Query psy5892
Match_columns 340
No_of_seqs 162 out of 1836
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 20:55:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 2.6E-62 9E-67 451.9 37.4 305 3-337 69-378 (406)
2 4d9s_A UVB-resistance protein 100.0 3.8E-62 1.3E-66 450.8 37.8 307 2-338 16-327 (406)
3 3kci_A Probable E3 ubiquitin-p 100.0 8.7E-62 3E-66 446.2 33.5 307 3-337 54-366 (389)
4 1a12_A RCC1, regulator of chro 100.0 9.2E-60 3.1E-64 436.3 35.0 305 2-336 59-385 (413)
5 3mvd_K Regulator of chromosome 100.0 4.1E-59 1.4E-63 433.4 36.0 301 1-336 74-394 (423)
6 3of7_A Regulator of chromosome 100.0 2.3E-59 7.9E-64 440.3 33.4 317 3-337 68-427 (473)
7 3kci_A Probable E3 ubiquitin-p 100.0 5.9E-58 2E-62 420.7 27.9 302 6-337 5-314 (389)
8 3mvd_K Regulator of chromosome 100.0 4.5E-57 1.5E-61 419.7 33.4 301 2-337 24-344 (423)
9 1a12_A RCC1, regulator of chro 100.0 1.8E-56 6E-61 414.3 31.7 301 6-336 12-335 (413)
10 3of7_A Regulator of chromosome 100.0 1.1E-55 3.7E-60 415.3 29.9 302 2-325 10-350 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 1.4E-49 4.8E-54 348.4 28.2 232 1-324 23-254 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 2.8E-44 9.5E-49 314.7 26.0 213 27-325 4-216 (282)
13 4gbf_A Phikz131; 7-bladed beta 96.9 0.0059 2E-07 50.4 9.6 126 3-156 240-379 (400)
14 4gbf_A Phikz131; 7-bladed beta 95.8 0.021 7.1E-07 47.2 6.7 71 125-209 309-379 (400)
15 1p22_A F-BOX/WD-repeat protein 95.7 1.1 3.9E-05 40.2 25.5 201 67-317 213-415 (435)
16 1p22_A F-BOX/WD-repeat protein 95.6 1.2 4.2E-05 40.0 30.0 191 67-314 173-363 (435)
17 2zwa_A Leucine carboxyl methyl 93.1 2.5 8.5E-05 41.0 15.4 17 298-314 657-673 (695)
18 2zwa_A Leucine carboxyl methyl 92.8 3.7 0.00013 39.7 16.2 16 240-255 657-672 (695)
19 2ovr_B FBW7, F-BOX/WD repeat p 92.7 5.3 0.00018 35.7 30.8 193 67-316 199-391 (445)
20 2ovr_B FBW7, F-BOX/WD repeat p 92.5 5.6 0.00019 35.5 28.4 189 67-316 159-348 (445)
21 3jrp_A Fusion protein of prote 86.2 15 0.00051 31.4 26.4 201 67-315 55-286 (379)
22 1k3i_A Galactose oxidase precu 84.6 28 0.00096 33.1 28.2 22 297-318 511-533 (656)
23 3uc1_A DNA gyrase subunit A; D 83.6 21 0.00072 30.9 22.3 218 6-255 46-276 (327)
24 3mkq_A Coatomer beta'-subunit; 82.6 36 0.0012 32.8 26.3 190 69-316 57-259 (814)
25 3sfz_A APAF-1, apoptotic pepti 82.3 48 0.0016 34.0 20.9 195 67-314 1044-1247(1249)
26 1gxr_A ESG1, transducin-like e 82.2 21 0.00071 29.8 26.4 194 10-255 10-211 (337)
27 3odt_A Protein DOA1; ubiquitin 82.2 20 0.00068 29.6 26.3 188 69-316 61-255 (313)
28 3k26_A Polycomb protein EED; W 81.1 24 0.00083 29.8 23.4 220 67-314 115-364 (366)
29 3jro_A Fusion protein of prote 79.7 46 0.0016 32.2 25.0 154 67-255 53-235 (753)
30 3mmy_A MRNA export factor; mRN 78.5 29 0.001 29.2 22.2 147 67-255 39-196 (368)
31 4aow_A Guanine nucleotide-bind 78.5 28 0.00097 29.1 25.2 26 288-313 307-334 (340)
32 1k3i_A Galactose oxidase precu 77.7 17 0.00059 34.6 11.1 55 189-255 246-304 (656)
33 3odt_A Protein DOA1; ubiquitin 77.1 29 0.001 28.5 27.6 187 67-316 104-296 (313)
34 3mmy_A MRNA export factor; mRN 76.3 34 0.0012 28.8 19.0 150 124-316 39-199 (368)
35 1suu_A DNA gyrase subunit A; t 75.6 37 0.0013 29.0 20.7 212 10-255 57-280 (312)
36 4aez_A CDC20, WD repeat-contai 72.3 49 0.0017 28.8 25.0 192 67-316 176-380 (401)
37 4aez_A CDC20, WD repeat-contai 71.9 50 0.0017 28.7 26.3 148 67-255 134-290 (401)
38 3no0_A DNA gyrase subunit A; D 71.8 43 0.0015 28.0 20.9 166 67-255 67-243 (276)
39 4asc_A Kelch repeat and BTB do 71.8 27 0.00093 29.4 9.9 16 239-255 140-155 (315)
40 3v7d_B Cell division control p 70.9 56 0.0019 28.9 29.5 202 67-316 162-381 (464)
41 1sq9_A Antiviral protein SKI8; 70.2 51 0.0018 28.2 24.5 163 125-316 122-322 (397)
42 1yfq_A Cell cycle arrest prote 69.9 47 0.0016 27.7 28.8 217 67-316 56-282 (342)
43 3zwl_B Eukaryotic translation 69.2 50 0.0017 27.7 23.4 160 67-255 74-246 (369)
44 3uc1_A DNA gyrase subunit A; D 68.6 57 0.0019 28.1 26.1 224 73-322 49-293 (327)
45 1xip_A Nucleoporin NUP159; bet 68.2 20 0.00068 31.9 8.3 65 232-315 90-154 (388)
46 1zi0_A DNA gyrase subunit A; b 63.3 69 0.0024 27.2 23.9 212 10-255 52-274 (307)
47 2woz_A Kelch repeat and BTB do 62.9 67 0.0023 26.9 13.9 17 79-95 49-65 (318)
48 3v7d_B Cell division control p 62.3 83 0.0028 27.7 27.5 205 67-316 203-421 (464)
49 3ii7_A Kelch-like protein 7; p 60.5 28 0.00095 29.1 7.7 16 135-151 48-63 (306)
50 3i2n_A WD repeat-containing pr 60.2 74 0.0025 26.5 26.8 199 67-315 65-290 (357)
51 1wp5_A Topoisomerase IV; broke 60.1 83 0.0028 27.0 23.0 215 9-255 48-274 (323)
52 2xn4_A Kelch-like protein 2; s 59.7 69 0.0024 26.5 10.1 17 134-151 100-116 (302)
53 3no0_A DNA gyrase subunit A; D 59.4 77 0.0026 26.4 22.5 211 67-316 23-246 (276)
54 1gxr_A ESG1, transducin-like e 58.5 76 0.0026 26.1 29.4 145 67-255 141-293 (337)
55 3jrp_A Fusion protein of prote 58.4 83 0.0028 26.4 24.5 200 67-316 11-240 (379)
56 1suu_A DNA gyrase subunit A; t 57.7 88 0.003 26.6 23.8 219 77-322 8-237 (312)
57 3l6v_A GYRA, DNA gyrase subuni 57.4 1E+02 0.0034 27.1 23.9 116 20-159 64-186 (370)
58 3mkq_A Coatomer beta'-subunit; 56.7 1.4E+02 0.0048 28.6 23.3 149 67-255 97-256 (814)
59 2woz_A Kelch repeat and BTB do 55.0 24 0.00083 29.8 6.4 16 239-255 150-165 (318)
60 3sfz_A APAF-1, apoptotic pepti 54.8 1.9E+02 0.0065 29.5 21.5 196 69-316 1005-1207(1249)
61 3gre_A Serine/threonine-protei 53.9 1.1E+02 0.0038 26.6 21.4 158 67-255 111-289 (437)
62 3no2_A Uncharacterized protein 52.2 98 0.0034 25.5 20.8 27 297-324 243-269 (276)
63 1sq9_A Antiviral protein SKI8; 50.9 1.2E+02 0.0039 25.9 23.4 120 125-255 187-319 (397)
64 1yfq_A Cell cycle arrest prote 48.0 1.2E+02 0.004 25.1 20.7 207 67-317 11-226 (342)
65 4gga_A P55CDC, cell division c 46.3 1.5E+02 0.005 25.8 23.2 193 67-315 189-394 (420)
66 4a11_B DNA excision repair pro 46.2 1.4E+02 0.0046 25.4 29.6 157 67-255 99-273 (408)
67 2aq5_A Coronin-1A; WD40 repeat 46.2 1.4E+02 0.0049 25.6 22.7 155 72-255 39-204 (402)
68 3p6j_A De novo designed beta-t 45.2 92 0.0031 23.1 11.7 108 67-202 29-139 (142)
69 3jro_A Fusion protein of prote 44.9 2.2E+02 0.0074 27.4 23.3 200 67-316 9-238 (753)
70 3i2n_A WD repeat-containing pr 44.8 1.3E+02 0.0046 24.8 26.1 146 77-255 129-288 (357)
71 2vpj_A Kelch-like protein 12; 42.4 94 0.0032 25.6 8.1 16 134-150 104-119 (301)
72 1zi0_A DNA gyrase subunit A; b 41.9 1.6E+02 0.0054 24.9 26.1 220 71-316 47-277 (307)
73 4a11_B DNA excision repair pro 39.4 1.7E+02 0.0059 24.6 24.4 218 67-316 43-276 (408)
74 1r5m_A SIR4-interacting protei 39.1 1.8E+02 0.0061 24.7 25.9 158 67-255 108-275 (425)
75 1pgu_A Actin interacting prote 38.6 2.3E+02 0.0077 25.7 24.6 226 2-312 254-515 (615)
76 3vgz_A Uncharacterized protein 38.3 1.7E+02 0.0058 24.2 25.0 13 20-33 49-61 (353)
77 3zwl_B Eukaryotic translation 37.8 1.7E+02 0.0059 24.2 24.3 68 126-205 177-248 (369)
78 3gre_A Serine/threonine-protei 35.8 2.1E+02 0.0074 24.7 22.8 111 67-205 168-291 (437)
79 1erj_A Transcriptional repress 34.9 2.2E+02 0.0074 24.4 24.9 165 67-255 165-338 (393)
80 4ery_A WD repeat-containing pr 33.8 1.9E+02 0.0066 23.5 25.4 108 69-205 109-222 (312)
81 1xip_A Nucleoporin NUP159; bet 31.7 2.7E+02 0.0091 24.5 13.6 98 127-254 90-187 (388)
82 1r5m_A SIR4-interacting protei 30.3 2.5E+02 0.0085 23.7 27.2 139 135-316 218-361 (425)
83 4g56_B MGC81050 protein; prote 30.2 2.5E+02 0.0086 23.7 27.0 150 125-315 140-300 (357)
84 1nun_A Fibroblast growth facto 26.6 2E+02 0.0067 21.4 7.7 66 67-148 13-79 (145)
85 2pm9_A Protein WEB1, protein t 26.2 3E+02 0.01 23.3 24.4 204 67-317 113-338 (416)
86 1zvu_A Topoisomerase IV subuni 26.1 4.5E+02 0.015 25.3 11.8 121 185-320 512-637 (716)
87 3ow8_A WD repeat-containing pr 25.9 2.8E+02 0.0097 22.9 26.5 105 179-313 208-318 (321)
88 3p6j_A De novo designed beta-t 25.5 2E+02 0.007 21.2 14.2 68 176-254 28-97 (142)
89 3k26_A Polycomb protein EED; W 24.5 2.9E+02 0.01 22.6 30.0 161 67-255 69-257 (366)
90 1zvt_A Topoisomerase IV subuni 24.4 2.9E+02 0.0099 22.5 15.9 119 125-255 33-160 (256)
91 4g56_B MGC81050 protein; prote 23.7 3.3E+02 0.011 22.9 29.7 193 67-318 139-345 (357)
92 1wp5_A Topoisomerase IV; broke 23.6 3.4E+02 0.012 23.0 26.4 229 71-323 44-284 (323)
93 2aq5_A Coronin-1A; WD40 repeat 23.5 3.4E+02 0.012 23.0 26.8 158 7-205 40-206 (402)
94 3f3f_A Nucleoporin SEH1; struc 23.4 2.9E+02 0.01 22.2 30.9 80 67-154 57-144 (351)
95 3f3f_A Nucleoporin SEH1; struc 22.3 3.1E+02 0.011 22.1 24.5 123 67-206 11-143 (351)
96 1zvt_A Topoisomerase IV subuni 22.3 3.2E+02 0.011 22.3 11.6 121 11-159 44-169 (256)
97 1rg8_A Heparin-binding growth 21.7 2.5E+02 0.0086 20.8 7.9 66 67-148 14-81 (146)
98 4gqb_B Methylosome protein 50; 20.7 3.8E+02 0.013 22.5 24.5 246 11-312 30-285 (344)
99 3pbp_A Nucleoporin NUP82; beta 20.4 3.8E+02 0.013 24.2 8.1 73 230-312 125-208 (452)
100 4ery_A WD repeat-containing pr 20.2 3.5E+02 0.012 21.9 26.5 148 67-255 65-220 (312)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=2.6e-62 Score=451.90 Aligned_cols=305 Identities=26% Similarity=0.476 Sum_probs=265.3
Q ss_pred ceeEEeecCCeEEEEEecCC-CCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEE
Q psy5892 3 KITDIACGYGFTVVATKSKD-KNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTI 81 (340)
Q Consensus 3 ~i~~v~~G~~~~~~l~~~~d-g~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~ 81 (340)
+|++|+||..|+++|+ +| |+ ||+||.|.+||||.+.... ...|+++.... ..+|++|+||..|++
T Consensus 69 ~i~~va~G~~ht~al~--~~gg~--v~~wG~n~~GqLG~g~~~~-------~~~p~~v~~l~---~~~i~~ia~G~~h~~ 134 (406)
T 4d9s_A 69 QIVSVTCGADHTVAYS--QSGME--VYSWGWGDFGRLGHGNSSD-------LFTPLPIKALH---GIRIKQIACGDSHCL 134 (406)
T ss_dssp CEEEEEECSSEEEEEE--TTTTE--EEEEECCGGGTTCSSSCCC-------EEEEEECGGGT---TCCEEEEEECSSEEE
T ss_pred CEEEEEeCcceEEEEE--CCCCE--EEEEcCCCCcCCCCCCCCc-------cccceEecccC---CCCEEEEEEChhheE
Confidence 7999999999999994 55 48 9999999999999988643 36777777654 679999999999999
Q ss_pred EEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCC
Q psy5892 82 VITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGH 161 (340)
Q Consensus 82 ~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~ 161 (340)
+|+++|+||+||.|.+||||.+.... ...|..+..+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+.
T Consensus 135 alt~~G~v~~wG~n~~GqLG~g~~~~-----~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~ 209 (406)
T 4d9s_A 135 AVTMEGEVQSWGRNQNGQLGLGDTED-----SLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGD 209 (406)
T ss_dssp EEETTSCEEEEECCTTSTTCSSSCCC-----EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS
T ss_pred EEcCCCcEEEeCCCCCccCCCCCCCC-----cccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCC
Confidence 99999999999999999999986554 2456667777778999999999999999999999999999999999999
Q ss_pred CCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCC-CCccccCceEeecccCcccEEEEEecCc
Q psy5892 162 LNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISE-SEMQISTPRVLSQCKGVSRIVDVASGGS 240 (340)
Q Consensus 162 ~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~-~~~~~~~p~~i~~~~~~~~i~~i~~g~~ 240 (340)
......|.++. .+...+|++|+||.+|+++|+++|+||+||.|.+||||. .......|.+++.+ ...+|++|+||.+
T Consensus 210 ~~~~~~p~~v~-~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~-~~~~v~~i~~G~~ 287 (406)
T 4d9s_A 210 RTDRLVPERVT-STGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEAL-SNSFISQISGGWR 287 (406)
T ss_dssp SCCEEEEEECC-CSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGG-TTSCEEEEEECSS
T ss_pred CCCcCccEEec-ccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEeccc-CCCCEEEEEecCC
Confidence 88888999887 566679999999999999999999999999999999999 56667778888763 3568999999999
Q ss_pred eEEEEcCCCcEEEEc---CCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEecCCcEEEEeCCCC
Q psy5892 241 ACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQY 317 (340)
Q Consensus 241 ~~~~lt~~g~v~~~G---~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~ 317 (340)
|+++|+++|+||+|| +||||.+... ....|.+++.+ ...+|++|+||.+|++||+++|+||+||+|.+
T Consensus 288 hs~alt~~G~v~~wG~n~~GqLG~g~~~-~~~~p~~v~~~--------~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~ 358 (406)
T 4d9s_A 288 HTMALTSDGKLYGWGWNKFGQVGVGNNL-DQCSPVQVRFP--------DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 358 (406)
T ss_dssp EEEEEETTSCEEEEECCTTSTTCSSSSS-CEEEEEEECCG--------GGCCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred EEEEEcCCCeEEEeeCCCCCCCCCCCCC-CCccCEEEecc--------CCCcEEEEEeCCCeEEEEeCCCCEEEecCCCC
Confidence 999999999999999 5666666432 34456665432 24689999999999999999999999999999
Q ss_pred CcccCCCCCCCCccEEeecC
Q psy5892 318 GQLGLGTVEDQPFPLKVAVG 337 (340)
Q Consensus 318 GqLG~g~~~~~~~p~~v~~~ 337 (340)
||||+|+..++..|++|+..
T Consensus 359 GqLG~g~~~~~~~P~~v~~l 378 (406)
T 4d9s_A 359 GQLGIGESVDRNFPKIIEAL 378 (406)
T ss_dssp STTCSSSCCCEEEEEECGGG
T ss_pred CccCCCCCCCCcCCEEeeee
Confidence 99999999999999998743
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=3.8e-62 Score=450.83 Aligned_cols=307 Identities=28% Similarity=0.475 Sum_probs=266.6
Q ss_pred cceeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEE
Q psy5892 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTI 81 (340)
Q Consensus 2 ~~i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~ 81 (340)
.+|++|+||..|+++| ++||+ ||+||.|.+||||.+....+ ..|+++.... ..+|++|+||..|++
T Consensus 16 ~~v~~ia~G~~hs~al--~~~g~--v~~wG~n~~GqLG~g~~~~~-------~~P~~v~~l~---~~~i~~va~G~~ht~ 81 (406)
T 4d9s_A 16 RKVLIISAGASHSVAL--LSGDI--VCSWGRGEDGQLGHGDAEDR-------PSPTQLSALD---GHQIVSVTCGADHTV 81 (406)
T ss_dssp CCEEEEEECSSEEEEE--ETTTE--EEEEECCTTSTTCSSSCCCE-------EEEEECGGGT---TSCEEEEEECSSEEE
T ss_pred cceEEEecCCCeEEEE--EeCCE--EEEEeCCCCCCCCCCCcccC-------cCCEEecccC---CCCEEEEEeCcceEE
Confidence 5799999999999999 68999 99999999999999987643 5666665444 669999999999999
Q ss_pred EEeCCC-cEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCC
Q psy5892 82 VITDNE-GAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLG 160 (340)
Q Consensus 82 ~lt~~g-~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~ 160 (340)
+|+++| +||+||.|.+||||.+.... ...|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+
T Consensus 82 al~~~gg~v~~wG~n~~GqLG~g~~~~-----~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g 156 (406)
T 4d9s_A 82 AYSQSGMEVYSWGWGDFGRLGHGNSSD-----LFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG 156 (406)
T ss_dssp EEETTTTEEEEEECCGGGTTCSSSCCC-----EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSS
T ss_pred EEECCCCEEEEEcCCCCcCCCCCCCCc-----cccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCC
Confidence 999886 99999999999999986533 345566677767899999999999999999999999999999999999
Q ss_pred CCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCC-CCccccCceEeecccCcccEEEEEecC
Q psy5892 161 HLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISE-SEMQISTPRVLSQCKGVSRIVDVASGG 239 (340)
Q Consensus 161 ~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~-~~~~~~~p~~i~~~~~~~~i~~i~~g~ 239 (340)
.......|.++. .+...+|++|+||.+|++||+++|+||+||.|.+||||. .......|.++.. ....+|++|+||.
T Consensus 157 ~~~~~~~p~~v~-~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~i~~va~G~ 234 (406)
T 4d9s_A 157 DTEDSLVPQKIQ-AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTS-TGGEKMSMVACGW 234 (406)
T ss_dssp SCCCEEEEEECG-GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCC-STTCCEEEEEECS
T ss_pred CCCCcccceEec-ccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecc-cCCceEEEEEECC
Confidence 998889999988 567779999999999999999999999999999999999 5566667888765 3457899999999
Q ss_pred ceEEEEcCCCcEEEEc---CCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEecCCcEEEEeCCC
Q psy5892 240 SACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 240 ~~~~~lt~~g~v~~~G---~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~ 316 (340)
+|+++|+++|+||+|| +||+|.+.. .....|.+++.+ .+..|++|+||.+|+++|+++|+||+||+|.
T Consensus 235 ~ht~~l~~~G~v~~wG~n~~GqlG~g~~-~~~~~p~~v~~~--------~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~ 305 (406)
T 4d9s_A 235 RHTISVSYSGALYTYGWSKYGQLGHGDL-EDHLIPHKLEAL--------SNSFISQISGGWRHTMALTSDGKLYGWGWNK 305 (406)
T ss_dssp SEEEEEETTCCEEEEECCTTSTTCSSSC-CCEEEEEECGGG--------TTSCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred CcEEEEcCCCCEEEeeCCCCCCCCCCCC-cCccccEEeccc--------CCCCEEEEEecCCEEEEEcCCCeEEEeeCCC
Confidence 9999999999999999 466666543 234455555442 3467999999999999999999999999999
Q ss_pred CCcccCCCCCCCCccEEeecCC
Q psy5892 317 YGQLGLGTVEDQPFPLKVAVGG 338 (340)
Q Consensus 317 ~GqLG~g~~~~~~~p~~v~~~~ 338 (340)
+||||.++..+...|++|++|.
T Consensus 306 ~GqLG~g~~~~~~~p~~v~~~~ 327 (406)
T 4d9s_A 306 FGQVGVGNNLDQCSPVQVRFPD 327 (406)
T ss_dssp TSTTCSSSSSCEEEEEEECCGG
T ss_pred CCCCCCCCCCCCccCEEEeccC
Confidence 9999999999898999998775
No 3
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=8.7e-62 Score=446.17 Aligned_cols=307 Identities=24% Similarity=0.424 Sum_probs=265.1
Q ss_pred ceeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEEE
Q psy5892 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIV 82 (340)
Q Consensus 3 ~i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~~ 82 (340)
+|++|+||..|+++| ++||+ ||+||.|.+||||.+.... ...|++++..... ..++++|+||.+|+++
T Consensus 54 ~i~~i~~G~~~~~~l--~~~G~--v~~wG~n~~GqLG~g~~~~-------~~~p~~v~~~~~~-~~~~v~i~~G~~h~~a 121 (389)
T 3kci_A 54 RPVQLIGGEQTLFAV--TADGK--LYATGYGAGGRLGIGGTES-------VSTPTLLESIQHV-FIKKVAVNSGGKHCLA 121 (389)
T ss_dssp CEEEEEEETTEEEEE--ETTSC--EEEEECCGGGTTSSSSSCC-------EEEEEECGGGTTS-CEEEEEECTTCSEEEE
T ss_pred ceEEEEeCCCeEEEE--cCCCc--EEEEECCCCCCCCCCCcCC-------ccCCEEcccccCC-ceeEEEECcCCCeEEE
Confidence 688999999999999 69999 9999999999999987643 3667777654311 3466899999999999
Q ss_pred EeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCCC
Q psy5892 83 ITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHL 162 (340)
Q Consensus 83 lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~ 162 (340)
|+++|+||+||.|.+||||.+.... ...|..++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+..
T Consensus 122 l~~~G~v~~wG~n~~GqLG~g~~~~-----~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~ 196 (389)
T 3kci_A 122 LSSEGEVYSWGEAEDGKLGHGNRSP-----CDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDS 196 (389)
T ss_dssp EETTSCEEEEECCGGGTTCSSSCCC-----EEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSC
T ss_pred EcCCCCEEEEeCCCCCcCCCCCCcc-----CcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCC
Confidence 9999999999999999999986543 24566677777789999999999999999999999999999999999999
Q ss_pred CCeeeceeecccccCccEEEEEecC--cEEEEEeCCCCEEEEeCCCCCCCCC-CCccccCceEeecccCcccEEEEEecC
Q psy5892 163 NNQETPCLVRGEIEGERIVKLSSAV--DCVLAVSDKGDVFGWGNSEYGQISE-SEMQISTPRVLSQCKGVSRIVDVASGG 239 (340)
Q Consensus 163 ~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~l~~~g~v~~wG~n~~gqlg~-~~~~~~~p~~i~~~~~~~~i~~i~~g~ 239 (340)
.....|.++. .+...+|++|+||. .|+++|+++|+||+||.|.+||||. .......|.+++.+ ...+|++|+||.
T Consensus 197 ~~~~~p~~v~-~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~-~~~~v~~v~~G~ 274 (389)
T 3kci_A 197 EDQLKPKLVE-ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGVVKVECGS 274 (389)
T ss_dssp CCEEEEEECG-GGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG-TTSCEEEEEEET
T ss_pred cccccceEec-ccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc-CCCcEEEEeCCC
Confidence 8889999988 56777999999995 8999999999999999999999999 56666778888763 356899999999
Q ss_pred ceEEEEcCCCcEEEEc---CCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEecCCcEEEEeCCC
Q psy5892 240 SACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 240 ~~~~~lt~~g~v~~~G---~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~ 316 (340)
+|+++|+++|+||+|| +|+||.+.. .....|..++.+ .+.+|++|+||.+|+++|+++|+||+||+|.
T Consensus 275 ~hs~alt~~G~v~~wG~n~~GqLG~g~~-~~~~~P~~v~~l--------~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 275 QFSVALTKSGAVYTWGKGDYHRLGHGSD-DHVRRPRQVQGL--------QGKKVIAIATGSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECGGG--------TTCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred CEEEEEeCCCeEEEEeCCCCCCCCCCCC-ccccCCeEeccC--------CCCCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence 9999999999999999 467777653 344556666542 3468999999999999999999999999999
Q ss_pred CCcccCCCCCCCCccEEeecC
Q psy5892 317 YGQLGLGTVEDQPFPLKVAVG 337 (340)
Q Consensus 317 ~GqLG~g~~~~~~~p~~v~~~ 337 (340)
+||||+|+.++...|++|+.+
T Consensus 346 ~GqLG~g~~~~~~~P~~v~~~ 366 (389)
T 3kci_A 346 EGQLGDGTTNAIQRPRLVAAL 366 (389)
T ss_dssp TSTTCSSSCCCEEEEEECGGG
T ss_pred CCcCCCCCCCCccCcEEeccc
Confidence 999999999999999998754
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=9.2e-60 Score=436.31 Aligned_cols=305 Identities=26% Similarity=0.367 Sum_probs=253.7
Q ss_pred cceeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEE
Q psy5892 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTI 81 (340)
Q Consensus 2 ~~i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~ 81 (340)
.+|++|+||..|+++| ++||+ ||+||.|.+||||.+..... ....|+++.+ ..+|++|+||.+|++
T Consensus 59 ~~i~~va~G~~hs~~l--~~~G~--v~~wG~n~~GqLG~~~~~~~-----~~~~P~~v~l-----~~~i~~va~G~~hs~ 124 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCL--SKSGQ--VYSFGCNDEGALGRDTSVEG-----SEMVPGKVEL-----QEKVVQVSAGDSHTA 124 (413)
T ss_dssp SCEEEEEECSSEEEEE--ETTSC--EEEEECCTTSTTCSCCCSTT-----GGGSCEECCC-----CSCEEEEEECSSEEE
T ss_pred CCeEEEEeCCCeEEEE--cCCCC--EEEEECCCCCCCCCCCCCCc-----cccCCeEecC-----CCcEEEEecCCCeEE
Confidence 4799999999999999 68999 99999999999999876421 1245666654 348999999999999
Q ss_pred EEeCCCcEEEEec--CCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCC
Q psy5892 82 VITDNEGAFTFGN--NSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGL 159 (340)
Q Consensus 82 ~lt~~g~l~~~G~--n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~ 159 (340)
+|+++|+||+||. |.+||||.+..... ...|..+ +...+|++|+||.+|+++|+++|+||+||.|.+||||.
T Consensus 125 alt~~G~v~~wG~~~n~~GqlG~~~~~~~----~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~ 198 (413)
T 1a12_A 125 ALTDDGRVFLWGSFRDNNGVIGLLEPMKK----SMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGR 198 (413)
T ss_dssp EEETTSCEEEEECEEETTEEEESSBBTBC----EEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS
T ss_pred EEcCCCcEEEeeCCcCCCCccCcCCcccc----ccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCC
Confidence 9999999999999 99999998754432 1223344 33579999999999999999999999999999999998
Q ss_pred CCCCC-----------eeeceeecccc----cCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCC-CCccccCceEe
Q psy5892 160 GHLNN-----------QETPCLVRGEI----EGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISE-SEMQISTPRVL 223 (340)
Q Consensus 160 ~~~~~-----------~~~p~~~~~~~----~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~-~~~~~~~p~~i 223 (340)
+.... ...|+.+.... ...+|++|+||.+|++||+++|+||+||.|.+||||. .......|.++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v 278 (413)
T 1a12_A 199 VPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNL 278 (413)
T ss_dssp CGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEEC
T ss_pred CccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEc
Confidence 65321 23554444211 3468999999999999999999999999999999999 55566778888
Q ss_pred ecccC-cccEEEEEecCceEEEEcCCCcEEEEc---CCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCc
Q psy5892 224 SQCKG-VSRIVDVASGGSACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCT 299 (340)
Q Consensus 224 ~~~~~-~~~i~~i~~g~~~~~~lt~~g~v~~~G---~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~ 299 (340)
..+.. ..+|++|+||.+|+++|+++|+||+|| +||||.+........|.+++.+ .+|++|+||.+|
T Consensus 279 ~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l----------~~v~~v~~G~~h 348 (413)
T 1a12_A 279 TSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL----------PAVSSVACGASV 348 (413)
T ss_dssp GGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSS----------SSEEEEEECSSE
T ss_pred hhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEeccc----------CceeEEEECcce
Confidence 76432 256999999999999999999999999 5778877555556677777642 389999999999
Q ss_pred eEEEecCCcEEEEeCCCCCcccCCCCCCCCccEEeec
Q psy5892 300 FGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAV 336 (340)
Q Consensus 300 ~~~lt~~g~vy~wG~n~~GqLG~g~~~~~~~p~~v~~ 336 (340)
+++|+++|+||+||.|.+||||.|+.++...|++|+.
T Consensus 349 s~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~ 385 (413)
T 1a12_A 349 GYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMG 385 (413)
T ss_dssp EEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCS
T ss_pred EEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccc
Confidence 9999999999999999999999999988888988874
No 5
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=4.1e-59 Score=433.45 Aligned_cols=301 Identities=24% Similarity=0.347 Sum_probs=250.7
Q ss_pred CcceeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeE
Q psy5892 1 MIKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHT 80 (340)
Q Consensus 1 ~~~i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~ 80 (340)
+++|++|+||..|+++| +.||+ ||+||.|.+||||.+..... ....|+++.+ ..+|++|+||..|+
T Consensus 74 l~~v~~va~G~~h~~~l--~~~G~--v~~wG~n~~GqLG~~~~~~~-----~~~~P~~v~~-----~~~i~~va~G~~hs 139 (423)
T 3mvd_K 74 IPDAVDISAGGMHNLVL--TKSGD--IYSFGCNDEGALGRDTSEDG-----SESKPDLIDL-----PGKALCISAGDSHS 139 (423)
T ss_dssp CSSEEEEEECSSEEEEE--ETTSC--EEEEECCSSSTTCSCCCSTT-----SSSSCEECCC-----SSCEEEEEECSSEE
T ss_pred CCCceEEeeCCCeEEEE--eCCCe--EEEeECCCCcCCCCCCcCCc-----cccCCeEEcC-----CCCEEEEEcCcCeE
Confidence 46799999999999999 69999 99999999999999886532 1234666654 45899999999999
Q ss_pred EEEeCCCcEEEEec--CCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCC
Q psy5892 81 IVITDNEGAFTFGN--NSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTG 158 (340)
Q Consensus 81 ~~lt~~g~l~~~G~--n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg 158 (340)
++|+++|+||+||. |.+||||.+..... +.++..+...+|++|+||.+|+++|+++|+||+||.|.+||||
T Consensus 140 ~al~~~G~v~~wG~~~n~~GqlG~~~~~~~-------~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG 212 (423)
T 3mvd_K 140 ACLLEDGRVFAWGSFRDSHGNMGLTIDGNK-------RTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLG 212 (423)
T ss_dssp EEEETTSCEEEEECEECSSSEEESBTTBCE-------EEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTS
T ss_pred EEEeCCCeEEEEeCCCCCCCCcCcCCCCCC-------ceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccC
Confidence 99999999999999 99999998754432 2223334468999999999999999999999999999999999
Q ss_pred CCCCC-----------CeeeceeecccccCccEEEEEecCcEEEEE-eCCCCEEEEeCCCCCCCCC-CCc--cccCceEe
Q psy5892 159 LGHLN-----------NQETPCLVRGEIEGERIVKLSSAVDCVLAV-SDKGDVFGWGNSEYGQISE-SEM--QISTPRVL 223 (340)
Q Consensus 159 ~~~~~-----------~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l-~~~g~v~~wG~n~~gqlg~-~~~--~~~~p~~i 223 (340)
.+... ....|.++. .....+|++|+||.+|++++ +++|+||+||.|.++|||. ... ....|.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~p~~v~-~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~ 291 (423)
T 3mvd_K 213 RLSERSISGEGRRGKRDLLRPTQLI-ITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT 291 (423)
T ss_dssp SCCTTTTTSCSTTTTTTTSSCEEEC-CTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEE
T ss_pred CCcccccccccccccccccCCeEEe-ecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEc
Confidence 87642 345677776 34556899999999999999 6999999999999999998 333 33344443
Q ss_pred ecccCcccEEEEEecCceEEEEcCCCcEEEEc---CCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCce
Q psy5892 224 SQCKGVSRIVDVASGGSACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTF 300 (340)
Q Consensus 224 ~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G---~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~ 300 (340)
. ..+|++|+||.+|+++|+++|+||+|| +|+||.+........|..++.+ ..+|++|+||.+|+
T Consensus 292 ~----~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l---------~~~v~~ia~G~~hs 358 (423)
T 3mvd_K 292 E----LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKL---------TEKIVSVGCGEVCS 358 (423)
T ss_dssp C----CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTC---------CSCEEEEEEETTEE
T ss_pred C----CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccC---------CCCEEEEEcCCCeE
Confidence 3 468999999999999999999999999 5777777655444566666542 23899999999999
Q ss_pred EEEecCCcEEEEeCCCCCcccCCCCCCCCccEEeec
Q psy5892 301 GAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAV 336 (340)
Q Consensus 301 ~~lt~~g~vy~wG~n~~GqLG~g~~~~~~~p~~v~~ 336 (340)
+||+++|+||+||.|.+||||+|+.++...|++|..
T Consensus 359 ~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~ 394 (423)
T 3mvd_K 359 YAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVS 394 (423)
T ss_dssp EEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCS
T ss_pred EEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeC
Confidence 999999999999999999999999999999999984
No 6
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-59 Score=440.26 Aligned_cols=317 Identities=22% Similarity=0.337 Sum_probs=247.9
Q ss_pred ceeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCce----------------eeeeeeecC---CCC
Q psy5892 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLE----------------LVMSFVRIP---LPV 63 (340)
Q Consensus 3 ~i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~----------------~~~~p~~v~---~~~ 63 (340)
+|++|+||..|+++| +.||+ ||+||.|.+||||.+.......... ....|+++. ++.
T Consensus 68 ~i~~va~G~~Ht~al--t~~G~--v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~ 143 (473)
T 3of7_A 68 KIISFAVGGMHTLAL--DEESN--VWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPP 143 (473)
T ss_dssp CEEEEEECSSEEEEE--ETTCC--EEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHH
T ss_pred CEEEEEeCCCeEEEE--ecCCe--EEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCc
Confidence 799999999999999 68999 9999999999999987654211100 123455554 220
Q ss_pred CCCCCCeEEEEeCCCeEEEEeCCCcEEEEec--CCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEE
Q psy5892 64 KHPSTQIKHLATGRAHTIVITDNEGAFTFGN--NSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLT 141 (340)
Q Consensus 64 ~~~~~~i~~i~~g~~~~~~lt~~g~l~~~G~--n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt 141 (340)
.....+|++|+||..|+++|+++|+||+||. |.+||||.+... ......|..++.+.+.+|++|+||.+|+++|+
T Consensus 144 ~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~---~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt 220 (473)
T 3of7_A 144 LAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDK---IKIQKTPWKVPTFSKYNIVQLAPGKDHILFLD 220 (473)
T ss_dssp HHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTT---BSCEEEEEECCCCCSSCEEEEEECSSEEEEEE
T ss_pred ccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCC---CccccCcEEccccCCCCEEEEEecCCeEEEEe
Confidence 0015799999999999999999999999998 689999985432 22344667777777788999999999999999
Q ss_pred cCCcEEEEEeCCCCCCCCCCCCC----eeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCCC---
Q psy5892 142 ESGKVYSCGWGADGQTGLGHLNN----QETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESE--- 214 (340)
Q Consensus 142 ~~g~vy~wG~n~~gqlg~~~~~~----~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~--- 214 (340)
++|+||+||.|.++|||.+.... ...|.++. ..+|++|+||.+|++||+++|+||+||.|.+||||...
T Consensus 221 ~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~----~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~ 296 (473)
T 3of7_A 221 EEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFG----LRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVE 296 (473)
T ss_dssp TTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECS----CCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCC
T ss_pred CCCeEEEEeCCCCCCCCCCccccccccccCceecC----CcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCccc
Confidence 99999999999999999876543 23444443 25899999999999999999999999999999999832
Q ss_pred --ccccCceEeecccCcccEEEEEecCceEEEEcCCCcEEEEc---CCCCCCCCCCc---------cccCceeecccccC
Q psy5892 215 --MQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWG---YGLLGQGPKVS---------RSMKPTLIPSTLFG 280 (340)
Q Consensus 215 --~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G---~g~~g~~~~~~---------~~~~p~~~~~~~~~ 280 (340)
.....|.++.. +...+|++|+||..|+++|+++|+||+|| +|+||.+.... ........|..+.
T Consensus 297 ~~~~~~~P~~v~~-~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~- 374 (473)
T 3of7_A 297 DGALVTKPKRLAL-PDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLN- 374 (473)
T ss_dssp TTCEEEEEEECCC-CTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECC-
T ss_pred CCceeeccccccc-cCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccC-
Confidence 23456777775 34578999999999999999999999999 56777654210 0011111222111
Q ss_pred CcccCCCCCeEEEEccCCceEEEecCCcEEEEeCCCCCcccCCC-CCCCCccEEeecC
Q psy5892 281 QHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGT-VEDQPFPLKVAVG 337 (340)
Q Consensus 281 ~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~GqLG~g~-~~~~~~p~~v~~~ 337 (340)
...+|++|+||.+|++||+++|+||+||.|.+||||+|+ .++...|++|+.+
T Consensus 375 -----~~~~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~ 427 (473)
T 3of7_A 375 -----NVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNT 427 (473)
T ss_dssp -----SSCCEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCT
T ss_pred -----CCCceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEeccc
Confidence 123899999999999999999999999999999999999 7788889999743
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.9e-58 Score=420.67 Aligned_cols=302 Identities=24% Similarity=0.383 Sum_probs=243.7
Q ss_pred EEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEEEEeC
Q psy5892 6 DIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITD 85 (340)
Q Consensus 6 ~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~~lt~ 85 (340)
++..-..+.++| +.||+ ||+||.|.+||||.++.. ....|++++... ..+|++|+||..|+++|++
T Consensus 5 ~~~~~~~~~~~l--~~~G~--v~~wG~n~~GqLG~~~~~-------~~~~p~~v~~~~---~~~i~~i~~G~~~~~~l~~ 70 (389)
T 3kci_A 5 HHHSSGRENLYF--QGSGT--IYGWGHNHRGQLGGIEGA-------KVKVPTPCEALA---TLRPVQLIGGEQTLFAVTA 70 (389)
T ss_dssp ------------------C--EEEEEECTTSTTSSCSCS-------EEEEEEECHHHH---HTCEEEEEEETTEEEEEET
T ss_pred ccccCcccceeE--CCCCe--EEEeeCCCCccCCCCcCc-------cccCCEeccccc---CCceEEEEeCCCeEEEEcC
Confidence 444444455555 79999 999999999999977643 346788877655 6689999999999999999
Q ss_pred CCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCC--ceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCCCC
Q psy5892 86 NEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGE--KIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLN 163 (340)
Q Consensus 86 ~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~--~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~ 163 (340)
+|+||+||.|.+||||.+..... ..|..++.+... ++++|+||.+|+++|+++|+||+||.|.+||||.+...
T Consensus 71 ~G~v~~wG~n~~GqLG~g~~~~~-----~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~ 145 (389)
T 3kci_A 71 DGKLYATGYGAGGRLGIGGTESV-----STPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRS 145 (389)
T ss_dssp TSCEEEEECCGGGTTSSSSSCCE-----EEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCC
T ss_pred CCcEEEEECCCCCCCCCCCcCCc-----cCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCc
Confidence 99999999999999999865432 344455554443 45789999999999999999999999999999999998
Q ss_pred CeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCC-CCccccCceEeecccCcccEEEEEecC--c
Q psy5892 164 NQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISE-SEMQISTPRVLSQCKGVSRIVDVASGG--S 240 (340)
Q Consensus 164 ~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~-~~~~~~~p~~i~~~~~~~~i~~i~~g~--~ 240 (340)
....|.++. .+...+|++|+||.+|++||+++|+||+||.|.+||||. .......|++++.+ ...+|++|+||. .
T Consensus 146 ~~~~p~~v~-~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~-~~~~v~~ia~G~g~~ 223 (389)
T 3kci_A 146 PCDRPRVIE-SLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEAL-QGHRVVDIACGSGDA 223 (389)
T ss_dssp CEEEEEECG-GGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG-TTSCEEEEEECCSSC
T ss_pred cCcCCeEec-ccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEeccc-CCCeEEEEEEcCCCc
Confidence 889999988 567779999999999999999999999999999999999 55666778888763 457899999994 8
Q ss_pred eEEEEcCCCcEEEEc---CCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEecCCcEEEEeCCCC
Q psy5892 241 ACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQY 317 (340)
Q Consensus 241 ~~~~lt~~g~v~~~G---~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~ 317 (340)
|+++|+++|+||+|| +|+||.+.. .....|.+++.+ .+.+|++|+||.+|++||+++|+||+||.|.+
T Consensus 224 ~t~~l~~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~~--------~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~ 294 (389)
T 3kci_A 224 QTLCLTDDDTVWSWGDGDYGKLGRGGS-DGCKVPMKIDSL--------TGLGVVKVECGSQFSVALTKSGAVYTWGKGDY 294 (389)
T ss_dssp EEEEEETTTEEEEEECCGGGTTSSSSC-CCEEEEEECGGG--------TTSCEEEEEEETTEEEEEETTSCEEEEECCGG
T ss_pred EEEEEccCCEEEEEeCCCCCCCCCCCC-CCccccEEeccc--------CCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Confidence 999999999999999 567776643 234456655542 24679999999999999999999999999999
Q ss_pred CcccCCCCCCCCccEEeecC
Q psy5892 318 GQLGLGTVEDQPFPLKVAVG 337 (340)
Q Consensus 318 GqLG~g~~~~~~~p~~v~~~ 337 (340)
||||.++.++...|++|+.+
T Consensus 295 GqLG~g~~~~~~~P~~v~~l 314 (389)
T 3kci_A 295 HRLGHGSDDHVRRPRQVQGL 314 (389)
T ss_dssp GTTCSSSCCCEEEEEECGGG
T ss_pred CCCCCCCCccccCCeEeccC
Confidence 99999999988889988744
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=4.5e-57 Score=419.73 Aligned_cols=301 Identities=22% Similarity=0.287 Sum_probs=244.2
Q ss_pred cceeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEE
Q psy5892 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTI 81 (340)
Q Consensus 2 ~~i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~ 81 (340)
.++++|+||..|++++ +.||+ ||+||.|.+||||.+.... ....|++++. ..+|++|+||..|++
T Consensus 24 ~~~~~ia~g~~~~~~l--~~~G~--v~~wG~n~~GqLG~g~~~~------~~~~p~~v~~-----l~~v~~va~G~~h~~ 88 (423)
T 3mvd_K 24 AKRARIAFHLELPKRR--TVLGN--VLVCGNGDVGQLGLGEDIL------ERKRLSPVAG-----IPDAVDISAGGMHNL 88 (423)
T ss_dssp -----CCCCCCCCCCC--CCCEE--EEEEEECTTSTTCSCSSCC------EEEEEEECCS-----CSSEEEEEECSSEEE
T ss_pred ceeeEEecCCccceee--cCCCc--EEEEeCCCCCCCCCCCCCc------cCcCCeEccC-----CCCceEEeeCCCeEE
Confidence 4678999999999999 79999 9999999999999986532 2355666654 447999999999999
Q ss_pred EEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEe--CCCCCCCC
Q psy5892 82 VITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGW--GADGQTGL 159 (340)
Q Consensus 82 ~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~--n~~gqlg~ 159 (340)
+|+++|+||+||.|.+||||.+....... ..|..+.. ..+|++|+||.+|+++|+++|+||+||. |.++|||.
T Consensus 89 ~l~~~G~v~~wG~n~~GqLG~~~~~~~~~---~~P~~v~~--~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~ 163 (423)
T 3mvd_K 89 VLTKSGDIYSFGCNDEGALGRDTSEDGSE---SKPDLIDL--PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGL 163 (423)
T ss_dssp EEETTSCEEEEECCSSSTTCSCCCSTTSS---SSCEECCC--SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEES
T ss_pred EEeCCCeEEEeECCCCcCCCCCCcCCccc---cCCeEEcC--CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCc
Confidence 99999999999999999999987654322 23333332 3689999999999999999999999998 99999999
Q ss_pred CCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCCC------------ccccCceEeeccc
Q psy5892 160 GHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESE------------MQISTPRVLSQCK 227 (340)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~------------~~~~~p~~i~~~~ 227 (340)
+.......|.++. ...+|++|+||.+|++||+++|+||+||.|.+||||... .....|.++.. .
T Consensus 164 ~~~~~~~~p~~~~---~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~-~ 239 (423)
T 3mvd_K 164 TIDGNKRTPIDLM---EGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLII-T 239 (423)
T ss_dssp BTTBCEEEEEESS---TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECC-T
T ss_pred CCCCCCceeeEec---CCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEee-c
Confidence 8887777776653 556899999999999999999999999999999999822 34567888875 4
Q ss_pred CcccEEEEEecCceEEEE-cCCCcEEEEc---CCCCCCCCC-CccccCceeecccccCCcccCCCCCeEEEEccCCceEE
Q psy5892 228 GVSRIVDVASGGSACTML-NDEGLVYSWG---YGLLGQGPK-VSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGA 302 (340)
Q Consensus 228 ~~~~i~~i~~g~~~~~~l-t~~g~v~~~G---~g~~g~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~ 302 (340)
...+|++|+||.+|++++ +++|+||+|| +|++|.+.. ......|..++ ..+|++|+||.+|+++
T Consensus 240 ~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-----------~~~v~~ia~G~~ht~a 308 (423)
T 3mvd_K 240 RAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-----------LKDIRHIAGGQHHTVI 308 (423)
T ss_dssp TCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-----------CCSEEEEEECSSEEEE
T ss_pred CCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-----------CCCeEEEEcccCeEEE
Confidence 467899999999999999 7999999999 556666322 22223344332 2589999999999999
Q ss_pred EecCCcEEEEeCCCCCcccCCCCCC-CCccEEeecC
Q psy5892 303 ITNFGHLYMWGKNQYGQLGLGTVED-QPFPLKVAVG 337 (340)
Q Consensus 303 lt~~g~vy~wG~n~~GqLG~g~~~~-~~~p~~v~~~ 337 (340)
|+++|+||+||.|.+||||+++..+ ...|++|+.+
T Consensus 309 lt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l 344 (423)
T 3mvd_K 309 LTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKL 344 (423)
T ss_dssp EETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTC
T ss_pred EeCCCcEEEEECCCCCCCCCCCccccccCceEeccC
Confidence 9999999999999999999998765 4567777654
No 9
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.8e-56 Score=414.31 Aligned_cols=301 Identities=22% Similarity=0.359 Sum_probs=243.0
Q ss_pred EEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEEEEeC
Q psy5892 6 DIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITD 85 (340)
Q Consensus 6 ~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~~lt~ 85 (340)
+.+.+..|++++ +.||+ ||+||.|.+||||++..... ...|+.+.. ..+|++|+||..|+++|++
T Consensus 12 ~~~~~~~h~~~l--~~~g~--v~~wG~n~~GqLG~g~~~~~------~~~P~~v~~-----~~~i~~va~G~~hs~~l~~ 76 (413)
T 1a12_A 12 SKKVKVSHRSHS--TEPGL--VLTLGQGDVGQLGLGENVME------RKKPALVSI-----PEDVVQAEAGGMHTVCLSK 76 (413)
T ss_dssp -CCCCCCCTTCC--CCCBE--EEEEEECTTSTTCSCTTCCE------EEEEEEECC-----SSCEEEEEECSSEEEEEET
T ss_pred hhhhccccceee--cCCCc--EEEEECCCCCcCCCCCCccc------cccceEccC-----CCCeEEEEeCCCeEEEEcC
Confidence 566778999998 79999 99999999999999986431 356777664 4699999999999999999
Q ss_pred CCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEe--CCCCCCCCCCCC
Q psy5892 86 NEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGW--GADGQTGLGHLN 163 (340)
Q Consensus 86 ~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~--n~~gqlg~~~~~ 163 (340)
+|+||+||.|.+||||.+....... ..|..+ .+ ..+|++|+||.+|+++|+++|+||+||. |.+||||.+...
T Consensus 77 ~G~v~~wG~n~~GqLG~~~~~~~~~---~~P~~v-~l-~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~ 151 (413)
T 1a12_A 77 SGQVYSFGCNDEGALGRDTSVEGSE---MVPGKV-EL-QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPM 151 (413)
T ss_dssp TSCEEEEECCTTSTTCSCCCSTTGG---GSCEEC-CC-CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBT
T ss_pred CCCEEEEECCCCCCCCCCCCCCccc---cCCeEe-cC-CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCcc
Confidence 9999999999999999987643221 223333 23 3589999999999999999999999998 899999987755
Q ss_pred C-eeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCCCc------------cccCceEeeccc---
Q psy5892 164 N-QETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEM------------QISTPRVLSQCK--- 227 (340)
Q Consensus 164 ~-~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~------------~~~~p~~i~~~~--- 227 (340)
. ...|.++. ...+|++|+||.+|+++|+++|+||+||.|.+||||.... ....|+.+....
T Consensus 152 ~~~~~P~~v~---~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~ 228 (413)
T 1a12_A 152 KKSMVPVQVQ---LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGS 228 (413)
T ss_dssp BCEEEEEEEC---CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSC
T ss_pred ccccCCEEec---CCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccc
Confidence 4 34577763 4568999999999999999999999999999999998321 235676665422
Q ss_pred -CcccEEEEEecCceEEEEcCCCcEEEEc---CCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEE
Q psy5892 228 -GVSRIVDVASGGSACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAI 303 (340)
Q Consensus 228 -~~~~i~~i~~g~~~~~~lt~~g~v~~~G---~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~l 303 (340)
...+|++|+||.+|+++|+++|+||+|| +||||.+... ....|..++.+.- ...+|++|+||.+|+++|
T Consensus 229 ~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~-~~~~P~~v~~l~~------~~~~v~~ia~G~~hs~al 301 (413)
T 1a12_A 229 RGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE-SCFIPQNLTSFKN------STKSWVGFSGGQHHTVCM 301 (413)
T ss_dssp CSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCS-CEEEEEECGGGCC------TTCCEEEEEECSSEEEEE
T ss_pred cCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCC-cccccEEchhccC------CCceEEEEecccceEEEE
Confidence 3568999999999999999999999999 4667766442 3355666554210 125699999999999999
Q ss_pred ecCCcEEEEeCCCCCcccCC-CCCCCCccEEeec
Q psy5892 304 TNFGHLYMWGKNQYGQLGLG-TVEDQPFPLKVAV 336 (340)
Q Consensus 304 t~~g~vy~wG~n~~GqLG~g-~~~~~~~p~~v~~ 336 (340)
+++|+||+||.|.+||||+| +.++...|++|+.
T Consensus 302 ~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~ 335 (413)
T 1a12_A 302 DSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR 335 (413)
T ss_dssp ETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS
T ss_pred eCCCCEEEeeCCCCCccCCCCCCccccCCEEecc
Confidence 99999999999999999999 4566777887763
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-55 Score=415.33 Aligned_cols=302 Identities=23% Similarity=0.363 Sum_probs=240.3
Q ss_pred cceeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEE
Q psy5892 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTI 81 (340)
Q Consensus 2 ~~i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~ 81 (340)
..|....++..|++++ +.+|+ ||+||.|.+||||.++... ......|+.+++.... ..+|++|+||..|++
T Consensus 10 ~~~~~~~~~~~h~~~~--~~~g~--v~~wG~n~~GqLG~G~~~~----~~~~~~P~~~~~~~~~-~~~i~~va~G~~Ht~ 80 (473)
T 3of7_A 10 SHIINAQEDYKHMYLS--VQPLD--IFCWGTGSMCELGLGPLAK----NKEVKRPRLNPFLPRD-EAKIISFAVGGMHTL 80 (473)
T ss_dssp TTCCCCGGGGHHHHCC--SSCCE--EEEEEECTTSTTCSCSCGG----GGEEEEEEECTTSCTT-TTCEEEEEECSSEEE
T ss_pred hhhhhhcccccccccC--CCCcc--EEEEcCCCCCccCCCCCcc----cccccCcccccccccC-CCCEEEEEeCCCeEE
Confidence 4567778888899888 68998 9999999999999998542 1334667666654221 569999999999999
Q ss_pred EEeCCCcEEEEecCCCCCccCCCCCCcccc------------------CCceeccccc--c----CCCceEEEEccCCee
Q psy5892 82 VITDNEGAFTFGNNSFGQCGRGIVQEEDYQ------------------GKWFCHNIAD--L----EGEKIMDAVCGQDHT 137 (340)
Q Consensus 82 ~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~------------------~~~~~~~~~~--~----~~~~i~~i~~g~~~~ 137 (340)
+|+++|+||+||.|.+||||.+........ ....|..++. + ...+|++|+||..|+
T Consensus 81 alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs 160 (473)
T 3of7_A 81 ALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMS 160 (473)
T ss_dssp EEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEE
T ss_pred EEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEE
Confidence 999999999999999999999865542100 0123334433 3 258999999999999
Q ss_pred EEEEcCCcEEEEEe--CCCCCCCCCCC--CCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCC
Q psy5892 138 LFLTESGKVYSCGW--GADGQTGLGHL--NNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISES 213 (340)
Q Consensus 138 ~~lt~~g~vy~wG~--n~~gqlg~~~~--~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~ 213 (340)
++|+++|+||+||. +.+||||.... .....|.+++ .+...+|++|+||.+|++||+++|+||+||.|.+||||..
T Consensus 161 ~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~-~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~ 239 (473)
T 3of7_A 161 CALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVP-TFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRK 239 (473)
T ss_dssp EEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECC-CCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSC
T ss_pred EEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEcc-ccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCC
Confidence 99999999999998 68899998443 4567888887 5666789999999999999999999999999999999982
Q ss_pred -Cc----cccCceEeecccCcccEEEEEecCceEEEEcCCCcEEEEc---CCCCCCCCCCc---cccCceeecccccCCc
Q psy5892 214 -EM----QISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWG---YGLLGQGPKVS---RSMKPTLIPSTLFGQH 282 (340)
Q Consensus 214 -~~----~~~~p~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G---~g~~g~~~~~~---~~~~p~~~~~~~~~~~ 282 (340)
.. ....|.++.. .+|++|+||.+|+++|+++|+||+|| +||+|.+.... ....|..++.+
T Consensus 240 ~~~~~~~~~~~p~~~~~----~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~----- 310 (473)
T 3of7_A 240 VMERFRLKTLDPRPFGL----RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP----- 310 (473)
T ss_dssp CCGGGTTTTCSCEECSC----CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCC-----
T ss_pred ccccccccccCceecCC----cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecccccccc-----
Confidence 22 2345655532 68999999999999999999999999 56777665431 22345555432
Q ss_pred ccCCCCCeEEEEccCCceEEEecCCcEEEEeCCCCCcccCCCC
Q psy5892 283 QFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTV 325 (340)
Q Consensus 283 ~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~GqLG~g~~ 325 (340)
.+.+|++|+||.+|+++|+++|+||+||.|.+||||++..
T Consensus 311 ---~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~ 350 (473)
T 3of7_A 311 ---DNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKD 350 (473)
T ss_dssp ---TTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGG
T ss_pred ---CCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCcc
Confidence 2468999999999999999999999999999999999753
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.4e-49 Score=348.36 Aligned_cols=232 Identities=25% Similarity=0.367 Sum_probs=196.0
Q ss_pred CcceeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeE
Q psy5892 1 MIKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHT 80 (340)
Q Consensus 1 ~~~i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~ 80 (340)
+++|++|+||..|+++| + ||+ ||+||.|.+||||. |. .. ..+|++|+||..|+
T Consensus 23 ~~~i~~ia~G~~h~~~l--~-~G~--v~~wG~n~~Gqlg~---------------p~--~~-----~~~i~~ia~G~~hs 75 (282)
T 3qhy_B 23 QSGVDAIAGGYFHGLAL--K-GGK--VLGWGANLNGQLTM---------------PA--AT-----QSGVDAIAAGNYHS 75 (282)
T ss_dssp SSSCCEEEECSSEEEEE--E-TTE--EEEEECCSSSTTSC---------------CG--GG-----GSCCCEEEECSSEE
T ss_pred cCCCcEEEeCCCeEEEE--E-CCE--EEEEeCCCCCCCCC---------------Cc--cC-----CCCEEEEEeCCCEE
Confidence 45899999999999998 6 999 99999999999994 11 11 44899999999999
Q ss_pred EEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCC
Q psy5892 81 IVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLG 160 (340)
Q Consensus 81 ~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~ 160 (340)
++|+ +|+||+||.|.+||||.+ ..+ ..+|++|+||.+|+++|+ +|+||+||.|.++|||..
T Consensus 76 ~~l~-~G~v~~wG~n~~Gqlg~P-------------~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~ 136 (282)
T 3qhy_B 76 LALK-DGEVIAWGGNEDGQTTVP-------------AEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP 136 (282)
T ss_dssp EEEE-TTEEEEEECCTTSTTCCC-------------GGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCC
T ss_pred EEEE-CCEEEEeeCCCCCCCCCC-------------ccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCC
Confidence 9997 999999999999999852 122 258999999999999999 999999999999999842
Q ss_pred CCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEecCc
Q psy5892 161 HLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGS 240 (340)
Q Consensus 161 ~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g~~ 240 (340)
. + ...+|++|+||.+|+++|+ +|+||+||.|.++||+. |.++ ..+|++|+||.+
T Consensus 137 ~--------~-----~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~-------p~~~-----~~~v~~i~~G~~ 190 (282)
T 3qhy_B 137 A--------E-----AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV-------PAEA-----QSGVDDVAGGIF 190 (282)
T ss_dssp G--------G-----GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC-------CGGG-----GSSEEEEEECSS
T ss_pred c--------c-----CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC-------ceec-----CCCeEEEEecCC
Confidence 1 1 2247999999999999999 89999999999999984 2222 358999999999
Q ss_pred eEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEecCCcEEEEeCCCCCcc
Q psy5892 241 ACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQL 320 (340)
Q Consensus 241 ~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~GqL 320 (340)
|+++| ++|+||+||.+..|+... |. +. ..+|++|+||.+|+++|+ +|+||+||.|.+||+
T Consensus 191 hs~al-~~G~v~~wG~n~~gqlg~------p~--~~----------~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~ 250 (282)
T 3qhy_B 191 HSLAL-KDGKVIAWGDNRYKQTTV------PT--EA----------LSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPS 250 (282)
T ss_dssp EEEEE-ETTEEEEEECCTTSTTCC------CG--GG----------GSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCG
T ss_pred EEEEE-ECCeEEEEECCCCCCCCC------Cc--cc----------CCCceEEEcCCCEEEEEE-CCEEEEecCCCCccc
Confidence 99999 899999999665555421 11 11 247999999999999999 999999999999999
Q ss_pred cCCC
Q psy5892 321 GLGT 324 (340)
Q Consensus 321 G~g~ 324 (340)
+..+
T Consensus 251 ~v~~ 254 (282)
T 3qhy_B 251 SVQS 254 (282)
T ss_dssp GGSS
T ss_pred cCCC
Confidence 9854
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.8e-44 Score=314.73 Aligned_cols=213 Identities=24% Similarity=0.369 Sum_probs=176.7
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCC
Q psy5892 27 LFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQ 106 (340)
Q Consensus 27 l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~ 106 (340)
||+||.|...++. +.|++. ..+|++|+||..|+++|+ +|+||+||.|.+||||...
T Consensus 4 v~~WG~n~~~~~~----------------~~p~~~-----~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~-- 59 (282)
T 3qhy_B 4 VVAWGGNNDWGEA----------------TVPAEA-----QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA-- 59 (282)
T ss_dssp EEEECSCCTTSTT----------------CCCGGG-----SSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG--
T ss_pred EEEeCCCCCcCcc----------------cCCccc-----cCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc--
Confidence 9999998755543 223322 448999999999999999 9999999999999998421
Q ss_pred CccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec
Q psy5892 107 EEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA 186 (340)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g 186 (340)
. . ..+|++|+||.+|+++|+ +|+||+||.|.++|||. |.++. .+|++|+||
T Consensus 60 -----------~--~--~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~~-----~~v~~ia~G 110 (282)
T 3qhy_B 60 -----------A--T--QSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEAR-----SGVDAIAAG 110 (282)
T ss_dssp -----------G--G--GSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGS-----SSEEEEEEE
T ss_pred -----------c--C--CCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------CcccC-----CCeEEEECc
Confidence 1 1 258999999999999996 99999999999999985 33332 379999999
Q ss_pred CcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEecCceEEEEcCCCcEEEEcCCCCCCCCCCc
Q psy5892 187 VDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVS 266 (340)
Q Consensus 187 ~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~g~~g~~~~~~ 266 (340)
.+|+++|+ +|+||+||.|.++||+... ....+|++|+||..|+++++ +|+||+||.+..|+..
T Consensus 111 ~~hs~al~-~G~v~~wG~n~~gqlg~~~------------~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg--- 173 (282)
T 3qhy_B 111 AWASYALK-DGKVIAWGDDSDGQTTVPA------------EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTT--- 173 (282)
T ss_dssp TTEEEEEE-TTEEEEEECCTTSTTSCCG------------GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTS---
T ss_pred CCEEEEEe-CCeEEEecCCCCCcCCCCc------------cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCC---
Confidence 99999999 9999999999999998411 11457999999999999999 8999999976666542
Q ss_pred cccCceeecccccCCcccCCCCCeEEEEccCCceEEEecCCcEEEEeCCCCCcccCCCC
Q psy5892 267 RSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTV 325 (340)
Q Consensus 267 ~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~GqLG~g~~ 325 (340)
.|..+ ..+|++|+||.+|+++| ++|+||+||.|.+||||.+..
T Consensus 174 ---~p~~~------------~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~ 216 (282)
T 3qhy_B 174 ---VPAEA------------QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE 216 (282)
T ss_dssp ---CCGGG------------GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG
T ss_pred ---Cceec------------CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc
Confidence 12211 25799999999999999 899999999999999998753
No 13
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.93 E-value=0.0059 Score=50.39 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=82.8
Q ss_pred ceeE-EeecCCeEEE-----EEecCCCCe---eEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCC-----CCC
Q psy5892 3 KITD-IACGYGFTVV-----ATKSKDKNL---KLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKH-----PST 68 (340)
Q Consensus 3 ~i~~-v~~G~~~~~~-----l~~~~dg~~---~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~-----~~~ 68 (340)
.|.+ |..|..|.++ |..+.+++. +++..--|..|..- ..++..|.-+.-.... ...
T Consensus 240 ~V~D~~rIg~n~iv~~~~~~iv~t~~~Ta~~~kv~V~~In~ggniT----------ltdV~~t~~v~nh~tg~~~~ansn 309 (400)
T 4gbf_A 240 HVIDSMSIGCTHIIMHSIDPLVAPEDYTSESSKVHVMEIIRNGNDT----------SFMVISPLWFDGRGNDVTANVNSN 309 (400)
T ss_dssp CEEEEEEECSSEEEEEEECTTSCGGGCCTTTEEEEEEEEEEETTEE----------EEEEECCCCBCTTSCBCHHHHHTS
T ss_pred eeeeeEEecccEEEEecccceeccCCCcceeeEEEEEEEecCCceE----------EEEeeceeEEecCCCCeEEEecCC
Confidence 4555 9999999887 444555441 34443333222211 2223333222211110 034
Q ss_pred CeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEE
Q psy5892 69 QIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYS 148 (340)
Q Consensus 69 ~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~ 148 (340)
.|.+|+-.-.|..++--+++|++||+++.||+-+... ..+..++.+|.++++-++.-+.+-.
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t------------------agPfla~~AG~~fTVTVn~~nyv~F 371 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH------------------AGPYIQLAAGHNFTVTVNTLNQVMF 371 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG------------------GCCEEEEEECSSEEEEEETTCCEEE
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCC------------------cchHHhHhccCCeEEEEeceeeEEE
Confidence 6888888899999999999999999999999854321 2568899999999999999999999
Q ss_pred EEeCCCCC
Q psy5892 149 CGWGADGQ 156 (340)
Q Consensus 149 wG~n~~gq 156 (340)
||+...+.
T Consensus 372 WGDSPDNS 379 (400)
T 4gbf_A 372 WGDSPDNS 379 (400)
T ss_dssp EECCTTST
T ss_pred ecCCCCcc
Confidence 99765443
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.82 E-value=0.021 Score=47.17 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=59.2
Q ss_pred CceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeC
Q psy5892 125 EKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGN 204 (340)
Q Consensus 125 ~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~ 204 (340)
..|-.|+-...|..++--+++|+.+|+++.||+-.... .-++..+.+|.++++-+..-+.+--||+
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t--------------agPfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH--------------AGPYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG--------------GCCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC--------------cchHHhHhccCCeEEEEeceeeEEEecC
Confidence 67888889999999999999999999999999854322 2378999999999999999999999998
Q ss_pred CCCCC
Q psy5892 205 SEYGQ 209 (340)
Q Consensus 205 n~~gq 209 (340)
.--..
T Consensus 375 SPDNS 379 (400)
T 4gbf_A 375 SPDNS 379 (400)
T ss_dssp CTTST
T ss_pred CCCcc
Confidence 65433
No 15
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.68 E-value=1.1 Score=40.18 Aligned_cols=201 Identities=9% Similarity=0.006 Sum_probs=112.9
Q ss_pred CCCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcE
Q psy5892 67 STQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKV 146 (340)
Q Consensus 67 ~~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v 146 (340)
...|..++......+.-..||.|..|-...... ......+.. ....|..++......+.-..+|.|
T Consensus 213 ~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~-------------~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i 278 (435)
T 1p22_A 213 CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD-------------ITLRRVLVG-HRAAVNVVDFDDKYIVSASGDRTI 278 (435)
T ss_dssp CSCEEEEECCTTEEEEEETTSCEEEEECSSSSC-------------CEEEEEECC-CSSCEEEEEEETTEEEEEETTSEE
T ss_pred CCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC-------------ceeeeEecC-CCCcEEEEEeCCCEEEEEeCCCeE
Confidence 446777777777667777888888885432110 000011111 135677777767777777889999
Q ss_pred EEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecc
Q psy5892 147 YSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQC 226 (340)
Q Consensus 147 y~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~ 226 (340)
..|-...... ...+. .....|..++......++-..+|.|..|-...... ...+.
T Consensus 279 ~vwd~~~~~~-----------~~~~~--~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~----------~~~~~-- 333 (435)
T 1p22_A 279 KVWNTSTCEF-----------VRTLN--GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC----------LRVLE-- 333 (435)
T ss_dssp EEEETTTCCE-----------EEEEE--CCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCE----------EEEEC--
T ss_pred EEEECCcCcE-----------EEEEc--CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCE----------EEEEe--
Confidence 9997432111 11111 12235777777778888888999999997543100 01111
Q ss_pred cCcccEEEEEecCceEEEEcCCCcEEEEcC--CCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEe
Q psy5892 227 KGVSRIVDVASGGSACTMLNDEGLVYSWGY--GLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAIT 304 (340)
Q Consensus 227 ~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~--g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt 304 (340)
.....|..++......+.-..+|.|..|-. +.... .......+.. +.. ....|..++....+.+...
T Consensus 334 ~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~-~~~-----h~~~v~~l~~~~~~l~s~s 402 (435)
T 1p22_A 334 GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR-----APAGTLCLRT-LVE-----HSGRVFRLQFDEFQIVSSS 402 (435)
T ss_dssp CCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTT-----SCTTTTEEEE-ECC-----CSSCCCCEEECSSCEEECC
T ss_pred CCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCcc-----ccccchheee-ccC-----CCCCeEEEEeCCCEEEEEe
Confidence 124467778776677777788999999961 11000 0000001111 111 1245667777666666677
Q ss_pred cCCcEEEEeCCCC
Q psy5892 305 NFGHLYMWGKNQY 317 (340)
Q Consensus 305 ~~g~vy~wG~n~~ 317 (340)
.+|.|..|-..+.
T Consensus 403 ~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 403 HDDTILIWDFLND 415 (435)
T ss_dssp SSSEEEEEC----
T ss_pred CCCEEEEEECCCC
Confidence 8999999976553
No 16
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.59 E-value=1.2 Score=39.95 Aligned_cols=191 Identities=9% Similarity=0.059 Sum_probs=117.6
Q ss_pred CCCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcE
Q psy5892 67 STQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKV 146 (340)
Q Consensus 67 ~~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v 146 (340)
...|..++......+.-..||.|..|-.... + ....+.. ....|..++......+.-..+|.|
T Consensus 173 ~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~-~---------------~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~i 235 (435)
T 1p22_A 173 TGSVLCLQYDERVIITGSSDSTVRVWDVNTG-E---------------MLNTLIH-HCEAVLHLRFNNGMMVTCSKDRSI 235 (435)
T ss_dssp SSCEEEEECCSSEEEEEETTSCEEEEESSSC-C---------------EEEEECC-CCSCEEEEECCTTEEEEEETTSCE
T ss_pred CCcEEEEEECCCEEEEEcCCCeEEEEECCCC-c---------------EEEEEcC-CCCcEEEEEEcCCEEEEeeCCCcE
Confidence 5578888886666666778999999965321 1 1111111 135678888777777788889999
Q ss_pred EEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecc
Q psy5892 147 YSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQC 226 (340)
Q Consensus 147 y~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~ 226 (340)
..|-......+ ...... ......|..++....+.++-..+|.|..|-..... ....+.
T Consensus 236 ~vwd~~~~~~~---------~~~~~~-~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~----------~~~~~~-- 293 (435)
T 1p22_A 236 AVWDMASPTDI---------TLRRVL-VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE----------FVRTLN-- 293 (435)
T ss_dssp EEEECSSSSCC---------EEEEEE-CCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC----------EEEEEE--
T ss_pred EEEeCCCCCCc---------eeeeEe-cCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc----------EEEEEc--
Confidence 99974332211 011111 11233677777777888888899999999754311 011111
Q ss_pred cCcccEEEEEecCceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEecC
Q psy5892 227 KGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNF 306 (340)
Q Consensus 227 ~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~ 306 (340)
.....|..+.......+.-..+|.|..|-... ...+.. +.. ....|..++....+.+.-..+
T Consensus 294 ~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~------------~~~~~~-~~~-----h~~~v~~~~~~~~~l~sg~~d 355 (435)
T 1p22_A 294 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC------------GACLRV-LEG-----HEELVRCIRFDNKRIVSGAYD 355 (435)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTT------------CCEEEE-ECC-----CSSCEEEEECCSSEEEEEETT
T ss_pred CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCC------------CCEEEE-EeC-----CcCcEEEEEecCCEEEEEeCC
Confidence 12346777777777777778899999994210 011111 111 135678888866666777889
Q ss_pred CcEEEEeC
Q psy5892 307 GHLYMWGK 314 (340)
Q Consensus 307 g~vy~wG~ 314 (340)
|.|..|-.
T Consensus 356 g~i~vwd~ 363 (435)
T 1p22_A 356 GKIKVWDL 363 (435)
T ss_dssp SCEEEEEH
T ss_pred CcEEEEEC
Confidence 99999964
No 17
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.12 E-value=2.5 Score=41.02 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=11.7
Q ss_pred CceEEEecCCcEEEEeC
Q psy5892 298 CTFGAITNFGHLYMWGK 314 (340)
Q Consensus 298 ~~~~~lt~~g~vy~wG~ 314 (340)
.|+++...+|+||.+|-
T Consensus 657 gh~~~~~~~g~i~v~GG 673 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIGG 673 (695)
T ss_dssp SCEEECC---CEEEECC
T ss_pred eeeEEEeCCCEEEEEeC
Confidence 48888888889999985
No 18
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.81 E-value=3.7 Score=39.75 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=11.0
Q ss_pred ceEEEEcCCCcEEEEc
Q psy5892 240 SACTMLNDEGLVYSWG 255 (340)
Q Consensus 240 ~~~~~lt~~g~v~~~G 255 (340)
.|+++...+|+||++|
T Consensus 657 gh~~~~~~~g~i~v~G 672 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIG 672 (695)
T ss_dssp SCEEECC---CEEEEC
T ss_pred eeeEEEeCCCEEEEEe
Confidence 4778888888999999
No 19
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=92.69 E-value=5.3 Score=35.72 Aligned_cols=193 Identities=9% Similarity=0.001 Sum_probs=115.6
Q ss_pred CCCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcE
Q psy5892 67 STQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKV 146 (340)
Q Consensus 67 ~~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v 146 (340)
...|..++......+.-..||.|..|-.... + ....+.. ....|..++......+.-..+|.|
T Consensus 199 ~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~-~---------------~~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i 261 (445)
T 2ovr_B 199 TSTVRCMHLHEKRVVSGSRDATLRVWDIETG-Q---------------CLHVLMG-HVAAVRCVQYDGRRVVSGAYDFMV 261 (445)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEESSSC-C---------------EEEEEEC-CSSCEEEEEECSSCEEEEETTSCE
T ss_pred CCcEEEEEecCCEEEEEeCCCEEEEEECCCC-c---------------EEEEEcC-CcccEEEEEECCCEEEEEcCCCEE
Confidence 4578888887777777788999999965321 1 1111111 135566776666667777889999
Q ss_pred EEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecc
Q psy5892 147 YSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQC 226 (340)
Q Consensus 147 y~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~ 226 (340)
+.|-..... ....+. .....|..+.....+.+.-..+|.|..|-...... ...+.
T Consensus 262 ~iwd~~~~~-----------~~~~~~--~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------~~~~~-- 316 (445)
T 2ovr_B 262 KVWDPETET-----------CLHTLQ--GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC----------IHTLT-- 316 (445)
T ss_dssp EEEEGGGTE-----------EEEEEC--CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE----------EEEEC--
T ss_pred EEEECCCCc-----------EeEEec--CCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE----------EEEEc--
Confidence 998743211 011111 12236777777777788888899999997543110 01111
Q ss_pred cCcccEEEEEecCceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEecC
Q psy5892 227 KGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNF 306 (340)
Q Consensus 227 ~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~ 306 (340)
.....+..+.......+.-..+|.|..|-.. .......+... . .....|..++....+.+.-+.+
T Consensus 317 ~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~---------~~~~~~~~~~~--~----~~~~~v~~~~~~~~~l~s~~~d 381 (445)
T 2ovr_B 317 GHQSLTSGMELKDNILVSGNADSTVKIWDIK---------TGQCLQTLQGP--N----KHQSAVTCLQFNKNFVITSSDD 381 (445)
T ss_dssp CCCSCEEEEEEETTEEEEEETTSCEEEEETT---------TCCEEEEECST--T----SCSSCEEEEEECSSEEEEEETT
T ss_pred CCcccEEEEEEeCCEEEEEeCCCeEEEEECC---------CCcEEEEEccC--C----CCCCCEEEEEECCCEEEEEeCC
Confidence 1134566666666777777889999999421 00011111110 0 0135678888877777777889
Q ss_pred CcEEEEeCCC
Q psy5892 307 GHLYMWGKNQ 316 (340)
Q Consensus 307 g~vy~wG~n~ 316 (340)
|.|..|-...
T Consensus 382 g~v~iwd~~~ 391 (445)
T 2ovr_B 382 GTVKLWDLKT 391 (445)
T ss_dssp SEEEEEETTT
T ss_pred CeEEEEECCC
Confidence 9999997654
No 20
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=92.49 E-value=5.6 Score=35.55 Aligned_cols=189 Identities=7% Similarity=-0.016 Sum_probs=114.7
Q ss_pred CCCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcE
Q psy5892 67 STQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKV 146 (340)
Q Consensus 67 ~~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v 146 (340)
...|..++......+.-..||.|..|-.... + ....+..- ...|..++......+.-..+|.|
T Consensus 159 ~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~---------------~~~~~~~h-~~~v~~~~~~~~~l~s~s~dg~i 221 (445)
T 2ovr_B 159 TGGVWSSQMRDNIIISGSTDRTLKVWNAETG-E---------------CIHTLYGH-TSTVRCMHLHEKRVVSGSRDATL 221 (445)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTT-E---------------EEEEECCC-SSCEEEEEEETTEEEEEETTSEE
T ss_pred CCCEEEEEecCCEEEEEeCCCeEEEEECCcC-c---------------EEEEECCC-CCcEEEEEecCCEEEEEeCCCEE
Confidence 4577777777777777788999999964321 1 11111111 35677777777777778889999
Q ss_pred EEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeec-
Q psy5892 147 YSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQ- 225 (340)
Q Consensus 147 y~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~- 225 (340)
+.|-...... ...+. .....|..++......++-..+|.|..|-... ...+..
T Consensus 222 ~~wd~~~~~~-----------~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~-------------~~~~~~~ 275 (445)
T 2ovr_B 222 RVWDIETGQC-----------LHVLM--GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET-------------ETCLHTL 275 (445)
T ss_dssp EEEESSSCCE-----------EEEEE--CCSSCEEEEEECSSCEEEEETTSCEEEEEGGG-------------TEEEEEE
T ss_pred EEEECCCCcE-----------EEEEc--CCcccEEEEEECCCEEEEEcCCCEEEEEECCC-------------CcEeEEe
Confidence 9997433111 01111 12335777777777777888899999996432 111111
Q ss_pred ccCcccEEEEEecCceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEec
Q psy5892 226 CKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITN 305 (340)
Q Consensus 226 ~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~ 305 (340)
......|..+.....+.+.-..+|.|..|-... ...+.. +.. ....+..++..+...+.-..
T Consensus 276 ~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~------------~~~~~~-~~~-----~~~~v~~~~~~~~~l~~~~~ 337 (445)
T 2ovr_B 276 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET------------GNCIHT-LTG-----HQSLTSGMELKDNILVSGNA 337 (445)
T ss_dssp CCCSSCEEEEEECSSEEEEEETTSCEEEEETTT------------CCEEEE-ECC-----CCSCEEEEEEETTEEEEEET
T ss_pred cCCCCceEEEEECCCEEEEEeCCCeEEEEECCC------------CCEEEE-EcC-----CcccEEEEEEeCCEEEEEeC
Confidence 112346777777667777778899999994210 011111 011 12456667766666667778
Q ss_pred CCcEEEEeCCC
Q psy5892 306 FGHLYMWGKNQ 316 (340)
Q Consensus 306 ~g~vy~wG~n~ 316 (340)
+|.|..|-...
T Consensus 338 dg~i~vwd~~~ 348 (445)
T 2ovr_B 338 DSTVKIWDIKT 348 (445)
T ss_dssp TSCEEEEETTT
T ss_pred CCeEEEEECCC
Confidence 89999997644
No 21
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=86.23 E-value=15 Score=31.35 Aligned_cols=201 Identities=10% Similarity=0.002 Sum_probs=103.1
Q ss_pred CCCeEEEEeC----CCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc----CCeeE
Q psy5892 67 STQIKHLATG----RAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG----QDHTL 138 (340)
Q Consensus 67 ~~~i~~i~~g----~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g----~~~~~ 138 (340)
...|..++.. ....+.-..||.|..|-.... + ......+.. ....|..++-. ....+
T Consensus 55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~-------------~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~ 119 (379)
T 3jrp_A 55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-R-------------WSQIAVHAV-HSASVNSVQWAPHEYGPLLL 119 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT-E-------------EEEEEEECC-CSSCEEEEEECCGGGCSEEE
T ss_pred CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC-c-------------eeEeeeecC-CCcceEEEEeCCCCCCCEEE
Confidence 4578888765 455666678899999864321 0 001111111 13556666644 34566
Q ss_pred EEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec---------------CcEEEEEeCCCCEEEEe
Q psy5892 139 FLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA---------------VDCVLAVSDKGDVFGWG 203 (340)
Q Consensus 139 ~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g---------------~~~~~~l~~~g~v~~wG 203 (340)
+...+|.|..|-....... .+..+. .....|..++.. ....++-..+|.|+.|-
T Consensus 120 ~~~~d~~i~v~d~~~~~~~---------~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 188 (379)
T 3jrp_A 120 VASSDGKVSVVEFKENGTT---------SPIIID--AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 188 (379)
T ss_dssp EEETTSEEEEEECCTTSCC---------CEEEEE--CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEE
T ss_pred EecCCCcEEEEecCCCCce---------eeEEec--CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEE
Confidence 6678899999975432211 011111 112245555544 35566677899999995
Q ss_pred CCCCCCCCCCCccccCceEee-cccCcccEEEEEecCc-----eEEEEcCCCcEEEEcCCCCCCCCCCccccCceeeccc
Q psy5892 204 NSEYGQISESEMQISTPRVLS-QCKGVSRIVDVASGGS-----ACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPST 277 (340)
Q Consensus 204 ~n~~gqlg~~~~~~~~p~~i~-~~~~~~~i~~i~~g~~-----~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~ 277 (340)
..... .....+. .......|..++...+ ..+....+|.|..|-... ...+......
T Consensus 189 ~~~~~---------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~ 250 (379)
T 3jrp_A 189 YNSDA---------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN---------EQGPWKKTLL 250 (379)
T ss_dssp EETTT---------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS---------TTSCCEEEES
T ss_pred ecCCC---------cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC---------CCccceeeee
Confidence 43210 0001111 1112346777776543 455557789999995211 0001111110
Q ss_pred ccCCcccCCCCCeEEEEccC--CceEEEecCCcEEEEeCC
Q psy5892 278 LFGQHQFNPKSKVESLIAGP--CTFGAITNFGHLYMWGKN 315 (340)
Q Consensus 278 ~~~~~~~~~~~~i~~i~~G~--~~~~~lt~~g~vy~wG~n 315 (340)
... .....|..++.-. ...++...+|.|+.|-.+
T Consensus 251 ~~~----~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 251 KEE----KFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SSS----CCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred ccc----cCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 000 0124566666533 344555788999999755
No 22
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=84.62 E-value=28 Score=33.12 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=16.8
Q ss_pred CCceEE-EecCCcEEEEeCCCCC
Q psy5892 297 PCTFGA-ITNFGHLYMWGKNQYG 318 (340)
Q Consensus 297 ~~~~~~-lt~~g~vy~wG~n~~G 318 (340)
.+|+++ +..+|+||+.|.+.++
T Consensus 511 ~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 511 VYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp CTTEEEEECTTSCEEEEECCCCT
T ss_pred ccccHhhcCCCcEEEecCCCCCC
Confidence 467654 5689999999987655
No 23
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.59 E-value=21 Score=30.86 Aligned_cols=218 Identities=11% Similarity=0.064 Sum_probs=112.8
Q ss_pred EEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCC-----CeE
Q psy5892 6 DIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGR-----AHT 80 (340)
Q Consensus 6 ~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~-----~~~ 80 (340)
.+.....|.-+++-|+.|+ +|..-...--..+..... ......+.+.. +++|+.+.+.. .+.
T Consensus 46 ~~~~~~t~d~ll~fT~~Gr--~y~~~~~~lp~~~r~~~G--------~~i~~~l~l~~---~e~i~~~~~~~~~~~e~~~ 112 (327)
T 3uc1_A 46 HFFVCSTHDLILFFTTQGR--VYRAKAYDLPEASRTARG--------QHVANLLAFQP---EERIAQVIQIRGYTDAPYL 112 (327)
T ss_dssp EEEEEETTSEEEEEETTSE--EEEEEGGGSCBCCSSSCC--------EEHHHHTTCCT---TCCEEEEEEESSTTSSSEE
T ss_pred EEEEeCCCCEEEEEeCCCe--EEEEEHHHCcCCCccCCC--------EEHHHccCCCC---CCEEEEEEEeccCCCCCEE
Confidence 3333333333333389999 998864433222221111 00112244444 78899887765 468
Q ss_pred EEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEE--EccCCeeEEEEcCCcEEEEEeC--CCCC
Q psy5892 81 IVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDA--VCGQDHTLFLTESGKVYSCGWG--ADGQ 156 (340)
Q Consensus 81 ~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i--~~g~~~~~~lt~~g~vy~wG~n--~~gq 156 (340)
+++|++|.+.-.-...+-.... .-.....+. ++..++.+ +.+.++.+++|++|++|.+--. .--.
T Consensus 113 v~~T~~G~iKr~~l~~~~~~~r---------~G~~~i~lk--e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~ 181 (327)
T 3uc1_A 113 VLATRNGLVKKSKLTDFDSNRS---------GGIVAVNLR--DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRP 181 (327)
T ss_dssp EEEETTSEEEEEEGGGGCCCCS---------SCEESCBCC--TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCC
T ss_pred EEEcCCCEEEEeEHHHhhcccc---------CceEEEEEC--CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCc
Confidence 8899999888776443311000 000011111 13444433 4566789999999999998866 4443
Q ss_pred CCCCCCCCeeeceeecccccCccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEE
Q psy5892 157 TGLGHLNNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVD 234 (340)
Q Consensus 157 lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~ 234 (340)
+|...... + .+. ...++.|+.+..- ..+.+++|++|.+.-.-...+-.......... .+........++.
T Consensus 182 ~gr~a~Gv---~-~i~-L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~---~~~l~~~~d~lv~ 253 (327)
T 3uc1_A 182 MGRATSGV---Q-GMR-FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL---TVMYDRRRGRLVG 253 (327)
T ss_dssp CCTTSBCE---E-SSC-CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE---SSCCCTTTCSEEE
T ss_pred CCcCCCCe---e-eec-CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE---EEEecCCCCeEEE
Confidence 44322211 1 121 2245567776654 34678888998777665443322111000000 0111111223443
Q ss_pred EE--ecCceEEEEcCCCcEEEEc
Q psy5892 235 VA--SGGSACTMLNDEGLVYSWG 255 (340)
Q Consensus 235 i~--~g~~~~~~lt~~g~v~~~G 255 (340)
+. .+.+..+++|++|++.-+-
T Consensus 254 ~~~~~~~~~i~l~T~~G~~ir~~ 276 (327)
T 3uc1_A 254 ALIVDDDSELYAVTSGGGVIRTA 276 (327)
T ss_dssp EEEECTTCEEEEEEGGGCEEEEE
T ss_pred EEEeCCCccEEEEcCCCeEEEEe
Confidence 33 3567788999999988775
No 24
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=82.62 E-value=36 Score=32.85 Aligned_cols=190 Identities=12% Similarity=0.040 Sum_probs=92.9
Q ss_pred CeEEEEeC--CCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc--CCeeEEEEcCC
Q psy5892 69 QIKHLATG--RAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG--QDHTLFLTESG 144 (340)
Q Consensus 69 ~i~~i~~g--~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~~~~lt~~g 144 (340)
.|..++.. ....+.-..+|.|+.|-..... ....+... ...|..++-. ....+.-..+|
T Consensus 57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----------------~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg 119 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE----------------KVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDL 119 (814)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEETTTCC----------------EEEEEECC-SSCEEEEEECSSSSEEEEEETTS
T ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc----------------EEEEEecC-CCCEEEEEEeCCCCEEEEEcCCC
Confidence 45555443 3445556678889888654321 11111111 2446555543 33455556788
Q ss_pred cEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecC---cEEEEEeCCCCEEEEeCCCCCCCCCCCccccCce
Q psy5892 145 KVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAV---DCVLAVSDKGDVFGWGNSEYGQISESEMQISTPR 221 (340)
Q Consensus 145 ~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~---~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~ 221 (340)
.|..|-..... .....+. .....|..++... ...+....+|.|..|-..... ...
T Consensus 120 ~i~vw~~~~~~----------~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~----------~~~ 177 (814)
T 3mkq_A 120 TVKLWNWENNW----------ALEQTFE--GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----------PNF 177 (814)
T ss_dssp EEEEEEGGGTS----------EEEEEEE--CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS----------CSE
T ss_pred EEEEEECCCCc----------eEEEEEc--CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------cee
Confidence 99998743211 1111111 1123566666543 455566788999999754211 111
Q ss_pred EeecccCcccEEEEEe----cCceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccC
Q psy5892 222 VLSQCKGVSRIVDVAS----GGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGP 297 (340)
Q Consensus 222 ~i~~~~~~~~i~~i~~----g~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~ 297 (340)
.+.. .....+..++. .....++-..+|.|..|-.. .......+.. ....|..++...
T Consensus 178 ~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~---------~~~~~~~~~~---------~~~~v~~~~~~~ 238 (814)
T 3mkq_A 178 TLTT-GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ---------TKSCVATLEG---------HMSNVSFAVFHP 238 (814)
T ss_dssp EEEC-CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT---------TTEEEEEEEC---------CSSCEEEEEECS
T ss_pred EEec-CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC---------CCcEEEEEcC---------CCCCEEEEEEcC
Confidence 1111 11123444443 33455566778999999421 0011111111 123455555443
Q ss_pred C--ceEEEecCCcEEEEeCCC
Q psy5892 298 C--TFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 298 ~--~~~~lt~~g~vy~wG~n~ 316 (340)
. ..+..+.+|.|+.|-...
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEeCCCeEEEEECCC
Confidence 3 344455678888886544
No 25
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=82.25 E-value=48 Score=34.01 Aligned_cols=195 Identities=9% Similarity=0.096 Sum_probs=89.7
Q ss_pred CCCeEEEEeCCC-eEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEE--EccCCeeEEEEcC
Q psy5892 67 STQIKHLATGRA-HTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDA--VCGQDHTLFLTES 143 (340)
Q Consensus 67 ~~~i~~i~~g~~-~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i--~~g~~~~~~lt~~ 143 (340)
...|..++.... ..+....+|.++.|-.... ++ ...+..- ...|..+ +......+.-..+
T Consensus 1044 ~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~---------------~~~~~~~-~~~v~~~~~s~d~~~l~s~s~d 1106 (1249)
T 3sfz_A 1044 QETVKDFRLLQDSRLLSWSFDGTVKVWNVITG-RI---------------ERDFTCH-QGTVLSCAISSDATKFSSTSAD 1106 (1249)
T ss_dssp SSCEEEEEECSSSEEEEEESSSEEEEEETTTT-CC---------------CEEEECC-SSCCCCEEECSSSSSCEEECCS
T ss_pred CCcEEEEEEcCCCcEEEEECCCcEEEEECCCC-ce---------------eEEEccc-CCcEEEEEECCCCCEEEEEcCC
Confidence 445666655443 3445567888888865321 10 0011100 1223222 2333344555667
Q ss_pred CcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecC--cEEEEEeCCCCEEEEeCCCCCCCCCCCccccCce
Q psy5892 144 GKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAV--DCVLAVSDKGDVFGWGNSEYGQISESEMQISTPR 221 (340)
Q Consensus 144 g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~ 221 (340)
|.|+.|-......+. .+. .....|..++... ...+.-..+|.|+.|-......+... .|.
T Consensus 1107 ~~v~iwd~~~~~~~~-----------~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~-----~~~ 1168 (1249)
T 3sfz_A 1107 KTAKIWSFDLLSPLH-----------ELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC-----API 1168 (1249)
T ss_dssp SCCCEECSSSSSCSB-----------CCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCC-----CCC
T ss_pred CcEEEEECCCcceee-----------eec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEe-----ccc
Confidence 888887643322111 010 1122455555543 34555567888888865432211110 010
Q ss_pred Eee--cccCcccEEEEEecCceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeE--EEEccC
Q psy5892 222 VLS--QCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVE--SLIAGP 297 (340)
Q Consensus 222 ~i~--~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~--~i~~G~ 297 (340)
... .......|..++...+...+++.+|.|..|-... + ..+.. +.. ....|. .++...
T Consensus 1169 ~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~---g---------~~~~~-~~~-----~~~~i~~~~~s~dg 1230 (1249)
T 3sfz_A 1169 SVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVAT---G---------DSSQT-FYT-----NGTNLKKIHVSPDF 1230 (1249)
T ss_dssp C-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSS---C---------BCCCC-CCC-----SSCCCCCCEECSSS
T ss_pred cccccccccCceEEEEEECCCCCEEEECCCeEEEEECCC---C---------ceeee-eec-----cCCcccEEEECCCC
Confidence 000 0011345666666655544455568888884210 0 00100 000 012233 344444
Q ss_pred CceEEEecCCcEEEEeC
Q psy5892 298 CTFGAITNFGHLYMWGK 314 (340)
Q Consensus 298 ~~~~~lt~~g~vy~wG~ 314 (340)
...++.+.+|.|+.|--
T Consensus 1231 ~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1231 RTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp CCEEEECTTCCEEEECC
T ss_pred CEEEEecCCcEEEEEee
Confidence 56667788899999853
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=82.22 E-value=21 Score=29.79 Aligned_cols=194 Identities=8% Similarity=0.032 Sum_probs=94.4
Q ss_pred cCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCe-EEEEeCCCc
Q psy5892 10 GYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAH-TIVITDNEG 88 (340)
Q Consensus 10 G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~-~~~lt~~g~ 88 (340)
+.-.++.+ ++||+ ++..+......+....... ......... ...|..++..... .++...+|.
T Consensus 10 ~~v~~~~~--s~dg~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~h-----~~~v~~~~~~~~~~~l~~~~dg~ 73 (337)
T 1gxr_A 10 KPAYSFHV--TADGQ--MQPVPFPPDALIGPGIPRH-------ARQINTLNH-----GEVVCAVTISNPTRHVYTGGKGC 73 (337)
T ss_dssp EECCEEEE--CSSSC--EEECCCCTTSSSSTTCCSE-------EEEEEEECC-----SSCCCEEEECSSSSEEEEECBSE
T ss_pred CceeEEEE--CCCCC--EEEeecCCCcEeccccCCc-------cccceeccC-----CCceEEEEEecCCcEEEEcCCCe
Confidence 33445555 79999 8877765444333222110 011111111 4456666654432 333334788
Q ss_pred EEEEecCCCCCccCCCCCCccccCCceeccccc-cCCCceEEEEcc--CCeeEEEEcCCcEEEEEeCCCCCCCCCCCCCe
Q psy5892 89 AFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIAD-LEGEKIMDAVCG--QDHTLFLTESGKVYSCGWGADGQTGLGHLNNQ 165 (340)
Q Consensus 89 l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~ 165 (340)
|..|-....... .....+.. -....|..++-. ....++-..+|.|+.|-..... .
T Consensus 74 i~iw~~~~~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--------~- 131 (337)
T 1gxr_A 74 VKVWDISHPGNK-------------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--------P- 131 (337)
T ss_dssp EEEEETTSTTCC-------------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------
T ss_pred EEEEECCCCCce-------------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC--------c-
Confidence 888865432110 00111110 013456555543 3345555678899998643211 0
Q ss_pred eeceeecccccCccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEecC--ce
Q psy5892 166 ETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGG--SA 241 (340)
Q Consensus 166 ~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g~--~~ 241 (340)
.....+. .....|..++.. ..+.++...+|.|+.|-..... ....+. .....|..++... ..
T Consensus 132 ~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~----------~~~~~~--~~~~~i~~~~~~~~~~~ 197 (337)
T 1gxr_A 132 RIKAELT--SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT----------LVRQFQ--GHTDGASCIDISNDGTK 197 (337)
T ss_dssp EEEEEEE--CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----------EEEEEC--CCSSCEEEEEECTTSSE
T ss_pred ceeeecc--cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc----------eeeeee--cccCceEEEEECCCCCE
Confidence 0011111 122346555553 4456667788999999654210 011111 1234577766643 34
Q ss_pred EEEEcCCCcEEEEc
Q psy5892 242 CTMLNDEGLVYSWG 255 (340)
Q Consensus 242 ~~~lt~~g~v~~~G 255 (340)
.+....+|.|+.|-
T Consensus 198 l~~~~~dg~i~~~d 211 (337)
T 1gxr_A 198 LWTGGLDNTVRSWD 211 (337)
T ss_dssp EEEEETTSEEEEEE
T ss_pred EEEEecCCcEEEEE
Confidence 55567889999994
No 27
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=82.17 E-value=20 Score=29.55 Aligned_cols=188 Identities=7% Similarity=-0.041 Sum_probs=96.5
Q ss_pred CeEEEEeC--CCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcE
Q psy5892 69 QIKHLATG--RAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKV 146 (340)
Q Consensus 69 ~i~~i~~g--~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v 146 (340)
.|..++.. ....+.-..+|.+..|-...... ......+.. ....|..++......+.-..+|.|
T Consensus 61 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-------------~~~~~~~~~-~~~~i~~~~~~~~~l~~~~~d~~i 126 (313)
T 3odt_A 61 FLNSVCYDSEKELLLFGGKDTMINGVPLFATSG-------------EDPLYTLIG-HQGNVCSLSFQDGVVISGSWDKTA 126 (313)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTCCTT-------------SCC-CEECC-CSSCEEEEEEETTEEEEEETTSEE
T ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEeeecCC-------------CCcccchhh-cccCEEEEEecCCEEEEEeCCCCE
Confidence 45554443 34455556778887775432210 001111111 135677777767777777889999
Q ss_pred EEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEe---cCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEe
Q psy5892 147 YSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSS---AVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVL 223 (340)
Q Consensus 147 y~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~---g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i 223 (340)
+.|- .+ .....+. .....+..+.. ..+..++...+|.|..|-... +...
T Consensus 127 ~~~d---~~----------~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------------~~~~ 178 (313)
T 3odt_A 127 KVWK---EG----------SLVYNLQ--AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-------------VIKT 178 (313)
T ss_dssp EEEE---TT----------EEEEEEE--CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-------------EEEE
T ss_pred EEEc---CC----------cEEEecc--cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-------------eEEE
Confidence 9995 11 0011111 12234555544 456677778899999995110 1111
Q ss_pred ecccCcccEEEEEecCc-eEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCC-ceE
Q psy5892 224 SQCKGVSRIVDVASGGS-ACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPC-TFG 301 (340)
Q Consensus 224 ~~~~~~~~i~~i~~g~~-~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~-~~~ 301 (340)
........|..++...+ ..++...+|.|+.|-... ......+.. ....|..++.-.. ..+
T Consensus 179 ~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~---------~~~~~~~~~---------~~~~i~~~~~~~~~~l~ 240 (313)
T 3odt_A 179 FSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHT---------GDVLRTYEG---------HESFVYCIKLLPNGDIV 240 (313)
T ss_dssp ECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTT---------CCEEEEEEC---------CSSCEEEEEECTTSCEE
T ss_pred EeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCc---------hhhhhhhhc---------CCceEEEEEEecCCCEE
Confidence 11112345666555322 255567889999994210 000011110 1245666665433 455
Q ss_pred EEecCCcEEEEeCCC
Q psy5892 302 AITNFGHLYMWGKNQ 316 (340)
Q Consensus 302 ~lt~~g~vy~wG~n~ 316 (340)
+...+|.|+.|-...
T Consensus 241 ~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 241 SCGEDRTVRIWSKEN 255 (313)
T ss_dssp EEETTSEEEEECTTT
T ss_pred EEecCCEEEEEECCC
Confidence 566788888886543
No 28
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=81.06 E-value=24 Score=29.79 Aligned_cols=220 Identities=9% Similarity=0.093 Sum_probs=104.2
Q ss_pred CCCeEEEEeCC---CeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceecccc--ccCCCceEEEEcc--CCeeEE
Q psy5892 67 STQIKHLATGR---AHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIA--DLEGEKIMDAVCG--QDHTLF 139 (340)
Q Consensus 67 ~~~i~~i~~g~---~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~g--~~~~~~ 139 (340)
...|..++... ...+.-..||.|+.|-.... + ....+. .-....|..++.. ....+.
T Consensus 115 ~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 178 (366)
T 3k26_A 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-T---------------LVAIFGGVEGHRDEVLSADYDLLGEKIMS 178 (366)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-E---------------EEEEECSTTSCSSCEEEEEECTTSSEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-e---------------EEEEecccccccCceeEEEECCCCCEEEE
Confidence 45777777643 45555668899999965321 1 111111 0113567666643 345556
Q ss_pred EEcCCcEEEEEeCCCCCCC-------CCC--------CCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeC
Q psy5892 140 LTESGKVYSCGWGADGQTG-------LGH--------LNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGN 204 (340)
Q Consensus 140 lt~~g~vy~wG~n~~gqlg-------~~~--------~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~ 204 (340)
...+|.|+.|-......+. ... ......|...........|..++...+..+....+|.|..|-.
T Consensus 179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~ 258 (366)
T 3k26_A 179 CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKP 258 (366)
T ss_dssp EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEE
T ss_pred ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeC
Confidence 6778999999744321100 000 0000000000001123356666665777777888999999976
Q ss_pred CCCCCCCC-CCccccCceEeecc-cCcccEEEEEec----CceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccc
Q psy5892 205 SEYGQISE-SEMQISTPRVLSQC-KGVSRIVDVASG----GSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTL 278 (340)
Q Consensus 205 n~~gqlg~-~~~~~~~p~~i~~~-~~~~~i~~i~~g----~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~ 278 (340)
....+.-. ..........+..+ .....|..++.. ....++-..+|.|+.|-... .......+.. +
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~-~ 329 (366)
T 3k26_A 259 GKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV--------EDPHKAKCTT-L 329 (366)
T ss_dssp SSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS--------SSGGGCEEEE-E
T ss_pred CCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC--------CCCccccceE-E
Confidence 54322111 01111111111110 111223333332 34555567889999995210 0000001101 0
Q ss_pred cCCcccCCCCCeEEEEccC--CceEEEecCCcEEEEeC
Q psy5892 279 FGQHQFNPKSKVESLIAGP--CTFGAITNFGHLYMWGK 314 (340)
Q Consensus 279 ~~~~~~~~~~~i~~i~~G~--~~~~~lt~~g~vy~wG~ 314 (340)
... .....|..++... ...+.-..+|.|+.|-.
T Consensus 330 ~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 330 THH---KCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp CCT---TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ccc---ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 000 0025677766543 34555678899999854
No 29
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=79.66 E-value=46 Score=32.19 Aligned_cols=154 Identities=12% Similarity=0.045 Sum_probs=82.9
Q ss_pred CCCeEEEEeC----CCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc----CCeeE
Q psy5892 67 STQIKHLATG----RAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG----QDHTL 138 (340)
Q Consensus 67 ~~~i~~i~~g----~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g----~~~~~ 138 (340)
...|..++.. ....+.-..||.|+.|-.... + ......+.. ....|..++.. ....+
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-~-------------~~~~~~~~~-h~~~V~~v~~sp~~~~~~l~ 117 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-R-------------WSQIAVHAV-HSASVNSVQWAPHEYGPLLL 117 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-E-------------EEEEEEECC-CSSCEEEEEECCGGGCSEEE
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-c-------------ccccccccC-CCCCeEEEEECCCCCCCEEE
Confidence 4578888765 345566678899999964321 0 001111111 13556666654 34566
Q ss_pred EEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec---------------CcEEEEEeCCCCEEEEe
Q psy5892 139 FLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA---------------VDCVLAVSDKGDVFGWG 203 (340)
Q Consensus 139 ~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g---------------~~~~~~l~~~g~v~~wG 203 (340)
.-+.+|.|+.|-.......- ...+. .....|..++.. ....+.-..+|.|..|-
T Consensus 118 sgs~dg~I~vwdl~~~~~~~---------~~~~~--~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd 186 (753)
T 3jro_A 118 VASSDGKVSVVEFKENGTTS---------PIIID--AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186 (753)
T ss_dssp EEETTSEEEEEECCSSSCCC---------CEEEE--CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEE
T ss_pred EEeCCCcEEEEEeecCCCcc---------eeEee--cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEe
Confidence 67888999999754322110 01111 112245555543 34566677889999995
Q ss_pred CCCCCCCCCCCccccCceEee-cccCcccEEEEEecCc-----eEEEEcCCCcEEEEc
Q psy5892 204 NSEYGQISESEMQISTPRVLS-QCKGVSRIVDVASGGS-----ACTMLNDEGLVYSWG 255 (340)
Q Consensus 204 ~n~~gqlg~~~~~~~~p~~i~-~~~~~~~i~~i~~g~~-----~~~~lt~~g~v~~~G 255 (340)
.....+ ....+. .......|..++...+ ..+.-..+|.|..|-
T Consensus 187 ~~~~~~---------~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 187 YNSDAQ---------TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp EETTTT---------EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccCCcc---------cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 432100 001111 1112456777777644 455557789999995
No 30
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=78.55 E-value=29 Score=29.24 Aligned_cols=147 Identities=10% Similarity=0.019 Sum_probs=82.9
Q ss_pred CCCeEEEEeCCC-----eEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc--CCeeEE
Q psy5892 67 STQIKHLATGRA-----HTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG--QDHTLF 139 (340)
Q Consensus 67 ~~~i~~i~~g~~-----~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~~~~ 139 (340)
...|..|+.... ..+.-..||.|..|-....++. ....+... ...|..++-. ....+.
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~--------------~~~~~~~h-~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT--------------IPKAQQMH-TGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE--------------EEEEEEEC-SSCEEEEEECTTSSEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce--------------eEEEeccc-cCCEEEEEECcCCCEEEE
Confidence 668888888875 3333457899999875432211 11111111 3456666543 335556
Q ss_pred EEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEe--cC--cEEEEEeCCCCEEEEeCCCCCCCCCCCc
Q psy5892 140 LTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSS--AV--DCVLAVSDKGDVFGWGNSEYGQISESEM 215 (340)
Q Consensus 140 lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~--g~--~~~~~l~~~g~v~~wG~n~~gqlg~~~~ 215 (340)
-..+|.|..|-..... ..... .....|..++. .. .+.+....+|.|+.|-.....
T Consensus 104 ~~~dg~v~iwd~~~~~------------~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------- 162 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQ------------AIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN------- 162 (368)
T ss_dssp EETTSEEEEEETTTTE------------EEEEE--ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-------
T ss_pred EcCCCcEEEEEcCCCC------------ceeec--cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-------
Confidence 6778999999743211 11111 12335666664 32 345556678999999644311
Q ss_pred cccCceEeecccCcccEEEEEecCceEEEEcCCCcEEEEc
Q psy5892 216 QISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWG 255 (340)
Q Consensus 216 ~~~~p~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G 255 (340)
.-..+.. ...+..+..-....++.+.++.+..|-
T Consensus 163 ---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (368)
T 3mmy_A 163 ---PMMVLQL---PERCYCADVIYPMAVVATAERGLIVYQ 196 (368)
T ss_dssp ---CSEEEEC---SSCEEEEEEETTEEEEEEGGGCEEEEE
T ss_pred ---EEEEEec---CCCceEEEecCCeeEEEeCCCcEEEEE
Confidence 1111222 335666666666777888889999885
No 31
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=78.48 E-value=28 Score=29.05 Aligned_cols=26 Identities=19% Similarity=0.075 Sum_probs=16.4
Q ss_pred CCeEEEEccCC--ceEEEecCCcEEEEe
Q psy5892 288 SKVESLIAGPC--TFGAITNFGHLYMWG 313 (340)
Q Consensus 288 ~~i~~i~~G~~--~~~~lt~~g~vy~wG 313 (340)
..|..++...+ ..+.-..||.|+.|=
T Consensus 307 ~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 307 PQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 45667665443 334456788888884
No 32
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=77.70 E-value=17 Score=34.65 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=31.7
Q ss_pred EEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEE----ecCceEEEEcCCCcEEEEc
Q psy5892 189 CVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVA----SGGSACTMLNDEGLVYSWG 255 (340)
Q Consensus 189 ~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~----~g~~~~~~lt~~g~v~~~G 255 (340)
+++++..+|+||++|-.....+ .+ +.+.......+. ....|++++..+|+||++|
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v-----------~~-yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~G 304 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKT-----------SL-YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIG 304 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCE-----------EE-EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEEC
T ss_pred ccccCCCCCCEEEeCCCCCCce-----------EE-ecCcCCceeECCCCCccccccceEEecCCeEEEEe
Confidence 3567788999999984321100 00 001111222221 2356788888899999998
No 33
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=77.11 E-value=29 Score=28.48 Aligned_cols=187 Identities=11% Similarity=0.032 Sum_probs=102.5
Q ss_pred CCCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEc---cCCeeEEEEcC
Q psy5892 67 STQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVC---GQDHTLFLTES 143 (340)
Q Consensus 67 ~~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~---g~~~~~~lt~~ 143 (340)
...|..++......+.-..+|.|..|- .++ ....+... ...+..+.. .....+.-..+
T Consensus 104 ~~~i~~~~~~~~~l~~~~~d~~i~~~d---~~~---------------~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 104 QGNVCSLSFQDGVVISGSWDKTAKVWK---EGS---------------LVYNLQAH-NASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEE---TTE---------------EEEEEECC-SSCEEEEEEEETTTTEEEEEETT
T ss_pred ccCEEEEEecCCEEEEEeCCCCEEEEc---CCc---------------EEEecccC-CCceeEEEEccCCCCEEEEEECC
Confidence 557888888777777778899999995 111 11111111 244544443 45566777888
Q ss_pred CcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCc-EEEEEeCCCCEEEEeCCCCCCCCCCCccccCceE
Q psy5892 144 GKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVD-CVLAVSDKGDVFGWGNSEYGQISESEMQISTPRV 222 (340)
Q Consensus 144 g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~-~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~ 222 (340)
|.|+.|-.. .....+. ......|..++...+ ..++...+|.|+.|-..... ....
T Consensus 165 ~~i~i~d~~-------------~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~----------~~~~ 220 (313)
T 3odt_A 165 KTIKLWQND-------------KVIKTFS-GIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGD----------VLRT 220 (313)
T ss_dssp SCEEEEETT-------------EEEEEEC-SSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCC----------EEEE
T ss_pred CCEEEEecC-------------ceEEEEe-ccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchh----------hhhh
Confidence 999998510 0011111 112234555554322 35567788999999754311 0011
Q ss_pred eecccCcccEEEEEecCc-eEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCC-ce
Q psy5892 223 LSQCKGVSRIVDVASGGS-ACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPC-TF 300 (340)
Q Consensus 223 i~~~~~~~~i~~i~~g~~-~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~-~~ 300 (340)
+. .....|..++...+ ..++...+|.|+.|-.. .......+.. ....|..++.-.. ..
T Consensus 221 ~~--~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~---------~~~~~~~~~~---------~~~~i~~~~~~~~~~~ 280 (313)
T 3odt_A 221 YE--GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKE---------NGSLKQVITL---------PAISIWSVDCMSNGDI 280 (313)
T ss_dssp EE--CCSSCEEEEEECTTSCEEEEETTSEEEEECTT---------TCCEEEEEEC---------SSSCEEEEEECTTSCE
T ss_pred hh--cCCceEEEEEEecCCCEEEEecCCEEEEEECC---------CCceeEEEec---------cCceEEEEEEccCCCE
Confidence 11 12346777776543 45666789999999410 1111111111 1246777765433 35
Q ss_pred EEEecCCcEEEEeCCC
Q psy5892 301 GAITNFGHLYMWGKNQ 316 (340)
Q Consensus 301 ~~lt~~g~vy~wG~n~ 316 (340)
++...+|.|+.|-.+.
T Consensus 281 ~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 281 IVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEEETTSCEEEEESCG
T ss_pred EEEeCCCcEEEEeCCC
Confidence 6678899999997654
No 34
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=76.26 E-value=34 Score=28.80 Aligned_cols=150 Identities=9% Similarity=-0.024 Sum_probs=81.9
Q ss_pred CCceEEEEccCC-----eeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec--CcEEEEEeCC
Q psy5892 124 GEKIMDAVCGQD-----HTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDK 196 (340)
Q Consensus 124 ~~~i~~i~~g~~-----~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~ 196 (340)
...|..++-..+ ..+.-..+|.|..|-....++ .....+. .....|..++.. ..+.+....+
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQ--MHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------EEEEEEE--ECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------eeEEEec--cccCCEEEEEECcCCCEEEEEcCC
Confidence 467877776554 444556789999998654221 1111111 122356666654 3456667789
Q ss_pred CCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEe--cCc--eEEEEcCCCcEEEEcCCCCCCCCCCccccCce
Q psy5892 197 GDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVAS--GGS--ACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPT 272 (340)
Q Consensus 197 g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~--g~~--~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~ 272 (340)
|.|..|-.... ..+........|..++. ..+ ..+.-..+|.|+.|-.. ....-.
T Consensus 108 g~v~iwd~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~---------~~~~~~ 165 (368)
T 3mmy_A 108 KTAKMWDLSSN-------------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR---------SSNPMM 165 (368)
T ss_dssp SEEEEEETTTT-------------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS---------CSSCSE
T ss_pred CcEEEEEcCCC-------------CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC---------CCcEEE
Confidence 99999965421 11111122456777775 333 34555678999999421 000011
Q ss_pred eecccccCCcccCCCCCeEEEEccCCceEEEecCCcEEEEeCCC
Q psy5892 273 LIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 273 ~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~ 316 (340)
.+. .+..+..+..-....++.+.++.+..|-...
T Consensus 166 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 166 VLQ----------LPERCYCADVIYPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp EEE----------CSSCEEEEEEETTEEEEEEGGGCEEEEECSS
T ss_pred EEe----------cCCCceEEEecCCeeEEEeCCCcEEEEEecc
Confidence 111 1234555555556666677777777776543
No 35
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=75.62 E-value=37 Score=28.98 Aligned_cols=212 Identities=15% Similarity=0.150 Sum_probs=108.8
Q ss_pred cCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeC-----CCeEEEEe
Q psy5892 10 GYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATG-----RAHTIVIT 84 (340)
Q Consensus 10 G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g-----~~~~~~lt 84 (340)
...+.+++ |+.|. +|.+-...--..|...... .....+.+.. +++|..+... ..+.+++|
T Consensus 57 ~~~~ll~~--T~~G~--~~~~~~~~ip~~~r~~~G~--------~i~~~l~l~~---~e~i~~~~~~~~~~~~~~ll~~T 121 (312)
T 1suu_A 57 THDYLFMI--SNEGK--LYLINAYEIKDSSRASKGQ--------NISELINLGD---QEEILTIKNSKDLTDDAYLLLTT 121 (312)
T ss_dssp TTCEEEEE--ETTSE--EEEEEGGGSCC-------C--------BGGGTSCCCT---TCCEEEEEEESCCCTTCEEEEEE
T ss_pred CCCEEEEE--ECCCe--EEEEEHHHCCCCCccCCCc--------ChhhccCCCC---CCEEEEEEEeccCCCCCEEEEEe
Confidence 33444444 89998 8888654322222221110 0112233333 6788888765 35688899
Q ss_pred CCCcEEEEecCCCCCc-cCCCCCCccccCCceeccccccCCCceEEEE--ccCCeeEEEEcCCcEEEEEeCCCCCCCCCC
Q psy5892 85 DNEGAFTFGNNSFGQC-GRGIVQEEDYQGKWFCHNIADLEGEKIMDAV--CGQDHTLFLTESGKVYSCGWGADGQTGLGH 161 (340)
Q Consensus 85 ~~g~l~~~G~n~~gql-g~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~--~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~ 161 (340)
++|.++..-...+-.. +.+ .....+.. +..++.+. .+..+.+++|++|.++.+-..+.-..|...
T Consensus 122 ~~G~~kr~~l~~~~~~r~~G----------~~~i~L~~--~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~ 189 (312)
T 1suu_A 122 ASGKIARFESTDFKAVKSRG----------VIVIKLND--KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGT 189 (312)
T ss_dssp TTSEEEEEEGGGGCC----C----------EECBCCCT--TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTB
T ss_pred CCCeEEEEEHHHhhccCCCc----------EEEEecCC--CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCC
Confidence 9999999876543110 001 01111211 34555544 356678999999999988766654444322
Q ss_pred CCCeeeceeecccccCccEEEEEe--cCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEE--Ee
Q psy5892 162 LNNQETPCLVRGEIEGERIVKLSS--AVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDV--AS 237 (340)
Q Consensus 162 ~~~~~~p~~~~~~~~~~~i~~i~~--g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i--~~ 237 (340)
... ..+. ...+..|+.+.. ...+.++++++|.....-...+-..+............+ .....+..+ ..
T Consensus 190 ~Gv----~~i~-L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~~~~~~k--~~~~~lv~~~~~~ 262 (312)
T 1suu_A 190 QGV----CGMK-LKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSD--KKAGSVVDAIAVS 262 (312)
T ss_dssp CCE----ECCC-CCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEECSCTTC--TTTCSEEEEEEEC
T ss_pred CCe----EeEE-eCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCEEeeEccC--CCCCeEEEEEEeC
Confidence 111 1111 112345555543 345678889999888877666644443222211111100 112233332 22
Q ss_pred cCceEEEEcCCCcEEEEc
Q psy5892 238 GGSACTMLNDEGLVYSWG 255 (340)
Q Consensus 238 g~~~~~~lt~~g~v~~~G 255 (340)
..+..++++.+|.+.-.-
T Consensus 263 ~~~~l~~~t~~g~~~r~~ 280 (312)
T 1suu_A 263 EDDEILLVSKRSKALRTV 280 (312)
T ss_dssp TTCEEEEEETTCEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEE
Confidence 456677778888765543
No 36
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=72.27 E-value=49 Score=28.78 Aligned_cols=192 Identities=7% Similarity=-0.008 Sum_probs=98.0
Q ss_pred CCCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc--CCeeEEEEcCC
Q psy5892 67 STQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG--QDHTLFLTESG 144 (340)
Q Consensus 67 ~~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~~~~lt~~g 144 (340)
...|..++......+.-..+|.|+.|-....++ ....+... ...|..++.. ....+.-..+|
T Consensus 176 ~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 176 QARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH---------------QIGTLQGH-SSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEETTSSSC---------------EEEEEECC-SSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceEEEEECCCEEEEEcCCCCEEEEecccCcc---------------eeeEEcCC-CCCeeEEEEcCCCCEEEEEeCCC
Confidence 557888888777777778899999997542211 11111111 2456655543 33455567789
Q ss_pred cEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecC--cEEEEEe---CCCCEEEEeCCCCCCCCCCCccccC
Q psy5892 145 KVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAV--DCVLAVS---DKGDVFGWGNSEYGQISESEMQIST 219 (340)
Q Consensus 145 ~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~l~---~~g~v~~wG~n~~gqlg~~~~~~~~ 219 (340)
.|+.|-...... ...+. .....|..++... ...++.. .++.|..|-....
T Consensus 240 ~v~iwd~~~~~~-----------~~~~~--~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~------------ 294 (401)
T 4aez_A 240 VVQIWDARSSIP-----------KFTKT--NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG------------ 294 (401)
T ss_dssp CEEEEETTCSSE-----------EEEEC--CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC------------
T ss_pred eEEEccCCCCCc-----------cEEec--CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC------------
Confidence 999997433110 00111 1122455555533 2333333 5888999965421
Q ss_pred ceEeecccCcccEEEEEecCce--EEEEc--CCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEc
Q psy5892 220 PRVLSQCKGVSRIVDVASGGSA--CTMLN--DEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIA 295 (340)
Q Consensus 220 p~~i~~~~~~~~i~~i~~g~~~--~~~lt--~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~ 295 (340)
..+........|..++...+. .++.. .+|.|+.|-.. . ........ +.. ....|..++.
T Consensus 295 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~---------~-~~~~~~~~-~~~-----h~~~v~~~~~ 357 (401)
T 4aez_A 295 -ARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS---------S-SGLTKQVD-IPA-----HDTRVLYSAL 357 (401)
T ss_dssp -CEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE---------T-TEEEEEEE-EEC-----CSSCCCEEEE
T ss_pred -CEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecC---------C-ccceeEEE-ecC-----CCCCEEEEEE
Confidence 111111224467777765443 22222 68999998421 0 00111100 001 1234555554
Q ss_pred c--CCceEEEecCCcEEEEeCCC
Q psy5892 296 G--PCTFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 296 G--~~~~~~lt~~g~vy~wG~n~ 316 (340)
. ..+.+....+|.|..|-...
T Consensus 358 s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 358 SPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp CTTSSEEEEECTTSEEEEEECCC
T ss_pred CCCCCEEEEEeCCCcEEEEECCC
Confidence 3 33455566789999997655
No 37
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=71.86 E-value=50 Score=28.72 Aligned_cols=148 Identities=11% Similarity=-0.001 Sum_probs=79.9
Q ss_pred CCCeEEEEeCC--CeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCC
Q psy5892 67 STQIKHLATGR--AHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESG 144 (340)
Q Consensus 67 ~~~i~~i~~g~--~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g 144 (340)
...|..++... .+.++-+.+|.|..|-..... ....+.. ....|..++......+.-..+|
T Consensus 134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~----------------~~~~~~~-~~~~v~~~~~~~~~l~~~~~dg 196 (401)
T 4aez_A 134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT----------------KLRTMAG-HQARVGCLSWNRHVLSSGSRSG 196 (401)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----------------EEEEECC-CSSCEEEEEEETTEEEEEETTS
T ss_pred CCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe----------------EEEEecC-CCCceEEEEECCCEEEEEcCCC
Confidence 44677766644 345555678899988643211 1111211 1356777777667777778899
Q ss_pred cEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceE
Q psy5892 145 KVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRV 222 (340)
Q Consensus 145 ~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~ 222 (340)
.|+.|-.....+ ....+. .....|..++.. ..+.+.-..+|.|..|-.... .+..
T Consensus 197 ~i~i~d~~~~~~----------~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-----------~~~~ 253 (401)
T 4aez_A 197 AIHHHDVRIANH----------QIGTLQ--GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-----------IPKF 253 (401)
T ss_dssp EEEEEETTSSSC----------EEEEEE--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS-----------SEEE
T ss_pred CEEEEecccCcc----------eeeEEc--CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC-----------CccE
Confidence 999997432211 011111 122356666654 345566678899999975431 1111
Q ss_pred eecccCcccEEEEEecC--ceEEEEc---CCCcEEEEc
Q psy5892 223 LSQCKGVSRIVDVASGG--SACTMLN---DEGLVYSWG 255 (340)
Q Consensus 223 i~~~~~~~~i~~i~~g~--~~~~~lt---~~g~v~~~G 255 (340)
. .......|..++... ...++.. .+|.|+.|-
T Consensus 254 ~-~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d 290 (401)
T 4aez_A 254 T-KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290 (401)
T ss_dssp E-ECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred E-ecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence 1 111133455555543 2333332 588899884
No 38
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=71.78 E-value=43 Score=28.00 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=94.4
Q ss_pred CCCeEEEEeC---CCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEE--ccCCeeEEEE
Q psy5892 67 STQIKHLATG---RAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAV--CGQDHTLFLT 141 (340)
Q Consensus 67 ~~~i~~i~~g---~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~--~g~~~~~~lt 141 (340)
+++|..+.+- ..+.+++|++|.+...-...+-+-.. -...+.--++..++.+. .+.++.+++|
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~------------G~~~i~lkegD~l~~~~~~~~~~~ill~T 134 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQ------------GMPIIKLTEGDEVVSIASSVDETHILLFT 134 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCST------------TEECSCCCTTCCEEEEEECCSSCEEEEEE
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcC------------CeEEEecCCCCEEEEEEEeCCCCEEEEEE
Confidence 7889888761 24688899999888876544421100 00111111234555543 3555789999
Q ss_pred cCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCCCCccccC
Q psy5892 142 ESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISESEMQIST 219 (340)
Q Consensus 142 ~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~ 219 (340)
++|++|.+-..+--.+|....... .+. ..+++.|+.+... ..+.+++|++|.+.-.-..++-..........
T Consensus 135 ~~G~~~r~~~~eip~~gR~a~Gv~----~i~-L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~- 208 (276)
T 3no0_A 135 KKGRVARFSVREVPPSTPGARGVQ----GIK-LEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTE- 208 (276)
T ss_dssp TTSEEEEEEGGGSCBCCTTCCCEE----CCC-CCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEE-
T ss_pred CCCEEEEEEhhhCCCcCCCCCCEE----EEc-cCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceE-
Confidence 999999987665554443322111 111 1234567766544 34678889999888776655433332111000
Q ss_pred ceEeecccCcccEEEEE--ecCceEEEEcCCCcEEE--Ec
Q psy5892 220 PRVLSQCKGVSRIVDVA--SGGSACTMLNDEGLVYS--WG 255 (340)
Q Consensus 220 p~~i~~~~~~~~i~~i~--~g~~~~~~lt~~g~v~~--~G 255 (340)
.. .....+..+. .+.+..++++++|++.. +-
T Consensus 209 ----~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~ 243 (276)
T 3no0_A 209 ----VS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKIN 243 (276)
T ss_dssp ----CC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEE
T ss_pred ----EE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeC
Confidence 00 1233444432 35567888999999987 75
No 39
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=71.76 E-value=27 Score=29.41 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=11.5
Q ss_pred CceEEEEcCCCcEEEEc
Q psy5892 239 GSACTMLNDEGLVYSWG 255 (340)
Q Consensus 239 ~~~~~~lt~~g~v~~~G 255 (340)
..|+++. -+++||++|
T Consensus 140 ~~~~~~~-~~~~iyv~G 155 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIG 155 (315)
T ss_dssp BSCEEEE-ETTEEEEEC
T ss_pred cceeEEE-ECCEEEEEe
Confidence 4455555 578999998
No 40
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=70.91 E-value=56 Score=28.90 Aligned_cols=202 Identities=10% Similarity=0.045 Sum_probs=108.1
Q ss_pred CCCeEEEEeCCC-eEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc----CCeeEEEE
Q psy5892 67 STQIKHLATGRA-HTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG----QDHTLFLT 141 (340)
Q Consensus 67 ~~~i~~i~~g~~-~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g----~~~~~~lt 141 (340)
...|..++.... ..+.-..||.|..|-.... + ....+... ...|..++.. ....+.-.
T Consensus 162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~-~---------------~~~~~~~h-~~~v~~l~~~~~~~~~~l~s~s 224 (464)
T 3v7d_B 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKG-C---------------CTHVFEGH-NSTVRCLDIVEYKNIKYIVTGS 224 (464)
T ss_dssp SSCEEEEEECSTTEEEEEETTSCEEEEETTTT-E---------------EEEEECCC-SSCEEEEEEEESSSCEEEEEEE
T ss_pred CcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC-c---------------EEEEECCC-CCccEEEEEecCCCCCEEEEEc
Confidence 557777776544 4444568899999965321 1 11111111 2455555432 24455667
Q ss_pred cCCcEEEEEeCCCCCCCCCCCCC---e--eec----eeec-ccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCC
Q psy5892 142 ESGKVYSCGWGADGQTGLGHLNN---Q--ETP----CLVR-GEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQIS 211 (340)
Q Consensus 142 ~~g~vy~wG~n~~gqlg~~~~~~---~--~~p----~~~~-~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg 211 (340)
.+|.|..|-.............. . ..| ..+. .......+..+.......++-..+|.|..|-....
T Consensus 225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~---- 300 (464)
T 3v7d_B 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM---- 300 (464)
T ss_dssp TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT----
T ss_pred CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC----
Confidence 88999999865433221110000 0 000 0000 01123357777777788888889999999975421
Q ss_pred CCCccccCceEee-cccCcccEEEEEecC--ceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCC
Q psy5892 212 ESEMQISTPRVLS-QCKGVSRIVDVASGG--SACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKS 288 (340)
Q Consensus 212 ~~~~~~~~p~~i~-~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 288 (340)
..+. .......|..++... ...+.-..+|.|..|-.. ....+... .. ...
T Consensus 301 ---------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~------------~~~~~~~~-~~-----h~~ 353 (464)
T 3v7d_B 301 ---------KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE------------NGELMYTL-QG-----HTA 353 (464)
T ss_dssp ---------EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT------------TTEEEEEE-CC-----CSS
T ss_pred ---------cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC------------CCcEEEEE-eC-----CCC
Confidence 1111 111234566666653 355666788999999421 01111111 11 134
Q ss_pred CeEEEEccCCceEEEecCCcEEEEeCCC
Q psy5892 289 KVESLIAGPCTFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 289 ~i~~i~~G~~~~~~lt~~g~vy~wG~n~ 316 (340)
.|..++..+.+.+.-..+|.|..|-.+.
T Consensus 354 ~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 354 LVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred cEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 5677777666777777888888887655
No 41
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=70.24 E-value=51 Score=28.22 Aligned_cols=163 Identities=15% Similarity=0.108 Sum_probs=77.1
Q ss_pred CceEEEEcc------CCe-eEEEEcCCcEEEEEeCC------CCCCCCCCCCCeeece-eecc-----cccCccEEEEEe
Q psy5892 125 EKIMDAVCG------QDH-TLFLTESGKVYSCGWGA------DGQTGLGHLNNQETPC-LVRG-----EIEGERIVKLSS 185 (340)
Q Consensus 125 ~~i~~i~~g------~~~-~~~lt~~g~vy~wG~n~------~gqlg~~~~~~~~~p~-~~~~-----~~~~~~i~~i~~ 185 (340)
..|..++.. ... .++-..+|.|+.|-... ...+. ..|. .+.. ......|..++.
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~ 194 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN-------WSPTLELQGTVESPMTPSQFATSVDI 194 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC-------CCCEEEEEEEECCSSSSCCCCCEEEE
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee-------ccCcceeeeeeccccCCCCCceEEEE
Confidence 456666544 444 55557889999997554 22211 0110 1100 111234555554
Q ss_pred cCc-EEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccC-------cccEEEEEecC--ceEEEEcCC---CcEE
Q psy5892 186 AVD-CVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKG-------VSRIVDVASGG--SACTMLNDE---GLVY 252 (340)
Q Consensus 186 g~~-~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~-------~~~i~~i~~g~--~~~~~lt~~---g~v~ 252 (340)
..+ ..++-..+|.|+.|-.... ..+..+.. ...|..++... .+.++-..+ |.|.
T Consensus 195 ~~~~~l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~ 261 (397)
T 1sq9_A 195 SERGLIATGFNNGTVQISELSTL-------------RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT 261 (397)
T ss_dssp CTTSEEEEECTTSEEEEEETTTT-------------EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred CCCceEEEEeCCCcEEEEECCCC-------------ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEE
Confidence 433 4455567888999865421 11111111 34566666643 344444566 8888
Q ss_pred EEcCCCCCCCCCCccccCceeecccccC----CcccCCCCCeEEEEcc--CCceEEEecCCcEEEEeCCC
Q psy5892 253 SWGYGLLGQGPKVSRSMKPTLIPSTLFG----QHQFNPKSKVESLIAG--PCTFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 253 ~~G~g~~g~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~ 316 (340)
.|-... ......+...... ...+.....|..++.. ....+.-..+|.|+.|-...
T Consensus 262 i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 262 LYETEF---------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp EEETTT---------CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred EEECCC---------CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 884210 0001111110000 0000013456666654 33455566789999997654
No 42
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=69.89 E-value=47 Score=27.67 Aligned_cols=217 Identities=11% Similarity=-0.023 Sum_probs=105.5
Q ss_pred CCCeEEEEeC--CC-eEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccc-cCCCceEEEEcc-CCeeEEEE
Q psy5892 67 STQIKHLATG--RA-HTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIAD-LEGEKIMDAVCG-QDHTLFLT 141 (340)
Q Consensus 67 ~~~i~~i~~g--~~-~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~g-~~~~~~lt 141 (340)
...|..++.. .. ..+.-..+|.|+.|-....++. ..+.. .....|..++.. ....+.-.
T Consensus 56 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~----------------~~~~~~~~~~~v~~l~~~~~~~l~s~~ 119 (342)
T 1yfq_A 56 KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF----------------QALTNNEANLGICRICKYGDDKLIAAS 119 (342)
T ss_dssp SSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE----------------EECBSCCCCSCEEEEEEETTTEEEEEE
T ss_pred CCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce----------------EeccccCCCCceEEEEeCCCCEEEEEc
Confidence 4456666554 44 5566677899999854122221 11111 013455555533 55666677
Q ss_pred cCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCce
Q psy5892 142 ESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPR 221 (340)
Q Consensus 142 ~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~ 221 (340)
.++.|+.|-...... ........+.... . ....|..++...+..++...++.|+.|-....+. ....
T Consensus 120 ~d~~i~iwd~~~~~~---~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------~~~~ 186 (342)
T 1yfq_A 120 WDGLIEVIDPRNYGD---GVIAVKNLNSNNT-K-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED--------DNGT 186 (342)
T ss_dssp TTSEEEEECHHHHTT---BCEEEEESCSSSS-S-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT--------CCCE
T ss_pred CCCeEEEEccccccc---ccccccCCeeeEE-e-eCCceEEEEecCCcEEEEeCCCeEEEEECCcccc--------ccce
Confidence 889999996432100 0000000011111 1 2346778888777777788899999997653111 0011
Q ss_pred EeecccCcccEEEEEecC---ceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEcc--
Q psy5892 222 VLSQCKGVSRIVDVASGG---SACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAG-- 296 (340)
Q Consensus 222 ~i~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G-- 296 (340)
.... .....|..++... ...++-..+|.+..|-....+.. ........+...............|..++.-
T Consensus 187 ~~~~-~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 262 (342)
T 1yfq_A 187 IEES-GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD---YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262 (342)
T ss_dssp EEEC-SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS---TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT
T ss_pred eeec-CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcc---cccccceeeecccccccccccceeEEEEEEcCC
Confidence 1111 1234566666653 44556677899988853211100 0001111111100000000011256666653
Q ss_pred CCceEEEecCCcEEEEeCCC
Q psy5892 297 PCTFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 297 ~~~~~~lt~~g~vy~wG~n~ 316 (340)
....+.-..+|.|+.|=...
T Consensus 263 ~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 263 HKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp TCCEEEEETTSCEEEEETTT
T ss_pred CCEEEEecCCceEEEEcCcc
Confidence 33455567788999997654
No 43
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=69.21 E-value=50 Score=27.69 Aligned_cols=160 Identities=8% Similarity=-0.057 Sum_probs=77.2
Q ss_pred CCCeEEEEeCC--CeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEc--cCCeeEEEEc
Q psy5892 67 STQIKHLATGR--AHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVC--GQDHTLFLTE 142 (340)
Q Consensus 67 ~~~i~~i~~g~--~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--g~~~~~~lt~ 142 (340)
...|..++... .+.+....||.|+.|-.... + ....+. ....|..++. .....++...
T Consensus 74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~---------------~~~~~~--~~~~v~~~~~~~~~~~l~~~~~ 135 (369)
T 3zwl_B 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG-Q---------------CVATWK--SPVPVKRVEFSPCGNYFLAILD 135 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-C---------------EEEEEE--CSSCEEEEEECTTSSEEEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-c---------------EEEEee--cCCCeEEEEEccCCCEEEEecC
Confidence 44677776653 34555567899999964321 1 111111 1234544443 3334455555
Q ss_pred C-----CcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEe--cCcEEEEEeCCCCEEEEeCCCCCCCCCCCc
Q psy5892 143 S-----GKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSS--AVDCVLAVSDKGDVFGWGNSEYGQISESEM 215 (340)
Q Consensus 143 ~-----g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~--g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~ 215 (340)
+ |.|+.|-....................+........+..++. ...+.++...+|.|+.|-....++
T Consensus 136 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------ 209 (369)
T 3zwl_B 136 NVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE------ 209 (369)
T ss_dssp CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE------
T ss_pred CccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE------
Confidence 5 888888754433211100000000011111111113444444 344566667889999996543110
Q ss_pred cccCceEeecccCcccEEEEEecCc--eEEEEcCCCcEEEEc
Q psy5892 216 QISTPRVLSQCKGVSRIVDVASGGS--ACTMLNDEGLVYSWG 255 (340)
Q Consensus 216 ~~~~p~~i~~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G 255 (340)
....+. .....|..++...+ ..++...+|.|+.|-
T Consensus 210 ---~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 210 ---YVDSID--LHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp ---EEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ---eEEEEe--cCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence 011111 12346777766433 345556788999984
No 44
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=68.57 E-value=57 Score=28.09 Aligned_cols=224 Identities=12% Similarity=0.107 Sum_probs=115.2
Q ss_pred EEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccC-----CeeEEEEcCCcEE
Q psy5892 73 LATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQ-----DHTLFLTESGKVY 147 (340)
Q Consensus 73 i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~-----~~~~~lt~~g~vy 147 (340)
.+....+.+++|+.|++|..-....-..+... . ..+....++--++++|+.+.+.. ...+++|++|.+.
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~---~---G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iK 122 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTA---R---GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVK 122 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSS---C---CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccC---C---CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEE
Confidence 44566668889999999998754322111100 0 00111122222367888886653 4678889999887
Q ss_pred EEEeCCCCCCCCCCCCCeeeceeecccccCccEEEE--EecCcEEEEEeCCCCEEEEeCC--CCCCCCCCCccccCceEe
Q psy5892 148 SCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKL--SSAVDCVLAVSDKGDVFGWGNS--EYGQISESEMQISTPRVL 223 (340)
Q Consensus 148 ~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i--~~g~~~~~~l~~~g~v~~wG~n--~~gqlg~~~~~~~~p~~i 223 (340)
-.-...+..... .-..-..+. ++..++.+ +....+.+++|++|+++.+-.. .--.+|....... .+
T Consensus 123 r~~l~~~~~~~r----~G~~~i~lk---e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~---~i 192 (327)
T 3uc1_A 123 KSKLTDFDSNRS----GGIVAVNLR---DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQ---GM 192 (327)
T ss_dssp EEEGGGGCCCCS----SCEESCBCC---TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEE---SS
T ss_pred EeEHHHhhcccc----CceEEEEEC---CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCee---ee
Confidence 665333221100 000111111 22234433 3456788999999999999876 4444444222211 12
Q ss_pred ecccCcccEEEEEec--CceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEE--ccCCc
Q psy5892 224 SQCKGVSRIVDVASG--GSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLI--AGPCT 299 (340)
Q Consensus 224 ~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~--~G~~~ 299 (340)
. +...+.|+.+..- ..+.+++|++|.+--.--.++...... ..- +.. +... .++..++.+. .+..+
T Consensus 193 ~-L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~---~~G--~~~--~~l~--~~~d~lv~~~~~~~~~~ 262 (327)
T 3uc1_A 193 R-FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRG---GKG--VLT--VMYD--RRRGRLVGALIVDDDSE 262 (327)
T ss_dssp C-CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTT---SCC--EES--SCCC--TTTCSEEEEEEECTTCE
T ss_pred c-CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcC---CCc--EEE--EEec--CCCCeEEEEEEeCCCcc
Confidence 2 2446678777664 345777788886654421111000000 000 000 0000 0123344433 35678
Q ss_pred eEEEecCCcEEEE--------eCCCCCcccC
Q psy5892 300 FGAITNFGHLYMW--------GKNQYGQLGL 322 (340)
Q Consensus 300 ~~~lt~~g~vy~w--------G~n~~GqLG~ 322 (340)
.+++|++|++.-+ |++..|--+.
T Consensus 263 i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i 293 (327)
T 3uc1_A 263 LYAVTSGGGVIRTAARQVRKAGRQTKGVRLM 293 (327)
T ss_dssp EEEEEGGGCEEEEEGGGSCBCCTTSCCEECT
T ss_pred EEEEcCCCeEEEEehhhccccCCCCCCeEeE
Confidence 8999999998877 5555555544
No 45
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=68.23 E-value=20 Score=31.90 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=39.9
Q ss_pred EEEEEecCceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEecCCcEEE
Q psy5892 232 IVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYM 311 (340)
Q Consensus 232 i~~i~~g~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~ 311 (340)
|.+++. ....+++.+++.|..|-...+..+. .++.. ...+.++.+-....++++++|.|+.
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~~---------~~~~~---------~~~v~~i~~~~p~~av~~~dG~L~v 150 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEFR---------TVTSF---------EKPVFQLKNVNNTLVILNSVNDLSA 150 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCEE---------EEEEC---------SSCEEEEEECSSEEEEEETTSEEEE
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhccC---------cccee---------ecceeeEEecCCCEEEEECCCCEEE
Confidence 899999 6667777789999999533332211 11110 1234455544445777888888888
Q ss_pred EeCC
Q psy5892 312 WGKN 315 (340)
Q Consensus 312 wG~n 315 (340)
|=-.
T Consensus 151 ~dl~ 154 (388)
T 1xip_A 151 LDLR 154 (388)
T ss_dssp EETT
T ss_pred EEcc
Confidence 8543
No 46
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=63.32 E-value=69 Score=27.19 Aligned_cols=212 Identities=13% Similarity=0.146 Sum_probs=107.1
Q ss_pred cCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEe-----CCCeEEEEe
Q psy5892 10 GYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLAT-----GRAHTIVIT 84 (340)
Q Consensus 10 G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~-----g~~~~~~lt 84 (340)
...+.++. |+.|+ +|.+-...--..+...... .....+.+.. +++|..+.. ...+.+++|
T Consensus 52 ~~~~ll~f--T~~G~--~~~~~~~elp~~~~~a~G~--------~i~~~l~l~~---~e~i~~~~~~~~~~~~~~ll~~T 116 (307)
T 1zi0_A 52 THDHILCF--SSRGR--VYSMKVYQLPEATRGARGR--------PIVNLLPLEQ---DERITAILPVTEFEEGVKVFMAT 116 (307)
T ss_dssp TTCEEEEE--ETTSE--EEEEEGGGSCCCCSSSCCE--------EGGGTSCCCT---TCCEEEEEEESCCCTTCEEEEEE
T ss_pred CCCEEEEE--ECCCE--EEEEEhhHCcCCCCCCCCe--------EhhhccCCCC---CCEEEEEEEeccCCCCcEEEEEe
Confidence 33334444 89998 8888765544444322110 0112233333 778888765 234578889
Q ss_pred CCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEE--EccCCeeEEEEcCCcEEEEEeCCCCCCCCCCC
Q psy5892 85 DNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDA--VCGQDHTLFLTESGKVYSCGWGADGQTGLGHL 162 (340)
Q Consensus 85 ~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i--~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~ 162 (340)
++|.+--.-...+-.... .......+. ++..++.+ ..+.+..+++|++|+++.+-..+--.+|....
T Consensus 117 ~~G~~Krt~l~e~~~~~r---------~G~~~i~l~--~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~ 185 (307)
T 1zi0_A 117 ANGTVKKTVLTEFNRLRT---------AGKVAIKLV--DGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT 185 (307)
T ss_dssp TTSEEEEEEGGGGTTCCT---------TCEESSCCC--TTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred CCCeEEEEEHHHhhcccc---------CCeEEEEEC--CCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCC
Confidence 999887765433211000 000000111 13444443 34667899999999999887665555443221
Q ss_pred CCeeeceeecccccCccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEe--c
Q psy5892 163 NNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVAS--G 238 (340)
Q Consensus 163 ~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~--g 238 (340)
.. ..+. ...++.|+.+..- ....++++++|.+--.-..++-.-+........+. .......+..+.. .
T Consensus 186 Gv----~~i~-L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~---~~~~~~~lv~~~~v~~ 257 (307)
T 1zi0_A 186 GV----RGIR-LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK---VTERNGLVVGAVQVDD 257 (307)
T ss_dssp CE----ECCC-CCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSC---CCTTTCSEEEEEEECT
T ss_pred Ce----EeEE-eCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeE---ecCCCCeEEEEEEeCC
Confidence 11 1111 1234567766543 23466777777655554333321111111111111 1112244544433 4
Q ss_pred CceEEEEcCCCcEEEEc
Q psy5892 239 GSACTMLNDEGLVYSWG 255 (340)
Q Consensus 239 ~~~~~~lt~~g~v~~~G 255 (340)
.+..+++|++|.+.-+-
T Consensus 258 ~~~l~~~t~~g~~ir~~ 274 (307)
T 1zi0_A 258 CDQIMMITDAGTLVRTR 274 (307)
T ss_dssp TCEEEEEESSCCEEEEE
T ss_pred CceEEEEcCCCcEEEEe
Confidence 56688899999988764
No 47
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=62.88 E-value=67 Score=26.89 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=12.0
Q ss_pred eEEEEeCCCcEEEEecC
Q psy5892 79 HTIVITDNEGAFTFGNN 95 (340)
Q Consensus 79 ~~~~lt~~g~l~~~G~n 95 (340)
+..+...+++||.+|-.
T Consensus 49 ~~~~~~~~~~lyv~GG~ 65 (318)
T 2woz_A 49 HSSIVTQQNQVYVVGGL 65 (318)
T ss_dssp EEEEECSSSCEEEEESS
T ss_pred ceEEEEECCEEEEECCc
Confidence 34445567999999963
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=62.35 E-value=83 Score=27.74 Aligned_cols=205 Identities=4% Similarity=-0.025 Sum_probs=107.0
Q ss_pred CCCeEEEEeC----CCeEEEEeCCCcEEEEecCCCCCccCCCCCCcc---c----cCCceeccccccCCCceEEEEccCC
Q psy5892 67 STQIKHLATG----RAHTIVITDNEGAFTFGNNSFGQCGRGIVQEED---Y----QGKWFCHNIADLEGEKIMDAVCGQD 135 (340)
Q Consensus 67 ~~~i~~i~~g----~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~---~----~~~~~~~~~~~~~~~~i~~i~~g~~ 135 (340)
...|..++.. ....+.-..||.|..|-................ . ........+.. ....+..++....
T Consensus 203 ~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 281 (464)
T 3v7d_B 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG-HMASVRTVSGHGN 281 (464)
T ss_dssp SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC-CSSCEEEEEEETT
T ss_pred CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC-ccceEEEEcCCCC
Confidence 4456655543 244555678899999976543222110000000 0 00000111111 1356777777777
Q ss_pred eeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCCC
Q psy5892 136 HTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISES 213 (340)
Q Consensus 136 ~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~~ 213 (340)
..+.-..+|.|+.|-...... ...+. .....|..++.. ....+.-..+|.|..|-....
T Consensus 282 ~l~~~~~d~~i~vwd~~~~~~-----------~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------ 342 (464)
T 3v7d_B 282 IVVSGSYDNTLIVWDVAQMKC-----------LYILS--GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG------ 342 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEE-----------EEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT------
T ss_pred EEEEEeCCCeEEEEECCCCcE-----------EEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------
Confidence 777888899999997432110 01111 122346666554 346666778899999965321
Q ss_pred CccccCceEee-cccCcccEEEEEecCceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEE
Q psy5892 214 EMQISTPRVLS-QCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVES 292 (340)
Q Consensus 214 ~~~~~~p~~i~-~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~ 292 (340)
..+. .......|..++....+.+.-..||.|..|-... ......... .....+..
T Consensus 343 -------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~---------~~~~~~~~~--------~~~~~~~~ 398 (464)
T 3v7d_B 343 -------ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND---------YSRKFSYHH--------TNLSAITT 398 (464)
T ss_dssp -------EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT---------CCEEEEEEC--------TTCCCEEE
T ss_pred -------cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC---------CceeeeecC--------CCCccEEE
Confidence 1111 1112456778887777788888999999994211 000111100 01244555
Q ss_pred EEccCCceEEEecCCcEEEEeCCC
Q psy5892 293 LIAGPCTFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 293 i~~G~~~~~~lt~~g~vy~wG~n~ 316 (340)
++.... .++...+|.|..|-...
T Consensus 399 ~~~~~~-~l~~~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 399 FYVSDN-ILVSGSENQFNIYNLRS 421 (464)
T ss_dssp EEECSS-EEEEEETTEEEEEETTT
T ss_pred EEeCCC-EEEEecCCeEEEEECCC
Confidence 555444 44455589999997655
No 49
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=60.53 E-value=28 Score=29.11 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=11.5
Q ss_pred CeeEEEEcCCcEEEEEe
Q psy5892 135 DHTLFLTESGKVYSCGW 151 (340)
Q Consensus 135 ~~~~~lt~~g~vy~wG~ 151 (340)
.|++++. +++||++|-
T Consensus 48 ~~~~~~~-~~~lyv~GG 63 (306)
T 3ii7_A 48 DAACVFW-DNVVYILGG 63 (306)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred eeEEEEE-CCEEEEEeC
Confidence 4666654 789999983
No 50
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=60.17 E-value=74 Score=26.50 Aligned_cols=199 Identities=13% Similarity=-0.007 Sum_probs=99.0
Q ss_pred CCCeEEEEeCCC-----eEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEE--------cc
Q psy5892 67 STQIKHLATGRA-----HTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAV--------CG 133 (340)
Q Consensus 67 ~~~i~~i~~g~~-----~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~--------~g 133 (340)
...|..++.... ..+.-..+|.|..|-.....+ ....+... ...|..+. ..
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------~~~~~~~~-~~~v~~~~~~~~~~~s~~ 128 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM---------------PVYSVKGH-KEIINAIDGIGGLGIGEG 128 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS---------------CSEEECCC-SSCEEEEEEESGGGCC-C
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc---------------cEEEEEec-ccceEEEeeccccccCCC
Confidence 446777777653 344456789999996543210 01111111 24455552 23
Q ss_pred CCeeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEE------ecCcEEEEEeCCCCEEEEeCCCC
Q psy5892 134 QDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLS------SAVDCVLAVSDKGDVFGWGNSEY 207 (340)
Q Consensus 134 ~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~------~g~~~~~~l~~~g~v~~wG~n~~ 207 (340)
....+.-..+|.|..|-....... . ....... ......+..++ ....+.++-..+|.|+.|-....
T Consensus 129 ~~~l~~~~~d~~i~vwd~~~~~~~------~-~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 200 (357)
T 3i2n_A 129 APEIVTGSRDGTVKVWDPRQKDDP------V-ANMEPVQ-GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM 200 (357)
T ss_dssp CCEEEEEETTSCEEEECTTSCSSC------S-EEECCCT-TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT
T ss_pred ccEEEEEeCCCeEEEEeCCCCCCc------c-eeccccC-CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC
Confidence 335556677899999874332210 0 0000000 11122466655 34455666678899999975431
Q ss_pred CCCCCCCccccCceEeecccCcccEEEEEecC-----ceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCc
Q psy5892 208 GQISESEMQISTPRVLSQCKGVSRIVDVASGG-----SACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQH 282 (340)
Q Consensus 208 gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~ 282 (340)
..+........|..++... ...++-..+|.|+.|-.. .......++.....
T Consensus 201 -------------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~-- 256 (357)
T 3i2n_A 201 -------------ALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR---------TQHPTKGFASVSEK-- 256 (357)
T ss_dssp -------------EEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE---------EEETTTEEEEEEEE--
T ss_pred -------------ceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc---------CCCcccceeeeccC--
Confidence 1111111134677776653 445566788999998521 00000011000000
Q ss_pred ccCCCCCeEEEEccCC---ceEEEecCCcEEEEeCC
Q psy5892 283 QFNPKSKVESLIAGPC---TFGAITNFGHLYMWGKN 315 (340)
Q Consensus 283 ~~~~~~~i~~i~~G~~---~~~~lt~~g~vy~wG~n 315 (340)
.....|..++.-.. ..+.-..+|.|+.|-..
T Consensus 257 --~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 257 --AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp --CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred --CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 01346777766544 34445688999999754
No 51
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=60.07 E-value=83 Score=26.99 Aligned_cols=215 Identities=13% Similarity=0.121 Sum_probs=107.2
Q ss_pred ecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCC-----CeEEEE
Q psy5892 9 CGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGR-----AHTIVI 83 (340)
Q Consensus 9 ~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~-----~~~~~l 83 (340)
....+.+++ |+.|+ +|..-...--..+..... ......+.+.. +++|..+..-. .+.+++
T Consensus 48 ~t~d~ll~f--T~~Gr--~~~~~~~elp~~~r~a~G--------~~i~~~i~L~~---~e~Iv~~~~~~~~~~~~~ll~~ 112 (323)
T 1wp5_A 48 NTKDVLLLF--TNKGN--YLYCPVHELPDIRWKDLG--------QHIANIIPIDR---DEEIIKAIPINDFELNGYFLFV 112 (323)
T ss_dssp ETTSEEEEE--ETTSE--EEEEEGGGSCBCCTTSCC--------EEGGGTSCCCT---TCCEEEEEEESCTTSSCEEEEE
T ss_pred CCCCEEEEE--ECCCE--EEEEEHHHCcCCCCCCCC--------cChhhccCCCC---CCEEEEEEEecccCCCceEEEE
Confidence 333444444 89999 998876543333332211 00112233333 66788765543 357888
Q ss_pred eCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEE--EccCCeeEEEEcCCcEEEEEeCCCCCCCCCC
Q psy5892 84 TDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDA--VCGQDHTLFLTESGKVYSCGWGADGQTGLGH 161 (340)
Q Consensus 84 t~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i--~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~ 161 (340)
|++|.+--.-...+-.... ..-.....+. ++..++.+ ..+.++.+++|++|+++.+-.++-..+|...
T Consensus 113 T~~G~iKrt~l~e~~~~~r--------~~G~~ai~l~--e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a 182 (323)
T 1wp5_A 113 TRNGMVKKTELKHYKAQRY--------SKPLTGINLK--NDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRA 182 (323)
T ss_dssp ETTSEEEEEEGGGGCCSCC--------SSCEECSCCC--TTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSC
T ss_pred eCCCeEEEeEHHHhhhccc--------cCceEEEEeC--CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCC
Confidence 9999887765443311100 0000000111 12444433 3467789999999999998876654444311
Q ss_pred CCCeeeceeecccccCccEEEEEec--Cc-EEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEE--E
Q psy5892 162 LNNQETPCLVRGEIEGERIVKLSSA--VD-CVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDV--A 236 (340)
Q Consensus 162 ~~~~~~p~~~~~~~~~~~i~~i~~g--~~-~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i--~ 236 (340)
. ..+......+..|+.+..- .. ..+.++++|...-.-...+-.-+........++..+ .+...+..+ .
T Consensus 183 ~-----GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~--~~~~~l~~~~~v 255 (323)
T 1wp5_A 183 A-----GVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELK--ANPHRISGFVVA 255 (323)
T ss_dssp C-----CEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCS--SSCCCEEEEEEE
T ss_pred c-----CEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecC--CCCceEEEEEEe
Confidence 1 1111111233456655432 22 566777777655544443322222222222222111 112234432 3
Q ss_pred ecCceEEEEcCCCcEEEEc
Q psy5892 237 SGGSACTMLNDEGLVYSWG 255 (340)
Q Consensus 237 ~g~~~~~~lt~~g~v~~~G 255 (340)
.+.+..++++++|.+.-.-
T Consensus 256 ~~~~~i~~it~~g~~ir~~ 274 (323)
T 1wp5_A 256 QDSDTIYLQTEKSFIETIK 274 (323)
T ss_dssp CTTCEEEEEETTSCEEEEE
T ss_pred CCCCeEEEEeCCCeEEEEE
Confidence 3567788999999987664
No 52
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=59.67 E-value=69 Score=26.51 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=12.0
Q ss_pred CCeeEEEEcCCcEEEEEe
Q psy5892 134 QDHTLFLTESGKVYSCGW 151 (340)
Q Consensus 134 ~~~~~~lt~~g~vy~wG~ 151 (340)
..|++++. +++||++|-
T Consensus 100 ~~~~~~~~-~~~iyv~GG 116 (302)
T 2xn4_A 100 STLGAAVL-NGLLYAVGG 116 (302)
T ss_dssp BSCEEEEE-TTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEcC
Confidence 34666654 789999983
No 53
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=59.45 E-value=77 Score=26.44 Aligned_cols=211 Identities=12% Similarity=0.111 Sum_probs=112.3
Q ss_pred CCCeEEEEeC--CCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc---CCeeEEEE
Q psy5892 67 STQIKHLATG--RAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG---QDHTLFLT 141 (340)
Q Consensus 67 ~~~i~~i~~g--~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g---~~~~~~lt 141 (340)
...+..+... ..+.+++|+.|++|..-.... ..+ ... . + --++++|+.+.+- ....+++|
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~l---p~~-----~~~---~---l-l~~~e~i~~v~~~~~~~~~~v~~T 87 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQA---LQG-----SKV---S---L-KSREEKIVGAFIREKFGNRLLLAT 87 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHH---HTS-----EEC---C---C-SSTTCCEEEEEEGGGSCSEEEEEE
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhC---ccC-----ccc---c---c-CCCCCEEEEEECCcCCCCEEEEEe
Confidence 4455554443 345889999999998653221 000 000 0 2 1136788888662 24688899
Q ss_pred cCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEe--cCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccC
Q psy5892 142 ESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSS--AVDCVLAVSDKGDVFGWGNSEYGQISESEMQIST 219 (340)
Q Consensus 142 ~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~--g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~ 219 (340)
++|.+.-.--.++.+- . . ....+. ..++..++.+.. ...+.+++|++|++|.+-..+.-.+|.......
T Consensus 88 ~~G~iKr~~l~~~~~~----~-~--G~~~i~-lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~- 158 (276)
T 3no0_A 88 KKGYVKKIPLAEFEYK----A-Q--GMPIIK-LTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ- 158 (276)
T ss_dssp TTSEEEEEEGGGTTTC----S-T--TEECSC-CCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE-
T ss_pred CCCEEEEEEHHHhhhh----c-C--CeEEEe-cCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE-
Confidence 9998887664443211 0 0 011111 112334544433 455789999999999997665544444222111
Q ss_pred ceEeecccCcccEEEEEec--CceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEE--c
Q psy5892 220 PRVLSQCKGVSRIVDVASG--GSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLI--A 295 (340)
Q Consensus 220 p~~i~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~--~ 295 (340)
.+.. ...+.|..+..- ....+++|++|.+.-.--.++...... . .-+.. + .++..++.+. .
T Consensus 159 --~i~L-~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~---g--kGv~~-i------~~~~~lv~~~~~~ 223 (276)
T 3no0_A 159 --GIKL-EKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRG---V--KGTEV-S------GTKDTLVDLIPIK 223 (276)
T ss_dssp --CCCC-CTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTT---C--CCEEC-C------CSSSCEEEEEEES
T ss_pred --EEcc-CCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCC---C--cceEE-E------cCCCcEEEEEEeC
Confidence 1222 335677776554 346778888888766542221111000 0 00000 0 0123454442 3
Q ss_pred cCCceEEEecCCcEEE--EeCCC
Q psy5892 296 GPCTFGAITNFGHLYM--WGKNQ 316 (340)
Q Consensus 296 G~~~~~~lt~~g~vy~--wG~n~ 316 (340)
++...+++|++|++.- +-.++
T Consensus 224 ~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 224 EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCEEEEEcCCCeEEEeeeCHHH
Confidence 5678899999999988 64443
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=58.48 E-value=76 Score=26.10 Aligned_cols=145 Identities=8% Similarity=-0.066 Sum_probs=76.9
Q ss_pred CCCeEEEEeCC--CeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc--CCeeEEEEc
Q psy5892 67 STQIKHLATGR--AHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG--QDHTLFLTE 142 (340)
Q Consensus 67 ~~~i~~i~~g~--~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~~~~lt~ 142 (340)
...|..++... ...+.-+.+|.|+.|-.... .....+... ...|..++.. ....+....
T Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----------------~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 141 APACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----------------TLVRQFQGH-TDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----------------EEEEEECCC-SSCEEEEEECTTSSEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----------------ceeeeeecc-cCceEEEEECCCCCEEEEEec
Confidence 34566666543 34555567888998864321 111112211 3456666543 335556677
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCc
Q psy5892 143 SGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISESEMQISTP 220 (340)
Q Consensus 143 ~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p 220 (340)
+|.|+.|-...... ..... ....+..++.. ....++-..+|.|+.|-....
T Consensus 204 dg~i~~~d~~~~~~-----------~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~------------- 256 (337)
T 1gxr_A 204 DNTVRSWDLREGRQ-----------LQQHD---FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP------------- 256 (337)
T ss_dssp TSEEEEEETTTTEE-----------EEEEE---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-------------
T ss_pred CCcEEEEECCCCce-----------Eeeec---CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------
Confidence 89999987432110 00111 12245555443 345556667888888865421
Q ss_pred eEeecccCcccEEEEEecC--ceEEEEcCCCcEEEEc
Q psy5892 221 RVLSQCKGVSRIVDVASGG--SACTMLNDEGLVYSWG 255 (340)
Q Consensus 221 ~~i~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G 255 (340)
...........|..++... ...+....+|.|..|-
T Consensus 257 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp CEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 1111112244677777653 3455567789999994
No 55
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=58.36 E-value=83 Score=26.45 Aligned_cols=200 Identities=12% Similarity=0.081 Sum_probs=101.4
Q ss_pred CCCeEEEEeCCCe--EEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc----CCeeEEE
Q psy5892 67 STQIKHLATGRAH--TIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG----QDHTLFL 140 (340)
Q Consensus 67 ~~~i~~i~~g~~~--~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g----~~~~~~l 140 (340)
...|..++...+. .+.-..||.|+.|-.... .......+..- ...|..++-. ....+.-
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--------------~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~ 75 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------THKLIDTLTGH-EGPVWRVDWAHPKFGTILASC 75 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETT--------------EEEEEEEECCC-SSCEEEEEECCGGGCSEEEEE
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCC--------------cceeeeEecCC-CCcEEEEEeCCCCCCCEEEEe
Confidence 4466676665443 333346888888854210 00111112111 3567667643 4556666
Q ss_pred EcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecC----cEEEEEeCCCCEEEEeCCCCCCCCCCCcc
Q psy5892 141 TESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAV----DCVLAVSDKGDVFGWGNSEYGQISESEMQ 216 (340)
Q Consensus 141 t~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~----~~~~~l~~~g~v~~wG~n~~gqlg~~~~~ 216 (340)
..||.|..|-..... ..+.... ......|..++... ...++...+|.|..|-......
T Consensus 76 ~~dg~v~iwd~~~~~----------~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------- 137 (379)
T 3jrp_A 76 SYDGKVLIWKEENGR----------WSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------- 137 (379)
T ss_dssp ETTSCEEEEEEETTE----------EEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-------
T ss_pred ccCCEEEEEEcCCCc----------eeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-------
Confidence 788999999743311 1111111 11233566666653 4566778899999997553211
Q ss_pred ccCceEeecccCcccEEEEEecC---------------ceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCC
Q psy5892 217 ISTPRVLSQCKGVSRIVDVASGG---------------SACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQ 281 (340)
Q Consensus 217 ~~~p~~i~~~~~~~~i~~i~~g~---------------~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~ 281 (340)
............|..++... ...++-..+|.|+.|-.. .......+...+..
T Consensus 138 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~- 204 (379)
T 3jrp_A 138 ---TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN---------SDAQTYVLESTLEG- 204 (379)
T ss_dssp ---CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEE---------TTTTEEEEEEEECC-
T ss_pred ---eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEec---------CCCcceeeEEEEec-
Confidence 01111111234566666543 445566788999999410 00011011100111
Q ss_pred cccCCCCCeEEEEccCC-----ceEEEecCCcEEEEeCCC
Q psy5892 282 HQFNPKSKVESLIAGPC-----TFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 282 ~~~~~~~~i~~i~~G~~-----~~~~lt~~g~vy~wG~n~ 316 (340)
....|..++.-.. ..+....+|.|..|-...
T Consensus 205 ----h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 205 ----HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp ----CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ----ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 1245667766543 344456788899986554
No 56
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=57.75 E-value=88 Score=26.59 Aligned_cols=219 Identities=10% Similarity=0.112 Sum_probs=110.3
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEE--EEccCCeeEEEEcCCcEEEEEeCCC
Q psy5892 77 RAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMD--AVCGQDHTLFLTESGKVYSCGWGAD 154 (340)
Q Consensus 77 ~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~--i~~g~~~~~~lt~~g~vy~wG~n~~ 154 (340)
....+++|++|.+-..-...+.....+ ..-...+.--++..++. ++.+.++.+++|+.|++|..--..-
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~---------~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~i 78 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTG---------GKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEI 78 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSS---------CCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGS
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccC---------CCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHC
Confidence 445788999998876654433211110 00000111111344444 4556778999999999998764432
Q ss_pred CCCCCCCCCCeeeceeecccccCccEEEEEec-----CcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCc
Q psy5892 155 GQTGLGHLNNQETPCLVRGEIEGERIVKLSSA-----VDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGV 229 (340)
Q Consensus 155 gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g-----~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~ 229 (340)
-..+..... ......+. ..+++.|+.+... ..+.+++|++|.++-.-..++-.. . ......-.+.+.
T Consensus 79 p~~~r~~~G-~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~-r-----~~G~~~i~L~~~ 150 (312)
T 1suu_A 79 KDSSRASKG-QNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV-K-----SRGVIVIKLNDK 150 (312)
T ss_dssp CC--------CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----------CEECBCCCTT
T ss_pred CCCCccCCC-cChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc-C-----CCcEEEEecCCC
Confidence 222211100 01111222 2245567777664 356888999999998876543111 0 011111112234
Q ss_pred ccEEEEEe--cCceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEc--cCCceEEEec
Q psy5892 230 SRIVDVAS--GGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIA--GPCTFGAITN 305 (340)
Q Consensus 230 ~~i~~i~~--g~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~--G~~~~~~lt~ 305 (340)
..+..+.. +....+++|++|.+.-+--.++..... ....-..+. ..++..|+.+.. ...+.+++++
T Consensus 151 d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR--~~~Gv~~i~--------L~~~d~vv~~~~v~~~~~l~~vt~ 220 (312)
T 1suu_A 151 DFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNR--GTQGVCGMK--------LKEGDLFVKVLSVKENPYLLIVSE 220 (312)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT--TBCCEECCC--------CCTTCCEEEEEECTTCSEEEEEET
T ss_pred CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCC--CCCCeEeEE--------eCCCCEEEEEEEECCCCeEEEEEC
Confidence 55555544 456788899999998875322211000 001111111 112455666543 3456788999
Q ss_pred CCcEEEEeCCCCCcccC
Q psy5892 306 FGHLYMWGKNQYGQLGL 322 (340)
Q Consensus 306 ~g~vy~wG~n~~GqLG~ 322 (340)
+|.+...-.+++-..+.
T Consensus 221 ~G~~kr~~~~e~~~~~R 237 (312)
T 1suu_A 221 NGYGKRLNMSKISELKR 237 (312)
T ss_dssp TSEEEEEEGGGSCBCCT
T ss_pred CCceEEEEHHHhcccCC
Confidence 99877666655544443
No 57
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=57.38 E-value=1e+02 Score=27.10 Aligned_cols=116 Identities=14% Similarity=0.139 Sum_probs=64.1
Q ss_pred cCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeC-----CCeEEEEeCCCcEEEEec
Q psy5892 20 SKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATG-----RAHTIVITDNEGAFTFGN 94 (340)
Q Consensus 20 ~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g-----~~~~~~lt~~g~l~~~G~ 94 (340)
|+.|+ +|.+-...--..|..... ......+.+.. +.+|+.+..- ..+.+++|++|.+--.-.
T Consensus 64 T~~G~--~~~~~~~eip~~~r~a~G--------~~i~~ll~L~~---~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l 130 (370)
T 3l6v_A 64 TSSGK--VFWLPVHQLPEAGSNARG--------RPIINWIPLES---GERVQAVLPVREYADNRYVFMATRNGTVKKTPL 130 (370)
T ss_dssp ETTSE--EEEEEGGGSCBCCTTSCC--------EEGGGSCCCCT---TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred eCCCe--EEEEEHHHCcCCCcccCC--------cCHhhccCCCC---CCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEH
Confidence 89999 888865543333332211 00111223333 7788888764 346888899998877764
Q ss_pred CCCCCccCCCCCCccccCCceeccccccCCCceEE--EEccCCeeEEEEcCCcEEEEEeCCCCCCCC
Q psy5892 95 NSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMD--AVCGQDHTLFLTESGKVYSCGWGADGQTGL 159 (340)
Q Consensus 95 n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~--i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~ 159 (340)
..+-.... .-.....+.. +..++. +..+.+..+++|++|++..+-...-..+|.
T Consensus 131 ~e~~~~~~---------~G~~ai~L~~--~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR 186 (370)
T 3l6v_A 131 SEFAFRLA---------RGKIAINLDE--GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 186 (370)
T ss_dssp GGGCSCCT---------TCEESSCCCT--TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred HHhhcccC---------CceEEEEeCC--CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCC
Confidence 44321100 0001111111 334433 335667899999999999887655554444
No 58
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=56.75 E-value=1.4e+02 Score=28.59 Aligned_cols=149 Identities=9% Similarity=0.013 Sum_probs=75.4
Q ss_pred CCCeEEEEeCCC--eEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccC---CeeEEEE
Q psy5892 67 STQIKHLATGRA--HTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQ---DHTLFLT 141 (340)
Q Consensus 67 ~~~i~~i~~g~~--~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~---~~~~~lt 141 (340)
...|..++.... ..+.-+.+|.|..|-..... .....+... ...|..++-.. ...+.-.
T Consensus 97 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~---------------~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---------------ALEQTFEGH-EHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS---------------EEEEEEECC-SSCEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc---------------eEEEEEcCC-CCcEEEEEEEcCCCCEEEEEe
Confidence 345666665544 34444677888888543210 111111111 24566665433 3455567
Q ss_pred cCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEe----cCcEEEEEeCCCCEEEEeCCCCCCCCCCCccc
Q psy5892 142 ESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSS----AVDCVLAVSDKGDVFGWGNSEYGQISESEMQI 217 (340)
Q Consensus 142 ~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~----g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~ 217 (340)
.+|.|+.|-...... ...+. ......+..++. .....++...+|.|..|-....
T Consensus 161 ~dg~v~vwd~~~~~~-----------~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---------- 218 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTP-----------NFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---------- 218 (814)
T ss_dssp TTSEEEEEETTCSSC-----------SEEEE-CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT----------
T ss_pred CCCeEEEEECCCCcc-----------eeEEe-cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC----------
Confidence 789999997432110 01111 011123333333 3455666678899999964321
Q ss_pred cCceEeecccCcccEEEEEecCc--eEEEEcCCCcEEEEc
Q psy5892 218 STPRVLSQCKGVSRIVDVASGGS--ACTMLNDEGLVYSWG 255 (340)
Q Consensus 218 ~~p~~i~~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G 255 (340)
.....+. .....|..++...+ ..+....+|.|..|-
T Consensus 219 ~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd 256 (814)
T 3mkq_A 219 SCVATLE--GHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (814)
T ss_dssp EEEEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred cEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 1111111 11345666665543 455556789999995
No 59
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=55.03 E-value=24 Score=29.76 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=11.7
Q ss_pred CceEEEEcCCCcEEEEc
Q psy5892 239 GSACTMLNDEGLVYSWG 255 (340)
Q Consensus 239 ~~~~~~lt~~g~v~~~G 255 (340)
..|+++. .+++||++|
T Consensus 150 ~~~~~~~-~~~~iyv~G 165 (318)
T 2woz_A 150 YGHNVIS-HNGMIYCLG 165 (318)
T ss_dssp ESCEEEE-ETTEEEEEC
T ss_pred cccEEEE-ECCEEEEEc
Confidence 3455555 588999998
No 60
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=54.81 E-value=1.9e+02 Score=29.52 Aligned_cols=196 Identities=11% Similarity=0.013 Sum_probs=89.6
Q ss_pred CeEEEEeCC--CeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc-CCeeEEEEcCCc
Q psy5892 69 QIKHLATGR--AHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG-QDHTLFLTESGK 145 (340)
Q Consensus 69 ~i~~i~~g~--~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g-~~~~~~lt~~g~ 145 (340)
.|..++... ...+.-..||.|..|-.... ++ . .+... ...|..++.. ....++...+|.
T Consensus 1005 ~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~-~~---------------~-~~~~~-~~~v~~~~~~~~~~l~~~~~dg~ 1066 (1249)
T 3sfz_A 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTG-DY---------------V-FLQAH-QETVKDFRLLQDSRLLSWSFDGT 1066 (1249)
T ss_dssp CCCCEEECSSSSCEEEECSSSBEEEEETTTT-EE---------------E-CCBCC-SSCEEEEEECSSSEEEEEESSSE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCC-ce---------------E-EEecC-CCcEEEEEEcCCCcEEEEECCCc
Confidence 444444433 34444557888888865321 11 0 11111 2445555433 344566678899
Q ss_pred EEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEe--cCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEe
Q psy5892 146 VYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSS--AVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVL 223 (340)
Q Consensus 146 vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~--g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i 223 (340)
|+.|-......+ ..+. .....|..++. .....+.-..+|.|..|-......+. .+
T Consensus 1067 v~vwd~~~~~~~-----------~~~~--~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~----------~l 1123 (1249)
T 3sfz_A 1067 VKVWNVITGRIE-----------RDFT--CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH----------EL 1123 (1249)
T ss_dssp EEEEETTTTCCC-----------EEEE--CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSB----------CC
T ss_pred EEEEECCCCcee-----------EEEc--ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceee----------ee
Confidence 999974332110 0011 01112333332 22344455667788888543211111 01
Q ss_pred ecccCcccEEEEEecCc--eEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceE
Q psy5892 224 SQCKGVSRIVDVASGGS--ACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFG 301 (340)
Q Consensus 224 ~~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~ 301 (340)
. .....|..++...+ ..+.-..+|.|+.|-....... ....|........ .....|..++...+...
T Consensus 1124 ~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~-----~~~~~v~~l~fs~dg~~ 1192 (1249)
T 3sfz_A 1124 K--GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL----HSCAPISVEEGTA-----THGGWVTDVCFSPDSKT 1192 (1249)
T ss_dssp C--CCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCC----CCCCCCC------------CCSCCCEEEECTTSSC
T ss_pred c--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceE----EEecccccccccc-----ccCceEEEEEECCCCCE
Confidence 1 11335666666543 3444567888888852110000 0000111000000 01245666666555555
Q ss_pred EEecCCcEEEEeCCC
Q psy5892 302 AITNFGHLYMWGKNQ 316 (340)
Q Consensus 302 ~lt~~g~vy~wG~n~ 316 (340)
+++.+|.|..|-...
T Consensus 1193 l~s~~g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1193 LVSAGGYLKWWNVAT 1207 (1249)
T ss_dssp EEEESSSEEEBCSSS
T ss_pred EEECCCeEEEEECCC
Confidence 555568999997554
No 61
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=53.94 E-value=1.1e+02 Score=26.59 Aligned_cols=158 Identities=8% Similarity=0.031 Sum_probs=76.5
Q ss_pred CCCeEEEEeCC--CeEEEEeCCCcEEEEecC--CCCCccCCCCCCccccCCceecccc--cc-CCCceEEEEc----cCC
Q psy5892 67 STQIKHLATGR--AHTIVITDNEGAFTFGNN--SFGQCGRGIVQEEDYQGKWFCHNIA--DL-EGEKIMDAVC----GQD 135 (340)
Q Consensus 67 ~~~i~~i~~g~--~~~~~lt~~g~l~~~G~n--~~gqlg~~~~~~~~~~~~~~~~~~~--~~-~~~~i~~i~~----g~~ 135 (340)
...|..|+... ...+.-..||.|..|-.. ..|++-.. ........+. .. ....+..+.. ...
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKF-------LNCECIRKINLKNFGKNEYAVRMRAFVNEEKS 183 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEE-------EEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeec-------cccceeEEEEccCcccccCceEEEEEEcCCCC
Confidence 44677777654 344455678888888542 12221000 0000001110 00 1344555542 234
Q ss_pred eeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCCC
Q psy5892 136 HTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISES 213 (340)
Q Consensus 136 ~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~~ 213 (340)
..+.-+.+|.|+.|-...... ...+........|..++.. ..+.+.-..+|.|..|-...
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~------- 245 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLER-----------LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF------- 245 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCE-----------EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-------
T ss_pred EEEEEeCCCeEEEEeCCCCee-----------eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-------
Confidence 555667789999987433111 1111110012357666664 44555667889999996542
Q ss_pred CccccCceEeec--ccCcccEEEEEecC----c--eEEEEcCCCcEEEEc
Q psy5892 214 EMQISTPRVLSQ--CKGVSRIVDVASGG----S--ACTMLNDEGLVYSWG 255 (340)
Q Consensus 214 ~~~~~~p~~i~~--~~~~~~i~~i~~g~----~--~~~~lt~~g~v~~~G 255 (340)
...+.. ......|..++... + ..+.-..||.|..|-
T Consensus 246 ------~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 246 ------NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp ------TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred ------ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence 111111 12234566664332 1 344446788898885
No 62
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=52.22 E-value=98 Score=25.46 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=18.7
Q ss_pred CCceEEEecCCcEEEEeCCCCCcccCCC
Q psy5892 297 PCTFGAITNFGHLYMWGKNQYGQLGLGT 324 (340)
Q Consensus 297 ~~~~~~lt~~g~vy~wG~n~~GqLG~g~ 324 (340)
..+.+.++.+|++ .|=.++....|..+
T Consensus 243 ~~~~~~~~~~g~~-~W~~~~~~~~~~~~ 269 (276)
T 3no2_A 243 HPQLVEIDSEGKV-VWQLNDKVKFGMIS 269 (276)
T ss_dssp CCSEEEECTTSBE-EEEECCTTTSCCCC
T ss_pred CceEEEECCCCCE-EEEecCccccccee
Confidence 3468889999986 66666666666543
No 63
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=50.86 E-value=1.2e+02 Score=25.88 Aligned_cols=120 Identities=11% Similarity=0.017 Sum_probs=55.5
Q ss_pred CceEEEEccCC-eeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecc---c-ccCccEEEEEec--CcEEEEEeCC-
Q psy5892 125 EKIMDAVCGQD-HTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRG---E-IEGERIVKLSSA--VDCVLAVSDK- 196 (340)
Q Consensus 125 ~~i~~i~~g~~-~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~---~-~~~~~i~~i~~g--~~~~~~l~~~- 196 (340)
..|..++...+ ..++-..+|.|+.|-..... ....+.. . .....|..++.. ..+.++-..+
T Consensus 187 ~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~ 255 (397)
T 1sq9_A 187 QFATSVDISERGLIATGFNNGTVQISELSTLR-----------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 255 (397)
T ss_dssp CCCCEEEECTTSEEEEECTTSEEEEEETTTTE-----------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred CCceEEEECCCceEEEEeCCCcEEEEECCCCc-----------eeEEEeccccccccCCccceEEECCCCCEEEEEecCC
Confidence 44555544333 44444567889888743210 0111110 0 003356666653 3455555667
Q ss_pred --CCEEEEeCCCCCCCCC-CCccccCceEeecccCcccEEEEEec--CceEEEEcCCCcEEEEc
Q psy5892 197 --GDVFGWGNSEYGQISE-SEMQISTPRVLSQCKGVSRIVDVASG--GSACTMLNDEGLVYSWG 255 (340)
Q Consensus 197 --g~v~~wG~n~~gqlg~-~~~~~~~p~~i~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G 255 (340)
|.|..|-......+.. ..........+........|..++.. ....+.-..+|.|+.|-
T Consensus 256 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 256 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 8899987543211100 00000000000000024567777765 33455557789999994
No 64
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=47.95 E-value=1.2e+02 Score=25.10 Aligned_cols=207 Identities=10% Similarity=0.001 Sum_probs=103.8
Q ss_pred CCCeEEEEeCC--CeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEc--cCC-eeEEEE
Q psy5892 67 STQIKHLATGR--AHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVC--GQD-HTLFLT 141 (340)
Q Consensus 67 ~~~i~~i~~g~--~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--g~~-~~~~lt 141 (340)
...|..++... ...++-..+|.|+.|-...... ...+..+... ...|..++- ... ..++-.
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-------------~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-------------NVDLLQSLRY-KHPLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-------------EEEEEEEEEC-SSCEEEEEEEESSSEEEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-------------cccceeeeec-CCceEEEEECCCCCcEEEEEc
Confidence 44677766543 3444556788888886432210 0001111111 245555553 344 566667
Q ss_pred cCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec-CcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCc
Q psy5892 142 ESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA-VDCVLAVSDKGDVFGWGNSEYGQISESEMQISTP 220 (340)
Q Consensus 142 ~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g-~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p 220 (340)
.+|.|+.|-....+++ ..+........|..++.. ....+....+|.|..|-......-. .....
T Consensus 77 ~dg~i~~wd~~~~~~~-----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~ 141 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSF-----------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV----IAVKN 141 (342)
T ss_dssp TTSCEEEECSSSSSSE-----------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC----EEEEE
T ss_pred CCCeEEEEEeccCCce-----------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccccc----ccccC
Confidence 7899999864111111 111110022346665554 5666777889999999543210000 00000
Q ss_pred eEeecccCcccEEEEEecCceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccC---
Q psy5892 221 RVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGP--- 297 (340)
Q Consensus 221 ~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~--- 297 (340)
..+..+.....|..++...+..++.+.+|.|+.|-.... .......... .....|..++.-.
T Consensus 142 ~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~--------~~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 142 LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC-------EDDNGTIEES--------GLKYQIRDVALLPKEQ 206 (342)
T ss_dssp SCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCC-------TTCCCEEEEC--------SCSSCEEEEEECSGGG
T ss_pred CeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcc-------ccccceeeec--------CCCCceeEEEECCCCC
Confidence 001111124568888887777777788999999952110 0000111111 0124566666543
Q ss_pred CceEEEecCCcEEEEeCCCC
Q psy5892 298 CTFGAITNFGHLYMWGKNQY 317 (340)
Q Consensus 298 ~~~~~lt~~g~vy~wG~n~~ 317 (340)
...++-..+|.+..|-....
T Consensus 207 ~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 207 EGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp CEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEecCCcEEEEEEcCC
Confidence 44555678888888876543
No 65
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=46.33 E-value=1.5e+02 Score=25.80 Aligned_cols=193 Identities=12% Similarity=0.057 Sum_probs=87.9
Q ss_pred CCCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEE--ccCCeeEEEEcCC
Q psy5892 67 STQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAV--CGQDHTLFLTESG 144 (340)
Q Consensus 67 ~~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~--~g~~~~~~lt~~g 144 (340)
...+..++......+.-..++.++.|-...... ....+..- ...+..+. ......+....||
T Consensus 189 ~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~---------------~~~~~~~h-~~~~~~~~~~~~g~~l~s~~~D~ 252 (420)
T 4gga_A 189 SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH---------------HVATLSGH-SQEVCGLRWAPDGRHLASGGNDN 252 (420)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEETTSSSC---------------EEEEEECC-SSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceEEEeeCCCEEEEEeCCCceeEeeecccce---------------eeEEeccc-ccceeeeeecCCCCeeeeeeccc
Confidence 446666666555555556677777775332111 11111111 12333333 3344556667788
Q ss_pred cEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCc--EEEEE---eCCCCEEEEeCCCCCCCCCCCccccC
Q psy5892 145 KVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVD--CVLAV---SDKGDVFGWGNSEYGQISESEMQIST 219 (340)
Q Consensus 145 ~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~--~~~~l---~~~g~v~~wG~n~~gqlg~~~~~~~~ 219 (340)
.+..|-...... . ..+.... ......|..++.... ..+++ ..|+.|..|-....
T Consensus 253 ~v~i~~~~~~~~-~-------~~~~~~~-~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~------------ 311 (420)
T 4gga_A 253 LVNVWPSAPGEG-G-------WVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------------ 311 (420)
T ss_dssp CEEEEESSCCSS-C-------SCCSEEE-CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT------------
T ss_pred cceEEeeccccc-c-------ceeeeee-cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc------------
Confidence 888887433111 0 0011111 011123555544322 22222 36788888864321
Q ss_pred ceEeecccCcccEEEEEecCce-EEEE---cCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEc
Q psy5892 220 PRVLSQCKGVSRIVDVASGGSA-CTML---NDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIA 295 (340)
Q Consensus 220 p~~i~~~~~~~~i~~i~~g~~~-~~~l---t~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~ 295 (340)
..+........+..+...... .++. ..+|.|+.|-.. ....+.. +.++ ...|..++.
T Consensus 312 -~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~------------~~~~v~~-l~gH-----~~~V~~l~~ 372 (420)
T 4gga_A 312 -ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP------------TMAKVAE-LKGH-----TSRVLSLTM 372 (420)
T ss_dssp -EEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT------------TCCEEEE-ECCC-----SSCEEEEEE
T ss_pred -ccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECC------------CCcEEEE-EcCC-----CCCEEEEEE
Confidence 111111123345544443222 2222 268899999421 1111211 1111 246878776
Q ss_pred cCCce--EEEecCCcEEEEeCC
Q psy5892 296 GPCTF--GAITNFGHLYMWGKN 315 (340)
Q Consensus 296 G~~~~--~~lt~~g~vy~wG~n 315 (340)
..+.. +--..||.|..|=-.
T Consensus 373 spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 373 SPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp CTTSSCEEEEETTTEEEEECCS
T ss_pred cCCCCEEEEEecCCeEEEEECC
Confidence 54433 334578899999543
No 66
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=46.20 E-value=1.4e+02 Score=25.36 Aligned_cols=157 Identities=8% Similarity=0.048 Sum_probs=81.3
Q ss_pred CCCeEEEEeCC---CeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccC-----CeeE
Q psy5892 67 STQIKHLATGR---AHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQ-----DHTL 138 (340)
Q Consensus 67 ~~~i~~i~~g~---~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~-----~~~~ 138 (340)
...|..++... ...+.-..+|.|..|-.... + ....+. . ...+..+.... ...+
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~---------------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 160 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL-Q---------------TADVFN-F-EETVYSHHMSPVSTKHCLVA 160 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT-E---------------EEEEEE-C-SSCEEEEEECSSCSSCCEEE
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC-c---------------cceecc-C-CCceeeeEeecCCCCCcEEE
Confidence 55788887643 45566677899999965321 1 111111 1 23344443322 2455
Q ss_pred EEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCc---EEEEEeCCCCEEEEeCCCCCCCCC--C
Q psy5892 139 FLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVD---CVLAVSDKGDVFGWGNSEYGQISE--S 213 (340)
Q Consensus 139 ~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~---~~~~l~~~g~v~~wG~n~~gqlg~--~ 213 (340)
+-..+|.|+.|-......+ ..+. .....|..++.... ..+.-..+|.|..|-.......-. .
T Consensus 161 ~~~~~~~v~~~d~~~~~~~-----------~~~~--~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~ 227 (408)
T 4a11_B 161 VGTRGPKVQLCDLKSGSCS-----------HILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227 (408)
T ss_dssp EEESSSSEEEEESSSSCCC-----------EEEC--CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECC
T ss_pred EEcCCCeEEEEeCCCccee-----------eeec--CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccc
Confidence 5677899999975332111 1111 12235666665433 355677899999997654321111 0
Q ss_pred ---CccccCceEeecccCcccEEEEEecCc--eEEEEcCCCcEEEEc
Q psy5892 214 ---EMQISTPRVLSQCKGVSRIVDVASGGS--ACTMLNDEGLVYSWG 255 (340)
Q Consensus 214 ---~~~~~~p~~i~~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G 255 (340)
......+.. ........|..++...+ +.+....+|.|..|-
T Consensus 228 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 228 QHNGKKSQAVES-ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp TTTTCSCCCTTT-SSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccccccceeecc-ccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 000000000 00112446777776543 566667899999996
No 67
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=46.15 E-value=1.4e+02 Score=25.59 Aligned_cols=155 Identities=11% Similarity=0.044 Sum_probs=81.7
Q ss_pred EEEeCCCeEEEE---eCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc---CCeeEEEEcCCc
Q psy5892 72 HLATGRAHTIVI---TDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG---QDHTLFLTESGK 145 (340)
Q Consensus 72 ~i~~g~~~~~~l---t~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g---~~~~~~lt~~g~ 145 (340)
.+++...+..++ ..+|.|+.|-....|++.. ....+..- ...|..++-. ....+.-..||.
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~------------~~~~~~~h-~~~V~~~~~~p~~~~~l~s~s~dg~ 105 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK------------NVPLVCGH-TAPVLDIAWCPHNDNVIASGSEDCT 105 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT------------TCCCBCCC-SSCEEEEEECTTCTTEEEEEETTSE
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC------------CCceEecC-CCCEEEEEeCCCCCCEEEEEeCCCe
Confidence 466666666655 4578999998765543210 01111111 3556666653 345555577899
Q ss_pred EEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecC---cEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceE
Q psy5892 146 VYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAV---DCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRV 222 (340)
Q Consensus 146 vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~---~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~ 222 (340)
|..|-........ ....+.... ..-...|..++... +..+.-..+|.|..|-..... ....
T Consensus 106 v~vw~~~~~~~~~-----~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~----------~~~~ 169 (402)
T 2aq5_A 106 VMVWEIPDGGLVL-----PLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA----------AVLT 169 (402)
T ss_dssp EEEEECCTTCCSS-----CBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE----------EEEE
T ss_pred EEEEEccCCCCcc-----ccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC----------ccEE
Confidence 9999755432211 001111111 11223566666653 345556789999999654210 0111
Q ss_pred eecccCcccEEEEEec--CceEEEEcCCCcEEEEc
Q psy5892 223 LSQCKGVSRIVDVASG--GSACTMLNDEGLVYSWG 255 (340)
Q Consensus 223 i~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G 255 (340)
+........|..++.. ....+....+|.|..|-
T Consensus 170 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 204 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE 204 (402)
T ss_dssp ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEE
T ss_pred EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEe
Confidence 1001124467777664 33455556789999995
No 68
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=45.23 E-value=92 Score=23.12 Aligned_cols=108 Identities=14% Similarity=0.047 Sum_probs=60.1
Q ss_pred CCCeEEEEeCC-CeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc-CCeeEEEEcCC
Q psy5892 67 STQIKHLATGR-AHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG-QDHTLFLTESG 144 (340)
Q Consensus 67 ~~~i~~i~~g~-~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g-~~~~~~lt~~g 144 (340)
.....++.|-. .+.+-|..||.|-+-..... ......+..+. ..++.|.|- ....+++..+|
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~------------~~s~lei~sv~----~G~V~L~g~~sg~yL~mn~~G 92 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRDRSD------------THIQFQISPEG----NGEVLLKSTETGQYLRINPDG 92 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECCTTC------------GGGCEEEEEEE----TTEEEEEETTTTEEEEECTTS
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecCCCC------------CceEEEEEEcc----CCEEEEEEecCCEEEeECCCC
Confidence 55788999987 67788899999987643211 00111122221 346777754 56788999999
Q ss_pred cEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEe-cCcEEEEEeCCCCEEEE
Q psy5892 145 KVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSS-AVDCVLAVSDKGDVFGW 202 (340)
Q Consensus 145 ~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~-g~~~~~~l~~~g~v~~w 202 (340)
+||.-- ... ......++. ..+.-.+.|.. -....+|++.+|++|.-
T Consensus 93 ~l~Gs~--~~t--------~ecsflEi~--~en~y~v~i~g~~sg~YLamnk~Grlygs 139 (142)
T 3p6j_A 93 TVDGTR--DRS--------DTHIQFQIS--PEGNGEVLLKSTETGQYLRINPDGTVDGT 139 (142)
T ss_dssp BEEEEC--CTT--------CGGGCEEEE--ECSTTCEEEEETTTCCEEEECTTSBEEEE
T ss_pred CEeecc--cCC--------CCceEEEEE--eecCcEEEEEEecCCEEEEECCCcCCccC
Confidence 999532 211 111111111 11112222222 22348899999999963
No 69
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=44.93 E-value=2.2e+02 Score=27.36 Aligned_cols=200 Identities=13% Similarity=0.112 Sum_probs=101.0
Q ss_pred CCCeEEEEeCCC--eEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc----CCeeEEE
Q psy5892 67 STQIKHLATGRA--HTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG----QDHTLFL 140 (340)
Q Consensus 67 ~~~i~~i~~g~~--~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g----~~~~~~l 140 (340)
...|..++...+ ..+.-..||.|..|-.... .......+..- ...|..++-. ....+.-
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--------------~~~~~~~l~~h-~~~V~~l~~s~~~~~~~l~s~ 73 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------THKLIDTLTGH-EGPVWRVDWAHPKFGTILASC 73 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETT--------------EEEEEEEECCC-SSCEEEEEECCTTSCSEEEEE
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCC--------------CCccceeccCC-cCceEEEEecCCCCCCEEEEE
Confidence 335666655433 3344457888888853210 00111111111 3567777653 3456666
Q ss_pred EcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec----CcEEEEEeCCCCEEEEeCCCCCCCCCCCcc
Q psy5892 141 TESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA----VDCVLAVSDKGDVFGWGNSEYGQISESEMQ 216 (340)
Q Consensus 141 t~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g----~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~ 216 (340)
..||.|+.|-..... ..+.... ......|..++.. ....+....+|.|..|-.......
T Consensus 74 s~Dg~I~vwd~~~~~----------~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~------ 136 (753)
T 3jro_A 74 SYDGKVLIWKEENGR----------WSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT------ 136 (753)
T ss_dssp ETTSCEEEEEEETTE----------EEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC------
T ss_pred eCCCeEEEEECCCCc----------ccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc------
Confidence 789999999743310 1111111 1123357777665 446677788999999975432111
Q ss_pred ccCceEeecccCcccEEEEEecC---------------ceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCC
Q psy5892 217 ISTPRVLSQCKGVSRIVDVASGG---------------SACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQ 281 (340)
Q Consensus 217 ~~~p~~i~~~~~~~~i~~i~~g~---------------~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~ 281 (340)
....+. .....|..+.... ...+.-..+|.|..|-.. ....+......+..
T Consensus 137 --~~~~~~--~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~---------~~~~~~~~~~~~~~- 202 (753)
T 3jro_A 137 --SPIIID--AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN---------SDAQTYVLESTLEG- 202 (753)
T ss_dssp --CCEEEE--CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE---------TTTTEEEEEEEECC-
T ss_pred --ceeEee--cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc---------CCcccceeeeeecC-
Confidence 111111 1134566665543 445666779999999411 00001011111111
Q ss_pred cccCCCCCeEEEEccCC-----ceEEEecCCcEEEEeCCC
Q psy5892 282 HQFNPKSKVESLIAGPC-----TFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 282 ~~~~~~~~i~~i~~G~~-----~~~~lt~~g~vy~wG~n~ 316 (340)
....|..++.... ..+.-..+|.|..|-...
T Consensus 203 ----h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 203 ----HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ----CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ----CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 1346777776544 344456788898886544
No 70
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=44.76 E-value=1.3e+02 Score=24.84 Aligned_cols=146 Identities=7% Similarity=-0.046 Sum_probs=73.8
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEE------ccCCeeEEEEcCCcEEEEE
Q psy5892 77 RAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAV------CGQDHTLFLTESGKVYSCG 150 (340)
Q Consensus 77 ~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~------~g~~~~~~lt~~g~vy~wG 150 (340)
....+.-..+|.|..|-...... ...............+..++ ......++-..+|.|+.|-
T Consensus 129 ~~~l~~~~~d~~i~vwd~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d 196 (357)
T 3i2n_A 129 APEIVTGSRDGTVKVWDPRQKDD------------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFD 196 (357)
T ss_dssp CCEEEEEETTSCEEEECTTSCSS------------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEE
T ss_pred ccEEEEEeCCCeEEEEeCCCCCC------------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEE
Confidence 33555556788999986543210 00111111111123566655 3444555567789999987
Q ss_pred eCCCCCCCCCCCCCeeeceeecccccCccEEEEEec-----CcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeec
Q psy5892 151 WGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA-----VDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQ 225 (340)
Q Consensus 151 ~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g-----~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~ 225 (340)
..... +.... .....|..++.. ....++-..+|.|+.|-......+. ..+ ....
T Consensus 197 ~~~~~------------~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~-~~~~ 255 (357)
T 3i2n_A 197 LRNMA------------LRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK------GFA-SVSE 255 (357)
T ss_dssp TTTTE------------EEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT------EEE-EEEE
T ss_pred CccCc------------eeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc------cee-eecc
Confidence 43211 01111 112356666654 3556667788999999643211100 000 0011
Q ss_pred ccCcccEEEEEecCc---eEEEEcCCCcEEEEc
Q psy5892 226 CKGVSRIVDVASGGS---ACTMLNDEGLVYSWG 255 (340)
Q Consensus 226 ~~~~~~i~~i~~g~~---~~~~lt~~g~v~~~G 255 (340)
......|..++...+ ..+.-..+|.|..|-
T Consensus 256 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 256 KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 112456777777554 344557889999996
No 71
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=42.37 E-value=94 Score=25.60 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=11.7
Q ss_pred CCeeEEEEcCCcEEEEE
Q psy5892 134 QDHTLFLTESGKVYSCG 150 (340)
Q Consensus 134 ~~~~~~lt~~g~vy~wG 150 (340)
..|++++. +++||++|
T Consensus 104 ~~~~~~~~-~~~lyv~G 119 (301)
T 2vpj_A 104 GLAGATTL-GDMIYVSG 119 (301)
T ss_dssp BSCEEEEE-TTEEEEEC
T ss_pred cceeEEEE-CCEEEEEc
Confidence 44555554 78999998
No 72
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=41.93 E-value=1.6e+02 Score=24.89 Aligned_cols=220 Identities=13% Similarity=0.116 Sum_probs=110.0
Q ss_pred EEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEc-----cCCeeEEEEcCCc
Q psy5892 71 KHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVC-----GQDHTLFLTESGK 145 (340)
Q Consensus 71 ~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~-----g~~~~~~lt~~g~ 145 (340)
..++.+..+.++.|+.|++|.+-....-..+... .. .+....++--++++|+.+.. ...+.+++|++|.
T Consensus 47 ~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a---~G---~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~ 120 (307)
T 1zi0_A 47 LLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA---RG---RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT 120 (307)
T ss_dssp EEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS---CC---EEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred EEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC---CC---eEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCe
Confidence 3356677789999999999999865432222110 00 01111222123567777754 2335778899998
Q ss_pred EEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEE--ecCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEe
Q psy5892 146 VYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLS--SAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVL 223 (340)
Q Consensus 146 vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~--~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i 223 (340)
+.-.-..++..... .-..-..+. ++..++.+. .+....+++|++|+++-+-..+--.+|...... +.+
T Consensus 121 ~Krt~l~e~~~~~r----~G~~~i~l~---~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv---~~i 190 (307)
T 1zi0_A 121 VKKTVLTEFNRLRT----AGKVAIKLV---DGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV---RGI 190 (307)
T ss_dssp EEEEEGGGGTTCCT----TCEESSCCC---TTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE---ECC
T ss_pred EEEEEHHHhhcccc----CCeEEEEEC---CCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe---EeE
Confidence 87654333221110 000111111 223444433 356688999999999999766554444422211 112
Q ss_pred ecccCcccEEEEEec--CceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEc--cCCc
Q psy5892 224 SQCKGVSRIVDVASG--GSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIA--GPCT 299 (340)
Q Consensus 224 ~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~--G~~~ 299 (340)
.. ...+.|+.+..- ....+++|++|.+--.--.++-... .-..-.....+. ..+..++.+.. .+..
T Consensus 191 ~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~---Rg~kG~~~~~~~------~~~~~lv~~~~v~~~~~ 260 (307)
T 1zi0_A 191 RL-GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKS---RATKGVISIKVT------ERNGLVVGAVQVDDCDQ 260 (307)
T ss_dssp CC-CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCC---TTSCCEESSCCC------TTTCSEEEEEEECTTCE
T ss_pred Ee-CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCC---CCCCCEEeeEec------CCCCeEEEEEEeCCCce
Confidence 22 345677776542 2345666777764333211111000 000001111100 11245555443 5566
Q ss_pred eEEEecCCcEEEEeCCC
Q psy5892 300 FGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 300 ~~~lt~~g~vy~wG~n~ 316 (340)
.+++|++|.+.-.-.++
T Consensus 261 l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 261 IMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEEESSCCEEEEEGGG
T ss_pred EEEEcCCCcEEEEeccc
Confidence 88999999987654443
No 73
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=39.44 E-value=1.7e+02 Score=24.65 Aligned_cols=218 Identities=7% Similarity=-0.072 Sum_probs=103.8
Q ss_pred CCCeEEEEeCC---CeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEc---cCCeeEEE
Q psy5892 67 STQIKHLATGR---AHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVC---GQDHTLFL 140 (340)
Q Consensus 67 ~~~i~~i~~g~---~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~---g~~~~~~l 140 (340)
...|..++... ...+.-..||.|..|-.............. ...............|..++. +....+.-
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA----VCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE----EEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc----cccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 56788888765 444455678999999754322111000000 000000000112356776664 33456666
Q ss_pred EcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecC-----cEEEEEeCCCCEEEEeCCCCCCCCCCCc
Q psy5892 141 TESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAV-----DCVLAVSDKGDVFGWGNSEYGQISESEM 215 (340)
Q Consensus 141 t~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~-----~~~~~l~~~g~v~~wG~n~~gqlg~~~~ 215 (340)
..+|.|..|-...... ...+. ....+..+.... ...++-..+|.|+.|-......
T Consensus 119 ~~d~~i~iwd~~~~~~-----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------ 178 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQT-----------ADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC------ 178 (408)
T ss_dssp ETTSEEEEEETTTTEE-----------EEEEE---CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC------
T ss_pred eCCCeEEEeeCCCCcc-----------ceecc---CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce------
Confidence 7789999996432110 00111 112344444432 2566677899999997543111
Q ss_pred cccCceEeecccCcccEEEEEecCce---EEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEE
Q psy5892 216 QISTPRVLSQCKGVSRIVDVASGGSA---CTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVES 292 (340)
Q Consensus 216 ~~~~p~~i~~~~~~~~i~~i~~g~~~---~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~ 292 (340)
...+. .....|..++...+. .+.-..+|.|..|-......................... .......|..
T Consensus 179 ----~~~~~--~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~ 250 (408)
T 4a11_B 179 ----SHILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA--NTAHNGKVNG 250 (408)
T ss_dssp ----CEEEC--CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS--SCSCSSCEEE
T ss_pred ----eeeec--CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc--cccccCceeE
Confidence 11111 113457777665332 455678999999962111100000000000000000000 0011345777
Q ss_pred EEccCC--ceEEEecCCcEEEEeCCC
Q psy5892 293 LIAGPC--TFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 293 i~~G~~--~~~~lt~~g~vy~wG~n~ 316 (340)
++.-.. +.+....+|.|..|-...
T Consensus 251 ~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 251 LCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEcCCCCEEEEecCCCeEEEEECCC
Confidence 766443 455667889999998654
No 74
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=39.11 E-value=1.8e+02 Score=24.70 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=73.4
Q ss_pred CCCeEEEEeCCC--eEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc--CCeeEEEEc
Q psy5892 67 STQIKHLATGRA--HTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG--QDHTLFLTE 142 (340)
Q Consensus 67 ~~~i~~i~~g~~--~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~~~~lt~ 142 (340)
...|..++...+ ..+.-..+|.|+.|- ..++ ....+... ...|..++-. ....+....
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~--~~~~---------------~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 169 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN--KTGA---------------LLNVLNFH-RAPIVSVKWNKDGTHIISMDV 169 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE--TTSC---------------EEEEECCC-CSCEEEEEECTTSSEEEEEET
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe--CCCC---------------eeeeccCC-CccEEEEEECCCCCEEEEEec
Confidence 336777776644 344456788898885 2221 11111111 3456666543 345566677
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCeeeceeec---ccccCccEEEEEe-cCcEEEEEeCCCCEEEEeCCCCCCCCCCCcccc
Q psy5892 143 SGKVYSCGWGADGQTGLGHLNNQETPCLVR---GEIEGERIVKLSS-AVDCVLAVSDKGDVFGWGNSEYGQISESEMQIS 218 (340)
Q Consensus 143 ~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~---~~~~~~~i~~i~~-g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~ 218 (340)
+|.|+.|-......+..-.... .....+. .......+..+.. .....++...+|.|+.|-......
T Consensus 170 d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~--------- 239 (425)
T 1r5m_A 170 ENVTILWNVISGTVMQHFELKE-TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP--------- 239 (425)
T ss_dssp TCCEEEEETTTTEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC---------
T ss_pred CCeEEEEECCCCcEEEEeeccc-cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce---------
Confidence 8999998753321110000000 0000000 0000000111111 134456667788999997553211
Q ss_pred CceEeecccCcccEEEEEec--CceEEEEcCCCcEEEEc
Q psy5892 219 TPRVLSQCKGVSRIVDVASG--GSACTMLNDEGLVYSWG 255 (340)
Q Consensus 219 ~p~~i~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G 255 (340)
...+. .....|..++.. ....+.-..+|.|+.|-
T Consensus 240 -~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 275 (425)
T 1r5m_A 240 -TGKLI--GHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275 (425)
T ss_dssp -SEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred -eeeec--cCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 11111 113456665553 33455566789999994
No 75
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=38.60 E-value=2.3e+02 Score=25.74 Aligned_cols=226 Identities=9% Similarity=-0.001 Sum_probs=0.0
Q ss_pred cceeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEe-CCCeE
Q psy5892 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLAT-GRAHT 80 (340)
Q Consensus 2 ~~i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~-g~~~~ 80 (340)
..|..++.. ....++.-+.||. |..|-... .........-..+. ...+..+.. .....
T Consensus 254 ~~v~~~~~~-~~~~l~~~~~d~~--i~~wd~~~---------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l 312 (615)
T 1pgu_A 254 GGIFALSWL-DSQKFATVGADAT--IRVWDVTT---------------SKCVQKWTLDKQQL---GNQQVGVVATGNGRI 312 (615)
T ss_dssp SCEEEEEES-SSSEEEEEETTSE--EEEEETTT---------------TEEEEEEECCTTCG---GGCEEEEEEEETTEE
T ss_pred CceEEEEEc-CCCEEEEEcCCCc--EEEEECCC---------------CcEEEEEcCCCCcc---cCceeEEEeCCCCeE
Q ss_pred EEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCC
Q psy5892 81 IVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLG 160 (340)
Q Consensus 81 ~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~ 160 (340)
++-+.+|.|+.|-.... .....+... ...|..++. .. .+.-..+|.|..|-..
T Consensus 313 ~~~~~~g~i~~~d~~~~----------------~~~~~~~~~-~~~v~~~~~-~~-l~~~~~dg~i~~w~~~-------- 365 (615)
T 1pgu_A 313 ISLSLDGTLNFYELGHD----------------EVLKTISGH-NKGITALTV-NP-LISGSYDGRIMEWSSS-------- 365 (615)
T ss_dssp EEEETTSCEEEEETTEE----------------EEEEEECCC-SSCEEEEET-TT-TEEEETTSCEEETTTT--------
T ss_pred EEEECCCCEEEEECCCC----------------cEEEEEeCC-CCCEEEEEe-cC-cEEECCCCeEEEEEch--------
Q ss_pred CCCCeeeceeecccccCccEEEEEec-CcEEEEEeCCCCEEEEeCCCCCCCCCCCcccc---------------------
Q psy5892 161 HLNNQETPCLVRGEIEGERIVKLSSA-VDCVLAVSDKGDVFGWGNSEYGQISESEMQIS--------------------- 218 (340)
Q Consensus 161 ~~~~~~~p~~~~~~~~~~~i~~i~~g-~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~--------------------- 218 (340)
.+. ......|..++.. ....+....+|.+..| +.....
T Consensus 366 ---------~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~----------~~~~~~~~~~~~~~~~s~~~~~~~~~~ 425 (615)
T 1pgu_A 366 ---------SMH-QDHSNLIVSLDNSKAQEYSSISWDDTLKVN----------GITKHEFGSQPKVASANNDGFTAVLTN 425 (615)
T ss_dssp ---------EEE-CCCCSCEEEEECCSTTCCEEEETTTEEEET----------TEEEEECSSCEEEEEECSSSEEEEEET
T ss_pred ---------hhc-CcccCceEEEEECCCcEEEEEeCCCCEEEE----------EcccCcccCCceEEEEcCCCCEEEEeC
Q ss_pred ----------CceEeecccCcccEEEEEecCceEEEEcC-CCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCC
Q psy5892 219 ----------TPRVLSQCKGVSRIVDVASGGSACTMLND-EGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPK 287 (340)
Q Consensus 219 ----------~p~~i~~~~~~~~i~~i~~g~~~~~~lt~-~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~ 287 (340)
....+........+..++......++-.. +|.|+.| ...........+... .
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~------------~~~~~~~~~~~~~~~-----~ 488 (615)
T 1pgu_A 426 DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVF------------KLSDLEVSFDLKTPL-----R 488 (615)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEE------------ETTEEEEEEECSSCC-----S
T ss_pred CCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEE------------ECCCccccccccCCc-----c
Q ss_pred CCeEEEEc--cCCceEEEecCCcEEEE
Q psy5892 288 SKVESLIA--GPCTFGAITNFGHLYMW 312 (340)
Q Consensus 288 ~~i~~i~~--G~~~~~~lt~~g~vy~w 312 (340)
..|..++. ...+.+.-..+|.|+.|
T Consensus 489 ~~v~~~~~s~~g~~l~~~~~dg~i~iw 515 (615)
T 1pgu_A 489 AKPSYISISPSETYIAAGDVMGKILLY 515 (615)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CceEEEEECCCCCEEEEcCCCCeEEEe
No 76
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=38.30 E-value=1.7e+02 Score=24.19 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=8.3
Q ss_pred cCCCCeeEEEeecC
Q psy5892 20 SKDKNLKLFGCGLN 33 (340)
Q Consensus 20 ~~dg~~~l~~~G~n 33 (340)
+.||+ +||.....
T Consensus 49 s~dg~-~l~~~~~~ 61 (353)
T 3vgz_A 49 SQQEN-ALWLATSQ 61 (353)
T ss_dssp ETTTT-EEEEEECC
T ss_pred CCCCC-EEEEEcCC
Confidence 67876 57766543
No 77
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=37.78 E-value=1.7e+02 Score=24.16 Aligned_cols=68 Identities=10% Similarity=0.020 Sum_probs=36.5
Q ss_pred ceEEEE--ccCCeeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec--CcEEEEEeCCCCEEE
Q psy5892 126 KIMDAV--CGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFG 201 (340)
Q Consensus 126 ~i~~i~--~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~ 201 (340)
.+..++ ......++-..+|.|+.|-.....+ ....+. .....|..++.. ..+.++...+|.|+.
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 244 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE----------YVDSID--LHEKSISDMQFSPDLTYFITSSRDTNSFL 244 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTTTE----------EEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE----------eEEEEe--cCCCceeEEEECCCCCEEEEecCCceEEE
Confidence 444444 3334555667788999887432111 111111 122356666553 344556667888999
Q ss_pred EeCC
Q psy5892 202 WGNS 205 (340)
Q Consensus 202 wG~n 205 (340)
|-..
T Consensus 245 ~d~~ 248 (369)
T 3zwl_B 245 VDVS 248 (369)
T ss_dssp EETT
T ss_pred EECC
Confidence 8643
No 78
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=35.77 E-value=2.1e+02 Score=24.65 Aligned_cols=111 Identities=9% Similarity=-0.032 Sum_probs=56.0
Q ss_pred CCCeEEEEeC----CCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceecccccc-CCCceEEEEcc--CCeeEE
Q psy5892 67 STQIKHLATG----RAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADL-EGEKIMDAVCG--QDHTLF 139 (340)
Q Consensus 67 ~~~i~~i~~g----~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~g--~~~~~~ 139 (340)
...+..+..- ....+.-+.+|.|+.|-.... + ....+... ....|..++.. ....+.
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~---------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s 231 (437)
T 3gre_A 168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL-E---------------RLQIIENSPRHGAVSSICIDEECCVLIL 231 (437)
T ss_dssp CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC-C---------------EEEEEECCGGGCCEEEEEECTTSCEEEE
T ss_pred ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-e---------------eeEEEccCCCCCceEEEEECCCCCEEEE
Confidence 4455555522 445555667888998865321 1 11111110 12456666543 334555
Q ss_pred EEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecC------cEEEEEeCCCCEEEEeCC
Q psy5892 140 LTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAV------DCVLAVSDKGDVFGWGNS 205 (340)
Q Consensus 140 lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~------~~~~~l~~~g~v~~wG~n 205 (340)
-+.+|.|..|-... ++ .. ..+. ......|..++... ...+.-..+|.|..|-..
T Consensus 232 ~~~dg~i~iwd~~~-~~---------~~-~~~~-~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 232 GTTRGIIDIWDIRF-NV---------LI-RSWS-FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp EETTSCEEEEETTT-TE---------EE-EEEB-CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred EcCCCeEEEEEcCC-cc---------EE-EEEe-cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 67789999987432 11 00 0000 01122466664332 134445578889999764
No 79
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=34.89 E-value=2.2e+02 Score=24.44 Aligned_cols=165 Identities=10% Similarity=0.013 Sum_probs=72.6
Q ss_pred CCCeEEEEeCCC--eEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc---CCeeEEEE
Q psy5892 67 STQIKHLATGRA--HTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG---QDHTLFLT 141 (340)
Q Consensus 67 ~~~i~~i~~g~~--~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g---~~~~~~lt 141 (340)
...|..++.... ..+.-..|+.|..|-... +++ ...+.. ...+..++.. ....+.-.
T Consensus 165 ~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~---------------~~~~~~--~~~v~~~~~~~~~~~~l~~~s 226 (393)
T 1erj_A 165 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQC---------------SLTLSI--EDGVTTVAVSPGDGKYIAAGS 226 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEE---------------EEEEEC--SSCEEEEEECSTTCCEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-Cee---------------EEEEEc--CCCcEEEEEECCCCCEEEEEc
Confidence 446666665433 344445788888885322 111 111111 1334444432 23444556
Q ss_pred cCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCCCCccccC
Q psy5892 142 ESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISESEMQIST 219 (340)
Q Consensus 142 ~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~ 219 (340)
.||.|..|-......+. ....+.... .--...|..++.. ..+.+.-..+|.|..|-................
T Consensus 227 ~d~~v~iwd~~~~~~~~-----~~~~~~~~~-~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~ 300 (393)
T 1erj_A 227 LDRAVRVWDSETGFLVE-----RLDSENESG-TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300 (393)
T ss_dssp TTSCEEEEETTTCCEEE-----EEC-------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred CCCcEEEEECCCCcEEE-----eecccccCC-CCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCC
Confidence 78889988633211000 000000000 0012246666654 334555667889999975432221110000000
Q ss_pred ceEeecccCcccEEEEEecCc--eEEEEcCCCcEEEEc
Q psy5892 220 PRVLSQCKGVSRIVDVASGGS--ACTMLNDEGLVYSWG 255 (340)
Q Consensus 220 p~~i~~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G 255 (340)
............|..++...+ +.+.-..||.|+.|-
T Consensus 301 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd 338 (393)
T 1erj_A 301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338 (393)
T ss_dssp CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred cceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 011111112345777766543 344456789999994
No 80
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=33.78 E-value=1.9e+02 Score=23.51 Aligned_cols=108 Identities=6% Similarity=-0.052 Sum_probs=52.9
Q ss_pred CeEEEEeCCC--eEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc--CCeeEEEEcCC
Q psy5892 69 QIKHLATGRA--HTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG--QDHTLFLTESG 144 (340)
Q Consensus 69 ~i~~i~~g~~--~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~~~~lt~~g 144 (340)
.|..++.... ..+.-..||.|..|-.... + ....+... ...|..++.. ....+.-..+|
T Consensus 109 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~---------------~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-K---------------CLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTC-C---------------EEEEECCC-SSCEEEEEECTTSSEEEEEETTS
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-E---------------EEEEecCC-CCcEEEEEEcCCCCEEEEEeCCC
Confidence 4555544433 3444457788888854321 1 11111111 2345555433 33455556788
Q ss_pred cEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEe--cCcEEEEEeCCCCEEEEeCC
Q psy5892 145 KVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSS--AVDCVLAVSDKGDVFGWGNS 205 (340)
Q Consensus 145 ~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~--g~~~~~~l~~~g~v~~wG~n 205 (340)
.|..|-...... . ..+. ......+..++. ...+.++-..+|.|..|-..
T Consensus 172 ~i~~wd~~~~~~----------~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 222 (312)
T 4ery_A 172 LCRIWDTASGQC----------L-KTLI-DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222 (312)
T ss_dssp CEEEEETTTCCE----------E-EEEC-CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred cEEEEECCCCce----------e-eEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 888886332110 0 0111 111223444433 34566677788999999654
No 81
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=31.75 E-value=2.7e+02 Score=24.50 Aligned_cols=98 Identities=8% Similarity=0.135 Sum_probs=60.5
Q ss_pred eEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCC
Q psy5892 127 IMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSE 206 (340)
Q Consensus 127 i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~ 206 (340)
|..++. +...+++..++.|..|--....+.. .. ... ...+.++.+.....++++.+|.|+.|-...
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~~-------~~-~~~-----~~~v~~i~~~~p~~av~~~dG~L~v~dl~~ 155 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEFR-------TV-TSF-----EKPVFQLKNVNNTLVILNSVNDLSALDLRT 155 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCEE-------EE-EEC-----SSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhccC-------cc-cee-----ecceeeEEecCCCEEEEECCCCEEEEEccC
Confidence 888888 7777777788889988744433210 00 011 123556666665677789999999996542
Q ss_pred CCCCCCCCccccCceEeecccCcccEEEEEecCceEEEEcCCCcEEEE
Q psy5892 207 YGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSW 254 (340)
Q Consensus 207 ~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~ 254 (340)
. + . ..+ ...|.+++-...-.++...||++..|
T Consensus 156 ~-~--------~--~~~-----~~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 156 K-S--------T--KQL-----AQNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp C-C--------E--EEE-----EESEEEEEECSSEEEEEETTSCEEEE
T ss_pred C-c--------c--ccc-----cCCceEEEEcCCceEEEEcCCcEEEE
Confidence 1 0 0 011 23677777766666666677776666
No 82
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=30.32 E-value=2.5e+02 Score=23.73 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=72.3
Q ss_pred CeeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCC
Q psy5892 135 DHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISE 212 (340)
Q Consensus 135 ~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~ 212 (340)
...++...+|.|+.|-......+ ..+. .....|..++.. ..+.++...+|.|+.|-....
T Consensus 218 ~~~~~~~~~g~i~~~d~~~~~~~-----------~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----- 279 (425)
T 1r5m_A 218 DKFVIPGPKGAIFVYQITEKTPT-----------GKLI--GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG----- 279 (425)
T ss_dssp TEEEEECGGGCEEEEETTCSSCS-----------EEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-----
T ss_pred CEEEEEcCCCeEEEEEcCCCcee-----------eeec--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-----
Confidence 44556677888998874432110 0111 112245555543 445666677889999964421
Q ss_pred CCccccCceEeecccCcccEEEEEecCc-eEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeE
Q psy5892 213 SEMQISTPRVLSQCKGVSRIVDVASGGS-ACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVE 291 (340)
Q Consensus 213 ~~~~~~~p~~i~~~~~~~~i~~i~~g~~-~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~ 291 (340)
.....+. .....|..++...+ ..++...+|.|+.|-.. ....+.... . ....|.
T Consensus 280 -----~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~------------~~~~~~~~~-~-----~~~~i~ 334 (425)
T 1r5m_A 280 -----NSQNCFY--GHSQSIVSASWVGDDKVISCSMDGSVRLWSLK------------QNTLLALSI-V-----DGVPIF 334 (425)
T ss_dssp -----SCSEEEC--CCSSCEEEEEEETTTEEEEEETTSEEEEEETT------------TTEEEEEEE-C-----TTCCEE
T ss_pred -----ccceEec--CCCccEEEEEECCCCEEEEEeCCCcEEEEECC------------CCcEeEecc-c-----CCccEE
Confidence 1111111 11345666666543 55566788999999421 111111110 0 124566
Q ss_pred EEEcc--CCceEEEecCCcEEEEeCCC
Q psy5892 292 SLIAG--PCTFGAITNFGHLYMWGKNQ 316 (340)
Q Consensus 292 ~i~~G--~~~~~~lt~~g~vy~wG~n~ 316 (340)
.++.- ....++-..+|.|+.|-...
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 66554 33455566789999997643
No 83
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=30.18 E-value=2.5e+02 Score=23.71 Aligned_cols=150 Identities=7% Similarity=0.007 Sum_probs=73.8
Q ss_pred CceEEEEccC--CeeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec---CcEEEEEeCCCCE
Q psy5892 125 EKIMDAVCGQ--DHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA---VDCVLAVSDKGDV 199 (340)
Q Consensus 125 ~~i~~i~~g~--~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g---~~~~~~l~~~g~v 199 (340)
..|..++... ...+.-..+|.|..|-..... ....+. .-...|..|+.. ....+....+|.|
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-----------~~~~~~--~h~~~v~~v~~s~~~~~~~~s~~~dg~v 206 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-----------VLKSYN--AHSSEVNCVAACPGKDTIFLSCGEDGRI 206 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-----------EEEEEC--CCSSCEEEEEECTTCSSCEEEEETTSCE
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-----------EEEEEc--CCCCCEEEEEEccCCCceeeeeccCCce
Confidence 4566665433 344445678889888633211 011111 112356666653 2345566788999
Q ss_pred EEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEecC---ceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecc
Q psy5892 200 FGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGG---SACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPS 276 (340)
Q Consensus 200 ~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~ 276 (340)
..|-.....+. ..+........+..++... ...+.-..++.|..|-.. .......+..
T Consensus 207 ~~wd~~~~~~~----------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~---------~~~~~~~~~~ 267 (357)
T 4g56_B 207 LLWDTRKPKPA----------TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK---------NPDSAQTSAV 267 (357)
T ss_dssp EECCTTSSSCB----------CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS---------CGGGCEEECC
T ss_pred EEEECCCCcee----------eeeeeccccccccchhhhhcccceEEEeecccceeEEECC---------CCcEeEEEec
Confidence 99954321111 0111111233466666542 223334678899988410 0011111111
Q ss_pred cccCCcccCCCCCeEEEEccC---CceEEEecCCcEEEEeCC
Q psy5892 277 TLFGQHQFNPKSKVESLIAGP---CTFGAITNFGHLYMWGKN 315 (340)
Q Consensus 277 ~~~~~~~~~~~~~i~~i~~G~---~~~~~lt~~g~vy~wG~n 315 (340)
....|..++... ...+.-.++|.|+.|-..
T Consensus 268 ---------~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 268 ---------HSQNITGLAYSYHSSPFLASISEDCTVAVLDAD 300 (357)
T ss_dssp ---------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred ---------cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC
Confidence 124566776532 233345678999999554
No 84
>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like domain, hormone/growth factor/membrane protein complex; HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1
Probab=26.58 E-value=2e+02 Score=21.36 Aligned_cols=66 Identities=11% Similarity=0.067 Sum_probs=42.1
Q ss_pred CCCeEEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEE-ccCCeeEEEEcCCc
Q psy5892 67 STQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAV-CGQDHTLFLTESGK 145 (340)
Q Consensus 67 ~~~i~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~-~g~~~~~~lt~~g~ 145 (340)
..+..++.|-..+.+.|..||+|-+...... .........+. ..++.|- .-...-+|++++|+
T Consensus 13 ~~R~~~LY~~~g~~LqI~~dG~V~Gt~~~~~------------~~s~l~~~sv~----~g~V~I~gv~s~~YLcmn~~G~ 76 (145)
T 1nun_A 13 DVRWRKLFSFTKYFLKIEKNGKVSGTKKENC------------PYSILEITSVE----IGVVAVKAINSNYYLAMNKKGK 76 (145)
T ss_dssp SSEEEEEEETTSCEEEECTTSCEEEECCSCC------------TTSCEEEEEEE----TTEEEEEETTTTEEEEECTTSB
T ss_pred cceEEEEEEcCCeEEEECCCCcEeeecCCCC------------CceeEEEEEec----CCeEEEEEcccCcEEEEcCCCC
Confidence 6688899999988999999999987644221 00111122221 2244443 44446789999999
Q ss_pred EEE
Q psy5892 146 VYS 148 (340)
Q Consensus 146 vy~ 148 (340)
||.
T Consensus 77 Lyg 79 (145)
T 1nun_A 77 LYG 79 (145)
T ss_dssp EEE
T ss_pred Eee
Confidence 996
No 85
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=26.24 E-value=3e+02 Score=23.29 Aligned_cols=204 Identities=9% Similarity=0.008 Sum_probs=95.2
Q ss_pred CCCeEEEEeC---CCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccC---CeeEEE
Q psy5892 67 STQIKHLATG---RAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQ---DHTLFL 140 (340)
Q Consensus 67 ~~~i~~i~~g---~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~---~~~~~l 140 (340)
...|..++.. ....+.-..+|.|+.|-......... .+ .......... ....|..++-.. ...+.-
T Consensus 113 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~------~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~ 184 (416)
T 2pm9_A 113 SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS------NY-TPLTPGQSMS-SVDEVISLAWNQSLAHVFASA 184 (416)
T ss_dssp SSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT------TC-CCBCCCCSCC-SSCCCCEEEECSSCTTEEEEE
T ss_pred ccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc------cc-cccccccccC-CCCCeeEEEeCCCCCcEEEEE
Confidence 3456666654 34455556788888886543210000 00 0001100111 124455555433 334444
Q ss_pred EcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccc----cCccEEEEEecC---cEEEEEeCCC---CEEEEeCCCCCCC
Q psy5892 141 TESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEI----EGERIVKLSSAV---DCVLAVSDKG---DVFGWGNSEYGQI 210 (340)
Q Consensus 141 t~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~----~~~~i~~i~~g~---~~~~~l~~~g---~v~~wG~n~~gql 210 (340)
..+|.|+.|-..... ....+.... ....|..++... ...+.-..++ .|+.|-.....+.
T Consensus 185 ~~dg~v~iwd~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~ 253 (416)
T 2pm9_A 185 GSSNFASIWDLKAKK-----------EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP 253 (416)
T ss_dssp SSSSCEEEEETTTTE-----------EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC
T ss_pred cCCCCEEEEECCCCC-----------cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC
Confidence 578889998743211 011111000 033566666643 3455555666 8888865432110
Q ss_pred CCCCccccCceEeecccCcccEEEEEec---CceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCC
Q psy5892 211 SESEMQISTPRVLSQCKGVSRIVDVASG---GSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPK 287 (340)
Q Consensus 211 g~~~~~~~~p~~i~~~~~~~~i~~i~~g---~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~ 287 (340)
-. .+. ......|..++.. ....+.-..+|.|..|-.. .......++. ..
T Consensus 254 ~~---------~~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~---------~~~~~~~~~~---------~~ 305 (416)
T 2pm9_A 254 LQ---------TLN-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE---------SAEQLSQFPA---------RG 305 (416)
T ss_dssp SB---------CCC-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS---------SCCEEEEEEC---------SS
T ss_pred cE---------Eee-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC---------CCccceeecC---------CC
Confidence 00 000 0113457777653 4456666789999999421 0000111111 01
Q ss_pred CCeEEEEccC---CceEEEecCCcEEEEeCCCC
Q psy5892 288 SKVESLIAGP---CTFGAITNFGHLYMWGKNQY 317 (340)
Q Consensus 288 ~~i~~i~~G~---~~~~~lt~~g~vy~wG~n~~ 317 (340)
..|..++... ...+.-..+|.|..|-....
T Consensus 306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 306 NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 3344555443 33444557789999986553
No 86
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=26.07 E-value=4.5e+02 Score=25.32 Aligned_cols=121 Identities=14% Similarity=0.099 Sum_probs=63.8
Q ss_pred ecCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEec--CceEEEEcCCCcEEEEcCCCCCCC
Q psy5892 185 SAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASG--GSACTMLNDEGLVYSWGYGLLGQG 262 (340)
Q Consensus 185 ~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~g~~g~~ 262 (340)
...++.+++|+.|++|.--...--.. . .........++. ...++|..+.+. ..+.++.|++|.+.-.--..+-..
T Consensus 512 ~t~d~ll~ft~~Gr~y~~~~~~lP~~-~-~~G~~i~~ll~l-~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~ 588 (716)
T 1zvu_A 512 KSNQPVVFVDSTGRSYAIDPITLPSA-R-GQGEPLTGKLTL-PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVAR 588 (716)
T ss_dssp CSSSCEEEEETTSEEEEECTTTSCCC-C----CBSTTTSCC-CTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCC
T ss_pred cCCCEEEEEecCCcEEEEEeeecccc-c-ccCeeHHhccCC-CCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhccc
Confidence 34556888999999998765432111 1 111111112222 346778887765 345677788998876532111110
Q ss_pred CCCccccCceeecccccCCcccCCCCCeEE---EEccCCceEEEecCCcEEEEeCCCCCcc
Q psy5892 263 PKVSRSMKPTLIPSTLFGQHQFNPKSKVES---LIAGPCTFGAITNFGHLYMWGKNQYGQL 320 (340)
Q Consensus 263 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~---i~~G~~~~~~lt~~g~vy~wG~n~~GqL 320 (340)
..... + .... ..+..++. +..+..+.+++|++|++..+-.++--.+
T Consensus 589 -----~~~g~-~---ai~L---~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~ 637 (716)
T 1zvu_A 589 -----NRAGK-A---LITL---PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL 637 (716)
T ss_dssp -----STTCE-E---CBCC---CTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBC
T ss_pred -----Cccce-E---EEee---CCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCcc
Confidence 00110 1 1111 11223332 2246778999999999998877654333
No 87
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=25.87 E-value=2.8e+02 Score=22.91 Aligned_cols=105 Identities=15% Similarity=0.176 Sum_probs=52.9
Q ss_pred cEEEEEecC--cEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEecC--ceEEEEcCCCcEEEE
Q psy5892 179 RIVKLSSAV--DCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGG--SACTMLNDEGLVYSW 254 (340)
Q Consensus 179 ~i~~i~~g~--~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~ 254 (340)
.|..++... ...+.-..+|.|..|-...... ...+. .....|..++... .+.+.-..||.|..|
T Consensus 208 ~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~----------~~~~~--~h~~~v~~~~~sp~~~~l~s~s~D~~v~iw 275 (321)
T 3ow8_A 208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL----------AGTLS--GHASWVLNVAFCPDDTHFVSSSSDKSVKVW 275 (321)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEETTTCCE----------EEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce----------eEEEc--CCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence 344554432 3444456778888886432110 11111 1133566666543 345555678899998
Q ss_pred cCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCC--ceEEEecCCcEEEEe
Q psy5892 255 GYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPC--TFGAITNFGHLYMWG 313 (340)
Q Consensus 255 G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~--~~~~lt~~g~vy~wG 313 (340)
-.. ....+.. +.+ ....|..++.... ..+....+|.|..|-
T Consensus 276 d~~------------~~~~~~~-~~~-----h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 276 DVG------------TRTCVHT-FFD-----HQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp ETT------------TTEEEEE-ECC-----CSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred eCC------------CCEEEEE-EcC-----CCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 421 1111111 111 1245666665433 344456788888884
No 88
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=25.53 E-value=2e+02 Score=21.19 Aligned_cols=68 Identities=21% Similarity=0.137 Sum_probs=42.8
Q ss_pred cCccEEEEEecC-cEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEec-CceEEEEcCCCcEEE
Q psy5892 176 EGERIVKLSSAV-DCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASG-GSACTMLNDEGLVYS 253 (340)
Q Consensus 176 ~~~~i~~i~~g~-~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~g-~~~~~~lt~~g~v~~ 253 (340)
+.....++-|-. .+.+.+..||.|=...... + ....-..... ...++.|.|- ..+.+++..+|.||.
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~------~--~~s~lei~sv---~~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRS------D--THIQFQISPE---GNGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTT------C--GGGCEEEEEE---ETTEEEEEETTTTEEEEECTTSBEEE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCC------C--CceEEEEEEc---cCCEEEEEEecCCEEEeECCCCCEee
Confidence 344677777865 6778889999998764321 1 1111111111 2357788875 567788899999996
Q ss_pred E
Q psy5892 254 W 254 (340)
Q Consensus 254 ~ 254 (340)
-
T Consensus 97 s 97 (142)
T 3p6j_A 97 T 97 (142)
T ss_dssp E
T ss_pred c
Confidence 5
No 89
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=24.45 E-value=2.9e+02 Score=22.64 Aligned_cols=161 Identities=9% Similarity=0.011 Sum_probs=84.1
Q ss_pred CCCeEEEEeCCC------eEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc---CCee
Q psy5892 67 STQIKHLATGRA------HTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG---QDHT 137 (340)
Q Consensus 67 ~~~i~~i~~g~~------~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g---~~~~ 137 (340)
...|..++.... ..+.-..+|.|..|-.... + ....+... ...|..++.. ....
T Consensus 69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~---------------~~~~~~~~-~~~i~~~~~~~~~~~~l 131 (366)
T 3k26_A 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-Q---------------CIKHYVGH-GNAINELKFHPRDPNLL 131 (366)
T ss_dssp TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-C---------------EEEEEESC-CSCEEEEEECSSCTTEE
T ss_pred CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-e---------------EeeeecCC-CCcEEEEEECCCCCCEE
Confidence 446666666544 4455567889999854321 1 11112211 3567766653 3455
Q ss_pred EEEEcCCcEEEEEeCCCCCCCCCCCCCeeeceeec-ccccCccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCC--
Q psy5892 138 LFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVR-GEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISE-- 212 (340)
Q Consensus 138 ~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~-~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~-- 212 (340)
+.-..+|.|+.|-..... ....+. .......|..++.. ..+.+....+|.|..|-......+..
T Consensus 132 ~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 200 (366)
T 3k26_A 132 LSVSKDHALRLWNIQTDT-----------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200 (366)
T ss_dssp EEEETTSCEEEEETTTTE-----------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHH
T ss_pred EEEeCCCeEEEEEeecCe-----------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccc
Confidence 666778999999743211 011110 01123357777654 44566677899999997643211100
Q ss_pred --------------CCccccCceEeecccCcccEEEEEecCceEEEEcCCCcEEEEc
Q psy5892 213 --------------SEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWG 255 (340)
Q Consensus 213 --------------~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G 255 (340)
.......|...........|..++......+.-..+|.|..|-
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd 257 (366)
T 3k26_A 201 ESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWK 257 (366)
T ss_dssp HHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEE
T ss_pred eeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEe
Confidence 0000011111111112345666665566777778899999996
No 90
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=24.35 E-value=2.9e+02 Score=22.53 Aligned_cols=119 Identities=12% Similarity=0.105 Sum_probs=65.5
Q ss_pred CceEEE--EccCCeeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeece--eecccccCccEEEEEec--CcEEEEEeCCCC
Q psy5892 125 EKIMDA--VCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPC--LVRGEIEGERIVKLSSA--VDCVLAVSDKGD 198 (340)
Q Consensus 125 ~~i~~i--~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~--~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~ 198 (340)
+.++.+ +...++.+++|+.|++|..--..- -.. ...-.|. .+. ..+++.|+.+... ..+.+++|++|.
T Consensus 33 D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~el---p~~--r~~G~~i~~~i~-L~~~e~Iv~~~~~~~~~~lll~T~~G~ 106 (256)
T 1zvt_A 33 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL---PSA--RGQGEPLTGKLT-LPPGATVDHMLMESDDQKLLMASDAGY 106 (256)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECGGGS---CCS--SSCCEEGGGTCC-CCTTCCEEEEECCCTTCEEEEEBTTSE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHC---CCc--CCCCeEeeeeec-CCCCCEEEEEEEeCCCCEEEEEeCCCe
Confidence 444443 455667899999999998765432 111 1111121 222 2245678877663 445778899998
Q ss_pred EEEEeCCCCCCCCCCCccccCceEeecccCcccEEEE-E--ecCceEEEEcCCCcEEEEc
Q psy5892 199 VFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDV-A--SGGSACTMLNDEGLVYSWG 255 (340)
Q Consensus 199 v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i-~--~g~~~~~~lt~~g~v~~~G 255 (340)
+.-.-..++-.... .-..+-.+.+...+..+ . .+.+..+++|++|.+.-+-
T Consensus 107 ~Kr~~~~e~~~~~r------~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 107 GFVCTFNDLVARNR------AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp EEEEEGGGGCCCST------TCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred EEEeEHHHhcccCc------CceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 88776544421111 00011111122233332 2 2567888999999998875
No 91
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=23.71 E-value=3.3e+02 Score=22.93 Aligned_cols=193 Identities=8% Similarity=-0.029 Sum_probs=96.3
Q ss_pred CCCeEEEEeCCCe--EEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc---CCeeEEEE
Q psy5892 67 STQIKHLATGRAH--TIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG---QDHTLFLT 141 (340)
Q Consensus 67 ~~~i~~i~~g~~~--~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g---~~~~~~lt 141 (340)
...|..|+...+. .+.-..+|.|..|-.... .....+..- ...|..++.. ....+.-.
T Consensus 139 ~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~----------------~~~~~~~~h-~~~v~~v~~s~~~~~~~~s~~ 201 (357)
T 4g56_B 139 DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK----------------AVLKSYNAH-SSEVNCVAACPGKDTIFLSCG 201 (357)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTT----------------EEEEEECCC-SSCEEEEEECTTCSSCEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC----------------cEEEEEcCC-CCCEEEEEEccCCCceeeeec
Confidence 4467777665443 333457888888854321 111112111 3456666543 23445567
Q ss_pred cCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec---CcEEEEEeCCCCEEEEeCCCCCCCCCCCcccc
Q psy5892 142 ESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA---VDCVLAVSDKGDVFGWGNSEYGQISESEMQIS 218 (340)
Q Consensus 142 ~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g---~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~ 218 (340)
.||.|..|-......+ ..+........+..++.. ....++-..++.|..|-.... .
T Consensus 202 ~dg~v~~wd~~~~~~~-----------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~----------~ 260 (357)
T 4g56_B 202 EDGRILLWDTRKPKPA-----------TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP----------D 260 (357)
T ss_dssp TTSCEEECCTTSSSCB-----------CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG----------G
T ss_pred cCCceEEEECCCCcee-----------eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC----------c
Confidence 7899999853221110 001101122346666653 233444568889999964321 1
Q ss_pred CceEeecccCcccEEEEEecC---ceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEc
Q psy5892 219 TPRVLSQCKGVSRIVDVASGG---SACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIA 295 (340)
Q Consensus 219 ~p~~i~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~ 295 (340)
....+. .....|..++... ...+.-.+||.|..|-. .....+.. .+. ...|..|+.
T Consensus 261 ~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~------------~~~~~~~~--~~H-----~~~V~~vaf 319 (357)
T 4g56_B 261 SAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDA------------DFSEVFRD--LSH-----RDFVTGVAW 319 (357)
T ss_dssp GCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECT------------TSCEEEEE--CCC-----SSCEEEEEE
T ss_pred EeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC------------CCCcEeEE--CCC-----CCCEEEEEE
Confidence 111111 1134677777643 33444578999999931 01111111 111 246788876
Q ss_pred cC---CceEEEecCCcEEEEeCCCCC
Q psy5892 296 GP---CTFGAITNFGHLYMWGKNQYG 318 (340)
Q Consensus 296 G~---~~~~~lt~~g~vy~wG~n~~G 318 (340)
-. ...+.-..||.|..|=....+
T Consensus 320 sP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 320 SPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CSSSTTEEEEEETTSCEEEEECC---
T ss_pred eCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 42 233335688999999765443
No 92
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=23.60 E-value=3.4e+02 Score=23.04 Aligned_cols=229 Identities=10% Similarity=0.034 Sum_probs=112.5
Q ss_pred EEEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc-----CCeeEEEEcCCc
Q psy5892 71 KHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG-----QDHTLFLTESGK 145 (340)
Q Consensus 71 ~~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g-----~~~~~~lt~~g~ 145 (340)
..++.+.++.+++|+.|++|..-....-..+... .. .+....++--++++|+.+..- ....+++|++|.
T Consensus 44 ~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a---~G---~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 44 MLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKD---LG---QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp EEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTS---CC---EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred EEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCC---CC---cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 3356677789999999999999765432222110 00 011111221235677766443 235788899998
Q ss_pred EEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEE--EecCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEe
Q psy5892 146 VYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKL--SSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVL 223 (340)
Q Consensus 146 vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i--~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i 223 (340)
+.-.-..++-.... ..-..-..+. ++..++.+ ..+.+..+++|++|+++-+-.+..-.+|..... .+.
T Consensus 118 iKrt~l~e~~~~~r---~~G~~ai~l~---e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~G----V~~ 187 (323)
T 1wp5_A 118 VKKTELKHYKAQRY---SKPLTGINLK---NDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAG----VKG 187 (323)
T ss_dssp EEEEEGGGGCCSCC---SSCEECSCCC---TTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCC----EEC
T ss_pred EEEeEHHHhhhccc---cCceEEEEeC---CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcC----EEE
Confidence 87665433321110 0001111111 12234333 336778999999999999987665444542221 122
Q ss_pred ecccCcccEEEEEec--Cc-eEEEEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEE--EEccCC
Q psy5892 224 SQCKGVSRIVDVASG--GS-ACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVES--LIAGPC 298 (340)
Q Consensus 224 ~~~~~~~~i~~i~~g--~~-~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~--i~~G~~ 298 (340)
-.+...+.|..+..= .. ..++++++|..--.--.++-.... -..-...... +. ..+..++. +..+..
T Consensus 188 i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~R---g~kGv~~~~~-~~----~~~~~l~~~~~v~~~~ 259 (323)
T 1wp5_A 188 MNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATR---AKRGVVILRE-LK----ANPHRISGFVVAQDSD 259 (323)
T ss_dssp CCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCT---TSCCEECSCC-CS----SSCCCEEEEEEECTTC
T ss_pred EEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCC---CCCCEECeee-cC----CCCceEEEEEEeCCCC
Confidence 122335566665431 22 456667666533222111100000 0000111100 00 01224443 234567
Q ss_pred ceEEEecCCcEEEEeCCCCCcccCC
Q psy5892 299 TFGAITNFGHLYMWGKNQYGQLGLG 323 (340)
Q Consensus 299 ~~~~lt~~g~vy~wG~n~~GqLG~g 323 (340)
..+++|++|++.-.-.++--..|..
T Consensus 260 ~i~~it~~g~~ir~~~~~i~~~~R~ 284 (323)
T 1wp5_A 260 TIYLQTEKSFIETIKVGDIRFSDRY 284 (323)
T ss_dssp EEEEEETTSCEEEEEGGGSCBCCSS
T ss_pred eEEEEeCCCeEEEEEhhhcCccCcc
Confidence 8889999999887766655555443
No 93
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=23.48 E-value=3.4e+02 Score=23.04 Aligned_cols=158 Identities=8% Similarity=-0.001 Sum_probs=78.7
Q ss_pred EeecCCeEEEEE-ecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCC---CeEEE
Q psy5892 7 IACGYGFTVVAT-KSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGR---AHTIV 82 (340)
Q Consensus 7 v~~G~~~~~~l~-~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~---~~~~~ 82 (340)
+++...+.+++. -+.||. |+.|-....+++. ..+.....+ ...|..++... ...+.
T Consensus 40 ~~~~~~~~~~~~~~~~~g~--i~v~~~~~~~~~~-----------------~~~~~~~~h-~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGA--FLVLPLGKTGRVD-----------------KNVPLVCGH-TAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp EEECSSEEEEEBCCSSSCC--EEEEETTCCEECC-----------------TTCCCBCCC-SSCEEEEEECTTCTTEEEE
T ss_pred EEECCCeEEEEEEEcCCCE--EEEEECccCCCCC-----------------CCCceEecC-CCCEEEEEeCCCCCCEEEE
Confidence 555666666553 246788 7777544333221 111111111 45777777643 34444
Q ss_pred EeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCC---eeEEEEcCCcEEEEEeCCCCCCCC
Q psy5892 83 ITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQD---HTLFLTESGKVYSCGWGADGQTGL 159 (340)
Q Consensus 83 lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~---~~~~lt~~g~vy~wG~n~~gqlg~ 159 (340)
-..||.|..|-....+.... . ......+..- ...|..++-... ..+.-..||.|+.|-.....
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~-------~--~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~---- 165 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLP-------L--REPVITLEGH-TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA---- 165 (402)
T ss_dssp EETTSEEEEEECCTTCCSSC-------B--CSCSEEEECC-SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE----
T ss_pred EeCCCeEEEEEccCCCCccc-------c--CCceEEecCC-CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC----
Confidence 56789999997544321100 0 0001111111 355666664433 44555778999999743211
Q ss_pred CCCCCeeeceeecccccCccEEEEEec--CcEEEEEeCCCCEEEEeCC
Q psy5892 160 GHLNNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNS 205 (340)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n 205 (340)
. ...+........|..++.. ....+....+|.|..|-..
T Consensus 166 ------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 166 ------A-VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp ------E-EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred ------c-cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 0 1111000122356666653 3455556678899999654
No 94
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=23.38 E-value=2.9e+02 Score=22.24 Aligned_cols=80 Identities=6% Similarity=-0.073 Sum_probs=44.6
Q ss_pred CCCeEEEEeCC----CeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc----CCeeE
Q psy5892 67 STQIKHLATGR----AHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG----QDHTL 138 (340)
Q Consensus 67 ~~~i~~i~~g~----~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g----~~~~~ 138 (340)
...|..++... ...+.-..||.|..|-.......... ........+.. ....|..++.. ....+
T Consensus 57 ~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~-------~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~ 128 (351)
T 3f3f_A 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG-------RRWNKLCTLND-SKGSLYSVKFAPAHLGLKLA 128 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS-------CSEEEEEEECC-CSSCEEEEEECCGGGCSEEE
T ss_pred CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc-------cCcceeeeecc-cCCceeEEEEcCCCCCcEEE
Confidence 55788887753 44555678899999976532111000 00011111211 13567777655 34566
Q ss_pred EEEcCCcEEEEEeCCC
Q psy5892 139 FLTESGKVYSCGWGAD 154 (340)
Q Consensus 139 ~lt~~g~vy~wG~n~~ 154 (340)
.-..+|.|+.|-....
T Consensus 129 ~~~~dg~v~iwd~~~~ 144 (351)
T 3f3f_A 129 CLGNDGILRLYDALEP 144 (351)
T ss_dssp EEETTCEEEEEECSST
T ss_pred EecCCCcEEEecCCCh
Confidence 6688999999975443
No 95
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=22.32 E-value=3.1e+02 Score=22.10 Aligned_cols=123 Identities=7% Similarity=-0.080 Sum_probs=66.0
Q ss_pred CCCeEEEEeCCC--eEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEcc----CCeeEEE
Q psy5892 67 STQIKHLATGRA--HTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCG----QDHTLFL 140 (340)
Q Consensus 67 ~~~i~~i~~g~~--~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g----~~~~~~l 140 (340)
...|..++...+ ..+.-..||.|..|-...... .......+... ...|..++-. ....+.-
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------~~~~~~~~~~~-~~~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS------------NWELSDSWRAH-DSSIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC------------CEEEEEEEECC-SSCEEEEEECCGGGCSEEEEE
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC------------cceecceeccC-CCcEEEEEEcCCCCCCEEEEE
Confidence 446777776544 344445788888886542110 00111112211 3567777653 3455666
Q ss_pred EcCCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEecC----cEEEEEeCCCCEEEEeCCC
Q psy5892 141 TESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAV----DCVLAVSDKGDVFGWGNSE 206 (340)
Q Consensus 141 t~~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~----~~~~~l~~~g~v~~wG~n~ 206 (340)
..||.|..|-......... .....+.... ......|..++... .+.++...+|.|..|-...
T Consensus 78 ~~dg~v~vwd~~~~~~~~~---~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 78 SYDKTVKLWEEDPDQEECS---GRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp ETTSCEEEEEECTTSCTTS---SCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred cCCCeEEEEecCCCccccc---ccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 7899999998654322110 0111111111 12234677777764 4666778899999997554
No 96
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=22.28 E-value=3.2e+02 Score=22.26 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=64.4
Q ss_pred CCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeC--CCeEEEEeCCCc
Q psy5892 11 YGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATG--RAHTIVITDNEG 88 (340)
Q Consensus 11 ~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g--~~~~~~lt~~g~ 88 (340)
..+.+++ |+.|+ +|..-... |-.+. .. .. .....+.+.. +++|+.+... ..+.+++|++|.
T Consensus 44 ~~~ll~~--T~~Gr--~~~~~~~e---lp~~r--~~---G~--~i~~~i~L~~---~e~Iv~~~~~~~~~~lll~T~~G~ 106 (256)
T 1zvt_A 44 NQPVVFV--DSTGR--SYAIDPIT---LPSAR--GQ---GE--PLTGKLTLPP---GATVDHMLMESDDQKLLMASDAGY 106 (256)
T ss_dssp TSCEEEE--ETTSE--EEEECGGG---SCCSS--SC---CE--EGGGTCCCCT---TCCEEEEECCCTTCEEEEEBTTSE
T ss_pred CCEEEEE--eCCCe--EEEEEHHH---CCCcC--CC---Ce--EeeeeecCCC---CCEEEEEEEeCCCCEEEEEeCCCe
Confidence 3344444 79998 88887543 21110 00 00 0111333433 7788888773 345778899998
Q ss_pred EEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEE--E-ccCCeeEEEEcCCcEEEEEeCCCCCCCC
Q psy5892 89 AFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDA--V-CGQDHTLFLTESGKVYSCGWGADGQTGL 159 (340)
Q Consensus 89 l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i--~-~g~~~~~~lt~~g~vy~wG~n~~gqlg~ 159 (340)
+.-.-...+-....+ -.....+. ++..++.+ . .+.++.+++|++|++..+--++--.+|.
T Consensus 107 ~Kr~~~~e~~~~~r~---------G~~~i~L~--~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 107 GFVCTFNDLVARNRA---------GKALITLP--ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp EEEEEGGGGCCCSTT---------CEECBCCC--TTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred EEEeEHHHhcccCcC---------ceEEEEEC--CCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 877765443110000 00111111 12233322 2 3677899999999999888766555554
No 97
>1rg8_A Heparin-binding growth factor 1; beta-trefoil, hormone/growth factor complex; 1.10A {Homo sapiens} SCOP: b.42.1.1 PDB: 1jqz_A 3fjb_A 1jt3_A 1jt4_A 1jtc_A 3baq_A 3bah_A 3fja_A 3fj9_A 3fjk_A 3hom_A 3fjc_A 3ba5_A 3fjh_A 1jt5_A 1k5v_A 3fjj_A 1jy0_A 3bao_A 3fjf_A ...
Probab=21.68 E-value=2.5e+02 Score=20.83 Aligned_cols=66 Identities=12% Similarity=-0.013 Sum_probs=41.5
Q ss_pred CCCeEEEEeCC-CeEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEE-ccCCeeEEEEcCC
Q psy5892 67 STQIKHLATGR-AHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAV-CGQDHTLFLTESG 144 (340)
Q Consensus 67 ~~~i~~i~~g~-~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~-~g~~~~~~lt~~g 144 (340)
..++.++.|-. .+.+.|..||+|-+...... .........+. ..++.|- .-...-+|++++|
T Consensus 14 ~~R~~qLY~r~~g~~LqI~~dG~V~Gt~~~~~------------~~s~l~i~sv~----~G~V~I~gv~s~~YLcMn~~G 77 (146)
T 1rg8_A 14 YKKPKLLYCSNGGHFLRILPDGTVDGTRDRSD------------QHIQLQLSAES----VGEVYIKSTETGQYLAMDTDG 77 (146)
T ss_dssp SSSCEEEEETTTTEEEEECTTSCEEEECCTTC------------TTCCEEEEEEE----TTEEEEEETTTCCEEEECTTS
T ss_pred CeeEEEEEEcCCCEEEEECCCCcEeeeccCCC------------CceEEEEEeec----CCeEEEEEcccCcEEEECCCC
Confidence 67899999987 78899999999987644211 00111122221 2244443 3344578899999
Q ss_pred cEEE
Q psy5892 145 KVYS 148 (340)
Q Consensus 145 ~vy~ 148 (340)
+||.
T Consensus 78 ~Lyg 81 (146)
T 1rg8_A 78 LLYG 81 (146)
T ss_dssp CEEE
T ss_pred CEee
Confidence 9996
No 98
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=20.71 E-value=3.8e+02 Score=22.52 Aligned_cols=246 Identities=7% Similarity=-0.058 Sum_probs=0.0
Q ss_pred CCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEE-eCCCeEEEEeCCCcE
Q psy5892 11 YGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLA-TGRAHTIVITDNEGA 89 (340)
Q Consensus 11 ~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~-~g~~~~~~lt~~g~l 89 (340)
..+...+.-+.||+ +...+++...++-.+.......+............... ...|..++ ......+.-..||.|
T Consensus 30 ~~~v~~~~fs~dG~--~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~d~~l~~~s~dg~v 105 (344)
T 4gqb_B 30 ERQLEAARYRSDGA--LLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQT--EAGVADLTWVGERGILVASDSGAV 105 (344)
T ss_dssp CSEEEEEEECTTSC--EEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEE--SSCEEEEEEETTTEEEEEETTSEE
T ss_pred cCCEEEEEECCCCC--EEEEEeCCceEEeeceeeeeccccccCCcceeeeeecc--CCCEEEEEEeCCCeEEEEECCCEE
Q ss_pred EEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCCCCCeeece
Q psy5892 90 FTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPC 169 (340)
Q Consensus 90 ~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~ 169 (340)
..|-......+... .......-....-+.++....+.+.-..|+.|..|-... ..+.
T Consensus 106 ~lWd~~~~~~~~~~-----------~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~------------~~~~ 162 (344)
T 4gqb_B 106 ELWELDENETLIVS-----------KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ------------QVVL 162 (344)
T ss_dssp EEEEECTTSSCEEE-----------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT------------TEEE
T ss_pred EEEeccCCCceeEe-----------eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC------------CcEE
Q ss_pred eecccccCccEEEEEe---cCcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCceEeecccCcccEEEEEe---cCceEE
Q psy5892 170 LVRGEIEGERIVKLSS---AVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVAS---GGSACT 243 (340)
Q Consensus 170 ~~~~~~~~~~i~~i~~---g~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p~~i~~~~~~~~i~~i~~---g~~~~~ 243 (340)
... .--...|..++. +....+.-..||.|..| +.........+........+..++. +....+
T Consensus 163 ~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iw----------d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 163 SSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLW----------DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp EEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEE----------ETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred EEE-cCcCCceEEEEecCCCCCceeeeccccccccc----------cccccceeeeeecceeeccceeeeecCCCCcceE
Q ss_pred EEcCCCcEEEEcCCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEc---cCCceEEEecCCcEEEE
Q psy5892 244 MLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIA---GPCTFGAITNFGHLYMW 312 (340)
Q Consensus 244 ~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~---G~~~~~~lt~~g~vy~w 312 (340)
.-..||.|..| +.........+... ...|..|+. |....+.-.++|.|..|
T Consensus 232 sg~~dg~v~~w---------d~~~~~~~~~~~~h---------~~~v~~v~fsp~g~~~lasgs~D~~i~vw 285 (344)
T 4gqb_B 232 FGDENGTVSLV---------DTKSTSCVLSSAVH---------SQCVTGLVFSPHSVPFLASLSEDCSLAVL 285 (344)
T ss_dssp EEETTSEEEEE---------ESCC--CCEEEECC---------SSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred EeccCCcEEEE---------ECCCCcEEEEEcCC---------CCCEEEEEEccCCCeEEEEEeCCCeEEEE
No 99
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=20.43 E-value=3.8e+02 Score=24.16 Aligned_cols=73 Identities=15% Similarity=0.212 Sum_probs=41.7
Q ss_pred ccEEEEE-----ecCceEEEEcCCCcEEEEcCCCCCCCCCCccccCceeeccc--ccCCcccCCCCCeEEEEccCCc--e
Q psy5892 230 SRIVDVA-----SGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPST--LFGQHQFNPKSKVESLIAGPCT--F 300 (340)
Q Consensus 230 ~~i~~i~-----~g~~~~~~lt~~g~v~~~G~g~~g~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~i~~i~~G~~~--~ 300 (340)
.+|+++- ....+.++||+|+.|..|--.. ....|..++.. .++.. .....|.+++.|..- .
T Consensus 125 s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~--------s~~~P~~L~k~~~~fg~d--~~~~ev~S~~Fg~~~lTL 194 (452)
T 3pbp_A 125 SSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN--------SQEKPIVLNKPNNSFGLD--ARVNDITDLEFSKDGLTL 194 (452)
T ss_dssp CCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC--------TTSCCEEESCCCSEEESC--SSCCCEEEEEECTTSSCE
T ss_pred CceeEEEeccccCCCCeEEEEecCCEEEEEEccc--------CCCCCcchhccccccCCC--cccceEEEEEEcCCCcEE
Confidence 3466654 3356889999999999995211 22333323211 11111 123678888777643 2
Q ss_pred EEEe--cCCcEEEE
Q psy5892 301 GAIT--NFGHLYMW 312 (340)
Q Consensus 301 ~~lt--~~g~vy~w 312 (340)
.+++ +.|.||+.
T Consensus 195 Yvl~~t~~GDIYAl 208 (452)
T 3pbp_A 195 YCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEecCCCCCEEEE
Confidence 3445 77999986
No 100
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=20.20 E-value=3.5e+02 Score=21.86 Aligned_cols=148 Identities=8% Similarity=-0.014 Sum_probs=72.8
Q ss_pred CCCeEEEEeCCC--eEEEEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEc--cCCeeEEEEc
Q psy5892 67 STQIKHLATGRA--HTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVC--GQDHTLFLTE 142 (340)
Q Consensus 67 ~~~i~~i~~g~~--~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--g~~~~~~lt~ 142 (340)
...|..++...+ ..+.-..||.|..|-.... + ....+... ...|..++- .....+.-..
T Consensus 65 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~---------------~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~ 127 (312)
T 4ery_A 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-K---------------CLKTLKGH-SNYVFCCNFNPQSNLIVSGSF 127 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-C---------------EEEEEECC-SSCEEEEEECSSSSEEEEEET
T ss_pred CCceEEEEEcCCCCEEEEECCCCEEEEEECCCC-c---------------EEEEEcCC-CCCEEEEEEcCCCCEEEEEeC
Confidence 445666665544 3344457888888854321 1 11111111 233444433 3334555567
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCeeeceeecccccCccEEEEEec--CcEEEEEeCCCCEEEEeCCCCCCCCCCCccccCc
Q psy5892 143 SGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSA--VDCVLAVSDKGDVFGWGNSEYGQISESEMQISTP 220 (340)
Q Consensus 143 ~g~vy~wG~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqlg~~~~~~~~p 220 (340)
+|.|+.|-...... ...+. .....|..++.. ....+.-..+|.|..|-...... .
T Consensus 128 d~~i~iwd~~~~~~-----------~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~----------~ 184 (312)
T 4ery_A 128 DESVRIWDVKTGKC-----------LKTLP--AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC----------L 184 (312)
T ss_dssp TSCEEEEETTTCCE-----------EEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----------E
T ss_pred CCcEEEEECCCCEE-----------EEEec--CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----------e
Confidence 88898886332110 01111 112345555543 34555666788899986542110 0
Q ss_pred eEeecccCcccEEEEEec--CceEEEEcCCCcEEEEc
Q psy5892 221 RVLSQCKGVSRIVDVASG--GSACTMLNDEGLVYSWG 255 (340)
Q Consensus 221 ~~i~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G 255 (340)
..+. ......+..++.. ..+.++-..+|.|..|-
T Consensus 185 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 220 (312)
T 4ery_A 185 KTLI-DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220 (312)
T ss_dssp EEEC-CSSCCCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred eEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 1111 1112345555443 34556667789999984
Done!