Query psy5891
Match_columns 259
No_of_seqs 174 out of 339
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 20:54:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5192 BMS1 GTP-binding prote 100.0 1.8E-41 3.9E-46 335.8 -0.4 159 53-218 832-990 (1077)
2 PF04950 DUF663: Protein of un 100.0 8E-39 1.7E-43 291.6 5.5 97 50-147 201-297 (297)
3 KOG1980|consensus 100.0 2.5E-34 5.3E-39 284.9 4.9 100 52-153 648-747 (754)
4 COG5177 Uncharacterized conser 99.9 6.7E-28 1.4E-32 236.4 1.6 111 43-155 652-765 (769)
5 KOG0461|consensus 82.5 0.69 1.5E-05 46.2 1.6 73 64-137 421-494 (522)
6 PTZ00041 60S ribosomal protein 76.8 7.7 0.00017 32.9 5.8 77 69-147 23-118 (120)
7 COG2451 Ribosomal protein L35A 75.2 8.3 0.00018 31.9 5.5 67 79-147 23-98 (100)
8 PRK04337 50S ribosomal protein 65.4 14 0.00031 29.8 4.7 53 80-133 18-75 (87)
9 PF01247 Ribosomal_L35Ae: Ribo 56.9 22 0.00048 28.9 4.5 54 80-134 18-84 (95)
10 KOG1951|consensus 39.4 20 0.00044 30.3 1.9 25 208-237 1-25 (115)
11 PF02084 Bindin: Bindin; Inte 32.2 22 0.00049 33.3 1.1 12 29-40 161-172 (238)
12 COG2824 PhnA Uncharacterized Z 24.2 86 0.0019 26.6 3.1 39 50-89 45-83 (112)
13 PRK10220 hypothetical protein; 23.5 89 0.0019 26.4 3.0 36 49-84 43-78 (111)
14 TIGR00686 phnA alkylphosphonat 21.6 83 0.0018 26.5 2.5 37 49-85 42-78 (109)
15 KOG1834|consensus 20.6 48 0.001 35.8 1.1 33 30-62 899-934 (952)
No 1
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-41 Score=335.76 Aligned_cols=159 Identities=32% Similarity=0.521 Sum_probs=155.7
Q ss_pred CCCccccCCCCeeEEEeEEEEeeeeEEeeceEEEeccCCChhhhcccccceEEecccccceeecccCCCCceeEEEeccc
Q psy5891 53 EDETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDK 132 (259)
Q Consensus 53 ~~gt~~~~d~~~~IvKKlKLtG~P~KI~K~TAfIk~MF~S~lEV~kFkga~LrTvsGIRG~IKkalgtp~G~FRatFEdk 132 (259)
.-||+..+|-+..|||||||+|+|++|++||+|||+||+|.+||++|+||+|+||||+||+||.|+|. +|+|||.||++
T Consensus 832 a~g~i~dv~~~~~lvkklklvg~p~qi~qnt~fvrdmfts~lev~kfega~lk~vsglrgqvk~~~~k-~g~yra~fe~k 910 (1077)
T COG5192 832 ALGTITDVNGDAKLVKKLKLVGYPKQIVQNTVFVRDMFTSDLEVLKFEGASLKAVSGLRGQVKGPHGK-NGEYRAVFEGK 910 (1077)
T ss_pred EeeeeEeccccHHHHhhhhhccCcHHHhhhhHhHHHhhhhhhHHHhhcccceeeeccccccccCccCC-Cccchheeccc
Confidence 35899999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cccCCEEEecccccccccccccccccCCCCCCCCCCCcccchHHHHHHHhCCCCCCCCCCCCcccccCcccccCccCCHH
Q psy5891 133 IMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLHNDPQFDSMYTVSKVKRTGVYSTRASIT 212 (259)
Q Consensus 133 Il~sDiVfLR~wYkr~~PKfynpvts~l~p~~~k~~W~gMrt~geLR~e~~i~~p~~~DS~Ykpi~R~~r~fnpl~IPk~ 212 (259)
|+|||||.||+||||.+.+||+||+|+|+ .|+|+|.++|+|...|+..|.++||.|-.+||..++|+.+.+|+.
T Consensus 911 mlmsdii~lr~~~pv~v~r~~~pv~~ll~------~wrglr~~~eir~sl~l~~~~~p~~~~~~~e~~~~~~~~~~~pr~ 984 (1077)
T COG5192 911 MLMSDIITLRCFVPVEVHRIFIPVDNLLG------KWRGLRRLHEIRESLGLTHSYAPQNDSSSEEMGYGAEEDYSLPRE 984 (1077)
T ss_pred hhhhheeeEEeeeeeEEEEeeccHHHHHH------HHhhhHHHHHHHHHhCCCCCCCCCccchhhhhhccccccccCcHh
Confidence 99999999999999999999999999986 699999999999999999999999999999999999999999999
Q ss_pred HHHhhC
Q psy5891 213 LRKAKG 218 (259)
Q Consensus 213 Lq~~L~ 218 (259)
+|+.||
T Consensus 985 ie~~lp 990 (1077)
T COG5192 985 IESKLP 990 (1077)
T ss_pred HHhhCC
Confidence 999999
No 2
>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.; PDB: 1WB1_D 1WB3_B 1WB2_A.
Probab=100.00 E-value=8e-39 Score=291.57 Aligned_cols=97 Identities=47% Similarity=0.647 Sum_probs=73.8
Q ss_pred CCCCCCccccCCCCeeEEEeEEEEeeeeEEeeceEEEeccCCChhhhcccccceEEecccccceeecccCCCCceeEEEe
Q psy5891 50 SSDEDETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATF 129 (259)
Q Consensus 50 ~~~~~gt~~~~d~~~~IvKKlKLtG~P~KI~K~TAfIk~MF~S~lEV~kFkga~LrTvsGIRG~IKkalgtp~G~FRatF 129 (259)
.---.|+++++||+++|+|||+|+|+|+||||||||||+||+|++||+||+|++|+|+||+||+||+|||+ ||+|||+|
T Consensus 201 ~l~atG~v~~~d~~~~i~Kki~L~G~P~ki~k~~a~vr~MF~~~~dv~~F~~~~l~T~~G~rG~Ik~~lgt-~G~fka~F 279 (297)
T PF04950_consen 201 RLVATGSVLNVDPDRIIVKKIKLTGYPFKIHKRTAVVRGMFFNPEDVAWFKGAELRTKSGIRGHIKESLGT-HGYFKATF 279 (297)
T ss_dssp -B-EEEEEEEE--GGGS-B--EEEEEEEEEESSSCEECSSSSTCCHHHHS-S--BEETTS-BEEEEE-BTT-TTBBEEEE
T ss_pred eEEEeeeEeCCCCcchhheeeeecCchheEECceEEhhhhcCCHHHHHhhcCCEEEeeccCCCEECeeECC-CCcEEEEE
Confidence 34457999999999999999999999999999999999999999999999999999999999999999987 99999999
Q ss_pred ccccccCCEEEecccccc
Q psy5891 130 EDKIMLSDIVFCRTWYKV 147 (259)
Q Consensus 130 EdkIl~sDiVfLR~wYkr 147 (259)
||+|+++|||||+.|++|
T Consensus 280 ~~~i~~~D~V~~~lykrV 297 (297)
T PF04950_consen 280 EDKIKQSDIVFMRLYKRV 297 (297)
T ss_dssp SS---SS-EEEEE-----
T ss_pred CCcCCCCCEEEEecCCCC
Confidence 999999999999777764
No 3
>KOG1980|consensus
Probab=100.00 E-value=2.5e-34 Score=284.89 Aligned_cols=100 Identities=30% Similarity=0.382 Sum_probs=97.7
Q ss_pred CCCCccccCCCCeeEEEeEEEEeeeeEEeeceEEEeccCCChhhhcccccceEEecccccceeecccCCCCceeEEEecc
Q psy5891 52 DEDETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFED 131 (259)
Q Consensus 52 ~~~gt~~~~d~~~~IvKKlKLtG~P~KI~K~TAfIk~MF~S~lEV~kFkga~LrTvsGIRG~IKkalgtp~G~FRatFEd 131 (259)
=..|+++++||+|+|+||.+|+||||||||+.++||+||||++||.||++++|+|++|++|+||+|||| ||+|||+|++
T Consensus 648 iAtG~~l~~dpdRiv~KRaVLsGhPfKi~kk~v~VRYMFFn~EDV~wFKpIqL~Tk~gR~GhIKEplGT-HG~fKc~Fdg 726 (754)
T KOG1980|consen 648 IATGSLLNCDPDRIVAKRAVLSGHPFKIHKKYVVVRYMFFNREDVEWFKPIQLYTKSGRTGHIKEPLGT-HGYFKCYFDG 726 (754)
T ss_pred eeeeeeeccCCcceeEeeeeecCCCceeeeeeEEEeeecCCHhHeeeecceeeeccccccccccccccC-cceeEEEecC
Confidence 357999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ccccCCEEEecccccccccccc
Q psy5891 132 KIMLSDIVFCRTWYKVDIPKLY 153 (259)
Q Consensus 132 kIl~sDiVfLR~wYkr~~PKfy 153 (259)
+|+.+|+|+| +||||+||+|.
T Consensus 727 kLksqDtV~M-sLYKRvfP~~~ 747 (754)
T KOG1980|consen 727 KLKSQDTVMM-SLYKRVFPKWT 747 (754)
T ss_pred cccccchHHH-HHHHhhccccc
Confidence 9999999999 99999999993
No 4
>COG5177 Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=6.7e-28 Score=236.43 Aligned_cols=111 Identities=32% Similarity=0.328 Sum_probs=101.6
Q ss_pred ccccCC-CCC--CCCCccccCCCCeeEEEeEEEEeeeeEEeeceEEEeccCCChhhhcccccceEEecccccceeecccC
Q psy5891 43 DESADD-NSS--DEDETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALN 119 (259)
Q Consensus 43 ~~~~~~-~~~--~~~gt~~~~d~~~~IvKKlKLtG~P~KI~K~TAfIk~MF~S~lEV~kFkga~LrTvsGIRG~IKkalg 119 (259)
-.||-| +++ -..|+..++|++++|+||.+|+|||||+||+.++||+||||++||.||++++|.|++|+.|.||+|||
T Consensus 652 kkS~~d~~s~~l~a~g~~~n~d~~rviakrAvLtGhPFk~hK~~vtvryMFf~pEdV~wFk~Iqlftk~grtGfIKeplG 731 (769)
T COG5177 652 KKSALDELSATLLASGGMNNFDGDRVIAKRAVLTGHPFKNHKRYVTVRYMFFSPEDVMWFKNIQLFTKRGRTGFIKEPLG 731 (769)
T ss_pred ccCccchhhhhhhhcccccccCcchhhhhhhhhcCCCcccceeEEEEeeecCCHhHeeeecchhhhhhcCccceeccccc
Confidence 345444 332 35899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEeccccccCCEEEecccccccccccccc
Q psy5891 120 KPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNP 155 (259)
Q Consensus 120 tp~G~FRatFEdkIl~sDiVfLR~wYkr~~PKfynp 155 (259)
| ||+|||||+++|..+|+|.| +||||.+|.=+.|
T Consensus 732 T-hGyFKatF~gki~~qD~VaM-SLYKRm~p~p~~~ 765 (769)
T COG5177 732 T-HGYFKATFSGKIKSQDKVAM-SLYKRMFPEPQLP 765 (769)
T ss_pred C-cceeeEEecCcccccchhhH-HHHHHhccCcccc
Confidence 9 99999999999999999999 9999999975544
No 5
>KOG0461|consensus
Probab=82.46 E-value=0.69 Score=46.22 Aligned_cols=73 Identities=23% Similarity=0.382 Sum_probs=56.5
Q ss_pred eeEEEeEEEEeeeeEEeec-eEEEeccCCChhhhcccccceEEecccccceeecccCCCCceeEEEeccccccCC
Q psy5891 64 AEVTKKLKLTGVPMKIYKK-TAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSD 137 (259)
Q Consensus 64 ~~IvKKlKLtG~P~KI~K~-TAfIk~MF~S~lEV~kFkga~LrTvsGIRG~IKkalgtp~G~FRatFEdkIl~sD 137 (259)
+.|.||=-=.|+--++.+. .+.+++||--.--..-|.|-++.+.+|-||.|-.++|. .|.||.+|-+++...-
T Consensus 421 lrifkrK~k~G~veRv~~d~svI~~~lFK~etn~dlfvG~~v~lStGe~G~Ie~aFGq-sgKf~itf~~~lspe~ 494 (522)
T KOG0461|consen 421 LRIFKRKCKKGHVERVEKDFSVICTGLFKAETNFDLFVGFQVCLSTGERGKIEGAFGQ-SGKFRITFAEKLSPEL 494 (522)
T ss_pred hhhhhhhhcccchhhhhccHHHHHhhhhccccccceeeeeEEEeccCCccceeccccC-cceEEEEecccCChhh
Confidence 3344444444555554443 34578999988888889999999999999999999998 8999999999986543
No 6
>PTZ00041 60S ribosomal protein L35a; Provisional
Probab=76.83 E-value=7.7 Score=32.91 Aligned_cols=77 Identities=22% Similarity=0.338 Sum_probs=55.2
Q ss_pred eEEEEeee---eEEeeceEEEec-cCCChhhhcccccceEEecc------------cccceeecccCCCCceeEEEeccc
Q psy5891 69 KLKLTGVP---MKIYKKTAFIKD-MFNSTLEVAKFEGAKIRTVS------------GIRGQIKKALNKPQGAFRATFEDK 132 (259)
Q Consensus 69 KlKLtG~P---~KI~K~TAfIk~-MF~S~lEV~kFkga~LrTvs------------GIRG~IKkalgtp~G~FRatFEdk 132 (259)
|-+++||= -.-+-|+|.||= --++.+|+.+|.|-.+-=++ =|-|.|..+-|. .|.+||.|...
T Consensus 23 kgv~lgYkRg~~nQ~~~~aLlKieGV~~~~~a~fYlGKrvayvyka~~~~~~~k~RviwGKVtR~HGn-sGvVrAkF~~n 101 (120)
T PTZ00041 23 KAVFLGYKRSKVNQYPNVALLKIEGVNTREDARFYLGKRVAYVYKAKKLKNGTKFRAIWGKITRPHGN-SGVVRARFNKN 101 (120)
T ss_pred EEEEEEeccccccCCCceEEEEecCcCChhhhHhhccceEEEEEcCccccCCcceeEEEEEEEcccCC-CcEEEEEeCCC
Confidence 44555653 124557888883 47889999999776553321 156999999887 89999999987
Q ss_pred cc---cCCEEEecccccc
Q psy5891 133 IM---LSDIVFCRTWYKV 147 (259)
Q Consensus 133 Il---~sDiVfLR~wYkr 147 (259)
+- +++.|.+ +|||-
T Consensus 102 LPp~A~G~~VrV-mlyPs 118 (120)
T PTZ00041 102 LPPKAIGSRVRV-FLYPS 118 (120)
T ss_pred CChHHcCCeEEE-EEccC
Confidence 74 5777887 77764
No 7
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=75.24 E-value=8.3 Score=31.89 Aligned_cols=67 Identities=27% Similarity=0.374 Sum_probs=51.5
Q ss_pred EeeceEEEecc-CCChhhhcccccce--EEecc-c--ccceeecccCCCCceeEEEeccccc---cCCEEEecccccc
Q psy5891 79 IYKKTAFIKDM-FNSTLEVAKFEGAK--IRTVS-G--IRGQIKKALNKPQGAFRATFEDKIM---LSDIVFCRTWYKV 147 (259)
Q Consensus 79 I~K~TAfIk~M-F~S~lEV~kFkga~--LrTvs-G--IRG~IKkalgtp~G~FRatFEdkIl---~sDiVfLR~wYkr 147 (259)
.+-+.+.||-- -.|++|...|.|-. ++-.+ | +.|.|-..-|. .|..||.|+..+- .++-|.+ .+|+.
T Consensus 23 q~P~~~liKi~gv~s~~eA~~y~gk~v~yk~~~~G~Vi~G~V~R~HGn-sGaVrarF~~~LP~qa~G~~v~v-~ly~~ 98 (100)
T COG2451 23 QHPNVSLIKIEGVDSPEEAQFYLGKRVCYKYRSSGRVIKGKVVRTHGN-SGAVRARFERNLPGQALGTSVEV-KLYPS 98 (100)
T ss_pred cCCceEEEEEecCCCHHHHHhhhccEEEEEeCCCCcEEEEEEEEecCC-cceEEEEecCCCCchhcCcEEEE-EEccC
Confidence 34467888877 89999999996644 44444 6 78899888887 8999999998874 4677777 67764
No 8
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=65.45 E-value=14 Score=29.77 Aligned_cols=53 Identities=28% Similarity=0.499 Sum_probs=40.7
Q ss_pred eeceEEEec-cCCChhhhcccccceE--Eeccc--ccceeecccCCCCceeEEEecccc
Q psy5891 80 YKKTAFIKD-MFNSTLEVAKFEGAKI--RTVSG--IRGQIKKALNKPQGAFRATFEDKI 133 (259)
Q Consensus 80 ~K~TAfIk~-MF~S~lEV~kFkga~L--rTvsG--IRG~IKkalgtp~G~FRatFEdkI 133 (259)
+-|++.+|= -.++.+|..+|.|-.+ ..+.| |.|.|..+-|. .|.+||.|...+
T Consensus 18 ~~~~aLlkiegv~~~~~a~fylGKrv~yvyk~grviwGKItR~HGn-sGvVrAkF~~nL 75 (87)
T PRK04337 18 YNRQVIIKPLGVDDREEAAKLIGRKVIWKDPTGNKYVGKIVRVHGN-RGEVRARFKPGL 75 (87)
T ss_pred CCceEEEEEcCcCCHHHHHhhcCceEEEEeCCCCEEEEEEEeeeCC-CceEEEEECCCC
Confidence 446777773 4788999999966554 34445 78999999887 899999998765
No 9
>PF01247 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro: IPR001780 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L35A eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of: Vertebrate L35A. Caenorhabditis elegans L35A (F10E7.7). Saccharomyces cerevisiae L37A/L37B (Rp47). Plant L35A. Pyrococcus woesei L35A homologue []. These proteins have 87 to 110 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_j 2LP6_A 1SQR_A 4A18_H 4A1D_H 4A19_H 4A1B_H 3IZS_j.
Probab=56.90 E-value=22 Score=28.92 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=38.0
Q ss_pred eeceEEEec-cCCChhhhcccccceEEecc------------cccceeecccCCCCceeEEEeccccc
Q psy5891 80 YKKTAFIKD-MFNSTLEVAKFEGAKIRTVS------------GIRGQIKKALNKPQGAFRATFEDKIM 134 (259)
Q Consensus 80 ~K~TAfIk~-MF~S~lEV~kFkga~LrTvs------------GIRG~IKkalgtp~G~FRatFEdkIl 134 (259)
+-|+|.||= --++.+|..+|.|-.+-=++ =|-|.|..+-|. .|.+||.|...+-
T Consensus 18 ~~~~aLlKiegV~~~~~a~fylGKrv~yvyk~~~~~~~~k~r~iwGkV~r~HGn-sGvVrAkF~~nLP 84 (95)
T PF01247_consen 18 HPNTALLKIEGVNTKEDAQFYLGKRVAYVYKAKNKKNGSKGRVIWGKVTRPHGN-SGVVRAKFKKNLP 84 (95)
T ss_dssp CEEEEEEEESS-STCHHHHTTTT-EEEEEECE-SSSTTECSEEEEEEEEEESTT-TTEEEEEESS--S
T ss_pred CCCeeEEeecCccCHHHHHhhcCcEEEEEEecccccCCCcEeEEEEEEEeEEcC-CCEEEEEeCCCCC
Confidence 346677764 47889999999776654321 267999999988 9999999997653
No 10
>KOG1951|consensus
Probab=39.37 E-value=20 Score=30.26 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=19.5
Q ss_pred cCCHHHHHhhCCCccCcccCcccccccCCC
Q psy5891 208 RASITLRKAKGKTSLGLFSNPFFTELSKKP 237 (259)
Q Consensus 208 ~IPk~Lq~~L~~~~~~~~s~p~~~~~~~~~ 237 (259)
.||+.||++|| |.|.|+-.---+.|
T Consensus 1 ~iPKalqk~LP-----fkskpka~~~~k~~ 25 (115)
T KOG1951|consen 1 MIPKALQKALP-----FKSKPKAAKKRKRP 25 (115)
T ss_pred CccHHHHHhCC-----ccccchhhcccccc
Confidence 48999999999 99999766533333
No 11
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=32.17 E-value=22 Score=33.27 Aligned_cols=12 Identities=67% Similarity=0.963 Sum_probs=6.8
Q ss_pred hhhHHHhhhccc
Q psy5891 29 KEEEEEEQEDSA 40 (259)
Q Consensus 29 ~~~~~~~~~~~~ 40 (259)
.||||||++|.|
T Consensus 161 qEeeeEEe~DAa 172 (238)
T PF02084_consen 161 QEEEEEEEQDAA 172 (238)
T ss_pred hhhHHHHHHHHh
Confidence 355666666654
No 12
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=24.20 E-value=86 Score=26.58 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=31.0
Q ss_pred CCCCCCccccCCCCeeEEEeEEEEeeeeEEeeceEEEecc
Q psy5891 50 SSDEDETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDM 89 (259)
Q Consensus 50 ~~~~~gt~~~~d~~~~IvKKlKLtG~P~KI~K~TAfIk~M 89 (259)
--|..|.++.-.-+..|+|-||+.|.+.-|-+.| .||++
T Consensus 45 v~DsnGn~L~dGDsV~lIKDLkVKGss~~lK~GT-kvknI 83 (112)
T COG2824 45 VKDSNGNLLADGDSVTLIKDLKVKGSSKVLKQGT-KVKNI 83 (112)
T ss_pred EEcCCCcEeccCCeEEEEEeeeecCCcceeeccc-EEeeE
Confidence 3467899999999999999999999996555555 45554
No 13
>PRK10220 hypothetical protein; Provisional
Probab=23.45 E-value=89 Score=26.42 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=31.7
Q ss_pred CCCCCCCccccCCCCeeEEEeEEEEeeeeEEeeceE
Q psy5891 49 NSSDEDETVEPKVFYAEVTKKLKLTGVPMKIYKKTA 84 (259)
Q Consensus 49 ~~~~~~gt~~~~d~~~~IvKKlKLtG~P~KI~K~TA 84 (259)
-+.|..|+++.-.-+..++|-|++.|..+-|-+.|.
T Consensus 43 ~vkDsnG~~L~dGDsV~viKDLkVKGss~~~K~GTk 78 (111)
T PRK10220 43 IVKDANGNLLADGDSVTIVKDLKVKGSSSMLKIGTK 78 (111)
T ss_pred eEEcCCCCCccCCCEEEEEeeccccccccceeCccE
Confidence 367889999999999999999999999988777774
No 14
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=21.63 E-value=83 Score=26.49 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=32.8
Q ss_pred CCCCCCCccccCCCCeeEEEeEEEEeeeeEEeeceEE
Q psy5891 49 NSSDEDETVEPKVFYAEVTKKLKLTGVPMKIYKKTAF 85 (259)
Q Consensus 49 ~~~~~~gt~~~~d~~~~IvKKlKLtG~P~KI~K~TAf 85 (259)
-+.|..|+++.-.-+..|+|-|++.|..+-|-+.|.+
T Consensus 42 ~~kDsnG~~L~dGDsV~liKDLkVKGss~~~K~GTkV 78 (109)
T TIGR00686 42 IVKDCNGNLLANGDSVILIKDLKVKGSSLVLKKGTKI 78 (109)
T ss_pred eEEcCCCCCccCCCEEEEEeeccccCcccceeCccEE
Confidence 4678899999999999999999999999888777753
No 15
>KOG1834|consensus
Probab=20.63 E-value=48 Score=35.82 Aligned_cols=33 Identities=45% Similarity=0.525 Sum_probs=16.9
Q ss_pred hhHHHhhhcc--cccccccCCCCCCC-CCccccCCC
Q psy5891 30 EEEEEEQEDS--AFSDESADDNSSDE-DETVEPKVF 62 (259)
Q Consensus 30 ~~~~~~~~~~--~~~~~~~~~~~~~~-~gt~~~~d~ 62 (259)
||||||.||. .-+.+|||+.++|| +|+=.++..
T Consensus 899 ~EeeeE~e~~ee~s~~~~~ds~sedEee~~e~~ph~ 934 (952)
T KOG1834|consen 899 EEEEEETEDEEESSDSDSADSESEDEEEGTEVGPHL 934 (952)
T ss_pred ccccccccccccccccccccCccchhhhccccCCCc
Confidence 3344444441 12335778877775 455344443
Done!