BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5892
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 141/277 (50%), Gaps = 21/277 (7%)
Query: 63 VKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADL 122
V P ++ ++ G +H++ + + ++G GQ G G ++ + ++ L
Sbjct: 1 VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQ-----LSAL 55
Query: 123 EGEKIMDAVCGQDHTLFLTESG-KVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIV 181
+G +I+ CG DHT+ ++SG +VYS GWG G+ G G+ ++ TP ++ + G RI
Sbjct: 56 DGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHGIRIK 114
Query: 182 KLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQIS-TPRVLSQCKGVSRIVDVASGGS 240
+++ LAV+ +G+V WG ++ GQ+ + + S P+ + +G+ RI VA+G
Sbjct: 115 QIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKXVAAGAE 173
Query: 241 ACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGP 297
+ ++G +Y WG YG LG G + R + P + ST K + G
Sbjct: 174 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDR-LVPERVTST--------GGEKXSXVACGW 224
Query: 298 CTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV 334
+++ G LY +G ++YGQLG G +ED P K+
Sbjct: 225 RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKL 261
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 143/329 (43%), Gaps = 25/329 (7%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
+I + CG TV ++S +++ G +LG+ GN +L F +P+
Sbjct: 59 QIVSVTCGADHTVAYSQS---GXEVYSWGWGDFGRLGH------GNSSDL---FTPLPIK 106
Query: 63 VKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADL 122
H +IK +A G +H + +T ++G N GQ G G D + I
Sbjct: 107 ALH-GIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLG-----DTEDSLVPQKIQAF 160
Query: 123 EGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVK 182
EG +I G +HT +TE G +Y GWG G GLG ++ P V GE+
Sbjct: 161 EGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVT-STGGEKXSX 219
Query: 183 LSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSAC 242
++ ++VS G ++ +G S+YGQ+ +++ + S I ++ G
Sbjct: 220 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHT 279
Query: 243 TMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGA 302
L +G +Y WG+ GQ + + + + Q +F KV + G A
Sbjct: 280 XALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV------QVRFPDDQKVVQVSCGWRHTLA 333
Query: 303 ITNFGHLYMWGKNQYGQLGLGTVEDQPFP 331
+T +++ WG+ GQLG+G D+ FP
Sbjct: 334 VTERNNVFAWGRGTNGQLGIGESVDRNFP 362
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 17/222 (7%)
Query: 125 EKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLS 184
K++ G H++ L V S G G DGQ G G ++ +P + ++G +IV ++
Sbjct: 6 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA-LDGHQIVSVT 64
Query: 185 SAVDCVLAVSDKG-DVFGWGNSEYGQISE-SEMQISTPRVLSQCKGVSRIVDVASGGSAC 242
D +A S G +V+ WG ++G++ + + TP + G+ RI +A G S C
Sbjct: 65 CGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI-RIKQIACGDSHC 123
Query: 243 TMLNDEGLVYSWGY---GLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCT 299
+ EG V SWG G LG G + +L+P + Q +++ + AG
Sbjct: 124 LAVTXEGEVQSWGRNQNGQLGLG-----DTEDSLVPQKI----QAFEGIRIKXVAAGAEH 174
Query: 300 FGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV-AVGGQK 340
A+T G LY WG +YG LGLG D+ P +V + GG+K
Sbjct: 175 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 216
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 25/172 (14%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
K + +ACG+ T+ + S L+ G + QLG+ D LE + IP
Sbjct: 216 KXSXVACGWRHTISVSYSG----ALYTYGWSKYGQLGHGD-------LEDHL----IPHK 260
Query: 63 VKHPSTQ-IKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCH--NI 119
++ S I ++ G HT +T + + +G N FGQ G G ++ C +
Sbjct: 261 LEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQ-------CSPVQV 313
Query: 120 ADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLV 171
+ +K++ CG HTL +TE V++ G G +GQ G+G ++ P ++
Sbjct: 314 RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKII 365
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 286 PKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAV 336
P KV + AG A+ + + WG+ + GQLG G ED+P P +++
Sbjct: 4 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA 54
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 142/277 (51%), Gaps = 21/277 (7%)
Query: 63 VKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADL 122
V P ++ ++ G +H++ + + ++G GQ G G ++ + ++ L
Sbjct: 11 VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQ-----LSAL 65
Query: 123 EGEKIMDAVCGQDHTLFLTESG-KVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIV 181
+G +I+ CG DHT+ ++SG +VYS GWG G+ G G+ ++ TP ++ + G RI
Sbjct: 66 DGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHGIRIK 124
Query: 182 KLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQIS-TPRVLSQCKGVSRIVDVASGGS 240
+++ LAV+ +G+V WG ++ GQ+ + + S P+ + +G+ RI VA+G
Sbjct: 125 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAE 183
Query: 241 ACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGP 297
+ ++G +Y WG YG LG G + R + P + ST K+ + G
Sbjct: 184 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDR-LVPERVTST--------GGEKMSMVACGW 234
Query: 298 CTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV 334
+++ G LY +G ++YGQLG G +ED P K+
Sbjct: 235 RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKL 271
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 148/331 (44%), Gaps = 29/331 (8%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
+I + CG TV ++S ++++ G +LG+ GN +L F +P+
Sbjct: 69 QIVSVTCGADHTVAYSQS---GMEVYSWGWGDFGRLGH------GNSSDL---FTPLPIK 116
Query: 63 VKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADL 122
H +IK +A G +H + +T ++G N GQ G G D + I
Sbjct: 117 ALH-GIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-----DTEDSLVPQKIQAF 170
Query: 123 EGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVK 182
EG +I G +HT +TE G +Y GWG G GLG ++ P V GE++
Sbjct: 171 EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVT-STGGEKMSM 229
Query: 183 LSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQIS-TPRVLSQCKGVSRIVDVASGGSA 241
++ ++VS G ++ +G S+YGQ+ +++ P L + + SGG
Sbjct: 230 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS--NSFISQISGGWR 287
Query: 242 CTM-LNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTF 300
TM L +G +Y WG+ GQ + + + + Q +F KV + G
Sbjct: 288 HTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV------QVRFPDDQKVVQVSCGWRHT 341
Query: 301 GAITNFGHLYMWGKNQYGQLGLGTVEDQPFP 331
A+T +++ WG+ GQLG+G D+ FP
Sbjct: 342 LAVTERNNVFAWGRGTNGQLGIGESVDRNFP 372
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 17/222 (7%)
Query: 125 EKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLS 184
K++ G H++ L V S G G DGQ G G ++ +P + ++G +IV ++
Sbjct: 16 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA-LDGHQIVSVT 74
Query: 185 SAVDCVLAVSDKG-DVFGWGNSEYGQISE-SEMQISTPRVLSQCKGVSRIVDVASGGSAC 242
D +A S G +V+ WG ++G++ + + TP + G+ RI +A G S C
Sbjct: 75 CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI-RIKQIACGDSHC 133
Query: 243 TMLNDEGLVYSWGY---GLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCT 299
+ EG V SWG G LG G + +L+P + Q +++ + AG
Sbjct: 134 LAVTMEGEVQSWGRNQNGQLGLG-----DTEDSLVPQKI----QAFEGIRIKMVAAGAEH 184
Query: 300 FGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV-AVGGQK 340
A+T G LY WG +YG LGLG D+ P +V + GG+K
Sbjct: 185 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 226
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 26/238 (10%)
Query: 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPL 61
I+I +A G T T+ D L+G G LG D + P + +
Sbjct: 173 IRIKMVAAGAEHTAAVTEDGD----LYGWGWGRYGNLGLGDRTDRLVPERVTST------ 222
Query: 62 PVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIAD 121
++ +A G HTI ++ + +T+G + +GQ G G D + H +
Sbjct: 223 ----GGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG-----DLEDHLIPHKLEA 273
Query: 122 LEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIV 181
L I G HT+ LT GK+Y GW GQ G+G+ +Q +P VR + +++V
Sbjct: 274 LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP-DDQKVV 332
Query: 182 KLSSAVDCVLAVSDKGDVFGWGNSEYGQISESE-MQISTPRVLSQCKGVSRIVDVASG 238
++S LAV+++ +VF WG GQ+ E + + P+++ VD ASG
Sbjct: 333 QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS-----VDGASG 385
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 286 PKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAV 336
P KV + AG A+ + + WG+ + GQLG G ED+P P +++
Sbjct: 14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA 64
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 141/274 (51%), Gaps = 21/274 (7%)
Query: 66 PSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGE 125
P ++ ++ G +H++ + + ++G GQ G G ++ + ++ L+G
Sbjct: 2 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQ-----LSALDGH 56
Query: 126 KIMDAVCGQDHTLFLTESG-KVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLS 184
+I+ CG DHT+ ++SG +VYS GWG G+ G G+ ++ TP ++ + G RI +++
Sbjct: 57 QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHGIRIKQIA 115
Query: 185 SAVDCVLAVSDKGDVFGWGNSEYGQISESEMQIS-TPRVLSQCKGVSRIVDVASGGSACT 243
LAV+ +G+V WG ++ GQ+ + + S P+ + +G+ RI VA+G
Sbjct: 116 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTA 174
Query: 244 MLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTF 300
+ ++G +Y WG YG LG G + R + P + ST K+ + G
Sbjct: 175 AVTEDGDLYGWGWGRYGNLGLGDRTDR-LVPERVTST--------GGEKMSMVACGWRHT 225
Query: 301 GAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV 334
+++ G LY +G ++YGQLG G +ED P K+
Sbjct: 226 ISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKL 259
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 145/329 (44%), Gaps = 25/329 (7%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
+I + CG TV ++S ++++ G +LG+ GN +L F +P+
Sbjct: 57 QIVSVTCGADHTVAYSQS---GMEVYSWGWGDFGRLGH------GNSSDL---FTPLPIK 104
Query: 63 VKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADL 122
H +IK +A G +H + +T ++G N GQ G G D + I
Sbjct: 105 ALH-GIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-----DTEDSLVPQKIQAF 158
Query: 123 EGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVK 182
EG +I G +HT +TE G +Y GWG G GLG ++ P V GE++
Sbjct: 159 EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVT-STGGEKMSM 217
Query: 183 LSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSAC 242
++ ++VS G ++ +G S+YGQ+ +++ + S I ++ G
Sbjct: 218 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHT 277
Query: 243 TMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGA 302
L +G +Y WG+ GQ + + + + Q +F KV + G A
Sbjct: 278 MALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV------QVRFPDDQKVVQVSCGWRHTLA 331
Query: 303 ITNFGHLYMWGKNQYGQLGLGTVEDQPFP 331
+T +++ WG+ GQLG+G D+ FP
Sbjct: 332 VTERNNVFAWGRGTNGQLGIGESVDRNFP 360
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 17/222 (7%)
Query: 125 EKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLS 184
K++ G H++ L V S G G DGQ G G ++ +P + ++G +IV ++
Sbjct: 4 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA-LDGHQIVSVT 62
Query: 185 SAVDCVLAVSDKG-DVFGWGNSEYGQISE-SEMQISTPRVLSQCKGVSRIVDVASGGSAC 242
D +A S G +V+ WG ++G++ + + TP + G+ RI +A G S C
Sbjct: 63 CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI-RIKQIACGDSHC 121
Query: 243 TMLNDEGLVYSWGY---GLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCT 299
+ EG V SWG G LG G + +L+P + Q +++ + AG
Sbjct: 122 LAVTMEGEVQSWGRNQNGQLGLG-----DTEDSLVPQKI----QAFEGIRIKMVAAGAEH 172
Query: 300 FGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV-AVGGQK 340
A+T G LY WG +YG LGLG D+ P +V + GG+K
Sbjct: 173 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 214
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 26/238 (10%)
Query: 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPL 61
I+I +A G T T+ D L+G G LG D + P + +
Sbjct: 161 IRIKMVAAGAEHTAAVTEDGD----LYGWGWGRYGNLGLGDRTDRLVPERVTST------ 210
Query: 62 PVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIAD 121
++ +A G HTI ++ + +T+G + +GQ G G D + H +
Sbjct: 211 ----GGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG-----DLEDHLIPHKLEA 261
Query: 122 LEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIV 181
L I G HT+ LT GK+Y GW GQ G+G+ +Q +P VR + +++V
Sbjct: 262 LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP-DDQKVV 320
Query: 182 KLSSAVDCVLAVSDKGDVFGWGNSEYGQISESE-MQISTPRVLSQCKGVSRIVDVASG 238
++S LAV+++ +VF WG GQ+ E + + P+++ VD ASG
Sbjct: 321 QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS-----VDGASG 373
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 286 PKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAV 336
P KV + AG A+ + + WG+ + GQLG G ED+P P +++
Sbjct: 2 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA 52
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 141/274 (51%), Gaps = 21/274 (7%)
Query: 66 PSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGE 125
P ++ ++ G +H++ + + ++G GQ G G ++ + ++ L+G
Sbjct: 2 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQ-----LSALDGH 56
Query: 126 KIMDAVCGQDHTLFLTESG-KVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLS 184
+I+ CG DHT+ ++SG +VYS GWG G+ G G+ ++ TP ++ + G RI +++
Sbjct: 57 QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHGIRIKQIA 115
Query: 185 SAVDCVLAVSDKGDVFGWGNSEYGQISESEMQIS-TPRVLSQCKGVSRIVDVASGGSACT 243
LAV+ +G+V WG ++ GQ+ + + S P+ + +G+ RI VA+G
Sbjct: 116 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTA 174
Query: 244 MLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTF 300
+ ++G +Y WG YG LG G + R + P + ST K+ + G
Sbjct: 175 AVTEDGDLYGWGWGRYGNLGLGDRTDR-LVPERVTST--------GGEKMSMVACGWRHT 225
Query: 301 GAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV 334
+++ G LY +G ++YGQLG G +ED P K+
Sbjct: 226 ISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKL 259
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 148/331 (44%), Gaps = 29/331 (8%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
+I + CG TV ++S ++++ G +LG+ GN +L F +P+
Sbjct: 57 QIVSVTCGADHTVAYSQS---GMEVYSWGWGDFGRLGH------GNSSDL---FTPLPIK 104
Query: 63 VKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADL 122
H +IK +A G +H + +T ++G N GQ G G D + I
Sbjct: 105 ALH-GIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-----DTEDSLVPQKIQAF 158
Query: 123 EGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVK 182
EG +I G +HT +TE G +Y GWG G GLG ++ P V GE++
Sbjct: 159 EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVT-STGGEKMSM 217
Query: 183 LSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQIS-TPRVLSQCKGVSRIVDVASGGSA 241
++ ++VS G ++ +G S+YGQ+ +++ P L + + SGG
Sbjct: 218 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS--NSFISQISGGFR 275
Query: 242 CTM-LNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTF 300
TM L +G +Y WG+ GQ + + + + Q +F KV + G
Sbjct: 276 HTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV------QVRFPDDQKVVQVSCGWRHT 329
Query: 301 GAITNFGHLYMWGKNQYGQLGLGTVEDQPFP 331
A+T +++ WG+ GQLG+G D+ FP
Sbjct: 330 LAVTERNNVFAWGRGTNGQLGIGESVDRNFP 360
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 17/222 (7%)
Query: 125 EKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLS 184
K++ G H++ L V S G G DGQ G G ++ +P + ++G +IV ++
Sbjct: 4 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA-LDGHQIVSVT 62
Query: 185 SAVDCVLAVSDKG-DVFGWGNSEYGQISE-SEMQISTPRVLSQCKGVSRIVDVASGGSAC 242
D +A S G +V+ WG ++G++ + + TP + G+ RI +A G S C
Sbjct: 63 CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI-RIKQIACGDSHC 121
Query: 243 TMLNDEGLVYSWGY---GLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCT 299
+ EG V SWG G LG G + +L+P + Q +++ + AG
Sbjct: 122 LAVTMEGEVQSWGRNQNGQLGLG-----DTEDSLVPQKI----QAFEGIRIKMVAAGAEH 172
Query: 300 FGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV-AVGGQK 340
A+T G LY WG +YG LGLG D+ P +V + GG+K
Sbjct: 173 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 214
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 25/172 (14%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
K++ +ACG+ T+ + S L+ G + QLG+ D LE + IP
Sbjct: 214 KMSMVACGWRHTISVSYSG----ALYTYGWSKYGQLGHGD-------LEDHL----IPHK 258
Query: 63 VKHPSTQ-IKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCH--NI 119
++ S I ++ G HT+ +T + + +G N FGQ G G ++ C +
Sbjct: 259 LEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQ-------CSPVQV 311
Query: 120 ADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLV 171
+ +K++ CG HTL +TE V++ G G +GQ G+G ++ P ++
Sbjct: 312 RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKII 363
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 286 PKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAV 336
P KV + AG A+ + + WG+ + GQLG G ED+P P +++
Sbjct: 2 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA 52
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 113/275 (41%), Gaps = 24/275 (8%)
Query: 70 IKHLA--TGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKI 127
IK +A +G H + ++ +++G G+ G G D I L G ++
Sbjct: 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRP-----RVIESLRGIEV 161
Query: 128 MDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLS--S 185
+D G H+ +T +G +Y+ G G G+ G +Q P LV ++G R+V ++ S
Sbjct: 162 VDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA-LQGHRVVDIACGS 220
Query: 186 AVDCVLAVSDKGDVFGWGNSEYGQISESEMQ-ISTPRVLSQCKGVSRIVDVASGGSACTM 244
L ++D V+ WG+ +YG++ P + G+ +V V G
Sbjct: 221 GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLG-VVKVECGSQFSVA 279
Query: 245 LNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFG 301
L G VY+WG Y LG G +P Q Q KV ++ G
Sbjct: 280 LTKSGAVYTWGKGDYHRLGHGSD-DHVRRPR--------QVQGLQGKKVIAIATGSLHCV 330
Query: 302 AITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAV 336
T G +Y WG N GQLG GT P VA
Sbjct: 331 CCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAA 365
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 122/245 (49%), Gaps = 23/245 (9%)
Query: 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPL 61
I++ D+A G + T + D L+ G +LG+ D + P +LV +
Sbjct: 159 IEVVDVAAGGAHSACVTAAGD----LYTWGKGRYGRLGHSDSEDQLKP-KLVEALQ---- 209
Query: 62 PVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIAD 121
H I +G A T+ +TD++ +++G+ +G+ GRG G I
Sbjct: 210 --GHRVVDIA-CGSGDAQTLCLTDDDTVWSWGDGDYGKLGRG-----GSDGCKVPMKIDS 261
Query: 122 LEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIV 181
L G ++ CG ++ LT+SG VY+ G G + G G ++ P V+G ++G++++
Sbjct: 262 LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG-LQGKKVI 320
Query: 182 KLSS-AVDCVLAVSDKGDVFGWGNSEYGQISESEMQ-ISTPRVLSQCKGVSRIVDVASGG 239
+++ ++ CV D G+V+ WG+++ GQ+ + I PR+++ +G + V+ + G
Sbjct: 321 AIATGSLHCVCCTED-GEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQG--KKVNRVACG 377
Query: 240 SACTM 244
SA T+
Sbjct: 378 SAHTL 382
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 125/252 (49%), Gaps = 22/252 (8%)
Query: 90 FTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLF-LTESGKVYS 148
+ +G+N GQ G ++ + C +A L +++ G + TLF +T GK+Y+
Sbjct: 23 YGWGHNHRGQLGG--IEGAKVKVPTPCEALATLRPVQLI----GGEQTLFAVTADGKLYA 76
Query: 149 CGWGADGQTGLGHLNNQETPCLVRGEIEGERI--VKLSSAVDCVLAVSDKGDVFGWGNSE 206
G+GA G+ G+G + TP L+ I+ I V ++S LA+S +G+V+ WG +E
Sbjct: 77 TGYGAGGRLGIGGTESVSTPTLLE-SIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAE 135
Query: 207 YGQISESEMQ-ISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWG---YGLLGQG 262
G++ PRV+ +G+ +VDVA+GG+ + G +Y+WG YG LG
Sbjct: 136 DGKLGHGNRSPCDRPRVIESLRGI-EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 194
Query: 263 PKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGL 322
+ +KP L+ + L G + + +G +T+ ++ WG YG+LG
Sbjct: 195 DSEDQ-LKPKLVEA-LQGHRVVDI-----ACGSGDAQTLCLTDDDTVWSWGDGDYGKLGR 247
Query: 323 GTVEDQPFPLKV 334
G + P+K+
Sbjct: 248 GGSDGCKVPMKI 259
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 95/203 (46%), Gaps = 23/203 (11%)
Query: 138 LFLTESGKVYSCGWGADGQTGLGHLNNQE----TPCLVRGEIEGERIVKLSSAVDCVLAV 193
L+ SG +Y GWG + + LG + + TPC + R V+L + AV
Sbjct: 14 LYFQGSGTIY--GWGHNHRGQLGGIEGAKVKVPTPCEALATL---RPVQLIGGEQTLFAV 68
Query: 194 SDKGDVFGWGNSEYGQISESEMQ-ISTPRVLSQCKGV-SRIVDVASGGSACTMLNDEGLV 251
+ G ++ G G++ + +STP +L + V + V V SGG C L+ EG V
Sbjct: 69 TADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEV 128
Query: 252 YSWGY---GLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGH 308
YSWG G LG G + S +P +I S L G +V + AG +T G
Sbjct: 129 YSWGEAEDGKLGHGNR-SPCDRPRVIES-LRG-------IEVVDVAAGGAHSACVTAAGD 179
Query: 309 LYMWGKNQYGQLGLGTVEDQPFP 331
LY WGK +YG+LG EDQ P
Sbjct: 180 LYTWGKGRYGRLGHSDSEDQLKP 202
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 83/193 (43%), Gaps = 20/193 (10%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
++ DIACG G + D + +G G G D ++P+
Sbjct: 212 RVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG-------------CKVPMK 258
Query: 63 VKHPS-TQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIAD 121
+ + + + G ++ +T + +T+G + + G G +D+ + +
Sbjct: 259 IDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHG---SDDHVRR--PRQVQG 313
Query: 122 LEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIV 181
L+G+K++ G H + TE G+VY+ G +GQ G G N + P LV ++G+++
Sbjct: 314 LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLV-AALQGKKVN 372
Query: 182 KLSSAVDCVLAVS 194
+++ LA S
Sbjct: 373 RVACGSAHTLAWS 385
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 100/210 (47%), Gaps = 16/210 (7%)
Query: 125 EKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIE-GERIVKL 183
E ++ A G HT+ L++SG+VYS +G + + LG + E +V G++E E++V++
Sbjct: 48 EDVVQAEAGGMHTVCLSKSGQVYS--FGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQV 105
Query: 184 SSAVDCVLAVSDKGDVFGWGN--SEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSA 241
S+ A++D G VF WG+ G I E + V Q + +V VASG
Sbjct: 106 SAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLE-PMKKSMVPVQVQLDVPVVKVASGNDH 164
Query: 242 CTMLNDEGLVYSWGYGLLGQGPKV---------SRSMKPTLIPS-TLFGQHQFNPKSKVE 291
ML +G +Y+ G G GQ +V + ++ L+P + + +
Sbjct: 165 LVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQ 224
Query: 292 SLIAGPCTFGAITNFGHLYMWGKNQYGQLG 321
G AI++ GH+Y +G + Y QLG
Sbjct: 225 DAFCGAYFTFAISHEGHVYGFGLSNYHQLG 254
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 136/336 (40%), Gaps = 48/336 (14%)
Query: 20 SKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAH 79
SK + FGC N + LG D +G+ E+V V + ++ ++ G +H
Sbjct: 64 SKSGQVYSFGC--NDEGALG-RDTSVEGS--EMVPGKVEL-------QEKVVQVSAGDSH 111
Query: 80 TIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLF 139
T +TD+ F +G SF + G++ + K L+ ++ G DH +
Sbjct: 112 TAALTDDGRVFLWG--SF-RDNNGVIGLLEPMKKSMVPVQVQLD-VPVVKVASGNDHLVM 167
Query: 140 LTESGKVYSCGWGADGQTGL-----------GHLNNQETPCLVRGEIEGER-IVKLSSAV 187
LT G +Y+ G G GQ G L P V + G R V+ A
Sbjct: 168 LTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAF 227
Query: 188 DC----VLAVSDKGDVFGWGNSEYGQI-SESEMQISTPRVLSQCKGVSRIVDVASGGSAC 242
C A+S +G V+G+G S Y Q+ + P+ L+ K ++ SGG
Sbjct: 228 -CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHH 286
Query: 243 TM-LNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPC 298
T+ ++ EG YS G YG LG G PTLI V S+ G
Sbjct: 287 TVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL----------PAVSSVACGAS 336
Query: 299 TFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV 334
A+T G ++ WG QLG G ED P+++
Sbjct: 337 VGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEM 372
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 126/296 (42%), Gaps = 33/296 (11%)
Query: 60 PLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNI 119
P V P ++ A G HT+ ++ + ++FG N G GR + +G
Sbjct: 41 PALVSIPEDVVQAEAGG-MHTVCLSKSGQVYSFGCNDEGALGR----DTSVEGSEMVPGK 95
Query: 120 ADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQE---TPCLVRGEIE 176
+L+ EK++ G HT LT+ G+V+ G D +G L + P V+ ++
Sbjct: 96 VELQ-EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVP 154
Query: 177 GERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQI------------SESEMQISTPR-VL 223
+VK++S D ++ ++ GD++ G E GQ+ + ++ P+ V+
Sbjct: 155 ---VVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVM 211
Query: 224 SQCKGVS---RIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFG 280
+ +G R D G ++ EG VY G+GL + + IP L
Sbjct: 212 LKSRGSRGHVRFQDAFCGAYFTFAISHEGHVY--GFGLSNYHQLGTPGTESCFIPQNLT- 268
Query: 281 QHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGT-VEDQPFPLKVA 335
+ + KS V G + + G Y G+ +YG+LGLG E++ P ++
Sbjct: 269 SFKNSTKSWV-GFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS 323
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 19/192 (9%)
Query: 136 HTLFLTESGKVYSCGWGADGQTGLG-HLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVS 194
H TE G V + G G GQ GLG ++ ++ P LV E +V+ + + +S
Sbjct: 8 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP---EDVVQAEAGGMHTVCLS 64
Query: 195 DKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSW 254
G V+ +G ++ G + + V + + ++V V++G S L D+G V+ W
Sbjct: 65 KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLW 124
Query: 255 GY-----GLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHL 309
G G++G + +SM P + + P KV S G +T G L
Sbjct: 125 GSFRDNNGVIGLLEPMKKSMVPVQVQLDV-------PVVKVAS---GNDHLVMLTADGDL 174
Query: 310 YMWGKNQYGQLG 321
Y G + GQLG
Sbjct: 175 YTLGCGEQGQLG 186
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 133 GQDHTLFLTESGKVYSCGWGADGQTGLGH-LNNQETPCLVRGEIEGERIVKLSSA---VD 188
GQ HT+ + GK YS G G+ GLG + P L+ R+ +SS
Sbjct: 283 GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLI------SRLPAVSSVACGAS 336
Query: 189 CVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSR--IVDVASGGSACTML 245
AV+ G VF WG Q+ + + + V K + ++ V+SGG +L
Sbjct: 337 VGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLL 395
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 100/210 (47%), Gaps = 16/210 (7%)
Query: 125 EKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIE-GERIVKL 183
E ++ A G HT+ L++SG+VYS +G + + LG + E +V G++E E++V++
Sbjct: 59 EDVVQAEAGGMHTVCLSKSGQVYS--FGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQV 116
Query: 184 SSAVDCVLAVSDKGDVFGWGN--SEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSA 241
S+ A++D G VF WG+ G I E + V Q + +V VASG
Sbjct: 117 SAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLE-PMKKSMVPVQVQLDVPVVKVASGNDH 175
Query: 242 CTMLNDEGLVYSWGYGLLGQGPKV---------SRSMKPTLIPS-TLFGQHQFNPKSKVE 291
ML +G +Y+ G G GQ +V + ++ L+P + + +
Sbjct: 176 LVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQ 235
Query: 292 SLIAGPCTFGAITNFGHLYMWGKNQYGQLG 321
G AI++ GH+Y +G + Y QLG
Sbjct: 236 DAFCGAYFTFAISHEGHVYGFGLSNYHQLG 265
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 136/336 (40%), Gaps = 48/336 (14%)
Query: 20 SKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAH 79
SK + FGC N + LG D +G+ E+V V + ++ ++ G +H
Sbjct: 75 SKSGQVYSFGC--NDEGALG-RDTSVEGS--EMVPGKVEL-------QEKVVQVSAGDSH 122
Query: 80 TIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLF 139
T +TD+ F +G SF + G++ + K L+ ++ G DH +
Sbjct: 123 TAALTDDGRVFLWG--SF-RDNNGVIGLLEPMKKSMVPVQVQLD-VPVVKVASGNDHLVM 178
Query: 140 LTESGKVYSCGWGADGQTGL-----------GHLNNQETPCLVRGEIEGER-IVKLSSAV 187
LT G +Y+ G G GQ G L P V + G R V+ A
Sbjct: 179 LTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAF 238
Query: 188 DC----VLAVSDKGDVFGWGNSEYGQI-SESEMQISTPRVLSQCKGVSRIVDVASGGSAC 242
C A+S +G V+G+G S Y Q+ + P+ L+ K ++ SGG
Sbjct: 239 -CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHH 297
Query: 243 TM-LNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPC 298
T+ ++ EG YS G YG LG G PTLI V S+ G
Sbjct: 298 TVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL----------PAVSSVACGAS 347
Query: 299 TFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV 334
A+T G ++ WG QLG G ED P+++
Sbjct: 348 VGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEM 383
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 126/296 (42%), Gaps = 33/296 (11%)
Query: 60 PLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNI 119
P V P ++ A G HT+ ++ + ++FG N G GR + +G
Sbjct: 52 PALVSIPEDVVQAEAGG-MHTVCLSKSGQVYSFGCNDEGALGR----DTSVEGSEMVPGK 106
Query: 120 ADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQE---TPCLVRGEIE 176
+L+ EK++ G HT LT+ G+V+ G D +G L + P V+ ++
Sbjct: 107 VELQ-EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVP 165
Query: 177 GERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQI------------SESEMQISTPR-VL 223
+VK++S D ++ ++ GD++ G E GQ+ + ++ P+ V+
Sbjct: 166 ---VVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVM 222
Query: 224 SQCKGVS---RIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFG 280
+ +G R D G ++ EG VY G+GL + + IP L
Sbjct: 223 LKSRGSRGHVRFQDAFCGAYFTFAISHEGHVY--GFGLSNYHQLGTPGTESCFIPQNLT- 279
Query: 281 QHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGT-VEDQPFPLKVA 335
+ + KS V G + + G Y G+ +YG+LGLG E++ P ++
Sbjct: 280 SFKNSTKSWV-GFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS 334
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 19/192 (9%)
Query: 136 HTLFLTESGKVYSCGWGADGQTGLG-HLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVS 194
H TE G V + G G GQ GLG ++ ++ P LV E +V+ + + +S
Sbjct: 19 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP---EDVVQAEAGGMHTVCLS 75
Query: 195 DKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSW 254
G V+ +G ++ G + + V + + ++V V++G S L D+G V+ W
Sbjct: 76 KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLW 135
Query: 255 GY-----GLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHL 309
G G++G + +SM P + + P KV S G +T G L
Sbjct: 136 GSFRDNNGVIGLLEPMKKSMVPVQVQLDV-------PVVKVAS---GNDHLVMLTADGDL 185
Query: 310 YMWGKNQYGQLG 321
Y G + GQLG
Sbjct: 186 YTLGCGEQGQLG 197
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 133 GQDHTLFLTESGKVYSCGWGADGQTGLGH-LNNQETPCLVRGEIEGERIVKLSSA---VD 188
GQ HT+ + GK YS G G+ GLG + P L+ R+ +SS
Sbjct: 294 GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLI------SRLPAVSSVACGAS 347
Query: 189 CVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSR--IVDVASGGSACTML 245
AV+ G VF WG Q+ + + + V K + ++ V+SGG +L
Sbjct: 348 VGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLL 406
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 113/289 (39%), Gaps = 28/289 (9%)
Query: 62 PVKHPSTQIKHLATG-RAHTIVITDNEGAFTFGNN---SFG--QCGRGIVQEEDYQGKWF 115
P K P LA G + + TDN F N ++G +C GI+ YQ K
Sbjct: 133 PAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGF--YQDKIK 190
Query: 116 CHN----IADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLV 171
+ I+ G+DH LFL E G V++ G G Q G + L
Sbjct: 191 IQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLD 250
Query: 172 RGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESE-----MQISTPRVLSQC 226
+ ++S + A++ + WG +++GQ SE ++ P+ L+
Sbjct: 251 PRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP 310
Query: 227 KGVSRIVDVASGGSACTMLNDEGLVYSWG-YGLLGQGPKVSRSMKPTLIPSTLFGQHQ-- 283
V I +A+G +L+ +G +YS G + G + + P + G+ +
Sbjct: 311 DNVV-IRSIAAGEHHSLILSQDGDLYSCGRLDMFEVG--IPKDNLPEYTYKDVHGKARAV 367
Query: 284 -----FNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVED 327
N K +S+ AG A+ G Y WG + +GLG ED
Sbjct: 368 PLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFED 416
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 30/223 (13%)
Query: 68 TQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRG-----------------------I 104
+I A G HT+ + + +++G N G GR +
Sbjct: 67 AKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDL 126
Query: 105 VQEEDYQGKWFCHNIADL-EGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLN 163
+ E K + L EG K++ + + L +G+VY+ G + LG
Sbjct: 127 NELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQ 186
Query: 164 N----QETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQIST 219
+ Q+TP V IV+L+ D +L + ++G VF WGN + Q+ M+
Sbjct: 187 DKIKIQKTPWKVP-TFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFR 245
Query: 220 PRVLS-QCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQ 261
+ L + G+ + +ASG + C L + + SWG GQ
Sbjct: 246 LKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQ 288
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 55/231 (23%)
Query: 60 PLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFC--H 117
P ++H +K++A+G H +T + ++G N FGQCG V E+ G
Sbjct: 253 PFGLRH----VKYIASGENHCFALTKDNKLVSWGLNQFGQCG---VSEDVEDGALVTKPK 305
Query: 118 NIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEG 177
+A + I G+ H+L L++ G +YSCG + G+ N P ++ G
Sbjct: 306 RLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDN---LPEYTYKDVHG 362
Query: 178 E-RIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVA 236
+ R V L + ++ V + VA
Sbjct: 363 KARAVPLPTKLN---------------------------------------NVPKFKSVA 383
Query: 237 SGGSACTMLNDEGLVYSWGYG---LLGQGPKVSRSMKPTLIPSTLFGQHQF 284
+G + G+ YSWG+G +G GP + PT I +T H
Sbjct: 384 AGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNI 434
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 198 DVFGWGNSEYGQIS----ESEMQISTPRVLSQC-KGVSRIVDVASGGSACTMLNDEGLVY 252
D+F WG ++ ++ PR+ + ++I+ A GG L++E V+
Sbjct: 30 DIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVW 89
Query: 253 SWG 255
SWG
Sbjct: 90 SWG 92
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 16/145 (11%)
Query: 27 LFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITDN 86
++ GLN+ QL + KG L P+K I+H+A G+ HT+++T +
Sbjct: 264 IWATGLNNFKQLAHE---TKGKEFALT--------PIKTELKDIRHIAGGQHHTVILTTD 312
Query: 87 EGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKV 146
G +G+ G G V++ + I EKI+ CG+ + +T GK+
Sbjct: 313 LKCSVVGRPEYGRLGLGDVKDVVEK-----PTIVKKLTEKIVSVGCGEVCSYAVTIDGKL 367
Query: 147 YSCGWGADGQTGLGHLNNQETPCLV 171
YS G G + Q G+G +++ P +V
Sbjct: 368 YSWGSGVNNQLGVGDGDDELEPIVV 392
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 140/353 (39%), Gaps = 63/353 (17%)
Query: 6 DIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKH 65
DI+ G +V TKS D + FGC N + LG D + G+ + + I LP K
Sbjct: 79 DISAGGMHNLVLTKSGD--IYSFGC--NDEGALG-RDTSEDGSESKPDL----IDLPGKA 129
Query: 66 PSTQIKHLATGRAHTIVITDNEGAFTFGN--NSFGQCGRGIVQEEDYQGKWFCHNIADLE 123
++ G +H+ + ++ F +G+ +S G G I + I +E
Sbjct: 130 LC-----ISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTP-------IDLME 177
Query: 124 GEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGE-IEGERIVK 182
G G DH + LT +GKV++ G GQ LG L+ + + GE G+R
Sbjct: 178 GTVCCSIASGADHLVILTTAGKVFTVGCAEQGQ--LGRLSERS----ISGEGRRGKR--D 229
Query: 183 LSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQI-------STPRVLSQCKG------- 228
L ++ + + W + + ES+ Q+ + ++ + KG
Sbjct: 230 LLRPTQLIITRAKPFEAI-WATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTP 288
Query: 229 ----VSRIVDVASGGSACTMLNDE---GLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQ 281
+ I +A G +L + +V YG LG G KPT++
Sbjct: 289 IKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKL---- 344
Query: 282 HQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV 334
K+ S+ G A+T G LY WG QLG+G +D+ P+ V
Sbjct: 345 -----TEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 31/243 (12%)
Query: 93 GNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWG 152
GN GQ G G ED + +A + +D G H L LT+SG +YS G
Sbjct: 49 GNGDVGQLGLG----EDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFGCN 102
Query: 153 ADGQTG--LGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGN--SEYG 208
+G G ++ P L+ + I S C+L + G VF WG+ +G
Sbjct: 103 DEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLL---EDGRVFAWGSFRDSHG 159
Query: 209 QISES-EMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVS- 266
+ + + TP L + + +ASG +L G V++ G GQ ++S
Sbjct: 160 NMGLTIDGNKRTPIDLMEG---TVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSE 216
Query: 267 --------RSMKPTLIPSTLFGQHQFNPKSKVESLIA-GPCTFGAITNFGHLYMWGKNQY 317
R + L P+ L E++ A CTF + ++ G N +
Sbjct: 217 RSISGEGRRGKRDLLRPTQLI----ITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNF 272
Query: 318 GQL 320
QL
Sbjct: 273 KQL 275
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 144 GKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCV---------LAVS 194
G V CG G GQ GLG +E +R+ ++ D V L ++
Sbjct: 43 GNVLVCGNGDVGQLGLGE-----------DILERKRLSPVAGIPDAVDISAGGMHNLVLT 91
Query: 195 DKGDVFGWGNSEYGQISE--SEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVY 252
GD++ +G ++ G + SE + L G + + SAC + ++G V+
Sbjct: 92 KSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLL--EDGRVF 149
Query: 253 SWG 255
+WG
Sbjct: 150 AWG 152
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 101/277 (36%), Gaps = 72/277 (25%)
Query: 58 RIPLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCH 117
++ +P S + +A G H++ + D E +G N GQ V E G
Sbjct: 56 QLTMPAATQS-GVDAIAAGNYHSLALKDGE-VIAWGGNEDGQT---TVPAEARSG----- 105
Query: 118 NIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEG 177
+DA+ + + GKV + G +DGQT P +
Sbjct: 106 ----------VDAIAAGAWASYALKDGKVIAWGDDSDGQT--------TVPAEAQ----- 142
Query: 178 ERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQIS-ESEMQISTPRVLSQCKGVSRIVDVA 236
+ L V LAV + G V WG++ +GQ + +E Q S + DVA
Sbjct: 143 SGVTALDGGVYTALAVKNGG-VIAWGDNYFGQTTVPAEAQ-------------SGVDDVA 188
Query: 237 SGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAG 296
G L D G V +WG K T +P+ S V ++ +G
Sbjct: 189 GGIFHSLALKD-GKVIAWG----------DNRYKQTTVPTEAL--------SGVSAIASG 229
Query: 297 PCTFGAITNFGHLYMWGKNQYG----QLGLGTVEDQP 329
A+ N G + WG ++ Q G+ ++E P
Sbjct: 230 EWYSLALKN-GKVIAWGSSRTAPSSVQSGVSSIEAGP 265
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 101/277 (36%), Gaps = 72/277 (25%)
Query: 58 RIPLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCH 117
++ +P S + +A G H++ + D E +G N GQ V E G
Sbjct: 54 QLTMPAATQS-GVDAIAAGNYHSLALKDGE-VIAWGGNEDGQT---TVPAEARSG----- 103
Query: 118 NIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEG 177
+DA+ + + GKV + G +DGQT P +
Sbjct: 104 ----------VDAIAAGAWASYALKDGKVIAWGDDSDGQT--------TVPAEAQ----- 140
Query: 178 ERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQIS-ESEMQISTPRVLSQCKGVSRIVDVA 236
+ L V LAV + G V WG++ +GQ + +E Q S + DVA
Sbjct: 141 SGVTALDGGVYTALAVKNGG-VIAWGDNYFGQTTVPAEAQ-------------SGVDDVA 186
Query: 237 SGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAG 296
G L D G V +WG K T +P+ S V ++ +G
Sbjct: 187 GGIFHSLALKD-GKVIAWG----------DNRYKQTTVPTEAL--------SGVSAIASG 227
Query: 297 PCTFGAITNFGHLYMWGKNQYG----QLGLGTVEDQP 329
A+ N G + WG ++ Q G+ ++E P
Sbjct: 228 EWYSLALKN-GKVIAWGSSRTAPSSVQSGVSSIEAGP 263
>pdb|2XD4|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 73 LATGRAHTIVITDNEGAF----TFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIM 128
LA G+ T+ +T+ E + FG +V EE G+ F +A ++GEK+
Sbjct: 147 LAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLSGEEFSL-MAFVKGEKVY 205
Query: 129 DAVCGQDH 136
V QDH
Sbjct: 206 PMVIAQDH 213
>pdb|2XCL|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 73 LATGRAHTIVITDNEGAF----TFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIM 128
LA G+ T+ T+ E + FG +V EE G+ F A ++GEK+
Sbjct: 147 LAAGKGVTVAXTEEEAIACLHDFLEDEKFGDASASVVIEEYLSGEEFSLX-AFVKGEKVY 205
Query: 129 DAVCGQDH 136
V QDH
Sbjct: 206 PXVIAQDH 213
>pdb|3TX8|A Chain A, Crystal Structure Of A Succinyl-Diaminopimelate
Desuccinylase (Arge) From Corynebacterium Glutamicum
Atcc 13032 At 2.97 A Resolution
Length = 369
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 50/148 (33%), Gaps = 28/148 (18%)
Query: 47 GNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITDNEGA--FTFGNNSFGQCGRGI 104
G+P+ L V IP PS Q K +A + + G F F NN + RG+
Sbjct: 13 GDPIVLTQRLVDIP----SPSGQEKQIADEIEDALRNLNLPGVEVFRFNNNVLARTNRGL 68
Query: 105 VQEEDYQGKWFCHNIADLEGEKIMDAV---CGQD----------HTLFLTESGK------ 145
G IAD ++ D + CG HT +
Sbjct: 69 ASRVXLAGHIDTVPIADNLPSRVEDGIXYGCGTVDXKSGLAVYLHTFATLATSTELKHDL 128
Query: 146 ---VYSCGWGADGQTGLGHLNNQETPCL 170
Y C AD GLGH+ ++ L
Sbjct: 129 TLIAYECEEVADHLNGLGHIRDEHPEWL 156
>pdb|1DBZ|A Chain A, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|B Chain B, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|C Chain C, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|D Chain D, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
Length = 357
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 118 NIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEG 177
NI++L G + + G+D S +V+S + G+TG+ ++ P V G
Sbjct: 60 NISNLTGTQGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSG 119
Query: 178 ERIVKL-----SSAVDCVLAVSDKGDVFG 201
IV SS +D ++ G +FG
Sbjct: 120 NYIVVFDPLDGSSNLDAAVST---GSIFG 145
>pdb|1D9Q|A Chain A, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|B Chain B, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|C Chain C, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|D Chain D, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1DCU|A Chain A, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|B Chain B, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|C Chain C, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|D Chain D, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
Length = 357
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 118 NIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEG 177
NI++L G + + G+D S +V+S + G+TG+ ++ P V G
Sbjct: 60 NISNLTGTQGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSG 119
Query: 178 ERIVKL-----SSAVDCVLAVSDKGDVFG 201
IV SS +D ++ G +FG
Sbjct: 120 NYIVVFDPLDGSSNLDAAVST---GSIFG 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,853,638
Number of Sequences: 62578
Number of extensions: 461457
Number of successful extensions: 1023
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 77
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)