RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5891
(259 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 9e-07
Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 53/202 (26%)
Query: 13 TARRHKITSALAGLNSKEEEEEEQEDSAFSDESADDNSSDEDETVEPKVF--YAEV-TKK 69
T R ++T L+ + + + + DE + Y + +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMT-LT----------PDEVKS--LLLKYLDCRPQD 317
Query: 70 LK---LTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALN--KP--- 121
L LT P ++ I+D + K+ T+ I+ +LN +P
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI------IESSLNVLEPAEY 371
Query: 122 QGAFR--ATFEDKIMLSDIVFCRTWYKVD-------IPKLYNPVTSLLLPPEQKDSWTG- 171
+ F + F + I+ W+ V + KL+ SL+ +K
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--YSLV----EKQPKEST 425
Query: 172 -------MKTTGQLKRERGLHN 186
++ +L+ E LH
Sbjct: 426 ISIPSIYLELKVKLENEYALHR 447
Score = 42.5 bits (99), Expect = 1e-04
Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 46/181 (25%)
Query: 84 AFIKDM-FNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRA-----TFEDKIMLSD 137
AF+ + ++ K I + + +I + T K +
Sbjct: 28 AFVDNFDCKDVQDMPK----SILS----KEEIDHIIMSKDAVSGTLRLFWTLLSK--QEE 77
Query: 138 IV--FCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLHNDPQFDSMYT 195
+V F +++ L +P+ + EQ+ + M +R+R L+ND Q + Y
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKT-----EQRQP-SMMTRMYIEQRDR-LYNDNQVFAKYN 130
Query: 196 VSKVK-----RTGVYSTRASITLRKAK----------GKTSLGLFSNPFFTELSKKPKTV 240
VS+++ R + LR AK GKT + L + K +
Sbjct: 131 VSRLQPYLKLRQALLE------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 241 F 241
F
Sbjct: 185 F 185
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 4e-04
Identities = 41/212 (19%), Positives = 71/212 (33%), Gaps = 68/212 (32%)
Query: 70 LKLTGVPMKIYKKTAFIKDMFNSTL------EVAKFEGAKIRTVSG----IRGQIKKALN 119
L ++ + + + ++ + NS L E++ GAK VSG + G + L
Sbjct: 339 LSISNLTQEQVQD--YV-NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-LNLTLR 394
Query: 120 K---PQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVT----SLLLPPEQKDSWTGM 172
K P G ++ +I S+ R K+ + PV S LL P
Sbjct: 395 KAKAPSGLDQS----RIPFSE----R---KLKFSNRFLPVASPFHSHLLVPAS------- 436
Query: 173 KTTGQLKRERGLHNDPQFDSMYTVSKVKRTGVYSTRASITLRKAKGKTSLGLFSNPFFTE 232
+ + + + + ++ VY T LR G
Sbjct: 437 --------DLINKDLVKNNVSFNAKDIQIP-VYDTFDGSDLRVLSG-------------- 473
Query: 233 LSKKPKTVFLVMVLPSIWRK-----ATHLLTY 259
S + V ++ LP W ATH+L +
Sbjct: 474 -SISERIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 37.7 bits (87), Expect = 0.004
Identities = 32/187 (17%), Positives = 53/187 (28%), Gaps = 59/187 (31%)
Query: 75 VPMKIYKKTAFIKDMFNSTLE------------------VAKFEGAKIRTVS-GIRGQIK 115
VP + + +++ FN L V KF G V GQ
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 116 KALNKPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTT 175
+ LN FE+ + + DI + + + LL T
Sbjct: 82 QVLNL---CLTE-FENCYLEGN----------DI----HALAAKLLQEN---------DT 114
Query: 176 GQLKRERGLHNDPQFDSMYTVSKVKRTGVYSTRASITLRKAK-GKTSL-GLF-----SNP 228
+K + + N T + + S R G L +F ++
Sbjct: 115 TLVKTKELIKN------YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 229 FFTELSK 235
+F EL
Sbjct: 169 YFEELRD 175
Score = 31.6 bits (71), Expect = 0.30
Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 66/176 (37%)
Query: 77 MKIYKKTAFIKDMFN------------STLEVAKFEGAKIRTV--SGIRGQ-IKKALNKP 121
M +YK + +D++N S L++ T+ G +G+ I++ N
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI-NNPVNLTIHFGGEKGKRIRE--NYS 1689
Query: 122 QGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRE 181
F T D + ++ +F K N ++ ++ E
Sbjct: 1690 AMIFE-TIVDGKLKTEKIF----------KEINEHSTSY-------TFRS---------E 1722
Query: 182 RGLHNDPQFDS--MYTVSKVKRTGVYSTRASITLRKAKGKT---------SLGLFS 226
+GL + QF + + K A+ K+KG SLG ++
Sbjct: 1723 KGLLSATQFTQPALTLMEK----------AAFEDLKSKGLIPADATFAGHSLGEYA 1768
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 28.7 bits (65), Expect = 1.8
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 28 SKEEEEEEQEDSAFSDESADDNSSDEDETVEPKVFYAEVTKKLK 71
SK E EE + + + ++S DE E + TKK++
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVE 259
Score = 26.8 bits (60), Expect = 8.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 27 NSKEEEEEEQEDSAFSDESADDNSSDEDETVEPKVFYAEVTKK 69
+ EE EE+E + E +DD ++ E+E E K +V K
Sbjct: 219 ETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 28.3 bits (63), Expect = 2.8
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 30 EEEEEEQEDSAFSDESADDNSSDEDE-TVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKD 88
EE+ S+ S +D DEDE + A+ + P +K A ++
Sbjct: 62 EEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSID----PELAREKFAELRA 117
Query: 89 MFNSTLEVAKFEGAKIRTVSGIRGQIKKALNK 120
+ T + K +G T ++ + +
Sbjct: 118 QYVVTRDTIKAKGRSHATAQEEILKLSEVFKQ 149
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.5
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 9/29 (31%)
Query: 111 RGQIKK---AL------NKPQGAFRATFE 130
+ +KK +L + P A +AT E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 27.0 bits (60), Expect = 7.8
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 14 ARRHKITSALAGLNSKEEEEEEQEDSAFSDESADDNSSDEDETVEPKVFYAEVTKKLKLT 73
R L + +EEEE E+ +S + +S+E++ + E+ +L
Sbjct: 331 TRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDK------ELADELSKA 384
Query: 74 GV 75
+
Sbjct: 385 HI 386
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 26.4 bits (57), Expect = 9.4
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 30 EEEEEEQEDSAFSDESADDNSSDEDETVEPK 60
EE+EEE ++ +E D D+D +
Sbjct: 370 EEDEEEADEDEDEEEDDDHGLEDDDGESAEE 400
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.368
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,760,983
Number of extensions: 213767
Number of successful extensions: 447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 21
Length of query: 259
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 167
Effective length of database: 4,133,061
Effective search space: 690221187
Effective search space used: 690221187
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)