Query psy5892
Match_columns 340
No_of_seqs 162 out of 1836
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 20:55:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 5.4E-47 1.2E-51 333.2 25.9 316 2-335 104-440 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 1.5E-43 3.2E-48 311.5 24.3 293 27-335 70-389 (476)
3 KOG1427|consensus 100.0 1.1E-40 2.4E-45 275.9 16.5 301 3-336 57-377 (443)
4 KOG1427|consensus 100.0 4.6E-35 9.9E-40 242.7 15.9 275 3-306 111-399 (443)
5 KOG0783|consensus 100.0 8.6E-28 1.9E-32 222.4 14.4 270 26-317 143-418 (1267)
6 KOG0783|consensus 99.9 6.4E-24 1.4E-28 197.0 15.9 268 4-308 179-451 (1267)
7 KOG1428|consensus 99.8 7.4E-20 1.6E-24 176.8 20.2 268 6-326 483-857 (3738)
8 KOG1428|consensus 99.8 1.9E-19 4.2E-24 174.0 22.1 242 2-279 525-873 (3738)
9 PF13540 RCC1_2: Regulator of 99.3 4.2E-12 9.2E-17 70.6 4.1 30 290-319 1-30 (30)
10 PF00415 RCC1: Regulator of ch 99.3 1.6E-11 3.5E-16 78.4 6.5 50 143-193 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.2 2E-11 4.3E-16 67.9 4.3 30 70-99 1-30 (30)
12 PF00415 RCC1: Regulator of ch 99.2 1.6E-11 3.5E-16 78.4 4.2 50 22-83 1-51 (51)
13 KOG0941|consensus 98.9 1.8E-11 4E-16 115.7 -5.4 136 67-208 13-156 (850)
14 KOG0941|consensus 98.9 2.2E-11 4.8E-16 115.1 -8.6 182 118-307 7-197 (850)
15 KOG3669|consensus 96.0 0.49 1.1E-05 44.5 15.6 108 132-254 190-299 (705)
16 KOG0315|consensus 94.9 1.2 2.5E-05 37.8 12.7 103 184-316 92-198 (311)
17 KOG3669|consensus 94.7 3.3 7.1E-05 39.3 16.5 70 126-202 228-299 (705)
18 PF11725 AvrE: Pathogenicity f 94.6 2.3 5E-05 45.4 16.7 92 229-339 702-795 (1774)
19 KOG0943|consensus 94.3 0.005 1.1E-07 61.8 -2.7 137 67-209 373-509 (3015)
20 KOG0943|consensus 94.1 0.0064 1.4E-07 61.1 -2.3 131 176-316 372-506 (3015)
21 KOG1900|consensus 92.8 4.2 9E-05 42.5 14.6 221 83-315 95-340 (1311)
22 PF11725 AvrE: Pathogenicity f 92.7 2.7 5.8E-05 45.0 13.3 220 67-312 488-728 (1774)
23 PF07569 Hira: TUP1-like enhan 90.2 1.7 3.7E-05 36.6 7.9 27 229-255 12-38 (219)
24 KOG0646|consensus 90.0 16 0.00034 33.9 15.7 165 67-255 123-305 (476)
25 PF07569 Hira: TUP1-like enhan 88.6 2.9 6.3E-05 35.3 8.1 30 177-206 12-41 (219)
26 KOG0291|consensus 82.1 57 0.0012 32.5 19.7 125 80-225 312-438 (893)
27 KOG4693|consensus 80.9 28 0.00061 30.1 10.2 61 79-150 82-146 (392)
28 KOG1408|consensus 80.4 51 0.0011 32.7 12.8 28 67-94 217-248 (1080)
29 KOG0649|consensus 78.1 34 0.00073 29.2 9.7 78 125-203 63-142 (325)
30 smart00706 TECPR Beta propelle 76.8 7 0.00015 21.9 4.0 25 68-92 8-33 (35)
31 smart00706 TECPR Beta propelle 76.5 6.2 0.00014 22.1 3.8 25 288-312 8-33 (35)
32 PHA02713 hypothetical protein; 74.8 61 0.0013 31.7 12.3 13 243-255 458-470 (557)
33 KOG0282|consensus 72.5 65 0.0014 30.2 10.9 19 141-159 451-469 (503)
34 KOG4441|consensus 72.2 81 0.0018 30.9 12.4 24 291-314 507-530 (571)
35 KOG0315|consensus 71.5 66 0.0014 27.7 21.3 64 130-205 132-197 (311)
36 PF04762 IKI3: IKI3 family; I 71.0 1.4E+02 0.003 31.3 17.6 28 67-94 426-455 (928)
37 PHA03098 kelch-like protein; P 70.8 1E+02 0.0023 29.7 13.7 16 135-151 382-397 (534)
38 KOG1408|consensus 69.9 1.2E+02 0.0027 30.2 16.0 79 67-150 165-247 (1080)
39 PF12341 DUF3639: Protein of u 69.1 15 0.00033 19.5 3.9 25 124-148 1-25 (27)
40 PF04841 Vps16_N: Vps16, N-ter 67.1 1.1E+02 0.0024 28.6 19.0 201 68-316 81-288 (410)
41 COG4257 Vgb Streptogramin lyas 66.6 52 0.0011 28.8 8.4 109 185-320 61-173 (353)
42 PF04762 IKI3: IKI3 family; I 66.2 1.8E+02 0.0038 30.6 21.6 45 188-254 592-636 (928)
43 KOG1274|consensus 65.4 1.7E+02 0.0036 30.0 22.1 68 13-94 16-85 (933)
44 PF02239 Cytochrom_D1: Cytochr 62.3 1.3E+02 0.0028 27.6 13.6 74 3-101 28-103 (369)
45 KOG0293|consensus 57.3 1.6E+02 0.0035 27.3 12.5 70 67-152 395-470 (519)
46 PHA03098 kelch-like protein; P 57.3 1.1E+02 0.0024 29.5 10.4 15 240-255 382-396 (534)
47 TIGR03300 assembly_YfgL outer 56.2 1.6E+02 0.0035 26.8 12.7 16 297-312 361-376 (377)
48 TIGR03548 mutarot_permut cycli 56.1 1.4E+02 0.003 26.6 10.2 18 299-316 216-233 (323)
49 PHA02713 hypothetical protein; 55.3 81 0.0018 30.8 9.0 15 301-315 458-472 (557)
50 KOG2280|consensus 54.9 2.4E+02 0.0052 28.5 12.8 70 126-205 85-155 (829)
51 PF06739 SBBP: Beta-propeller 54.9 16 0.00034 21.1 2.5 19 188-206 15-33 (38)
52 PF06204 CBM_X: Putative carbo 54.7 46 0.001 22.0 5.0 38 169-206 16-53 (66)
53 KOG1034|consensus 53.0 40 0.00088 30.0 5.7 58 190-255 322-381 (385)
54 KOG0293|consensus 52.2 2E+02 0.0043 26.7 15.7 70 176-255 394-468 (519)
55 PF03785 Peptidase_C25_C: Pept 51.5 26 0.00057 24.1 3.5 37 287-323 15-52 (81)
56 PRK05560 DNA gyrase subunit A; 51.4 3E+02 0.0064 28.5 21.5 170 67-255 589-770 (805)
57 TIGR03300 assembly_YfgL outer 51.0 1.9E+02 0.0042 26.2 12.4 57 187-254 320-376 (377)
58 KOG0646|consensus 48.7 2.4E+02 0.0051 26.5 17.0 153 69-255 83-245 (476)
59 PF01436 NHL: NHL repeat; Int 48.5 37 0.0008 17.9 3.2 18 136-153 5-22 (28)
60 KOG1240|consensus 48.5 3.8E+02 0.0082 28.9 13.5 119 125-255 1049-1179(1431)
61 TIGR01063 gyrA DNA gyrase, A s 47.4 3.4E+02 0.0074 28.0 21.6 170 67-255 587-767 (800)
62 smart00442 FGF Acidic and basi 46.5 1.3E+02 0.0028 22.8 7.7 66 68-148 2-67 (126)
63 KOG2111|consensus 45.0 2.3E+02 0.005 25.3 16.3 160 2-206 95-257 (346)
64 PF00167 FGF: Fibroblast growt 44.5 1.3E+02 0.0028 22.4 8.0 65 70-149 2-66 (122)
65 PF04841 Vps16_N: Vps16, N-ter 40.1 3.2E+02 0.0068 25.5 21.1 67 178-255 217-285 (410)
66 PF13418 Kelch_4: Galactose ox 39.6 31 0.00067 20.7 2.3 18 297-314 3-20 (49)
67 COG5308 NUP170 Nuclear pore co 39.5 4.5E+02 0.0098 27.4 11.0 61 133-206 141-202 (1263)
68 KOG0291|consensus 38.1 4.4E+02 0.0096 26.7 24.3 109 190-317 312-424 (893)
69 KOG1230|consensus 38.0 2.6E+02 0.0057 26.1 8.6 17 239-255 233-249 (521)
70 PF07312 DUF1459: Protein of u 37.2 22 0.00048 24.2 1.4 11 27-37 58-69 (84)
71 PRK05560 DNA gyrase subunit A; 37.2 4.9E+02 0.011 26.9 21.9 227 68-320 537-777 (805)
72 PHA02790 Kelch-like protein; P 36.9 1.9E+02 0.0041 27.6 8.2 12 244-255 403-414 (480)
73 cd00058 FGF Acidic and basic f 36.2 1.9E+02 0.0041 21.8 6.9 62 72-148 2-63 (123)
74 PLN03215 ascorbic acid mannose 35.9 1.7E+02 0.0037 26.9 7.3 63 125-203 160-225 (373)
75 KOG0275|consensus 34.8 3.4E+02 0.0073 24.4 8.9 22 293-314 445-466 (508)
76 PF03785 Peptidase_C25_C: Pept 34.3 1.1E+02 0.0023 21.2 4.4 34 67-100 15-49 (81)
77 PLN02153 epithiospecifier prot 32.6 3.7E+02 0.008 24.1 17.2 14 242-255 308-321 (341)
78 KOG1034|consensus 32.5 90 0.0019 28.0 4.7 55 84-151 326-382 (385)
79 KOG1240|consensus 31.8 7E+02 0.015 27.1 17.5 163 67-255 1048-1223(1431)
80 PLN03215 ascorbic acid mannose 31.3 2.2E+02 0.0048 26.2 7.2 62 69-150 161-225 (373)
81 PF10168 Nup88: Nuclear pore c 30.3 6E+02 0.013 25.9 15.4 119 137-255 35-177 (717)
82 PF10168 Nup88: Nuclear pore c 30.3 6E+02 0.013 25.9 18.3 27 124-150 146-177 (717)
83 PRK02529 petN cytochrome b6-f 29.4 50 0.0011 18.2 1.7 14 308-321 19-32 (33)
84 COG4257 Vgb Streptogramin lyas 28.8 4.1E+02 0.0089 23.5 16.0 58 75-149 147-205 (353)
85 PF02239 Cytochrom_D1: Cytochr 28.4 4.7E+02 0.01 24.0 14.1 120 67-204 26-157 (369)
86 PRK13979 DNA topoisomerase IV 28.3 7.4E+02 0.016 26.3 21.2 132 4-159 554-696 (957)
87 PF13570 PQQ_3: PQQ-like domai 27.8 79 0.0017 18.0 2.6 22 293-314 17-38 (40)
88 PF08450 SGL: SMP-30/Gluconola 27.7 3.7E+02 0.008 22.6 11.7 16 240-255 186-201 (246)
89 KOG2444|consensus 27.4 3.9E+02 0.0084 22.7 7.7 60 76-150 69-130 (238)
90 KOG1900|consensus 27.3 8.4E+02 0.018 26.6 21.0 34 176-209 241-276 (1311)
91 cd00200 WD40 WD40 domain, foun 27.0 3.5E+02 0.0076 22.1 24.7 144 69-255 95-247 (289)
92 KOG2055|consensus 26.6 5.6E+02 0.012 24.3 10.3 19 187-205 389-407 (514)
93 KOG0307|consensus 25.5 1.6E+02 0.0036 30.7 5.8 34 288-321 254-290 (1049)
94 PF11399 DUF3192: Protein of u 25.3 55 0.0012 23.8 1.9 26 74-99 76-101 (102)
95 cd00200 WD40 WD40 domain, foun 24.0 4E+02 0.0087 21.7 25.9 135 79-255 65-205 (289)
96 KOG4441|consensus 23.9 3.6E+02 0.0078 26.5 7.8 15 302-316 471-485 (571)
97 TIGR01063 gyrA DNA gyrase, A s 23.7 8.3E+02 0.018 25.3 23.4 170 68-254 535-715 (800)
98 PLN02772 guanylate kinase 23.4 5E+02 0.011 24.2 8.1 20 238-257 76-95 (398)
99 KOG0278|consensus 23.3 5E+02 0.011 22.6 10.8 26 180-205 146-173 (334)
100 KOG1274|consensus 23.0 8.7E+02 0.019 25.2 15.6 68 131-202 12-81 (933)
101 KOG2106|consensus 22.8 6.9E+02 0.015 24.1 20.4 236 7-320 217-482 (626)
102 KOG0275|consensus 22.8 5.6E+02 0.012 23.0 9.7 19 237-255 447-465 (508)
103 PRK11138 outer membrane biogen 22.7 6E+02 0.013 23.3 13.2 17 297-313 376-392 (394)
104 KOG1188|consensus 22.4 5.9E+02 0.013 23.1 15.6 122 4-156 32-155 (376)
105 PF13854 Kelch_5: Kelch motif 21.5 94 0.002 18.0 2.1 18 298-316 7-24 (42)
106 PLN02772 guanylate kinase 21.4 2.8E+02 0.0061 25.8 6.1 21 185-205 75-95 (398)
107 PF08887 GAD-like: GAD-like do 21.2 92 0.002 23.0 2.4 21 296-316 78-98 (109)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=5.4e-47 Score=333.15 Aligned_cols=316 Identities=25% Similarity=0.391 Sum_probs=243.7
Q ss_pred cceeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCC---C---CC---CCCceeeeeeeecCCCCC-CCCCCeE
Q psy5892 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDP---R---KK---GNPLELVMSFVRIPLPVK-HPSTQIK 71 (340)
Q Consensus 2 ~~i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~---~---~~---~~~~~~~~~p~~v~~~~~-~~~~~i~ 71 (340)
-.|.+++||..|+++| +.||. ||+||.|..|+||+..- . .. ....+....|..++.... ....+++
T Consensus 104 ~~i~~~acGg~hsl~l--d~Dg~--lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv 179 (476)
T COG5184 104 ASIIKIACGGNHSLGL--DHDGN--LYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVV 179 (476)
T ss_pred eeeEEeecCCceEEee--cCCCC--EEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheE
Confidence 3689999999999999 79999 99999999999998761 0 00 001122334444444111 1144899
Q ss_pred EEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccc-cCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEE
Q psy5892 72 HLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDY-QGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCG 150 (340)
Q Consensus 72 ~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG 150 (340)
+++||++++++|+++|+||+||....+.++.+...+... .....|-.++ ...|+++++|.+|.++|+++|++|.||
T Consensus 180 ~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~G 256 (476)
T COG5184 180 KLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWG 256 (476)
T ss_pred EeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEec
Confidence 999999999999999999999999999988885444332 2222333333 478999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCC-----CccccCceEeec
Q psy5892 151 WGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISES-----EMQISTPRVLSQ 225 (340)
Q Consensus 151 ~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~-----~~~~~~p~~i~~ 225 (340)
+|..||||....+....+.++...+.-..|..|+||.+|++||+++|++|+||.|.+||||.. ......|.....
T Consensus 257 s~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~ 336 (476)
T COG5184 257 SNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQL 336 (476)
T ss_pred CCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeecccccccc
Confidence 999999999988887777777766666668999999999999999999999999999999985 112222332222
Q ss_pred ccCcccEEEEEecCceEEEEcCCCcEEEEcCCCCCCCCCCcc----ccCceeecccccCCcccCCCCCeEEEEccCCceE
Q psy5892 226 CKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSR----SMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFG 301 (340)
Q Consensus 226 ~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~g~~g~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~ 301 (340)
.....|..+++|..|+++|..+|.||+||++..++.....+ ...|..++ ...++.+++||..|.+
T Consensus 337 -~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls----------~~~~~~~v~~gt~~~~ 405 (476)
T COG5184 337 -LSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS----------VAIKLEQVACGTHHNI 405 (476)
T ss_pred -CCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccccc----------cccceEEEEecCccce
Confidence 33456999999999999999999999999655554332221 22222222 1257999999999999
Q ss_pred EEecCCcEEEEeCCCCCcccCCCCC-CCCccEEee
Q psy5892 302 AITNFGHLYMWGKNQYGQLGLGTVE-DQPFPLKVA 335 (340)
Q Consensus 302 ~lt~~g~vy~wG~n~~GqLG~g~~~-~~~~p~~v~ 335 (340)
+.+++|+||+||++.+||||.|+.+ +...|+.++
T Consensus 406 ~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~ 440 (476)
T COG5184 406 ARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIR 440 (476)
T ss_pred eeccCCceEEecCchhhhccCCchhhhcccccccc
Confidence 9999999999999999999999775 677777776
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.5e-43 Score=311.52 Aligned_cols=293 Identities=26% Similarity=0.462 Sum_probs=225.3
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCC
Q psy5892 27 LFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQ 106 (340)
Q Consensus 27 l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~ 106 (340)
||+||+|..+|||++..... +..|+...+..-. ...|++++||..|+++|++||+||+||.|..|+||..-..
T Consensus 70 v~~~Gsn~~~eLGlg~de~~------~~~P~~~~~~~~d-~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~ 142 (476)
T COG5184 70 VYSWGSNGMNELGLGNDETK------VDRPQLNPFGRID-KASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHK 142 (476)
T ss_pred eEEEecCcceeeccCCchhc------ccCceecCccccc-ceeeEEeecCCceEEeecCCCCEEEeccCccccccccccc
Confidence 99999999999999987643 5677776665312 5789999999999999999999999999999999987621
Q ss_pred C-----------ccccCCceeccccc----cCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCCCCCe------
Q psy5892 107 E-----------EDYQGKWFCHNIAD----LEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQ------ 165 (340)
Q Consensus 107 ~-----------~~~~~~~~~~~~~~----~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~------ 165 (340)
+ ........|..++. ....+|++++||++++++|+++|+||+||....+.++.+...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~ 222 (476)
T COG5184 143 DICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQ 222 (476)
T ss_pred ccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceee
Confidence 0 11112233444443 22358999999999999999999999999988888877744332
Q ss_pred eeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCC-CCccccCceEeecccCcccEEEEEecCceEEE
Q psy5892 166 ETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISE-SEMQISTPRVLSQCKGVSRIVDVASGGSACTM 244 (340)
Q Consensus 166 ~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~-~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~ 244 (340)
.+|..++ ...|+++++|.+|.++|+++|++|.||++..||||. ..+....+..+..+.....|+.|+||.+|+++
T Consensus 223 ~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~a 298 (476)
T COG5184 223 FTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLA 298 (476)
T ss_pred eeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEE
Confidence 3344433 558999999999999999999999999999999999 55556666666655556678999999999999
Q ss_pred EcCCCcEEEEc---CCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEecCCcEEEEeCCCCCccc
Q psy5892 245 LNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLG 321 (340)
Q Consensus 245 lt~~g~v~~~G---~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~GqLG 321 (340)
|+++|.||+|| +||++.+++ ...+..... ....+......|..|++|..|+++|..+|.||+||++..||||
T Consensus 299 l~~~G~i~a~G~n~fgqlg~~~~---~~~~a~~tk--~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg 373 (476)
T COG5184 299 LDEDGEIYAWGVNIFGQLGAGSD---GEIGALTTK--PNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLG 373 (476)
T ss_pred EcCCCeEEEeccchhcccccCcc---cccceeecc--ccccccCCCceEEEEecCcceEEEEecCceEEEecCCcccccc
Confidence 99999999999 566666522 111111111 1111122345689999999999999999999999999999999
Q ss_pred CCC--CCCCCccEEee
Q psy5892 322 LGT--VEDQPFPLKVA 335 (340)
Q Consensus 322 ~g~--~~~~~~p~~v~ 335 (340)
.++ +..++.|.++.
T Consensus 374 ~~~~~~~~~~~~~~ls 389 (476)
T COG5184 374 IQEEITIDVSTPTKLS 389 (476)
T ss_pred CcccceeecCCccccc
Confidence 998 55666665544
No 3
>KOG1427|consensus
Probab=100.00 E-value=1.1e-40 Score=275.94 Aligned_cols=301 Identities=24% Similarity=0.383 Sum_probs=239.3
Q ss_pred ceeEEeecC--CeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeE
Q psy5892 3 KITDIACGY--GFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHT 80 (340)
Q Consensus 3 ~i~~v~~G~--~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~ 80 (340)
+|+.|++|. .|++++ +-+|+ +|+||.|..||||+++...+ ..|+.|+-.. ..+|++.+||++|+
T Consensus 57 ~iR~VasG~~aaH~vli--~megk--~~~wGRNekGQLGhgD~k~~-------e~Ptvi~gL~---~~~iv~AA~GrnHT 122 (443)
T KOG1427|consen 57 NIRFVASGCAAAHCVLI--DMEGK--CYTWGRNEKGQLGHGDMKQR-------ERPTVISGLS---KHKIVKAAAGRNHT 122 (443)
T ss_pred eEEEEecccchhhEEEE--ecccc--eeecccCccCccCccchhhc-------cCCchhhhhh---hhhHHHHhhccCcE
Confidence 578888775 466665 78999 99999999999999976654 5677777666 66999999999999
Q ss_pred EEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCC
Q psy5892 81 IVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLG 160 (340)
Q Consensus 81 ~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~ 160 (340)
++||++|.+|++|.|.+||||.+...++...+ +++......|..|+||.+++++|+..+.+..+|...+||||++
T Consensus 123 l~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~-----~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~ 197 (443)
T KOG1427|consen 123 LVLTDTGQVLAFGENKYGQLGLGNAKNEVEST-----PLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHG 197 (443)
T ss_pred EEEecCCcEEEecccccccccccccccccccC-----CCccccCccceeeccccceEEEeecccceeecCCccccccccC
Confidence 99999999999999999999999888754332 2333346889999999999999999999999999999999998
Q ss_pred CCCC--------------eeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCC-CCccccCceEeec
Q psy5892 161 HLNN--------------QETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISE-SEMQISTPRVLSQ 225 (340)
Q Consensus 161 ~~~~--------------~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~-~~~~~~~p~~i~~ 225 (340)
.... +..|..+. .+....|++++||.+|++|++++++||+||...||+||+ .......|+.+++
T Consensus 198 td~~~~~~~~~~~~~~e~~pr~~~i~-~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~ 276 (443)
T KOG1427|consen 198 TDNEFNMKDSSVRLAYEAQPRPKAIA-SLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKV 276 (443)
T ss_pred cchhhccccccceeeeecCCCccccc-cccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHH
Confidence 7543 22333343 567789999999999999999999999999999999999 7888889999986
Q ss_pred ccC-cccEEEEEecCceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEe
Q psy5892 226 CKG-VSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAIT 304 (340)
Q Consensus 226 ~~~-~~~i~~i~~g~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt 304 (340)
+.. ...-.++.||+..++++.+-|.||.||...-.. .....|..+-.+ ...++..+.+++.|.++-
T Consensus 277 Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~g----e~~mypkP~~dl--------sgwnl~~~~~~~~h~~v~- 343 (443)
T KOG1427|consen 277 FDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKNNG----EDWMYPKPMMDL--------SGWNLRWMDSGSMHHFVG- 343 (443)
T ss_pred hcCCCCCCcceeeecccceeecccceeEEeeccccCc----ccccCCCchhhc--------CCccCCCcCccceeeeec-
Confidence 444 455778999999999999999999999432211 122333333221 246788999999998764
Q ss_pred cCCcEEEEeCCCCCcccCCCC--CCCCccEEeec
Q psy5892 305 NFGHLYMWGKNQYGQLGLGTV--EDQPFPLKVAV 336 (340)
Q Consensus 305 ~~g~vy~wG~n~~GqLG~g~~--~~~~~p~~v~~ 336 (340)
.+..+.+||...+|.++-+.. .++..|.+|+.
T Consensus 344 ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~ 377 (443)
T KOG1427|consen 344 ADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDM 377 (443)
T ss_pred ccccccccccccccccccCccccccccCccccch
Confidence 456799999988777655443 35666777664
No 4
>KOG1427|consensus
Probab=100.00 E-value=4.6e-35 Score=242.69 Aligned_cols=275 Identities=24% Similarity=0.355 Sum_probs=222.9
Q ss_pred ceeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEEE
Q psy5892 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIV 82 (340)
Q Consensus 3 ~i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~~ 82 (340)
+|.+.+||+.|+++| |++|+ +|+||.|.+||||++++... +..|+++-.- ...|..|+||.+|++.
T Consensus 111 ~iv~AA~GrnHTl~l--tdtG~--v~afGeNK~GQlGlgn~~~~------v~s~~~~~~~----~~~v~~v~cga~ftv~ 176 (443)
T KOG1427|consen 111 KIVKAAAGRNHTLVL--TDTGQ--VLAFGENKYGQLGLGNAKNE------VESTPLPCVV----SDEVTNVACGADFTVW 176 (443)
T ss_pred hHHHHhhccCcEEEE--ecCCc--EEEecccccccccccccccc------cccCCCcccc----CccceeeccccceEEE
Confidence 577889999999999 79999 99999999999999998765 4455444443 6689999999999999
Q ss_pred EeCCCcEEEEecCCCCCccCCCCCCcc---------ccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCC
Q psy5892 83 ITDNEGAFTFGNNSFGQCGRGIVQEED---------YQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGA 153 (340)
Q Consensus 83 lt~~g~l~~~G~n~~gqlg~~~~~~~~---------~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~ 153 (340)
|+..+.|..+|.-.|||||++....-. +...+.+..+..++..+|++++||.+|+++++++++||+||..-
T Consensus 177 l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGG 256 (443)
T KOG1427|consen 177 LSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGG 256 (443)
T ss_pred eecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEecccc
Confidence 999999999999999999999654322 33444566677888999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeeeceeecc-cccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccE
Q psy5892 154 DGQTGLGHLNNQETPCLVRG-EIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRI 232 (340)
Q Consensus 154 ~gqlg~~~~~~~~~p~~~~~-~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i 232 (340)
+|.||+.....+..|+++.. +....--..+.||+..++++.+-|.||.||.+.. +-.....|+++-. +...++
T Consensus 257 yGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~-----~ge~~mypkP~~d-lsgwnl 330 (443)
T KOG1427|consen 257 YGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN-----NGEDWMYPKPMMD-LSGWNL 330 (443)
T ss_pred ccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc-----CcccccCCCchhh-cCCccC
Confidence 99999999999888887763 2344456788999999999999999999998764 3334455665554 446788
Q ss_pred EEEEecCceEEEEcCCCcEEEEc---CC-CCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEecC
Q psy5892 233 VDVASGGSACTMLNDEGLVYSWG---YG-LLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNF 306 (340)
Q Consensus 233 ~~i~~g~~~~~~lt~~g~v~~~G---~g-~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~ 306 (340)
..+.|+..|.++-. |-.+..|| ++ .+|.+.....+..|..++.+ .+..|.+|++|..|+++|...
T Consensus 331 ~~~~~~~~h~~v~a-d~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l--------~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 331 RWMDSGSMHHFVGA-DSSCISWGHAQYGELLGGPNGQKSSAAPKKVDML--------EGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred CCcCccceeeeecc-cccccccccccccccccCccccccccCccccchh--------cceeccceeeccceEEEEEcc
Confidence 99999988876554 66788999 33 44555556667788877764 357899999999999998654
No 5
>KOG0783|consensus
Probab=99.95 E-value=8.6e-28 Score=222.35 Aligned_cols=270 Identities=23% Similarity=0.395 Sum_probs=207.6
Q ss_pred eEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCC
Q psy5892 26 KLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIV 105 (340)
Q Consensus 26 ~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~ 105 (340)
+||+||.|.+..||.++.... ..|..|.+.... +.-+++|+.+..|++++++.|+||.+|...-|.||++..
T Consensus 143 dvy~wG~N~N~tLGign~~~~-------~~Pe~Vdlf~~S-g~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gde 214 (1267)
T KOG0783|consen 143 DVYGWGTNVNNTLGIGNGKEP-------SSPERVDLFKTS-GQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDE 214 (1267)
T ss_pred ceeEecccccccccccCCCCC-------CChHHhHHHHhc-cHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcc
Confidence 499999999999999998776 567777765543 677899999999999999999999999999999999932
Q ss_pred CCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCCCC-Ceeeceeecc-cccC-ccEEE
Q psy5892 106 QEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLN-NQETPCLVRG-EIEG-ERIVK 182 (340)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~-~~~~p~~~~~-~~~~-~~i~~ 182 (340)
. ....|.+++.|.+.+|.+|++...|+++||++|.||+||.|..+|||..+.. ....|..+.. .+.+ ..|+.
T Consensus 215 q-----~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIg 289 (1267)
T KOG0783|consen 215 Q-----YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIG 289 (1267)
T ss_pred c-----ccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhh
Confidence 2 2456777888889999999999999999999999999999999999987643 3345554432 1222 37999
Q ss_pred EEecCcEEEEEeCCCCEEEEeCCCCCCCCC--CCccccCceEeecccCcccEEEEEecCceEEEEcCCCcEEEEc-CCCC
Q psy5892 183 LSSAVDCVLAVSDKGDVFGWGNSEYGQISE--SEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWG-YGLL 259 (340)
Q Consensus 183 i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~--~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G-~g~~ 259 (340)
|++|..|++|.++. .||+||.| .||||. +...+..|+.+.. -...|.-++|...-++++++++.+|++- +.+.
T Consensus 290 vaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~--~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~ 365 (1267)
T KOG0783|consen 290 VAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLAG--LLSPVIHVVATTRATVCLLQNNSIIAFADYNQV 365 (1267)
T ss_pred hhcccceeeeeecc-eEEEeccc-CceecCCCCCceeecchhhcc--cccceEEEEecCccEEEEecCCcEEEEecccce
Confidence 99999999999988 89999998 699998 6667777865532 2568999999999999999999999987 3333
Q ss_pred CCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEecCCcEEEEeCCCC
Q psy5892 260 GQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQY 317 (340)
Q Consensus 260 g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~ 317 (340)
-....... .....+ .+..--....++++..+-..-.+++|+-|+||.|-+++.
T Consensus 366 k~~~n~~~-lks~~V----~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns 418 (1267)
T KOG0783|consen 366 KLPFNVDF-LKSLKV----TGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNS 418 (1267)
T ss_pred ecCcchhc-cceeEE----ecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCC
Confidence 22221111 111111 111100012456677777777899999999999998763
No 6
>KOG0783|consensus
Probab=99.91 E-value=6.4e-24 Score=196.95 Aligned_cols=268 Identities=14% Similarity=0.219 Sum_probs=191.6
Q ss_pred eeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEEEE
Q psy5892 4 ITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVI 83 (340)
Q Consensus 4 i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~~l 83 (340)
+++|+.++.|++|+ +..|+ ||++|.+..|+||.|+...- ..|+.|+... ..++.+|+....|+++|
T Consensus 179 ~~qV~l~kfHSvfl--~~kgq--vY~cGhG~GGRlG~gdeq~~-------~iPkrV~gL~---gh~~~qisvs~~HslvL 244 (1267)
T KOG0783|consen 179 FSQVQLSKFHSVFL--TEKGQ--VYVCGHGAGGRLGFGDEQYN-------FIPKRVPGLI---GHKVIQISVSHTHSLVL 244 (1267)
T ss_pred HHHHHHhhceeeEe--cCCCc--EEEeccCCCCccCcCccccc-------cccccccccc---ccceEEEEeecceeEEE
Confidence 45789999999999 68999 99999999999999976643 5666677644 77999999999999999
Q ss_pred eCCCcEEEEecCCCCCccCCCCCCc-cccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCCC
Q psy5892 84 TDNEGAFTFGNNSFGQCGRGIVQEE-DYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHL 162 (340)
Q Consensus 84 t~~g~l~~~G~n~~gqlg~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~ 162 (340)
|++|-||+||.|..+|||..+.... +.+....+.++..+ ..|+.++||..|+++-+ +.-||+||.|. ||||..+.
T Consensus 245 T~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~--~~iIgvaAg~~hsVawt-~~~VY~wGlN~-GQlGi~~n 320 (1267)
T KOG0783|consen 245 TKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGF--KQIIGVAAGKSHSVAWT-DTDVYSWGLNN-GQLGISDN 320 (1267)
T ss_pred eecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcch--hhhhhhhcccceeeeee-cceEEEecccC-ceecCCCC
Confidence 9999999999999999998865543 23333344445544 58999999999999998 56799999865 99997654
Q ss_pred C-CeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEee-cc--cCcccEEEEEec
Q psy5892 163 N-NQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLS-QC--KGVSRIVDVASG 238 (340)
Q Consensus 163 ~-~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~-~~--~~~~~i~~i~~g 238 (340)
. ....|+.+. -....|..+.|....++++++++.+|++-+-..-.+..+...... ..+. .. .....+++..+.
T Consensus 321 ~~~Vt~Pr~l~--~~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~n~~~lks-~~V~gg~l~~~~~~~~k~~a~ 397 (1267)
T KOG0783|consen 321 ISVVTTPRRLA--GLLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPFNVDFLKS-LKVTGGPLSLTRFNVRKLLAS 397 (1267)
T ss_pred Cceeecchhhc--ccccceEEEEecCccEEEEecCCcEEEEecccceecCcchhccce-eEEecCccchhhhhhhhcchh
Confidence 3 456776553 234579999999999999999999999975432222211111100 0111 00 012356677777
Q ss_pred CceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEecCCc
Q psy5892 239 GSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGH 308 (340)
Q Consensus 239 ~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g~ 308 (340)
....+++|+-|.||.|-.. +.+..-.....+ +-..|.+|+---+..+++|++|.
T Consensus 398 ~~kll~lte~g~Vy~w~s~--------ns~~~~c~ftp~--------r~~~isdIa~~~N~~~~~t~dGc 451 (1267)
T KOG0783|consen 398 ENKLLVLTELGEVYEWDSK--------NSTRTSCKFTPL--------RIFEISDIAWTANSLILCTRDGC 451 (1267)
T ss_pred hhheeeeccCCeEEEEecC--------CCceeeeecccc--------eeeehhhhhhccceEEEEecCcc
Confidence 8888999999999999621 111111111100 11346677777788899999993
No 7
>KOG1428|consensus
Probab=99.85 E-value=7.4e-20 Score=176.78 Aligned_cols=268 Identities=16% Similarity=0.252 Sum_probs=183.3
Q ss_pred EEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEEEEeC
Q psy5892 6 DIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITD 85 (340)
Q Consensus 6 ~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~~lt~ 85 (340)
++-.++++.++- +.+|+ ||..|.. ..+|.-.+... -++++. .++|++|+.|-+-++++.-
T Consensus 483 ~L~~~RE~A~iq--a~sGK--vYYaGn~--t~~Gl~e~G~n-----------WmEL~l---~~~IVq~SVG~D~~~~~~~ 542 (3738)
T KOG1428|consen 483 DLHFTREMAFIQ--ARSGK--VYYAGNG--TRFGLFETGNN-----------WMELCL---PEPIVQISVGIDTIMFRSG 542 (3738)
T ss_pred ecccchhhhhhh--hcCcc--EEEecCc--cEEeEEccCCc-----------eEEecC---CCceEEEEeccchhheeec
Confidence 334455555554 78999 9999944 56776655433 344444 6699999999998888874
Q ss_pred --CCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCCCC
Q psy5892 86 --NEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLN 163 (340)
Q Consensus 86 --~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~ 163 (340)
+|-+++-|.... ....+++...+..+|+.+.+...---+++++|++|..|.....
T Consensus 543 A~~G~I~~v~D~k~---------------~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~-------- 599 (3738)
T KOG1428|consen 543 AGHGWIASVDDKKR---------------NGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR-------- 599 (3738)
T ss_pred cCcceEEeccCccc---------------ccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------
Confidence 455655553211 1223333334457788876655544588999999998842211
Q ss_pred CeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCC--CCcccc-----------------------
Q psy5892 164 NQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISE--SEMQIS----------------------- 218 (340)
Q Consensus 164 ~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~--~~~~~~----------------------- 218 (340)
...-..+...+.+.-|.+++.|+.|.++++.+|+||+||.|+.+|+|+ +.....
T Consensus 600 -~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~d 678 (3738)
T KOG1428|consen 600 -VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTD 678 (3738)
T ss_pred -ecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecC
Confidence 001111122566777999999999999999999999999999999887 111000
Q ss_pred ---------------------------------------------------------------------------CceEe
Q psy5892 219 ---------------------------------------------------------------------------TPRVL 223 (340)
Q Consensus 219 ---------------------------------------------------------------------------~p~~i 223 (340)
.|..+
T Consensus 679 t~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V 758 (3738)
T KOG1428|consen 679 TPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRV 758 (3738)
T ss_pred CcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchhe
Confidence 01111
Q ss_pred ec--ccCcccEEEEEecCceEEEEcCCCcEEEEcC---CCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCC
Q psy5892 224 SQ--CKGVSRIVDVASGGSACTMLNDEGLVYSWGY---GLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPC 298 (340)
Q Consensus 224 ~~--~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~---g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~ 298 (340)
.. .+-..++.+|+||.+|+++|.+|++||.+|+ ||||.++.. ....|..+-.+ .+..+++|++|.+
T Consensus 759 ~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~-Sk~~Pq~V~~~--------~~t~~vQVaAGSN 829 (3738)
T KOG1428|consen 759 ILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTL-SKNTPQQVILP--------SDTVIVQVAAGSN 829 (3738)
T ss_pred eeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccc-cCCCcceEEcC--------CCCceEEEecCCC
Confidence 10 1112368999999999999999999999996 455555443 33445444321 3578999999999
Q ss_pred ceEEEecCCcEEEEeCCCCCcccCCCCC
Q psy5892 299 TFGAITNFGHLYMWGKNQYGQLGLGTVE 326 (340)
Q Consensus 299 ~~~~lt~~g~vy~wG~n~~GqLG~g~~~ 326 (340)
|++++..+|.||.+|.=..|||+.+-.+
T Consensus 830 HT~l~~~DGsVFTFGaF~KGQL~RP~~e 857 (3738)
T KOG1428|consen 830 HTILRANDGSVFTFGAFGKGQLARPAGE 857 (3738)
T ss_pred ceEEEecCCcEEEeccccCccccCcccc
Confidence 9999999999999999999999997554
No 8
>KOG1428|consensus
Probab=99.85 E-value=1.9e-19 Score=173.99 Aligned_cols=242 Identities=17% Similarity=0.226 Sum_probs=176.0
Q ss_pred cceeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEE
Q psy5892 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTI 81 (340)
Q Consensus 2 ~~i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~ 81 (340)
++|++|+.|-+...|.+--.+|. ++.-|.... .| ...+.++ .+ ..+|+++.....---
T Consensus 525 ~~IVq~SVG~D~~~~~~~A~~G~--I~~v~D~k~--~~--------------~~Rr~~P--~n--~rKIv~v~~s~~VY~ 582 (3738)
T KOG1428|consen 525 EPIVQISVGIDTIMFRSGAGHGW--IASVDDKKR--NG--------------RLRRLVP--SN--RRKIVHVCASGHVYG 582 (3738)
T ss_pred CceEEEEeccchhheeeccCcce--EEeccCccc--cc--------------chhhcCC--CC--cceeEEEeeeeEEEE
Confidence 57999999999888886556666 777763311 11 1111222 21 568888876666566
Q ss_pred EEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCC
Q psy5892 82 VITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGH 161 (340)
Q Consensus 82 ~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~ 161 (340)
+++++|++|..|....- .....+.+..|++.-|.+++.|..|.++++.+|+||.||-|+.+|+|+-.
T Consensus 583 ~vSenGkifM~G~~tm~-------------~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVE 649 (3738)
T KOG1428|consen 583 YVSENGKIFMGGLHTMR-------------VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVE 649 (3738)
T ss_pred EEccCCeEEeecceeEE-------------ecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccc
Confidence 78999999999964320 01122345677788999999999999999999999999999999999622
Q ss_pred CCCe------------------------eec-------------------------------------------------
Q psy5892 162 LNNQ------------------------ETP------------------------------------------------- 168 (340)
Q Consensus 162 ~~~~------------------------~~p------------------------------------------------- 168 (340)
.... .+|
T Consensus 650 s~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~t 729 (3738)
T KOG1428|consen 650 STSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVT 729 (3738)
T ss_pred cccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcC
Confidence 1110 000
Q ss_pred -------------------ee---------ecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCC-CCccccC
Q psy5892 169 -------------------CL---------VRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISE-SEMQIST 219 (340)
Q Consensus 169 -------------------~~---------~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~-~~~~~~~ 219 (340)
++ +....-+.++.+|+||.+|+++|.+|++||+||.|.+||||. +......
T Consensus 730 E~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~ 809 (3738)
T KOG1428|consen 730 EPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNT 809 (3738)
T ss_pred CcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCC
Confidence 00 000112457999999999999999999999999999999999 6677788
Q ss_pred ceEeecccCcccEEEEEecCceEEEEcCCCcEEEEc---CCCCCCC--CCCccccCceeeccccc
Q psy5892 220 PRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWG---YGLLGQG--PKVSRSMKPTLIPSTLF 279 (340)
Q Consensus 220 p~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G---~g~~g~~--~~~~~~~~p~~~~~~~~ 279 (340)
|.++.. +....|++|++|.+|++++..||.||.+| .|||+.. ....-...|.+++..=+
T Consensus 810 Pq~V~~-~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~ 873 (3738)
T KOG1428|consen 810 PQQVIL-PSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGP 873 (3738)
T ss_pred cceEEc-CCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCCCCc
Confidence 888876 44678999999999999999999999999 6787763 33334566666665433
No 9
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.29 E-value=4.2e-12 Score=70.63 Aligned_cols=30 Identities=40% Similarity=0.743 Sum_probs=26.1
Q ss_pred eEEEEccCCceEEEecCCcEEEEeCCCCCc
Q psy5892 290 VESLIAGPCTFGAITNFGHLYMWGKNQYGQ 319 (340)
Q Consensus 290 i~~i~~G~~~~~~lt~~g~vy~wG~n~~Gq 319 (340)
|++|++|.+|+++|+++|+||+||+|++||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.27 E-value=1.6e-11 Score=78.40 Aligned_cols=50 Identities=38% Similarity=0.529 Sum_probs=45.5
Q ss_pred CCcEEEEEeCCCCCCC-CCCCCCeeeceeecccccCccEEEEEecCcEEEEE
Q psy5892 143 SGKVYSCGWGADGQTG-LGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAV 193 (340)
Q Consensus 143 ~g~vy~wG~n~~gqlg-~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l 193 (340)
||+||+||+|.+|||| .........|++++ .+...+|++|+||.+|++||
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~-~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVP-FLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEG-GGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEEC-CCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 77888899999998 56667999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.22 E-value=2e-11 Score=67.92 Aligned_cols=30 Identities=30% Similarity=0.676 Sum_probs=26.1
Q ss_pred eEEEEeCCCeEEEEeCCCcEEEEecCCCCC
Q psy5892 70 IKHLATGRAHTIVITDNEGAFTFGNNSFGQ 99 (340)
Q Consensus 70 i~~i~~g~~~~~~lt~~g~l~~~G~n~~gq 99 (340)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 12
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.21 E-value=1.6e-11 Score=78.41 Aligned_cols=50 Identities=28% Similarity=0.422 Sum_probs=42.5
Q ss_pred CCCeeEEEeecCCCCCCC-CCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEEEE
Q psy5892 22 DKNLKLFGCGLNSDSQLG-YHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVI 83 (340)
Q Consensus 22 dg~~~l~~~G~n~~gqLG-~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~~l 83 (340)
||+ ||+||.|.+|||| .+. ......|++++.+. ..+|++|+||..|+++|
T Consensus 1 dG~--vy~wG~n~~GqLG~~~~-------~~~~~~P~~v~~~~---~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGR--VYSWGSNDYGQLGSGGD-------NKNVSVPTKVPFLS---GVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSE--EEEEEEETTSTTSSSSS-------SSEEEEEEEEGGGT---TSEEEEEEEESSEEEEE
T ss_pred CCc--EEEEECCCCCCCCCCCC-------CCceeEEEEECCCC---CCCEEEEEeCcceEEEC
Confidence 677 9999999999999 444 33468888888877 67999999999999987
No 13
>KOG0941|consensus
Probab=98.95 E-value=1.8e-11 Score=115.69 Aligned_cols=136 Identities=27% Similarity=0.477 Sum_probs=117.2
Q ss_pred CCCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEc----
Q psy5892 67 STQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTE---- 142 (340)
Q Consensus 67 ~~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~---- 142 (340)
..+|.+++||.+|+++++..|+++.||.|.+||+|.+ ...+... +.+++++.+.+...|++|.+|+++++.
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~----~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~ 87 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRA----LYFPDAK-PEPVESLKGVPLAQVSAGEAHSFALSSHTVL 87 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhh----ccCCCCC-CccchhhcCCcHHHHhcCCCcchhhhhchhh
Confidence 5589999999999999999999999999999999998 3334444 888999989999999999999888766
Q ss_pred ---CCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeC-CCCEEEEeCCCCC
Q psy5892 143 ---SGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSD-KGDVFGWGNSEYG 208 (340)
Q Consensus 143 ---~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~-~g~v~~wG~n~~g 208 (340)
+|+++.+|....+|+|+.-..+...|..+. .+-...+..|+|+..|+.+... -|++|.+|.+..|
T Consensus 88 lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~-e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 88 LTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVL-ELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred cchhccccccCCcccccccccccccccccHHHH-HHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 999999999999999997777777777776 4556689999999999888654 6899999988766
No 14
>KOG0941|consensus
Probab=98.85 E-value=2.2e-11 Score=115.14 Aligned_cols=182 Identities=23% Similarity=0.334 Sum_probs=129.2
Q ss_pred cccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeC--
Q psy5892 118 NIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSD-- 195 (340)
Q Consensus 118 ~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~-- 195 (340)
.+..+....+.+++||.+|+++++..|++|+||.|.+||+|++.......|..++ .+.+.+...|++|.+|++++..
T Consensus 7 ~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~-sl~g~p~a~v~~g~~hs~~lS~~~ 85 (850)
T KOG0941|consen 7 LVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVE-SLKGVPLAQVSAGEAHSFALSSHT 85 (850)
T ss_pred HHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccch-hhcCCcHHHHhcCCCcchhhhhch
Confidence 3344445789999999999999999999999999999999998554444488877 5778899999999998877665
Q ss_pred -----CCCEEEEeCCCCCCCCC-CCccccCceEeecccCcccEEEEEecCceEEEE-cCCCcEEEEcCCCCCCCCCCccc
Q psy5892 196 -----KGDVFGWGNSEYGQISE-SEMQISTPRVLSQCKGVSRIVDVASGGSACTML-NDEGLVYSWGYGLLGQGPKVSRS 268 (340)
Q Consensus 196 -----~g~v~~wG~n~~gqlg~-~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l-t~~g~v~~~G~g~~g~~~~~~~~ 268 (340)
+|.++.+|....+|+|+ -......|..+.. .-...+..|+||..|+.+. ..-|++|..|.+.-|.+......
T Consensus 86 ~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e-~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s~s 164 (850)
T KOG0941|consen 86 VLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLE-LIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVSLS 164 (850)
T ss_pred hhcchhccccccCCcccccccccccccccccHHHHH-HHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeeccc
Confidence 99999999999999999 3444444544433 2256899999999887766 45689999997766621111110
Q ss_pred cCceeecccccCCcccCCCCCeEEEEccCCceEEEecCC
Q psy5892 269 MKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFG 307 (340)
Q Consensus 269 ~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g 307 (340)
. +. +....+......+..+.+|.+.+..+...+
T Consensus 165 ~-~~-----~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 165 G-ED-----LLRDHDSEKDHRCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred h-hh-----hcccccHHHHHHHHHHhcCCCceEEEEeec
Confidence 0 00 011111111233455788888888877665
No 15
>KOG3669|consensus
Probab=96.02 E-value=0.49 Score=44.55 Aligned_cols=108 Identities=24% Similarity=0.279 Sum_probs=73.4
Q ss_pred ccCCeeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecC-cEEEEEeCCCCEE-EEeCCCCCC
Q psy5892 132 CGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAV-DCVLAVSDKGDVF-GWGNSEYGQ 209 (340)
Q Consensus 132 ~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~-~~~~~l~~~g~v~-~wG~n~~gq 209 (340)
.|.....+|..+|.+|. +-|.......-.--++ ..+..++..|++|. ....|++.+|.|| -.|-....+
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~--i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp 260 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKV--ICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNP 260 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeee--cCCCCccceEeecCcceEEEEeeCCcEEEEecccccCC
Confidence 56666778888888885 2222222221111111 12223699999999 7788999999976 568888878
Q ss_pred CCCCCccccCceEeecccCcccEEEEEecCceEEEEcCCCcEEEE
Q psy5892 210 ISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSW 254 (340)
Q Consensus 210 lg~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~ 254 (340)
.|..=..+..|+.. ..++.|+.|....-+|+.+|.+|.-
T Consensus 261 ~GdsWkdI~tP~~a------~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 261 EGDSWKDIVTPRQA------LEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCchhhhccCcccc------cceEEEEeccceEEEEecCCcEEEE
Confidence 88743345555543 2389999999999999999999876
No 16
>KOG0315|consensus
Probab=94.89 E-value=1.2 Score=37.77 Aligned_cols=103 Identities=23% Similarity=0.327 Sum_probs=58.9
Q ss_pred EecCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEec--CceEEEEcCCCcEEEEcCCCCCC
Q psy5892 184 SSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASG--GSACTMLNDEGLVYSWGYGLLGQ 261 (340)
Q Consensus 184 ~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~g~~g~ 261 (340)
.+-....+-=.+||.+-.|-... ...++.... ...|..|..- ..+.+.-+.+|.|++|- ++.
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~----------~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWD---l~~ 155 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRS----------LSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWD---LGE 155 (311)
T ss_pred eecCeEEEecCCCceEEEEeccC----------cccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEE---ccC
Confidence 33444445555777777776543 111222222 3345555443 44566778899999994 221
Q ss_pred CCCCccccCceeecccccCCcccCCCCCeEEEEccCCce--EEEecCCcEEEEeCCC
Q psy5892 262 GPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTF--GAITNFGHLYMWGKNQ 316 (340)
Q Consensus 262 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~--~~lt~~g~vy~wG~n~ 316 (340)
....-..+|. ....|.+++...+.+ +++++.|++|+|-.=+
T Consensus 156 -----~~c~~~liPe---------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 156 -----NSCTHELIPE---------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred -----CccccccCCC---------CCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 1122223332 246788888776665 4578899999998643
No 17
>KOG3669|consensus
Probab=94.74 E-value=3.3 Score=39.34 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=50.3
Q ss_pred ceEEEEccC-CeeEEEEcCCcEEE-EEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEE
Q psy5892 126 KIMDAVCGQ-DHTLFLTESGKVYS-CGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGW 202 (340)
Q Consensus 126 ~i~~i~~g~-~~~~~lt~~g~vy~-wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~w 202 (340)
.+..|++|. ....+|+.+|.||. -|-..+++.|..=. ....|.. ...++.|+.|-...-||+++|++|.-
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-dI~tP~~------a~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-DIVTPRQ------ALEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-hccCccc------ccceEEEEeccceEEEEecCCcEEEE
Confidence 588999999 67789999999774 45555555552111 2222322 22499999999999999999999964
No 18
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.60 E-value=2.3 Score=45.43 Aligned_cols=92 Identities=17% Similarity=0.155 Sum_probs=58.4
Q ss_pred cccEEEEEe-cCceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCce-EEEecC
Q psy5892 229 VSRIVDVAS-GGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTF-GAITNF 306 (340)
Q Consensus 229 ~~~i~~i~~-g~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~-~~lt~~ 306 (340)
...|+.++. +..+.++++++|++-+.- ....|..++.. + -...|++|++-..|. +|++++
T Consensus 702 ~~~i~a~Avv~~~~fvald~qg~lt~h~-----------k~g~p~~l~~~--g-----l~G~ik~l~lD~~~nL~Alt~~ 763 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALDDQGDLTAHQ-----------KPGRPVPLSRP--G-----LSGEIKDLALDEKQNLYALTST 763 (1774)
T ss_pred cCcceeEEEEcCCceEEeccCCcccccc-----------CCCCCccCCCC--C-----CCcchhheeeccccceeEecCC
Confidence 567777765 778899999999986541 11224444432 1 146899999988865 579999
Q ss_pred CcEEEEeCCCCCcccCCCCCCCCccEEeecCCC
Q psy5892 307 GHLYMWGKNQYGQLGLGTVEDQPFPLKVAVGGQ 339 (340)
Q Consensus 307 g~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 339 (340)
|++|..=.-..-+.-. .......|.+|.+|++
T Consensus 764 G~Lf~~~k~~WQ~~~~-~~~~~~~W~~v~lP~~ 795 (1774)
T PF11725_consen 764 GELFRLPKEAWQGNAE-GDQMAAKWQKVALPDE 795 (1774)
T ss_pred CceeecCHHHhhCccc-CCccccCceeccCCCC
Confidence 9999754332211111 1123477889998874
No 19
>KOG0943|consensus
Probab=94.25 E-value=0.005 Score=61.82 Aligned_cols=137 Identities=13% Similarity=0.119 Sum_probs=87.9
Q ss_pred CCCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcE
Q psy5892 67 STQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKV 146 (340)
Q Consensus 67 ~~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v 146 (340)
..+++.|.+-.+..++|...|++|.|-+...--+-.....+.+...+ -..+-.+.+.+|+.+++..-..-++|++|+|
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHP--d~a~iG~hge~ii~lSanniR~si~T~nghl 450 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHP--DAAFIGLHGEKIILLSANNIRASIATENGHL 450 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCC--ccceecccCCeeEEeecCceeeeeeecCCch
Confidence 55777787778889999999999999987653322111111110000 0112234478999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCC
Q psy5892 147 YSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQ 209 (340)
Q Consensus 147 y~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gq 209 (340)
-+|=+- .|.+............+....+.+++.-|+..|.+|..+++-+|=||---+.+
T Consensus 451 asWlDE----cgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 451 ASWLDE----CGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred hhHHhh----hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 998532 22222221111111112345556777888999999999999999999744443
No 20
>KOG0943|consensus
Probab=94.10 E-value=0.0064 Score=61.10 Aligned_cols=131 Identities=13% Similarity=0.172 Sum_probs=91.3
Q ss_pred cCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCC---CCccccCceEeecccCcccEEEEEecCceEEEEcCCCcEE
Q psy5892 176 EGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISE---SEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVY 252 (340)
Q Consensus 176 ~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~---~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~ 252 (340)
...+++.|.+-+.-.+||..+|++|.|-+.+...+-. -......|.-...-....+|+.+++..-..-++|++|.|.
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghla 451 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLA 451 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchh
Confidence 4568999999999999999999999999987666554 3344445554444445789999999999999999999999
Q ss_pred EEcCCCCCCCCCCcc-ccCceeecccccCCcccCCCCCeEEEEccCCceEEEecCCcEEEEeCCC
Q psy5892 253 SWGYGLLGQGPKVSR-SMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 253 ~~G~g~~g~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~ 316 (340)
.|=. +.|.+-.... ....+++.. ....+++..|...|.++..+++-+|.||---
T Consensus 452 sWlD-EcgagV~fkLa~ea~Tkiee---------d~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 452 SWLD-ECGAGVAFKLAHEAQTKIEE---------DGEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred hHHh-hhhhhhhhhhhhhhhhhhhh---------hhHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 9941 1121111000 011111111 2356677778889999999999999999643
No 21
>KOG1900|consensus
Probab=92.78 E-value=4.2 Score=42.48 Aligned_cols=221 Identities=16% Similarity=0.131 Sum_probs=101.1
Q ss_pred EeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCC-CCCCCCC
Q psy5892 83 ITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGAD-GQTGLGH 161 (340)
Q Consensus 83 lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~-gqlg~~~ 161 (340)
+|-|++||-|-.++.+++..-+..... ......+..-.+.-+- --.|.++|...-+|+..|-... .+.+...
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~sht---Il~V~LvkPkpgvFv~----~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHT---ILKVGLVKPKPGVFVP----EIQHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhh---heeeeeecCCCCcchh----hhheeEEecccceEEEEEEEeccccCcccc
Confidence 688999999999887665432211110 0011111100011111 2258889988888888884322 1111111
Q ss_pred CCCeeeceeecccccCccEEEEEecCcEEEEEe-CCCCEEEE----eCCCCCCC------CCCCccccCceEeecc-cCc
Q psy5892 162 LNNQETPCLVRGEIEGERIVKLSSAVDCVLAVS-DKGDVFGW----GNSEYGQI------SESEMQISTPRVLSQC-KGV 229 (340)
Q Consensus 162 ~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~-~~g~v~~w----G~n~~gql------g~~~~~~~~p~~i~~~-~~~ 229 (340)
.... +....++..|..|++-.+--++++ .+|.||=. .++-+++- ..+.-....|..+... ...
T Consensus 168 f~~~-----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 168 FNTS-----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccc-----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 1111 111233344554443333333333 44444322 11222221 1122222344433333 346
Q ss_pred ccEEEEEecCce--EEEEcCCCcEEEEcCCCCCCCCCCccc--cCceeeccc-ccCCcccCCCCCeEEEEc------cCC
Q psy5892 230 SRIVDVASGGSA--CTMLNDEGLVYSWGYGLLGQGPKVSRS--MKPTLIPST-LFGQHQFNPKSKVESLIA------GPC 298 (340)
Q Consensus 230 ~~i~~i~~g~~~--~~~lt~~g~v~~~G~g~~g~~~~~~~~--~~p~~~~~~-~~~~~~~~~~~~i~~i~~------G~~ 298 (340)
++|.+|+..... .+++++.|.|-+|--+.-|.+...... ..-...... ...+..-..-..|++|+. -+-
T Consensus 243 dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~~~es~~l 322 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLSASESNDL 322 (1311)
T ss_pred CcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccCcccccce
Confidence 689999998776 556788898877754333332211000 000000000 000000001234555553 467
Q ss_pred ceEEEecCC-cEEEEeCC
Q psy5892 299 TFGAITNFG-HLYMWGKN 315 (340)
Q Consensus 299 ~~~~lt~~g-~vy~wG~n 315 (340)
|.+|+|..| ++|.-|..
T Consensus 323 ~LvA~ts~GvRlYfs~s~ 340 (1311)
T KOG1900|consen 323 HLVAITSTGVRLYFSTSS 340 (1311)
T ss_pred eEEEEecCCeEEEEeccC
Confidence 889999999 67766653
No 22
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=92.68 E-value=2.7 Score=44.97 Aligned_cols=220 Identities=13% Similarity=0.142 Sum_probs=104.0
Q ss_pred CCCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCc---------eecccccc---CCCc---eEEEE
Q psy5892 67 STQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKW---------FCHNIADL---EGEK---IMDAV 131 (340)
Q Consensus 67 ~~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~---------~~~~~~~~---~~~~---i~~i~ 131 (340)
....+.|....+.-++.+.+|+||+--....+.- ...-...+... .-..+..| ++-. .++=.
T Consensus 488 ~a~A~~VgLs~drLFvADseGkLYsa~l~~~~~~---~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~ 564 (1774)
T PF11725_consen 488 KAQAQSVGLSNDRLFVADSEGKLYSADLPAAQDN---EPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDR 564 (1774)
T ss_pred chhhhheeecCCeEEEEeCCCCEEecccccccCC---CcceEeccccccccccccccccceeeccccCCCCeeeEEEecc
Confidence 4488899999999999999999999655433210 00000000000 00001111 0111 22223
Q ss_pred ccCCeeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCC
Q psy5892 132 CGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQIS 211 (340)
Q Consensus 132 ~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg 211 (340)
.|..|++.|.+++.-|--|||-...|=..+..-...+ .....-.-+..+..-.++|.+ |+|+.|-....
T Consensus 565 ~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~------~~p~~~~~ldl~r~G~v~L~~-G~i~~wD~ttq---- 633 (1774)
T PF11725_consen 565 QGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKP------PAPAPHEILDLGRAGLVGLQD-GKIQYWDSTTQ---- 633 (1774)
T ss_pred CCceeeccccccCCccCCCCcccceeEeeccCCCCCC------CCCChHHhhccccccceeecc-ceEeeecCcch----
Confidence 5667777777777666666664432221111000000 000011122245566677775 99999964321
Q ss_pred CCCccccCceEeecccCcccEEEEEecCceEEEEcCCCcEEEEc----CCCCCCCCCCccccCceeecccccCCc-ccCC
Q psy5892 212 ESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWG----YGLLGQGPKVSRSMKPTLIPSTLFGQH-QFNP 286 (340)
Q Consensus 212 ~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G----~g~~g~~~~~~~~~~p~~~~~~~~~~~-~~~~ 286 (340)
.+.-.- ...|.++.-|-+.-+.+.++|+|---- +..+-.+....... |..-...-++.. .-.+
T Consensus 634 -----~W~~~~------~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~-~~~r~~~e~G~~l~Gl~ 701 (1774)
T PF11725_consen 634 -----CWKDAG------VKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFAL-PQRRNKVELGDALEGLE 701 (1774)
T ss_pred -----hhhhcc------CcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCccccc-ccccCCCCCCccccCCC
Confidence 111111 123444555666666666677765443 22222222222211 111111111110 0112
Q ss_pred CCCeEEEE-ccCCceEEEecCCcEEEE
Q psy5892 287 KSKVESLI-AGPCTFGAITNFGHLYMW 312 (340)
Q Consensus 287 ~~~i~~i~-~G~~~~~~lt~~g~vy~w 312 (340)
+..|..++ ++.+++++|++.|++-+.
T Consensus 702 ~~~i~a~Avv~~~~fvald~qg~lt~h 728 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALDDQGDLTAH 728 (1774)
T ss_pred cCcceeEEEEcCCceEEeccCCccccc
Confidence 55667666 478899999999987654
No 23
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.21 E-value=1.7 Score=36.61 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=24.4
Q ss_pred cccEEEEEecCceEEEEcCCCcEEEEc
Q psy5892 229 VSRIVDVASGGSACTMLNDEGLVYSWG 255 (340)
Q Consensus 229 ~~~i~~i~~g~~~~~~lt~~g~v~~~G 255 (340)
..++..+.|...+.+++|++|.+|+|-
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWn 38 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWN 38 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEE
Confidence 457888999999999999999999995
No 24
>KOG0646|consensus
Probab=90.05 E-value=16 Score=33.86 Aligned_cols=165 Identities=16% Similarity=0.166 Sum_probs=80.0
Q ss_pred CCCeEEEEeCCCeEEEEe--CCCcEEEEecCCCCCccCCCCCCccccCCceeccccccC--CCceEEEEccCCe--eEEE
Q psy5892 67 STQIKHLATGRAHTIVIT--DNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLE--GEKIMDAVCGQDH--TLFL 140 (340)
Q Consensus 67 ~~~i~~i~~g~~~~~~lt--~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~g~~~--~~~l 140 (340)
-..|+.+....+-++++| +||.|+.|=-..-- ..+.+. .+.++..+. ...|.++.+|..- ..++
T Consensus 123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv------~a~~~~----~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~ 192 (476)
T KOG0646|consen 123 YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV------SADNDH----SVKPLHIFSDHTLSITDLQIGSGGTNARLY 192 (476)
T ss_pred ccceeEEEEeCCCcEEEecCCCccEEEEEEEeec------ccccCC----CccceeeeccCcceeEEEEecCCCccceEE
Confidence 567888888888888887 68999999643211 111111 111111111 3456666655442 1122
Q ss_pred --EcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEE--EEEecCcEEEEEeCCCCEEEEeCCCC-CCCC-CC-
Q psy5892 141 --TESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIV--KLSSAVDCVLAVSDKGDVFGWGNSEY-GQIS-ES- 213 (340)
Q Consensus 141 --t~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~--~i~~g~~~~~~l~~~g~v~~wG~n~~-gqlg-~~- 213 (340)
..|..+-+|- +..+ ..+.....+..|. -+.-...++++=+++|++|..-.... +|-. ..
T Consensus 193 TaS~D~t~k~wd------lS~g--------~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~ 258 (476)
T KOG0646|consen 193 TASEDRTIKLWD------LSLG--------VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQ 258 (476)
T ss_pred EecCCceEEEEE------eccc--------eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccc
Confidence 2233344443 1111 1111111222333 33446777777888898887543221 1110 00
Q ss_pred CccccCceEeecc---cCcccEEEEEecCceEEEE--cCCCcEEEEc
Q psy5892 214 EMQISTPRVLSQC---KGVSRIVDVASGGSACTML--NDEGLVYSWG 255 (340)
Q Consensus 214 ~~~~~~p~~i~~~---~~~~~i~~i~~g~~~~~~l--t~~g~v~~~G 255 (340)
......-+.+..+ .+...|..++...+-++.+ .+||+|.+|-
T Consensus 259 k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 259 KGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 1111111222211 1124677777777776666 6788888886
No 25
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.57 E-value=2.9 Score=35.26 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=26.2
Q ss_pred CccEEEEEecCcEEEEEeCCCCEEEEeCCC
Q psy5892 177 GERIVKLSSAVDCVLAVSDKGDVFGWGNSE 206 (340)
Q Consensus 177 ~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~ 206 (340)
+.++..+.+..++.+++|.+|.+|+|-...
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 347888999999999999999999997543
No 26
>KOG0291|consensus
Probab=82.12 E-value=57 Score=32.51 Aligned_cols=125 Identities=20% Similarity=0.217 Sum_probs=68.2
Q ss_pred EEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEE--EcCCcEEEEEeCCCCCC
Q psy5892 80 TIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFL--TESGKVYSCGWGADGQT 157 (340)
Q Consensus 80 ~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~l--t~~g~vy~wG~n~~gql 157 (340)
++.+...|.-.++|....|||..=.-..+.+ ...+-..+ ..+..++-..+-.++. .+||+|-+|-...-=
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsY----VlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-- 383 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESY----VLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-- 383 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccce----eeeccccc--cceeeEEECCCCcEEEeccCCCcEEEEeccCce--
Confidence 4445566888888888888876432111111 11111112 4455555444433333 457777777632200
Q ss_pred CCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeec
Q psy5892 158 GLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQ 225 (340)
Q Consensus 158 g~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~ 225 (340)
...+... .......+++..-.+..+...-||.|-+|-...|- +-.....|.++.+
T Consensus 384 ------C~vTFte---Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr----NfRTft~P~p~Qf 438 (893)
T KOG0291|consen 384 ------CFVTFTE---HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR----NFRTFTSPEPIQF 438 (893)
T ss_pred ------EEEEecc---CCCceEEEEEEecCCEEEEeecCCeEEeeeecccc----eeeeecCCCceee
Confidence 0011111 22344677788888888888899999999876653 3334445555443
No 27
>KOG4693|consensus
Probab=80.88 E-value=28 Score=30.10 Aligned_cols=61 Identities=18% Similarity=0.295 Sum_probs=31.4
Q ss_pred eEEEEeCCCcEEEEecCCC--CCccCCCCCCccccCCceeccccccCCCceEEEE--ccCCeeEEEEcCCcEEEEE
Q psy5892 79 HTIVITDNEGAFTFGNNSF--GQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAV--CGQDHTLFLTESGKVYSCG 150 (340)
Q Consensus 79 ~~~~lt~~g~l~~~G~n~~--gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~--~g~~~~~~lt~~g~vy~wG 150 (340)
|+.+.- ++++|.||-.++ |.+-....-+ ++. ......+|.-.. +-+.|++++- ..++|.+|
T Consensus 82 HtvV~y-~d~~yvWGGRND~egaCN~Ly~fD--------p~t-~~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFG 146 (392)
T KOG4693|consen 82 HTVVEY-QDKAYVWGGRNDDEGACNLLYEFD--------PET-NVWKKPEVEGFVPGARDGHSACVW-GNQMYIFG 146 (392)
T ss_pred ceEEEE-cceEEEEcCccCcccccceeeeec--------ccc-ccccccceeeecCCccCCceeeEE-CcEEEEec
Confidence 555554 478999996443 3332211111 111 011123333333 4566888886 56799998
No 28
>KOG1408|consensus
Probab=80.38 E-value=51 Score=32.72 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.0
Q ss_pred CCCeEEEEeCCC----eEEEEeCCCcEEEEec
Q psy5892 67 STQIKHLATGRA----HTIVITDNEGAFTFGN 94 (340)
Q Consensus 67 ~~~i~~i~~g~~----~~~~lt~~g~l~~~G~ 94 (340)
+.....|+||.. .+++||..|.|--|-.
T Consensus 217 ~n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 217 FNEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred cchhhhhhhcCcccccceEEEecccceeeech
Confidence 556889999999 8999999999887754
No 29
>KOG0649|consensus
Probab=78.13 E-value=34 Score=29.24 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=39.7
Q ss_pred CceEEEEccCCeeEEEEcCCcEEEEEeCCCCC-CCCCCCCCeeeceeec-ccccCccEEEEEecCcEEEEEeCCCCEEEE
Q psy5892 125 EKIMDAVCGQDHTLFLTESGKVYSCGWGADGQ-TGLGHLNNQETPCLVR-GEIEGERIVKLSSAVDCVLAVSDKGDVFGW 202 (340)
Q Consensus 125 ~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gq-lg~~~~~~~~~p~~~~-~~~~~~~i~~i~~g~~~~~~l~~~g~v~~w 202 (340)
.+|-.++.-+.|. +..-||.||.|-+++.-. ++....-....|.... ...++.+-..+.--.+..+..--|+.+|+|
T Consensus 63 gpiy~~~f~d~~L-ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 63 GPIYYLAFHDDFL-LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQV 141 (325)
T ss_pred CCeeeeeeehhhe-eeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEE
Confidence 4555665555543 344579999999998765 4432222223333331 112222222333234444444456777777
Q ss_pred e
Q psy5892 203 G 203 (340)
Q Consensus 203 G 203 (340)
-
T Consensus 142 d 142 (325)
T KOG0649|consen 142 D 142 (325)
T ss_pred E
Confidence 5
No 30
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=76.77 E-value=7 Score=21.91 Aligned_cols=25 Identities=4% Similarity=0.215 Sum_probs=22.1
Q ss_pred CCeEEEEeCC-CeEEEEeCCCcEEEE
Q psy5892 68 TQIKHLATGR-AHTIVITDNEGAFTF 92 (340)
Q Consensus 68 ~~i~~i~~g~-~~~~~lt~~g~l~~~ 92 (340)
..+++|++|. ....+++.+|++|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4899999999 889999999999863
No 31
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=76.55 E-value=6.2 Score=22.13 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCeEEEEccC-CceEEEecCCcEEEE
Q psy5892 288 SKVESLIAGP-CTFGAITNFGHLYMW 312 (340)
Q Consensus 288 ~~i~~i~~G~-~~~~~lt~~g~vy~w 312 (340)
..+++|++|. ....+++.+|++|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4789999999 888899999999863
No 32
>PHA02713 hypothetical protein; Provisional
Probab=74.76 E-value=61 Score=31.66 Aligned_cols=13 Identities=8% Similarity=0.161 Sum_probs=9.8
Q ss_pred EEEcCCCcEEEEc
Q psy5892 243 TMLNDEGLVYSWG 255 (340)
Q Consensus 243 ~~lt~~g~v~~~G 255 (340)
.+..-+|+||+.|
T Consensus 458 ~~~~~~~~IYv~G 470 (557)
T PHA02713 458 GVVSHKDDIYVVC 470 (557)
T ss_pred cEEEECCEEEEEe
Confidence 3445578999998
No 33
>KOG0282|consensus
Probab=72.51 E-value=65 Score=30.21 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=14.4
Q ss_pred EcCCcEEEEEeCCCCCCCC
Q psy5892 141 TESGKVYSCGWGADGQTGL 159 (340)
Q Consensus 141 t~~g~vy~wG~n~~gqlg~ 159 (340)
+.+|+||.|+++..-.+..
T Consensus 451 dsdG~v~~wdwkt~kl~~~ 469 (503)
T KOG0282|consen 451 DSDGKVNFWDWKTTKLVSK 469 (503)
T ss_pred cCCccEEEeechhhhhhhc
Confidence 5679999999987655443
No 34
>KOG4441|consensus
Probab=72.15 E-value=81 Score=30.93 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=18.0
Q ss_pred EEEEccCCceEEEecCCcEEEEeC
Q psy5892 291 ESLIAGPCTFGAITNFGHLYMWGK 314 (340)
Q Consensus 291 ~~i~~G~~~~~~lt~~g~vy~wG~ 314 (340)
..+.....+.-+..-++++|+-|-
T Consensus 507 ~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 507 APMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred ccCccccccccEEEECCEEEEEec
Confidence 345566777777888899999875
No 35
>KOG0315|consensus
Probab=71.50 E-value=66 Score=27.66 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=40.0
Q ss_pred EEccCCeeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCc--EEEEEeCCCCEEEEeCC
Q psy5892 130 AVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVD--CVLAVSDKGDVFGWGNS 205 (340)
Q Consensus 130 i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~--~~~~l~~~g~v~~wG~n 205 (340)
+.....+.+.=+.+|.|++|--.++. ..-.+++ ..+..|.+++...+ ..+|.++.|+.|+|-.-
T Consensus 132 lhpnQteLis~dqsg~irvWDl~~~~----------c~~~liP--e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 132 LHPNQTELISGDQSGNIRVWDLGENS----------CTHELIP--EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred ecCCcceEEeecCCCcEEEEEccCCc----------cccccCC--CCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 34455556666778999999843321 1112222 12346777777654 56788999999999754
No 36
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=71.04 E-value=1.4e+02 Score=31.29 Aligned_cols=28 Identities=11% Similarity=0.168 Sum_probs=23.4
Q ss_pred CCCeEEEEeCCCe--EEEEeCCCcEEEEec
Q psy5892 67 STQIKHLATGRAH--TIVITDNEGAFTFGN 94 (340)
Q Consensus 67 ~~~i~~i~~g~~~--~~~lt~~g~l~~~G~ 94 (340)
...|.+|+....+ .++++.+|.|..|-.
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 5689999999888 899999998776654
No 37
>PHA03098 kelch-like protein; Provisional
Probab=70.83 E-value=1e+02 Score=29.70 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=11.0
Q ss_pred CeeEEEEcCCcEEEEEe
Q psy5892 135 DHTLFLTESGKVYSCGW 151 (340)
Q Consensus 135 ~~~~~lt~~g~vy~wG~ 151 (340)
.|+++. -++++|++|-
T Consensus 382 ~~~~~~-~~~~iYv~GG 397 (534)
T PHA03098 382 NPCVVN-VNNLIYVIGG 397 (534)
T ss_pred cceEEE-ECCEEEEECC
Confidence 445543 5789999983
No 38
>KOG1408|consensus
Probab=69.93 E-value=1.2e+02 Score=30.21 Aligned_cols=79 Identities=11% Similarity=0.121 Sum_probs=48.1
Q ss_pred CCCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCC----eeEEEEc
Q psy5892 67 STQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQD----HTLFLTE 142 (340)
Q Consensus 67 ~~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~----~~~~lt~ 142 (340)
..+|..++.....++++|.-++=..++.-..+ ..-....+-+-..-.+..+.......++||.. .+++||.
T Consensus 165 ss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~-----~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~ 239 (1080)
T KOG1408|consen 165 SSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQ-----SKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA 239 (1080)
T ss_pred ceeEEEEEEccCCceeeeeeeeeEEEEEeecc-----ccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec
Confidence 55888889999999999875543333221111 10111111111111234555678899999998 8999999
Q ss_pred CCcEEEEE
Q psy5892 143 SGKVYSCG 150 (340)
Q Consensus 143 ~g~vy~wG 150 (340)
.|.|.-|-
T Consensus 240 qGhLvEFS 247 (1080)
T KOG1408|consen 240 QGHLVEFS 247 (1080)
T ss_pred ccceeeec
Confidence 99987654
No 39
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=69.09 E-value=15 Score=19.48 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=20.9
Q ss_pred CCceEEEEccCCeeEEEEcCCcEEE
Q psy5892 124 GEKIMDAVCGQDHTLFLTESGKVYS 148 (340)
Q Consensus 124 ~~~i~~i~~g~~~~~~lt~~g~vy~ 148 (340)
++.|..|++|....++.|+.+-|-.
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEe
Confidence 3679999999999999998886654
No 40
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=67.13 E-value=1.1e+02 Score=28.56 Aligned_cols=201 Identities=14% Similarity=0.133 Sum_probs=91.0
Q ss_pred CCeEEEEeCC-CeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcE
Q psy5892 68 TQIKHLATGR-AHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKV 146 (340)
Q Consensus 68 ~~i~~i~~g~-~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v 146 (340)
.+|+.+.-.. ..-++|+++|.++..- -.|.. .+......... .....++-.+..+..-.++||.++++
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~--------~fsl~~~i~~~-~v~e~~i~~~~~~~~GivvLt~~~~~ 149 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF--------QFSLGEEIEEE-KVLECRIFAIWFYKNGIVVLTGNNRF 149 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce--------eechhhhcccc-CcccccccccccCCCCEEEECCCCeE
Confidence 4666665543 4677778888766652 22322 00000011110 11123343445565668899999999
Q ss_pred EEEEeCCCCCCCCCCCCCeeeceeecc---cccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEe
Q psy5892 147 YSCGWGADGQTGLGHLNNQETPCLVRG---EIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVL 223 (340)
Q Consensus 147 y~wG~n~~gqlg~~~~~~~~~p~~~~~---~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i 223 (340)
|.--..... .-.. .....|..... ......+..+......-+.+...+.++..-.+...+ +
T Consensus 150 ~~v~n~~~~-~~~~--~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-------------i 213 (410)
T PF04841_consen 150 YVVNNIDEP-VKLR--RLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-------------I 213 (410)
T ss_pred EEEeCcccc-chhh--ccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-------------c
Confidence 986322211 1000 00011221110 001111222222222333344445555443322111 2
Q ss_pred ecccCcccEEEEEec--CceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEE-ccCCce
Q psy5892 224 SQCKGVSRIVDVASG--GSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLI-AGPCTF 300 (340)
Q Consensus 224 ~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~-~G~~~~ 300 (340)
....++.+++.+ ..+.++++++|.+|+.-. .....-.++... ......++. ||+ .+
T Consensus 214 ---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss---------Df~~~~~e~~~~--------~~~~p~~~~WCG~-da 272 (410)
T PF04841_consen 214 ---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS---------DFSEKLCEFDTD--------SKSPPKQMAWCGN-DA 272 (410)
T ss_pred ---cCCCCeEEEEECCCCCEEEEEECCCCEEEEEC---------cccceeEEeecC--------cCCCCcEEEEECC-Cc
Confidence 224578888776 456788899999998631 111111111111 112334444 554 56
Q ss_pred EEEecCCcEEEEeCCC
Q psy5892 301 GAITNFGHLYMWGKNQ 316 (340)
Q Consensus 301 ~~lt~~g~vy~wG~n~ 316 (340)
+++.-...|...|...
T Consensus 273 v~l~~~~~l~lvg~~~ 288 (410)
T PF04841_consen 273 VVLSWEDELLLVGPDG 288 (410)
T ss_pred EEEEeCCEEEEECCCC
Confidence 6666566788887543
No 41
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=66.55 E-value=52 Score=28.79 Aligned_cols=109 Identities=17% Similarity=0.278 Sum_probs=64.7
Q ss_pred ecCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEec---CceEEEEcCCCcEEEEcCCCCCC
Q psy5892 185 SAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASG---GSACTMLNDEGLVYSWGYGLLGQ 261 (340)
Q Consensus 185 ~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g---~~~~~~lt~~g~v~~~G~g~~g~ 261 (340)
.+.-|-++...||.||--+.. .+-+|+-+ |+ ...++.+..| .-|.+++-.||..|.+-.++ .+
T Consensus 61 G~ap~dvapapdG~VWft~qg-~gaiGhLd-----P~-------tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI 126 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQG-TGAIGHLD-----PA-------TGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AI 126 (353)
T ss_pred CCCccccccCCCCceEEecCc-cccceecC-----CC-------CCceEEEecCCCCCCceEEECCCCCeeEecCcc-ee
Confidence 345678889999999965433 34455511 11 1234444433 34789999999999986543 33
Q ss_pred CCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEecCCcEEEEeCCC-CCcc
Q psy5892 262 GPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQ-YGQL 320 (340)
Q Consensus 262 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~-~GqL 320 (340)
....-.+...++.+.. .+.+-++-.+.+++..|+||-.|.+. ||.|
T Consensus 127 ~R~dpkt~evt~f~lp-------------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrL 173 (353)
T COG4257 127 GRLDPKTLEVTRFPLP-------------LEHADANLETAVFDPWGNLWFTGQIGAYGRL 173 (353)
T ss_pred EEecCcccceEEeecc-------------cccCCCcccceeeCCCccEEEeeccccceec
Confidence 2211111222222211 34455667789999999999999865 5655
No 42
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=66.21 E-value=1.8e+02 Score=30.59 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=33.8
Q ss_pred cEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEecCceEEEEcCCCcEEEE
Q psy5892 188 DCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSW 254 (340)
Q Consensus 188 ~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~ 254 (340)
.+.+.|+++|++|+ + . ..+ ...+.++.....|-++.|.+..+.+.
T Consensus 592 ~~~~GLs~~~~Ly~-n--~--------------~~l-----a~~~tSF~v~~~~Ll~TT~~h~l~fv 636 (928)
T PF04762_consen 592 RVLFGLSSNGRLYA-N--S--------------RLL-----ASNCTSFAVTDSFLLFTTTQHTLKFV 636 (928)
T ss_pred eEEEEECCCCEEEE-C--C--------------EEE-----ecCCceEEEEcCEEEEEecCceEEEE
Confidence 36888999999996 1 1 112 34788888889999999988887776
No 43
>KOG1274|consensus
Probab=65.38 E-value=1.7e+02 Score=30.02 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=43.3
Q ss_pred eEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEEEEeCCCc--EE
Q psy5892 13 FTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITDNEG--AF 90 (340)
Q Consensus 13 ~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~~lt~~g~--l~ 90 (340)
|+.++. +.||+ -|+++|++..-..-..... ...|..+.. . ...|..|++-..|.+.=+.++. +|
T Consensus 16 ~t~i~~-d~~ge-fi~tcgsdg~ir~~~~~sd--------~e~P~ti~~-~---g~~v~~ia~~s~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 16 LTLICY-DPDGE-FICTCGSDGDIRKWKTNSD--------EEEPETIDI-S---GELVSSIACYSNHFLTGSEQNTVLRY 81 (933)
T ss_pred eEEEEE-cCCCC-EEEEecCCCceEEeecCCc--------ccCCchhhc-c---CceeEEEeecccceEEeeccceEEEe
Confidence 444443 78998 8999998754433222211 134555553 1 6789999999998888888885 45
Q ss_pred EEec
Q psy5892 91 TFGN 94 (340)
Q Consensus 91 ~~G~ 94 (340)
.++.
T Consensus 82 ~fps 85 (933)
T KOG1274|consen 82 KFPS 85 (933)
T ss_pred eCCC
Confidence 5544
No 44
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=62.25 E-value=1.3e+02 Score=27.65 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=43.3
Q ss_pred ceeEEeecCC-eEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCC-eE
Q psy5892 3 KITDIACGYG-FTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRA-HT 80 (340)
Q Consensus 3 ~i~~v~~G~~-~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~-~~ 80 (340)
-+..|..|.. |..... +.||+ ++|..+. .|. -..+.+.. ...++.|..|.. +.
T Consensus 28 ~~~~i~~~~~~h~~~~~-s~Dgr-~~yv~~r--dg~------------------vsviD~~~---~~~v~~i~~G~~~~~ 82 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKF-SPDGR-YLYVANR--DGT------------------VSVIDLAT---GKVVATIKVGGNPRG 82 (369)
T ss_dssp EEEEEE-STTEEEEEE--TT-SS-EEEEEET--TSE------------------EEEEETTS---SSEEEEEE-SSEEEE
T ss_pred EEEEEcCCCCceeEEEe-cCCCC-EEEEEcC--CCe------------------EEEEECCc---ccEEEEEecCCCcce
Confidence 4677887765 554443 79998 7888853 222 23455544 557778888877 47
Q ss_pred EEEeCCCcEEEEecCCCCCcc
Q psy5892 81 IVITDNEGAFTFGNNSFGQCG 101 (340)
Q Consensus 81 ~~lt~~g~l~~~G~n~~gqlg 101 (340)
++++.||+...-+....+++.
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~ 103 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVS 103 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEE
T ss_pred EEEcCCCCEEEEEecCCCcee
Confidence 888999986665554444443
No 45
>KOG0293|consensus
Probab=57.31 E-value=1.6e+02 Score=27.26 Aligned_cols=70 Identities=10% Similarity=0.130 Sum_probs=40.4
Q ss_pred CCCeEEEEeCCCeEEEEe--CCCcEEEEecCCCCCccCCCCCCccccCCceeccccc--cCCCceEEEEccCCeeEEE--
Q psy5892 67 STQIKHLATGRAHTIVIT--DNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIAD--LEGEKIMDAVCGQDHTLFL-- 140 (340)
Q Consensus 67 ~~~i~~i~~g~~~~~~lt--~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~--~~~~~i~~i~~g~~~~~~l-- 140 (340)
..+|.+++...+.-++|. .+.++.-|-.-+ ...++.+.. ....-|+....|.+..++.
T Consensus 395 ~~~its~~iS~d~k~~LvnL~~qei~LWDl~e----------------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSG 458 (519)
T KOG0293|consen 395 EQPITSFSISKDGKLALVNLQDQEIHLWDLEE----------------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASG 458 (519)
T ss_pred cCceeEEEEcCCCcEEEEEcccCeeEEeecch----------------hhHHHHhhcccccceEEEeccCCCCcceEEec
Confidence 456777777777666665 456677775321 112222211 1124466666676655555
Q ss_pred EcCCcEEEEEeC
Q psy5892 141 TESGKVYSCGWG 152 (340)
Q Consensus 141 t~~g~vy~wG~n 152 (340)
++|++||.|-.-
T Consensus 459 SED~kvyIWhr~ 470 (519)
T KOG0293|consen 459 SEDSKVYIWHRI 470 (519)
T ss_pred CCCceEEEEEcc
Confidence 678999999843
No 46
>PHA03098 kelch-like protein; Provisional
Probab=57.29 E-value=1.1e+02 Score=29.53 Aligned_cols=15 Identities=33% Similarity=0.782 Sum_probs=10.5
Q ss_pred ceEEEEcCCCcEEEEc
Q psy5892 240 SACTMLNDEGLVYSWG 255 (340)
Q Consensus 240 ~~~~~lt~~g~v~~~G 255 (340)
.|+++ .-+|++|++|
T Consensus 382 ~~~~~-~~~~~iYv~G 396 (534)
T PHA03098 382 NPCVV-NVNNLIYVIG 396 (534)
T ss_pred cceEE-EECCEEEEEC
Confidence 44444 4578999998
No 47
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=56.18 E-value=1.6e+02 Score=26.79 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.2
Q ss_pred CCceEEEecCCcEEEE
Q psy5892 297 PCTFGAITNFGHLYMW 312 (340)
Q Consensus 297 ~~~~~~lt~~g~vy~w 312 (340)
+.+.++.+.+|+||++
T Consensus 361 ~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 361 GDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCceEEEe
Confidence 3568888999999986
No 48
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=56.11 E-value=1.4e+02 Score=26.56 Aligned_cols=18 Identities=17% Similarity=-0.034 Sum_probs=11.9
Q ss_pred ceEEEecCCcEEEEeCCC
Q psy5892 299 TFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 299 ~~~~lt~~g~vy~wG~n~ 316 (340)
++.+...++++|+.|-.+
T Consensus 216 ~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 216 AASIKINESLLLCIGGFN 233 (323)
T ss_pred eeEEEECCCEEEEECCcC
Confidence 344455678999998643
No 49
>PHA02713 hypothetical protein; Provisional
Probab=55.33 E-value=81 Score=30.80 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=10.4
Q ss_pred EEEecCCcEEEEeCC
Q psy5892 301 GAITNFGHLYMWGKN 315 (340)
Q Consensus 301 ~~lt~~g~vy~wG~n 315 (340)
.+..-+|+||+.|-.
T Consensus 458 ~~~~~~~~IYv~GG~ 472 (557)
T PHA02713 458 GVVSHKDDIYVVCDI 472 (557)
T ss_pred cEEEECCEEEEEeCC
Confidence 344556899999853
No 50
>KOG2280|consensus
Probab=54.94 E-value=2.4e+02 Score=28.45 Aligned_cols=70 Identities=19% Similarity=0.106 Sum_probs=39.7
Q ss_pred ceEEEEccCCe-eEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeC
Q psy5892 126 KIMDAVCGQDH-TLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGN 204 (340)
Q Consensus 126 ~i~~i~~g~~~-~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~ 204 (340)
+++.+.=.+.+ -++++++|.++++|.- |.-.... .+-......+|.....-.+-.++++.+|++++--.
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-----ge~ie~~-----svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~ 154 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLL-----GEFIESN-----SVGFESQMSDIVECRFFHNGVAVLTVSGQVILING 154 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecc-----hhhhccc-----ccccccccCceeEEEEecCceEEEecCCcEEEEcC
Confidence 44444434444 5688999999998832 1100000 01001223345555555577888999999998754
Q ss_pred C
Q psy5892 205 S 205 (340)
Q Consensus 205 n 205 (340)
+
T Consensus 155 ~ 155 (829)
T KOG2280|consen 155 V 155 (829)
T ss_pred C
Confidence 4
No 51
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=54.93 E-value=16 Score=21.11 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=15.8
Q ss_pred cEEEEEeCCCCEEEEeCCC
Q psy5892 188 DCVLAVSDKGDVFGWGNSE 206 (340)
Q Consensus 188 ~~~~~l~~~g~v~~wG~n~ 206 (340)
-+.++++.+|.+|+.|...
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 3578999999999999643
No 52
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=54.71 E-value=46 Score=22.03 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=23.7
Q ss_pred eeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCC
Q psy5892 169 CLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSE 206 (340)
Q Consensus 169 ~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~ 206 (340)
+.+.......+-+.+-+...++++|++.|.-|+|-.+.
T Consensus 16 r~~~~~~tp~P~~n~LsNg~y~~mvt~~G~GySw~~~~ 53 (66)
T PF06204_consen 16 RLITTPDTPAPWVNVLSNGSYGVMVTNSGSGYSWAKNS 53 (66)
T ss_dssp --ES-S--SS--EEEE-SSSEEEEEETTSBEEEEES-T
T ss_pred cccCCCCCCCCEEEEeeCCcEEEEEcCCCceeeccccc
Confidence 33333444557788888889999999999999997654
No 53
>KOG1034|consensus
Probab=53.04 E-value=40 Score=30.03 Aligned_cols=58 Identities=16% Similarity=0.333 Sum_probs=38.3
Q ss_pred EEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEecCce--EEEEcCCCcEEEEc
Q psy5892 190 VLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSA--CTMLNDEGLVYSWG 255 (340)
Q Consensus 190 ~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~--~~~lt~~g~v~~~G 255 (340)
.++..+.|+||+|-... .++...++.... .....|.+.+-..+- .+++++++.||.|-
T Consensus 322 la~gnq~g~v~vwdL~~-------~ep~~~ttl~~s-~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDN-------NEPPKCTTLTHS-KSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred HhhccCCCcEEEEECCC-------CCCccCceEEec-cccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 34566789999997653 122244444444 336788888887655 45558899999984
No 54
>KOG0293|consensus
Probab=52.20 E-value=2e+02 Score=26.73 Aligned_cols=70 Identities=23% Similarity=0.311 Sum_probs=38.7
Q ss_pred cCccEEEEEecCcEEEEEe--CCCCEEEEeCCCCCCCCCCCccccCceEeec-ccCcccEEEEEecCceEEEE--cCCCc
Q psy5892 176 EGERIVKLSSAVDCVLAVS--DKGDVFGWGNSEYGQISESEMQISTPRVLSQ-CKGVSRIVDVASGGSACTML--NDEGL 250 (340)
Q Consensus 176 ~~~~i~~i~~g~~~~~~l~--~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~-~~~~~~i~~i~~g~~~~~~l--t~~g~ 250 (340)
...+|.+++..++--+||. .+.++..|-.-+. ..+.+-.. ..+.--|.+--.|.+..++. .+|++
T Consensus 394 e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~----------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k 463 (519)
T KOG0293|consen 394 EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN----------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK 463 (519)
T ss_pred ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh----------hHHHHhhcccccceEEEeccCCCCcceEEecCCCce
Confidence 4457887777666555554 5778999965321 11111111 11112344444455545544 78999
Q ss_pred EEEEc
Q psy5892 251 VYSWG 255 (340)
Q Consensus 251 v~~~G 255 (340)
||.|-
T Consensus 464 vyIWh 468 (519)
T KOG0293|consen 464 VYIWH 468 (519)
T ss_pred EEEEE
Confidence 99996
No 55
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=51.50 E-value=26 Score=24.13 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=28.9
Q ss_pred CCCeEEEEcc-CCceEEEecCCcEEEEeCCCCCcccCC
Q psy5892 287 KSKVESLIAG-PCTFGAITNFGHLYMWGKNQYGQLGLG 323 (340)
Q Consensus 287 ~~~i~~i~~G-~~~~~~lt~~g~vy~wG~n~~GqLG~g 323 (340)
+..-..|+|. ..-.++|+++|.+|.-+--+.|++=+.
T Consensus 15 ~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~ati~ 52 (81)
T PF03785_consen 15 GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNATIN 52 (81)
T ss_dssp T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEEEEE
T ss_pred cccEEEEEecCCCcEEEEecCCEEEEEEEecCceEEEE
Confidence 4566799999 888889999999999998668887654
No 56
>PRK05560 DNA gyrase subunit A; Validated
Probab=51.39 E-value=3e+02 Score=28.46 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=84.4
Q ss_pred CCCeEEEEeCC-----CeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEE--ccCCeeEE
Q psy5892 67 STQIKHLATGR-----AHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAV--CGQDHTLF 139 (340)
Q Consensus 67 ~~~i~~i~~g~-----~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~--~g~~~~~~ 139 (340)
+++|+.+.+-. ...+++|++|.+-..-...+-....+ ......+. ++..++.+. ...++.++
T Consensus 589 ~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~---------G~~~ikLk--e~D~lv~v~~~~~~d~lll 657 (805)
T PRK05560 589 GEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSN---------GIIAINLD--EGDELIGVRLTDGDDDILL 657 (805)
T ss_pred CceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccC---------CceeeccC--CCCEEEEEEEeCCCCEEEE
Confidence 77888888755 35788899997766543332110000 00001111 134454443 34456899
Q ss_pred EEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecC---cEEEEEeCCCCEEEEeCCCCCCCCCCCcc
Q psy5892 140 LTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAV---DCVLAVSDKGDVFGWGNSEYGQISESEMQ 216 (340)
Q Consensus 140 lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~---~~~~~l~~~g~v~~wG~n~~gqlg~~~~~ 216 (340)
+|+.|++|.+-...--..+.... ...+...-.++.|+.+.... .+.+++|++|.+.-.-.+.+-........
T Consensus 658 ~T~~Gr~~r~~~~eIp~~gr~~~-----Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG 732 (805)
T PRK05560 658 ATKNGKAIRFPESDVRPMGRTAR-----GVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKG 732 (805)
T ss_pred EECCCcEEEEEhhhcCccCcccC-----CcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCc
Confidence 99999999886544333332111 11111112345666666543 25778888887766543332111110000
Q ss_pred ccCceEeecccCcccEEEEE--ecCceEEEEcCCCcEEEEc
Q psy5892 217 ISTPRVLSQCKGVSRIVDVA--SGGSACTMLNDEGLVYSWG 255 (340)
Q Consensus 217 ~~~p~~i~~~~~~~~i~~i~--~g~~~~~~lt~~g~v~~~G 255 (340)
. ..+........+..+. .+.+..+++|.+|.+.-+-
T Consensus 733 ~---~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~ 770 (805)
T PRK05560 733 V---ITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTR 770 (805)
T ss_pred E---EeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEE
Confidence 0 0111111123333332 2445578888888887764
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=50.96 E-value=1.9e+02 Score=26.22 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=29.7
Q ss_pred CcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEecCceEEEEcCCCcEEEE
Q psy5892 187 VDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSW 254 (340)
Q Consensus 187 ~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~ 254 (340)
..+.++.+.+|.||++-... |++-. ..+. ....-...-.......++.+.+|+||++
T Consensus 320 g~~l~~~~~~G~l~~~d~~t-G~~~~---------~~~~-~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSRED-GSFVA---------RLKT-DGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEEE---------EEEc-CCCccccCCEEECCEEEEEeCCceEEEe
Confidence 35667778899999985432 21100 0110 0000011111223467888999999986
No 58
>KOG0646|consensus
Probab=48.67 E-value=2.4e+02 Score=26.54 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=73.7
Q ss_pred CeEEEEeCCCeEEEE--eCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEE--EcCC
Q psy5892 69 QIKHLATGRAHTIVI--TDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFL--TESG 144 (340)
Q Consensus 69 ~i~~i~~g~~~~~~l--t~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~l--t~~g 144 (340)
++..+++...-.+++ |..|+||.|--+. |.| .......+ ..|..+...++-++++ .+||
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~L--------------L~v~~aHY--Q~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSS-GIL--------------LNVLSAHY--QSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEecc-ccH--------------HHHHHhhc--cceeEEEEeCCCcEEEecCCCc
Confidence 466666655544433 4678999996543 221 00011222 4455555555545555 5689
Q ss_pred cEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcE----EEEEeCCCCEEEEeCCCCCCCCCCCccccCc
Q psy5892 145 KVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDC----VLAVSDKGDVFGWGNSEYGQISESEMQISTP 220 (340)
Q Consensus 145 ~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~----~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p 220 (340)
.|++|---.-=+ ........|..... --...|.++.+|.-- .+-...|..+-+|-... | ..-
T Consensus 146 ~V~vW~l~~lv~---a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~----g------~LL 211 (476)
T KOG0646|consen 146 AVLVWLLTDLVS---ADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL----G------VLL 211 (476)
T ss_pred cEEEEEEEeecc---cccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEecc----c------eee
Confidence 999997432110 01111233333331 123468887776552 12222444555553321 1 111
Q ss_pred eEeecccCcccEEEEE--ecCceEEEEcCCCcEEEEc
Q psy5892 221 RVLSQCKGVSRIVDVA--SGGSACTMLNDEGLVYSWG 255 (340)
Q Consensus 221 ~~i~~~~~~~~i~~i~--~g~~~~~~lt~~g~v~~~G 255 (340)
..+.+ ...|..++ -+..+.++=+++|++|..-
T Consensus 212 lti~f---p~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 212 LTITF---PSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred EEEec---CCcceeEEEcccccEEEecCCcceEEeee
Confidence 11112 22333333 3566777778899888765
No 59
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=48.54 E-value=37 Score=17.87 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=13.6
Q ss_pred eeEEEEcCCcEEEEEeCC
Q psy5892 136 HTLFLTESGKVYSCGWGA 153 (340)
Q Consensus 136 ~~~~lt~~g~vy~wG~n~ 153 (340)
+.++++.+|.||+.-.++
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 567888899999876444
No 60
>KOG1240|consensus
Probab=48.52 E-value=3.8e+02 Score=28.88 Aligned_cols=119 Identities=17% Similarity=0.260 Sum_probs=63.5
Q ss_pred CceEEEEccCCe-eEEE--EcCCcEEEEEeCCCCCCCCC-CCCCeeeceeecccccCccEEEEEe---cCcEEEEEeCCC
Q psy5892 125 EKIMDAVCGQDH-TLFL--TESGKVYSCGWGADGQTGLG-HLNNQETPCLVRGEIEGERIVKLSS---AVDCVLAVSDKG 197 (340)
Q Consensus 125 ~~i~~i~~g~~~-~~~l--t~~g~vy~wG~n~~gqlg~~-~~~~~~~p~~~~~~~~~~~i~~i~~---g~~~~~~l~~~g 197 (340)
..+.+++....| ++++ .+||.|-+|-.-.- .|.+ ....+. +. ...+..+..+.. +..++++ ++||
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~--~~~~~s~rS~l--ty---s~~~sr~~~vt~~~~~~~~Av~-t~DG 1120 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL--EGEGGSARSEL--TY---SPEGSRVEKVTMCGNGDQFAVS-TKDG 1120 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhh--hcCcceeeeeE--EE---eccCCceEEEEeccCCCeEEEE-cCCC
Confidence 456688888888 7776 45899999975432 2221 111111 11 113334555544 3444554 8999
Q ss_pred CEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEecC-----ceEEEEcCCCcEEEEc
Q psy5892 198 DVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGG-----SACTMLNDEGLVYSWG 255 (340)
Q Consensus 198 ~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~~G 255 (340)
.|-..+-+.+.+-- ....-.+++.......+++..+-. .-.++.|..+.+..|+
T Consensus 1121 ~v~~~~id~~~~~~----~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D 1179 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSK----RVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWD 1179 (1431)
T ss_pred eEEEEEcccccccc----ceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEec
Confidence 99888766542111 111111222222234455555432 2345668889999997
No 61
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=47.43 E-value=3.4e+02 Score=28.01 Aligned_cols=170 Identities=12% Similarity=0.107 Sum_probs=83.5
Q ss_pred CCCeEEEEeC-----CCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEE--ccCCeeEE
Q psy5892 67 STQIKHLATG-----RAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAV--CGQDHTLF 139 (340)
Q Consensus 67 ~~~i~~i~~g-----~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~--~g~~~~~~ 139 (340)
+++|+.+.+- ....+++|++|.+--.-.+.+-..... ....-.+. ++..++.+. ...++.++
T Consensus 587 ~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~---------G~~aiklk--e~D~lv~v~~~~~~d~lll 655 (800)
T TIGR01063 587 DERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSN---------GIIAIKLD--DGDELISVRLTSGDDEVML 655 (800)
T ss_pred CCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccC---------CcccccCC--CCCEEEEEEEeCCCCEEEE
Confidence 6778877762 235788899997776654333110000 00000011 134444433 34456889
Q ss_pred EEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCCCCccc
Q psy5892 140 LTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISESEMQI 217 (340)
Q Consensus 140 lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~ 217 (340)
+|+.|++|.+-...-...+..... ......-.++.|+.+..- ..+.+++|++|.+.-.-...+-........
T Consensus 656 ~Ts~Gr~~r~~v~eIp~~gr~~~G-----v~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kG- 729 (800)
T TIGR01063 656 GSKNGKAVRFPEEDVRPMGRAARG-----VRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKG- 729 (800)
T ss_pred EECCCcEEEEEhhhcCCcCCCCCC-----eecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcc-
Confidence 999999998865544433332211 111112244566666553 335777888887776644332211110000
Q ss_pred cCceEeecccCcccEEEEE--ecCceEEEEcCCCcEEEEc
Q psy5892 218 STPRVLSQCKGVSRIVDVA--SGGSACTMLNDEGLVYSWG 255 (340)
Q Consensus 218 ~~p~~i~~~~~~~~i~~i~--~g~~~~~~lt~~g~v~~~G 255 (340)
-..+........+..+. ...+..++++.+|.+..+-
T Consensus 730 --v~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~ 767 (800)
T TIGR01063 730 --VKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTS 767 (800)
T ss_pred --eEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEee
Confidence 01111111112333322 2344577888888887764
No 62
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=46.51 E-value=1.3e+02 Score=22.83 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=38.7
Q ss_pred CCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEE
Q psy5892 68 TQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVY 147 (340)
Q Consensus 68 ~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy 147 (340)
.+.+++.|=..+.+.+..||.|-+--... .+...-.+.......|.--.+-...-+|+++.|+||
T Consensus 2 ~R~~~Ly~~~~~~L~I~~~G~V~Gt~~~~---------------~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly 66 (126)
T smart00442 2 KRLRQLYCRNGQHLQILPDGTVDGTRDES---------------SSFTILEIIAVAVGVVAIKGVASCRYLCMNKCGKLY 66 (126)
T ss_pred ceEEEEEeCCCeEEEEcCCceEecccCCC---------------CcceEEEEEeccCCEEEEEEcccceEEEECCCCCEE
Confidence 35678888776778888888776542211 011122222222233443344556788999999999
Q ss_pred E
Q psy5892 148 S 148 (340)
Q Consensus 148 ~ 148 (340)
.
T Consensus 67 ~ 67 (126)
T smart00442 67 G 67 (126)
T ss_pred E
Confidence 7
No 63
>KOG2111|consensus
Probab=45.03 E-value=2.3e+02 Score=25.34 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=79.8
Q ss_pred cceeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEE
Q psy5892 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTI 81 (340)
Q Consensus 2 ~~i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~ 81 (340)
..|+.|-.-+.+.+++| ..+++||.++.| -++ -..++... +.+ - -+.+
T Consensus 95 ~~I~~V~l~r~riVvvl---~~~I~VytF~~n--~k~-----------------l~~~et~~---NPk--G-----lC~~ 142 (346)
T KOG2111|consen 95 SEIKAVKLRRDRIVVVL---ENKIYVYTFPDN--PKL-----------------LHVIETRS---NPK--G-----LCSL 142 (346)
T ss_pred cceeeEEEcCCeEEEEe---cCeEEEEEcCCC--hhh-----------------eeeeeccc---CCC--c-----eEee
Confidence 46899999999999996 445456666544 111 11111111 111 1 2233
Q ss_pred EEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCC-
Q psy5892 82 VITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLG- 160 (340)
Q Consensus 82 ~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~- 160 (340)
.-+.+-.+.++.....||+-..+....... ...++...-+.-.+++|+.+|.+.+-++. .|-|=+.
T Consensus 143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~~------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt-kGTLIRIF 209 (346)
T KOG2111|consen 143 CPTSNKSLLAFPGFKTGQVQIVDLASTKPN------------APSIINAHDSDIACVALNLQGTLVATAST-KGTLIRIF 209 (346)
T ss_pred cCCCCceEEEcCCCccceEEEEEhhhcCcC------------CceEEEcccCceeEEEEcCCccEEEEecc-CcEEEEEE
Confidence 334556788888888888643321111000 12344444555567778888877765532 1211000
Q ss_pred CCCCeeeceeecccccCccEEEEEecCc--EEEEEeCCCCEEEEeCCC
Q psy5892 161 HLNNQETPCLVRGEIEGERIVKLSSAVD--CVLAVSDKGDVFGWGNSE 206 (340)
Q Consensus 161 ~~~~~~~p~~~~~~~~~~~i~~i~~g~~--~~~~l~~~g~v~~wG~n~ 206 (340)
+...-..-.++......-.|-.|+...+ ..++..+.|.|..|+...
T Consensus 210 dt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 210 DTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 0000011111222223334666665544 345677889999998643
No 64
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=44.54 E-value=1.3e+02 Score=22.41 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=40.5
Q ss_pred eEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEE
Q psy5892 70 IKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSC 149 (340)
Q Consensus 70 i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~w 149 (340)
.+++.|-..+.+.+..+|.|-+-+.... .........+. ...|.--++-...-+++++.|+||.-
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~~------------~~s~~~i~~~~---~g~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDNS------------PYSVFEIHSVG---FGVVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTTS------------TTGEEEEEEEE---TTEEEEEETTTTEEEEEBTTSBEEEE
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcCc------------ceeEEEEEecc---ceEEEEEEecceEEEEECCCCeEccc
Confidence 5678888888999999999988765311 00111111121 22333334444677999999999973
No 65
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=40.05 E-value=3.2e+02 Score=25.53 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=36.9
Q ss_pred ccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEecCceEEEEcCCCcEEEEc
Q psy5892 178 ERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWG 255 (340)
Q Consensus 178 ~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G 255 (340)
.++..|+.. +.+..+++++|++|+.= .+..+ .-..........+..-..||.+ ++++.-+..|...|
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~s-sDf~~---------~~~e~~~~~~~~p~~~~WCG~d-av~l~~~~~l~lvg 285 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVS-SDFSE---------KLCEFDTDSKSPPKQMAWCGND-AVVLSWEDELLLVG 285 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEE-Ccccc---------eeEEeecCcCCCCcEEEEECCC-cEEEEeCCEEEEEC
Confidence 367776665 45677788899999863 22211 1111111111233444578876 44444466788877
No 66
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=39.61 E-value=31 Score=20.73 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=11.8
Q ss_pred CCceEEEecCCcEEEEeC
Q psy5892 297 PCTFGAITNFGHLYMWGK 314 (340)
Q Consensus 297 ~~~~~~lt~~g~vy~wG~ 314 (340)
..|+++...++++|.+|-
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 368888887899999974
No 67
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=39.50 E-value=4.5e+02 Score=27.37 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=31.8
Q ss_pred cCCeeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEE-EEEeCCCCEEEEeCCC
Q psy5892 133 GQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCV-LAVSDKGDVFGWGNSE 206 (340)
Q Consensus 133 g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~-~~l~~~g~v~~wG~n~ 206 (340)
.-.|.+++...-++|..|-.-.-.- . .. .+.+..++--..|.+-. ++.-++|++|--|.+.
T Consensus 141 ~i~hlL~vAT~~e~~ilgvs~d~~T------~---El----s~fnTgl~vsvqGinV~civs~e~GrIFf~g~~d 202 (1263)
T COG5308 141 RISHLLFVATEKEVMILGVSKDTKT------G---EL----SLFNTGLVVSVQGINVRCIVSEEDGRIFFGGEND 202 (1263)
T ss_pred hhhhhhhhhhhheeeEEEEEecccc------c---ee----EEEecceEEeccCceeEEEEeccCCcEEEecCCC
Confidence 3468888888888888873221110 0 00 01111222222344433 4444569999888776
No 68
>KOG0291|consensus
Probab=38.13 E-value=4.4e+02 Score=26.69 Aligned_cols=109 Identities=16% Similarity=0.234 Sum_probs=55.7
Q ss_pred EEEEeCCCCEEEEeCCCCCCCCC-C-CccccCceEeecccCcccEEEEEecCceEEEE--cCCCcEEEEcCCCCCCCCCC
Q psy5892 190 VLAVSDKGDVFGWGNSEYGQISE-S-EMQISTPRVLSQCKGVSRIVDVASGGSACTML--NDEGLVYSWGYGLLGQGPKV 265 (340)
Q Consensus 190 ~~~l~~~g~v~~wG~n~~gqlg~-~-~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l--t~~g~v~~~G~g~~g~~~~~ 265 (340)
++++...|.-.++|...-|||.. + ......-++--. ..++..++-..+-.++. .+||+|=+|-.
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH---~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~--------- 379 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH---SDRITSLAYSPDGQLIATGAEDGKVKVWNT--------- 379 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeecccc---ccceeeEEECCCCcEEEeccCCCcEEEEec---------
Confidence 45556678888888888888776 1 110111111101 34677777776644444 57888888841
Q ss_pred ccccCceeecccccCCcccCCCCCeEEEEccCCceEEEecCCcEEEEeCCCC
Q psy5892 266 SRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQY 317 (340)
Q Consensus 266 ~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~ 317 (340)
.+....+... . .......++++.-++-.+-.+-||.|-+|-.++|
T Consensus 380 --~SgfC~vTFt--e---Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 380 --QSGFCFVTFT--E---HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred --cCceEEEEec--c---CCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 1111111100 0 0011234445554555555666777777776654
No 69
>KOG1230|consensus
Probab=37.99 E-value=2.6e+02 Score=26.09 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=15.1
Q ss_pred CceEEEEcCCCcEEEEc
Q psy5892 239 GSACTMLNDEGLVYSWG 255 (340)
Q Consensus 239 ~~~~~~lt~~g~v~~~G 255 (340)
..|+++++.+|.+++||
T Consensus 233 SGcq~~vtpqg~i~vyG 249 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYG 249 (521)
T ss_pred CcceEEecCCCcEEEEc
Confidence 45888999999999999
No 70
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=37.18 E-value=22 Score=24.21 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=9.0
Q ss_pred E-EEeecCCCCC
Q psy5892 27 L-FGCGLNSDSQ 37 (340)
Q Consensus 27 l-~~~G~n~~gq 37 (340)
+ |+||+|++-+
T Consensus 58 v~waWGSNKnk~ 69 (84)
T PF07312_consen 58 VYWAWGSNKNKQ 69 (84)
T ss_pred eeeeeccCCCCC
Confidence 6 9999997654
No 71
>PRK05560 DNA gyrase subunit A; Validated
Probab=37.17 E-value=4.9e+02 Score=26.91 Aligned_cols=227 Identities=12% Similarity=0.097 Sum_probs=107.6
Q ss_pred CCeEEE--EeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccC-----CeeEEE
Q psy5892 68 TQIKHL--ATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQ-----DHTLFL 140 (340)
Q Consensus 68 ~~i~~i--~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~-----~~~~~l 140 (340)
..+..+ +......+++|+.|++|..-....-..+.. ... ......+.-..+++|+.+.+-. ...+++
T Consensus 537 D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~---~~G---~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlv 610 (805)
T PRK05560 537 DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRT---ARG---RPIVNLLPLEPGEKITAILPVREFDDDKYLFFA 610 (805)
T ss_pred CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcC---CCC---eEHHHhcCCCCCceEEEEEeccCCCCCCEEEEE
Confidence 344443 344455788899999999876533221110 000 0011112222357777777644 357788
Q ss_pred EcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCCCCcccc
Q psy5892 141 TESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISESEMQIS 218 (340)
Q Consensus 141 t~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~ 218 (340)
|++|.+.---...+-....+ -.....+. .+..++.+..+ ..+.+++|++|++|.+-...--..+.....
T Consensus 611 Tk~GyiKRi~l~~~~~~~r~----G~~~ikLk---e~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~G-- 681 (805)
T PRK05560 611 TKNGTVKKTSLSEFSNIRSN----GIIAINLD---EGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARG-- 681 (805)
T ss_pred eCCCEEEEEEhHHhhhcccC----CceeeccC---CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCC--
Confidence 99997664432222110000 00011111 22344444443 346899999999999866544333332111
Q ss_pred CceEeecccCcccEEEEEecC---ceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEE--
Q psy5892 219 TPRVLSQCKGVSRIVDVASGG---SACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESL-- 293 (340)
Q Consensus 219 ~p~~i~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i-- 293 (340)
..+..+...+.|..+.+-. .+.+++|++|.+--.--..+-..... ...-..++ +. ..+..++.+
T Consensus 682 --v~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~--~kG~~~lk---l~----~~~d~lv~v~~ 750 (805)
T PRK05560 682 --VRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRG--GKGVITIK---IT----EKNGKLVGALP 750 (805)
T ss_pred --cccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCC--CCcEEeee---cc----CCCCeEEEEEE
Confidence 1111224456676665532 25677788876654421101000000 00000110 00 011233332
Q ss_pred EccCCceEEEecCCcEEEEeCCCCCcc
Q psy5892 294 IAGPCTFGAITNFGHLYMWGKNQYGQL 320 (340)
Q Consensus 294 ~~G~~~~~~lt~~g~vy~wG~n~~GqL 320 (340)
..+....+++|.+|++.-+-.++--.+
T Consensus 751 v~~~~~v~i~T~~G~~lrf~~~eI~~~ 777 (805)
T PRK05560 751 VDDDDEIMLITDSGKLIRTRVSEISIT 777 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEHHHCCcc
Confidence 234556888999999887766543333
No 72
>PHA02790 Kelch-like protein; Provisional
Probab=36.87 E-value=1.9e+02 Score=27.64 Aligned_cols=12 Identities=17% Similarity=0.041 Sum_probs=9.4
Q ss_pred EEcCCCcEEEEc
Q psy5892 244 MLNDEGLVYSWG 255 (340)
Q Consensus 244 ~lt~~g~v~~~G 255 (340)
+..-+|+||+.|
T Consensus 403 ~~~~~~~IYv~G 414 (480)
T PHA02790 403 ALVFGRRLFLVG 414 (480)
T ss_pred EEEECCEEEEEC
Confidence 335589999998
No 73
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=36.23 E-value=1.9e+02 Score=21.80 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=34.8
Q ss_pred EEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEE
Q psy5892 72 HLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYS 148 (340)
Q Consensus 72 ~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~ 148 (340)
++.|-..+.+.+..||.|-+-..... ....-.+.......|.--.+-...-+|+++.|+||+
T Consensus 2 qLy~~~~~~L~I~~dG~V~Gt~~~~~---------------~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~~G~ly~ 63 (123)
T cd00058 2 QLYCRTGFHLQILPDGTVDGTRDDSS---------------SYTILERIAVAVGVVSIKGVASCRYLCMNKCGKLYG 63 (123)
T ss_pred eEEEcCCeEEEEcCCCcEecccCCCC---------------CCceEEEEECCCCEEEEEEcccceEEEECCCCCEEE
Confidence 45566577888888998876543210 111111222212333322344556789999999996
No 74
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=35.85 E-value=1.7e+02 Score=26.92 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=45.6
Q ss_pred CceEEEEccCCe---eEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEE
Q psy5892 125 EKIMDAVCGQDH---TLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFG 201 (340)
Q Consensus 125 ~~i~~i~~g~~~---~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~ 201 (340)
..+..+.+++++ .+++..+|++..|-. ...+.++ .....+.+|..-.-..+|++..|+||+
T Consensus 160 ~~~~~~~~~~~~~~~vl~i~~~g~l~~w~~--------------~~Wt~l~--~~~~~~~DIi~~kGkfYAvD~~G~l~~ 223 (373)
T PLN03215 160 SALVKVKEGDNHRDGVLGIGRDGKINYWDG--------------NVLKALK--QMGYHFSDIIVHKGQTYALDSIGIVYW 223 (373)
T ss_pred EEEEEeecCCCcceEEEEEeecCcEeeecC--------------CeeeEcc--CCCceeeEEEEECCEEEEEcCCCeEEE
Confidence 344445667775 677778899988852 2233443 255679999999999999999999999
Q ss_pred Ee
Q psy5892 202 WG 203 (340)
Q Consensus 202 wG 203 (340)
+.
T Consensus 224 i~ 225 (373)
T PLN03215 224 IN 225 (373)
T ss_pred Ee
Confidence 86
No 75
>KOG0275|consensus
Probab=34.80 E-value=3.4e+02 Score=24.35 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=15.5
Q ss_pred EEccCCceEEEecCCcEEEEeC
Q psy5892 293 LIAGPCTFGAITNFGHLYMWGK 314 (340)
Q Consensus 293 i~~G~~~~~~lt~~g~vy~wG~ 314 (340)
++.-.....++.+++.+|++-.
T Consensus 445 lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEe
Confidence 3344566777888888888864
No 76
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=34.32 E-value=1.1e+02 Score=21.20 Aligned_cols=34 Identities=3% Similarity=0.072 Sum_probs=26.5
Q ss_pred CCCeEEEEeC-CCeEEEEeCCCcEEEEecCCCCCc
Q psy5892 67 STQIKHLATG-RAHTIVITDNEGAFTFGNNSFGQC 100 (340)
Q Consensus 67 ~~~i~~i~~g-~~~~~~lt~~g~l~~~G~n~~gql 100 (340)
...=..|+|. ....++|++||.||+-+--+.|.+
T Consensus 15 ~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 15 GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 5566789999 999999999999999987666654
No 77
>PLN02153 epithiospecifier protein
Probab=32.57 E-value=3.7e+02 Score=24.10 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=10.4
Q ss_pred EEEEcCCCcEEEEc
Q psy5892 242 CTMLNDEGLVYSWG 255 (340)
Q Consensus 242 ~~~lt~~g~v~~~G 255 (340)
++.+..+++||.+|
T Consensus 308 ~~~v~~~~~~~~~g 321 (341)
T PLN02153 308 TATVYGKNGLLMHG 321 (341)
T ss_pred ccccCCcceEEEEc
Confidence 45556667899998
No 78
>KOG1034|consensus
Probab=32.50 E-value=90 Score=27.95 Aligned_cols=55 Identities=7% Similarity=0.163 Sum_probs=34.3
Q ss_pred eCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCe--eEEEEcCCcEEEEEe
Q psy5892 84 TDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDH--TLFLTESGKVYSCGW 151 (340)
Q Consensus 84 t~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~--~~~lt~~g~vy~wG~ 151 (340)
.+.|++|.|-.... .++..+.......+..|++.+-..+- .+++++++.||.|-.
T Consensus 326 nq~g~v~vwdL~~~-------------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNN-------------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCCCcEEEEECCCC-------------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 46788999865321 11122223334446788888866654 446688999999864
No 79
>KOG1240|consensus
Probab=31.84 E-value=7e+02 Score=27.08 Aligned_cols=163 Identities=13% Similarity=0.218 Sum_probs=82.4
Q ss_pred CCCeEEEEeCCCe-EEEEe--CCCcEEEEecCCCCCccC-CCCCCccccCCceeccccccCCCceEEEE-ccCCeeEEE-
Q psy5892 67 STQIKHLATGRAH-TIVIT--DNEGAFTFGNNSFGQCGR-GIVQEEDYQGKWFCHNIADLEGEKIMDAV-CGQDHTLFL- 140 (340)
Q Consensus 67 ~~~i~~i~~g~~~-~~~lt--~~g~l~~~G~n~~gqlg~-~~~~~~~~~~~~~~~~~~~~~~~~i~~i~-~g~~~~~~l- 140 (340)
...+.+++....| +++++ +||.|=.|-..+. .|. +....+ .+. .+.+.++.++. |++.+.+|+
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~--~~~~~s~rS~-----lty----s~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL--EGEGGSARSE-----LTY----SPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhh--hcCcceeeee-----EEE----eccCCceEEEEeccCCCeEEEE
Confidence 3356688888888 88876 7899999976432 121 111110 111 11245566554 444444443
Q ss_pred EcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec-----CcEEEEEeCCCCEEEEeCCCCCCCCCCCc
Q psy5892 141 TESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA-----VDCVLAVSDKGDVFGWGNSEYGQISESEM 215 (340)
Q Consensus 141 t~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g-----~~~~~~l~~~g~v~~wG~n~~gqlg~~~~ 215 (340)
++||.|-+.+-+.+.+ ......-.+++.....-.+++.-+- ..-.++.|+.+.+..|+....--+-
T Consensus 1117 t~DG~v~~~~id~~~~-----~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w---- 1187 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNV-----SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW---- 1187 (1431)
T ss_pred cCCCeEEEEEcccccc-----ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH----
Confidence 7889999887555421 0011111122211122234444332 2234668888999999865321111
Q ss_pred cccCceEeecccCcccEEEEEecCce--EEEEcCCCcEEEEc
Q psy5892 216 QISTPRVLSQCKGVSRIVDVASGGSA--CTMLNDEGLVYSWG 255 (340)
Q Consensus 216 ~~~~p~~i~~~~~~~~i~~i~~g~~~--~~~lt~~g~v~~~G 255 (340)
.++..+...-|.+++..... .++=|..|.+-+|-
T Consensus 1188 ------~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWD 1223 (1431)
T KOG1240|consen 1188 ------RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWD 1223 (1431)
T ss_pred ------hhhcCccccceeEEEecCCceEEEEecCCceEEEEE
Confidence 11111222346666654433 33337788888885
No 80
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=31.28 E-value=2.2e+02 Score=26.24 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=44.1
Q ss_pred CeEEEEeCCCe---EEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCc
Q psy5892 69 QIKHLATGRAH---TIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGK 145 (340)
Q Consensus 69 ~i~~i~~g~~~---~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~ 145 (340)
.+..+.++.++ .+++..+|++..|-.+.. ... + .....+.+|.--....+|++..|.
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~W----------------t~l---~-~~~~~~~DIi~~kGkfYAvD~~G~ 220 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVL----------------KAL---K-QMGYHFSDIIVHKGQTYALDSIGI 220 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCee----------------eEc---c-CCCceeeEEEEECCEEEEEcCCCe
Confidence 34445777775 677778899988853322 111 1 125779999999999999998999
Q ss_pred EEEEE
Q psy5892 146 VYSCG 150 (340)
Q Consensus 146 vy~wG 150 (340)
||++.
T Consensus 221 l~~i~ 225 (373)
T PLN03215 221 VYWIN 225 (373)
T ss_pred EEEEe
Confidence 99877
No 81
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=30.35 E-value=6e+02 Score=25.87 Aligned_cols=119 Identities=12% Similarity=0.061 Sum_probs=56.8
Q ss_pred eEEEEcCCcEEEEEeCCCCCCCC-------CCC--CCeeeceeecccccCccEEEEEecCcE-EEEEeCCCCEEE-----
Q psy5892 137 TLFLTESGKVYSCGWGADGQTGL-------GHL--NNQETPCLVRGEIEGERIVKLSSAVDC-VLAVSDKGDVFG----- 201 (340)
Q Consensus 137 ~~~lt~~g~vy~wG~n~~gqlg~-------~~~--~~~~~p~~~~~~~~~~~i~~i~~g~~~-~~~l~~~g~v~~----- 201 (340)
.++...++.+|+|-.+...-+-. ... ......+.++.......|..|...... .+||.-...|.+
T Consensus 35 NLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~ 114 (717)
T PF10168_consen 35 NLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELPR 114 (717)
T ss_pred eeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEecc
Confidence 34444478999998665432211 000 011223333333344567777765443 344444444443
Q ss_pred -EeCCCCCCCCC-CCccccCceEeeccc--CcccEEEEE-----ecCceEEEEcCCCcEEEEc
Q psy5892 202 -WGNSEYGQISE-SEMQISTPRVLSQCK--GVSRIVDVA-----SGGSACTMLNDEGLVYSWG 255 (340)
Q Consensus 202 -wG~n~~gqlg~-~~~~~~~p~~i~~~~--~~~~i~~i~-----~g~~~~~~lt~~g~v~~~G 255 (340)
||.+.+-+.|. .......|.--.++. ....|+++. ....|.++||.|+.+-.+-
T Consensus 115 r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 115 RWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD 177 (717)
T ss_pred ccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence 55554333333 111122221111111 123455554 2367999999999765553
No 82
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=30.34 E-value=6e+02 Score=25.87 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=20.4
Q ss_pred CCceEEEE-----ccCCeeEEEEcCCcEEEEE
Q psy5892 124 GEKIMDAV-----CGQDHTLFLTESGKVYSCG 150 (340)
Q Consensus 124 ~~~i~~i~-----~g~~~~~~lt~~g~vy~wG 150 (340)
...|+++. ..+.|.++||+|+.+..+-
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD 177 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence 35677775 4578999999999877655
No 83
>PRK02529 petN cytochrome b6-f complex subunit PetN; Provisional
Probab=29.35 E-value=50 Score=18.23 Aligned_cols=14 Identities=29% Similarity=0.850 Sum_probs=10.9
Q ss_pred cEEEEeCCCCCccc
Q psy5892 308 HLYMWGKNQYGQLG 321 (340)
Q Consensus 308 ~vy~wG~n~~GqLG 321 (340)
.+.+||+|..|.+.
T Consensus 19 slVVWGRnG~g~~~ 32 (33)
T PRK02529 19 AMVVWGRNGDGSID 32 (33)
T ss_pred EEEEEecCCccccC
Confidence 46789999888664
No 84
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=28.79 E-value=4.1e+02 Score=23.48 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=33.3
Q ss_pred eCCCeEEEEeCCCcEEEEecCC-CCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEE
Q psy5892 75 TGRAHTIVITDNEGAFTFGNNS-FGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSC 149 (340)
Q Consensus 75 ~g~~~~~~lt~~g~l~~~G~n~-~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~w 149 (340)
-+.-.+.+++.+|+||.-|.+. +|.|-.. .. .++.++.. --+.-.-++.|.+|+||.-
T Consensus 147 ~~nlet~vfD~~G~lWFt~q~G~yGrLdPa---~~------~i~vfpaP--------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 147 DANLETAVFDPWGNLWFTGQIGAYGRLDPA---RN------VISVFPAP--------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred CCcccceeeCCCccEEEeeccccceecCcc---cC------ceeeeccC--------CCCCCcceEECCCCcEEEE
Confidence 3455678899999999999753 3332111 00 01111100 1233357889999999975
No 85
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=28.37 E-value=4.7e+02 Score=23.99 Aligned_cols=120 Identities=13% Similarity=0.200 Sum_probs=59.0
Q ss_pred CCCeEEEEeCCC-eE-EEEeCCCc-EEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCC-eeEEEEc
Q psy5892 67 STQIKHLATGRA-HT-IVITDNEG-AFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQD-HTLFLTE 142 (340)
Q Consensus 67 ~~~i~~i~~g~~-~~-~~lt~~g~-l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~-~~~~lt~ 142 (340)
...+..|..|.. |. ++.+.||+ +|..+. .|.+ ..+.......+..|..|.. +.++++.
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~v----------------sviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTV----------------SVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEE----------------EEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeE----------------EEEECCcccEEEEEecCCCcceEEEcC
Confidence 345667776654 54 45677786 777643 3322 1122222356778877766 5788899
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCeeeceeecc-----cccCccEEEEEe---cCcEEEEEeCCCCEEEEeC
Q psy5892 143 SGKVYSCGWGADGQTGLGHLNNQETPCLVRG-----EIEGERIVKLSS---AVDCVLAVSDKGDVFGWGN 204 (340)
Q Consensus 143 ~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~-----~~~~~~i~~i~~---g~~~~~~l~~~g~v~~wG~ 204 (340)
||+...-++...+++..-+......-..++. .....++..|.+ ...+.+.+.+.+++|..-.
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 9986655655555554433222111111111 112335555544 2336677888899998753
No 86
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=28.28 E-value=7.4e+02 Score=26.26 Aligned_cols=132 Identities=14% Similarity=0.051 Sum_probs=67.0
Q ss_pred eeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecC-CCCCCCCCCeEEEEeCCC----
Q psy5892 4 ITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIP-LPVKHPSTQIKHLATGRA---- 78 (340)
Q Consensus 4 i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~-~~~~~~~~~i~~i~~g~~---- 78 (340)
+..+.....|.-+++-|+.|+ +|.-=... |--+.-... ...+. ..+. +.. ++++|+.+.+-.+
T Consensus 554 i~~~~~~~T~d~LL~FTn~Gk--vy~ikvy~---IPe~~~~~~---G~~I~--nll~~~~~--~~EkIv~i~~~~ef~~~ 621 (957)
T PRK13979 554 NKFLIQSNTKDTLLIFTDKGN--MYQIKGIN---IPEFKWKEK---GERLD--EIIKGIDL--ESEKIIEAYSIEDFTPQ 621 (957)
T ss_pred eEEEEEEcCCCEEEEEECCCe--EEEEEeee---CCCCCcCCC---CeEHH--HhhhccCC--CCCeEEEEEEeccCCCC
Confidence 455556666665555589999 77653221 111110000 00000 1111 110 1667887777643
Q ss_pred -eEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccC-----CeeEEEEcCCcEEEEEeC
Q psy5892 79 -HTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQ-----DHTLFLTESGKVYSCGWG 152 (340)
Q Consensus 79 -~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~-----~~~~~lt~~g~vy~wG~n 152 (340)
+.+++|.+|.+--.-...+-. .. . ....-.+. ++..++.+.... .+.+++|++|...-+-.+
T Consensus 622 ~~lv~~Tk~G~VKrt~L~ef~~--------~r-~-~~~aikL~--e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~ 689 (957)
T PRK13979 622 KDFIFITDSGGIKKTSLDKFVT--------NY-T-KLMALKLK--KGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEP 689 (957)
T ss_pred CEEEEEECCCeEEEEehhhccc--------cc-c-ceEEEEcC--CCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHH
Confidence 368889999887765433210 00 0 01111111 245565554322 358899999988888766
Q ss_pred CCCCCCC
Q psy5892 153 ADGQTGL 159 (340)
Q Consensus 153 ~~gqlg~ 159 (340)
.-..+|.
T Consensus 690 eVr~mGR 696 (957)
T PRK13979 690 ELEPVDR 696 (957)
T ss_pred HCcccCC
Confidence 6555554
No 87
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=27.79 E-value=79 Score=18.00 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=15.3
Q ss_pred EEccCCceEEEecCCcEEEEeC
Q psy5892 293 LIAGPCTFGAITNFGHLYMWGK 314 (340)
Q Consensus 293 i~~G~~~~~~lt~~g~vy~wG~ 314 (340)
++..+.+.++.+.+|+||+.-.
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEET
T ss_pred CEEECCEEEEEcCCCEEEEEeC
Confidence 3556678888888999998743
No 88
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=27.68 E-value=3.7e+02 Score=22.57 Aligned_cols=16 Identities=6% Similarity=0.175 Sum_probs=12.1
Q ss_pred ceEEEEcCCCcEEEEc
Q psy5892 240 SACTMLNDEGLVYSWG 255 (340)
Q Consensus 240 ~~~~~lt~~g~v~~~G 255 (340)
--.++++.+|+||+..
T Consensus 186 pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVAD 201 (246)
T ss_dssp EEEEEEBTTS-EEEEE
T ss_pred CCcceEcCCCCEEEEE
Confidence 4578899999999874
No 89
>KOG2444|consensus
Probab=27.38 E-value=3.9e+02 Score=22.75 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=36.8
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCC--eeEEEEcCCcEEEEE
Q psy5892 76 GRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQD--HTLFLTESGKVYSCG 150 (340)
Q Consensus 76 g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~--~~~~lt~~g~vy~wG 150 (340)
+..-.++.+.+|.||.|=.|.+|++- ..+....+....-|..++. -.++-..+|.++.|-
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~---------------d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n 130 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHS---------------DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACN 130 (238)
T ss_pred cCceEEeecccceEEEecCCccchHH---------------HhhhcccccceeccccccccceeEEeccCCceeeec
Confidence 34445667899999999999887742 1222222233444555666 444555678888775
No 90
>KOG1900|consensus
Probab=27.27 E-value=8.4e+02 Score=26.58 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=24.2
Q ss_pred cCccEEEEEecCcEEE--EEeCCCCEEEEeCCCCCC
Q psy5892 176 EGERIVKLSSAVDCVL--AVSDKGDVFGWGNSEYGQ 209 (340)
Q Consensus 176 ~~~~i~~i~~g~~~~~--~l~~~g~v~~wG~n~~gq 209 (340)
..++|.+|+......+ ++++.|.|=+|-....|+
T Consensus 241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~ 276 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGL 276 (1311)
T ss_pred CCCcceeeEeccccceeeeeccCceEEEEEccCCCc
Confidence 3568999999887765 466778877775555444
No 91
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=26.97 E-value=3.5e+02 Score=22.10 Aligned_cols=144 Identities=9% Similarity=0.074 Sum_probs=65.9
Q ss_pred CeEEEEeCCC-eEEEEeC-CCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccC-CeeEEEEc-CC
Q psy5892 69 QIKHLATGRA-HTIVITD-NEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQ-DHTLFLTE-SG 144 (340)
Q Consensus 69 ~i~~i~~g~~-~~~~lt~-~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~-~~~~~lt~-~g 144 (340)
.|..+..... ..++... +|.++.|-.....+ ...+... ...|..+.-.. ...++... +|
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC----------------LTTLRGH-TDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE----------------EEEeccC-CCcEEEEEEcCcCCEEEEEcCCC
Confidence 5666655554 2333333 78888886542110 1111111 23455554443 23333333 88
Q ss_pred cEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCc--EEEEEeCCCCEEEEeCCCCCCCCCCCccccCceE
Q psy5892 145 KVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVD--CVLAVSDKGDVFGWGNSEYGQISESEMQISTPRV 222 (340)
Q Consensus 145 ~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~--~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~ 222 (340)
.|+.|-......+ ..+. .....|..+....+ ..++...+|.+..|-..... .
T Consensus 158 ~i~i~d~~~~~~~-----------~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-------------~ 211 (289)
T cd00200 158 TIKLWDLRTGKCV-----------ATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK-------------C 211 (289)
T ss_pred cEEEEEccccccc-----------eeEe--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCc-------------e
Confidence 8888864321100 0000 11123555544433 45555568888888654311 1
Q ss_pred eecc-cCcccEEEEEecCc--eEEEEcCCCcEEEEc
Q psy5892 223 LSQC-KGVSRIVDVASGGS--ACTMLNDEGLVYSWG 255 (340)
Q Consensus 223 i~~~-~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G 255 (340)
+... .....+..+....+ ..+....+|.++.|-
T Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~ 247 (289)
T cd00200 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD 247 (289)
T ss_pred ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence 1110 11224555555442 223333488898884
No 92
>KOG2055|consensus
Probab=26.60 E-value=5.6e+02 Score=24.29 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=13.0
Q ss_pred CcEEEEEeCCCCEEEEeCC
Q psy5892 187 VDCVLAVSDKGDVFGWGNS 205 (340)
Q Consensus 187 ~~~~~~l~~~g~v~~wG~n 205 (340)
.-.++++.-+|..++.|..
T Consensus 389 ~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSD 407 (514)
T ss_pred ceeeeeecCCCceEEeccC
Confidence 4456667777777777764
No 93
>KOG0307|consensus
Probab=25.52 E-value=1.6e+02 Score=30.73 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=22.5
Q ss_pred CCeEEEE-ccCCceEEEe--cCCcEEEEeCCCCCccc
Q psy5892 288 SKVESLI-AGPCTFGAIT--NFGHLYMWGKNQYGQLG 321 (340)
Q Consensus 288 ~~i~~i~-~G~~~~~~lt--~~g~vy~wG~n~~GqLG 321 (340)
..|.+++ |..+-.++|+ +|+++++|+-|+.-+||
T Consensus 254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred cceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 4566665 4555344443 78999999999855554
No 94
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=25.26 E-value=55 Score=23.77 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=20.6
Q ss_pred EeCCCeEEEEeCCCcEEEEecCCCCC
Q psy5892 74 ATGRAHTIVITDNEGAFTFGNNSFGQ 99 (340)
Q Consensus 74 ~~g~~~~~~lt~~g~l~~~G~n~~gq 99 (340)
..-..++-+|-.+|+|.+||...+.|
T Consensus 76 TTkDECTplvF~n~~LvgWG~~ay~~ 101 (102)
T PF11399_consen 76 TTKDECTPLVFKNGKLVGWGDDAYSQ 101 (102)
T ss_pred ccCCceEEEEEECCEEEEEcHHhhhc
Confidence 34567888899999999999876643
No 95
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=24.00 E-value=4e+02 Score=21.74 Aligned_cols=135 Identities=9% Similarity=0.046 Sum_probs=62.7
Q ss_pred eEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCC-eeEEEEc-CCcEEEEEeCCCCC
Q psy5892 79 HTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQD-HTLFLTE-SGKVYSCGWGADGQ 156 (340)
Q Consensus 79 ~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~-~~~~lt~-~g~vy~wG~n~~gq 156 (340)
..++...+|.++.|-..... ....+... ...|..+..... ..++... +|.|+.|-......
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~----------------~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 127 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGE----------------CVRTLTGH-TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127 (289)
T ss_pred EEEEEcCCCeEEEEEcCccc----------------ceEEEecc-CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE
Confidence 45555568888888654310 11111111 234555554433 3444444 78888887442111
Q ss_pred CCCCCCCCeeeceeecccccCccEEEEEecC-cEEEEEe-CCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEE
Q psy5892 157 TGLGHLNNQETPCLVRGEIEGERIVKLSSAV-DCVLAVS-DKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVD 234 (340)
Q Consensus 157 lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~-~~~~~l~-~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~ 234 (340)
. ..+. .....|..+.... ...++.. .+|.|+.|-...... ...+. .....|..
T Consensus 128 ~-----------~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~----------~~~~~--~~~~~i~~ 182 (289)
T cd00200 128 L-----------TTLR--GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC----------VATLT--GHTGEVNS 182 (289)
T ss_pred E-----------EEec--cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc----------ceeEe--cCccccce
Confidence 0 0111 1112355555544 2233333 488898886542110 00111 11224555
Q ss_pred EEecCc--eEEEEcCCCcEEEEc
Q psy5892 235 VASGGS--ACTMLNDEGLVYSWG 255 (340)
Q Consensus 235 i~~g~~--~~~~lt~~g~v~~~G 255 (340)
+....+ ..++...+|.|..|-
T Consensus 183 ~~~~~~~~~l~~~~~~~~i~i~d 205 (289)
T cd00200 183 VAFSPDGEKLLSSSSDGTIKLWD 205 (289)
T ss_pred EEECCCcCEEEEecCCCcEEEEE
Confidence 555443 455555688888884
No 96
>KOG4441|consensus
Probab=23.87 E-value=3.6e+02 Score=26.50 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=11.4
Q ss_pred EEecCCcEEEEeCCC
Q psy5892 302 AITNFGHLYMWGKNQ 316 (340)
Q Consensus 302 ~lt~~g~vy~wG~n~ 316 (340)
+.+-+++||+.|-.+
T Consensus 471 ~a~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFD 485 (571)
T ss_pred EEEECCEEEEECCcc
Confidence 556678999998655
No 97
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=23.73 E-value=8.3e+02 Score=25.28 Aligned_cols=170 Identities=13% Similarity=0.122 Sum_probs=84.0
Q ss_pred CCeEEE--EeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc-----CCeeEEE
Q psy5892 68 TQIKHL--ATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG-----QDHTLFL 140 (340)
Q Consensus 68 ~~i~~i--~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g-----~~~~~~l 140 (340)
..++.+ +...++.+++|+.|++|..-....-..+.. ... ......+.-..+++|+.+.+- ....+++
T Consensus 535 D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~---~~G---~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvli 608 (800)
T TIGR01063 535 DFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRT---AKG---KPIVNLLPLQPDERITAILSVKEFDDGLYLFFA 608 (800)
T ss_pred CeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcC---CCC---cCHHHhccCCCCCeEEEEEEeccCCCCCEEEEE
Confidence 344443 344455788899999999844322111110 000 001111222235677776652 2356788
Q ss_pred EcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCCCCcccc
Q psy5892 141 TESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISESEMQIS 218 (340)
Q Consensus 141 t~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~ 218 (340)
|++|.+.-.-.+.+..... .-..-..+. .+..++.+... ..+.+++|++|+++.+-...--..+.......
T Consensus 609 T~~GyiKRi~l~~~~~~~r----~G~~aiklk---e~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~ 681 (800)
T TIGR01063 609 TKNGVVKKTSLTEFSNIRS----NGIIAIKLD---DGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR 681 (800)
T ss_pred eCCCEEEEEEhHHhhhhcc----CCcccccCC---CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee
Confidence 9899776544322211000 000000111 12234444333 34689999999999997665444444222111
Q ss_pred CceEeecccCcccEEEEEec--CceEEEEcCCCcEEEE
Q psy5892 219 TPRVLSQCKGVSRIVDVASG--GSACTMLNDEGLVYSW 254 (340)
Q Consensus 219 ~p~~i~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~ 254 (340)
.+. +...+.|+.+..- ..+.+++|++|.+.-.
T Consensus 682 ---~i~-L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~ 715 (800)
T TIGR01063 682 ---GIK-LKNEDFVVSLLVVSEESYLLIVTENGYGKRT 715 (800)
T ss_pred ---ccc-CCCCCEEEEEEEeccccEEEEEecCCcEEEE
Confidence 122 2345667666542 2356777888766544
No 98
>PLN02772 guanylate kinase
Probab=23.41 E-value=5e+02 Score=24.18 Aligned_cols=20 Identities=5% Similarity=0.023 Sum_probs=16.1
Q ss_pred cCceEEEEcCCCcEEEEcCC
Q psy5892 238 GGSACTMLNDEGLVYSWGYG 257 (340)
Q Consensus 238 g~~~~~~lt~~g~v~~~G~g 257 (340)
...|++++..+.++++.+.|
T Consensus 76 r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 76 CKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred CCcceEEEECCceEEEEeCC
Confidence 34689999999999999743
No 99
>KOG0278|consensus
Probab=23.30 E-value=5e+02 Score=22.57 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=17.7
Q ss_pred EEE-EEecCcEEEEE-eCCCCEEEEeCC
Q psy5892 180 IVK-LSSAVDCVLAV-SDKGDVFGWGNS 205 (340)
Q Consensus 180 i~~-i~~g~~~~~~l-~~~g~v~~wG~n 205 (340)
|+. +-|-.+++++- ++++.|-.|-..
T Consensus 146 Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 146 IRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred ceeEEEeccCceEEeeccCCceEEEEec
Confidence 444 44666777665 788999999643
No 100
>KOG1274|consensus
Probab=22.96 E-value=8.7e+02 Score=25.24 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=39.5
Q ss_pred EccCCeeEEEEcCCc-EEEEEeCCCCCCCCCC-CCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEE
Q psy5892 131 VCGQDHTLFLTESGK-VYSCGWGADGQTGLGH-LNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGW 202 (340)
Q Consensus 131 ~~g~~~~~~lt~~g~-vy~wG~n~~gqlg~~~-~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~w 202 (340)
..+....++++.+|+ |+++|.+ +-...-+ ......|..+.. ..+.|..|++-.+|.++-++++.|-..
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsd--g~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~~s~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSD--GDIRKWKTNSDEEEPETIDI--SGELVSSIACYSNHFLTGSEQNTVLRY 81 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCC--CceEEeecCCcccCCchhhc--cCceeEEEeecccceEEeeccceEEEe
Confidence 334455667777765 4455533 2211111 112244555432 566899999999999999998875443
No 101
>KOG2106|consensus
Probab=22.84 E-value=6.9e+02 Score=24.07 Aligned_cols=236 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred EeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEEEE-eC
Q psy5892 7 IACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVI-TD 85 (340)
Q Consensus 7 v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~~l-t~ 85 (340)
|.||+.|.+|. +..|. ...+...+..+.....|..+..+.+--++- +.
T Consensus 217 it~Gk~H~~Fw--~~~~~-----------------------------~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS 265 (626)
T KOG2106|consen 217 ITCGKGHLYFW--TLRGG-----------------------------SLVKRQGIFEKREKKFVLCVTFLENGDVITGDS 265 (626)
T ss_pred EEeCCceEEEE--EccCC-----------------------------ceEEEeeccccccceEEEEEEEcCCCCEEeecC
Q ss_pred CCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCCCCCe
Q psy5892 86 NEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQ 165 (340)
Q Consensus 86 ~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~ 165 (340)
+|.++.|+.... ++. ..+. +.-|.-+++++-.+|+|.+ |--++--.-=.+.-..
T Consensus 266 ~G~i~Iw~~~~~--------------------~~~----k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k 319 (626)
T KOG2106|consen 266 GGNILIWSKGTN--------------------RIS----KQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRK 319 (626)
T ss_pred CceEEEEeCCCc--------------------eEE----eEee-ecCCceEEEEEecCccEee-cCccceEEeccccccc
Q ss_pred eeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeC----------------------------CCCCCCCC-CCcc
Q psy5892 166 ETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGN----------------------------SEYGQISE-SEMQ 216 (340)
Q Consensus 166 ~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~----------------------------n~~gqlg~-~~~~ 216 (340)
..+++++..... |..|+-|..- +.+-...+....|. -..+|.+. .--.
T Consensus 320 ~r~~elPe~~G~--iRtv~e~~~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 320 LRETELPEQFGP--IRTVAEGKGD-ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred cccccCchhcCC--eeEEecCCCc-EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Q ss_pred ccCceEeecccCcccEEEEEecCceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEcc
Q psy5892 217 ISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAG 296 (340)
Q Consensus 217 ~~~p~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G 296 (340)
...|.--....+...-.++.-.. +.++=+..|..++. ..++.......... ....+++.+.-
T Consensus 397 ~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~--------d~e~~~lv~~~~d~---------~~ls~v~ysp~ 458 (626)
T KOG2106|consen 397 DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVL--------DTETQDLVTIHTDN---------EQLSVVRYSPD 458 (626)
T ss_pred CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEE--------ecccceeEEEEecC---------CceEEEEEcCC
Q ss_pred CCceEEEecCCcEEEEeCCCCCcc
Q psy5892 297 PCTFGAITNFGHLYMWGKNQYGQL 320 (340)
Q Consensus 297 ~~~~~~lt~~g~vy~wG~n~~GqL 320 (340)
....++=+.|+.+|.+.-...|.+
T Consensus 459 G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 459 GAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred CCEEEEecCCCeEEEEEECCCCcE
No 102
>KOG0275|consensus
Probab=22.77 E-value=5.6e+02 Score=23.01 Aligned_cols=19 Identities=16% Similarity=0.515 Sum_probs=15.1
Q ss_pred ecCceEEEEcCCCcEEEEc
Q psy5892 237 SGGSACTMLNDEGLVYSWG 255 (340)
Q Consensus 237 ~g~~~~~~lt~~g~v~~~G 255 (340)
--....+++-+|+.+|++-
T Consensus 447 pkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred CCCcEEEEEccCcEEEEEE
Confidence 3466788888999999986
No 103
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=22.74 E-value=6e+02 Score=23.27 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=14.1
Q ss_pred CCceEEEecCCcEEEEe
Q psy5892 297 PCTFGAITNFGHLYMWG 313 (340)
Q Consensus 297 ~~~~~~lt~~g~vy~wG 313 (340)
+.+.++.+++|+||++-
T Consensus 376 ~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 376 DDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCEEEEEeCCceEEEEe
Confidence 55888889999999874
No 104
>KOG1188|consensus
Probab=22.44 E-value=5.9e+02 Score=23.12 Aligned_cols=122 Identities=12% Similarity=0.179 Sum_probs=63.5
Q ss_pred eeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEEE-
Q psy5892 4 ITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIV- 82 (340)
Q Consensus 4 i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~~- 82 (340)
..++..|....+++.. ++|++++|-|+.. +.|+ .+..+... ...++-+.|-.-|.+.
T Consensus 32 q~~~~~~~e~~vav~l-Sngsv~lyd~~tg--~~l~------------------~fk~~~~~-~N~vrf~~~ds~h~v~s 89 (376)
T KOG1188|consen 32 QEQVKDGFETAVAVSL-SNGSVRLYDKGTG--QLLE------------------EFKGPPAT-TNGVRFISCDSPHGVIS 89 (376)
T ss_pred hhhhccCcceeEEEEe-cCCeEEEEeccch--hhhh------------------eecCCCCc-ccceEEecCCCCCeeEE
Confidence 3456667665566654 8889999999862 1111 11111110 2245566664455444
Q ss_pred EeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccC-CCceEEEEccCCeeEEEEcCCcEEEEEeCCCCC
Q psy5892 83 ITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLE-GEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQ 156 (340)
Q Consensus 83 lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gq 156 (340)
-+.||.|-.|--...++...-...... +.++..|. +.+=.-++||. -....+-.|+.|-.-...|
T Consensus 90 ~ssDG~Vr~wD~Rs~~e~a~~~~~~~~------~~~f~~ld~nck~~ii~~Gt---E~~~s~A~v~lwDvR~~qq 155 (376)
T KOG1188|consen 90 CSSDGTVRLWDIRSQAESARISWTQQS------GTPFICLDLNCKKNIIACGT---ELTRSDASVVLWDVRSEQQ 155 (376)
T ss_pred eccCCeEEEEEeecchhhhheeccCCC------CCcceEeeccCcCCeEEecc---ccccCceEEEEEEeccccc
Confidence 467899999988777665433222111 11222221 22334455552 2222344678888766666
No 105
>PF13854 Kelch_5: Kelch motif
Probab=21.48 E-value=94 Score=18.03 Aligned_cols=18 Identities=11% Similarity=0.401 Sum_probs=12.8
Q ss_pred CceEEEecCCcEEEEeCCC
Q psy5892 298 CTFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 298 ~~~~~lt~~g~vy~wG~n~ 316 (340)
.|++++.. +++|.+|-..
T Consensus 7 ~hs~~~~~-~~iyi~GG~~ 24 (42)
T PF13854_consen 7 GHSAVVVG-NNIYIFGGYS 24 (42)
T ss_pred ceEEEEEC-CEEEEEcCcc
Confidence 56666654 8899998644
No 106
>PLN02772 guanylate kinase
Probab=21.42 E-value=2.8e+02 Score=25.78 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=16.8
Q ss_pred ecCcEEEEEeCCCCEEEEeCC
Q psy5892 185 SAVDCVLAVSDKGDVFGWGNS 205 (340)
Q Consensus 185 ~g~~~~~~l~~~g~v~~wG~n 205 (340)
+..-|+.++.++.++++.+-.
T Consensus 75 ~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 75 PCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred CCCcceEEEECCceEEEEeCC
Confidence 456789999988899999743
No 107
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=21.20 E-value=92 Score=22.99 Aligned_cols=21 Identities=43% Similarity=0.718 Sum_probs=18.5
Q ss_pred cCCceEEEecCCcEEEEeCCC
Q psy5892 296 GPCTFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 296 G~~~~~~lt~~g~vy~wG~n~ 316 (340)
-..|.++.|.=|+||.|+.+.
T Consensus 78 ~~~~~ia~tAFGdl~~w~e~~ 98 (109)
T PF08887_consen 78 DNYIPIARTAFGDLYVWGENT 98 (109)
T ss_pred ceEEEEEEcccccEEEEEcCC
Confidence 357889999999999999876
Done!