RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5889
(326 letters)
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 542 bits (1400), Expect = 0.0
Identities = 198/297 (66%), Positives = 244/297 (82%), Gaps = 2/297 (0%)
Query: 5 GAINQESLDNVIKKL--SRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTTPLKI 62
G + +LD++I +L +G RPG+ + L + +I + +R+IF++QP+ L L PLKI
Sbjct: 1 GHMGSLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKI 60
Query: 63 CGDIHGQYNDLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLL 122
CGDIHGQY DLL LF YG PP S YLFLGDYVDRGK S+ETICLL AYKI+YP+N +LL
Sbjct: 61 CGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 120
Query: 123 RGNHESANINKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLT 182
RGNHE A+IN+IYGFY+ECKRRY+IKLWK FTDCFNC+P+AA+VD KIFCCHGGLSP L
Sbjct: 121 RGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQ 180
Query: 183 SFSQITNLPRPTEVPEEGLLVDLLWSDPEENISGWGHNDRGVSYTFGADMVHEFLKKFNI 242
S QI + RPT+VP++GLL DLLWSDP++++ GWG NDRGVS+TFGA++V +FL K ++
Sbjct: 181 SMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDL 240
Query: 243 DLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKP 299
DL+CRAHQVVE+GYEFFA ++LVTLFSAPNYCGEFDNAGAMM VDE L CSF I+KP
Sbjct: 241 DLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 297
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 542 bits (1399), Expect = 0.0
Identities = 199/301 (66%), Positives = 245/301 (81%), Gaps = 5/301 (1%)
Query: 1 MASHGAINQESLDNVIKKL--SRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTT 58
M+ +N LD++I +L +G RPG+ + L + +I + +R+IF++QP+ L L
Sbjct: 1 MSDSEKLN---LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEA 57
Query: 59 PLKICGDIHGQYNDLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDN 118
PLKICGDIHGQY DLL LF YG PP S YLFLGDYVDRGK S+ETICLL AYKI+YP+N
Sbjct: 58 PLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN 117
Query: 119 IYLLRGNHESANINKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLS 178
+LLRGNHE A+IN+IYGFY+ECKRRY+IKLWK FTDCFNC+P+AA+VD KIFCCHGGLS
Sbjct: 118 FFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLS 177
Query: 179 PQLTSFSQITNLPRPTEVPEEGLLVDLLWSDPEENISGWGHNDRGVSYTFGADMVHEFLK 238
P L S QI + RPT+VP++GLL DLLWSDP++++ GWG NDRGVS+TFGA++V +FL
Sbjct: 178 PDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLH 237
Query: 239 KFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMK 298
K ++DL+CRAHQVVE+GYEFFA ++LVTLFSAPNYCGEFDNAGAMM VDE L CSF I+K
Sbjct: 238 KHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILK 297
Query: 299 P 299
P
Sbjct: 298 P 298
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 521 bits (1345), Expect = 0.0
Identities = 129/289 (44%), Positives = 180/289 (62%), Gaps = 8/289 (2%)
Query: 12 LDNVIKKLSRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTTPLKICGDIHGQYN 71
LD I++L+ L ++ + + A++I + + P+ +CGD+HGQ++
Sbjct: 10 LDQWIEQLNECK------QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFH 63
Query: 72 DLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESANI 131
DL+ LF G P + YLF+GDYVDRG +S+ET+ LL A K+RY + I +LRGNHES I
Sbjct: 64 DLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQI 123
Query: 132 NKIYGFYEECKRRYD-IKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITNL 190
++YGFY+EC R+Y +WK FTD F+ +P+ A+VD +IFC HGGLSP + + I L
Sbjct: 124 TQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRAL 183
Query: 191 PRPTEVPEEGLLVDLLWSDPEENISGWGHNDRGVSYTFGADMVHEFLKKFNIDLVCRAHQ 250
R EVP EG + DLLWSDP++ GWG + RG YTFG D+ F + LV RAHQ
Sbjct: 184 DRLQEVPHEGPMCDLLWSDPDD-RGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQ 242
Query: 251 VVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKP 299
+V EGY + D+ +VT+FSAPNYC N A+M +D+ L SF P
Sbjct: 243 LVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDP 291
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 474 bits (1221), Expect = e-169
Identities = 104/294 (35%), Positives = 162/294 (55%), Gaps = 19/294 (6%)
Query: 12 LDNVIKKLSRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTTPLKICGDIHGQYN 71
+D + L + R L+++ + +I I + L + P+ +CGDIHGQ+
Sbjct: 30 VDILKAHLMKEGR------LEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFF 83
Query: 72 DLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESANI 131
DL+ LF G P + YLFLGDYVDRG SIE + L+A KI YP ++LLRGNHE ++
Sbjct: 84 DLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHL 143
Query: 132 NKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITNLP 191
+ + F +ECK +Y +++ D F+C+P+AA+++ + C HGGLSP++ + I L
Sbjct: 144 TEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLD 203
Query: 192 RPTEVPEEGLLVDLLWSDPEENISGWGHND-------RGVSYTFGADMVHEFLKKFNIDL 244
R E P G + D+LWSDP E+ + RG SY + V EFL+ N+
Sbjct: 204 RFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS 263
Query: 245 VCRAHQVVEEGYEFFADKK------LVTLFSAPNYCGEFDNAGAMMIVDENLTC 292
+ RAH+ + GY + + L+T+FSAPNY ++N A++ + N+
Sbjct: 264 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMN 317
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 468 bits (1206), Expect = e-168
Identities = 102/302 (33%), Positives = 164/302 (54%), Gaps = 14/302 (4%)
Query: 5 GAINQESLDNVIKKLSRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTT----PL 60
G + + +++ + L + ++ +++ + T +
Sbjct: 9 GKVTISFMKELMQWYKDQKK------LHRKCAYQILVQVKEVLSKLSTLVETTLKETEKI 62
Query: 61 KICGDIHGQYNDLLGLFSY-GKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNI 119
+CGD HGQ+ DLL +F G P T+ Y+F GD+VDRG S+E I LF +K+ YPD+
Sbjct: 63 TVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHF 122
Query: 120 YLLRGNHESANINKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGL-S 178
+LLRGNHE+ N+N+IYGF E K +Y ++++ F++ F +P+A ++ K+ HGGL S
Sbjct: 123 HLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFS 182
Query: 179 PQLTSFSQITNLPRPTEVPEEGLLVDLLWSDPEENISGWGHNDRGVSYTFGADMVHEFLK 238
+ I + R + P+ G + DLLWSDP+ +G + RGVS FG D+ FL+
Sbjct: 183 EDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQP-QNGRSISKRGVSCQFGPDVTKAFLE 241
Query: 239 KFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVD-ENLTCSFHIM 297
+ N+D + R+H+V EGYE + VT+FSAPNYC + N + + + +L FH
Sbjct: 242 ENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQF 301
Query: 298 KP 299
Sbjct: 302 TA 303
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 467 bits (1204), Expect = e-167
Identities = 105/310 (33%), Positives = 163/310 (52%), Gaps = 16/310 (5%)
Query: 7 INQESLDNVIKKLSRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTT------PL 60
++QE + ++ L + L + + +I A +F +P + L +
Sbjct: 12 MSQEFISKMVNDLFL-----KGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTPDVKI 66
Query: 61 KICGDIHGQYNDLLGLFS-YGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNI 119
+CGD HGQ+ D+L LF +GK P TYLF GD+VDRG S E L + KI +P+N
Sbjct: 67 SVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNF 126
Query: 120 YLLRGNHESANINKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGL-S 178
+L RGNHES N+NKIYGF +ECK +Y +++ F F +P+A ++++ HGGL S
Sbjct: 127 FLNRGNHESDNMNKIYGFEDECKYKYSQRIFNMFAQSFESLPLATLINNDYLVMHGGLPS 186
Query: 179 PQLTSFSQITNLPRPTEVPEEGLLVDLLWSDPEENISGWGHNDRGVSYTFGADMVHEFLK 238
+ S N+ R + P +G ++LLW+DP+E +G G + RG+ + FG D+ FL+
Sbjct: 187 DPSATLSDFKNIDRFAQPPRDGAFMELLWADPQE-ANGMGPSQRGLGHAFGPDITDRFLR 245
Query: 239 KFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMK 298
+ + R+H++ G +F KL+T+FSAPNYC N G ++ V
Sbjct: 246 NNKLRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDSQGNLGGVIHVVPGHGILQAGRN 305
Query: 299 P--KKKILEF 306
I F
Sbjct: 306 DDQNLIIETF 315
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 466 bits (1202), Expect = e-164
Identities = 104/298 (34%), Positives = 162/298 (54%), Gaps = 19/298 (6%)
Query: 12 LDNVIKKLSRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTTPLKICGDIHGQYN 71
+D + L + R L+++ + +I I + L + P+ +CGDIHGQ+
Sbjct: 43 VDILKAHLMKEGR------LEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFF 96
Query: 72 DLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESANI 131
DL+ LF G P + YLFLGDYVDRG SIE + L+A KI YP ++LLRGNHE ++
Sbjct: 97 DLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHL 156
Query: 132 NKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITNLP 191
+ + F +ECK +Y +++ D F+C+P+AA+++ + C HGGLSP++ + I L
Sbjct: 157 TEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLD 216
Query: 192 RPTEVPEEGLLVDLLWSDPEENISGWGHND-------RGVSYTFGADMVHEFLKKFNIDL 244
R E P G + D+LWSDP E+ + RG SY + V EFL+ N+
Sbjct: 217 RFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS 276
Query: 245 VCRAHQVVEEGYEFFADKK------LVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHI 296
+ RAH+ + GY + + L+T+FSAPNY ++N A++ + N+
Sbjct: 277 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQF 334
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 461 bits (1188), Expect = e-163
Identities = 102/302 (33%), Positives = 164/302 (54%), Gaps = 14/302 (4%)
Query: 5 GAINQESLDNVIKKLSRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLT----TPL 60
G + + +++ + L + ++ +++ + T +
Sbjct: 162 GKVTISFMKELMQWYKDQKK------LHRKCAYQILVQVKEVLSKLSTLVETTLKETEKI 215
Query: 61 KICGDIHGQYNDLLGLFSY-GKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNI 119
+CGD HGQ+ DLL +F G P T+ Y+F GD+VDRG S+E I LF +K+ YPD+
Sbjct: 216 TVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHF 275
Query: 120 YLLRGNHESANINKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGL-S 178
+LLRGNHE+ N+N+IYGF E K +Y ++++ F++ F +P+A ++ K+ HGGL S
Sbjct: 276 HLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFS 335
Query: 179 PQLTSFSQITNLPRPTEVPEEGLLVDLLWSDPEENISGWGHNDRGVSYTFGADMVHEFLK 238
+ I + R + P+ G + DLLWSDP+ +G + RGVS FG D+ FL+
Sbjct: 336 EDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQP-QNGRSISKRGVSCQFGPDVTKAFLE 394
Query: 239 KFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVD-ENLTCSFHIM 297
+ N+D + R+H+V EGYE + VT+FSAPNYC + N + + + +L FH
Sbjct: 395 ENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQF 454
Query: 298 KP 299
Sbjct: 455 TA 456
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 107 bits (268), Expect = 5e-27
Identities = 50/242 (20%), Positives = 81/242 (33%), Gaps = 26/242 (10%)
Query: 46 IFMAQPMFLYLTTPLKICGDIHGQYNDLLGLFSYGK--------PPPTSTYLFLGDYVDR 97
I P + D+HGQY+ LL L K + GD DR
Sbjct: 59 IKQIMPDTYLGIKKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDR 118
Query: 98 GKHSIETICLLFAYKIRYPD---NIYLLRGNHESANI-------NKIYGFYEECKRRYDI 147
G E + ++ + D ++LL GNHE + ++ Y R
Sbjct: 119 GHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYN 178
Query: 148 KLWKKFTDCFN---CMPVAAVVDHKIFCCHGGLSPQLTSFSQITNLPRPTEVPEEGLLVD 204
KL+ T+ ++ ++ HGG+S + S +
Sbjct: 179 KLYSADTEIGQWLRSKNTIIKINDVLY-MHGGISSEWISRELTLDKANALYRANVDASKK 237
Query: 205 LLWSDPEENISGWGHN---DRG-VSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFA 260
L +D N +G+ RG S TF + L+ FN++ + H E F
Sbjct: 238 SLKADDLLNFLFFGNGPTWYRGYFSETFTEAELDTILQHFNVNHIVVGHTSQERVLGLFH 297
Query: 261 DK 262
+K
Sbjct: 298 NK 299
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 65.9 bits (161), Expect = 1e-12
Identities = 28/139 (20%), Positives = 44/139 (31%), Gaps = 26/139 (18%)
Query: 64 GDIHGQYNDLLGLFSYGKPPPTSTYL-FLGDYVDRGKHSIETICLLFAYKIRYPDNIYLL 122
GDIHG L L S L +GD V++G S + LL +
Sbjct: 25 GDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRLGAYS------V 78
Query: 123 RGNHESANINKIYGFYEECKRR--------------YDIKLWKKFTDCFNCMPVAAVVD- 167
GNH+ K+ ++ ++ + + +P +
Sbjct: 79 LGNHD----AKLLKLVKKLGKKECLKGRDAKSSLAPLAQSIPTDVETYLSQLPHIIRIPA 134
Query: 168 HKIFCCHGGLSPQLTSFSQ 186
H + H GL PQ Q
Sbjct: 135 HNVMVAHAGLHPQRPVDRQ 153
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 62.9 bits (153), Expect = 8e-12
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 62 ICGDIHGQYNDLLGLFSY-GKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIY 120
+ GD+HG Y +L+ G + +GD VDRG ++E + L+
Sbjct: 17 VVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITF------PWFR 70
Query: 121 LLRGNHESANINKIYGFYEECKRRYDIKLWKKFT 154
+RGNHE + E R ++ W
Sbjct: 71 AVRGNHE----QMMIDGLSE---RGNVNHWLLNG 97
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture,
hydrolase; 2.72A {Shigella flexneri 2A}
Length = 280
Score = 56.0 bits (134), Expect = 3e-09
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 11/126 (8%)
Query: 64 GDIHGQYNDLLGLFSYGKPPPTSTYL-FLGDYVDRGKHSIETICLLFAYKIRYPDNIYLL 122
GD+HG Y++L+ L + P L GD V RG S++ + + + D++ L+
Sbjct: 7 GDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLG----DSVRLV 62
Query: 123 RGNHESANINKIYGFYEECKRR-----YDIKLWKKFTDCFNCMPVAAVVD-HKIFCCHGG 176
GNH+ + G + + + + P+ + + K+ H G
Sbjct: 63 LGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAG 122
Query: 177 LSPQLT 182
++PQ
Sbjct: 123 ITPQWD 128
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 40.9 bits (95), Expect = 2e-04
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 64 GDIHGQYNDLLGLFS-----YGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDN 118
+I G L S + Y LG+ V + E I ++ + +N
Sbjct: 8 ANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKK--EN 65
Query: 119 IYLLRGNHESA 129
+ ++RG ++
Sbjct: 66 VKIIRGKYDQI 76
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
AP4A hydrolase, phosphodiesterase, binding, Mn2+
binding, hydrolase; 1.90A {Streptococcus pneumoniae}
PDB: 3qfn_A 3qfo_A*
Length = 270
Score = 40.8 bits (95), Expect = 3e-04
Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 18/128 (14%)
Query: 62 ICGDIHGQYNDLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYL 121
+ DIHG L + + + Y LGD + G + LL
Sbjct: 16 LLSDIHGNTTALEAVLADARQLGVDEYWLLGDILMPGTGRRRILDLL-----DQLPITAR 70
Query: 122 LRGNHESANINKIYGFYEECK-RRYDIKLWKKFT---------DCFNCMPVAAVVDH--- 168
+ GN E + + + + + + + ++ + + P+
Sbjct: 71 VLGNWEDSLWHGVRKELDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDL 130
Query: 169 KIFCCHGG 176
+ H
Sbjct: 131 TVGISHHL 138
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 40.5 bits (94), Expect = 4e-04
Identities = 22/124 (17%), Positives = 34/124 (27%), Gaps = 21/124 (16%)
Query: 62 ICGDIHGQYNDLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYL 121
I D+H L + S LGD V G E + L+
Sbjct: 8 IISDVHANLVALEAVLS--DAGRVDDIWSLGDIVGYGPRPRECVELVRVLAPNIS----- 60
Query: 122 LRGNHESANINKIYGFYEECKRRYDIKLWKKFT---------DCFNCMPVAAVVDHKIFC 172
+ GNH+ A G + + +T +P ++D
Sbjct: 61 VIGNHDWA----CIGRLSLDEFNPVARFASYWTTMQLQAEHLQYLESLPN-RMIDGDWTV 115
Query: 173 CHGG 176
HG
Sbjct: 116 VHGS 119
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} SCOP: d.159.1.6
Length = 228
Score = 39.0 bits (90), Expect = 0.001
Identities = 21/212 (9%), Positives = 44/212 (20%), Gaps = 31/212 (14%)
Query: 64 GDIHGQYNDLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLR 123
+ G L +G+ + + S + +
Sbjct: 12 SNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILS-EAHLPTAYVP 70
Query: 124 GNHESANINKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTS 183
G ++ + +++ + + GG
Sbjct: 71 GPQDAPIWEYLREAANVELVHPEMRNVHET--------FTFWRGPYLVAGVGGEIADEGE 122
Query: 184 FSQITNLPRPTEVPEEGLLVDLLWSDPEENI----------SGWGHNDRGVSYTFGADMV 233
+ L P + LW + G G+ V
Sbjct: 123 PEEHEALRYPAW--VAEYRLKALWELKDYPKIFLFHTMPYHKGLNEQ--------GSHEV 172
Query: 234 HEFLKKFNIDLVCRAHQVVEEGYEFFADKKLV 265
+K N LV A + +E +V
Sbjct: 173 AHLIKTHNPLLVLVAG--KGQKHEMLGASWVV 202
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.047
Identities = 40/309 (12%), Positives = 82/309 (26%), Gaps = 119/309 (38%)
Query: 64 GDIHGQYNDLLGLF--------------SYGKPPPTSTYLFLGDYVDRGKHSIETICLLF 109
G+ QY D+L +F K + + D++ K ++ LF
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI---DHIIMSKDAVSGTLRLF 68
Query: 110 AYKIRYPDNIY------LLRGNHESANINKIYGF-----YEECKRRYDIKLWKKFTDCFN 158
+ + + +LR N Y F E ++ + + + + +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRIN---------YKFLMSPIKTEQRQPSMMT--RMYIEQRD 117
Query: 159 CMPVAAVVDHKIFCCHGGLSPQLTSFSQITNLPRPTEVPE--EGLLVDLLWSDPEENIS- 215
+ + F++ N+ R + + LL P +N+
Sbjct: 118 RL-------------YNDNQV----FAKY-NVSRLQPYLKLRQALLEL----RPAKNVLI 155
Query: 216 ----GWG----------------HNDRGVSY-TFG----ADMVHEFLKKFNIDLVCRAHQ 250
G G D + + + V E L+K +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 251 VVEEGYEFF-----ADKKLVTLFSAPNYCGEFDNAGAMMIVDE----------NLTCSFH 295
+ +L L + Y ++++ NL+C
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYE------NCLLVLLNVQNAKAWNAFNLSC--- 266
Query: 296 IMKPKKKIL 304
KIL
Sbjct: 267 ------KIL 269
Score = 33.7 bits (76), Expect = 0.093
Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 28/111 (25%)
Query: 219 HNDRGVS---YTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCG 275
H D Y + D++ F F + C+ V + + +++ + + +
Sbjct: 6 HMDFETGEHQYQYK-DILSVFEDAFVDNFDCK--DVQDMPKSILSKEEIDHIIMSKD--- 59
Query: 276 EFDNAGAMMIVDENLTCSFHIMKPKKKILEFLSSVMSGEGSSSSIKKNKNY 326
+G + + S K ++ + +F+ V+ NY
Sbjct: 60 --AVSGTLRLFW--TLLS----KQEEMVQKFVEEVL-----------RINY 91
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; 2.25A {Escherichia coli}
SCOP: d.159.1.7
Length = 208
Score = 32.8 bits (75), Expect = 0.10
Identities = 18/118 (15%), Positives = 32/118 (27%), Gaps = 21/118 (17%)
Query: 62 ICGDIHGQYNDLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKI----RYPD 117
DIHG + + LGD ++ G + A +
Sbjct: 30 FASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAH 89
Query: 118 NIYLLRGNHESANINKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHG 175
+ +RGN +S + F + L + ++F HG
Sbjct: 90 KVIAVRGNCDSEVDQMLLHF--PITAPWQQVLLE---------------KQRLFLTHG 130
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 30.4 bits (68), Expect = 1.0
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 235 EFLKKFNIDLVC----RAHQVVEEGYEFFADKKLV-----TLFSAPNYCGEFDNAG-AMM 284
E L++FN+ R + + Y F ++LV + A ++
Sbjct: 218 EMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLL 277
Query: 285 IVDE 288
+VDE
Sbjct: 278 VVDE 281
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family
5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP:
c.1.8.3
Length = 291
Score = 28.7 bits (64), Expect = 2.4
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 260 ADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHI 296
D + + P++ D A I +N+ + H
Sbjct: 157 IDPDNLIIVGTPSWSQNVDEASRDPINAKNIAYTLHF 193
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
function, NPPSFA, national PROJ protein structural and
functional analyses; 1.60A {Aquifex aeolicus} SCOP:
d.159.1.6
Length = 260
Score = 28.2 bits (62), Expect = 3.8
Identities = 29/232 (12%), Positives = 59/232 (25%), Gaps = 39/232 (16%)
Query: 57 TTPLKI--CGDIHGQYNDLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIR 114
P K+ + +++ L L + +G+ + E A +
Sbjct: 3 IMPRKVLAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREP 62
Query: 115 YPDNIYLLRGNHESANINKIYGFYEECKRRY----------DIKLWKKFTDCFNCMPVAA 164
I ++ ++K + E + + + P
Sbjct: 63 NRKVI-HENEHYIIETLDKFFREIGELGVKTFVVPGKNDAPLKIFLRAAYEAETAYPNIR 121
Query: 165 VVDHKIFCCHGGLSPQLTSFSQITNLPRPTEVPEEGLLVDLLWSDPEENISGWGHNDRG- 223
V+ G L E E+ +L W R
Sbjct: 122 VLHEGFAGWRGEF-----EVIGFGGLLTEHEFEEDFVLKYPRWYVEYILKFVNELKPRRL 176
Query: 224 --VSYT----------------FGADMVHEFLKKFNIDLVCRAHQVVEEGYE 257
+ YT G+ +V+ +K N ++ H V +G+E
Sbjct: 177 VTIFYTPPIGEFVDRTPEDPKHHGSAVVNTIIKSLNPEVAIVGH--VGKGHE 226
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein
structure initi midwest center for structural genomics,
PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP:
d.159.1.8
Length = 195
Score = 27.7 bits (61), Expect = 4.5
Identities = 16/92 (17%), Positives = 24/92 (26%), Gaps = 20/92 (21%)
Query: 83 PPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESANINKIYGFYEECK 142
P T LGD+ E + + P L+ GNH+ + F E
Sbjct: 42 KPEDTLYHLGDFTWHFNDKNEYLRIWK----ALPGRKILVMGNHDKDKESLKEYFDEIYD 97
Query: 143 RRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCH 174
I+ +I H
Sbjct: 98 FYKIIEHKG----------------KRILLSH 113
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A
{Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Length = 364
Score = 27.3 bits (60), Expect = 8.2
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 260 ADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFH 295
+ L PN+ D + I EN+ S H
Sbjct: 187 EKGDNMILVGNPNWSQRPDLSADNPIDAENIMYSVH 222
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.435
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,202,914
Number of extensions: 318823
Number of successful extensions: 633
Number of sequences better than 10.0: 1
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 26
Length of query: 326
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 232
Effective length of database: 4,077,219
Effective search space: 945914808
Effective search space used: 945914808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)