQYNDLLGLFSYGKPP 83
R GR L + D + +I +I +P L + P+ +CGDIHGQ+ DLL LF G P
Sbjct: 12 REGR---LSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSP 68
Query: 84 PTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESANINKIYGFYEECKR 143
+ YLFLGDYVDRG SIE + L+A KI YP ++LLRGNHE ++ + + F +ECK
Sbjct: 69 ANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKI 128
Query: 144 RYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITNLPRPTEVPEEGLLV 203
+Y +++ + F+C+P+AA+++ + C HGGLSP+L + I L R E P G +
Sbjct: 129 KYSERVYDACMEAFDCLPLAALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFGPMC 188
Query: 204 DLLWSDPEENISG------WGHND-RGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGY 256
DLLWSDP E+ + HN RG SY + V EFL+K N+ + RAH+ + GY
Sbjct: 189 DLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKNNLLSIIRAHEAQDAGY 248
Query: 257 EFFADKK------LVTLFSAPNYCGEFDNAGAMMIVDENLTC 292
+ + L+T+FSAPNY ++N A++ + N+
Sbjct: 249 RMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMN 290
>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. The PPP (phosphoprotein phosphatase) family is
one of two known protein phosphatase families specific
for serine and threonine. This family includes: PP1,
PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 225
Score = 246 bits (629), Expect = 2e-81
Identities = 106/235 (45%), Positives = 134/235 (57%), Gaps = 21/235 (8%)
Query: 62 ICGDIHGQYNDLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYL 121
+ GDIHG +DLL L PP +FLGDYVDRG S+E I LL A KI PDN+ L
Sbjct: 2 VIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVIL 60
Query: 122 LRGNHESANINKIYGFYEE---------CKRRYDIKLWKKFTDCFNCMPVAAVVD-HKIF 171
LRGNHE +N +YGFY+E ++ LW++F D F +P+AA+++ K+
Sbjct: 61 LRGNHEDMLLNFLYGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVL 120
Query: 172 CCHGGLSPQLTSFSQITNLPRPTEVPEEGLLVDLLWSDPEENISGWGHNDRGVSYTFGAD 231
C HGGLSP L QI E PE+ L DLLWSDP E G+G + RG G D
Sbjct: 121 CVHGGLSPGLPLEEQI------KEEPEDQLPEDLLWSDPLELPGGFGSSRRGG----GPD 170
Query: 232 MVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIV 286
V FLKK + L+ R H VEEGYEF D L+T+ S NYCG N A +++
Sbjct: 171 AVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNKLAALVL 225
>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related
proteins, metallophosphatase domain. RdgC (retinal
degeneration C) is a vertebrate serine-threonine protein
phosphatase that is required to prevent light-induced
retinal degeneration. In addition to its catalytic
domain, RdgC has two C-terminal EF hands. Homologs of
RdgC include the human phosphatases protein phosphatase
with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1
transcripts are present at low levels in the retina,
PPEF-2 transcripts and PPEF-2 protein are present at
high levels in photoreceptors. The PPP (phosphoprotein
phosphatase) family, to which RdgC belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 321
Score = 192 bits (489), Expect = 4e-59
Identities = 97/284 (34%), Positives = 149/284 (52%), Gaps = 37/284 (13%)
Query: 37 VIMI-RAARDIFMAQPMFLYLTT----PLKICGDIHGQYNDLLGLF-SYGKPPPTSTYLF 90
V++I R AR + P ++T + ICGD+HG+ +DL +F G P P + Y+F
Sbjct: 25 VLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLPSPENPYVF 84
Query: 91 LGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESANINKIYGFYEECKRRYDI--- 147
GD+VDRGK SIE + +LFA+ + YP+ ++L RGNHE +N YGF +E +Y +
Sbjct: 85 NGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGK 144
Query: 148 KLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITNLPR---------PTEVPE 198
K+ + D F+ +P+A ++D+KI HGG+S T + + R P
Sbjct: 145 KILRLLEDVFSWLPLATIIDNKILVVHGGISDS-TDLDLLDKIDRHKYVSVLRPPLRKGM 203
Query: 199 EGL------------------LVDLLWSDPEENISGWGHNDRGVSYTFGADMVHEFLKKF 240
E L ++D+LWSDP+ + RG FG D+ + L+K
Sbjct: 204 EELTGEEEDPSEPLDKTEWRQILDILWSDPKAQKGCKPNTFRGGGCYFGPDVTSKVLQKH 263
Query: 241 NIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMM 284
+ L+ R+H+ EGYEF + K++T+FSA NY E N GA +
Sbjct: 264 GLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRGAYI 307
>gnl|CDD|163661 cd07418, MPP_PP7, PP7, metallophosphatase domain. PP7 is a plant
phosphoprotein phosphatase that is highly expressed in a
subset of stomata and thought to play an important role
in sensory signaling. PP7 acts as a positive regulator
of signaling downstream of cryptochrome blue light
photoreceptors. PP7 also controls amplification of
phytochrome signaling, and interacts with
nucleotidediphosphate kinase 2 (NDPK2), a positive
regulator of phytochrome signalling. In addition, PP7
interacts with heat shock transcription factor HSF and
up-regulates protective heat shock proteins. PP7 may
also play a role in salicylic acid-dependent defense
signaling. The PPP (phosphoprotein phosphatase) family,
to which PP7 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP2A, PP2B (calcineurin),
PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 377
Score = 159 bits (405), Expect = 4e-46
Identities = 99/335 (29%), Positives = 155/335 (46%), Gaps = 66/335 (19%)
Query: 1 MASHGAINQESLDNVIKKL---SRGVRP---GRMINLDQADIVIMIRAARDIFMAQPMFL 54
GA+ E + ++ SR + P ++ ++ D +++ A I +P +
Sbjct: 1 WPDGGALTNEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVL--TAHKILHREPNCV 58
Query: 55 YLTTPLKIC-----GDIHGQYNDLLGLFS-YGKPPPTSTYLFLGDYVDRGKHSIETICLL 108
+ +C GD+HGQ +D+L L G P Y+F GDYVDRG +ET LL
Sbjct: 59 RIDV-EDVCEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFLLL 117
Query: 109 FAYKIRYPDNIYLLRGNHESANINKIYGFYEECKRRYDIK---LWKKFTDCFNCMPVAAV 165
++K+ PD +YLLRGNHES +YGF +E +Y K +++K CF +P+A++
Sbjct: 118 LSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCLGCFEGLPLASI 177
Query: 166 VDHKIFCCHGGL---------------------------SPQLTSFSQITNLPRPT-EVP 197
+ +++ HGGL S +L + + R + P
Sbjct: 178 IAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPP 237
Query: 198 EEGLLV---DLLWSDPEENISGWGHND-RGVSYTFGADMVHEFLKKFNIDLVCRAHQ--- 250
EG + D+LWSDP G N RG+ +G D EFL+K N+ L+ R+H+
Sbjct: 238 GEGSNLIPGDVLWSDPSLT-PGLSPNKQRGIGLLWGPDCTEEFLEKNNLKLIIRSHEGPD 296
Query: 251 ---------VVEEGYEFFAD---KKLVTLFSAPNY 273
+ +GY D KL+TLFSAP+Y
Sbjct: 297 AREKRPGLAGMNKGYTVDHDVESGKLITLFSAPDY 331
>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase. This
family includes a diverse range of phosphoesterases,
including protein phosphoserine phosphatases,
nucleotidases, sphingomyelin phosphodiesterases and
2'-3' cAMP phosphodiesterases as well as nucleases such
as bacterial SbcD or yeast MRE11. The most conserved
regions in this superfamily centre around the metal
chelating residues.
Length = 185
Score = 114 bits (285), Expect = 1e-30
Identities = 64/222 (28%), Positives = 88/222 (39%), Gaps = 66/222 (29%)
Query: 59 PLKICGDIHGQYNDLLG---LFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRY 115
+ + GD+HG +DL L P LFLGD VDRG S+E + LLFA K++
Sbjct: 1 RILVIGDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKA 60
Query: 116 PDNIYLLRGNHESANINKIYGFYEECKRR-------------------------YDIKLW 150
P +YL+RGNH+ + N GFY EC +W
Sbjct: 61 PGPVYLVRGNHDFDSGNSELGFYLECAGLPYVLGNGDVSNGTVEIIGLSSLYGKGGGLVW 120
Query: 151 KKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITNLPRPTEVPEEGLLVDLLWSDP 210
++F + + + +AA+VD KI HG LSP L S I
Sbjct: 121 EEFLELLDLLLLAALVDGKILLVHGPLSPSLDSGDDI----------------------- 157
Query: 211 EENISGWGHNDRGVSYTFGADMVHEFLKKFNIDLVCRAHQVV 252
Y FG + + + LK +DLV R H V
Sbjct: 158 ---------------YLFGEEALEDLLKDNGVDLVLRGHTHV 184
>gnl|CDD|223712 COG0639, ApaH, Diadenosine tetraphosphatase and related
serine/threonine protein phosphatases [Signal
transduction mechanisms].
Length = 155
Score = 103 bits (257), Expect = 7e-27
Identities = 56/156 (35%), Positives = 72/156 (46%), Gaps = 10/156 (6%)
Query: 129 ANINKIYGFYEECKRRYDIKL-WKK---FTDCFNCMPVAAVV-DHKIFCCHGGLSPQLTS 183
+ +YGFY+E R+Y +L W + + F+ +P+AAV K+ C HGGLSP L
Sbjct: 1 MLLTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDR 60
Query: 184 F-SQITNLPRPT--EVPEEGLLVDLLWSDPEENIS-GWGHNDRGVSYTFGADMVHEFLKK 239
I L R EVP G DLLWSDP+ W RGV G F
Sbjct: 61 LLDIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPRGVPRDGGDVTAV-FGIV 119
Query: 240 FNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCG 275
L+ RAH + + L+T FSAPNYC
Sbjct: 120 HTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYCY 155
>gnl|CDD|107154 PHA02239, PHA02239, putative protein phosphatase.
Length = 235
Score = 50.0 bits (119), Expect = 4e-07
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 65 DIHGQYNDLLGLFS--YGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLL 122
DIHG+Y LL + + P T +FLGDYVDRGK S + + +F DN+ L
Sbjct: 8 DIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSN-DDNVVTL 66
Query: 123 RGNHESANINKIYGFYEECKRR--YDIKLWKKF 153
GNH+ ++ Y E R YDI+ ++
Sbjct: 67 LGNHD----DEFYNIMENVDRLSIYDIEWLSRY 95
>gnl|CDD|163656 cd07413, MPP_PA3087, Pseudomonas aeruginosa PA3087 and related
proteins, metallophosphatase domain. PA3087 is an
uncharacterized protein from Pseudomonas aeruginosa with
a metallophosphatase domain that belongs to the
phosphoprotein phosphatase (PPP) family. The PPP family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 222
Score = 48.0 bits (115), Expect = 1e-06
Identities = 29/130 (22%), Positives = 45/130 (34%), Gaps = 31/130 (23%)
Query: 62 ICGDIHGQYNDLLGLF--------SYGKPPPTSTYLFLGDYVDRGKHSIETI-------- 105
GDIHG L+ L S P +FLGD +DRG E +
Sbjct: 3 FIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVD 62
Query: 106 -----CLL-------FAYKIRYPDNIYLLRGNHESANINKIYGFYEECKRRYDIKLWKKF 153
++ A+ + P LR H N+ + F E+ R + K +
Sbjct: 63 AGHALAVMGNHEFNAIAWHTKDPSGGEWLR-AHSKKNLRQHQAFLEQF--REHSEEHKDW 119
Query: 154 TDCFNCMPVA 163
+ F +P+
Sbjct: 120 LEWFKTLPLF 129
>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain.
PrpA and PrpB are bacterial type I serine/threonine and
tyrosine phosphatases thought to modulate the expression
of proteins that protect the cell upon accumulation of
misfolded proteins in the periplasm. The PPP
(phosphoprotein phosphatase) family, to which PrpA and
PrpB belong, is one of two known protein phosphatase
families specific for serine and threonine. This family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 207
Score = 47.3 bits (113), Expect = 2e-06
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 62 ICGDIHGQYNDLLGLFSYGKPPPTSTYLF-LGDYVDRGKHSIETICLLFAYKIRYPDNIY 120
+ GDIHG Y+ L P L +GD +DRG S+ + LL P +
Sbjct: 5 VVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELL-----LEP-WFH 58
Query: 121 LLRGNHE 127
+RGNHE
Sbjct: 59 AVRGNHE 65
>gnl|CDD|163664 cd07421, MPP_Rhilphs, Rhilph phosphatases, metallophosphatase
domain. Rhilphs (Rhizobiales/ Rhodobacterales/
Rhodospirillaceae-like phosphatases) are a
phylogenetically distinct group of PPP (phosphoprotein
phosphatases), found only in land plants. They are named
for their close relationship to to PPP phosphatases from
alpha-Proteobacteria, including Rhizobiales,
Rhodobacterales and Rhodospirillaceae. The PPP
(phosphoprotein phosphatase) family, to which the
Rhilphs belong, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and
ApA4 hydrolase. The PPP catalytic domain is defined by
three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).
The PPP enzyme family is ancient with members found in
all eukaryotes, and in most bacterial and archeal
genomes. Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 304
Score = 46.7 bits (111), Expect = 6e-06
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 62 IC-GDIHGQYNDLLGLFS--YGKPPP----TSTYLFLGDYVDRGKHSIETICLLFAYKIR 114
IC GDIHG + L L+ P ++ +FLGDY DRG + + I L + +
Sbjct: 5 ICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEK 64
Query: 115 YPDNIYL-LRGNHESA 129
+P ++ L GNH+ A
Sbjct: 65 HPKQRHVFLCGNHDFA 80
>gnl|CDD|163668 cd07425, MPP_Shelphs, Shewanella-like phosphatases,
metallophosphatase domain. This family includes
bacterial, eukaryotic, and archeal proteins orthologous
to the Shewanella cold-active protein-tyrosine
phosphatase, CAPTPase. CAPTPase is an uncharacterized
protein that belongs to the Shelph (Shewanella-like
phosphatase) family of PPP (phosphoprotein
phosphatases). The PPP family is one of two known
protein phosphatase families specific for serine and
threonine. In addition to Shelps, the PPP family also
includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6,
PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase.
The PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 208
Score = 46.1 bits (110), Expect = 6e-06
Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 38/145 (26%)
Query: 64 GDIHGQYNDLLGLF------------SYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAY 111
GD+HG + + G ++ + LGD DRG IE + LL Y
Sbjct: 4 GDLHGDLDAFREILKGAGVIDSNDHWIGG----STHLVQLGDIFDRGPDVIEILWLL--Y 57
Query: 112 KIRYP-----DNIYLLRGNHESANINKIY---------GFYEECKRRYDIKLWKKFTDCF 157
K+ ++ L GNHE N+ + F RR +L+ +
Sbjct: 58 KLEQEAAKAGGKVHFLLGNHELMNLCGDFRYVHPKYFNEFGGLAMRRR--ELFSPGGELG 115
Query: 158 N---CMPVAAVVDHKIFCCHGGLSP 179
PV V+ +F HGGL P
Sbjct: 116 RWLRSKPVIVKVNDTLF-VHGGLGP 139
>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
metallophosphatase domain. Metallophosphatases (MPPs),
also known as metallophosphoesterases,
phosphodiesterases (PDEs), binuclear
metallophosphoesterases, and dimetal-containing
phosphoesterases (DMPs), represent a diverse superfamily
of enzymes with a conserved domain containing an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
This superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 131
Score = 43.8 bits (103), Expect = 1e-05
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 62 ICGDIHGQYNDL--LGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNI 119
+ DIHG L + + L LGD V G E + A + +
Sbjct: 2 VISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPV 61
Query: 120 YLLRGNHE 127
Y++ GNH+
Sbjct: 62 YVVPGNHD 69
>gnl|CDD|163666 cd07423, MPP_PrpE, Bacillus subtilis PrpE and related proteins,
metallophosphatase domain. PrpE (protein phosphatase E)
is a bacterial member of the PPP (phosphoprotein
phosphatase) family of serine/threonine phosphatases and
a key signal transduction pathway component controlling
the expression of spore germination receptors GerA and
GerK in Bacillus subtilis. PrpE is closely related to
ApaH (also known symmetrical Ap(4)A hydrolase and
bis(5'nucleosyl)-tetraphosphatase). PrpE has
specificity for phosphotyrosine only, unlike the
serine/threonine phosphatases to which it is related.
The Bacilli members of this family are single domain
proteins while the other members have N- and C-terminal
domains in addition to this phosphatase domain. The PPP
(phosphoprotein phosphatase) family, to which PrpE
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 234
Score = 44.2 bits (105), Expect = 3e-05
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 59 PLKICGDIHGQYN---DLLGLFSY-------GKPPPTSTYLFLGDYVDRGKHSIETICLL 108
P I GD+HG Y+ +LL Y P +F+GD VDRG S E + L+
Sbjct: 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLV 61
Query: 109 FAYKIRYPDNIYLLRGNHESANINKIYGF 137
+ + GNH+ NK+Y
Sbjct: 62 MSMVAA--GAALCVPGNHD----NKLYRK 84
>gnl|CDD|184187 PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE;
Provisional.
Length = 245
Score = 44.3 bits (105), Expect = 3e-05
Identities = 37/144 (25%), Positives = 55/144 (38%), Gaps = 34/144 (23%)
Query: 62 ICGDIHGQYNDLLGL-------FSYGKP--PPTSTYLFLGDYVDRGKHSIETICLLFAYK 112
I GDIHG Y + L +S G P P F+GD DRG HS+ I ++
Sbjct: 5 IIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMI--EIVWE 62
Query: 113 IRYPDNIYLLRGNHESANINKIYGF------------------YEECKRRYDIKLWKKFT 154
+ Y + GNH NK+Y F YE + +KF
Sbjct: 63 LVEKKAAYYVPGNH----CNKLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFI 118
Query: 155 DCFNCMPVAAVVDH-KIFCCHGGL 177
+ P+ ++D ++ H G+
Sbjct: 119 TLYEQAPLYHILDEGRLVVAHAGI 142
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 40.4 bits (95), Expect = 0.001
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 17/87 (19%)
Query: 56 LTTPLKICGDIHGQYNDL------LG--------LFSYGKPPPTS-TYLFLGDYVDRGKH 100
P I GD+HG ++L LG P +F+GD VDRG
Sbjct: 178 EHGPFDIIGDVHGCRDELETLLEELGYQIERDEGGRPVDVTHPEGRKAVFVGDLVDRGPD 237
Query: 101 SIETICLLFAYKIRYPDNIYLLRGNHE 127
S + L+ + + GNH+
Sbjct: 238 SPGVLRLVMG--MVAAGTALCVPGNHD 262
>gnl|CDD|234673 PRK00166, apaH, diadenosine tetraphosphatase; Reviewed.
Length = 275
Score = 37.8 bits (89), Expect = 0.004
Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 45/141 (31%)
Query: 64 GDIHGQYNDLLGL-----FSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDN 118
GDI G Y++L L F P T +GD V+RG S+E L F + D+
Sbjct: 7 GDIQGCYDELQRLLEKIDFD----PAKDTLWLVGDLVNRGPDSLEV--LRFVKSLG--DS 58
Query: 119 IYLLRGNHE------SANINKIYGFYEECKRRYDIKLWKKFTDCFN------------CM 160
+ GNH+ +A I + ++ D
Sbjct: 59 AVTVLGNHDLHLLAVAAGIKRN--------KKKD-----TLDPILEAPDRDELLDWLRHQ 105
Query: 161 PVAAVV-DHKIFCCHGGLSPQ 180
P+ V + + H G+ PQ
Sbjct: 106 PLLHVDEELGLVMVHAGIPPQ 126
>gnl|CDD|163665 cd07422, MPP_ApaH, Escherichia coli ApaH and related proteins,
metallophosphatase domain. ApaH (also known as
symmetrically cleaving Ap4A hydrolase and
bis(5'nucleosyl)-tetraphosphatase) is a bacterial member
of the PPP (phosphoprotein phosphatase) family of
serine/threonine phosphatases that hydrolyzes the
nucleotide-signaling molecule diadenosine tetraphosphate
(Ap(4)A) into two ADP and also hydrolyzes Ap(5)A,
Gp(4)G, and other extending compounds. Null mutations
in apaH result in high intracellular levels of Ap(4)A
which correlate with multiple phenotypes, including a
decreased expression of catabolite-repressible genes, a
reduction in the expression of flagellar operons, and an
increased sensitivity to UV and heat. Ap4A hydrolase
is important in responding to heat shock and oxidative
stress via regulating the concentration of Ap4A in
bacteria. Ap4A hydrolase is also thought to play a role
in siderophore production, but the mechanism by which
ApaH interacts with siderophore pathways in unknown.
The PPP (phosphoprotein phosphatase) family, to which
ApaH belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and PrpA/PrpB. The
PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 257
Score = 37.1 bits (87), Expect = 0.006
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 64 GDIHGQYNDLLGLFSYGKPPPTSTYL-FLGDYVDRGKHSIETICLLFAYKIRYPDNIYLL 122
GDI G Y++L L P L +GD V+RG S+ET+ + + D+ +
Sbjct: 5 GDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTV 60
Query: 123 RGNHE 127
GNH+
Sbjct: 61 LGNHD 65
>gnl|CDD|236911 PRK11439, pphA, serine/threonine protein phosphatase 1;
Provisional.
Length = 218
Score = 35.5 bits (82), Expect = 0.022
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 62 ICGDIHGQYNDLLG-LFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIY 120
+ GDIHG + L+ L P + +GD +DRG S+ + LL + +R
Sbjct: 21 LVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEHWVR------ 74
Query: 121 LLRGNHE 127
+RGNHE
Sbjct: 75 AVRGNHE 81
>gnl|CDD|182173 PRK09968, PRK09968, serine/threonine-specific protein phosphatase
2; Provisional.
Length = 218
Score = 35.3 bits (81), Expect = 0.029
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 64 GDIHGQYNDLLG-LFSYGKPPPTSTYLFLGDYVDRGKHSIETICLL 108
GDIHG+Y L L P T + +GD +DRG S+ + LL
Sbjct: 21 GDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLL 66
>gnl|CDD|233082 TIGR00668, apaH, bis(5'-nucleosyl)-tetraphosphatase (symmetrical).
Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a
regulatory metabolite of stress conditions. It is
hydrolyzed to two ADP by this enzyme. Alternate names
include diadenosine-tetraphosphatase and Ap4A hydrolase
[Cellular processes, Adaptations to atypical
conditions].
Length = 279
Score = 34.5 bits (79), Expect = 0.064
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 64 GDIHGQYNDLLGLFSYGKPPPTSTYLFL-GDYVDRGKHSIETICLLFAYKIRYPDNIYLL 122
GD+HG Y++L L + P L+L GD V RG S+E L + + D + L+
Sbjct: 7 GDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLE--VLRYVKSL--GDAVRLV 62
Query: 123 RGNHE 127
GNH+
Sbjct: 63 LGNHD 67
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain.
Length = 82
Score = 26.8 bits (60), Expect = 4.0
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 4 HGAINQESLDNVIKKLSRGVRP--------GRMINLDQADIVIMIRAARDI 46
HG ++QE + ++ K + G R ++L D+VI+
Sbjct: 18 HGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSP 68
>gnl|CDD|234807 PRK00648, PRK00648, Maf-like protein; Reviewed.
Length = 191
Score = 28.3 bits (64), Expect = 4.5
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 235 EFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSA 270
E L+ F I VEE Y + D + +TL A
Sbjct: 16 EILEGFRIPFEVVPSPFVEESYPYSLDPEEITLELA 51
>gnl|CDD|163628 cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins,
C-terminal metallophosphatase domain. YkuE is an
uncharacterized Bacillus subtilis protein with a
C-terminal metallophosphatase domain and an N-terminal
twin-arginine (RR) motif. An RR-signal peptide derived
from the Bacillus subtilis YkuE protein can direct
Tat-dependent secretion of agarase in Streptomyces
lividans. This is an indication that YkuE is transported
by the Bacillus subtilis Tat (Twin-arginine
translocation) pathway machinery. YkuE belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 223
Score = 28.0 bits (63), Expect = 5.3
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 89 LFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHE 127
+ GD VD G + + L K++ P +Y + GNH+
Sbjct: 37 VLTGDLVD-GSVDVLELLLELLKKLKAPLGVYAVLGNHD 74
>gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like,
extended (e) SDRs. This subgroup of extended SDR family
domains have the characteristic active site tetrad and a
well-conserved NAD(P)-binding motif. This subgroup is
not well characterized, its members are annotated as
having a variety of putative functions. One
characterized member is Pseudomonas fluorescens MupV a
protein involved in the biosynthesis of Mupirocin, a
polyketide-derived antibiotic. Extended SDRs are
distinct from classical SDRs. In addition to the
Rossmann fold (alpha/beta folding pattern with a central
beta-sheet) core region typical of all SDRs, extended
SDRs have a less conserved C-terminal extension of
approximately 100 amino acids. Extended SDRs are a
diverse collection of proteins, and include isomerases,
epimerases, oxidoreductases, and lyases; they typically
have a TGXXGXXG cofactor binding motif. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold, an NAD(P)(H)-binding region, and a structurally
diverse C-terminal region. Sequence identity between
different SDR enzymes is typically in the 15-30% range;
they catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 293
Score = 28.1 bits (63), Expect = 6.7
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 124 GNHESANINKIYGFYEECKRRYDIKLWK 151
G+ ++ I KI G YE + W
Sbjct: 180 GDSKTGRIEKIDGLYELLNLLAKLGRWL 207
>gnl|CDD|163633 cd07390, MPP_AQ1575, Aquifex aeolicus AQ1575 and related proteins,
metallophosphatase domain. This family includes
bacterial and archeal proteins homologous to AQ1575, an
uncharacterized Aquifex aeolicus protein. AQ1575 may
play an accessory role in DNA repair, based on the close
proximity of its gene to Holliday junction resolvasome
genes. The domain present in members of this family
belongs to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 168
Score = 27.6 bits (62), Expect = 7.0
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 84 PTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESANINKIYGFYEECKR 143
P T LGD+ GK + LL R +L++GNH+S+ K+ F + +
Sbjct: 42 PDDTVYHLGDFSFGGKAG-TELELLS----RLNGRKHLIKGNHDSSLERKLLAFLLKFES 96
Query: 144 RYDIK 148
Sbjct: 97 VLQAV 101
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain. The
Prosite family is restricted to DEAD/H helicases,
whereas this domain family is found in a wide variety
of helicases and helicase related proteins. It may be
that this is not an autonomously folding unit, but an
integral part of the helicase.
Length = 78
Score = 25.9 bits (58), Expect = 7.7
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 4 HGAINQESLDNVIKKLSRGVRP--------GRMINLDQADIVIMIRAARDI 46
HG ++QE + +++ G GR I+L ++VI +
Sbjct: 14 HGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDLPWNP 64
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.435
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,997,790
Number of extensions: 1656596
Number of successful extensions: 1307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1261
Number of HSP's successfully gapped: 42
Length of query: 326
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 229
Effective length of database: 6,635,264
Effective search space: 1519475456
Effective search space used: 1519475456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)