RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5889
(326 letters)
>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
sapiens), beta isoform [TaxId: 9606]}
Length = 294
Score = 358 bits (919), Expect = e-125
Identities = 196/290 (67%), Positives = 242/290 (83%), Gaps = 2/290 (0%)
Query: 12 LDNVIKKL--SRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTTPLKICGDIHGQ 69
+D++I++L RG +PG+ + L + +I + +R+IF++QP+ L L PLKICGDIHGQ
Sbjct: 4 IDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQ 63
Query: 70 YNDLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESA 129
Y DLL LF YG PP S YLFLGDYVDRGK S+ETICLL AYKI+YP+N +LLRGNHE A
Sbjct: 64 YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 123
Query: 130 NINKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITN 189
+IN+IYGFY+ECKRRY+IKLWK FTDCFNC+P+AA+VD KIFCCHGGLSP L S QI
Sbjct: 124 SINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRR 183
Query: 190 LPRPTEVPEEGLLVDLLWSDPEENISGWGHNDRGVSYTFGADMVHEFLKKFNIDLVCRAH 249
+ RPT+VP++GLL DLLWSDP++++ GWG NDRGVS+TFGA++V +FL K ++DL+CRAH
Sbjct: 184 IMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAH 243
Query: 250 QVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKP 299
QVVE+GYEFFA ++LVTLFSAPNYCGEFDNAGAMM VDE L CSF I+KP
Sbjct: 244 QVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 293
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 336 bits (864), Expect = e-114
Identities = 104/294 (35%), Positives = 162/294 (55%), Gaps = 19/294 (6%)
Query: 12 LDNVIKKLSRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTTPLKICGDIHGQYN 71
+D + L + R L+++ + +I I + L + P+ +CGDIHGQ+
Sbjct: 30 VDILKAHLMKEGR------LEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFF 83
Query: 72 DLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESANI 131
DL+ LF G P + YLFLGDYVDRG SIE + L+A KI YP ++LLRGNHE ++
Sbjct: 84 DLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHL 143
Query: 132 NKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITNLP 191
+ + F +ECK +Y +++ D F+C+P+AA+++ + C HGGLSP++ + I L
Sbjct: 144 TEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLD 203
Query: 192 RPTEVPEEGLLVDLLWSDPEENISGWG-------HNDRGVSYTFGADMVHEFLKKFNIDL 244
R E P G + D+LWSDP E+ + RG SY + V EFL+ N+
Sbjct: 204 RFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS 263
Query: 245 VCRAHQVVEEGYEFFADKK------LVTLFSAPNYCGEFDNAGAMMIVDENLTC 292
+ RAH+ + GY + + L+T+FSAPNY ++N A++ + N+
Sbjct: 264 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMN 317
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 329 bits (845), Expect = e-114
Identities = 129/289 (44%), Positives = 181/289 (62%), Gaps = 8/289 (2%)
Query: 12 LDNVIKKLSRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTTPLKICGDIHGQYN 71
LD I++L+ L ++ + + A++I + + P+ +CGD+HGQ++
Sbjct: 5 LDQWIEQLNECK------QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFH 58
Query: 72 DLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYLLRGNHESANI 131
DL+ LF G P + YLF+GDYVDRG +S+ET+ LL A K+RY + I +LRGNHES I
Sbjct: 59 DLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQI 118
Query: 132 NKIYGFYEECKRRY-DIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQLTSFSQITNL 190
++YGFY+EC R+Y + +WK FTD F+ +P+ A+VD +IFC HGGLSP + + I L
Sbjct: 119 TQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRAL 178
Query: 191 PRPTEVPEEGLLVDLLWSDPEENISGWGHNDRGVSYTFGADMVHEFLKKFNIDLVCRAHQ 250
R EVP EG + DLLWSDP ++ GWG + RG YTFG D+ F + LV RAHQ
Sbjct: 179 DRLQEVPHEGPMCDLLWSDP-DDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQ 237
Query: 251 VVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKP 299
+V EGY + D+ +VT+FSAPNYC N A+M +D+ L SF P
Sbjct: 238 LVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDP 286
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 320 bits (822), Expect = e-110
Identities = 101/302 (33%), Positives = 164/302 (54%), Gaps = 14/302 (4%)
Query: 5 GAINQESLDNVIKKLSRGVRPGRMINLDQADIVIMIRAARDIFMAQPMFLYLTT----PL 60
G + + +++ + L + ++ +++ + T +
Sbjct: 9 GKVTISFMKELMQWYKDQKK------LHRKCAYQILVQVKEVLSKLSTLVETTLKETEKI 62
Query: 61 KICGDIHGQYNDLLGLFS-YGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNI 119
+CGD HGQ+ DLL +F G P T+ Y+F GD+VDRG S+E I LF +K+ YPD+
Sbjct: 63 TVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHF 122
Query: 120 YLLRGNHESANINKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSP 179
+LLRGNHE+ N+N+IYGF E K +Y ++++ F++ F +P+A ++ K+ HGGL
Sbjct: 123 HLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFS 182
Query: 180 Q-LTSFSQITNLPRPTEVPEEGLLVDLLWSDPEENISGWGHNDRGVSYTFGADMVHEFLK 238
+ + I + R + P+ G + DLLWSDP+ +G + RGVS FG D+ FL+
Sbjct: 183 EDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQ-NGRSISKRGVSCQFGPDVTKAFLE 241
Query: 239 KFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVD-ENLTCSFHIM 297
+ N+D + R+H+V EGYE + VT+FSAPNYC + N + + + +L FH
Sbjct: 242 ENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQF 301
Query: 298 KP 299
Sbjct: 302 TA 303
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 65.7 bits (159), Expect = 3e-13
Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 22/135 (16%)
Query: 62 ICGDIHGQYNDLLGLFS-YGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIY 120
+ GD+HG Y +L+ G + +GD VDRG ++E + L
Sbjct: 17 VVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLEL------ITFPWFR 70
Query: 121 LLRGNHESANINKIYGFYEECKRRYDIKLW------------KKFTDCFNCMPVAAVVDH 168
+RGNHE I+ + + W K + +P+ +
Sbjct: 71 AVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVS 130
Query: 169 ---KIFCCHGGLSPQ 180
K CH
Sbjct: 131 KDKKYVICHADYPFD 145
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 251
Score = 60.1 bits (144), Expect = 4e-11
Identities = 16/136 (11%), Positives = 38/136 (27%), Gaps = 24/136 (17%)
Query: 62 ICGDIHGQYNDLLGLFSY-----GKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYP 116
+ +I G L S + Y LG+ V + E I ++
Sbjct: 5 VLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLT--KK 62
Query: 117 DNIYLLRGNHESANINKIYGFYEECKRRYDIKL-----------------WKKFTDCFNC 159
+N+ ++RG ++ + +++
Sbjct: 63 ENVKIIRGKYDQIIAMSDPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPI 122
Query: 160 MPVAAVVDHKIFCCHG 175
V + +++F +G
Sbjct: 123 YLVDKIGGNEVFGVYG 138
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 44.9 bits (105), Expect = 3e-06
Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 8/123 (6%)
Query: 62 ICGDIHGQYNDLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICL----LFAYKIRYPD 117
DIHG + + LGD ++ G + +
Sbjct: 6 FASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAH 65
Query: 118 NIYLLRGNHESANINKIYGFYEECKRRYDIKLWKK----FTDCFNCMPVAAVVDHKIFCC 173
+ +RGN +S + F + + ++ F + A+ + +
Sbjct: 66 KVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQNDVLVY 125
Query: 174 HGG 176
Sbjct: 126 GHT 128
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus
thermophilus [TaxId: 274]}
Length = 228
Score = 41.2 bits (95), Expect = 7e-05
Identities = 23/205 (11%), Positives = 49/205 (23%), Gaps = 13/205 (6%)
Query: 62 ICGDIHGQYNDLLGLFSYGKPPPTSTYLFLGDYVDRGKHSIETICLLFAYKIRYPDNIYL 121
+ G L +G+ + + S + F
Sbjct: 10 ATSNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAA-FFRILSEAHLPTAY 68
Query: 122 LRGNHESANINKIYGFYEECKRRYDIKLWKKFTDCFNCMPVAAVVDHKIFCCHGGLSPQL 181
+ G ++ +E + +++L + + + G ++ +
Sbjct: 69 VPGPQDAP-------IWEYLREAANVELVHPEMRNVHETFTFWRGPYLVAGVGGEIADEG 121
Query: 182 TSFSQITNLPRPTEVPEEGLLVDLLWSDPEENISGWGHNDRGVSYTF-GADMVHEFLKKF 240
R E L L I + G+ V +K
Sbjct: 122 EPEEH--EALRYPAWVAEYRLKALWELKDYPKIFLFHTMPYHKGLNEQGSHEVAHLIKTH 179
Query: 241 NIDLVCRAHQVVEEGYEFFADKKLV 265
N LV A + +E +V
Sbjct: 180 NPLLVLVAG--KGQKHEMLGASWVV 202
>d1dk0a_ d.35.1.1 (A:) Heme-binding protein A (HasA) {Serratia
marcescens [TaxId: 615]}
Length = 173
Score = 25.9 bits (57), Expect = 5.2
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 275 GEFDNAGAMMIVDENLTCSF-----HIMKPKKKILEFLSSVMSGEGSSSSIKKNK 324
N + NLT + H + + L F + G+ S SI+
Sbjct: 57 SSTANQVTAFVAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDTSPYSIQVPD 111
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.435
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,295,477
Number of extensions: 63231
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 14
Length of query: 326
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 240
Effective length of database: 1,226,816
Effective search space: 294435840
Effective search space used: 294435840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)