BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5891
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1
SV=1
Length = 1282
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/129 (68%), Positives = 103/129 (79%)
Query: 66 VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
+ KKLKLTG P KI+K T+FIK MFNS LEVAKFEGA IRTVSGIRGQIKKAL P+GAF
Sbjct: 1023 IVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGAF 1082
Query: 126 RATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLH 185
RA+FEDK+++SDIVF RTWY V IP YNPVTSLL P +KD+W+GM+TTGQL+ G+
Sbjct: 1083 RASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVR 1142
Query: 186 NDPQFDSMY 194
DS+Y
Sbjct: 1143 LKANKDSLY 1151
>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1
Length = 1183
Score = 164 bits (414), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 79/138 (57%), Positives = 104/138 (75%), Gaps = 3/138 (2%)
Query: 65 EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
E+ KKLKL G P KI+K TAFIKDMF+S +EVA+FEGA+I+TVSGIRG+IK+AL+KP+G
Sbjct: 927 EIVKKLKLVGFPYKIFKNTAFIKDMFSSAMEVARFEGAQIKTVSGIRGEIKRALSKPEGH 986
Query: 125 FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
+RA FEDKI++SDIV R+WY V + K YNPVTSLLL ++K W G++ TGQ++ L
Sbjct: 987 YRAAFEDKILMSDIVILRSWYPVRVKKFYNPVTSLLL--KEKTEWKGLRLTGQIRAAMNL 1044
Query: 185 HNDPQFDSMY-TVSKVKR 201
DS Y + +V+R
Sbjct: 1045 ETPSNPDSAYHKIERVER 1062
>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=bms1 PE=1 SV=2
Length = 1121
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 95/130 (73%), Gaps = 2/130 (1%)
Query: 65 EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
++ KKLKLTGVP KI+K TAFIK MF+S LEVAKFEGA IRTVSGIRGQ+KKA+++ G
Sbjct: 865 DIVKKLKLTGVPYKIFKNTAFIKKMFSSPLEVAKFEGANIRTVSGIRGQVKKAVDQEHGH 924
Query: 125 FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
FRATFEDKI++SDIVF R WY V + K VT+LL K W GM+ TG+++ E GL
Sbjct: 925 FRATFEDKILMSDIVFLRAWYPVQVRKFCTMVTNLL--ETDKTEWNGMRLTGEVRHELGL 982
Query: 185 HNDPQFDSMY 194
+ +S Y
Sbjct: 983 KTPLRPNSQY 992
>sp|Q5SWD9|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1
PE=2 SV=1
Length = 803
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 66 VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
V K++ L+G P KI+ K A ++ MF + +V F+ ++RT G RG IK+ L G
Sbjct: 692 VIKRVVLSGHPFKIFTKMAVVRYMFFNREDVMWFKPVELRTKWGRRGHIKEPLGT-HGHM 750
Query: 126 RATFEDKIMLSDIVFCRTWYKVDIPKL-YNPVTSLLLP 162
+ +F+ K+ D V + +V PK Y+P +P
Sbjct: 751 KCSFDGKLKSQDTVLMNLYKRV-FPKWTYDPYVPEPVP 787
>sp|Q2NL82|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1
PE=1 SV=1
Length = 804
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 66 VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
V K++ L+G P KI+ K A ++ MF + +V F+ ++RT G RG IK+ L G
Sbjct: 693 VIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGRRGHIKEPLGT-HGHM 751
Query: 126 RATFEDKIMLSDIVFCRTWYKVDIPKL-YNPVTSLLLP 162
+ +F+ K+ D V + +V PK Y+P +P
Sbjct: 752 KCSFDGKLKSQDTVLMNLYKRV-FPKWTYDPYVPEPVP 788
>sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1
PE=2 SV=1
Length = 815
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 66 VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
V K++ L+G P KI K+TA ++ MF + +V F+ ++RT G RG IK+ L G
Sbjct: 704 VIKRIVLSGHPFKIMKRTAVVRYMFFNREDVLWFKPVELRTKWGRRGHIKEPLGT-HGHM 762
Query: 126 RATFEDKIMLSDIVFCRTWYKV 147
+ F+ ++ D V + +V
Sbjct: 763 KCHFDGQLKSQDTVLMNLYKRV 784
>sp|Q5R434|TSR1_PONAB Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1
PE=2 SV=1
Length = 805
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 66 VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
V K++ L+G P+K++ K A ++ MF + +V F+ ++RT G RG IK+ L G
Sbjct: 694 VIKRVVLSGHPLKMFTKMAVVRYMFFNREDVLWFKPVELRTKWGRRGHIKEPLGT-HGHM 752
Query: 126 RATFEDKIMLSDIVFCRTWYKVDIPKL-YNPVTSLLLP 162
+ +F K+ D V + +V PK Y+P +P
Sbjct: 753 KCSFNGKLKSQDTVLMNLYKRV-FPKWTYDPYVPEPVP 789
>sp|Q9VP47|TSR1_DROME Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster
GN=CG7338 PE=1 SV=1
Length = 814
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 66 VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
V K++ L+G PM+I +K+A I+ MF +V F+ K+RT G G IK++L G
Sbjct: 699 VLKRVVLSGHPMRINRKSASIRYMFFYKEDVEYFKPVKLRTKCGRLGHIKESLGT-HGHM 757
Query: 126 RATFEDKIMLSDIVFCRTWYKV 147
+ F+ ++ D F + +V
Sbjct: 758 KCYFDGQLRSYDTAFMYLYKRV 779
>sp|O13956|TSR1_SCHPO Ribosome biogenesis protein tsr1 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC23H4.15 PE=3 SV=1
Length = 783
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 66 VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
+ K+ LTG P K++KK I+ MF + +V F+ ++ T G G IK+ L G F
Sbjct: 688 IAKRAVLTGHPFKVHKKLVTIRYMFFNPEDVIWFKPIQLFTKQGRTGYIKEPLGT-HGYF 746
Query: 126 RATFEDKIMLSDIV 139
+ATF KI + D V
Sbjct: 747 KATFNGKITVQDTV 760
>sp|Q07381|TSR1_YEAST Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1
Length = 788
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 66 VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
+ K+ LTG P + +K ++ MF +V F+ + T SG G IK++L G F
Sbjct: 697 LAKRAILTGHPFRFHKTVVTVRYMFFRPEDVEWFKSIPLFTKSGRSGFIKESLGT-HGYF 755
Query: 126 RATFEDKIMLSDIV----FCRTWYKVDIP 150
+ATF+ K+ D+V + R W +P
Sbjct: 756 KATFDGKLSAQDVVAMSLYKRMWPMPSLP 784
>sp|Q61WR2|TSR1_CAEBR Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis briggsae
GN=tag-151 PE=3 SV=1
Length = 788
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 66 VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
V K+ L+G P KI ++ ++ MF + ++ F+ ++ T SG RG IK+A+ G
Sbjct: 671 VLKRTVLSGHPYKINRRAVVVRYMFFNREDIDWFKPVELYTPSGRRGHIKEAVGT-HGHM 729
Query: 126 RATFEDKIMLSDIVFCRTWYKV 147
+ F+ ++ D V + +V
Sbjct: 730 KCRFDQQLNAQDSVMLNLYKRV 751
>sp|Q19329|TSR1_CAEEL Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis elegans
GN=tag-151 PE=3 SV=1
Length = 785
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 66 VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
V K+ L G P KI ++ ++ MF + ++ F+ ++ T SG RG IK+A+ G
Sbjct: 668 VLKRTVLAGHPYKINRRAVVVRYMFFNREDIEWFKPVELYTPSGRRGHIKEAVGT-HGNM 726
Query: 126 RATFEDKIMLSDIVFCRTWYKV 147
+ F+ ++ D V + +V
Sbjct: 727 KCRFDQQLNAQDSVMLNLYKRV 748
>sp|A6TDH2|AAS_KLEP7 Bifunctional protein aas OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=aas PE=3 SV=1
Length = 719
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 55 ETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQI 114
E P V + E ++ ++G MKIY AF+ +T+ + EGA++ S ++G +
Sbjct: 95 EQGRPVVIFPE--GRISVSGSLMKIYDGAAFVAAKSQATIVPLRIEGAELTPFSRLKGLV 152
Query: 115 KKAL 118
K+ L
Sbjct: 153 KRRL 156
>sp|Q9YA48|KTHY_AERPE Putative thymidylate kinase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=tmk PE=3
SV=1
Length = 208
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 86 IKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQG 123
+K M+ L +A+ G K+ V G+RG +++ + QG
Sbjct: 156 VKSMYEEVLRLARARGVKVIRVEGVRGGVERGIEDVQG 193
>sp|B7LNJ2|AAS_ESCF3 Bifunctional protein aas OS=Escherichia fergusonii (strain ATCC
35469 / DSM 13698 / CDC 0568-73) GN=aas PE=3 SV=1
Length = 719
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 55 ETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQI 114
E P V + E ++ +TG MKIY F+ +T+ + EGA++ S ++G +
Sbjct: 95 EQGRPVVIFPE--GRITVTGSLMKIYDGAGFVAAKSGATVVPVRIEGAELTHFSRLKGLV 152
Query: 115 KKAL 118
K+ L
Sbjct: 153 KRRL 156
>sp|A4WE11|AAS_ENT38 Bifunctional protein aas OS=Enterobacter sp. (strain 638) GN=aas
PE=3 SV=1
Length = 719
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 55 ETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQI 114
E P V + E ++ +TG MKIY F+ +T+ + EGA++ S ++G +
Sbjct: 95 EQGRPVVIFPE--GRISVTGSLMKIYDGAGFVAAKSKATVVPLRIEGAELTYFSRLKGLV 152
Query: 115 KKAL 118
K+ L
Sbjct: 153 KQRL 156
>sp|B5XUP2|AAS_KLEP3 Bifunctional protein aas OS=Klebsiella pneumoniae (strain 342)
GN=aas PE=3 SV=1
Length = 719
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 55 ETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQI 114
E P V + E ++ ++G MKIY AF+ +T+ + +GA++ S ++G +
Sbjct: 95 EQGRPVVIFPE--GRISVSGSLMKIYDGAAFVAAKSQATIVPLRIDGAELTPFSRLKGLV 152
Query: 115 KKAL 118
K+ L
Sbjct: 153 KRRL 156
>sp|A7MR36|AAS_CROS8 Bifunctional protein aas OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=aas PE=3 SV=1
Length = 719
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 59 PKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKAL 118
P V + E ++ ++G MKIY+ F+ +T+ + EGA++ S ++G +K+ L
Sbjct: 99 PVVIFPE--GRISISGSLMKIYEGAGFVAAKSQATVIPVRIEGAELTFFSRLKGLVKRRL 156
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,307,638
Number of Sequences: 539616
Number of extensions: 3708336
Number of successful extensions: 37955
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 33541
Number of HSP's gapped (non-prelim): 3301
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)